Psyllid ID: psy8937

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------
Protein Sequence
TPSYRSVPGGSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVISFHENAT
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
tpsyrsvpggskplhsldaryckicgkhysnssnlkQHIRLIhlpgilfcplcqkcfknklylrrhvgtythtpsyrsvpgaskplhsldaryckicgkhysnssnlkQHIRLIhlpgilfcplcqkcfknklylRRHVISFHENAT
Flexible Loop (DISEMBL)
tpsyrsvpggskplhslDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTythtpsyrsvpgaSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVISFHENAT
Low Complexity Region (SEG)
TPSYRSVPGGSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVISFHENAT
Disordered region (IsUnstruct)
****************LDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVISF*****
Disordered Region (DISOPRED)
*PSYRSVPGGSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRH**SFH****
Disordered Region (DISEMBL)
***********KPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVISFHENAT
Disordered Region (DISPRO)
******************ARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASK*L*SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVISF*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
TPSYRSVPGGSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVISFHENAT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	147	2.2.26 [Sep-21-2011]
Q92010	448	Zinc finger protein 161 h	yes	N/A	0.687	0.225	0.273	2e-09
Q8IZ20	524	Zinc finger protein 683 O	yes	N/A	0.795	0.223	0.347	3e-09
Q9N658	541	Zinc finger protein sens	yes	N/A	0.734	0.199	0.373	3e-09
O43829	449	Zinc finger protein 161 h	yes	N/A	0.734	0.240	0.266	4e-09
Q07120	423	Zinc finger protein Gfi-1	no	N/A	0.782	0.271	0.365	4e-09
P70338	423	Zinc finger protein Gfi-1	no	N/A	0.782	0.271	0.365	4e-09
Q5DWN0	422	Zinc finger protein Gfi-1	yes	N/A	0.782	0.272	0.365	5e-09
Q08376	449	Zinc finger protein 161 O	no	N/A	0.734	0.240	0.266	5e-09
Q3URR7	782	Zinc finger and SCAN doma	no	N/A	0.721	0.135	0.327	5e-09
Q99684	422	Zinc finger protein Gfi-1	no	N/A	0.782	0.272	0.365	7e-09

>sp|Q92010|ZF161_CHICK Zinc finger protein 161 homolog OS=Gallus gallus GN=ZFP161 PE=2 SV=1

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 16/117 (13%)

Query: 22  CKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPG 81
           C+ CGK +S+ + L++H +L        C +C K F  + +L+ H+  +T    Y     
Sbjct: 277 CQACGKTFSDEARLRKHEKLHTADRPFVCEMCTKGFTTQAHLKEHLKIHTGYKPYS---- 332

Query: 82  ASKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRH 138
                       C++CGK +  + +LK+H R+        C +C K FK+K +L+ H
Sbjct: 333 ------------CEVCGKSFIRAPDLKKHERVHSNERPFACHMCDKAFKHKSHLKDH 377

Transcriptional repressor of MYC and thymidine kinase promoters.
Gallus gallus (taxid: 9031)

>sp|Q8IZ20|ZN683_HUMAN Zinc finger protein 683 OS=Homo sapiens GN=ZNF683 PE=2 SV=3

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 59/121 (48%), Gaps = 4/121 (3%)

Query: 22  CKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRR----HVGTYTHTPSYR 77
           C ICGK +   SNLK H+R+        C LCQK F    +L++    H G   H  S  
Sbjct: 324 CNICGKSFGQLSNLKVHLRVHSGERPFQCALCQKSFTQLAHLQKHHLVHTGERPHKCSIP 383

Query: 78  SVPGASKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRR 137
            VPG +        R  ++C K +S+SSNLK H+RL        C +C+  F   ++L+ 
Sbjct: 384 WVPGRNHWKSFQAWREREVCHKRFSSSSNLKTHLRLHSGARPFQCSVCRSRFTQHIHLKL 443

Query: 138 H 138
           H
Sbjct: 444 H 444

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q9N658|GFI1_DROME Zinc finger protein sens OS=Drosophila melanogaster GN=sens PE=1 SV=1

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/126 (37%), Positives = 59/126 (46%), Gaps = 18/126 (14%)

Query: 22  CKICGKHYSNSSNLKQHIRLIHLPGILF-CPLCQKCFKNKLYLRRHVGTYTHTPSYRSVP 80
           CK CGK +  SS L  H+ LIH     + C  C K F  K  +++H  TY HT       
Sbjct: 415 CKQCGKSFKRSSTLSTHL-LIHSDTRPYPCQYCGKRFHQKSDMKKH--TYIHT------- 464

Query: 81  GASKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVI 140
              KP        C +C K +S SSNL  H+R         C LC + F+ K+ LRRH  
Sbjct: 465 -GEKP------HKCTVCLKAFSQSSNLITHMRKHTGYKPFGCHLCDQSFQRKVDLRRHRE 517

Query: 141 SFHENA 146
           S HE A
Sbjct: 518 SRHEEA 523

Transcription factor both necessary and sufficient for proper development of most cell types of the embryonic and adult peripheral nervous system (PNS). Essential component of the proneural Notch signaling pathway required for proper sensory organ precursor (SOP) differentiation. Correct expression requires expression of scalloped (sd). Repression of rough (ro) in R8 photoreceptor is an essential mechanism of R8 cell fate determination.

Drosophila melanogaster (taxid: 7227)

>sp|O43829|ZF161_HUMAN Zinc finger protein 161 homolog OS=Homo sapiens GN=ZFP161 PE=2 SV=2

 Score = 60.5 bits (145), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 16/124 (12%)

Query: 15  HSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTYTHTP 74
           H  +   C+ CGK +S+   L++H +L        C +C K F  + +L+ H+  +T   
Sbjct: 272 HHREQIACQACGKTFSDEGRLRKHEKLHTADRPFVCEMCTKGFTTQAHLKEHLKIHTGYK 331

Query: 75  SYRSVPGASKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLY 134
            Y                 C++CGK +  + +LK+H R+        C +C K FK+K +
Sbjct: 332 PYS----------------CEVCGKSFIRAPDLKKHERVHSNERPFACHMCDKAFKHKSH 375

Query: 135 LRRH 138
           L+ H
Sbjct: 376 LKDH 379

Transcriptional repressor of MYC and thymidine kinase promoters (By similarity). Transcriptional activator of the dopamine transporter (DAT), binding it's promoter at the consensus sequence 5'-CCTGCACAGTTCACGGA-3'.

Homo sapiens (taxid: 9606)

>sp|Q07120|GFI1_RAT Zinc finger protein Gfi-1 OS=Rattus norvegicus GN=Gfi1 PE=1 SV=1

 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 65/134 (48%), Gaps = 19/134 (14%)

Query: 12  KPLHSLDARY-CKICGKHYSNSSNLKQHIRLIHLPGILF-CPLCQKCFKNKLYLRRHVGT 69
           K +HS +  + CKICGK +  SS L  H+ LIH     + C  C K F  K  +++H  T
Sbjct: 304 KAVHSQERSFDCKICGKSFKRSSTLSTHL-LIHSDTRPYPCQYCGKRFHQKSDMKKH--T 360

Query: 70  YTHTPSYRSVPGASKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCF 129
           + HT          KP        C++CGK +S SSNL  H R         C LC K F
Sbjct: 361 FIHT--------GEKP------HKCQVCGKAFSQSSNLITHSRKHTGFKPFGCDLCGKGF 406

Query: 130 KNKLYLRRHVISFH 143
           + K+ LRRH  + H
Sbjct: 407 QRKVDLRRHRETQH 420

Transcription repressor essential for hematopoiesis. Functions in a cell-context and development-specific manner. Binds to 5'-TAAATCAC[AT]GCA-3' in the promoter region of a large number of genes. Component of several complexes, including the EHMT2-GFI1-HDAC1, AJUBA-GFI1-HDAC1 and RCOR-GFI-KDM1A-HDAC complexes, that suppress, via histone deacetylase (HDAC) recruitment, a number of genes implicated in multilineage blood cell development. Regulates neutrophil differentiation, promotes proliferation of lymphoid cells, and is required for granulocyte development. Mediates, together with U2AF1L4, the alternative splicing of CD45 and controls T-cell receptor signaling. Regulates the endotoxin-mediated Toll-like receptor (TLR) inflammatory response by antagonizing RELA. Cooperates with CBFA2T2 to regulate ITGB1-dependent neurite growth. Controls cell-cycle progression by repressing CDKNIA/p21 transcription in response to TGFB1 via recruitment of GFI1 by ZBTB17 to the CDKNIA/p21 promoter region. Implicated in the maintenance of inner ear hair cells.

Rattus norvegicus (taxid: 10116)

>sp|P70338|GFI1_MOUSE Zinc finger protein Gfi-1 OS=Mus musculus GN=Gfi1 PE=1 SV=2

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 65/134 (48%), Gaps = 19/134 (14%)

Query: 12  KPLHSLDARY-CKICGKHYSNSSNLKQHIRLIHLPGILF-CPLCQKCFKNKLYLRRHVGT 69
           K +HS +  + CKICGK +  SS L  H+ LIH     + C  C K F  K  +++H  T
Sbjct: 304 KAVHSQERSFDCKICGKSFKRSSTLSTHL-LIHSDTRPYPCQYCGKRFHQKSDMKKH--T 360

Query: 70  YTHTPSYRSVPGASKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCF 129
           + HT          KP        C++CGK +S SSNL  H R         C LC K F
Sbjct: 361 FIHT--------GEKP------HKCQVCGKAFSQSSNLITHSRKHTGFKPFGCDLCGKGF 406

Query: 130 KNKLYLRRHVISFH 143
           + K+ LRRH  + H
Sbjct: 407 QRKVDLRRHRETQH 420

Transcription repressor essential for hematopoiesis. Functions in a cell-context and development-specific manner. Binds to 5'-TAAATCAC[AT]GCA-3' in the promoter region of a large number of genes. Component of several complexes, including the EHMT2-GFI1-HDAC1, AJUBA-GFI1-HDAC1 and RCOR-GFI-KDM1A-HDAC complexes, that suppress, via histone deacetylase (HDAC) recruitment, a number of genes implicated in multilineage blood cell development. Regulates neutrophil differentiation, promotes proliferation of lymphoid cells, and is required for granulocyte development. Mediates, together with U2AF1L4, the alternative splicing of CD45 and controls T-cell receptor signaling. Regulates the endotoxin-mediated Toll-like receptor (TLR) inflammatory response by antagonizing RELA. Cooperates with CBFA2T2 to regulate ITGB1-dependent neurite growth. Controls cell-cycle progression by repressing CDKNIA/p21 transcription in response to TGFB1 via recruitment of GFI1 by ZBTB17 to the CDKNIA/p21 promoter. Required for the maintenance of inner ear hair cells.

Mus musculus (taxid: 10090)

>sp|Q5DWN0|GFI1_CANFA Zinc finger protein Gfi-1 OS=Canis familiaris GN=GFI1 PE=2 SV=1

 Score = 60.1 bits (144), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 65/134 (48%), Gaps = 19/134 (14%)

Query: 12  KPLHSLDARY-CKICGKHYSNSSNLKQHIRLIHLPGILF-CPLCQKCFKNKLYLRRHVGT 69
           K +HS +  + CKICGK +  SS L  H+ LIH     + C  C K F  K  +++H  T
Sbjct: 303 KAVHSQERSFDCKICGKSFKRSSTLSTHL-LIHSDTRPYPCQYCGKRFHQKSDMKKH--T 359

Query: 70  YTHTPSYRSVPGASKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCF 129
           + HT          KP        C++CGK +S SSNL  H R         C LC K F
Sbjct: 360 FIHT--------GEKP------HKCQVCGKAFSQSSNLITHSRKHTGFKPFGCDLCGKGF 405

Query: 130 KNKLYLRRHVISFH 143
           + K+ LRRH  + H
Sbjct: 406 QRKVDLRRHRETQH 419

Transcription repressor essential for hematopoiesis. Functions in a cell-context and development-specific manner. Binds to 5'-TAAATCAC[AT]GCA-3' in the promoter region of a large number of genes. Component of several complexes, including the EHMT2-GFI1-HDAC1, AJUBA-GFI1-HDAC1 and RCOR-GFI-KDM1A-HDAC complexes, that suppress, via histone deacetylase (HDAC) recruitment, a number of genes implicated in multilineage blood cell development. Regulates neutrophil differentiation, promotes proliferation of lymphoid cells, and is required for granulocyte development. Mediates, together with U2AF1L4, the alternative splicing of CD45 and controls T-cell receptor signaling. Regulates the endotoxin-mediated Toll-like receptor (TLR) inflammatory response by antagonizing RELA. Cooperates with CBFA2T2 to regulate ITGB1-dependent neurite growth. Controls cell-cycle progression by repressing CDKNIA/p21 transcription in response to TGFB1 via recruitment of GFI1 by ZBTB17 to the CDKNIA/p21 promoter. Required for the maintenance of inner ear hair cells.

Canis familiaris (taxid: 9615)

>sp|Q08376|ZF161_MOUSE Zinc finger protein 161 OS=Mus musculus GN=Zfp161 PE=2 SV=1

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 16/124 (12%)

Query: 15  HSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTYTHTP 74
           H  +   C+ CGK +S+   L++H +L        C +C K F  + +L+ H+  +T   
Sbjct: 272 HHREQIACQACGKTFSDEGRLRKHEKLHTADRPFVCEMCTKGFTTQAHLKEHLKIHTGYK 331

Query: 75  SYRSVPGASKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLY 134
            Y                 C++CGK +  + +LK+H R+        C +C K FK+K +
Sbjct: 332 PYS----------------CEVCGKSFIRAPDLKKHERVHSNERPFACHMCDKAFKHKSH 375

Query: 135 LRRH 138
           L+ H
Sbjct: 376 LKDH 379

Transcriptional repressor of MYC and thymidine kinase promoters.

Mus musculus (taxid: 10090)

>sp|Q3URR7|ZSC10_MOUSE Zinc finger and SCAN domain-containing protein 10 OS=Mus musculus GN=Zscan10 PE=1 SV=2

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 59/119 (49%), Gaps = 13/119 (10%)

Query: 22  CKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPG 81
           C ICG  + NSSNL +H R         CP C + F+   +L+RH+ T+T +   + VP 
Sbjct: 667 CDICGHRFRNSSNLARHRRSHTGERPYSCPTCGRSFRRNAHLQRHLITHTGSKQEKEVP- 725

Query: 82  ASKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILF-CPLCQKCFKNKLYLRRHV 139
                     + C  CGK ++ S NL +H+ L+H     + C LC + F    +L RH+
Sbjct: 726 ----------QECPECGKSFNRSCNLLRHL-LVHTGARPYSCALCGRSFSRNSHLLRHL 773

Embryonic stem (ES) cell-specific transcription factor required to maintain ES cell pluripotency. Can both activate and /or repress expression of target genes, depending on the context. Specifically binds the 5'-[GA]CGCNNGCG[CT]-3' DNA consensus sequence. Regulates expression of POU5F1/OCT4, ZSCAN4 and ALYREF/THOC4.

Mus musculus (taxid: 10090)

>sp|Q99684|GFI1_HUMAN Zinc finger protein Gfi-1 OS=Homo sapiens GN=GFI1 PE=1 SV=2

 Score = 59.7 bits (143), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 65/134 (48%), Gaps = 19/134 (14%)

Query: 12  KPLHSLDARY-CKICGKHYSNSSNLKQHIRLIHLPGILF-CPLCQKCFKNKLYLRRHVGT 69
           K +HS +  + CKICGK +  SS L  H+ LIH     + C  C K F  K  +++H  T
Sbjct: 303 KAVHSQERSFDCKICGKSFKRSSTLSTHL-LIHSDTRPYPCQYCGKRFHQKSDMKKH--T 359

Query: 70  YTHTPSYRSVPGASKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCF 129
           + HT          KP        C++CGK +S SSNL  H R         C LC K F
Sbjct: 360 FIHT--------GEKP------HKCQVCGKAFSQSSNLITHSRKHTGFKPFGCDLCGKGF 405

Query: 130 KNKLYLRRHVISFH 143
           + K+ LRRH  + H
Sbjct: 406 QRKVDLRRHRETQH 419

Transcription repressor essential for hematopoiesis. Functions in a cell-context and development-specific manner. Binds to 5'-TAAATCAC[AT]GCA-3' in the promoter region of a large number of genes. Component of several complexes, including the EHMT2-GFI1-HDAC1, AJUBA-GFI1-HDAC1 and RCOR-GFI-KDM1A-HDAC complexes, that suppress, via histone deacetylase (HDAC) recruitment, a number of genes implicated in multilineage blood cell development. Regulates neutrophil differentiation, promotes proliferation of lymphoid cells, and is required for granulocyte development. Mediates, together with U2AF1L4, the alternative splicing of CD45 and controls T-cell receptor signaling. Regulates the endotoxin-mediated Toll-like receptor (TLR) inflammatory response by antagonizing RELA. Cooperates with CBFA2T2 to regulate ITGB1-dependent neurite growth. Controls cell-cycle progression by repressing CDKNIA/p21 transcription in response to TGFB1 via recruitment of GFI1 by ZBTB17 to the CDKNIA/p21 promoter. Required for the maintenance of inner ear hair cells.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	147
193613188	312	PREDICTED: protein abrupt-like [Acyrthos	0.578	0.272	0.533	5e-16
91091380	463	PREDICTED: similar to broadZ1 [Tribolium	0.421	0.133	0.596	9e-15
332030135	473	Broad-complex core protein isoform 6 [Ac	0.401	0.124	0.644	1e-14
307205693	467	Broad-complex core protein isoform 6 [Ha	0.401	0.126	0.644	1e-14
322786994	473	hypothetical protein SINV_06487 [Solenop	0.401	0.124	0.644	1e-14
340727383	455	PREDICTED: hypothetical protein LOC10065	0.401	0.129	0.644	1e-14
307186118	476	Broad-complex core protein isoform 6 [Ca	0.401	0.123	0.627	5e-14
401403075	1590	zinc finger protein 467, related [Neospo	0.721	0.066	0.338	1e-10
157132286	476	hypothetical protein AaeL_AAEL012388 [Ae	0.346	0.107	0.477	3e-10
347966312	498	AGAP001646-PA [Anopheles gambiae str. PE	0.265	0.078	0.545	3e-10

>gi|193613188|ref|XP_001944192.1| PREDICTED: protein abrupt-like [Acyrthosiphon pisum]

 Score = 89.0 bits (219), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 48/90 (53%), Positives = 58/90 (64%), Gaps = 5/90 (5%)

Query: 59  NKLYLRRHVGTYTHTPSYRSVPGASKPL----HSLDARYCKICGKHYSNSSNLKQHIRLI 114
           N++  RR + T     S  +   +S+P     HSLD R C  CG+ YS+ SNL+QHI LI
Sbjct: 169 NEIIKRRKIETNYWQQSTETT-SSSQPEKQRCHSLDPRPCPECGRQYSSLSNLRQHIELI 227

Query: 115 HLPGILFCPLCQKCFKNKLYLRRHVISFHE 144
           H PG + CPLC K FKNKLYLRRH ISFHE
Sbjct: 228 HKPGCVVCPLCGKTFKNKLYLRRHFISFHE 257

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91091380|ref|XP_973130.1| PREDICTED: similar to broadZ1 [Tribolium castaneum] gi|270014160|gb|EFA10608.1| hypothetical protein TcasGA2_TC012869 [Tribolium castaneum]

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 37/62 (59%), Positives = 48/62 (77%)

Query: 83  SKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVISF 142
           ++ LHSLD R C+ CG+ YSN SNL+QH++LIH P  + CP+C+K FK  LYLRRHV+S 
Sbjct: 255 TRKLHSLDPRPCEECGRVYSNLSNLRQHMKLIHYPTYVQCPVCKKPFKTDLYLRRHVMSA 314

Query: 143 HE 144
           HE
Sbjct: 315 HE 316

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332030135|gb|EGI69929.1| Broad-complex core protein isoform 6 [Acromyrmex echinatior]

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 38/59 (64%), Positives = 46/59 (77%)

Query: 86  LHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVISFHE 144
           LHSLD R C +C + YSN SNL+QH+RLIH P  + CPLC K FK KLYL+RH++SFHE
Sbjct: 288 LHSLDPRPCPVCNRMYSNLSNLRQHMRLIHNPQSVTCPLCNKPFKTKLYLKRHLVSFHE 346

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307205693|gb|EFN83955.1| Broad-complex core protein isoform 6 [Harpegnathos saltator]

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 38/59 (64%), Positives = 46/59 (77%)

Query: 86  LHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVISFHE 144
           LHSLD R C +C + YSN SNL+QH+RLIH P  + CPLC K FK KLYL+RH++SFHE
Sbjct: 287 LHSLDPRPCPVCNRMYSNLSNLRQHMRLIHNPQSVTCPLCNKPFKTKLYLKRHLVSFHE 345

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322786994|gb|EFZ13218.1| hypothetical protein SINV_06487 [Solenopsis invicta]

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 38/59 (64%), Positives = 46/59 (77%)

Query: 86  LHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVISFHE 144
           LHSLD R C +C + YSN SNL+QH+RLIH P  + CPLC K FK KLYL+RH++SFHE
Sbjct: 288 LHSLDPRPCPVCNRMYSNLSNLRQHMRLIHNPQSVTCPLCNKPFKTKLYLKRHLVSFHE 346

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340727383|ref|XP_003402024.1| PREDICTED: hypothetical protein LOC100651778 isoform 2 [Bombus terrestris] gi|350402787|ref|XP_003486604.1| PREDICTED: hypothetical protein LOC100744799 isoform 2 [Bombus impatiens]

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 38/59 (64%), Positives = 46/59 (77%)

Query: 86  LHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVISFHE 144
           LHSLD R C +C + YSN SNL+QH+RLIH P  + CPLC K FK KLYL+RH++SFHE
Sbjct: 302 LHSLDPRPCPVCNRMYSNLSNLRQHMRLIHNPQSVTCPLCNKPFKTKLYLKRHLVSFHE 360

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307186118|gb|EFN71843.1| Broad-complex core protein isoform 6 [Camponotus floridanus]

 Score = 82.8 bits (203), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 37/59 (62%), Positives = 46/59 (77%)

Query: 86  LHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVISFHE 144
           LHSLD R C +C + YSN SNL+QH+RLIH P  + CPLC K FK KLYL+RH++SFH+
Sbjct: 288 LHSLDPRPCPVCNRMYSNLSNLRQHMRLIHNPQSVTCPLCNKPFKTKLYLKRHLVSFHD 346

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|401403075|ref|XP_003881403.1| zinc finger protein 467, related [Neospora caninum Liverpool] gi|325115815|emb|CBZ51370.1| zinc finger protein 467, related [Neospora caninum Liverpool]

 Score = 71.2 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/124 (33%), Positives = 58/124 (46%), Gaps = 18/124 (14%)

Query: 22   CKICGKHYSNSSNLKQHIRLIHLPGILF-CPLCQKCFKNKL-YLRRHVGTYTHTPSYRSV 79
            C +C   +S + NL  HIR +H     F CP+C K F  K   L +H+         ++V
Sbjct: 1450 CPLCNGLFSRNYNLHHHIRAVHEGAKPFVCPICHKTFSYKRGNLEQHI---------QAV 1500

Query: 80   PGASKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILF-CPLCQKCFKNKLYLRRH 138
                KP        CKICG+ +S   NL QH + +H     F CP C + F  K +L RH
Sbjct: 1501 HRGEKPFQ------CKICGRAFSQKGNLSQHTQAVHAGNRPFQCPQCSRSFSRKSHLHRH 1554

Query: 139  VISF 142
            + S 
Sbjct: 1555 ITSL 1558

Source: Neospora caninum Liverpool

Species: Neospora caninum

Genus: Neospora

Family: Sarcocystidae

Order: Eucoccidiorida

Class: Coccidia

Phylum: Apicomplexa

Superkingdom: Eukaryota

>gi|157132286|ref|XP_001662540.1| hypothetical protein AaeL_AAEL012388 [Aedes aegypti] gi|108871220|gb|EAT35445.1| AAEL012388-PA [Aedes aegypti]

 Score = 70.1 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/67 (47%), Positives = 42/67 (62%)

Query: 77  RSVPGASKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLR 136
           RS        + L  R C +C + YSN SNL+QH+RLIH P  + CP+CQK F ++LYL+
Sbjct: 323 RSNRSTDDKTNCLTPRCCPVCSRLYSNVSNLRQHMRLIHNPTAVCCPICQKHFNSELYLK 382

Query: 137 RHVISFH 143
           RH  S H
Sbjct: 383 RHYSSIH 389

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347966312|ref|XP_321449.4| AGAP001646-PA [Anopheles gambiae str. PEST] gi|333470116|gb|EAA01325.4| AGAP001646-PA [Anopheles gambiae str. PEST]

 Score = 69.7 bits (169), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 39/55 (70%)

Query: 89  LDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVISFH 143
           L  R C +C + YSN SNL+QH+RLIH P  + CP+CQK F ++LYL+RH  S H
Sbjct: 348 LTPRCCPVCSRLYSNVSNLRQHMRLIHNPTAVCCPICQKHFNSELYLKRHYSSIH 402

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	147
UNIPROTKB|H9L030	207	H9L030 "Uncharacterized protei	0.836	0.594	0.378	3.4e-13
UNIPROTKB|Q8IZ20	524	ZNF683 "Zinc finger protein 68	0.775	0.217	0.387	5.2e-13
UNIPROTKB|H9L0Z9	631	LOC100857807 "Uncharacterized	0.823	0.191	0.362	5.6e-13
RGD|1564241	547	Zfp846 "zinc finger protein 84	0.782	0.210	0.377	2.5e-12
ZFIN|ZDB-GENE-110914-70	392	si:ch211-234c11.2 "si:ch211-23	0.789	0.295	0.363	3.4e-12
ZFIN|ZDB-GENE-110913-123	429	si:dkey-14o6.4 "si:dkey-14o6.4	0.789	0.270	0.363	4.2e-12
UNIPROTKB|F1NC19	402	GFI1 "Uncharacterized protein"	0.748	0.273	0.379	6.1e-12
FB|FBgn0261679	630	CG42726 [Drosophila melanogast	0.836	0.195	0.335	6.7e-12
UNIPROTKB|Q5DWN0	422	GFI1 "Zinc finger protein Gfi-	0.748	0.260	0.379	6.8e-12
UNIPROTKB|Q99684	422	GFI1 "Zinc finger protein Gfi-	0.748	0.260	0.379	6.8e-12

UNIPROTKB|H9L030 H9L030 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 53/140 (37%), Positives = 70/140 (50%)

Query:    14 LHSLDARY-CKICGKHYSNSSNLKQHIRLIHLPGILF-CPLCQKCFKNKLYLRRHVGTYT 71
             +H+ D  Y C ICGK Y +SS+LK H R IH     F CP+C K FK+   L RH   +T
Sbjct:    31 IHTGDRPYKCPICGKGYKSSSHLKSHQR-IHTGERPFKCPVCGKSFKSSSNLIRHQHIHT 89

Query:    72 HTPSYR------SVPGAS-----KPLHSLDARY-CKICGKHYSNSSNLKQHIRLIHLPGI 119
                 ++      S   +S     + +H+ +  Y C  CGK +  SSNL  H R IH    
Sbjct:    90 GERPFKCPECEESFKSSSDLIYHQSIHTGERPYKCPECGKSFRRSSNLTIHHR-IHTGER 148

Query:   120 LF-CPLCQKCFKNKLYLRRH 138
              F CP C K FK+  +L  H
Sbjct:   149 PFKCPQCPKSFKSSSHLIYH 168

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q8IZ20 ZNF683 "Zinc finger protein 683" [Homo sapiens (taxid:9606)]

 Score = 180 (68.4 bits), Expect = 5.2e-13, P = 5.2e-13
 Identities = 48/124 (38%), Positives = 65/124 (52%)

Query:    22 CKICGKHYSNSSNLKQHIRLIHLPGILF-CPLCQKCFKNKLYLRRH----VGTYTHTPSY 76
             C ICGK +   SNLK H+R +H     F C LCQK F    +L++H     G   H  S 
Sbjct:   324 CNICGKSFGQLSNLKVHLR-VHSGERPFQCALCQKSFTQLAHLQKHHLVHTGERPHKCSI 382

Query:    77 RSVPGASKPLHSLDA-RYCKICGKHYSNSSNLKQHIRLIHLPGILF-CPLCQKCFKNKLY 134
               VPG +    S  A R  ++C K +S+SSNLK H+RL H     F C +C+  F   ++
Sbjct:   383 PWVPGRNH-WKSFQAWREREVCHKRFSSSSNLKTHLRL-HSGARPFQCSVCRSRFTQHIH 440

Query:   135 LRRH 138
             L+ H
Sbjct:   441 LKLH 444

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|H9L0Z9 LOC100857807 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 181 (68.8 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 46/127 (36%), Positives = 63/127 (49%)

Query:    15 HSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILF-CPLCQKCFKNKLYLRRHVGTYTHT 73
             H L    C  CGK +   S L  H R IH+    F CP C K FK    L++H  T+T  
Sbjct:   412 HQLIHTRCSACGKAFKKCSELNLH-RRIHMEERPFQCPACGKSFKRSSDLKQHQRTHTEE 470

Query:    74 PSYRSVPGASKPLHSLDARY-CKICGKHYSNSSNLKQHIRLIHLPGILF-CPLCQKCFKN 131
               Y+     +  +H+ +  + C  CGK + +SS LK+H R IH+    F CP C K FK 
Sbjct:   471 RHYKCCECGTX-IHTGERPFQCPECGKSFKSSSALKRHQR-IHIGQRRFQCPECAKSFKR 528

Query:   132 KLYLRRH 138
             + +L  H
Sbjct:   529 RSHLNIH 535

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

RGD|1564241 Zfp846 "zinc finger protein 846" [Rattus norvegicus (taxid:10116)]

 Score = 174 (66.3 bits), Expect = 2.5e-12, P = 2.5e-12
 Identities = 51/135 (37%), Positives = 62/135 (45%)

Query:    22 CKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPG 81
             CK CGK +++S  L QHIR+        C  C + F    YLR HVG  TH+     + G
Sbjct:   248 CKECGKAFASSPRLSQHIRIHSGERPYICKECGRAFLTSSYLRNHVGR-THSGERPYICG 306

Query:    82 -ASKPLHSLD--ARY-----------CKICGKHYSNSSNLKQHIRLIH---LPGILFCPL 124
                K  HS     R+           CK CGK + NSS L  HIR  H   +P I  C  
Sbjct:   307 ECGKAFHSYSNLRRHVRTHSGERPYICKECGKAFLNSSYLHNHIRKTHSGEMPHI--CGE 364

Query:   125 CQKCFKNKLYLRRHV 139
             C K F    YLRRH+
Sbjct:   365 CGKVFHASSYLRRHL 379

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

ZFIN|ZDB-GENE-110914-70 si:ch211-234c11.2 "si:ch211-234c11.2" [Danio rerio (taxid:7955)]

 Score = 170 (64.9 bits), Expect = 3.4e-12, P = 3.4e-12
 Identities = 48/132 (36%), Positives = 67/132 (50%)

Query:    22 CKICGKHYSNSSNLKQHIRLIHLPGILF-CPLCQKCFKNKLYLRRHVGTYT-HTP----- 74
             C  CGK +S+SS+L QH+R IH     F CP C K F N  +L +H+  +T   P     
Sbjct:   152 CTQCGKSFSHSSSLNQHMR-IHTGEKPFTCPQCGKSFINSSHLNQHIMIHTGEKPFTCTQ 210

Query:    75 ---SYRSVPGASKPL--HSLDARY-CKICGKHYSNSSNLKQHIRLIHLPGILF-CPLCQK 127
                S+      +K +  H+ +  + C  CGK +S SS+L QHI +IH     F C  C K
Sbjct:   211 CGKSFNCSSSLNKHMRIHTGEKPFTCTQCGKSFSQSSSLNQHI-MIHTGKKPFTCTQCGK 269

Query:   128 CFKNKLYLRRHV 139
              F    YL+ H+
Sbjct:   270 SFSQSSYLKNHM 281

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

ZFIN|ZDB-GENE-110913-123 si:dkey-14o6.4 "si:dkey-14o6.4" [Danio rerio (taxid:7955)]

 Score = 170 (64.9 bits), Expect = 4.2e-12, P = 4.2e-12
 Identities = 48/132 (36%), Positives = 67/132 (50%)

Query:    22 CKICGKHYSNSSNLKQHIRLIHLPGILF-CPLCQKCFKNKLYLRRHVGTYT-HTP----- 74
             C  CGK +S+SS+L QH+R IH     F CP C K F N  +L +H+  +T   P     
Sbjct:   208 CTQCGKSFSHSSSLNQHMR-IHTGEKPFTCPQCGKSFINSSHLNQHIMIHTGEKPFTCTQ 266

Query:    75 ---SYRSVPGASKPL--HSLDARY-CKICGKHYSNSSNLKQHIRLIHLPGILF-CPLCQK 127
                S+      +K +  H+ +  + C  CGK +S SS+L QHI +IH     F C  C K
Sbjct:   267 CGKSFNCSSSLNKHMRIHTGEKPFTCTQCGKSFSQSSSLNQHI-MIHTGKKPFTCTQCGK 325

Query:   128 CFKNKLYLRRHV 139
              F    YL+ H+
Sbjct:   326 SFSQSSYLKNHM 337

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1NC19 GFI1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 168 (64.2 bits), Expect = 6.1e-12, P = 6.1e-12
 Identities = 49/129 (37%), Positives = 64/129 (49%)

Query:    12 KPLHSLDARY-CKICGKHYSNSSNLKQHIRLIHLPGILF-CPLCQKCFKNKLYLRRHVGT 69
             K +HS +  + CKICGK +  SS L  H+ LIH     + C  C K F  K  +++H  T
Sbjct:   283 KAVHSQERSFDCKICGKSFKRSSTLSTHL-LIHSDTRPYPCQYCGKRFHQKSDMKKH--T 339

Query:    70 YTHTPSYRSVPGASKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCF 129
             + HT          KP H      C++CGK +S SSNL  H R         C LC K F
Sbjct:   340 FIHT--------GEKP-HK-----CQVCGKAFSQSSNLITHSRKHTGFKPFGCDLCGKGF 385

Query:   130 KNKLYLRRH 138
             + K+ LRRH
Sbjct:   386 QRKVDLRRH 394

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0007638 "mechanosensory behavior" evidence=IEA

GO:0009996 "negative regulation of cell fate specification" evidence=IEA

GO:0010956 "negative regulation of calcidiol 1-monooxygenase activity" evidence=IEA

GO:0010977 "negative regulation of neuron projection development" evidence=IEA

GO:0016363 "nuclear matrix" evidence=IEA

GO:0016604 "nuclear body" evidence=IEA

GO:0017053 "transcriptional repressor complex" evidence=IEA

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=IEA

GO:0034121 "regulation of toll-like receptor signaling pathway" evidence=IEA

GO:0042472 "inner ear morphogenesis" evidence=IEA

GO:0042491 "auditory receptor cell differentiation" evidence=IEA

GO:0042660 "positive regulation of cell fate specification" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0045165 "cell fate commitment" evidence=IEA

GO:0070105 "positive regulation of interleukin-6-mediated signaling pathway" evidence=IEA

GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA

FB|FBgn0261679 CG42726 [Drosophila melanogaster (taxid:7227)]

 Score = 171 (65.3 bits), Expect = 6.7e-12, P = 6.7e-12
 Identities = 46/137 (33%), Positives = 67/137 (48%)

Query:    22 CKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTYT---HT-PSYR 77
             CK CG+ ++ SS+LK H+          C +C K FK  + L+RH+ T+    H  P  +
Sbjct:   103 CKECGRRFATSSHLKYHLMSHEKQSKHSCSVCHKSFKQPIVLQRHMLTHNQEKHLCPICQ 162

Query:    78 SVPGASKPL------HS-LDARY-CKICGKHYSNSSNLKQHIRLIHLPGIL-FCPLCQKC 128
              V      L      HS L  ++ C++C KH+ N +NL QH+R      I   C +CQK 
Sbjct:   163 KVFRRKSSLASHLAIHSDLGLQFKCELCSKHFQNKANLNQHLRKHDKNNIRHMCKVCQKS 222

Query:   129 FKNKLYLRRHVISFHEN 145
             F  +  LR H+   H N
Sbjct:   223 FLRQTTLRLHM-KRHSN 238

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q5DWN0 GFI1 "Zinc finger protein Gfi-1" [Canis lupus familiaris (taxid:9615)]

 Score = 168 (64.2 bits), Expect = 6.8e-12, P = 6.8e-12
 Identities = 49/129 (37%), Positives = 64/129 (49%)

Query:    12 KPLHSLDARY-CKICGKHYSNSSNLKQHIRLIHLPGILF-CPLCQKCFKNKLYLRRHVGT 69
             K +HS +  + CKICGK +  SS L  H+ LIH     + C  C K F  K  +++H  T
Sbjct:   303 KAVHSQERSFDCKICGKSFKRSSTLSTHL-LIHSDTRPYPCQYCGKRFHQKSDMKKH--T 359

Query:    70 YTHTPSYRSVPGASKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCF 129
             + HT          KP H      C++CGK +S SSNL  H R         C LC K F
Sbjct:   360 FIHT--------GEKP-HK-----CQVCGKAFSQSSNLITHSRKHTGFKPFGCDLCGKGF 405

Query:   130 KNKLYLRRH 138
             + K+ LRRH
Sbjct:   406 QRKVDLRRH 414

GO:0010977 "negative regulation of neuron projection development" evidence=ISS

GO:0017053 "transcriptional repressor complex" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q99684 GFI1 "Zinc finger protein Gfi-1" [Homo sapiens (taxid:9606)]

 Score = 168 (64.2 bits), Expect = 6.8e-12, P = 6.8e-12
 Identities = 49/129 (37%), Positives = 64/129 (49%)

Query:    12 KPLHSLDARY-CKICGKHYSNSSNLKQHIRLIHLPGILF-CPLCQKCFKNKLYLRRHVGT 69
             K +HS +  + CKICGK +  SS L  H+ LIH     + C  C K F  K  +++H  T
Sbjct:   303 KAVHSQERSFDCKICGKSFKRSSTLSTHL-LIHSDTRPYPCQYCGKRFHQKSDMKKH--T 359

Query:    70 YTHTPSYRSVPGASKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCF 129
             + HT          KP H      C++CGK +S SSNL  H R         C LC K F
Sbjct:   360 FIHT--------GEKP-HK-----CQVCGKAFSQSSNLITHSRKHTGFKPFGCDLCGKGF 405

Query:   130 KNKLYLRRH 138
             + K+ LRRH
Sbjct:   406 QRKVDLRRH 414

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0007638 "mechanosensory behavior" evidence=IEA

GO:0009996 "negative regulation of cell fate specification" evidence=IEA

GO:0042472 "inner ear morphogenesis" evidence=IEA

GO:0042491 "auditory receptor cell differentiation" evidence=IEA

GO:0042660 "positive regulation of cell fate specification" evidence=IEA

GO:0045165 "cell fate commitment" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0017053 "transcriptional repressor complex" evidence=IDA

GO:0010977 "negative regulation of neuron projection development" evidence=IDA

GO:0016604 "nuclear body" evidence=IDA

GO:0070105 "positive regulation of interleukin-6-mediated signaling pathway" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0071222 "cellular response to lipopolysaccharide" evidence=IEP

GO:0034121 "regulation of toll-like receptor signaling pathway" evidence=IDA

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0016363 "nuclear matrix" evidence=IDA

GO:0016032 "viral reproduction" evidence=TAS

GO:0000083 "regulation of transcription involved in G1/S phase of mitotic cell cycle" evidence=TAS

GO:0010956 "negative regulation of calcidiol 1-monooxygenase activity" evidence=IDA

GO:0010957 "negative regulation of vitamin D biosynthetic process" evidence=IC

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	147
KOG2462|consensus	279		99.96
KOG2462|consensus	279		99.95
KOG1074|consensus	958		99.86
KOG3576|consensus	267		99.84
KOG1074|consensus	958		99.82
KOG3623|consensus	1007		99.79
KOG3608|consensus	467		99.69
KOG3576|consensus	267		99.67
KOG3608|consensus	467		99.64
KOG3623|consensus	1007		99.6
PHA00733	128	hypothetical protein	99.46
PLN03086	567	PRLI-interacting factor K; Provisional	99.44
PHA02768	55	hypothetical protein; Provisional	99.23
PHA00733	128	hypothetical protein	99.22
PHA02768	55	hypothetical protein; Provisional	99.17
KOG3993|consensus	500		99.15
PLN03086	567	PRLI-interacting factor K; Provisional	99.05
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	99.01
PHA00616	44	hypothetical protein	99.01
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.73
PHA00732	79	hypothetical protein	98.7
PHA00616	44	hypothetical protein	98.67
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.63
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.61
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.57
PHA00732	79	hypothetical protein	98.56
KOG3993|consensus	500		98.54
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	98.49
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	98.37
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	98.35
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	98.29
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.26
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	98.1
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	98.07
smart00355	26	ZnF_C2H2 zinc finger.	97.95
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	97.94
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.91
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.9
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.86
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	97.73
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.67
smart00355	26	ZnF_C2H2 zinc finger.	97.41
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	97.36
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	97.33
PRK04860	160	hypothetical protein; Provisional	97.15
KOG2785|consensus	390		97.13
KOG1146|consensus	1406		96.96
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	96.9
PRK04860	160	hypothetical protein; Provisional	96.88
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	96.88
KOG2231|consensus	669		96.69
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	96.51
KOG1146|consensus	1406		96.44
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	96.42
KOG4173|consensus	253		96.37
COG4049	65	Uncharacterized protein containing archaeal-type C	96.3
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	96.26
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	96.09
COG5048	467	FOG: Zn-finger [General function prediction only]	95.86
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	95.81
KOG2482|consensus	423		95.6
COG5236	493	Uncharacterized conserved protein, contains RING Z	94.55
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	94.49
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	94.19
PF02892	45	zf-BED: BED zinc finger; InterPro: IPR003656 Zinc	93.83
COG4049	65	Uncharacterized protein containing archaeal-type C	93.72
COG5048	467	FOG: Zn-finger [General function prediction only]	93.57
TIGR00373	158	conserved hypothetical protein TIGR00373. This fam	93.51
KOG2807|consensus	378		93.1
KOG2893|consensus	341		93.05
PF05443	132	ROS_MUCR: ROS/MUCR transcriptional regulator prote	92.91
PF04959	214	ARS2: Arsenite-resistance protein 2; InterPro: IPR	92.89
COG5236	493	Uncharacterized conserved protein, contains RING Z	92.46
PRK06266	178	transcription initiation factor E subunit alpha; V	92.28
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	92.22
PHA00626	59	hypothetical protein	91.96
smart00734	26	ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18	91.35
cd00729	34	rubredoxin_SM Rubredoxin, Small Modular nonheme ir	90.9
PRK00464	154	nrdR transcriptional regulator NrdR; Validated	90.67
COG2888	61	Predicted Zn-ribbon RNA-binding protein with a fun	90.57
KOG4173|consensus	253		90.26
KOG2186|consensus	276		90.22
smart00614	50	ZnF_BED BED zinc finger. DNA-binding domain in chr	90.17
TIGR02605	52	CxxC_CxxC_SSSS putative regulatory protein, FmdB f	90.17
COG1592	166	Rubrerythrin [Energy production and conversion]	90.01
PF13717	36	zinc_ribbon_4: zinc-ribbon domain	89.8
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	89.74
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	89.65
TIGR00373	158	conserved hypothetical protein TIGR00373. This fam	89.65
smart00834	41	CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C	89.6
smart00659	44	RPOLCX RNA polymerase subunit CX. present in RNA p	89.54
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	89.4
PF06524	314	NOA36: NOA36 protein; InterPro: IPR010531 This fam	89.04
smart00531	147	TFIIE Transcription initiation factor IIE.	88.9
COG4957	148	Predicted transcriptional regulator [Transcription	88.79
PRK06266	178	transcription initiation factor E subunit alpha; V	88.52
KOG2482|consensus	423		88.12
KOG2893|consensus	341		88.01
KOG4727|consensus	193		87.65
KOG2186|consensus	276		87.63
PRK00398	46	rpoP DNA-directed RNA polymerase subunit P; Provis	87.29
KOG4167|consensus	907		87.19
PF12907	40	zf-met2: Zinc-binding	86.88
KOG2231|consensus	669		86.8
TIGR02300	129	FYDLN_acid conserved hypothetical protein TIGR0230	86.34
KOG2785|consensus	390		85.82
PRK14890	59	putative Zn-ribbon RNA-binding protein; Provisiona	85.11
COG2879	65	Uncharacterized small protein [Function unknown]	84.15
PF09845	131	DUF2072: Zn-ribbon containing protein (DUF2072); I	83.69
PF05443	132	ROS_MUCR: ROS/MUCR transcriptional regulator prote	82.87
KOG2593|consensus	436		82.68
COG1996	49	RPC10 DNA-directed RNA polymerase, subunit RPC10 (	82.07
COG5151	421	SSL1 RNA polymerase II transcription initiation/nu	81.69
PF07975	51	C1_4: TFIIH C1-like domain; InterPro: IPR004595 Al	81.27
PF13451	49	zf-trcl: Probable zinc-binding domain	81.24
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	81.19
KOG3408|consensus	129		81.08
PF07754	24	DUF1610: Domain of unknown function (DUF1610); Int	80.15

>KOG2462|consensus

Probab=99.96  E-value=1.1e-29  Score=161.27  Aligned_cols=106  Identities=35%  Similarity=0.557  Sum_probs=79.8

Q ss_pred             cCcccccccccccCChHHHHHHHHHhcCCCCcCCCCchhhhcChHHHHHHHhhhcCCCCccCCCCCCCCCCCcCCccccc
Q psy8937          17 LDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDARYCKI   96 (147)
Q Consensus        17 ~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~   96 (147)
                      .+.+.|.+||+.|...-+|..|+++|.  .++.|.+||+.|...+.|+-|+++|+                |||||.|+.
T Consensus       159 ~ka~~C~~C~K~YvSmpALkMHirTH~--l~c~C~iCGKaFSRPWLLQGHiRTHT----------------GEKPF~C~h  220 (279)
T KOG2462|consen  159 KKAFSCKYCGKVYVSMPALKMHIRTHT--LPCECGICGKAFSRPWLLQGHIRTHT----------------GEKPFSCPH  220 (279)
T ss_pred             cccccCCCCCceeeehHHHhhHhhccC--CCcccccccccccchHHhhccccccc----------------CCCCccCCc
Confidence            566777777777777777777776444  56677777777777777777776666                567777888


Q ss_pred             ccccCCChHHHHHHHHHHhCCCcccCCCchhccCChHHHHhHHH
Q psy8937          97 CGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVI  140 (147)
Q Consensus        97 c~~~~~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~  140 (147)
                      |+++|.++++|+.|+++|.+.|.|+|..|+|.|++++.|.+|..
T Consensus       221 C~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~E  264 (279)
T KOG2462|consen  221 CGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSE  264 (279)
T ss_pred             ccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhhh
Confidence            88888888888888888888888888888888888888887764

>KOG2462|consensus

Probab=99.95  E-value=1.5e-28  Score=156.11  Aligned_cols=113  Identities=32%  Similarity=0.500  Sum_probs=102.9

Q ss_pred             ccCcccccccccccCChHHHHHHHHHhcCC---CCcCCCCchhhhcChHHHHHHHhhhcCCCCccCCCCCCCCCCCcCCc
Q psy8937          16 SLDARYCKICGKHYSNSSNLKQHIRLIHLP---GILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDAR   92 (147)
Q Consensus        16 ~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~---~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (147)
                      ....|+|+.||+.+.+.++|.+|...|..-   +.+.|..|++.|.+...|++|+++|.                  -++
T Consensus       127 ~~~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~------------------l~c  188 (279)
T KOG2462|consen  127 KHPRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT------------------LPC  188 (279)
T ss_pred             cCCceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC------------------CCc
Confidence            356799999999999999999999866543   67899999999999999999997766                  235


Q ss_pred             ccccccccCCChHHHHHHHHHHhCCCcccCCCchhccCChHHHHhHHHhhhccC
Q psy8937          93 YCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVISFHENA  146 (147)
Q Consensus        93 ~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  146 (147)
                      +|.+||+.|...+-|+-|+++|+|||||.|+.|++.|..+++|+.||++|-+.|
T Consensus       189 ~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K  242 (279)
T KOG2462|consen  189 ECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVK  242 (279)
T ss_pred             ccccccccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHHhhcCCc
Confidence            699999999999999999999999999999999999999999999999998765

>KOG1074|consensus

Probab=99.86  E-value=8.4e-23  Score=146.04  Aligned_cols=54  Identities=26%  Similarity=0.418  Sum_probs=50.7

Q ss_pred             CcccccccccCCChHHHHHHHHHHhCCCcccCCCchhccCChHHHHhHHHhhhc
Q psy8937          91 ARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVISFHE  144 (147)
Q Consensus        91 ~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  144 (147)
                      +..|.+|.+.+.=.++|+.|+++|+||+||+|.+||+.|..+.+|+.||.+|-.
T Consensus       605 PNqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka  658 (958)
T KOG1074|consen  605 PNQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKA  658 (958)
T ss_pred             ccceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhccccccc
Confidence            457999999999999999999999999999999999999999999999998743

>KOG3576|consensus

Probab=99.84  E-value=1.2e-21  Score=119.80  Aligned_cols=115  Identities=23%  Similarity=0.480  Sum_probs=103.7

Q ss_pred             ccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCchhhhcChHHHHHHHhhhcCCCCccCCCCCCCCCCCcCCcccc
Q psy8937          16 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDARYCK   95 (147)
Q Consensus        16 ~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~C~   95 (147)
                      +...|.|.+|++.|.....|.+|+.-|...+.+.|..||+.|...-+|++|+++|+                +.+||+|.
T Consensus       114 d~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rtht----------------gvrpykc~  177 (267)
T KOG3576|consen  114 DQDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHT----------------GVRPYKCS  177 (267)
T ss_pred             CCCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhcccc----------------Cccccchh
Confidence            46889999999999999999999996666699999999999999999999998888                55778899


Q ss_pred             cccccCCChHHHHHHHHHHhC-----------CCcccCCCchhccCChHHHHhHHHhhhccC
Q psy8937          96 ICGKHYSNSSNLKQHIRLIHL-----------PGILFCPLCQKCFKNKLYLRRHVISFHENA  146 (147)
Q Consensus        96 ~c~~~~~~~~~l~~H~~~~~~-----------~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  146 (147)
                      .|+++|.+...|..|.+..++           +|.|.|+.||..-.....+..|+..||+.-
T Consensus       178 ~c~kaftqrcsleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~S  239 (267)
T KOG3576|consen  178 LCEKAFTQRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPFS  239 (267)
T ss_pred             hhhHHHHhhccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCCCC
Confidence            999999999999999987664           467999999999999999999999998753

>KOG1074|consensus

Probab=99.82  E-value=8e-21  Score=136.10  Aligned_cols=56  Identities=29%  Similarity=0.613  Sum_probs=52.8

Q ss_pred             cccccccccCCChHHHHHHHHHHhCCCcccCCCchhccCChHHHHhHHHhhhccCC
Q psy8937          92 RYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVISFHENAT  147 (147)
Q Consensus        92 ~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~  147 (147)
                      ..|..|++.|..+++|..|+++|.++|+|.|..|++.|..+..|..||.+|++..|
T Consensus       880 h~C~vCgk~FsSSsALqiH~rTHtg~KPF~C~fC~~aFttrgnLKvHMgtH~w~q~  935 (958)
T KOG1074|consen  880 HVCNVCGKQFSSSAALEIHMRTHTGPKPFFCHFCEEAFTTRGNLKVHMGTHMWVQP  935 (958)
T ss_pred             hhhccchhcccchHHHHHhhhcCCCCCCccchhhhhhhhhhhhhhhhhccccccCC
Confidence            35999999999999999999999999999999999999999999999999988643

>KOG3623|consensus

Probab=99.79  E-value=3.7e-20  Score=131.27  Aligned_cols=122  Identities=25%  Similarity=0.407  Sum_probs=104.7

Q ss_pred             cCcccccccccccCChHHHHHHHHHhcCC--CCcCCCCchhhhcChHHHHHHHhhhcCCCCccCCCCCCCCCCCcCCccc
Q psy8937          17 LDARYCKICGKHYSNSSNLKQHIRLIHLP--GILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDARYC   94 (147)
Q Consensus        17 ~~~~~C~~C~~~f~~~~~l~~h~~~~~~~--~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~C   94 (147)
                      .....|++|++.+.....|+.|+...|..  ..|.|..|..+|.+...|.+||..|.....-   ....+.....+.|+|
T Consensus       208 sqlltcpycdrgykrltslkeHikyrhekne~nfsC~lCsytFAyRtQLErhm~~hkpg~dq---a~sltqsa~lRKFKC  284 (1007)
T KOG3623|consen  208 SQLLTCPYCDRGYKRLTSLKEHIKYRHEKNEPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQ---AISLTQSALLRKFKC  284 (1007)
T ss_pred             hhhhcchhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhhhhhhHHHHHHHHHhhcCCCcc---cccccchhhhccccc
Confidence            45678999999999999999999987776  5689999999999999999999876543222   123333446788999


Q ss_pred             ccccccCCChHHHHHHHHHHhCCCcccCCCchhccCChHHHHhHHHh
Q psy8937          95 KICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVIS  141 (147)
Q Consensus        95 ~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~  141 (147)
                      ..|+++|..+..|+.|+++|.|||||.|+.|+|.|+...++.-||..
T Consensus       285 tECgKAFKfKHHLKEHlRIHSGEKPfeCpnCkKRFSHSGSySSHmSS  331 (1007)
T KOG3623|consen  285 TECGKAFKFKHHLKEHLRIHSGEKPFECPNCKKRFSHSGSYSSHMSS  331 (1007)
T ss_pred             cccchhhhhHHHHHhhheeecCCCCcCCcccccccccCCcccccccc
Confidence            99999999999999999999999999999999999999998888865

>KOG3608|consensus

Probab=99.69  E-value=4.5e-17  Score=107.43  Aligned_cols=132  Identities=18%  Similarity=0.334  Sum_probs=68.0

Q ss_pred             CCCccCccCcccccccccccCChHHHHHHHHHhcCC--CCcCCCCchhhhcChHHHHHHHhhhcCCC--Ccc--------
Q psy8937          10 GSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLP--GILFCPLCQKCFKNKLYLRRHVGTYTHTP--SYR--------   77 (147)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~--~~~~C~~C~~~f~~~~~l~~H~~~~~~~~--~~~--------   77 (147)
                      +.+.+++++..-|+.||.-|.+...|..|.+--..-  ++|.|..|.+.|.++..|..|+..|-..-  |..        
T Consensus       198 H~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn~ykCplCdmtc~~~s  277 (467)
T KOG3608|consen  198 HIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVNCYKCPLCDMTCSSAS  277 (467)
T ss_pred             HHHhcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhhcccccccccCCCChH
Confidence            334555666666666666666666666665533322  45666666666666666666664443210  000        


Q ss_pred             --CCCCCCCCCCCcCCcccccccccCCChHHHHHHHHHHhCCCcccCCC--chhccCChHHHHhHHHhhh
Q psy8937          78 --SVPGASKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPL--CQKCFKNKLYLRRHVISFH  143 (147)
Q Consensus        78 --~~~~~~~~~~~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~h  143 (147)
                        ....... ....++|+|..|...+...+.|..|..+|. +..|.|..  |...|..+..|++|++.+|
T Consensus       278 sL~~H~r~r-Hs~dkpfKCd~Cd~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~~q~~~H~~evh  345 (467)
T KOG3608|consen  278 SLTTHIRYR-HSKDKPFKCDECDTRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRTYTQMRRHFLEVH  345 (467)
T ss_pred             HHHHHHHhh-hccCCCccccchhhhhccHHHHHHHHHhcc-ccceecCCCCCcHHHHHHHHHHHHHHHhc
Confidence              0000000 013455555555555555555555555444 44555543  5555555556666665555

>KOG3576|consensus

Probab=99.67  E-value=1.3e-17  Score=102.23  Aligned_cols=84  Identities=27%  Similarity=0.545  Sum_probs=77.7

Q ss_pred             CCcCCCCchhhhcChHHHHHHHhhhcCCCCccCCCCCCCCCCCcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCc
Q psy8937          46 GILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC  125 (147)
Q Consensus        46 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C  125 (147)
                      ..+.|.+|++.|.....|.+|+..|.                ..+.+-|..||+.|...-.|.+|.++|+|.+||+|+.|
T Consensus       116 d~ftCrvCgK~F~lQRmlnrh~kch~----------------~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c  179 (267)
T KOG3576|consen  116 DSFTCRVCGKKFGLQRMLNRHLKCHS----------------DVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLC  179 (267)
T ss_pred             CeeeeehhhhhhhHHHHHHHHhhhcc----------------HHHHHHHhhccCcccchhhhhhhhccccCccccchhhh
Confidence            56899999999999999999998776                44667799999999999999999999999999999999


Q ss_pred             hhccCChHHHHhHHHhhhcc
Q psy8937         126 QKCFKNKLYLRRHVISFHEN  145 (147)
Q Consensus       126 ~~~f~~~~~l~~H~~~~h~~  145 (147)
                      ++.|.++-+|..|++..||-
T Consensus       180 ~kaftqrcsleshl~kvhgv  199 (267)
T KOG3576|consen  180 EKAFTQRCSLESHLKKVHGV  199 (267)
T ss_pred             hHHHHhhccHHHHHHHHcCc
Confidence            99999999999999998874

>KOG3608|consensus

Probab=99.64  E-value=8e-16  Score=101.62  Aligned_cols=111  Identities=23%  Similarity=0.420  Sum_probs=94.3

Q ss_pred             CcccccccccccCChHHHHHHHHHhcCC-CCcCCCCchhhhcChHHHHHHHhhhcCCCCccCCCCCCCCCCCcCCccccc
Q psy8937          18 DARYCKICGKHYSNSSNLKQHIRLIHLP-GILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDARYCKI   96 (147)
Q Consensus        18 ~~~~C~~C~~~f~~~~~l~~h~~~~~~~-~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~   96 (147)
                      +-|+|+.|+.+....+.|..|++..|.. +||+|+.|...|.+++.|.+|.+.|.                 +-.|.|..
T Consensus       262 n~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS-----------------~~~y~C~h  324 (467)
T KOG3608|consen  262 NCYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHS-----------------KTVYQCEH  324 (467)
T ss_pred             hcccccccccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhcc-----------------ccceecCC
Confidence            4678888888888888888888887776 88999999999999999999987544                 23467877


Q ss_pred             --ccccCCChHHHHHHHHHHh---CCCcccCCCchhccCChHHHHhHHHhhhcc
Q psy8937          97 --CGKHYSNSSNLKQHIRLIH---LPGILFCPLCQKCFKNKLYLRRHVISFHEN  145 (147)
Q Consensus        97 --c~~~~~~~~~l~~H~~~~~---~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~  145 (147)
                        |..++.+..++..|++.++   .+-+|.|-.|++.|.+..+|.+|+...|+-
T Consensus       325 ~~C~~s~r~~~q~~~H~~evhEg~np~~Y~CH~Cdr~ft~G~~L~~HL~kkH~f  378 (467)
T KOG3608|consen  325 PDCHYSVRTYTQMRRHFLEVHEGNNPILYACHCCDRFFTSGKSLSAHLMKKHGF  378 (467)
T ss_pred             CCCcHHHHHHHHHHHHHHHhccCCCCCceeeecchhhhccchhHHHHHHHhhcc
Confidence              9999999999999999887   245699999999999999999999998874

>KOG3623|consensus

Probab=99.60  E-value=3.4e-16  Score=111.57  Aligned_cols=81  Identities=26%  Similarity=0.407  Sum_probs=76.2

Q ss_pred             ccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCchhhhcChHHHHHHHhhhcCCCCccCCCCCCCCCCCcCCcccc
Q psy8937          16 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDARYCK   95 (147)
Q Consensus        16 ~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~C~   95 (147)
                      +...|.|++|+++|...+.|.+|.-.|.+.+||+|.+|.+.|+-+..|..|++.|.                |||||.|.
T Consensus       891 e~gmyaCDqCDK~FqKqSSLaRHKYEHsGqRPyqC~iCkKAFKHKHHLtEHkRLHS----------------GEKPfQCd  954 (1007)
T KOG3623|consen  891 EDGMYACDQCDKAFQKQSSLARHKYEHSGQRPYQCIICKKAFKHKHHLTEHKRLHS----------------GEKPFQCD  954 (1007)
T ss_pred             ccccchHHHHHHHHHhhHHHHHhhhhhcCCCCcccchhhHhhhhhhhhhhhhhhcc----------------CCCcchhh
Confidence            56789999999999999999999999999999999999999999999999999888                66888899


Q ss_pred             cccccCCChHHHHHHHH
Q psy8937          96 ICGKHYSNSSNLKQHIR  112 (147)
Q Consensus        96 ~c~~~~~~~~~l~~H~~  112 (147)
                      .|++.|..+..+-.||.
T Consensus       955 KClKRFSHSGSYSQHMN  971 (1007)
T KOG3623|consen  955 KCLKRFSHSGSYSQHMN  971 (1007)
T ss_pred             hhhhhcccccchHhhhc
Confidence            99999999999998886

>PHA00733 hypothetical protein

Probab=99.46  E-value=1.1e-13  Score=81.33  Aligned_cols=88  Identities=26%  Similarity=0.361  Sum_probs=69.8

Q ss_pred             CCCcCCCCchhhhcChHHHHHHHhhhcCCCCccCCCCCCCCCCCcCCcccccccccCCChHHHHHHHHHHhCCCcccCCC
Q psy8937          45 PGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPL  124 (147)
Q Consensus        45 ~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~  124 (147)
                      .+++.|.+|+..|.....|..+.-.....           .....++|.|..|++.|.....|..|++.+  +.+|.|++
T Consensus        38 ~~~~~~~~~~~~~~~~~~l~~~~~l~~~~-----------~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~~~~C~~  104 (128)
T PHA00733         38 QKRLIRAVVKTLIYNPQLLDESSYLYKLL-----------TSKAVSPYVCPLCLMPFSSSVSLKQHIRYT--EHSKVCPV  104 (128)
T ss_pred             hhhHHHHHHhhhccChhhhcchHHHHhhc-----------ccCCCCCccCCCCCCcCCCHHHHHHHHhcC--CcCccCCC
Confidence            47888999999988877776663211111           011457889999999999999999999875  45799999


Q ss_pred             chhccCChHHHHhHHHhhhcc
Q psy8937         125 CQKCFKNKLYLRRHVISFHEN  145 (147)
Q Consensus       125 C~~~f~~~~~l~~H~~~~h~~  145 (147)
                      |++.|.....|.+|+..+|+-
T Consensus       105 CgK~F~~~~sL~~H~~~~h~~  125 (128)
T PHA00733        105 CGKEFRNTDSTLDHVCKKHNI  125 (128)
T ss_pred             CCCccCCHHHHHHHHHHhcCc
Confidence            999999999999999998873

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.44  E-value=3.1e-13  Score=95.94  Aligned_cols=106  Identities=21%  Similarity=0.485  Sum_probs=87.1

Q ss_pred             cCcccccccccccCChHHHHHHHHHhcCCCCcCCCCchhhhcChHHHHHHHhhhcCCCCccCCCCCCCCCCCcCCccccc
Q psy8937          17 LDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDARYCKI   96 (147)
Q Consensus        17 ~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~   96 (147)
                      ++.+.|+.|++.|. ...|..|+..+|  .++.|+ |+..+ ....|..|+..+.                .++++.|..
T Consensus       451 ~~H~~C~~Cgk~f~-~s~LekH~~~~H--kpv~Cp-Cg~~~-~R~~L~~H~~thC----------------p~Kpi~C~f  509 (567)
T PLN03086        451 KNHVHCEKCGQAFQ-QGEMEKHMKVFH--EPLQCP-CGVVL-EKEQMVQHQASTC----------------PLRLITCRF  509 (567)
T ss_pred             ccCccCCCCCCccc-hHHHHHHHHhcC--CCccCC-CCCCc-chhHHHhhhhccC----------------CCCceeCCC
Confidence            46679999999996 678999999876  789999 99765 5678999986555                557788999


Q ss_pred             ccccCCC----------hHHHHHHHHHHhCCCcccCCCchhccCChHHHHhHHHhhhcc
Q psy8937          97 CGKHYSN----------SSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVISFHEN  145 (147)
Q Consensus        97 c~~~~~~----------~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~  145 (147)
                      |+..+..          .+.|..|.... +.+++.|..||+.|..+ .|..|+...|..
T Consensus       510 C~~~v~~g~~~~d~~d~~s~Lt~HE~~C-G~rt~~C~~Cgk~Vrlr-dm~~H~~~~h~~  566 (567)
T PLN03086        510 CGDMVQAGGSAMDVRDRLRGMSEHESIC-GSRTAPCDSCGRSVMLK-EMDIHQIAVHQK  566 (567)
T ss_pred             CCCccccCccccchhhhhhhHHHHHHhc-CCcceEccccCCeeeeh-hHHHHHHHhhcC
Confidence            9998852          35899998884 88999999999988876 788998887764

>PHA02768 hypothetical protein; Provisional

Probab=99.23  E-value=3.8e-12  Score=62.63  Aligned_cols=43  Identities=21%  Similarity=0.308  Sum_probs=39.8

Q ss_pred             cccccccccCCChHHHHHHHHHHhCCCcccCCCchhccCChHHHH
Q psy8937          92 RYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLR  136 (147)
Q Consensus        92 ~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~  136 (147)
                      |.|+.||+.|...+.|..|++.|.  ++|+|..|++.|.+.+.|.
T Consensus         6 y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          6 YECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEYI   48 (55)
T ss_pred             cCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceecccceeE
Confidence            679999999999999999999988  6899999999999887764

>PHA00733 hypothetical protein

Probab=99.22  E-value=1.6e-11  Score=72.24  Aligned_cols=83  Identities=19%  Similarity=0.378  Sum_probs=68.0

Q ss_pred             ccCcccccccccccCChHHHHHH--HH---HhcCCCCcCCCCchhhhcChHHHHHHHhhhcCCCCccCCCCCCCCCCCcC
Q psy8937          16 SLDARYCKICGKHYSNSSNLKQH--IR---LIHLPGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLD   90 (147)
Q Consensus        16 ~~~~~~C~~C~~~f~~~~~l~~h--~~---~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~   90 (147)
                      .++.+.|.+|...|.....|..+  +.   .++...+|.|+.|++.|.....|..|+..+.                  .
T Consensus        37 ~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h~------------------~   98 (128)
T PHA00733         37 EQKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYTE------------------H   98 (128)
T ss_pred             hhhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcCC------------------c
Confidence            47889999999999888777665  22   1344689999999999999999999986421                  2


Q ss_pred             CcccccccccCCChHHHHHHHHHHhC
Q psy8937          91 ARYCKICGKHYSNSSNLKQHIRLIHL  116 (147)
Q Consensus        91 ~~~C~~c~~~~~~~~~l~~H~~~~~~  116 (147)
                      ++.|..|++.|.....|..|+...++
T Consensus        99 ~~~C~~CgK~F~~~~sL~~H~~~~h~  124 (128)
T PHA00733         99 SKVCPVCGKEFRNTDSTLDHVCKKHN  124 (128)
T ss_pred             CccCCCCCCccCCHHHHHHHHHHhcC
Confidence            46799999999999999999987765

>PHA02768 hypothetical protein; Provisional

Probab=99.17  E-value=1.1e-11  Score=60.98  Aligned_cols=44  Identities=20%  Similarity=0.292  Sum_probs=39.7

Q ss_pred             CcccccccccccCChHHHHHHHHHhcCCCCcCCCCchhhhcChHHH
Q psy8937          18 DARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYL   63 (147)
Q Consensus        18 ~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l   63 (147)
                      ..|.|+.||+.|...++|..|++.|+  ++++|..|++.|...+.|
T Consensus         4 ~~y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l   47 (55)
T PHA02768          4 LGYECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEY   47 (55)
T ss_pred             cccCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceeccccee
Confidence            46899999999999999999999877  689999999999877665

>KOG3993|consensus

Probab=99.15  E-value=1e-11  Score=84.11  Aligned_cols=99  Identities=22%  Similarity=0.348  Sum_probs=73.6

Q ss_pred             cCcccccccccccCChHHHHHHHHHhcCCCCcCCCCchhhhcChHHHHHHHhhhcCCCCcc--------CC---------
Q psy8937          17 LDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYR--------SV---------   79 (147)
Q Consensus        17 ~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~--------~~---------   79 (147)
                      ...|+|..|-..|.+.-.|.+|.-..-....|+|++|++.|....||..|.+.|...+...        ..         
T Consensus       265 iGdyiCqLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~e  344 (500)
T KOG3993|consen  265 IGDYICQLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQE  344 (500)
T ss_pred             HHHHHHHHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhh
Confidence            3569999999999999999998753333378999999999999999999998774322111        00         


Q ss_pred             CCCCCCCCCcCCcccccccccCCChHHHHHHHHHHh
Q psy8937          80 PGASKPLHSLDARYCKICGKHYSNSSNLKQHIRLIH  115 (147)
Q Consensus        80 ~~~~~~~~~~~~~~C~~c~~~~~~~~~l~~H~~~~~  115 (147)
                      .........+..|.|..|++.|....-|+.|+..|+
T Consensus       345 a~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq  380 (500)
T KOG3993|consen  345 AERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQ  380 (500)
T ss_pred             ccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhh
Confidence            000111134457899999999999999999987776

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.05  E-value=2.1e-10  Score=81.92  Aligned_cols=107  Identities=16%  Similarity=0.353  Sum_probs=79.1

Q ss_pred             cCcccccccccccCChHHHHHHHHHhcCC--------------------CCcCCCCchhhhcChHHHHHHHhhhcCCCCc
Q psy8937          17 LDARYCKICGKHYSNSSNLKQHIRLIHLP--------------------GILFCPLCQKCFKNKLYLRRHVGTYTHTPSY   76 (147)
Q Consensus        17 ~~~~~C~~C~~~f~~~~~l~~h~~~~~~~--------------------~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~   76 (147)
                      ...-.|+-|...... ..|..|... ...                    +.+.|+.|++.|. ...|..|+..++     
T Consensus       405 ~~~V~C~NC~~~i~l-~~l~lHe~~-C~r~~V~Cp~~~Cg~v~~r~el~~H~~C~~Cgk~f~-~s~LekH~~~~H-----  476 (567)
T PLN03086        405 VDTVECRNCKHYIPS-RSIALHEAY-CSRHNVVCPHDGCGIVLRVEEAKNHVHCEKCGQAFQ-QGEMEKHMKVFH-----  476 (567)
T ss_pred             CCeEECCCCCCccch-hHHHHHHhh-CCCcceeCCcccccceeeccccccCccCCCCCCccc-hHHHHHHHHhcC-----
Confidence            344568888886554 556678763 322                    2356889999996 577999987653     


Q ss_pred             cCCCCCCCCCCCcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCchhccC----------ChHHHHhHHHhhhccC
Q psy8937          77 RSVPGASKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFK----------NKLYLRRHVISFHENA  146 (147)
Q Consensus        77 ~~~~~~~~~~~~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C~~~f~----------~~~~l~~H~~~~h~~~  146 (147)
                                   +++.|+ |++.+ ....|..|+..|...+++.|+.|++.|.          ....|..|..+. |.+
T Consensus       477 -------------kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~C-G~r  540 (567)
T PLN03086        477 -------------EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESIC-GSR  540 (567)
T ss_pred             -------------CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHhc-CCc
Confidence                         345699 99755 6799999999999999999999999995          245889998873 554


Q ss_pred             C
Q psy8937         147 T  147 (147)
Q Consensus       147 ~  147 (147)
                      |
T Consensus       541 t  541 (567)
T PLN03086        541 T  541 (567)
T ss_pred             c
Confidence            3

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=99.01  E-value=2.3e-10  Score=48.43  Aligned_cols=26  Identities=38%  Similarity=0.683  Sum_probs=23.9

Q ss_pred             HHHHHHHHHhCCCcccCCCchhccCC
Q psy8937         106 NLKQHIRLIHLPGILFCPLCQKCFKN  131 (147)
Q Consensus       106 ~l~~H~~~~~~~~~~~C~~C~~~f~~  131 (147)
                      +|..|++.|.++++|.|+.|++.|.+
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence            47899999999999999999999974

...

>PHA00616 hypothetical protein

Probab=99.01  E-value=2.1e-10  Score=53.85  Aligned_cols=27  Identities=26%  Similarity=0.518  Sum_probs=13.6

Q ss_pred             ccCCCchhccCChHHHHhHHHhhhccC
Q psy8937         120 LFCPLCQKCFKNKLYLRRHVISFHENA  146 (147)
Q Consensus       120 ~~C~~C~~~f~~~~~l~~H~~~~h~~~  146 (147)
                      |+|+.||+.|..++.|.+|++.|||++
T Consensus         2 YqC~~CG~~F~~~s~l~~H~r~~hg~~   28 (44)
T PHA00616          2 YQCLRCGGIFRKKKEVIEHLLSVHKQN   28 (44)
T ss_pred             CccchhhHHHhhHHHHHHHHHHhcCCC
Confidence            445555555555555555555555443

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.73  E-value=2.9e-08  Score=49.69  Aligned_cols=50  Identities=32%  Similarity=0.482  Sum_probs=41.3

Q ss_pred             cccccccccCCChHHHHHHHHHHhC--CCcccCCCchhccCChHHHHhHHHhhhc
Q psy8937          92 RYCKICGKHYSNSSNLKQHIRLIHL--PGILFCPLCQKCFKNKLYLRRHVISFHE  144 (147)
Q Consensus        92 ~~C~~c~~~~~~~~~l~~H~~~~~~--~~~~~C~~C~~~f~~~~~l~~H~~~~h~  144 (147)
                      |.|+.|++ ..+...|..|....+.  .+.+.|++|...+.  .+|.+||.++|+
T Consensus         3 f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H~   54 (54)
T PF05605_consen    3 FTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQHR   54 (54)
T ss_pred             cCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhcC
Confidence            67999999 5667889999887664  35799999998755  489999999885

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PHA00732 hypothetical protein

Probab=98.70  E-value=9e-09  Score=55.36  Aligned_cols=47  Identities=36%  Similarity=0.615  Sum_probs=38.7

Q ss_pred             CcccccccccCCChHHHHHHHHHHhCCCcccCCCchhccCChHHHHhHHHhh
Q psy8937          91 ARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVISF  142 (147)
Q Consensus        91 ~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~  142 (147)
                      +|.|..|++.|.....|..|++.++.  ++.|+.|++.|.   .|.+|+.++
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~--~~~C~~CgKsF~---~l~~H~~~~   47 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHT--LTKCPVCNKSYR---RLNQHFYSQ   47 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccC--CCccCCCCCEeC---Chhhhhccc
Confidence            46799999999999999999985332  368999999998   477887654

>PHA00616 hypothetical protein

Probab=98.67  E-value=1.4e-08  Score=47.74  Aligned_cols=34  Identities=18%  Similarity=0.346  Sum_probs=28.7

Q ss_pred             cccccccccccCChHHHHHHHHHhcCCCCcCCCC
Q psy8937          19 ARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPL   52 (147)
Q Consensus        19 ~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~   52 (147)
                      +|+|..||+.|...+.|..|++.+|+.++++|+.
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~~   34 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLEY   34 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCccceeE
Confidence            5788888888888888888888888888887764

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.63  E-value=1.5e-08  Score=42.84  Aligned_cols=26  Identities=38%  Similarity=0.683  Sum_probs=23.2

Q ss_pred             HHHHHHHHhcCCCCcCCCCchhhhcC
Q psy8937          34 NLKQHIRLIHLPGILFCPLCQKCFKN   59 (147)
Q Consensus        34 ~l~~h~~~~~~~~~~~C~~C~~~f~~   59 (147)
                      +|..|++.|.++++|.|+.|++.|.+
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence            58899999999999999999998863

...

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.61  E-value=1.5e-07  Score=47.15  Aligned_cols=51  Identities=29%  Similarity=0.489  Sum_probs=40.7

Q ss_pred             CcccccccccccCChHHHHHHHHHhcCC--CCcCCCCchhhhcChHHHHHHHhhhc
Q psy8937          18 DARYCKICGKHYSNSSNLKQHIRLIHLP--GILFCPLCQKCFKNKLYLRRHVGTYT   71 (147)
Q Consensus        18 ~~~~C~~C~~~f~~~~~l~~h~~~~~~~--~~~~C~~C~~~f~~~~~l~~H~~~~~   71 (147)
                      +.|.|++|++ ..+...|..|....|..  +.+.||+|...+.  .+|..|+..++
T Consensus         1 ~~f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    1 DSFTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             CCcCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence            3689999999 56678899998887775  6789999998654  48999986543

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.57  E-value=3.7e-08  Score=40.39  Aligned_cols=23  Identities=39%  Similarity=0.817  Sum_probs=19.6

Q ss_pred             ccCCCchhccCChHHHHhHHHhh
Q psy8937         120 LFCPLCQKCFKNKLYLRRHVISF  142 (147)
Q Consensus       120 ~~C~~C~~~f~~~~~l~~H~~~~  142 (147)
                      |.|+.|++.|.....|.+|++.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            67888999999999999998873

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PHA00732 hypothetical protein

Probab=98.56  E-value=3.7e-08  Score=53.01  Aligned_cols=46  Identities=35%  Similarity=0.618  Sum_probs=38.1

Q ss_pred             cccccccccccCChHHHHHHHHHhcCCCCcCCCCchhhhcChHHHHHHHhh
Q psy8937          19 ARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGT   69 (147)
Q Consensus        19 ~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~   69 (147)
                      +|.|+.|++.|.....|+.|++.+|.  ++.|+.|++.|.   .+..|+.+
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~--~~~C~~CgKsF~---~l~~H~~~   46 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHT--LTKCPVCNKSYR---RLNQHFYS   46 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccC--CCccCCCCCEeC---Chhhhhcc
Confidence            58899999999999999999985343  358999999998   47778743

>KOG3993|consensus

Probab=98.54  E-value=1.8e-08  Score=68.81  Aligned_cols=82  Identities=28%  Similarity=0.555  Sum_probs=68.1

Q ss_pred             CcCCCCchhhhcChHHHHHHHhhhcCCCCccCCCCCCCCCCCcCCcccccccccCCChHHHHHHHHHHhC----------
Q psy8937          47 ILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHL----------  116 (147)
Q Consensus        47 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~~~~~~~l~~H~~~~~~----------  116 (147)
                      .|.|..|...|...=.|.+|.-...                .--.|+|+.|++.|+=..+|..|++=|.-          
T Consensus       267 dyiCqLCK~kYeD~F~LAQHrC~RI----------------V~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~  330 (500)
T KOG3993|consen  267 DYICQLCKEKYEDAFALAQHRCPRI----------------VHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSP  330 (500)
T ss_pred             HHHHHHHHHhhhhHHHHhhccCCee----------------EEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCC
Confidence            3789999999999999999974333                22347899999999999999999987651          


Q ss_pred             -----------------------CCcccCCCchhccCChHHHHhHHHhhhc
Q psy8937         117 -----------------------PGILFCPLCQKCFKNKLYLRRHVISFHE  144 (147)
Q Consensus       117 -----------------------~~~~~C~~C~~~f~~~~~l~~H~~~~h~  144 (147)
                                             +..|.|..|+|.|.+...|+.|+.+|+.
T Consensus       331 P~k~~~~~rae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~  381 (500)
T KOG3993|consen  331 PPKQAVETRAEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQR  381 (500)
T ss_pred             ChhhhhhhhhhhhhccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhc
Confidence                                   1238899999999999999999988874

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=98.49  E-value=9.8e-08  Score=39.42  Aligned_cols=24  Identities=42%  Similarity=0.928  Sum_probs=19.4

Q ss_pred             ccCCCchhccCChHHHHhHHHhhh
Q psy8937         120 LFCPLCQKCFKNKLYLRRHVISFH  143 (147)
Q Consensus       120 ~~C~~C~~~f~~~~~l~~H~~~~h  143 (147)
                      |.|++|++.|.+...|.+|++++|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            678999999999999999998876

...

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=98.37  E-value=1.6e-07  Score=40.03  Aligned_cols=26  Identities=31%  Similarity=0.390  Sum_probs=22.7

Q ss_pred             cccCCCchhccCChHHHHhHHHhhhc
Q psy8937         119 ILFCPLCQKCFKNKLYLRRHVISFHE  144 (147)
Q Consensus       119 ~~~C~~C~~~f~~~~~l~~H~~~~h~  144 (147)
                      +|.|..|++.|.....|..|++.|++
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~~   26 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHCS   26 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhcC
Confidence            57899999999999999999988764

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=98.35  E-value=2.9e-07  Score=52.03  Aligned_cols=23  Identities=35%  Similarity=0.762  Sum_probs=13.1

Q ss_pred             cccCCCchhccCChHHHHhHHHh
Q psy8937         119 ILFCPLCQKCFKNKLYLRRHVIS  141 (147)
Q Consensus       119 ~~~C~~C~~~f~~~~~l~~H~~~  141 (147)
                      .+.|..|++.|.....|..||+.
T Consensus        50 ~~~C~~C~~~f~s~~~l~~Hm~~   72 (100)
T PF12756_consen   50 SFRCPYCNKTFRSREALQEHMRS   72 (100)
T ss_dssp             SEEBSSSS-EESSHHHHHHHHHH
T ss_pred             CCCCCccCCCCcCHHHHHHHHcC
Confidence            35566666666666666666654

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.29  E-value=8e-07  Score=42.72  Aligned_cols=32  Identities=25%  Similarity=0.411  Sum_probs=23.1

Q ss_pred             CCCcccCCCchhccCChHHHHhHHHhhhccCC
Q psy8937         116 LPGILFCPLCQKCFKNKLYLRRHVISFHENAT  147 (147)
Q Consensus       116 ~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~  147 (147)
                      .++|..|++|+..+.+..+|.+||.+.|+.+|
T Consensus        21 S~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   21 SEQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             TS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             cCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            45778899999999999999999999998875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.26  E-value=6.6e-07  Score=36.56  Aligned_cols=22  Identities=55%  Similarity=1.001  Sum_probs=16.0

Q ss_pred             ccccccccccCChHHHHHHHHH
Q psy8937          20 RYCKICGKHYSNSSNLKQHIRL   41 (147)
Q Consensus        20 ~~C~~C~~~f~~~~~l~~h~~~   41 (147)
                      |+|+.|++.|.....|..|++.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            5677777777777777777764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=98.10  E-value=2.3e-06  Score=35.10  Aligned_cols=24  Identities=46%  Similarity=0.905  Sum_probs=15.7

Q ss_pred             ccccccccccCChHHHHHHHHHhc
Q psy8937          20 RYCKICGKHYSNSSNLKQHIRLIH   43 (147)
Q Consensus        20 ~~C~~C~~~f~~~~~l~~h~~~~~   43 (147)
                      |.|++|++.|.+...|..|+..+|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            567777777777777777776553

...

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=98.07  E-value=3.5e-06  Score=34.74  Aligned_cols=24  Identities=33%  Similarity=0.604  Sum_probs=19.5

Q ss_pred             ccCCCchhccCChHHHHhHHHhhhc
Q psy8937         120 LFCPLCQKCFKNKLYLRRHVISFHE  144 (147)
Q Consensus       120 ~~C~~C~~~f~~~~~l~~H~~~~h~  144 (147)
                      |+|+.|++... ...|.+|++++|+
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H~   24 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHHP   24 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHHS
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhCc
Confidence            68999999888 8899999999885

>smart00355 ZnF_C2H2 zinc finger

Probab=97.95  E-value=8.5e-06  Score=33.93  Aligned_cols=24  Identities=38%  Similarity=0.690  Sum_probs=20.4

Q ss_pred             ccCCCchhccCChHHHHhHHHhhh
Q psy8937         120 LFCPLCQKCFKNKLYLRRHVISFH  143 (147)
Q Consensus       120 ~~C~~C~~~f~~~~~l~~H~~~~h  143 (147)
                      |.|..|++.|.....|..|+++|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhc
Confidence            578999999999999999998654

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=97.94  E-value=3.4e-06  Score=35.84  Aligned_cols=24  Identities=38%  Similarity=0.631  Sum_probs=17.2

Q ss_pred             cccccccccccCChHHHHHHHHHh
Q psy8937          19 ARYCKICGKHYSNSSNLKQHIRLI   42 (147)
Q Consensus        19 ~~~C~~C~~~f~~~~~l~~h~~~~   42 (147)
                      +|.|..|++.|....+|..|++.+
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h   24 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSH   24 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHh
Confidence            467777777777777777777644

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.91  E-value=2.9e-06  Score=56.42  Aligned_cols=52  Identities=31%  Similarity=0.469  Sum_probs=44.4

Q ss_pred             cCCccccc--ccccCCChHHHHHHHHHHh-------------------CCCcccCCCchhccCChHHHHhHHH
Q psy8937          89 LDARYCKI--CGKHYSNSSNLKQHIRLIH-------------------LPGILFCPLCQKCFKNKLYLRRHVI  140 (147)
Q Consensus        89 ~~~~~C~~--c~~~~~~~~~l~~H~~~~~-------------------~~~~~~C~~C~~~f~~~~~l~~H~~  140 (147)
                      +|||+|+.  |++.|.....|+-|+..-+                   ..|||.|++|+|.++....|.-|+.
T Consensus       347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             CceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceeccc
Confidence            59999976  9999999999999987533                   2389999999999999999888764

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.90  E-value=7.5e-06  Score=46.18  Aligned_cols=53  Identities=28%  Similarity=0.609  Sum_probs=22.4

Q ss_pred             cccccccccCChHHHHHHHHHhcCC-----------------------CCcCCCCchhhhcChHHHHHHHhhhcCC
Q psy8937          21 YCKICGKHYSNSSNLKQHIRLIHLP-----------------------GILFCPLCQKCFKNKLYLRRHVGTYTHT   73 (147)
Q Consensus        21 ~C~~C~~~f~~~~~l~~h~~~~~~~-----------------------~~~~C~~C~~~f~~~~~l~~H~~~~~~~   73 (147)
                      .|..|+..|.....|..|+...|+.                       ..+.|..|+..|.+...|..|+..+.+.
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~l~~Hm~~~~H~   76 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGFDIPDQKYLVDPNRLLNYLRKKVKESFRCPYCNKTFRSREALQEHMRSKHHK   76 (100)
T ss_dssp             ------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHTTTT
T ss_pred             CccccccccccccccccccccccccccccccccccccccccccccccCCCCCCCccCCCCcCHHHHHHHHcCccCC
Confidence            4889999999999999999876652                       1367999999999999999999876544

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.86  E-value=7.9e-06  Score=54.42  Aligned_cols=68  Identities=25%  Similarity=0.338  Sum_probs=44.7

Q ss_pred             CCCCcCCCC--chhhhcChHHHHHHHhhhcCCCCccCCCCCC----CCCCCcCCcccccccccCCChHHHHHHHH
Q psy8937          44 LPGILFCPL--CQKCFKNKLYLRRHVGTYTHTPSYRSVPGAS----KPLHSLDARYCKICGKHYSNSSNLKQHIR  112 (147)
Q Consensus        44 ~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~----~~~~~~~~~~C~~c~~~~~~~~~l~~H~~  112 (147)
                      +++||+|++  |.+.|+..--|+-|+. |.+..+....--+.    -+....|||+|..|++.|.....|+-|+.
T Consensus       346 d~KpykCpV~gC~K~YknqnGLKYH~l-hGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         346 DGKPYKCPVEGCNKKYKNQNGLKYHML-HGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             cCceecCCCCCchhhhccccchhhhhh-ccccCcccCCCCCccccccccccCCceeccccchhhccCccceeccc
Confidence            347888875  8888888877888874 32222221111111    22335699999999999999999888754

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=97.73  E-value=1.7e-05  Score=32.94  Aligned_cols=23  Identities=35%  Similarity=0.797  Sum_probs=19.3

Q ss_pred             ccCCCchhccCChHHHHhHHHhh
Q psy8937         120 LFCPLCQKCFKNKLYLRRHVISF  142 (147)
Q Consensus       120 ~~C~~C~~~f~~~~~l~~H~~~~  142 (147)
                      |.|.+|++.|.....|..|++.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            56888999999999998888765

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.67  E-value=4.6e-05  Score=36.75  Aligned_cols=31  Identities=32%  Similarity=0.628  Sum_probs=14.8

Q ss_pred             ccCcccccccccccCChHHHHHHHHHhcCCC
Q psy8937          16 SLDARYCKICGKHYSNSSNLKQHIRLIHLPG   46 (147)
Q Consensus        16 ~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~   46 (147)
                      +..+-.|++|+..+.+..+|++|+...|..+
T Consensus        21 S~~PatCP~C~a~~~~srnLrRHle~~H~~k   51 (54)
T PF09237_consen   21 SEQPATCPICGAVIRQSRNLRRHLEIRHFKK   51 (54)
T ss_dssp             TS--EE-TTT--EESSHHHHHHHHHHHTTTS
T ss_pred             cCCCCCCCcchhhccchhhHHHHHHHHhccc
Confidence            3455556666666666666666665555443

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>smart00355 ZnF_C2H2 zinc finger

Probab=97.41  E-value=0.0002  Score=29.56  Aligned_cols=21  Identities=43%  Similarity=0.858  Sum_probs=13.5

Q ss_pred             ccccccccccCChHHHHHHHH
Q psy8937          20 RYCKICGKHYSNSSNLKQHIR   40 (147)
Q Consensus        20 ~~C~~C~~~f~~~~~l~~h~~   40 (147)
                      |.|..|++.|.....|..|++
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~   21 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMR   21 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHH
Confidence            456666666666666666665

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=97.36  E-value=7.7e-05  Score=31.56  Aligned_cols=23  Identities=30%  Similarity=0.709  Sum_probs=19.3

Q ss_pred             ccCCCchhccCChHHHHhHHHhh
Q psy8937         120 LFCPLCQKCFKNKLYLRRHVISF  142 (147)
Q Consensus       120 ~~C~~C~~~f~~~~~l~~H~~~~  142 (147)
                      |.|..|++.|.....|..|+++.
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~sk   24 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKSK   24 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTSH
T ss_pred             CCcccCCCCcCCHHHHHHHHccC
Confidence            67889999999999998888763

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=97.33  E-value=9.6e-05  Score=30.58  Aligned_cols=21  Identities=48%  Similarity=1.088  Sum_probs=14.9

Q ss_pred             ccccccccccCChHHHHHHHH
Q psy8937          20 RYCKICGKHYSNSSNLKQHIR   40 (147)
Q Consensus        20 ~~C~~C~~~f~~~~~l~~h~~   40 (147)
                      |.|.+|++.|.+...|+.|++
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~   21 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLR   21 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHT
T ss_pred             CCCCCCCCCcCCHHHHHHHHC
Confidence            467777777777777777765

>PRK04860 hypothetical protein; Provisional

Probab=97.15  E-value=0.00024  Score=43.60  Aligned_cols=39  Identities=21%  Similarity=0.456  Sum_probs=34.0

Q ss_pred             CCcccccccccCCChHHHHHHHHHHhCCCcccCCCchhccCCh
Q psy8937          90 DARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNK  132 (147)
Q Consensus        90 ~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~  132 (147)
                      -+|.|. |+.   ....+..|.+++.++++|.|..|+..|...
T Consensus       118 ~~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~  156 (160)
T PRK04860        118 FPYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFK  156 (160)
T ss_pred             EEEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEEe
Confidence            468897 987   677889999999999999999999988754

>KOG2785|consensus

Probab=97.13  E-value=0.0013  Score=45.24  Aligned_cols=51  Identities=20%  Similarity=0.298  Sum_probs=42.8

Q ss_pred             CcccccccccCCChHHHHHHHHHHhCC-----------------------CcccCCCch---hccCChHHHHhHHHh
Q psy8937          91 ARYCKICGKHYSNSSNLKQHIRLIHLP-----------------------GILFCPLCQ---KCFKNKLYLRRHVIS  141 (147)
Q Consensus        91 ~~~C~~c~~~~~~~~~l~~H~~~~~~~-----------------------~~~~C~~C~---~~f~~~~~l~~H~~~  141 (147)
                      |-.|..|++.+.+...-..|+..+++-                       .-+.|-.|+   +.|.+....++||.-
T Consensus       166 Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~~  242 (390)
T KOG2785|consen  166 PTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMRD  242 (390)
T ss_pred             CcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHhh
Confidence            345999999999999999999988852                       226688888   999999999999974

>KOG1146|consensus

Probab=96.96  E-value=0.00051  Score=53.99  Aligned_cols=120  Identities=16%  Similarity=0.184  Sum_probs=79.2

Q ss_pred             ccccccccCChHHHHHHHHHhcCC-CCcCCCCchhhhcChHHHHHHHhhhcCCCCcc---------CCCCCCCCCCCcCC
Q psy8937          22 CKICGKHYSNSSNLKQHIRLIHLP-GILFCPLCQKCFKNKLYLRRHVGTYTHTPSYR---------SVPGASKPLHSLDA   91 (147)
Q Consensus        22 C~~C~~~f~~~~~l~~h~~~~~~~-~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~---------~~~~~~~~~~~~~~   91 (147)
                      |..|+..+.....+..++..-+.. +-+.|+.|+..|+....|-.||++.+.+....         ............++
T Consensus       439 ~~~~e~~~~s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~p  518 (1406)
T KOG1146|consen  439 LTKAEPLLESKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGKP  518 (1406)
T ss_pred             ccchhhhhhhhcccccceeeeecccccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCCc
Confidence            444555555555554444433333 66788899888888888888887744332211         11111223335578


Q ss_pred             cccccccccCCChHHHHHHHHHHhC-------------------------------------------CCcccCCCchhc
Q psy8937          92 RYCKICGKHYSNSSNLKQHIRLIHL-------------------------------------------PGILFCPLCQKC  128 (147)
Q Consensus        92 ~~C~~c~~~~~~~~~l~~H~~~~~~-------------------------------------------~~~~~C~~C~~~  128 (147)
                      |.|..|...+.....|..|+.....                                           ...+.|.+|++.
T Consensus       519 ~~C~~C~~stttng~LsihlqS~~h~~~lee~~~~~g~~v~~~~~~v~s~~P~~ag~~~~ags~~pktkP~~~C~vc~ye  598 (1406)
T KOG1146|consen  519 YPCRACNYSTTTNGNLSIHLQSDLHRNELEEAEENAGEQVRLLPASVTSAVPEEAGLGPSAGSSGPKTKPSWRCEVCSYE  598 (1406)
T ss_pred             ccceeeeeeeecchHHHHHHHHHhhHHHHHHHHhccccchhhhhhhhcccCcccccCCCCCCCCCCCCCCCcchhhhcch
Confidence            8999999999999999988865320                                           023779999999


Q ss_pred             cCChHHHHhHHHh
Q psy8937         129 FKNKLYLRRHVIS  141 (147)
Q Consensus       129 f~~~~~l~~H~~~  141 (147)
                      .+-..+|+.||..
T Consensus       599 tniarnlrihmts  611 (1406)
T KOG1146|consen  599 TNIARNLRIHMTA  611 (1406)
T ss_pred             hhhhhcccccccc
Confidence            9988888888764

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=96.90  E-value=0.00019  Score=30.32  Aligned_cols=21  Identities=43%  Similarity=0.944  Sum_probs=14.8

Q ss_pred             ccccccccccCChHHHHHHHH
Q psy8937          20 RYCKICGKHYSNSSNLKQHIR   40 (147)
Q Consensus        20 ~~C~~C~~~f~~~~~l~~h~~   40 (147)
                      |.|..|++.|.+...+..|++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~   22 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMK   22 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTT
T ss_pred             CCcccCCCCcCCHHHHHHHHc
Confidence            567777777777777766654

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PRK04860 hypothetical protein; Provisional

Probab=96.88  E-value=0.00057  Score=41.98  Aligned_cols=40  Identities=20%  Similarity=0.409  Sum_probs=34.1

Q ss_pred             CcccccccccccCChHHHHHHHHHhcCCCCcCCCCchhhhcChH
Q psy8937          18 DARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKL   61 (147)
Q Consensus        18 ~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~   61 (147)
                      -+|.|. |+.   ....+.+|.+++.+.++|.|..|+..|....
T Consensus       118 ~~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~~  157 (160)
T PRK04860        118 FPYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFKG  157 (160)
T ss_pred             EEEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEEec
Confidence            469998 998   5677899999999999999999999886543

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=96.88  E-value=0.0008  Score=27.44  Aligned_cols=23  Identities=39%  Similarity=0.618  Sum_probs=12.4

Q ss_pred             ccccccccccCChHHHHHHHHHhc
Q psy8937          20 RYCKICGKHYSNSSNLKQHIRLIH   43 (147)
Q Consensus        20 ~~C~~C~~~f~~~~~l~~h~~~~~   43 (147)
                      |.|+.|+.... ...|..|++.+|
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            45666666555 556666666544

>KOG2231|consensus

Probab=96.69  E-value=0.0019  Score=47.92  Aligned_cols=108  Identities=27%  Similarity=0.571  Sum_probs=66.9

Q ss_pred             cccccccccccC---------------ChHHHHHHHHHhcCCCCcCCCCc----------hhhhcChHHHHHHHhhhcCC
Q psy8937          19 ARYCKICGKHYS---------------NSSNLKQHIRLIHLPGILFCPLC----------QKCFKNKLYLRRHVGTYTHT   73 (147)
Q Consensus        19 ~~~C~~C~~~f~---------------~~~~l~~h~~~~~~~~~~~C~~C----------~~~f~~~~~l~~H~~~~~~~   73 (147)
                      .+.|.+|++.|.               ..-.|+.|+..-|..  +.|..|          .+.| +...|..|+.  .+.
T Consensus        99 ~~~C~~C~~~~~~~~~~~~~~~c~~~~s~~~Lk~H~~~~H~~--~~c~lC~~~~kif~~e~k~Y-t~~el~~h~~--~gd  173 (669)
T KOG2231|consen   99 HHSCHICDRRFRALYNKKECLHCTEFKSVENLKNHMRDQHKL--HLCSLCLQNLKIFINERKLY-TRAELNLHLM--FGD  173 (669)
T ss_pred             hhhcCccccchhhhcccCCCccccchhHHHHHHHHHHHhhhh--hccccccccceeeeeeeehe-hHHHHHHHHh--cCC
Confidence            356777777773               667788888654543  333332          2333 3345666662  222


Q ss_pred             CCccCCCCCCCCCCCcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCc------hhccCChHHHHhHHHhhhc
Q psy8937          74 PSYRSVPGASKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC------QKCFKNKLYLRRHVISFHE  144 (147)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C------~~~f~~~~~l~~H~~~~h~  144 (147)
                      ...+       .  -..--.|..|...|.....|..|++.++    |.|..|      +..|.....|..|.+..|-
T Consensus       174 ~d~~-------s--~rGhp~C~~C~~~fld~~el~rH~~~~h----~~chfC~~~~~~neyy~~~~dLe~HfR~~Hf  237 (669)
T KOG2231|consen  174 PDDE-------S--CRGHPLCKFCHERFLDDDELYRHLRFDH----EFCHFCDYKTGQNEYYNDYDDLEEHFRKGHF  237 (669)
T ss_pred             Cccc-------c--ccCCccchhhhhhhccHHHHHHhhccce----eheeecCcccccchhcccchHHHHHhhhcCc
Confidence            2010       0  1111259999999999999999988655    445555      4667777899999888773

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=96.51  E-value=0.0028  Score=26.19  Aligned_cols=20  Identities=35%  Similarity=0.730  Sum_probs=11.4

Q ss_pred             ccCCCchhccCChHHHHhHHH
Q psy8937         120 LFCPLCQKCFKNKLYLRRHVI  140 (147)
Q Consensus       120 ~~C~~C~~~f~~~~~l~~H~~  140 (147)
                      ..|+.||+.| ....|.+|+.
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~   22 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEK   22 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHH
Confidence            3566666666 4445556654

>KOG1146|consensus

Probab=96.44  E-value=0.00062  Score=53.54  Aligned_cols=121  Identities=17%  Similarity=0.189  Sum_probs=80.7

Q ss_pred             ccCcccccccccccCChHHHHHHHHHhcC-------------------------CCCcCCCCchhhhcChHHHHHHHhhh
Q psy8937          16 SLDARYCKICGKHYSNSSNLKQHIRLIHL-------------------------PGILFCPLCQKCFKNKLYLRRHVGTY   70 (147)
Q Consensus        16 ~~~~~~C~~C~~~f~~~~~l~~h~~~~~~-------------------------~~~~~C~~C~~~f~~~~~l~~H~~~~   70 (147)
                      -.+.++|+.|+..|.....|..|++..|.                         .++|.|..|..++....+|..|++..
T Consensus       462 ~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~p~~C~~C~~stttng~LsihlqS~  541 (1406)
T KOG1146|consen  462 FFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGKPYPCRACNYSTTTNGNLSIHLQSD  541 (1406)
T ss_pred             ccccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCCcccceeeeeeeecchHHHHHHHHH
Confidence            34789999999999999999999998332                         24688999999999999999999653


Q ss_pred             cCCCCc------------------------cCC---CCCCCCCCCcCCcccccccccCCChHHHHHHHHHHhCCCc-ccC
Q psy8937          71 THTPSY------------------------RSV---PGASKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGI-LFC  122 (147)
Q Consensus        71 ~~~~~~------------------------~~~---~~~~~~~~~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~-~~C  122 (147)
                      .+....                        ...   .........+-.|.|..|....+-.-+|+.|+..-.-..+ .-|
T Consensus       542 ~h~~~lee~~~~~g~~v~~~~~~v~s~~P~~ag~~~~ags~~pktkP~~~C~vc~yetniarnlrihmtss~~s~~p~~~  621 (1406)
T KOG1146|consen  542 LHRNELEEAEENAGEQVRLLPASVTSAVPEEAGLGPSAGSSGPKTKPSWRCEVCSYETNIARNLRIHMTASPSSSPPSLV  621 (1406)
T ss_pred             hhHHHHHHHHhccccchhhhhhhhcccCcccccCCCCCCCCCCCCCCCcchhhhcchhhhhhccccccccCCCCCChHHH
Confidence            222110                        000   0001113344568899998887777788887765433333 445


Q ss_pred             CCchhccCChHHHH
Q psy8937         123 PLCQKCFKNKLYLR  136 (147)
Q Consensus       123 ~~C~~~f~~~~~l~  136 (147)
                      ..|+..+..-..+.
T Consensus       622 Lq~~it~~l~~~~~  635 (1406)
T KOG1146|consen  622 LQQNITSSLASLLG  635 (1406)
T ss_pred             hhhcchhhcccccc
Confidence            55655555544443

>smart00451 ZnF_U1 U1-like zinc finger

Probab=96.42  E-value=0.0025  Score=28.50  Aligned_cols=23  Identities=22%  Similarity=0.675  Sum_probs=17.2

Q ss_pred             cccCCCchhccCChHHHHhHHHh
Q psy8937         119 ILFCPLCQKCFKNKLYLRRHVIS  141 (147)
Q Consensus       119 ~~~C~~C~~~f~~~~~l~~H~~~  141 (147)
                      +|.|.+|++.|.....+..|+..
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHCh
Confidence            46788888888877777777764

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>KOG4173|consensus

Probab=96.37  E-value=0.0047  Score=39.06  Aligned_cols=79  Identities=23%  Similarity=0.442  Sum_probs=58.7

Q ss_pred             CcCCCC--chhhhcChHHHHHHHhhhcCCCCccCCCCCCCCCCCcCCcccccccccCCChHHHHHHHHHHh---------
Q psy8937          47 ILFCPL--CQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDARYCKICGKHYSNSSNLKQHIRLIH---------  115 (147)
Q Consensus        47 ~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~~~~~~~l~~H~~~~~---------  115 (147)
                      .+-|++  |...|........|.-..++.                   .|..|.+.|++..-|..|+..-+         
T Consensus        79 ~~~cqvagc~~~~d~lD~~E~hY~~~h~~-------------------sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~ve  139 (253)
T KOG4173|consen   79 AFACQVAGCCQVFDALDDYEHHYHTLHGN-------------------SCSFCKRAFPTGHLLDAHILEWHDSLFQALVE  139 (253)
T ss_pred             cccccccchHHHHhhhhhHHHhhhhcccc-------------------hhHHHHHhCCchhhhhHHHHHHHHHHHHHHHH
Confidence            355765  667777777777776322221                   49999999999999998886544         


Q ss_pred             -CCCcccC--CCchhccCChHHHHhHHHhhhc
Q psy8937         116 -LPGILFC--PLCQKCFKNKLYLRRHVISFHE  144 (147)
Q Consensus       116 -~~~~~~C--~~C~~~f~~~~~l~~H~~~~h~  144 (147)
                       |.-.|+|  +.|+..|.....-.+||...|.
T Consensus       140 RG~dMy~ClvEgCt~KFkT~r~RkdH~I~~Hk  171 (253)
T KOG4173|consen  140 RGQDMYQCLVEGCTEKFKTSRDRKDHMIRMHK  171 (253)
T ss_pred             cCccHHHHHHHhhhhhhhhhhhhhhHHHHhcc
Confidence             3446889  6799999999999999887764

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=96.30  E-value=0.0023  Score=31.48  Aligned_cols=24  Identities=38%  Similarity=0.657  Sum_probs=11.5

Q ss_pred             ccCCCchhccCChHHHHhHHHhhh
Q psy8937         120 LFCPLCQKCFKNKLYLRRHVISFH  143 (147)
Q Consensus       120 ~~C~~C~~~f~~~~~l~~H~~~~h  143 (147)
                      +.|+.|++.|....++.+|...-|
T Consensus        18 lrCPRC~~~FR~~K~Y~RHVNKaH   41 (65)
T COG4049          18 LRCPRCGMVFRRRKDYIRHVNKAH   41 (65)
T ss_pred             eeCCchhHHHHHhHHHHHHhhHHh
Confidence            444455555544444444444433

>TIGR00622 ssl1 transcription factor ssl1

Probab=96.26  E-value=0.0093  Score=34.22  Aligned_cols=101  Identities=15%  Similarity=0.272  Sum_probs=59.0

Q ss_pred             ccccccccccCChHHHHHHHHHhcCCCCcCCCCchhhhcChHHHHHHHhhhcC--CCCccCCCCCCCCCCCcCCcccccc
Q psy8937          20 RYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTYTH--TPSYRSVPGASKPLHSLDARYCKIC   97 (147)
Q Consensus        20 ~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~--~~~~~~~~~~~~~~~~~~~~~C~~c   97 (147)
                      |.|++|+-..              -..|..|+.|+-.......|.+-.  |+-  .+++...+.+.    ......|-.|
T Consensus         2 Y~CPrC~skv--------------C~LP~~CpiCgLtLVss~HLARSy--HHLfPl~~f~ev~~~~----~~~~~~C~~C   61 (112)
T TIGR00622         2 YFCPQCRAKV--------------CELPVECPICGLTLILSTHLARSY--HHLFPLKAFQEIPLEE----YNGSRFCFGC   61 (112)
T ss_pred             ccCCCCCCCc--------------cCCCCcCCcCCCEEeccchHHHhh--hccCCCcccccccccc----cCCCCcccCc
Confidence            6677776542              345788999998888887787654  321  22333222111    1111248888


Q ss_pred             cccCCChHHHHHHHHHHhCCCcccCCCchhccCChHHHHhHHHhh
Q psy8937          98 GKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVISF  142 (147)
Q Consensus        98 ~~~~~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~  142 (147)
                      ...|........  ........|.|+.|...|-..-++-.|-..|
T Consensus        62 ~~~f~~~~~~~~--~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh  104 (112)
T TIGR00622        62 QGPFPKPPVSPF--DELKDSHRYVCAVCKNVFCVDCDVFVHESLH  104 (112)
T ss_pred             CCCCCCcccccc--cccccccceeCCCCCCccccccchhhhhhcc
Confidence            888876431110  0012234688999999888777766666554

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=96.09  E-value=0.012  Score=33.82  Aligned_cols=25  Identities=28%  Similarity=0.461  Sum_probs=23.8

Q ss_pred             ccC----CCchhccCChHHHHhHHHhhhc
Q psy8937         120 LFC----PLCQKCFKNKLYLRRHVISFHE  144 (147)
Q Consensus       120 ~~C----~~C~~~f~~~~~l~~H~~~~h~  144 (147)
                      |.|    +.|++.+.+...|.+|++.+||
T Consensus        81 ~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg  109 (109)
T PF12013_consen   81 YRCQCDPPHCGYITRSKKTMRKHWRKEHG  109 (109)
T ss_pred             eeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence            779    9999999999999999999996

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=95.86  E-value=0.0012  Score=46.67  Aligned_cols=128  Identities=26%  Similarity=0.278  Sum_probs=86.3

Q ss_pred             CcccccccccccCChHHHHHHHH--HhcCC--CCcCCC--CchhhhcChHHHHHHHhhhcCCCCccCCCCCC--------
Q psy8937          18 DARYCKICGKHYSNSSNLKQHIR--LIHLP--GILFCP--LCQKCFKNKLYLRRHVGTYTHTPSYRSVPGAS--------   83 (147)
Q Consensus        18 ~~~~C~~C~~~f~~~~~l~~h~~--~~~~~--~~~~C~--~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~--------   83 (147)
                      ..+.|..|...|.....|..|.+  .|.+.  +++.|+  .|++.|.....+..|...+....+........        
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLL  367 (467)
T ss_pred             cCCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccccccccCcccccccc
Confidence            57899999999999999999999  68888  899999  79999999999999998776654332110000        


Q ss_pred             -----------CCCCCcCCccc--ccccccCCChHHHHHHHHHHhCCC--cccCCCchhccCChHHHHhHHHhhhcc
Q psy8937          84 -----------KPLHSLDARYC--KICGKHYSNSSNLKQHIRLIHLPG--ILFCPLCQKCFKNKLYLRRHVISFHEN  145 (147)
Q Consensus        84 -----------~~~~~~~~~~C--~~c~~~~~~~~~l~~H~~~~~~~~--~~~C~~C~~~f~~~~~l~~H~~~~h~~  145 (147)
                                 ......+.+.+  ..|...+.....+..|...+....  .+.+..|.+.|.....+..|++++...
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (467)
T COG5048         368 NNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHTNH  444 (467)
T ss_pred             CCCCccchhhccCccCCccccccccchhhhhccccccccccccccccCCcCCCCCcchhhccCcccccccccccccC
Confidence                       00001111112  224444455555555555555444  455678888888888888888776544

>smart00451 ZnF_U1 U1-like zinc finger

Probab=95.81  E-value=0.0082  Score=26.75  Aligned_cols=22  Identities=23%  Similarity=0.831  Sum_probs=16.0

Q ss_pred             cccccccccccCChHHHHHHHH
Q psy8937          19 ARYCKICGKHYSNSSNLKQHIR   40 (147)
Q Consensus        19 ~~~C~~C~~~f~~~~~l~~h~~   40 (147)
                      .|.|.+|++.|.....+..|+.
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~   24 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLK   24 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHC
Confidence            4677777777777777777765

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>KOG2482|consensus

Probab=95.60  E-value=0.068  Score=36.68  Aligned_cols=49  Identities=24%  Similarity=0.484  Sum_probs=39.9

Q ss_pred             ccccccccCCChHHHHHHHHHHhC---------------------------CCcccCCCchhccCChHHHHhHHHh
Q psy8937          93 YCKICGKHYSNSSNLKQHIRLIHL---------------------------PGILFCPLCQKCFKNKLYLRRHVIS  141 (147)
Q Consensus        93 ~C~~c~~~~~~~~~l~~H~~~~~~---------------------------~~~~~C~~C~~~f~~~~~l~~H~~~  141 (147)
                      .|-.|...+.+...|..|+...+.                           .+...|-+|...|-....|..||..
T Consensus       281 ~CLfC~~~~en~~~l~eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~e~~l~~hm~e  356 (423)
T KOG2482|consen  281 VCLFCTNFYENPVFLFEHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAECDLSFWKEPGLLIHMVE  356 (423)
T ss_pred             EEEeeccchhhHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHHHHHhhccccccccccccCcchhhhhccc
Confidence            699999999999999999987652                           1224478899999999999999864

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=94.55  E-value=0.053  Score=37.29  Aligned_cols=83  Identities=25%  Similarity=0.472  Sum_probs=45.5

Q ss_pred             Ccccccc--cccccCChHHHHHHHHHhcCCCCcCCCCch---hhhcChH------HHHHHHhhhcCCCCccCCCCCCCCC
Q psy8937          18 DARYCKI--CGKHYSNSSNLKQHIRLIHLPGILFCPLCQ---KCFKNKL------YLRRHVGTYTHTPSYRSVPGASKPL   86 (147)
Q Consensus        18 ~~~~C~~--C~~~f~~~~~l~~h~~~~~~~~~~~C~~C~---~~f~~~~------~l~~H~~~~~~~~~~~~~~~~~~~~   86 (147)
                      ..|.|+.  |..+....-.|..|...-|..  +-|.+|-   +.|..+.      .|..|...  +.         .  .
T Consensus       150 L~F~CP~skc~~~C~~~k~lk~H~K~~H~~--~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~--G~---------~--e  214 (493)
T COG5236         150 LSFKCPKSKCHRRCGSLKELKKHYKAQHGF--VLCSECIGNKKDFWNEIRLFRSSTLRDHKNG--GL---------E--E  214 (493)
T ss_pred             HHhcCCchhhhhhhhhHHHHHHHHHhhcCc--EEhHhhhcCcccCccceeeeecccccccccC--Cc---------c--c
Confidence            3566765  666666677788887765543  3344432   3343322      23333210  00         0  0


Q ss_pred             CCcCCc-ccccccccCCChHHHHHHHHHHh
Q psy8937          87 HSLDAR-YCKICGKHYSNSSNLKQHIRLIH  115 (147)
Q Consensus        87 ~~~~~~-~C~~c~~~~~~~~~l~~H~~~~~  115 (147)
                      .+.+-+ .|..|...|.+...|..|.+..+
T Consensus       215 ~GFKGHP~C~FC~~~FYdDDEL~~HcR~~H  244 (493)
T COG5236         215 EGFKGHPLCIFCKIYFYDDDELRRHCRLRH  244 (493)
T ss_pred             cCcCCCchhhhccceecChHHHHHHHHhhh
Confidence            011111 48888888888888888887654

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=94.49  E-value=0.025  Score=32.48  Aligned_cols=30  Identities=27%  Similarity=0.728  Sum_probs=24.4

Q ss_pred             cccccccccCCChHHHHHHHHHHhCCCcccCCCchhccCCh
Q psy8937          92 RYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNK  132 (147)
Q Consensus        92 ~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~  132 (147)
                      ..|+.||..|....           ..|..|+.||..|...
T Consensus        10 R~Cp~CG~kFYDLn-----------k~PivCP~CG~~~~~~   39 (108)
T PF09538_consen   10 RTCPSCGAKFYDLN-----------KDPIVCPKCGTEFPPE   39 (108)
T ss_pred             ccCCCCcchhccCC-----------CCCccCCCCCCccCcc
Confidence            36999999998763           3688999999988765

The function of members of this family is unknown.

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=94.19  E-value=0.024  Score=25.08  Aligned_cols=24  Identities=29%  Similarity=0.865  Sum_probs=17.4

Q ss_pred             cccccccccCCChHHHHHHHHHHhCCCcccCCCchh
Q psy8937          92 RYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQK  127 (147)
Q Consensus        92 ~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C~~  127 (147)
                      |.|..||..+....            .++.|++|+.
T Consensus         2 ~~C~~CGy~y~~~~------------~~~~CP~Cg~   25 (33)
T cd00350           2 YVCPVCGYIYDGEE------------APWVCPVCGA   25 (33)
T ss_pred             EECCCCCCEECCCc------------CCCcCcCCCC
Confidence            56888887765443            5788999985

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=93.83  E-value=0.044  Score=25.93  Aligned_cols=27  Identities=30%  Similarity=0.440  Sum_probs=14.2

Q ss_pred             CCcccCCCchhccCCh----HHHHhHHHhhh
Q psy8937         117 PGILFCPLCQKCFKNK----LYLRRHVISFH  143 (147)
Q Consensus       117 ~~~~~C~~C~~~f~~~----~~l~~H~~~~h  143 (147)
                      .....|..|++.+...    +.|.+|++..|
T Consensus        14 ~~~a~C~~C~~~~~~~~~~ts~l~~HL~~~h   44 (45)
T PF02892_consen   14 KKKAKCKYCGKVIKYSSGGTSNLKRHLKKKH   44 (45)
T ss_dssp             SS-EEETTTTEE-----SSTHHHHHHHHHTT
T ss_pred             cCeEEeCCCCeEEeeCCCcHHHHHHhhhhhC
Confidence            3456677777776664    57777775443

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=93.72  E-value=0.036  Score=27.35  Aligned_cols=30  Identities=17%  Similarity=0.361  Sum_probs=26.1

Q ss_pred             CCcCCcccccccccCCChHHHHHHHHHHhC
Q psy8937          87 HSLDARYCKICGKHYSNSSNLKQHIRLIHL  116 (147)
Q Consensus        87 ~~~~~~~C~~c~~~~~~~~~l~~H~~~~~~  116 (147)
                      ++|..+.|+.|+..|........|.+..++
T Consensus        13 DGE~~lrCPRC~~~FR~~K~Y~RHVNKaH~   42 (65)
T COG4049          13 DGEEFLRCPRCGMVFRRRKDYIRHVNKAHG   42 (65)
T ss_pred             CCceeeeCCchhHHHHHhHHHHHHhhHHhh
Confidence            477788999999999999999999987665

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=93.57  E-value=0.011  Score=41.89  Aligned_cols=56  Identities=30%  Similarity=0.440  Sum_probs=51.2

Q ss_pred             CCcccccccccCCChHHHHHHHH--HHhCC--CcccCC--CchhccCChHHHHhHHHhhhcc
Q psy8937          90 DARYCKICGKHYSNSSNLKQHIR--LIHLP--GILFCP--LCQKCFKNKLYLRRHVISFHEN  145 (147)
Q Consensus        90 ~~~~C~~c~~~~~~~~~l~~H~~--~~~~~--~~~~C~--~C~~~f~~~~~l~~H~~~~h~~  145 (147)
                      .++.|..|...|.....|..|.+  .|.++  +++.|+  .|++.|.+...+..|..+|.+.
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  349 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSI  349 (467)
T ss_pred             cCCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCC
Confidence            46789999999999999999999  89999  999999  8999999999999999888664

>TIGR00373 conserved hypothetical protein TIGR00373

Probab=93.51  E-value=0.039  Score=33.99  Aligned_cols=35  Identities=11%  Similarity=0.211  Sum_probs=28.7

Q ss_pred             CccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCchhhhc
Q psy8937          15 HSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFK   58 (147)
Q Consensus        15 ~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C~~~f~   58 (147)
                      .+..-|.|+.|+..|+...++.         ..|.||.||....
T Consensus       105 ~~~~~Y~Cp~c~~r~tf~eA~~---------~~F~Cp~Cg~~L~  139 (158)
T TIGR00373       105 TNNMFFICPNMCVRFTFNEAME---------LNFTCPRCGAMLD  139 (158)
T ss_pred             cCCCeEECCCCCcEeeHHHHHH---------cCCcCCCCCCEee
Confidence            3567799999999999988875         2699999998754

This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.

>KOG2807|consensus

Probab=93.10  E-value=0.26  Score=33.76  Aligned_cols=37  Identities=19%  Similarity=0.384  Sum_probs=26.6

Q ss_pred             cCcccccccccccCChHHHHHHHHHhcCCCCcCCCCchhhhcChHHHHHHH
Q psy8937          17 LDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHV   67 (147)
Q Consensus        17 ~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~   67 (147)
                      ...|.|++|...              ....|..|+.|+-.......|.+-.
T Consensus       274 ~~Gy~CP~Ckak--------------vCsLP~eCpiC~ltLVss~hLARSy  310 (378)
T KOG2807|consen  274 GGGYFCPQCKAK--------------VCSLPIECPICSLTLVSSPHLARSY  310 (378)
T ss_pred             cCceeCCcccCe--------------eecCCccCCccceeEecchHHHHHH
Confidence            456777777653              3345788999998888888787654

>KOG2893|consensus

Probab=93.05  E-value=0.037  Score=36.04  Aligned_cols=47  Identities=21%  Similarity=0.390  Sum_probs=37.2

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCchhccCChHHHHhHH
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHV  139 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~  139 (147)
                      ..|+| |=.|++.|.....|..|++    .|-|+|.+|-|.+-+.-.|..|-
T Consensus         8 ~~kpw-cwycnrefddekiliqhqk----akhfkchichkkl~sgpglsihc   54 (341)
T KOG2893|consen    8 VDKPW-CWYCNREFDDEKILIQHQK----AKHFKCHICHKKLFSGPGLSIHC   54 (341)
T ss_pred             cCCce-eeecccccchhhhhhhhhh----hccceeeeehhhhccCCCceeeh
Confidence            34555 7789999999999988876    46799999998777776777773

>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins

Probab=92.91  E-value=0.044  Score=32.61  Aligned_cols=24  Identities=38%  Similarity=0.715  Sum_probs=15.3

Q ss_pred             cccCCCchhccCChHHHHhHHHhhhcc
Q psy8937         119 ILFCPLCQKCFKNKLYLRRHVISFHEN  145 (147)
Q Consensus       119 ~~~C~~C~~~f~~~~~l~~H~~~~h~~  145 (147)
                      -..|-+||+.|..   |.+|++.|||-
T Consensus        72 ~i~clecGk~~k~---LkrHL~~~~gl   95 (132)
T PF05443_consen   72 YIICLECGKKFKT---LKRHLRTHHGL   95 (132)
T ss_dssp             -EE-TBT--EESB---HHHHHHHTT-S
T ss_pred             eeEEccCCcccch---HHHHHHHccCC
Confidence            3669999998885   48999999874

The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.

>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []

Probab=92.89  E-value=0.044  Score=35.42  Aligned_cols=27  Identities=37%  Similarity=0.801  Sum_probs=17.7

Q ss_pred             cccCCCchhccCChHHHHhHHHhhhcc
Q psy8937         119 ILFCPLCQKCFKNKLYLRRHVISFHEN  145 (147)
Q Consensus       119 ~~~C~~C~~~f~~~~~l~~H~~~~h~~  145 (147)
                      .|.|+.|+|.|.-......|+...|++
T Consensus        77 K~~C~lc~KlFkg~eFV~KHI~nKH~e  103 (214)
T PF04959_consen   77 KWRCPLCGKLFKGPEFVRKHIFNKHPE  103 (214)
T ss_dssp             EEEE-SSS-EESSHHHHHHHHHHH-HH
T ss_pred             EECCCCCCcccCChHHHHHHHhhcCHH
Confidence            477777777777777777777777765

Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=92.46  E-value=0.09  Score=36.22  Aligned_cols=80  Identities=26%  Similarity=0.350  Sum_probs=53.8

Q ss_pred             cCCCC--chhhhcChHHHHHHHhhhcCCCCccCCCCCCCCCCCcCCccccccc---c------cCCChHHHHHHHHHHhC
Q psy8937          48 LFCPL--CQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDARYCKICG---K------HYSNSSNLKQHIRLIHL  116 (147)
Q Consensus        48 ~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~---~------~~~~~~~l~~H~~~~~~  116 (147)
                      |.||.  |...+.....|..|....++.                  +.|..|-   +      ..-.+..|+.|...-..
T Consensus       152 F~CP~skc~~~C~~~k~lk~H~K~~H~~------------------~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~  213 (493)
T COG5236         152 FKCPKSKCHRRCGSLKELKKHYKAQHGF------------------VLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLE  213 (493)
T ss_pred             hcCCchhhhhhhhhHHHHHHHHHhhcCc------------------EEhHhhhcCcccCccceeeeecccccccccCCcc
Confidence            66864  666666666788888655532                  2355443   2      23346677777765444


Q ss_pred             CCccc----CCCchhccCChHHHHhHHHhhhcc
Q psy8937         117 PGILF----CPLCQKCFKNKLYLRRHVISFHEN  145 (147)
Q Consensus       117 ~~~~~----C~~C~~~f~~~~~l~~H~~~~h~~  145 (147)
                      +.-|+    |..|.+.|.....|.+|+|..|..
T Consensus       214 e~GFKGHP~C~FC~~~FYdDDEL~~HcR~~HE~  246 (493)
T COG5236         214 EEGFKGHPLCIFCKIYFYDDDELRRHCRLRHEA  246 (493)
T ss_pred             ccCcCCCchhhhccceecChHHHHHHHHhhhhh
Confidence            43343    899999999999999999988763

>PRK06266 transcription initiation factor E subunit alpha; Validated

Probab=92.28  E-value=0.075  Score=33.43  Aligned_cols=36  Identities=14%  Similarity=0.392  Sum_probs=28.6

Q ss_pred             CccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCchhhhcC
Q psy8937          15 HSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKN   59 (147)
Q Consensus        15 ~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~   59 (147)
                      .+..-|.|+.|+..|+...++.         ..|.|+.||.....
T Consensus       113 ~~~~~Y~Cp~C~~rytf~eA~~---------~~F~Cp~Cg~~L~~  148 (178)
T PRK06266        113 ENNMFFFCPNCHIRFTFDEAME---------YGFRCPQCGEMLEE  148 (178)
T ss_pred             cCCCEEECCCCCcEEeHHHHhh---------cCCcCCCCCCCCee
Confidence            3456799999999998887763         36999999987643

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=92.22  E-value=0.3  Score=28.01  Aligned_cols=54  Identities=22%  Similarity=0.338  Sum_probs=39.8

Q ss_pred             cCcccccccccccCChHHHHHHHHHhcCCC------------------------------------------CcCC----
Q psy8937          17 LDARYCKICGKHYSNSSNLKQHIRLIHLPG------------------------------------------ILFC----   50 (147)
Q Consensus        17 ~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~------------------------------------------~~~C----   50 (147)
                      -+..+|..|+.+... +.+..|++..|...                                          .|.|    
T Consensus         9 ~~vlIC~~C~~av~~-~~v~~HL~~~H~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~p~~~~~Pi~gLp~~~G~~C~~~~   87 (109)
T PF12013_consen    9 YRVLICRQCQYAVQP-SEVESHLRKRHHILKSQERQRIVEAIRQWPDLLPDPDDLQIPPDPSPPIPGLPVYDGYRCQCDP   87 (109)
T ss_pred             CCEEEeCCCCcccCc-hHHHHHHHHhcccccHHHHHHHHHHHHhhhhcccCccccCCCCCCCCcCCCCCCCCCeeeecCC
Confidence            456789999987766 77888888544321                                          1678    


Q ss_pred             CCchhhhcChHHHHHHHhhhc
Q psy8937          51 PLCQKCFKNKLYLRRHVGTYT   71 (147)
Q Consensus        51 ~~C~~~f~~~~~l~~H~~~~~   71 (147)
                      +.|+..+.+...|..|.+..+
T Consensus        88 ~~C~y~~~~~~~m~~H~~~~H  108 (109)
T PF12013_consen   88 PHCGYITRSKKTMRKHWRKEH  108 (109)
T ss_pred             CCCCcEeccHHHHHHHHHHhc
Confidence            889888888888998886544

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>PHA00626 hypothetical protein

Probab=91.96  E-value=0.046  Score=27.04  Aligned_cols=36  Identities=14%  Similarity=0.201  Sum_probs=21.4

Q ss_pred             ccccccccCCChHHHHHHHHHHhCCCcccCCCchhccCChH
Q psy8937          93 YCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKL  133 (147)
Q Consensus        93 ~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~  133 (147)
                      .|+.|+..-........     .....|+|+.||+.|+...
T Consensus         2 ~CP~CGS~~Ivrcg~cr-----~~snrYkCkdCGY~ft~~~   37 (59)
T PHA00626          2 SCPKCGSGNIAKEKTMR-----GWSDDYVCCDCGYNDSKDA   37 (59)
T ss_pred             CCCCCCCceeeeeceec-----ccCcceEcCCCCCeechhh
Confidence            37777764322322111     1246799999999988653

>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger

Probab=91.35  E-value=0.21  Score=20.75  Aligned_cols=20  Identities=20%  Similarity=0.551  Sum_probs=14.2

Q ss_pred             ccCCCchhccCChHHHHhHHH
Q psy8937         120 LFCPLCQKCFKNKLYLRRHVI  140 (147)
Q Consensus       120 ~~C~~C~~~f~~~~~l~~H~~  140 (147)
                      ..||+|++.+ ....+..|+-
T Consensus         2 v~CPiC~~~v-~~~~in~HLD   21 (26)
T smart00734        2 VQCPVCFREV-PENLINSHLD   21 (26)
T ss_pred             CcCCCCcCcc-cHHHHHHHHH
Confidence            3588888887 5567777764

Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.

>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase

Probab=90.90  E-value=0.12  Score=23.05  Aligned_cols=25  Identities=24%  Similarity=0.628  Sum_probs=16.9

Q ss_pred             cccccccccccCChHHHHHHHHHhcCCCCcCCCCchh
Q psy8937          19 ARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQK   55 (147)
Q Consensus        19 ~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C~~   55 (147)
                      .|+|..||..+...            ..|..|+.|+.
T Consensus         2 ~~~C~~CG~i~~g~------------~~p~~CP~Cg~   26 (34)
T cd00729           2 VWVCPVCGYIHEGE------------EAPEKCPICGA   26 (34)
T ss_pred             eEECCCCCCEeECC------------cCCCcCcCCCC
Confidence            47888888765432            14568888874

In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>PRK00464 nrdR transcriptional regulator NrdR; Validated

Probab=90.67  E-value=0.023  Score=34.80  Aligned_cols=44  Identities=16%  Similarity=0.202  Sum_probs=23.2

Q ss_pred             ccccccccccCChHHHHHHHHHhcCCCCcCCCCchhhhcChHHH
Q psy8937          20 RYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYL   63 (147)
Q Consensus        20 ~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l   63 (147)
                      +.|+.||..+.....-..--......+.++|+.||+.|.....+
T Consensus         1 m~cp~c~~~~~~~~~s~~~~~~~~~~~~~~c~~c~~~f~~~e~~   44 (154)
T PRK00464          1 MRCPFCGHPDTRVIDSRPAEDGNAIRRRRECLACGKRFTTFERV   44 (154)
T ss_pred             CcCCCCCCCCCEeEeccccCCCCceeeeeeccccCCcceEeEec
Confidence            46889987653322211100000112347899999998765443

>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]

Probab=90.57  E-value=0.2  Score=25.16  Aligned_cols=33  Identities=21%  Similarity=0.305  Sum_probs=21.8

Q ss_pred             CCcccccccccCCChHHHHHHHHHHhCCCcccCCCchh
Q psy8937          90 DARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQK  127 (147)
Q Consensus        90 ~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C~~  127 (147)
                      ..|.|+.||........     +--....+|.|+.||.
T Consensus        26 v~F~CPnCGe~~I~Rc~-----~CRk~g~~Y~Cp~CGF   58 (61)
T COG2888          26 VKFPCPNCGEVEIYRCA-----KCRKLGNPYRCPKCGF   58 (61)
T ss_pred             eEeeCCCCCceeeehhh-----hHHHcCCceECCCcCc
Confidence            45679999966554433     1223357899999984

>KOG4173|consensus

Probab=90.26  E-value=0.23  Score=31.71  Aligned_cols=52  Identities=21%  Similarity=0.619  Sum_probs=42.3

Q ss_pred             CCccccc--ccccCCChHHHHHHHHHHhCCCcccCCCchhccCChHHHHhHHHhhhc
Q psy8937          90 DARYCKI--CGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVISFHE  144 (147)
Q Consensus        90 ~~~~C~~--c~~~~~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  144 (147)
                      ..+.|+.  |-..|.+......|...-++.   .|++|.+.|.+...|..|+..-|.
T Consensus        78 ~~~~cqvagc~~~~d~lD~~E~hY~~~h~~---sCs~C~r~~Pt~hLLd~HI~E~HD  131 (253)
T KOG4173|consen   78 PAFACQVAGCCQVFDALDDYEHHYHTLHGN---SCSFCKRAFPTGHLLDAHILEWHD  131 (253)
T ss_pred             ccccccccchHHHHhhhhhHHHhhhhcccc---hhHHHHHhCCchhhhhHHHHHHHH
Confidence            4566765  778888888888888776664   699999999999999999987664

>KOG2186|consensus

Probab=90.22  E-value=0.13  Score=33.92  Aligned_cols=49  Identities=22%  Similarity=0.530  Sum_probs=32.6

Q ss_pred             cCCCCchhhhcChHHHHHHHhhhcCCCCccCCCCCCCCCCCcCCcccccccccCCChHHHHHHHHHHh
Q psy8937          48 LFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDARYCKICGKHYSNSSNLKQHIRLIH  115 (147)
Q Consensus        48 ~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~~~~~~~l~~H~~~~~  115 (147)
                      |.|.+||.+..-.. +.+|+...++                 ..|.|..|+..|.. ..+..|...-.
T Consensus         4 FtCnvCgEsvKKp~-vekH~srCrn-----------------~~fSCIDC~k~F~~-~sYknH~kCIT   52 (276)
T KOG2186|consen    4 FTCNVCGESVKKPQ-VEKHMSRCRN-----------------AYFSCIDCGKTFER-VSYKNHTKCIT   52 (276)
T ss_pred             Eehhhhhhhccccc-hHHHHHhccC-----------------CeeEEeeccccccc-chhhhhhhhcc
Confidence            67888887776554 6678765553                 23568888888877 55666665433

>smart00614 ZnF_BED BED zinc finger

Probab=90.17  E-value=0.24  Score=24.09  Aligned_cols=22  Identities=32%  Similarity=0.529  Sum_probs=13.2

Q ss_pred             ccCCCchhccCCh-----HHHHhHHHh
Q psy8937         120 LFCPLCQKCFKNK-----LYLRRHVIS  141 (147)
Q Consensus       120 ~~C~~C~~~f~~~-----~~l~~H~~~  141 (147)
                      ..|..|++.++..     +.|.+|+..
T Consensus        19 a~C~~C~~~l~~~~~~gTs~L~rHl~~   45 (50)
T smart00614       19 AKCKYCGKKLSRSSKGGTSNLRRHLRR   45 (50)
T ss_pred             EEecCCCCEeeeCCCCCcHHHHHHHHh
Confidence            4466666666544     467777763

DNA-binding domain in chromatin-boundary-element-binding proteins and transposases

>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family

Probab=90.17  E-value=0.051  Score=26.64  Aligned_cols=30  Identities=20%  Similarity=0.558  Sum_probs=20.9

Q ss_pred             cccccccccccCChHHHHHHHHHhcCCCCcCCCCchh
Q psy8937          19 ARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQK   55 (147)
Q Consensus        19 ~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C~~   55 (147)
                      .|.|..||..|.....+.       ......|+.||.
T Consensus         5 ey~C~~Cg~~fe~~~~~~-------~~~~~~CP~Cg~   34 (52)
T TIGR02605         5 EYRCTACGHRFEVLQKMS-------DDPLATCPECGG   34 (52)
T ss_pred             EEEeCCCCCEeEEEEecC-------CCCCCCCCCCCC
Confidence            478999999887653321       134567999986

This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.

>COG1592 Rubrerythrin [Energy production and conversion]

Probab=90.01  E-value=0.2  Score=31.11  Aligned_cols=24  Identities=25%  Similarity=0.674  Sum_probs=19.2

Q ss_pred             CcccccccccccCChHHHHHHHHHhcCCCCcCCCCch
Q psy8937          18 DARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQ   54 (147)
Q Consensus        18 ~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C~   54 (147)
                      +.|+|++||..             +-+..|-+||+||
T Consensus       133 ~~~vC~vCGy~-------------~~ge~P~~CPiCg  156 (166)
T COG1592         133 KVWVCPVCGYT-------------HEGEAPEVCPICG  156 (166)
T ss_pred             CEEEcCCCCCc-------------ccCCCCCcCCCCC
Confidence            47999999875             3456788999998

>PF13717 zinc_ribbon_4: zinc-ribbon domain

Probab=89.80  E-value=0.15  Score=23.00  Aligned_cols=32  Identities=19%  Similarity=0.374  Sum_probs=23.3

Q ss_pred             ccccccccCCChHHHHHHHHHHhCCCcccCCCchhcc
Q psy8937          93 YCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCF  129 (147)
Q Consensus        93 ~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C~~~f  129 (147)
                      .|+.|+..|.......     -......+|+.|+..|
T Consensus         4 ~Cp~C~~~y~i~d~~i-----p~~g~~v~C~~C~~~f   35 (36)
T PF13717_consen    4 TCPNCQAKYEIDDEKI-----PPKGRKVRCSKCGHVF   35 (36)
T ss_pred             ECCCCCCEEeCCHHHC-----CCCCcEEECCCCCCEe
Confidence            5899999988877632     2334568899999876

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=89.74  E-value=0.13  Score=23.36  Aligned_cols=34  Identities=15%  Similarity=0.303  Sum_probs=23.2

Q ss_pred             cccccccccCCChHHHHHHHHHHhCCCcccCCCchhccC
Q psy8937          92 RYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFK  130 (147)
Q Consensus        92 ~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C~~~f~  130 (147)
                      +.|+.|+..|........     .......|+.|+..|.
T Consensus         3 ~~CP~C~~~~~v~~~~~~-----~~~~~v~C~~C~~~~~   36 (38)
T TIGR02098         3 IQCPNCKTSFRVVDSQLG-----ANGGKVRCGKCGHVWY   36 (38)
T ss_pred             EECCCCCCEEEeCHHHcC-----CCCCEEECCCCCCEEE
Confidence            359999998887765321     2223588999998774

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=89.65  E-value=0.17  Score=22.94  Aligned_cols=33  Identities=21%  Similarity=0.496  Sum_probs=23.5

Q ss_pred             ccccccccCCChHHHHHHHHHHhCCCcccCCCchhccC
Q psy8937          93 YCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFK  130 (147)
Q Consensus        93 ~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C~~~f~  130 (147)
                      .|+.|+..|....+-     ...+....+|+.|+-.|.
T Consensus         4 ~CP~C~~~f~v~~~~-----l~~~~~~vrC~~C~~~f~   36 (37)
T PF13719_consen    4 TCPNCQTRFRVPDDK-----LPAGGRKVRCPKCGHVFR   36 (37)
T ss_pred             ECCCCCceEEcCHHH-----cccCCcEEECCCCCcEee
Confidence            589999988887652     123345688999997774

>TIGR00373 conserved hypothetical protein TIGR00373

Probab=89.65  E-value=0.16  Score=31.36  Aligned_cols=35  Identities=11%  Similarity=0.201  Sum_probs=27.7

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCchhccCC
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKN  131 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~  131 (147)
                      +...|.|+.|+..|+...++.         ..|.|+.||.....
T Consensus       106 ~~~~Y~Cp~c~~r~tf~eA~~---------~~F~Cp~Cg~~L~~  140 (158)
T TIGR00373       106 NNMFFICPNMCVRFTFNEAME---------LNFTCPRCGAMLDY  140 (158)
T ss_pred             CCCeEECCCCCcEeeHHHHHH---------cCCcCCCCCCEeee
Confidence            446688999999999988874         26999999976543

This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.

>smart00834 CxxC_CXXC_SSSS Putative regulatory protein

Probab=89.60  E-value=0.054  Score=25.02  Aligned_cols=31  Identities=19%  Similarity=0.473  Sum_probs=21.4

Q ss_pred             cccccccccccCChHHHHHHHHHhcCCCCcCCCCchhh
Q psy8937          19 ARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKC   56 (147)
Q Consensus        19 ~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C~~~   56 (147)
                      .|.|..||..|.....+       .......|+.||..
T Consensus         5 ~y~C~~Cg~~fe~~~~~-------~~~~~~~CP~Cg~~   35 (41)
T smart00834        5 EYRCEDCGHTFEVLQKI-------SDDPLATCPECGGD   35 (41)
T ss_pred             EEEcCCCCCEEEEEEec-------CCCCCCCCCCCCCc
Confidence            47899999988654432       11456679999863

CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>smart00659 RPOLCX RNA polymerase subunit CX

Probab=89.54  E-value=0.16  Score=24.04  Aligned_cols=29  Identities=17%  Similarity=0.388  Sum_probs=21.0

Q ss_pred             cccccccccccCChHHHHHHHHHhcCCCCcCCCCchhhhc
Q psy8937          19 ARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFK   58 (147)
Q Consensus        19 ~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C~~~f~   58 (147)
                      .|.|..||..|...           ...+..|+.||....
T Consensus         2 ~Y~C~~Cg~~~~~~-----------~~~~irC~~CG~rIl   30 (44)
T smart00659        2 IYICGECGRENEIK-----------SKDVVRCRECGYRIL   30 (44)
T ss_pred             EEECCCCCCEeecC-----------CCCceECCCCCceEE
Confidence            48899999987643           345678999986544

present in RNA polymerase I, II and III

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=89.40  E-value=0.051  Score=35.26  Aligned_cols=13  Identities=23%  Similarity=0.445  Sum_probs=9.3

Q ss_pred             cccccccccCCCh
Q psy8937          92 RYCKICGKHYSNS  104 (147)
Q Consensus        92 ~~C~~c~~~~~~~  104 (147)
                      +.|+.||.++...
T Consensus        49 ~vCP~CgyA~~~~   61 (214)
T PF09986_consen   49 WVCPHCGYAAFEE   61 (214)
T ss_pred             EECCCCCCccccc
Confidence            4599999876543

>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues

Probab=89.04  E-value=0.13  Score=33.97  Aligned_cols=84  Identities=19%  Similarity=0.233  Sum_probs=44.8

Q ss_pred             cCCCCcCCCCchhhhcChHHHHHHHhhhcCCCCccCCCCCCCCCCCcCCcccccccccCCChHHH-------HHHHHHH-
Q psy8937          43 HLPGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDARYCKICGKHYSNSSNL-------KQHIRLI-  114 (147)
Q Consensus        43 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~~~~~~~l-------~~H~~~~-  114 (147)
                      |+++.|+|..|..- .-+..--.|+.+....              +...|+|..|++.-.. +-|       ..|++.- 
T Consensus       138 hGGrif~CsfC~~f-lCEDDQFEHQAsCQvL--------------e~E~~KC~SCNrlGq~-sCLRCK~cfCddHvrrKg  201 (314)
T PF06524_consen  138 HGGRIFKCSFCDNF-LCEDDQFEHQASCQVL--------------ESETFKCQSCNRLGQY-SCLRCKICFCDDHVRRKG  201 (314)
T ss_pred             CCCeEEEeecCCCe-eeccchhhhhhhhhhh--------------hcccccccccccccch-hhhheeeeehhhhhhhcc
Confidence            44566777777643 3333333455433221              2334566666653221 111       2344431 


Q ss_pred             ---hCCCcccCCCchhccCChHHHHhHHHhh
Q psy8937         115 ---HLPGILFCPLCQKCFKNKLYLRRHVISF  142 (147)
Q Consensus       115 ---~~~~~~~C~~C~~~f~~~~~l~~H~~~~  142 (147)
                         ...+++.|+.|+.....-..|..-.|+|
T Consensus       202 ~ky~k~k~~PCPKCg~et~eTkdLSmStR~h  232 (314)
T PF06524_consen  202 FKYEKGKPIPCPKCGYETQETKDLSMSTRSH  232 (314)
T ss_pred             cccccCCCCCCCCCCCcccccccceeeeecc
Confidence               2347899999998887777766555544

The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus

>smart00531 TFIIE Transcription initiation factor IIE

Probab=88.90  E-value=0.19  Score=30.61  Aligned_cols=40  Identities=18%  Similarity=0.355  Sum_probs=27.6

Q ss_pred             CccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCchhhhc
Q psy8937          15 HSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFK   58 (147)
Q Consensus        15 ~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C~~~f~   58 (147)
                      .+...|.|+.|+..|.....+..-   . ....|.|+.||....
T Consensus        95 ~~~~~Y~Cp~C~~~y~~~ea~~~~---d-~~~~f~Cp~Cg~~l~  134 (147)
T smart00531       95 TNNAYYKCPNCQSKYTFLEANQLL---D-MDGTFTCPRCGEELE  134 (147)
T ss_pred             cCCcEEECcCCCCEeeHHHHHHhc---C-CCCcEECCCCCCEEE
Confidence            345689999999999865544321   1 234499999998764

>COG4957 Predicted transcriptional regulator [Transcription]

Probab=88.79  E-value=0.19  Score=29.76  Aligned_cols=23  Identities=30%  Similarity=0.417  Sum_probs=18.1

Q ss_pred             ccCCCchhccCChHHHHhHHHhhhcc
Q psy8937         120 LFCPLCQKCFKNKLYLRRHVISFHEN  145 (147)
Q Consensus       120 ~~C~~C~~~f~~~~~l~~H~~~~h~~  145 (147)
                      ..|-++|+.|.   +|.+|+.+|+|=
T Consensus        77 IicLEDGkkfK---SLKRHL~t~~gm   99 (148)
T COG4957          77 IICLEDGKKFK---SLKRHLTTHYGL   99 (148)
T ss_pred             EEEeccCcchH---HHHHHHhcccCC
Confidence            55888888887   678888888763

>PRK06266 transcription initiation factor E subunit alpha; Validated

Probab=88.52  E-value=0.21  Score=31.43  Aligned_cols=35  Identities=14%  Similarity=0.399  Sum_probs=27.3

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCchhccCC
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKN  131 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~  131 (147)
                      ....|.|+.|+..|+...++.         ..|.|+.||-....
T Consensus       114 ~~~~Y~Cp~C~~rytf~eA~~---------~~F~Cp~Cg~~L~~  148 (178)
T PRK06266        114 NNMFFFCPNCHIRFTFDEAME---------YGFRCPQCGEMLEE  148 (178)
T ss_pred             CCCEEECCCCCcEEeHHHHhh---------cCCcCCCCCCCCee
Confidence            345688999999999887753         36999999976654

>KOG2482|consensus

Probab=88.12  E-value=1.5  Score=30.43  Aligned_cols=50  Identities=28%  Similarity=0.499  Sum_probs=37.6

Q ss_pred             ccccccccC-CChHHHHHHHHHHhCC----------------------CcccCCCchhccCChHHHHhHHHhh
Q psy8937          93 YCKICGKHY-SNSSNLKQHIRLIHLP----------------------GILFCPLCQKCFKNKLYLRRHVISF  142 (147)
Q Consensus        93 ~C~~c~~~~-~~~~~l~~H~~~~~~~----------------------~~~~C~~C~~~f~~~~~l~~H~~~~  142 (147)
                      .|-.|+..+ ..++.+..|+-..++-                      ..+.|-.|.+.|..+..|+.|||..
T Consensus       146 qClFCn~e~lgnRs~~l~Hlf~~H~lniGlpDniVyvnelLehLkekL~r~~CLyCekifrdkntLkeHMrkK  218 (423)
T KOG2482|consen  146 QCLFCNNEGLGNRSEILEHLFHVHGLNIGLPDNIVYVNELLEHLKEKLERLRCLYCEKIFRDKNTLKEHMRKK  218 (423)
T ss_pred             EEEEecchhcccHHHHHHHHHHHhhhccCCCcceeeHHHHHHHHHHHHhhheeeeeccccCCcHHHHHHHHhc
Confidence            588888544 4677777777544321                      2377999999999999999999864

>KOG2893|consensus

Probab=88.01  E-value=0.11  Score=33.84  Aligned_cols=46  Identities=26%  Similarity=0.496  Sum_probs=35.1

Q ss_pred             CCCchhhhcChHHHHHHHhhhcCCCCccCCCCCCCCCCCcCCcccccccccCCChHHHHHHHHHHh
Q psy8937          50 CPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDARYCKICGKHYSNSSNLKQHIRLIH  115 (147)
Q Consensus        50 C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~~~~~~~l~~H~~~~~  115 (147)
                      |=.|.+.|..+.-|..|+.                    .|-|+|.+|.+.+-+...|..|--..+
T Consensus        13 cwycnrefddekiliqhqk--------------------akhfkchichkkl~sgpglsihcmqvh   58 (341)
T KOG2893|consen   13 CWYCNREFDDEKILIQHQK--------------------AKHFKCHICHKKLFSGPGLSIHCMQVH   58 (341)
T ss_pred             eeecccccchhhhhhhhhh--------------------hccceeeeehhhhccCCCceeehhhhh
Confidence            6678999999999999983                    355789999988877766666654433

>KOG4727|consensus

Probab=87.65  E-value=0.36  Score=29.86  Aligned_cols=34  Identities=29%  Similarity=0.483  Sum_probs=27.3

Q ss_pred             CCCCCCccCccCcccccccccccCChHHHHHHHH
Q psy8937           7 VPGGSKPLHSLDARYCKICGKHYSNSSNLKQHIR   40 (147)
Q Consensus         7 ~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~   40 (147)
                      |.....+.+....|.|++|+-+|....++..|++
T Consensus        63 vitk~tp~sq~~GyyCdVCdcvvKDSinflDHiN   96 (193)
T KOG4727|consen   63 VITKSTPRSQKGGYYCDVCDCVVKDSINFLDHIN   96 (193)
T ss_pred             EeccCCcccccCceeeeecceeehhhHHHHHHhc
Confidence            3444555566789999999999999999988876

>KOG2186|consensus

Probab=87.63  E-value=0.3  Score=32.22  Aligned_cols=47  Identities=19%  Similarity=0.480  Sum_probs=36.6

Q ss_pred             CcccccccccCCChHHHHHHHHHHhCCCcccCCCchhccCChHHHHhHHH
Q psy8937          91 ARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVI  140 (147)
Q Consensus        91 ~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~  140 (147)
                      .|.|..||....- ..+..|+..-++ .-|.|-.|++.|.+ .++..|..
T Consensus         3 ~FtCnvCgEsvKK-p~vekH~srCrn-~~fSCIDC~k~F~~-~sYknH~k   49 (276)
T KOG2186|consen    3 FFTCNVCGESVKK-PQVEKHMSRCRN-AYFSCIDCGKTFER-VSYKNHTK   49 (276)
T ss_pred             EEehhhhhhhccc-cchHHHHHhccC-CeeEEeeccccccc-chhhhhhh
Confidence            3679999988654 456679888777 56999999999998 56677754

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional

Probab=87.29  E-value=0.073  Score=25.42  Aligned_cols=31  Identities=19%  Similarity=0.366  Sum_probs=21.1

Q ss_pred             CcccccccccccCChHHHHHHHHHhcCCCCcCCCCchhhhc
Q psy8937          18 DARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFK   58 (147)
Q Consensus        18 ~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C~~~f~   58 (147)
                      ..|.|+.||..|......          ....|+.||..+.
T Consensus         2 ~~y~C~~CG~~~~~~~~~----------~~~~Cp~CG~~~~   32 (46)
T PRK00398          2 AEYKCARCGREVELDEYG----------TGVRCPYCGYRIL   32 (46)
T ss_pred             CEEECCCCCCEEEECCCC----------CceECCCCCCeEE
Confidence            368899999977553221          1578999987654

>KOG4167|consensus

Probab=87.19  E-value=0.15  Score=38.64  Aligned_cols=25  Identities=24%  Similarity=0.362  Sum_probs=23.2

Q ss_pred             cccCCCchhccCChHHHHhHHHhhh
Q psy8937         119 ILFCPLCQKCFKNKLYLRRHVISFH  143 (147)
Q Consensus       119 ~~~C~~C~~~f~~~~~l~~H~~~~h  143 (147)
                      .|.|.+|++.|-...++..||++|.
T Consensus       792 iFpCreC~kvF~KiKSrNAHMK~Hr  816 (907)
T KOG4167|consen  792 IFPCRECGKVFFKIKSRNAHMKTHR  816 (907)
T ss_pred             eeehHHHHHHHHHHhhhhHHHHHHH
Confidence            4889999999999999999999985

>PF12907 zf-met2: Zinc-binding

Probab=86.88  E-value=0.61  Score=21.61  Aligned_cols=26  Identities=23%  Similarity=0.513  Sum_probs=13.5

Q ss_pred             ccCCCch---hccCChHHHHhHHHhhhcc
Q psy8937         120 LFCPLCQ---KCFKNKLYLRRHVISFHEN  145 (147)
Q Consensus       120 ~~C~~C~---~~f~~~~~l~~H~~~~h~~  145 (147)
                      +.|.+|.   ........|..|....|..
T Consensus         2 i~C~iC~qtF~~t~~~~~L~eH~enKHpK   30 (40)
T PF12907_consen    2 IICKICRQTFMQTTNEPQLKEHAENKHPK   30 (40)
T ss_pred             cCcHHhhHHHHhcCCHHHHHHHHHccCCC
Confidence            4566666   2333445566666555544

>KOG2231|consensus

Probab=86.80  E-value=2  Score=32.73  Aligned_cols=84  Identities=24%  Similarity=0.521  Sum_probs=52.4

Q ss_pred             HHHHHHHHHhcC-CC----CcCCCCchhhhcChHHHHHHHhhhcCCCCccCCCCCCCCCCCcCCcccccc------cccC
Q psy8937          33 SNLKQHIRLIHL-PG----ILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDARYCKIC------GKHY  101 (147)
Q Consensus        33 ~~l~~h~~~~~~-~~----~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c------~~~~  101 (147)
                      ..|..|+...-. ..    --.|..|...|.....|.+|++..+                    |.|..|      +.-|
T Consensus       163 ~el~~h~~~gd~d~~s~rGhp~C~~C~~~fld~~el~rH~~~~h--------------------~~chfC~~~~~~neyy  222 (669)
T KOG2231|consen  163 AELNLHLMFGDPDDESCRGHPLCKFCHERFLDDDELYRHLRFDH--------------------EFCHFCDYKTGQNEYY  222 (669)
T ss_pred             HHHHHHHhcCCCccccccCCccchhhhhhhccHHHHHHhhccce--------------------eheeecCcccccchhc
Confidence            456666653222 11    1468999999999999999996444                    346666      3566


Q ss_pred             CChHHHHHHHHHHhCCCcccCC--Cch-hccCChHHHHhHHH
Q psy8937         102 SNSSNLKQHIRLIHLPGILFCP--LCQ-KCFKNKLYLRRHVI  140 (147)
Q Consensus       102 ~~~~~l~~H~~~~~~~~~~~C~--~C~-~~f~~~~~l~~H~~  140 (147)
                      .....|..|.+.++    |.|.  .|. +.|.....+..+++
T Consensus       223 ~~~~dLe~HfR~~H----flCE~~~C~~~~f~~~~~~ei~lk  260 (669)
T KOG2231|consen  223 NDYDDLEEHFRKGH----FLCEEEFCRTKKFYVAFELEIELK  260 (669)
T ss_pred             ccchHHHHHhhhcC----ccccccccccceeeehhHHHHHHH
Confidence            77888999888655    5565  454 33333334444444

>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300

Probab=86.34  E-value=0.35  Score=28.46  Aligned_cols=30  Identities=17%  Similarity=0.326  Sum_probs=23.8

Q ss_pred             cccccccccCCChHHHHHHHHHHhCCCcccCCCchhccCCh
Q psy8937          92 RYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNK  132 (147)
Q Consensus        92 ~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~  132 (147)
                      ..|+.|+..|....           ..|..|+.||..|...
T Consensus        10 r~Cp~cg~kFYDLn-----------k~p~vcP~cg~~~~~~   39 (129)
T TIGR02300        10 RICPNTGSKFYDLN-----------RRPAVSPYTGEQFPPE   39 (129)
T ss_pred             ccCCCcCccccccC-----------CCCccCCCcCCccCcc
Confidence            46999999987653           3688999999988665

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.

>KOG2785|consensus

Probab=85.82  E-value=0.98  Score=31.76  Aligned_cols=55  Identities=20%  Similarity=0.288  Sum_probs=44.7

Q ss_pred             CcccccccccccCChHHHHHHHHHhcCC-CC----------------------cCCCCch---hhhcChHHHHHHHhhhc
Q psy8937          18 DARYCKICGKHYSNSSNLKQHIRLIHLP-GI----------------------LFCPLCQ---KCFKNKLYLRRHVGTYT   71 (147)
Q Consensus        18 ~~~~C~~C~~~f~~~~~l~~h~~~~~~~-~~----------------------~~C~~C~---~~f~~~~~l~~H~~~~~   71 (147)
                      .|=-|-.|++.+.....-..||..+|+- .|                      +.|-.|.   +.|.+....+.||....
T Consensus       165 ~Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~~K~  244 (390)
T KOG2785|consen  165 IPTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMRDKG  244 (390)
T ss_pred             CCcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHhhcc
Confidence            4567999999999999999999988874 22                      5677777   99999999999997554


Q ss_pred             C
Q psy8937          72 H   72 (147)
Q Consensus        72 ~   72 (147)
                      +
T Consensus       245 H  245 (390)
T KOG2785|consen  245 H  245 (390)
T ss_pred             C
Confidence            3

>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional

Probab=85.11  E-value=0.57  Score=23.63  Aligned_cols=33  Identities=18%  Similarity=0.343  Sum_probs=20.8

Q ss_pred             CCcccccccccCCChHHHHHHHHHHhCCCcccCCCchh
Q psy8937          90 DARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQK  127 (147)
Q Consensus        90 ~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C~~  127 (147)
                      ..|.|+.||.....+..     +--....+|.|+.||.
T Consensus        24 ~~F~CPnCG~~~I~RC~-----~CRk~~~~Y~CP~CGF   56 (59)
T PRK14890         24 VKFLCPNCGEVIIYRCE-----KCRKQSNPYTCPKCGF   56 (59)
T ss_pred             CEeeCCCCCCeeEeech-----hHHhcCCceECCCCCC
Confidence            45679999876333321     1123346899999985

>COG2879 Uncharacterized small protein [Function unknown]

Probab=84.15  E-value=1.3  Score=22.62  Aligned_cols=19  Identities=11%  Similarity=0.037  Sum_probs=14.9

Q ss_pred             cCChHHHHhHHHhhhccCC
Q psy8937         129 FKNKLYLRRHVISFHENAT  147 (147)
Q Consensus       129 f~~~~~l~~H~~~~h~~~~  147 (147)
                      ......+..||+.+|+++|
T Consensus        22 vpdYdnYVehmr~~hPd~p   40 (65)
T COG2879          22 VPDYDNYVEHMRKKHPDKP   40 (65)
T ss_pred             CCcHHHHHHHHHHhCcCCC
Confidence            3456778899999998876

>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function

Probab=83.69  E-value=0.66  Score=27.53  Aligned_cols=30  Identities=30%  Similarity=0.704  Sum_probs=20.6

Q ss_pred             CcccccccccCCChHHHHHHHHHHhCCCcccCCCch-hccC
Q psy8937          91 ARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQ-KCFK  130 (147)
Q Consensus        91 ~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C~-~~f~  130 (147)
                      |++|..|++.|...+.-   +.       -.|+.|| +.|.
T Consensus         1 PH~Ct~Cg~~f~dgs~e---il-------~GCP~CGg~kF~   31 (131)
T PF09845_consen    1 PHQCTKCGRVFEDGSKE---IL-------SGCPECGGNKFQ   31 (131)
T ss_pred             CcccCcCCCCcCCCcHH---HH-------ccCcccCCcceE
Confidence            46799999999987631   11       2488898 4444

>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins

Probab=82.87  E-value=0.99  Score=26.99  Aligned_cols=27  Identities=37%  Similarity=0.629  Sum_probs=16.1

Q ss_pred             ccCcccccccccccCChHHHHHHHHHhcCC
Q psy8937          16 SLDARYCKICGKHYSNSSNLKQHIRLIHLP   45 (147)
Q Consensus        16 ~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~   45 (147)
                      ..+..+|-+||+.|..   |.+|++.||+-
T Consensus        69 ~~d~i~clecGk~~k~---LkrHL~~~~gl   95 (132)
T PF05443_consen   69 TPDYIICLECGKKFKT---LKRHLRTHHGL   95 (132)
T ss_dssp             -SS-EE-TBT--EESB---HHHHHHHTT-S
T ss_pred             ccCeeEEccCCcccch---HHHHHHHccCC
Confidence            4567789999998876   47888877654

The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.

>KOG2593|consensus

Probab=82.68  E-value=0.67  Score=33.11  Aligned_cols=43  Identities=19%  Similarity=0.366  Sum_probs=30.9

Q ss_pred             CccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCchhhh
Q psy8937          12 KPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCF   57 (147)
Q Consensus        12 ~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C~~~f   57 (147)
                      +..++...|.|+.|.+.|.....++.-   -.....|.|..|+...
T Consensus       121 ~d~t~~~~Y~Cp~C~kkyt~Lea~~L~---~~~~~~F~C~~C~gel  163 (436)
T KOG2593|consen  121 RDDTNVAGYVCPNCQKKYTSLEALQLL---DNETGEFHCENCGGEL  163 (436)
T ss_pred             hhccccccccCCccccchhhhHHHHhh---cccCceEEEecCCCch
Confidence            344567889999999999877666532   3334578899888664

>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]

Probab=82.07  E-value=0.53  Score=22.85  Aligned_cols=31  Identities=19%  Similarity=0.422  Sum_probs=21.1

Q ss_pred             cCcccccccccccCChHHHHHHHHHhcCCCCcCCCCchhhh
Q psy8937          17 LDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCF   57 (147)
Q Consensus        17 ~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C~~~f   57 (147)
                      ...|.|..||+.|..          -.......|+.||...
T Consensus         4 ~~~Y~C~~Cg~~~~~----------~~~~~~irCp~Cg~rI   34 (49)
T COG1996           4 MMEYKCARCGREVEL----------DQETRGIRCPYCGSRI   34 (49)
T ss_pred             eEEEEhhhcCCeeeh----------hhccCceeCCCCCcEE
Confidence            457999999998822          1223457899998654

>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]

Probab=81.69  E-value=2.7  Score=28.93  Aligned_cols=91  Identities=16%  Similarity=0.265  Sum_probs=43.1

Q ss_pred             CCcCCCCchhhhcChHHHHHHHhhhcCCCCccCCCCCCCCCCCcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCc
Q psy8937          46 GILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC  125 (147)
Q Consensus        46 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C  125 (147)
                      .|..||.|.-.......|.+-..--...+++...+....+.    .--|-.|--.|+-...-..  ..-.....|.|+.|
T Consensus       321 LPi~CP~Csl~LilsthLarSyhhL~PLk~f~E~p~~~~~k----s~~Cf~CQ~~fp~~~~~~~--~~~~ss~rY~Ce~C  394 (421)
T COG5151         321 LPISCPICSLQLILSTHLARSYHHLYPLKPFVEKPEGTNPK----STHCFVCQGPFPKPPVSPF--DESTSSGRYQCELC  394 (421)
T ss_pred             CCccCcchhHHHHHHHHHHHHHHhhccCcccccccCCCCCC----CccceeccCCCCCCCCCcc--cccccccceechhh
Confidence            46778888766665555654431112233443333222211    1124445444433211000  00112234778888


Q ss_pred             hhccCChHHHHhHHHhh
Q psy8937         126 QKCFKNKLYLRRHVISF  142 (147)
Q Consensus       126 ~~~f~~~~~l~~H~~~~  142 (147)
                      ...|-..-+.-.|-..|
T Consensus       395 K~~FC~dCdvfiHe~Lh  411 (421)
T COG5151         395 KSTFCSDCDVFIHETLH  411 (421)
T ss_pred             hhhhhhhhHHHHHHHHh
Confidence            87777776666665443

>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair

Probab=81.27  E-value=0.39  Score=23.54  Aligned_cols=22  Identities=23%  Similarity=0.338  Sum_probs=8.7

Q ss_pred             CCcCCCCchhhhcChHHHHHHH
Q psy8937          46 GILFCPLCQKCFKNKLYLRRHV   67 (147)
Q Consensus        46 ~~~~C~~C~~~f~~~~~l~~H~   67 (147)
                      ..|.|+.|+..|-..=++-.|.
T Consensus        20 ~~y~C~~C~~~FC~dCD~fiHE   41 (51)
T PF07975_consen   20 SRYRCPKCKNHFCIDCDVFIHE   41 (51)
T ss_dssp             EEE--TTTT--B-HHHHHTTTT
T ss_pred             CeEECCCCCCccccCcChhhhc
Confidence            3455555555555555554444

It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.

>PF13451 zf-trcl: Probable zinc-binding domain

Probab=81.24  E-value=1.1  Score=21.77  Aligned_cols=39  Identities=18%  Similarity=0.364  Sum_probs=26.8

Q ss_pred             cCcccccccccccCChHHHHHHHHHhcC-CCCcCCCCchh
Q psy8937          17 LDARYCKICGKHYSNSSNLKQHIRLIHL-PGILFCPLCQK   55 (147)
Q Consensus        17 ~~~~~C~~C~~~f~~~~~l~~h~~~~~~-~~~~~C~~C~~   55 (147)
                      ++.++|..||..|.....-+.......- ..|-.|+.|-.
T Consensus         2 Dk~l~C~dCg~~FvfTa~EQ~fy~eKgf~n~p~RC~~CR~   41 (49)
T PF13451_consen    2 DKTLTCKDCGAEFVFTAGEQKFYAEKGFDNEPKRCPSCRQ   41 (49)
T ss_pred             CeeEEcccCCCeEEEehhHHHHHHhcCCcCCCccCHHHHH
Confidence            4678999999988877766655554222 24677887754

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=81.19  E-value=0.76  Score=19.06  Aligned_cols=10  Identities=50%  Similarity=1.251  Sum_probs=6.7

Q ss_pred             cCCCchhccC
Q psy8937         121 FCPLCQKCFK  130 (147)
Q Consensus       121 ~C~~C~~~f~  130 (147)
                      .|+.||..|.
T Consensus        16 ~Cp~CG~~F~   25 (26)
T PF10571_consen   16 FCPHCGYDFE   25 (26)
T ss_pred             cCCCCCCCCc
Confidence            4777777664

Several members are annotated as putative helicases.

>KOG3408|consensus

Probab=81.08  E-value=1.4  Score=25.79  Aligned_cols=26  Identities=23%  Similarity=0.535  Sum_probs=21.8

Q ss_pred             ccCcccccccccccCChHHHHHHHHH
Q psy8937          16 SLDARYCKICGKHYSNSSNLKQHIRL   41 (147)
Q Consensus        16 ~~~~~~C~~C~~~f~~~~~l~~h~~~   41 (147)
                      +...|.|-.|.+.|.+...|..|.+.
T Consensus        54 G~GqfyCi~CaRyFi~~~~l~~H~kt   79 (129)
T KOG3408|consen   54 GGGQFYCIECARYFIDAKALKTHFKT   79 (129)
T ss_pred             CCceeehhhhhhhhcchHHHHHHHhc
Confidence            55678899999999999999888774

>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species

Probab=80.15  E-value=0.71  Score=18.77  Aligned_cols=8  Identities=38%  Similarity=0.924  Sum_probs=4.9

Q ss_pred             cccCCCch
Q psy8937         119 ILFCPLCQ  126 (147)
Q Consensus       119 ~~~C~~C~  126 (147)
                      .|.|+.||
T Consensus        16 ~f~CPnCG   23 (24)
T PF07754_consen   16 PFPCPNCG   23 (24)
T ss_pred             eEeCCCCC
Confidence            46666665

It is likely to bind zinc via its four well-conserved cysteine residues.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	147
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		9e-09
1mey_C	87	Crystal Structure Of A Designed Zinc Finger Protein		2e-05
1mey_C	87	Crystal Structure Of A Designed Zinc Finger Protein		2e-04
2kmk_A	82	Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length =		7e-05
1a1f_A	90	Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc		8e-05
1a1i_A	90	Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		6e-04

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 48/117 (41%), Gaps = 16/117 (13%)
Query: 22  CKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPG 81
           C  CGK +S S +L +H R         CP C K F +K  L RH  T+T    Y+    
Sbjct: 24  CPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYK---- 79
Query: 82  ASKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRH 138
                       C  CGK +S  +NL+ H R         CP C K F    +LR H
Sbjct: 80  ------------CPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAH 124

>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To Dna Length = 87

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 40/92 (43%), Gaps = 16/92 (17%)
Query: 22  CKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPG 81
           C  CGK +S SSNL++H R         CP C K F     L++H  T+T    Y+    
Sbjct: 7   CPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK---- 62
Query: 82  ASKPLHSLDARYCKICGKHYSNSSNLKQHIRL 113
                       C  CGK +S S +L +H R 
Sbjct: 63  ------------CPECGKSFSRSDHLSRHQRT 82

>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To Dna Length = 87

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 41/96 (42%), Gaps = 17/96 (17%)
Query: 50  CPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDARYCKICGKHYSNSSNLKQ 109
           CP C K F     L++H  T+T    Y+                C  CGK +S SS+L++
Sbjct: 7   CPECGKSFSQSSNLQKHQRTHTGEKPYK----------------CPECGKSFSQSSDLQK 50
Query: 110 HIRLIHLPGILFCPLCQKCFKNKLYLRRHVISFHEN 145
           H R         CP C K F    +L RH  + H+N
Sbjct: 51  HQRTHTGEKPYKCPECGKSFSRSDHLSRHQRT-HQN 85

>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna Length = 82

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 45/92 (48%), Gaps = 18/92 (19%)
Query: 22  CKICGKHYSNSSNLKQHIRLIHLPGILF-CPLCQKCFKNKLYLRRHVGTYTHTPSYRSVP 80
           CKICGK +  SS L  H+ LIH     + C  C K F  K  +++H  T+ HT       
Sbjct: 4   CKICGKSFKRSSTLSTHL-LIHSDTRPYPCQYCGKRFHQKSDMKKH--TFIHT------- 53
Query: 81  GASKPLHSLDARYCKICGKHYSNSSNLKQHIR 112
              KP        C++CGK +S SSNL  H R
Sbjct: 54  -GEKP------HKCQVCGKAFSQSSNLITHSR 78

>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site) Length = 90

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 17/92 (18%)
Query: 25  CGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASK 84
           C + +S+SSNL +HIR+        C +C + F    +L  H+ T+T            K
Sbjct: 12  CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT----------GEK 61
Query: 85  PLHSLDARYCKICGKHYSNSSNLKQHIRLIHL 116
           P        C ICG+ ++ S   K+H + IHL
Sbjct: 62  PF------ACDICGRKFARSDERKRHTK-IHL 86

>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 17/92 (18%)
Query: 25  CGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASK 84
           C + +S S++L +HIR+        C +C + F    +L  H+ T+T            K
Sbjct: 12  CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT----------GEK 61
Query: 85  PLHSLDARYCKICGKHYSNSSNLKQHIRLIHL 116
           P        C ICG+ ++ S   K+H + IHL
Sbjct: 62  PF------ACDICGRKFARSDERKRHTK-IHL 86

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	147
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	4e-09
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	1e-05
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	8e-09
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	2e-08
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	4e-07
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	3e-07
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	3e-07
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	1e-06
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	1e-06
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	3e-07
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	4e-07
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	3e-05
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	5e-07
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	7e-07
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	1e-06
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	5e-06
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	2e-06
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	9e-06
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	7e-05
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	2e-06
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	5e-04
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	4e-06
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	8e-06
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	4e-06
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	1e-05
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	5e-06
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	5e-06
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	8e-06
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	1e-05
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	2e-05
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	2e-05
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	4e-05
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1} Len	6e-05
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1} Len	1e-04
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	7e-04

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 51.1 bits (123), Expect = 4e-09
 Identities = 34/131 (25%), Positives = 44/131 (33%), Gaps = 31/131 (23%)

Query: 22  CKICGKHYSNSSNLKQHIR---------LIHLPGILFCPLCQKCFKNKLYLRRHVGTYTH 72
            K C + +S    L  H+            H+     CP   K FK K  L  H+    H
Sbjct: 28  KKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIR--VH 85

Query: 73  TPSYRSVPGASKPLHSLDARYCKI--CGKHYSNSSNLKQHIRLIHL---PGILFCPLCQK 127
           T          KP        C    CGK ++ S NLK H R  H    P       C +
Sbjct: 86  T--------GEKPFP------CPFPGCGKIFARSENLKIHKR-THTGEKPFKCEFEGCDR 130

Query: 128 CFKNKLYLRRH 138
            F N    ++H
Sbjct: 131 RFANSSDRKKH 141

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 41.5 bits (98), Expect = 1e-05
 Identities = 26/119 (21%), Positives = 35/119 (29%), Gaps = 14/119 (11%)

Query: 26  GKHYSNSSNLKQHIRL--IHLPGILF-CPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGA 82
           G   S+   +KQ +    I    +      C + F     L  HV               
Sbjct: 1   GSSGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPE------ 54

Query: 83  SKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHL---PGILFCPLCQKCFKNKLYLRRH 138
            +  H      C   GK +     L  HIR +H    P     P C K F     L+ H
Sbjct: 55  -QNNHVCYWEECPREGKSFKAKYKLVNHIR-VHTGEKPFPCPFPGCGKIFARSENLKIH 111

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 49.0 bits (118), Expect = 8e-09
 Identities = 30/97 (30%), Positives = 43/97 (44%), Gaps = 20/97 (20%)

Query: 22  CKICGKHYSNSSNLKQHIRLIHL---PGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRS 78
           C+ICGK + +  +L +H    H    P    CP+C   FK K  +  HV   +H  S   
Sbjct: 10  CEICGKIFRDVYHLNRHKL-SHSGEKPYS--CPVCGLRFKRKDRMSYHV--RSHDGS--- 61

Query: 79  VPGASKPLHSLDARYCKICGKHYSNSSNLKQHIRLIH 115
                KP        C+ CGK +S   +L  HI+ +H
Sbjct: 62  ---VGKPYI------CQSCGKGFSRPDHLNGHIKQVH 89

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 48.3 bits (116), Expect = 2e-08
 Identities = 29/125 (23%), Positives = 43/125 (34%), Gaps = 29/125 (23%)

Query: 22  CKICGKHYSNSSNLKQHIRLIHL---PGILFCPLCQKCFKNKLYLRRH-VGTYTHTPSYR 77
           C  C K + +   LK H R  H    P    CP C KC+  K  L  H      +     
Sbjct: 10  CPTCHKKFLSKYYLKVHNR-KHTGEKPFE--CPKCGKCYFRKENLLEHEARNCMNR---- 62

Query: 78  SVPGASKPLHSLDARY-CKICGKHYSNSSNLKQHIRLIHL---PGILFCPLCQKCFKNKL 133
               + +        + C +C + +     L+ H+   H    P    C  C + F  K 
Sbjct: 63  ----SEQV-------FTCSVCQETFRRRMELRLHMV-SHTGEMP--YKCSSCSQQFMQKK 108

Query: 134 YLRRH 138
            L+ H
Sbjct: 109 DLQSH 113

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 45.2 bits (108), Expect = 4e-07
 Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 25/100 (25%)

Query: 22  CKICGKHYSNSSNLKQHIRL--IHL---PGILFCPLCQKCFKNKLYLRRHVGTYTHTPSY 76
           C  CGK Y    NL +H     ++         C +CQ+ F+ ++ LR H    +HT   
Sbjct: 38  CPKCGKCYFRKENLLEHEARNCMNRSEQVFT--CSVCQETFRRRMELRLH--MVSHT--- 90

Query: 77  RSVPGASKPLHSLDARY-CKICGKHYSNSSNLKQHIRLIH 115
                   P       Y C  C + +    +L+ H+  +H
Sbjct: 91  -----GEMP-------YKCSSCSQQFMQKKDLQSHMIKLH 118

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 44.3 bits (106), Expect = 3e-07
 Identities = 36/98 (36%), Positives = 46/98 (46%), Gaps = 25/98 (25%)

Query: 22  CKICGKHYSNSSNLKQHIRLIHL---PGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRS 78
           CKICGK +  SS L  H+  IH    P    C  C K F  K  +++H  T+ HT     
Sbjct: 4   CKICGKSFKRSSTLSTHLL-IHSDTRPYP--CQYCGKRFHQKSDMKKH--TFIHT----- 53

Query: 79  VPGASKPLHSLDARY-CKICGKHYSNSSNLKQHIRLIH 115
                KP       + C++CGK +S SSNL  H R  H
Sbjct: 54  ---GEKP-------HKCQVCGKAFSQSSNLITHSR-KH 80

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 44.1 bits (105), Expect = 3e-07
 Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 14/66 (21%)

Query: 50  CPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDARYCKICGKHYSNSSNLKQ 109
           C +C + + +     RH  T              K         C  C K ++   N+  
Sbjct: 13  CKVCSRVYTHISNFCRHYVTSHKR--------NVKVYP------CPFCFKEFTRKDNMTA 58

Query: 110 HIRLIH 115
           H+++IH
Sbjct: 59  HVKIIH 64

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 42.5 bits (101), Expect = 1e-06
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 22 CKICGKHYSNSSNLKQHIRLIHLPGI--LFCPLCQKCFKNKLYLRRH 66
          CK+C + Y++ SN  +H    H   +    CP C K F  K  +  H
Sbjct: 13 CKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAH 59

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 42.5 bits (101), Expect = 1e-06
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 94  CKICGKHYSNSSNLKQHIRLIHLPGI--LFCPLCQKCFKNKLYLRRH 138
           CK+C + Y++ SN  +H    H   +    CP C K F  K  +  H
Sbjct: 13  CKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAH 59

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 44.4 bits (106), Expect = 3e-07
 Identities = 19/94 (20%), Positives = 32/94 (34%), Gaps = 23/94 (24%)

Query: 22  CKICGKHYSNSSNLKQHIRLIHL---PGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRS 78
           C+IC +++S S +L  HIR  H    P    C +C + F      +RH       P    
Sbjct: 6   CRICMRNFSRSDHLTTHIR-THTGEKP--FACDICGRKFARSDERKRHRDIQHILP-IL- 60

Query: 79  VPGASKPLHSLDARYCKICGKHYSNSSNLKQHIR 112
                               +  S + +L+  + 
Sbjct: 61  ---------------EDKVEELLSKNYHLENEVA 79

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 44.8 bits (107), Expect = 4e-07
 Identities = 37/121 (30%), Positives = 46/121 (38%), Gaps = 26/121 (21%)

Query: 25  CGKHYSNSSNLKQHIRLIHL---PGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPG 81
           C K Y   S+L+ H R  H    P       C++ F     L+RH     HT        
Sbjct: 14  CNKRYFKLSHLQMHSR-KHTGEKPYQCDFKDCERRFSRSDQLKRHQ--RRHT-------- 62

Query: 82  ASKPLHSLDARY-CKICGKHYSNSSNLKQHIRLIHL---PGILFCPLCQKCFKNKLYLRR 137
             KP       + CK C + +S S +LK H R  H    P     P CQK F     L R
Sbjct: 63  GVKP-------FQCKTCQRKFSRSDHLKTHTR-THTGEKPFSCRWPSCQKKFARSDELVR 114

Query: 138 H 138
           H
Sbjct: 115 H 115

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 40.2 bits (95), Expect = 3e-05
 Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 25/96 (26%)

Query: 25  CGKHYSNSSNLKQHIRLIHL---PGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPG 81
           C + +S S  LK+H R  H    P    C  CQ+ F    +L+ H  T THT        
Sbjct: 44  CERRFSRSDQLKRHQR-RHTGVKPFQ--CKTCQRKFSRSDHLKTH--TRTHT-------- 90

Query: 82  ASKPLHSLDARYCKI--CGKHYSNSSNLKQHIRLIH 115
             KP        C+   C K ++ S  L +H   +H
Sbjct: 91  GEKPFS------CRWPSCQKKFARSDELVRHHN-MH 119

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 44.3 bits (106), Expect = 5e-07
 Identities = 27/98 (27%), Positives = 39/98 (39%), Gaps = 25/98 (25%)

Query: 22  CKICGKHYSNSSNLKQHIRLIHL---PGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRS 78
           C++CGK +S    LK H+R  H    P    C  C     +   L +H+    H+     
Sbjct: 11  CEVCGKCFSRKDKLKTHMR-CHTGVKP--YKCKTCDYAAADSSSLNKHL--RIHS----- 60

Query: 79  VPGASKPLHSLDARY-CKICGKHYSNSSNLKQHIRLIH 115
                +P       + C+IC     NSS L  H+R  H
Sbjct: 61  ---DERP-------FKCQICPYASRNSSQLTVHLR-SH 87

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 43.6 bits (104), Expect = 7e-07
 Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 23/94 (24%)

Query: 25  CGKHYSNSSNLKQHIRLIHL---PGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPG 81
           C + +S S +L +HIR IH    P    C +C + F    +L  H    THT        
Sbjct: 12  CDRRFSQSGSLTRHIR-IHTGQKP--FQCRICMRNFSRSDHLTTH--IRTHT-------- 58

Query: 82  ASKPLHSLDARYCKICGKHYSNSSNLKQHIRLIH 115
             KP        C ICG+ ++ S   K+H + IH
Sbjct: 59  GEKPFA------CDICGRKFARSDERKRHTK-IH 85

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 44.1 bits (105), Expect = 1e-06
 Identities = 33/135 (24%), Positives = 43/135 (31%), Gaps = 30/135 (22%)

Query: 22  CKICGKHYSNSSNLKQHIRLIHLPG--------ILFCPLCQKCFKNKLYLRRHVGTYTHT 73
              C + + +   L  HI   H+ G           C    + FK +  L  H+    HT
Sbjct: 6   WDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHM--RRHT 63

Query: 74  PSYRSVPGASKPLHSLDARYCKI--CGKHYSNSSNLKQHIRLIH---LPGILFCPLCQKC 128
                     KP        C    C K YS   NLK H+R  H    P +     C K 
Sbjct: 64  --------GEKPHK------CTFEGCRKSYSRLENLKTHLR-SHTGEKPYMCEHEGCSKA 108

Query: 129 FKNKLYLRRHVISFH 143
           F N     +H    H
Sbjct: 109 FSNASDRAKHQNRTH 123

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 42.6 bits (101), Expect = 5e-06
 Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 22/96 (22%)

Query: 25  CGKHYSNSSNLKQHIRLIH---LPGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPG 81
           C K YS   NLK H+R  H    P +     C K F N     +H    TH+        
Sbjct: 75  CRKSYSRLENLKTHLR-SHTGEKPYMCEHEGCSKAFSNASDRAKHQ-NRTHS-------- 124

Query: 82  ASKPLHSLDARYCKI--CGKHYSNSSNLKQHIRLIH 115
             KP        CK+  C K Y++ S+L++H++   
Sbjct: 125 NEKPYV------CKLPGCTKRYTDPSSLRKHVK-TV 153

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 44.4 bits (106), Expect = 2e-06
 Identities = 45/124 (36%), Positives = 53/124 (42%), Gaps = 30/124 (24%)

Query: 22  CKICGKHYSNSSNLKQHIRLIHL---PGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRS 78
           C  CGK +S S +L +H R  H    P    CP C K F +K  L RH    THT     
Sbjct: 24  CPECGKSFSRSDHLAEHQR-THTGEKPYK--CPECGKSFSDKKDLTRH--QRTHT----- 73

Query: 79  VPGASKPLHSLDARY-CKICGKHYSNSSNLKQHIRLIHL---PGILFCPLCQKCFKNKLY 134
                KP       Y C  CGK +S  +NL+ H R  H    P    CP C K F    +
Sbjct: 74  ---GEKP-------YKCPECGKSFSQRANLRAHQR-THTGEKPYA--CPECGKSFSQLAH 120

Query: 135 LRRH 138
           LR H
Sbjct: 121 LRAH 124

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 42.4 bits (101), Expect = 9e-06
 Identities = 43/124 (34%), Positives = 49/124 (39%), Gaps = 30/124 (24%)

Query: 22  CKICGKHYSNSSNLKQHIRLIHL---PGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRS 78
           C  CGK +S  +NL+ H R  H    P    CP C K F    +LR H    THT     
Sbjct: 80  CPECGKSFSQRANLRAHQR-THTGEKPYA--CPECGKSFSQLAHLRAH--QRTHT----- 129

Query: 79  VPGASKPLHSLDARY-CKICGKHYSNSSNLKQHIRLIHL---PGILFCPLCQKCFKNKLY 134
                KP       Y C  CGK +S   NL  H R  H    P    CP C K F  +  
Sbjct: 130 ---GEKP-------YKCPECGKSFSREDNLHTHQR-THTGEKPYK--CPECGKSFSRRDA 176

Query: 135 LRRH 138
           L  H
Sbjct: 177 LNVH 180

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 39.7 bits (94), Expect = 7e-05
 Identities = 32/98 (32%), Positives = 38/98 (38%), Gaps = 25/98 (25%)

Query: 22  CKICGKHYSNSSNLKQHIRLIHL---PGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRS 78
           C  CGK +S  ++L+ H R  H    P    CP C K F  +  L  H    THT     
Sbjct: 108 CPECGKSFSQLAHLRAHQR-THTGEKPYK--CPECGKSFSREDNLHTH--QRTHT----- 157

Query: 79  VPGASKPLHSLDARY-CKICGKHYSNSSNLKQHIRLIH 115
                KP       Y C  CGK +S    L  H R  H
Sbjct: 158 ---GEKP-------YKCPECGKSFSRRDALNVHQR-TH 184

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 44.1 bits (105), Expect = 2e-06
 Identities = 28/129 (21%), Positives = 43/129 (33%), Gaps = 28/129 (21%)

Query: 25  CGKHYSNSSNLKQHIRLIH-----LPGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSV 79
           C   ++  +N+K+H             +     C K FK    L+ H   ++HT      
Sbjct: 80  CDLRFTTKANMKKHFN-RFHNIKICVYVCHFENCGKAFKKHNQLKVH--QFSHT------ 130

Query: 80  PGASKPLHSLDARY-CK--ICGKHYSNSSNLKQHIRLIHLPGILF-CPLCQKCFKNKLYL 135
                P       Y C    C K +S  S LK+H + +H          C    K     
Sbjct: 131 --QQLP-------YECPHEGCDKRFSLPSRLKRHEK-VHAGYPCKKDDSCSFVGKTWTLY 180

Query: 136 RRHVISFHE 144
            +HV   H+
Sbjct: 181 LKHVAECHQ 189

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 37.6 bits (88), Expect = 5e-04
 Identities = 28/125 (22%), Positives = 43/125 (34%), Gaps = 30/125 (24%)

Query: 25  CGKHYSNSSNLKQHIRLIHL---PGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPG 81
           CG  Y+ +  L+ H+   H    P       C+K F +  +L RH    THT        
Sbjct: 20  CGAAYNKNWKLQAHLC-KHTGEKPFPCKEEGCEKGFTSLHHLTRHS--LTHT-------- 68

Query: 82  ASKPLHSLDARY-CK--ICGKHYSNSSNLKQHIRLIH-----LPGILFCPLCQKCFKNKL 133
             K        + C    C   ++  +N+K+H             +     C K FK   
Sbjct: 69  GEKN-------FTCDSDGCDLRFTTKANMKKHFN-RFHNIKICVYVCHFENCGKAFKKHN 120

Query: 134 YLRRH 138
            L+ H
Sbjct: 121 QLKVH 125

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 41.6 bits (98), Expect = 4e-06
 Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 7/66 (10%)

Query: 22 CKICGKHYSNSSNLKQHIRLIHLPGILF----CPLCQKCFKNKLYLRRHVGTYTHTPSYR 77
          C+ICG      ++L  H R  H   +      C  C K F+    +  H       P+  
Sbjct: 10 CEICGFTCRQKASLNWHQR-KHAETVAALRFPCEFCGKRFEKPDSVAAHR--SKSHPALL 66

Query: 78 SVPGAS 83
            P  S
Sbjct: 67 LAPQES 72

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 40.9 bits (96), Expect = 8e-06
 Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 5/54 (9%)

Query: 94  CKICGKHYSNSSNLKQHIRLIHLPGILF----CPLCQKCFKNKLYLRRHVISFH 143
           C+ICG      ++L  H R  H   +      C  C K F+    +  H    H
Sbjct: 10  CEICGFTCRQKASLNWHQR-KHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 42.5 bits (101), Expect = 4e-06
 Identities = 35/122 (28%), Positives = 49/122 (40%), Gaps = 23/122 (18%)

Query: 22  CKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPG 81
            K C K + ++S +++H+   H P +  C  C K F     L+RH     HT        
Sbjct: 10  HKGCTKMFRDNSAMRKHLH-THGPRVHVCAECGKAFVESSKLKRHQL--VHT-------- 58

Query: 82  ASKPLHSLDARYCKI--CGKHYSNSSNLKQHIRLIHL---PGILFCPLCQKCFKNKLYLR 136
             KP        C    CGK +S   NL+ H+R IH    P +     C K F     L+
Sbjct: 59  GEKPFQ------CTFEGCGKRFSLDFNLRTHVR-IHTGDRPYVCPFDGCNKKFAQSTNLK 111

Query: 137 RH 138
            H
Sbjct: 112 SH 113

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 41.0 bits (97), Expect = 1e-05
 Identities = 31/99 (31%), Positives = 38/99 (38%), Gaps = 23/99 (23%)

Query: 22  CKICGKHYSNSSNLKQHIRLIHL---PGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRS 78
           C  CGK +  SS LK+H   +H    P       C K F     LR HV    HT     
Sbjct: 37  CAECGKAFVESSKLKRHQL-VHTGEKPFQCTFEGCGKRFSLDFNLRTHV--RIHT----- 88

Query: 79  VPGASKPLHSLDARYCKI--CGKHYSNSSNLKQHIRLIH 115
                +P        C    C K ++ S+NLK HI   H
Sbjct: 89  ---GDRPYV------CPFDGCNKKFAQSTNLKSHIL-TH 117

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 42.1 bits (98), Expect = 5e-06
 Identities = 16/112 (14%), Positives = 29/112 (25%), Gaps = 11/112 (9%)

Query: 30  SNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSL 89
           S+ S+ K +  +        C  C   +   + L  H+    H                 
Sbjct: 2   SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDN------- 54

Query: 90  DARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVIS 141
                           +L +         +L C  C   F++   L  H+I 
Sbjct: 55  ----NNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIK 102

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 41.7 bits (99), Expect = 5e-06
 Identities = 31/98 (31%), Positives = 43/98 (43%), Gaps = 25/98 (25%)

Query: 22  CKICGKHYSNSSNLKQHIRLIHL---PGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRS 78
           CK CG+H++ S NL  H R  H    P    C +C K F+ + +LR H   Y H+     
Sbjct: 20  CKFCGRHFTKSYNLLIHER-THTDERPYT--CDICHKAFRRQDHLRDH--RYIHS----- 69

Query: 79  VPGASKPLHSLDARY-CKICGKHYSNSSNLKQHIRLIH 115
                KP       + C+ CGK +  S  L  H   +H
Sbjct: 70  ---KEKP-------FKCQECGKGFCQSRTLAVHKT-LH 96

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 41.0 bits (97), Expect = 8e-06
 Identities = 27/98 (27%), Positives = 37/98 (37%), Gaps = 21/98 (21%)

Query: 22  CKICGKHYSNSSNLKQHIRLIH---LPGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRS 78
              CGK Y+ SS+LK H+R  H    P       C   F     L RH     HT     
Sbjct: 10  YAGCGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYR--KHT----- 61

Query: 79  VPGASKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHL 116
                +P        C+ C + +S S +L  H++  H 
Sbjct: 62  ---GHRPFQ------CQKCDRAFSRSDHLALHMK-RHF 89

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 40.2 bits (95), Expect = 1e-05
 Identities = 15/94 (15%), Positives = 21/94 (22%), Gaps = 42/94 (44%)

Query: 22  CKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPG 81
           C IC   ++ S  +K HI                                          
Sbjct: 18  CYICHARFTQSGTMKMHIL------------------------------QKHT------E 41

Query: 82  ASKPLHSLDARYCKICGKHYSNSSNLKQHIRLIH 115
                H      C  C    +  S+L  H+R  H
Sbjct: 42  NVAKFH------CPHCDTVIARKSDLGVHLRKQH 69

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 39.8 bits (94), Expect = 2e-05
 Identities = 14/53 (26%), Positives = 19/53 (35%), Gaps = 4/53 (7%)

Query: 94  CKICGKHYSNSSNLKQHIRLIHLPGIL---FCPLCQKCFKNKLYLRRHVISFH 143
           C IC   ++ S  +K HI        +    CP C      K  L  H+   H
Sbjct: 18  CYICHARFTQSGTMKMHIL-QKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 40.3 bits (95), Expect = 2e-05
 Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 20/91 (21%)

Query: 25  CGKHYSNSSNLKQHIRLIH---LPGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPG 81
           C K Y+ SS+LK H+R  H    P       C   F     L RH   +T    ++    
Sbjct: 23  CTKVYTKSSHLKAHLR-THTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQ---- 77

Query: 82  ASKPLHSLDARYCKICGKHYSNSSNLKQHIR 112
                       C +C + +S S +L  H++
Sbjct: 78  ------------CGVCNRSFSRSDHLALHMK 96

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 39.3 bits (93), Expect = 4e-05
 Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 24/91 (26%)

Query: 25  CGKHYSNSSNLKQHIRLIHL---PGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPG 81
           CGK +++ S   +H+  +HL   P    C +C K FK K +L  H     HT        
Sbjct: 15  CGKSFTHKSQRDRHMS-MHLGLRPYG--CGVCGKKFKMKHHLVGH--MKIHT-------- 61

Query: 82  ASKPLHSLDARY-CKICGKHYSNSSNLKQHI 111
             KP       Y C IC K +    +  +H+
Sbjct: 62  GIKP-------YECNICAKRFMWRDSFHRHV 85

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1} Length = 129

 Score = 39.5 bits (91), Expect = 6e-05
 Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 18/93 (19%)

Query: 23  KICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGA 82
            I      + S+    +          CPLC   F + + L++H+    H          
Sbjct: 50  LIHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEH---------- 99

Query: 83  SKPLHSLDARYCKICGKHYSNSSNLKQHIRLIH 115
                    + C +C K ++++ +   H+   H
Sbjct: 100 --------TKVCPVCKKEFTSTDSALDHVCKKH 124

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1} Length = 129

 Score = 38.8 bits (89), Expect = 1e-04
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 93  YCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVISFH 143
            C +C   +S+S +LKQHIR      +  CP+C+K F +      HV   H
Sbjct: 76  VCPLCLMPFSSSVSLKQHIRYTEHTKV--CPVCKKEFTSTDSALDHVCKKH 124

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 35.6 bits (83), Expect = 7e-04
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 5/52 (9%)

Query: 25 CGKHYSNSSNLKQHIRLIHL---PGILFCPLCQKCFKNKLYLRRHVGTYTHT 73
          CG+ +SN   L  H +  H+         P C K F  K +L+ H     H+
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEH--MKLHS 64

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	147
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.97
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.97
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.96
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.96
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.95
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.95
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.95
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.94
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.93
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.93
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.93
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.92
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.9
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.89
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.89
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.89
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.88
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.87
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.87
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.86
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.86
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.86
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.85
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.85
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.85
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.84
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.84
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.84
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.84
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.83
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.83
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.83
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.82
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.82
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.8
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.8
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.79
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.79
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.78
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.78
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.77
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.77
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.76
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.75
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.75
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.75
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.73
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.73
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.73
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.71
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.71
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.7
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.7
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.7
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.69
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.69
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.68
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.67
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.67
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.67
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.67
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.67
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.65
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.64
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.64
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.61
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.61
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.61
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.6
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.6
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.58
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.58
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.58
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.57
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.57
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.55
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.54
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.54
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.53
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.52
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.5
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.47
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.46
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.44
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.42
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.41
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.4
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.38
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.36
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.34
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.33
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.33
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.32
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.31
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.31
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.31
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.31
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.31
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.3
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.3
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.3
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.3
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.3
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.3
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.3
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.3
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.3
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.3
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.29
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.29
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.29
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.29
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.29
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.29
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.29
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.29
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.29
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.29
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.29
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.29
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.29
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.29
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.28
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.28
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.28
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.28
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.28
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.28
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.28
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.28
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.28
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.28
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.28
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.28
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.28
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.28
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.28
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.28
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.27
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.27
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.27
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.27
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.27
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.27
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.27
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.26
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.26
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.26
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.26
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.26
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.26
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.26
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.26
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.26
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.26
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.26
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.26
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.26
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.26
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.26
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.26
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.26
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.26
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.25
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.25
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.25
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.25
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.25
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.25
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.25
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.25
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.25
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.24
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.24
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.24
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.24
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.24
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.24
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.23
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.23
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.23
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.23
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.23
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.23
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.23
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.22
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.22
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.22
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.22
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.22
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.22
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.22
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.21
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.21
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.21
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.21
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.21
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.21
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.21
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.2
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.2
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.2
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.2
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.2
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.2
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.2
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.2
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.19
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.19
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.19
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.19
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.19
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.19
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.19
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.19
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.19
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.19
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.19
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.19
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.19
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.19
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.19
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.18
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.18
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.18
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.18
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	99.18
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.18
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	99.18
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.18
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.18
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.17
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.17
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.17
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.17
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.17
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.16
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.16
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.16
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.16
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.16
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.16
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.16
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.16
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.15
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.15
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.15
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.15
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.15
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.15
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.15
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.15
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.15
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.15
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.14
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.14
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.14
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.13
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.13
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.13
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.13
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.13
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.13
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	99.12
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.12
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	99.12
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.12
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.12
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.12
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.12
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.11
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.11
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.11
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.11
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.11
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.11
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.11
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.1
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.1
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.1
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.09
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.09
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	99.09
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.08
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.08
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.08
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.07
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.07
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.06
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.06
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.06
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.05
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.05
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	99.05
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.04
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.04
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.04
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.03
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.03
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.03
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.02
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.02
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	99.02
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	99.0
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	99.0
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.99
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.99
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.97
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.97
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.96
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.95
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.94
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.93
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.93
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.92
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.91
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.91
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.91
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.89
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.88
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	98.37
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.86
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	98.37
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.85
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.85
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.84
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.84
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.83
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.82
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.79
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.77
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.75
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.75
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.74
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.74
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.72
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	98.17
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.69
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.69
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.62
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.61
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.61
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.6
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.59
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.58
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.58
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.55
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.55
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.55
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.54
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.48
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.47
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.46
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.46
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.46
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.44
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.42
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.41
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.4
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.39
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.37
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.36
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.35
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.67
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.33
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.67
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.31
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	98.28
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.27
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.56
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.19
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.14
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.0
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.72
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.62
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	97.59
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	97.38
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	97.34
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.09
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.84
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	96.73
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	96.46
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	94.92
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	94.82
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	94.12
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	93.38
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	93.25
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	92.97
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	92.44
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	92.29
2djr_A	76	Zinc finger BED domain-containing protein 2; C2H2	91.79
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	91.63
2ct5_A	73	Zinc finger BED domain containing protein 1; DREF	91.49
2jvx_A	28	NF-kappa-B essential modulator; CCHC classical zin	91.44
1wir_A	121	Protein arginine N-methyltransferase 3; C2H2 zinc	90.35
2k5c_A	95	Uncharacterized protein PF0385; structural genomic	90.02
1twf_L	70	ABC10-alpha, DNA-directed RNA polymerases I, II, a	89.48
4ayb_P	48	DNA-directed RNA polymerase; transferase, multi-su	89.3
2gmg_A	105	Hypothetical protein PF0610; winged-helix like pro	89.18
1wir_A	121	Protein arginine N-methyltransferase 3; C2H2 zinc	87.87
3sp4_A	204	Aprataxin-like protein; HIT domain, zinc finger, D	86.77
1yuz_A	202	Nigerythrin; rubrythrin, rubredoxin, hemerythrin,	86.39
3h0g_L	63	DNA-directed RNA polymerases I, II, and III subuni	86.03
3sp4_A	204	Aprataxin-like protein; HIT domain, zinc finger, D	85.93
2k9h_A	57	Glycoprotein; hantavirus, zinc finger, CCHC, metal	85.01
1x4u_A	84	Zinc finger, FYVE domain containing 27 isoform B;	84.95
3pwf_A	170	Rubrerythrin; non heme iron peroxidases, oxidative	83.99
2i5o_A	39	DNA polymerase ETA; zinc finger, DNA polymerase,PO	83.86
2czr_A	226	TBP-interacting protein; tata-binding protein (TBP	81.2
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	80.92
2kdx_A	119	HYPA, hydrogenase/urease nickel incorporation prot	80.74

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.97  E-value=7.2e-30  Score=150.01  Aligned_cols=118  Identities=24%  Similarity=0.383  Sum_probs=107.2

Q ss_pred             CccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCchhhhcChHHHHHHHhhhcCCCCccCCCCCCCCCCCcCCccc
Q psy8937          15 HSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDARYC   94 (147)
Q Consensus        15 ~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~C   94 (147)
                      ++.++|.|++|++.|.....|..|++.|++.++|.|+.|++.|.....|..|+..+...             .++++|.|
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~-------------~~~~~~~C   69 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMN-------------RSEQVFTC   69 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCC-------------SCCCCEEC
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhcC-------------CCCCCeEC
Confidence            46789999999999999999999999999999999999999999999999999754211             15678899


Q ss_pred             ccccccCCChHHHHHHHHHHhCCCcccCCCchhccCChHHHHhHHHhhhcc
Q psy8937          95 KICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVISFHEN  145 (147)
Q Consensus        95 ~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~  145 (147)
                      ..|++.|.....|..|++.|.++++|.|++|++.|.....|.+|++.+|++
T Consensus        70 ~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~  120 (124)
T 2dlq_A           70 SVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG  120 (124)
T ss_dssp             SSSCCEESSHHHHHHHHHHHSSSCSEECSSSCCEESSHHHHHHHHHHTSSC
T ss_pred             CCCCCccCCHHHHHHHHHHcCCCCCccCCCccchhCCHHHHHHHHHHHCCC
Confidence            999999999999999999999999999999999999999999999876654

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.97  E-value=1.1e-30  Score=163.89  Aligned_cols=136  Identities=26%  Similarity=0.399  Sum_probs=92.1

Q ss_pred             CccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCchhhhcChHHHHHHHhhhcCCCCccCCCCCCC-------
Q psy8937          12 KPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASK-------   84 (147)
Q Consensus        12 ~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~-------   84 (147)
                      ..+.+.++|.|++|++.|.....|..|++.+++.++|.|+.|++.|.....|..|+..+.+..++.-..-...       
T Consensus        42 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l  121 (190)
T 2i13_A           42 RTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHL  121 (190)
T ss_dssp             GCC---CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHTCCCEECTTTCCEESSHHHH
T ss_pred             HHcCCCCCccCCCcCchhCCHHHHHHHHHhcCCCCCccCcccCCccCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHH
Confidence            3445566777777777777777777777777777777777777777777777777766665544321111100       


Q ss_pred             -----CCCCcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCchhccCChHHHHhHHHhhhccCC
Q psy8937          85 -----PLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVISFHENAT  147 (147)
Q Consensus        85 -----~~~~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~  147 (147)
                           ...++++|.|..|++.|.....|..|++.|.++++|.|++|++.|.....|..|+++|+|++|
T Consensus       122 ~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~k~  189 (190)
T 2i13_A          122 RAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKT  189 (190)
T ss_dssp             HHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHTTC-----
T ss_pred             HHHHHHhCCCCCeECCCCCcccCCHHHHHHHHHhcCCCCCeECCCCCCccCCHHHHHHHHHhcCCCCC
Confidence                 011456778888888888888888888888888888888888888888888888888888775

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.96  E-value=2.1e-29  Score=158.12  Aligned_cols=141  Identities=26%  Similarity=0.362  Sum_probs=89.8

Q ss_pred             CCCCCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCchhhhcChHHHHHHHhhhcCCCCccCCCCCCC--
Q psy8937           7 VPGGSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASK--   84 (147)
Q Consensus         7 ~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~--   84 (147)
                      +......+.++++|.|++|++.|.....|..|++.+++.++|.|+.|++.|.....|..|+..+.+..++.-..-...  
T Consensus         9 l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~   88 (190)
T 2i13_A            9 SVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFS   88 (190)
T ss_dssp             ----------------------CCSSHHHHHGGGCC---CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEES
T ss_pred             chhhhhhcCCCCCCcCCCCccccCCHHHHHHHHHHcCCCCCccCCCcCchhCCHHHHHHHHHhcCCCCCccCcccCCccC
Confidence            444556677889999999999999999999999988888999999999999999999999998887655532111110  


Q ss_pred             ----------CCCCcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCchhccCChHHHHhHHHhhhccCC
Q psy8937          85 ----------PLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVISFHENAT  147 (147)
Q Consensus        85 ----------~~~~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~  147 (147)
                                ...++++|.|..|++.|.....|..|++.|.++++|.|++|++.|.....|..|+++|++++|
T Consensus        89 ~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~  161 (190)
T 2i13_A           89 QRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKP  161 (190)
T ss_dssp             CHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCC
T ss_pred             CHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHHhcCCCCC
Confidence                      011346677777777777777788887777777788888888888888888888888777654

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.96  E-value=5.2e-29  Score=145.38  Aligned_cols=112  Identities=29%  Similarity=0.425  Sum_probs=105.2

Q ss_pred             CccCcccccc--cccccCChHHHHHHHHHhcCCCCcCCC--CchhhhcChHHHHHHHhhhcCCCCccCCCCCCCCCCCcC
Q psy8937          15 HSLDARYCKI--CGKHYSNSSNLKQHIRLIHLPGILFCP--LCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLD   90 (147)
Q Consensus        15 ~~~~~~~C~~--C~~~f~~~~~l~~h~~~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~   90 (147)
                      +++++|.|.+  |++.|.....|..|++.|.+.++|.|+  .|++.|.....|..|+..+.                +++
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~----------------~~~   65 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHT----------------GVK   65 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHH----------------CCC
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcC----------------CCC
Confidence            4678999997  999999999999999999999999999  79999999999999998887                456


Q ss_pred             CcccccccccCCChHHHHHHHHHHhCCCcccC--CCchhccCChHHHHhHHHhh
Q psy8937          91 ARYCKICGKHYSNSSNLKQHIRLIHLPGILFC--PLCQKCFKNKLYLRRHVISF  142 (147)
Q Consensus        91 ~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C--~~C~~~f~~~~~l~~H~~~~  142 (147)
                      +|.|..|++.|.....|..|++.|.++++|.|  +.|++.|.....|.+|+++|
T Consensus        66 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           66 PFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHHHHTCCCEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             CccCCccCchhCCHHHHHHHHHHhcCCCCeeCCCCCCccccCCHHHHHHHHhcC
Confidence            78899999999999999999999999999999  89999999999999999986

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.95  E-value=6.3e-29  Score=146.07  Aligned_cols=115  Identities=26%  Similarity=0.504  Sum_probs=101.0

Q ss_pred             ccCccccc--ccccccCChHHHHHHHHHhcCCCCcCCCCchhhhcChHHHHHHHhhhcCCCCccCCCCCCCCCCCcCCcc
Q psy8937          16 SLDARYCK--ICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDARY   93 (147)
Q Consensus        16 ~~~~~~C~--~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (147)
                      ++++|.|+  .|++.|.....|..|++.| +.++|.|+.|++.|.....|..|+..+.                ++++|.
T Consensus         2 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h-~~~~~~C~~C~~~f~~~~~l~~H~~~h~----------------~~~~~~   64 (124)
T 1ubd_C            2 EPRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHT----------------GEKPFQ   64 (124)
T ss_dssp             ---CEECCSTTCCCEESSHHHHHHHHGGG-SCCCEECTTTCCEESSHHHHHHHGGGTS----------------CCCCEE
T ss_pred             CCCcccCCCCCCcCccCCHHHHHHHHHHc-CCCCeECCCCCchhCCHHHHHHHHHHcC----------------CCCCee
Confidence            46789999  8999999999999999866 7789999999999999999999998776                457788


Q ss_pred             ccc--ccccCCChHHHHHHHHHHhCCCcccCC--CchhccCChHHHHhHHHhhhccCC
Q psy8937          94 CKI--CGKHYSNSSNLKQHIRLIHLPGILFCP--LCQKCFKNKLYLRRHVISFHENAT  147 (147)
Q Consensus        94 C~~--c~~~~~~~~~l~~H~~~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~~h~~~~  147 (147)
                      |..  |++.|.....|..|++.|.++++|.|+  .|++.|.+...|..|+++|+++++
T Consensus        65 C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~~k~  122 (124)
T 1ubd_C           65 CTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKN  122 (124)
T ss_dssp             CCSTTCCCEESCHHHHHHHHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC----
T ss_pred             CCCCCCcCccCCHHHHHHHHHHhCCCCceECCCCCCCCccCCHHHHHHHHHHHccccc
Confidence            986  999999999999999999999999996  599999999999999999999864

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.95  E-value=5.9e-29  Score=147.44  Aligned_cols=105  Identities=20%  Similarity=0.352  Sum_probs=95.1

Q ss_pred             CccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCchhhhcChHHHHHHHhhhcCCCCccCCCCCCCCCCCcCC
Q psy8937          12 KPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDA   91 (147)
Q Consensus        12 ~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~   91 (147)
                      ..+.|+++|+|++|++.|.....|..|+++|.+.++|.|+.|++.|.....|..|+..|.                ++++
T Consensus        15 ~~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~----------------~~k~   78 (133)
T 2lt7_A           15 LIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHT----------------GERR   78 (133)
T ss_dssp             EEETTEEEEEETTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHH----------------TCCC
T ss_pred             eecCCCcCeECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhccccC----------------CCcc
Confidence            345678999999999999999999999999999999999999999999999999999887                5577


Q ss_pred             cccccccccCCChHHHHHHHHHHhCCC------cccCCCchhccCCh
Q psy8937          92 RYCKICGKHYSNSSNLKQHIRLIHLPG------ILFCPLCQKCFKNK  132 (147)
Q Consensus        92 ~~C~~c~~~~~~~~~l~~H~~~~~~~~------~~~C~~C~~~f~~~  132 (147)
                      |.|..|++.|...+.|..|++.+++++      +|+|.+|++.|...
T Consensus        79 ~~C~~C~k~F~~~~~L~~H~~~hh~~~p~~~~k~~~C~~C~k~~~~~  125 (133)
T 2lt7_A           79 YQCLACGKSFINYQFMSSHIKSVHSQDPSGDSKLYRLHPCRSLQIRQ  125 (133)
T ss_dssp             EEESSSCCEESSHHHHHHHHHHHTCCCTTSSSCCEEECCCCSSCCCC
T ss_pred             ccCCCCCCCcCCHHHHHHHhHHhcCCCCCCCCCCeecCCCCchhhhc
Confidence            889999999999999999999998764      58899999988643

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.95  E-value=2.7e-28  Score=148.51  Aligned_cols=117  Identities=26%  Similarity=0.403  Sum_probs=106.6

Q ss_pred             CccCcccccccccccCChHHHHHHHHHhcCC-CC--------cCCCCchhhhcChHHHHHHHhhhcCCCCccCCCCCCCC
Q psy8937          15 HSLDARYCKICGKHYSNSSNLKQHIRLIHLP-GI--------LFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKP   85 (147)
Q Consensus        15 ~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~-~~--------~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~   85 (147)
                      ..+..|.|..|++.|.....|..|++.+|.. .+        |.|+.|++.|.....|..|++.|.              
T Consensus        21 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~--------------   86 (155)
T 2rpc_A           21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHT--------------   86 (155)
T ss_dssp             TTCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHH--------------
T ss_pred             hhhcccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcC--------------
Confidence            3567899999999999999999999974554 33        799999999999999999999887              


Q ss_pred             CCCcCCccccc--ccccCCChHHHHHHHHHHhCCCcccCCC--chhccCChHHHHhHHHhhhccCC
Q psy8937          86 LHSLDARYCKI--CGKHYSNSSNLKQHIRLIHLPGILFCPL--CQKCFKNKLYLRRHVISFHENAT  147 (147)
Q Consensus        86 ~~~~~~~~C~~--c~~~~~~~~~l~~H~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~h~~~~  147 (147)
                        ++++|.|..  |++.|.....|..|++.|.++++|.|++  |++.|.....|.+|+++|++++|
T Consensus        87 --~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~  150 (155)
T 2rpc_A           87 --GEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKS  150 (155)
T ss_dssp             --CCCSEECSCTTTCCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSCCC
T ss_pred             --CCCcccCCcCCCCCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhcCCCC
Confidence              456788998  9999999999999999999999999997  99999999999999999999875

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.94  E-value=6.6e-27  Score=142.29  Aligned_cols=116  Identities=23%  Similarity=0.360  Sum_probs=102.2

Q ss_pred             ccCccCccccccc-----ccccCChHHHHHHHHHhcCCCCcCCCC--chhhhcChHHHHHHHhhhcCCCCccCCCCCCCC
Q psy8937          13 PLHSLDARYCKIC-----GKHYSNSSNLKQHIRLIHLPGILFCPL--CQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKP   85 (147)
Q Consensus        13 ~~~~~~~~~C~~C-----~~~f~~~~~l~~h~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~   85 (147)
                      .+.+.++|.|++|     ++.|.....|..|++.|++.++|.|++  |++.|.....|..|++.+.              
T Consensus        28 ~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~--------------   93 (155)
T 2gli_A           28 IHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHT--------------   93 (155)
T ss_dssp             SSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCCCCCCCCSTTCCCCCSSHHHHHHHHHHTT--------------
T ss_pred             cCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCCCCCccCCCCCCCCcccCHHHHHHHHHHcC--------------
Confidence            3456778887753     488999999999999888889999985  9999999999999998776              


Q ss_pred             CCCcCCccccc--ccccCCChHHHHHHH-HHHhCCCcccCCC--chhccCChHHHHhHHHhhhc
Q psy8937          86 LHSLDARYCKI--CGKHYSNSSNLKQHI-RLIHLPGILFCPL--CQKCFKNKLYLRRHVISFHE  144 (147)
Q Consensus        86 ~~~~~~~~C~~--c~~~~~~~~~l~~H~-~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~h~  144 (147)
                        ++++|.|..  |++.|.....|..|+ +.|.++++|.|++  |++.|.....|..|+++|||
T Consensus        94 --~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~hhg  155 (155)
T 2gli_A           94 --GEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG  155 (155)
T ss_dssp             --TCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             --CCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCeeCCCCCCccccCCHHHHHHHHHhhcC
Confidence              456788998  999999999999998 7899999999988  99999999999999999986

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.93  E-value=1.2e-26  Score=145.52  Aligned_cols=131  Identities=23%  Similarity=0.276  Sum_probs=102.7

Q ss_pred             cCccCcccc--cccccccCChHHHHHHHHHhcCCCCcCC--CCchhhhcChHHHHHHHhhhcCCCCccCC--CCC-----
Q psy8937          14 LHSLDARYC--KICGKHYSNSSNLKQHIRLIHLPGILFC--PLCQKCFKNKLYLRRHVGTYTHTPSYRSV--PGA-----   82 (147)
Q Consensus        14 ~~~~~~~~C--~~C~~~f~~~~~l~~h~~~~~~~~~~~C--~~C~~~f~~~~~l~~H~~~~~~~~~~~~~--~~~-----   82 (147)
                      ..+.++|.|  +.|++.|.....|..|++.|.+.++|.|  +.|++.|.....|..|+..+.+..++.-.  .-.     
T Consensus         7 ~~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~   86 (190)
T 1tf6_A            7 PVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTT   86 (190)
T ss_dssp             ---CCCCBCSSTTTCCBCSSHHHHHHHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCEESC
T ss_pred             cCCCcceeCCCCCCcchhCCHHHHHHHHHhcCCCCCccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCCCCCCccCC
Confidence            335677888  6788888888888888888888888888  77888888888888888877776655322  000     


Q ss_pred             ---------CCCCCCcCCccc--ccccccCCChHHHHHHHHHHhCCCcccCCC--chhccCChHHHHhHHHhhhc
Q psy8937          83 ---------SKPLHSLDARYC--KICGKHYSNSSNLKQHIRLIHLPGILFCPL--CQKCFKNKLYLRRHVISFHE  144 (147)
Q Consensus        83 ---------~~~~~~~~~~~C--~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~h~  144 (147)
                               .....++++|.|  ..|++.|.....|..|++.|.++++|.|++  |++.|.....|.+|+++|++
T Consensus        87 ~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~~~L~~H~~~H~~  161 (190)
T 1tf6_A           87 KANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG  161 (190)
T ss_dssp             HHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSHHHHHHHHTSSCS
T ss_pred             HHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcCHHHHHHHHHHhCC
Confidence                     011125678889  889999999999999999999999999977  99999999999999998876

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.93  E-value=6.8e-26  Score=142.11  Aligned_cols=104  Identities=18%  Similarity=0.327  Sum_probs=69.0

Q ss_pred             CCCCcCC--CCchhhhcChHHHHHHHhhhcCCCCccC--CCCCC------------CCCCCcCCcccc--cccccCCChH
Q psy8937          44 LPGILFC--PLCQKCFKNKLYLRRHVGTYTHTPSYRS--VPGAS------------KPLHSLDARYCK--ICGKHYSNSS  105 (147)
Q Consensus        44 ~~~~~~C--~~C~~~f~~~~~l~~H~~~~~~~~~~~~--~~~~~------------~~~~~~~~~~C~--~c~~~~~~~~  105 (147)
                      ..++|.|  +.|++.|.....|..|++.+.+..++.-  ..-..            ....++++|.|.  .|++.|....
T Consensus         9 ~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~   88 (190)
T 1tf6_A            9 VYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKA   88 (190)
T ss_dssp             -CCCCBCSSTTTCCBCSSHHHHHHHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCEESCHH
T ss_pred             CCcceeCCCCCCcchhCCHHHHHHHHHhcCCCCCccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCCCCCCccCCHH
Confidence            3578999  6899999999999999999887655432  11111            122344566666  6777777777


Q ss_pred             HHHHHH-HHH-hCCCcccC--CCchhccCChHHHHhHHHhhhccCC
Q psy8937         106 NLKQHI-RLI-HLPGILFC--PLCQKCFKNKLYLRRHVISFHENAT  147 (147)
Q Consensus       106 ~l~~H~-~~~-~~~~~~~C--~~C~~~f~~~~~l~~H~~~~h~~~~  147 (147)
                      .|..|+ ..| .++++|.|  +.|++.|.....|..|+++|++++|
T Consensus        89 ~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~  134 (190)
T 1tf6_A           89 NMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLP  134 (190)
T ss_dssp             HHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCS
T ss_pred             HHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhCCCCC
Confidence            777776 333 24556777  6677777777777777777766543

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.93  E-value=1.3e-26  Score=137.35  Aligned_cols=91  Identities=20%  Similarity=0.337  Sum_probs=84.6

Q ss_pred             HhcCCCCcCCCCchhhhcChHHHHHHHhhhcCCCCccCCCCCCCCCCCcCCcccccccccCCChHHHHHHHHHHhCCCcc
Q psy8937          41 LIHLPGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGIL  120 (147)
Q Consensus        41 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~  120 (147)
                      ++.++++|.|++|++.|.....|..|++.|.                ++++|.|..|++.|...+.|..|+++|.++++|
T Consensus        16 ~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~----------------~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~   79 (133)
T 2lt7_A           16 IVDGRVYYICIVCKRSYVCLTSLRRHFNIHS----------------WEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRY   79 (133)
T ss_dssp             EETTEEEEEETTTCCEESCHHHHHHHHHHHH----------------CCSCEECSSSSCEESSHHHHHHHHHHHHTCCCE
T ss_pred             ecCCCcCeECCCCCCCcCCHHHHHHHHHHcC----------------CCCCeeCCccCeecccccchhhhccccCCCccc
Confidence            3556689999999999999999999999887                557788999999999999999999999999999


Q ss_pred             cCCCchhccCChHHHHhHHHhhhccCC
Q psy8937         121 FCPLCQKCFKNKLYLRRHVISFHENAT  147 (147)
Q Consensus       121 ~C~~C~~~f~~~~~l~~H~~~~h~~~~  147 (147)
                      .|++|++.|.....|..|+++||+++|
T Consensus        80 ~C~~C~k~F~~~~~L~~H~~~hh~~~p  106 (133)
T 2lt7_A           80 QCLACGKSFINYQFMSSHIKSVHSQDP  106 (133)
T ss_dssp             EESSSCCEESSHHHHHHHHHHHTCCCT
T ss_pred             cCCCCCCCcCCHHHHHHHhHHhcCCCC
Confidence            999999999999999999999998754

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.92  E-value=3.1e-25  Score=134.89  Aligned_cols=114  Identities=23%  Similarity=0.345  Sum_probs=101.0

Q ss_pred             CcccccccccccCChHHHHHHHHH---hcCCCCcCCCCc-----hhhhcChHHHHHHHhhhcCCCCccCCCCCCCCCCCc
Q psy8937          18 DARYCKICGKHYSNSSNLKQHIRL---IHLPGILFCPLC-----QKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSL   89 (147)
Q Consensus        18 ~~~~C~~C~~~f~~~~~l~~h~~~---~~~~~~~~C~~C-----~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~   89 (147)
                      -+|.|+.|++.|.....|..|++.   +.+.++|.|++|     ++.|.....|..|+..+.                ++
T Consensus         2 ~~~~C~~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~----------------~~   65 (155)
T 2gli_A            2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT----------------GE   65 (155)
T ss_dssp             CBCCBTTCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHH----------------CC
T ss_pred             CcCCcCCCccccCCHHHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcC----------------CC
Confidence            468999999999999999999984   555688988753     489999999999998887                44


Q ss_pred             CCccccc--ccccCCChHHHHHHHHHHhCCCcccCCC--chhccCChHHHHhHH-HhhhccCC
Q psy8937          90 DARYCKI--CGKHYSNSSNLKQHIRLIHLPGILFCPL--CQKCFKNKLYLRRHV-ISFHENAT  147 (147)
Q Consensus        90 ~~~~C~~--c~~~~~~~~~l~~H~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~-~~~h~~~~  147 (147)
                      ++|.|..  |++.|.....|..|++.|.++++|.|++  |++.|.+...|..|+ ++|.+++|
T Consensus        66 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~  128 (155)
T 2gli_A           66 KPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKP  128 (155)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCC
T ss_pred             CCccCCCCCCCCcccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCC
Confidence            6778985  9999999999999999999999999998  999999999999999 78877754

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.90  E-value=6.6e-23  Score=117.15  Aligned_cols=99  Identities=28%  Similarity=0.454  Sum_probs=80.9

Q ss_pred             CCCCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCchhhhcChHHHHHHHhhhcCCCCccCCCCCCCCCC
Q psy8937           8 PGGSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLH   87 (147)
Q Consensus         8 ~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~   87 (147)
                      .++..+...+++|.|.+|++.|.....|..|++.|++.++|.|+.|++.|.....|..|+..+.                
T Consensus         6 ~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~----------------   69 (106)
T 2ee8_A            6 SGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHS----------------   69 (106)
T ss_dssp             CCCCCCCCCCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSC----------------
T ss_pred             CCCcCCcCCCcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhC----------------
Confidence            3444455567889999999999999999999998888888999999999999988999987665                


Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccC
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFC  122 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C  122 (147)
                      ++++|.|..|++.|.....|..|++.|.++++|.+
T Consensus        70 ~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~  104 (106)
T 2ee8_A           70 KEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA  104 (106)
T ss_dssp             CCCTTSCSSSCCCCSSHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCCeECCCcCCcccCHHHHHHHHHHhCCCCCCcC
Confidence            44667788888888888888888888888877754

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.89  E-value=1.4e-23  Score=117.87  Aligned_cols=86  Identities=28%  Similarity=0.501  Sum_probs=66.3

Q ss_pred             CCCcCCCCchhhhcChHHHHHHHhhhcCCCCccCCCCCCCCCCCcCCcccccccccCCChHHHHHHHHHHhCCCcccCCC
Q psy8937          45 PGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPL  124 (147)
Q Consensus        45 ~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~  124 (147)
                      .++|.|+.|++.|.....|..|++.+.                ++++|.|..|++.|.....|..|++.|.++++|.|++
T Consensus         6 ~~~~~C~~C~~~f~~~~~l~~H~~~h~----------------~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   69 (96)
T 2dmd_A            6 SGPHKCEVCGKCFSRKDKLKTHMRCHT----------------GVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI   69 (96)
T ss_dssp             CCCCCBTTTTBCCCCHHHHHHHGGGCC----------------CCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSS
T ss_pred             CcCeECCCCCCccCCHHHHHHHHHhcC----------------CCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCC
Confidence            456677777777777777777765554                3456678888888888888888888888888888888


Q ss_pred             chhccCChHHHHhHHHhhhccC
Q psy8937         125 CQKCFKNKLYLRRHVISFHENA  146 (147)
Q Consensus       125 C~~~f~~~~~l~~H~~~~h~~~  146 (147)
                      |++.|.....|..|+++|++++
T Consensus        70 C~~~f~~~~~l~~H~~~h~~~~   91 (96)
T 2dmd_A           70 CPYASRNSSQLTVHLRSHTGDS   91 (96)
T ss_dssp             SSCEESSHHHHHHHHTTCCSCC
T ss_pred             CCCccCCHHHHHHHHHHhcCCC
Confidence            8888888888888888888875

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.89  E-value=3.3e-23  Score=118.41  Aligned_cols=88  Identities=22%  Similarity=0.355  Sum_probs=82.0

Q ss_pred             CCCCcCCCCchhhhcChHHHHHHHhhhcCCCCccCCCCCCCCCCCcCCcccccccccCCChHHHHHHHHHHhCCCcccCC
Q psy8937          44 LPGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCP  123 (147)
Q Consensus        44 ~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~  123 (147)
                      ..++|.|+.|++.|.....|..|+..+.                ++++|.|..|++.|.....|..|++.|.++++|.|+
T Consensus        14 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~----------------~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~   77 (106)
T 2ee8_A           14 TKKEFICKFCGRHFTKSYNLLIHERTHT----------------DERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ   77 (106)
T ss_dssp             CCCCCBCSSSCCBCSSHHHHHHHHHHHC----------------CSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCS
T ss_pred             CCcCeECCCCCCccCCHHHHHHHHHHcC----------------CCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECC
Confidence            3478999999999999999999998877                456788999999999999999999999999999999


Q ss_pred             CchhccCChHHHHhHHHhhhccCC
Q psy8937         124 LCQKCFKNKLYLRRHVISFHENAT  147 (147)
Q Consensus       124 ~C~~~f~~~~~l~~H~~~~h~~~~  147 (147)
                      +|++.|.....|..|+++|++++|
T Consensus        78 ~C~~~f~~~~~L~~H~~~H~~~~~  101 (106)
T 2ee8_A           78 ECGKGFCQSRTLAVHKTLHMQTSS  101 (106)
T ss_dssp             SSCCCCSSHHHHHHHHHHTTSCCC
T ss_pred             CcCCcccCHHHHHHHHHHhCCCCC
Confidence            999999999999999999999865

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.89  E-value=2.5e-23  Score=115.55  Aligned_cols=86  Identities=26%  Similarity=0.443  Sum_probs=71.9

Q ss_pred             CCCcCCC--CchhhhcChHHHHHHHhhhcCCCCccCCCCCCCCCCCcCCcccccccccCCChHHHHHHHHHHhCCCcccC
Q psy8937          45 PGILFCP--LCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFC  122 (147)
Q Consensus        45 ~~~~~C~--~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C  122 (147)
                      .++|.|+  .|++.|.....|..|++.+.                ++++|.|..|++.|.....|..|++.|.++++|.|
T Consensus         2 ~k~~~C~~~~C~~~f~~~~~l~~H~~~h~----------------~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C   65 (90)
T 1a1h_A            2 ERPYACPVESCDRRFSQSGSLTRHIRIHT----------------GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFAC   65 (90)
T ss_dssp             -CCEECCSSSCCCEESSHHHHHHHHHHHH----------------CCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEEC
T ss_pred             CCceECCCCCCCCccCCHHHHHHHHHHhC----------------CCCCccCCCCCcccCCHHHHHHHHHHcCCCCCccC
Confidence            3577787  48888888888888887666                44567799999999999999999999999999999


Q ss_pred             CCchhccCChHHHHhHHHhhhccC
Q psy8937         123 PLCQKCFKNKLYLRRHVISFHENA  146 (147)
Q Consensus       123 ~~C~~~f~~~~~l~~H~~~~h~~~  146 (147)
                      ++|++.|.....|..|+++|++++
T Consensus        66 ~~C~~~f~~~~~l~~H~~~H~~~k   89 (90)
T 1a1h_A           66 DICGRKFARSDERKRHTKIHLRQK   89 (90)
T ss_dssp             TTTCCEESSHHHHHHHHGGGGC--
T ss_pred             CCCCchhCCHHHHHHHHHHhcccC
Confidence            999999999999999999999876

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.88  E-value=2.9e-23  Score=113.34  Aligned_cols=82  Identities=24%  Similarity=0.427  Sum_probs=75.2

Q ss_pred             CcCCCCchhhhcChHHHHHHHhhhcCCCCccCCCCCCCCCCCcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCch
Q psy8937          47 ILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQ  126 (147)
Q Consensus        47 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C~  126 (147)
                      +|.|+.|++.|.....|..|+..+.                ++++|.|..|++.|.....|..|++.|.++++|.|++|+
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~----------------~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~   64 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHS----------------DTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCG   64 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHH----------------TCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTS
T ss_pred             CccCCCCcccccCchhHHHHHHHcC----------------CCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcc
Confidence            5789999999999999999998776                446788999999999999999999999999999999999


Q ss_pred             hccCChHHHHhHHHhhhc
Q psy8937         127 KCFKNKLYLRRHVISFHE  144 (147)
Q Consensus       127 ~~f~~~~~l~~H~~~~h~  144 (147)
                      +.|.....|..|+++|+|
T Consensus        65 ~~f~~~~~l~~H~~~H~g   82 (82)
T 2kmk_A           65 KAFSQSSNLITHSRKHTG   82 (82)
T ss_dssp             CEESSHHHHHHHHHHHC-
T ss_pred             hhhCChHHHHHHHHhhCC
Confidence            999999999999999976

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.87  E-value=9e-23  Score=104.30  Aligned_cols=58  Identities=29%  Similarity=0.599  Sum_probs=55.7

Q ss_pred             cCCcccccccccCCChHHHHHHHHHHhCCCcccCCCchhccCChHHHHhHHHhhhccC
Q psy8937          89 LDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVISFHENA  146 (147)
Q Consensus        89 ~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  146 (147)
                      |+||.|..|++.|...+.|..|+++|.++++|.|++||+.|.....|.+|+++|.|+.
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccCCCC
Confidence            6899999999999999999999999999999999999999999999999999999874

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.87  E-value=4.4e-22  Score=113.92  Aligned_cols=97  Identities=18%  Similarity=0.343  Sum_probs=80.4

Q ss_pred             CCCCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCchhhhcChHHHHHHHhhhcCCCCccCCCCCCCCCC
Q psy8937           8 PGGSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLH   87 (147)
Q Consensus         8 ~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~   87 (147)
                      ..+...+.++++|.|.+|++.|.....|..|++.|  .++|.|+.|++.|.....|..|+. |.                
T Consensus         5 ss~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H--~~~~~C~~C~~~f~~~~~l~~H~~-H~----------------   65 (107)
T 1wjp_A            5 SSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHES-KC----------------   65 (107)
T ss_dssp             CCCCCCCCCCCCCBCTTTCCBCSSHHHHHHHHHHH--HHSBCCTTTCCCBSSHHHHHHHHH-HC----------------
T ss_pred             cccCcccCCCcCeECCCCCCccCCHHHHHHHHHHC--CCCccCCCCCCccCCHHHHHHHHH-cC----------------
Confidence            45566777889999999999999999999999876  367889999999988888888884 55                


Q ss_pred             CcCCcccccccccCCChHHHHHHHH-HHhCCCcccCC
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIR-LIHLPGILFCP  123 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~-~~~~~~~~~C~  123 (147)
                      ++++|.|..|++.|.....|..|++ .|.++++|.|+
T Consensus        66 ~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~  102 (107)
T 1wjp_A           66 EYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNMAPTS  102 (107)
T ss_dssp             STGGGEEGGGTEECSSHHHHHHHHHHTSCCCCCCCCC
T ss_pred             CCCCccCccccchhCCHHHHHHHHHHHcCCCCCCCCC
Confidence            5567788888888888888888886 77788888775

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.86  E-value=7.4e-22  Score=110.61  Aligned_cols=82  Identities=23%  Similarity=0.463  Sum_probs=51.5

Q ss_pred             CCcCCCCchhhhcChHHHHHHHhhhcCCCCccCCCCCCCCCCCcCCcccccccccCCChHHHHHHHHHHhCC--CcccCC
Q psy8937          46 GILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLP--GILFCP  123 (147)
Q Consensus        46 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~--~~~~C~  123 (147)
                      ++|.|+.|++.|.....|..|++.+.                ++++|.|..|++.|.....|..|++.|.++  ++|.|+
T Consensus         6 ~~~~C~~C~~~f~~~~~l~~H~~~h~----------------~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~   69 (95)
T 2yt9_A            6 SGVACEICGKIFRDVYHLNRHKLSHS----------------GEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ   69 (95)
T ss_dssp             SCEECSSSCCEESSSHHHHHHHHHSC----------------SSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCS
T ss_pred             CCeECCCCCCccCChHHHHHHHHhcC----------------CCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECC
Confidence            44555555555555555555554443                334455666666666666666666666665  778888


Q ss_pred             CchhccCChHHHHhHHHhhh
Q psy8937         124 LCQKCFKNKLYLRRHVISFH  143 (147)
Q Consensus       124 ~C~~~f~~~~~l~~H~~~~h  143 (147)
                      +|++.|.....|..|++..|
T Consensus        70 ~C~~~f~~~~~L~~H~~~~H   89 (95)
T 2yt9_A           70 SCGKGFSRPDHLNGHIKQVH   89 (95)
T ss_dssp             SSCCCBSSHHHHHHHHHHTS
T ss_pred             CccchhCCHHHHHHHHHHhc
Confidence            88888888888888876433

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.86  E-value=2.7e-22  Score=115.34  Aligned_cols=57  Identities=25%  Similarity=0.318  Sum_probs=35.4

Q ss_pred             ccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCchhhhcChHHHHHHHhhh
Q psy8937          13 PLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTY   70 (147)
Q Consensus        13 ~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~   70 (147)
                      .++++++|.| .|++.|.....|..|++.|+..++|.|+.|++.|.....|..|++.+
T Consensus         4 ~h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h   60 (110)
T 2csh_A            4 GSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   60 (110)
T ss_dssp             CCCCCCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CCCCCCCEec-cCCCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHc
Confidence            4456666777 67777777777777766665555555555555555555555555433

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.86  E-value=4.1e-24  Score=123.90  Aligned_cols=52  Identities=17%  Similarity=0.195  Sum_probs=32.4

Q ss_pred             cccccccC--CChHHHHHHHHHHhCCCcccCCCchhccCChHHHHhHHHhhhcc
Q psy8937          94 CKICGKHY--SNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVISFHEN  145 (147)
Q Consensus        94 C~~c~~~~--~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~  145 (147)
                      |..|++.|  .....|..|++.|.++++|.|++|++.|.....|.+|+++||..
T Consensus        53 C~~C~~~f~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~hh~~  106 (115)
T 2dmi_A           53 DNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHY  106 (115)
T ss_dssp             CCCCCSCCSSCCCCCCCCCCCSCCCCSSCBCSSSCCBCSSHHHHHHHHHHTTTT
T ss_pred             CCCCCcccccccHHHHHHHhhccCCCcceECCCCCCccCCHHHHHHHHHHhCCc
Confidence            56666555  55556666666666666666666666666666666666665543

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.85  E-value=6.7e-22  Score=110.99  Aligned_cols=89  Identities=26%  Similarity=0.374  Sum_probs=82.2

Q ss_pred             CccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCchhhhcChHHHHHHHhhhcCCCCccCCCCCCCCCCCcCCccc
Q psy8937          15 HSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDARYC   94 (147)
Q Consensus        15 ~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~C   94 (147)
                      .++++|.|.+|++.|.....|..|++.|+..++|.|+.|++.|.....|..|+..+.                ++++|.|
T Consensus         4 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~----------------~~~~~~C   67 (96)
T 2dmd_A            4 GSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHS----------------DERPFKC   67 (96)
T ss_dssp             CCCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSC----------------CCCCEEC
T ss_pred             CCCcCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhC----------------CCCCccC
Confidence            467899999999999999999999998888899999999999999999999998776                5577889


Q ss_pred             ccccccCCChHHHHHHHHHHhCCCc
Q psy8937          95 KICGKHYSNSSNLKQHIRLIHLPGI  119 (147)
Q Consensus        95 ~~c~~~~~~~~~l~~H~~~~~~~~~  119 (147)
                      ..|++.|.....|..|++.|++++.
T Consensus        68 ~~C~~~f~~~~~l~~H~~~h~~~~~   92 (96)
T 2dmd_A           68 QICPYASRNSSQLTVHLRSHTGDSG   92 (96)
T ss_dssp             SSSSCEESSHHHHHHHHTTCCSCCC
T ss_pred             CCCCCccCCHHHHHHHHHHhcCCCC
Confidence            9999999999999999999998764

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.85  E-value=2.7e-21  Score=112.48  Aligned_cols=88  Identities=23%  Similarity=0.351  Sum_probs=81.4

Q ss_pred             CCCCcCCCC--chhhhcChHHHHHHHhhhcCCCCccCCCCCCCCCCCcCCcccc--cccccCCChHHHHHHHHHHhCCCc
Q psy8937          44 LPGILFCPL--CQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDARYCK--ICGKHYSNSSNLKQHIRLIHLPGI  119 (147)
Q Consensus        44 ~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~C~--~c~~~~~~~~~l~~H~~~~~~~~~  119 (147)
                      +.++|.|++  |++.|.....|..|+..+.                ++++|.|.  .|++.|.....|..|++.|.++++
T Consensus         3 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~----------------~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~   66 (119)
T 2jp9_A            3 EKRPFMCAYPGCNKRYFKLSHLQMHSRKHT----------------GEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKP   66 (119)
T ss_dssp             SSCCBCCCSTTSCCCBSCHHHHHHHHHHHH----------------TTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCC
T ss_pred             CCeeeeCCCCCCcchhCCHHHHHHHHHhhC----------------CCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCC
Confidence            457899997  9999999999999998877                44677899  799999999999999999999999


Q ss_pred             ccCCCchhccCChHHHHhHHHhhhccCC
Q psy8937         120 LFCPLCQKCFKNKLYLRRHVISFHENAT  147 (147)
Q Consensus       120 ~~C~~C~~~f~~~~~l~~H~~~~h~~~~  147 (147)
                      |.|++|++.|.....|..|+++|+++++
T Consensus        67 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~   94 (119)
T 2jp9_A           67 FQCKTCQRKFSRSDHLKTHTRTHTGEKP   94 (119)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHHHTCCC
T ss_pred             ccCCccCchhCCHHHHHHHHHHhcCCCC
Confidence            9999999999999999999999998864

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.85  E-value=1.6e-21  Score=111.60  Aligned_cols=89  Identities=19%  Similarity=0.329  Sum_probs=79.2

Q ss_pred             HHhcCCCCcCCCCchhhhcChHHHHHHHhhhcCCCCccCCCCCCCCCCCcCCcccccccccCCChHHHHHHHHHHhCCCc
Q psy8937          40 RLIHLPGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGI  119 (147)
Q Consensus        40 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~  119 (147)
                      +.+.+.++|.|+.|++.|.....|..|++.|.                  ++|.|..|++.|.....|..|+. |.++++
T Consensus         9 ~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~------------------~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~   69 (107)
T 1wjp_A            9 SPVENKEVYQCRLCNAKLSSLLEQGSHERLCR------------------NAAVCPYCSLRFFSPELKQEHES-KCEYKK   69 (107)
T ss_dssp             CCCCCCCCCBCTTTCCBCSSHHHHHHHHHHHH------------------HSBCCTTTCCCBSSHHHHHHHHH-HCSTGG
T ss_pred             cccCCCcCeECCCCCCccCCHHHHHHHHHHCC------------------CCccCCCCCCccCCHHHHHHHHH-cCCCCC
Confidence            34566789999999999999999999998753                  35789999999999999999996 999999


Q ss_pred             ccCCCchhccCChHHHHhHHH-hhhccCC
Q psy8937         120 LFCPLCQKCFKNKLYLRRHVI-SFHENAT  147 (147)
Q Consensus       120 ~~C~~C~~~f~~~~~l~~H~~-~~h~~~~  147 (147)
                      |.|++|++.|.....|.+|++ +|.++++
T Consensus        70 ~~C~~C~~~f~~~~~L~~H~~~~H~~~~~   98 (107)
T 1wjp_A           70 LTCLECMRTFKSSFSIWRHQVEVHNQNNM   98 (107)
T ss_dssp             GEEGGGTEECSSHHHHHHHHHHTSCCCCC
T ss_pred             ccCccccchhCCHHHHHHHHHHHcCCCCC
Confidence            999999999999999999998 7666653

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.84  E-value=1.6e-21  Score=108.21  Aligned_cols=86  Identities=26%  Similarity=0.494  Sum_probs=78.1

Q ss_pred             cCccccc--ccccccCChHHHHHHHHHhcCCCCcCCCCchhhhcChHHHHHHHhhhcCCCCccCCCCCCCCCCCcCCccc
Q psy8937          17 LDARYCK--ICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDARYC   94 (147)
Q Consensus        17 ~~~~~C~--~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~C   94 (147)
                      +++|.|+  .|++.|.....|..|++.|.+.++|.|+.|++.|.....|..|+..+.                ++++|.|
T Consensus         2 ~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~----------------~~~~~~C   65 (90)
T 1a1h_A            2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT----------------GEKPFAC   65 (90)
T ss_dssp             -CCEECCSSSCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHH----------------CCCCEEC
T ss_pred             CCceECCCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcC----------------CCCCccC
Confidence            5789998  699999999999999999999999999999999999999999998887                4567889


Q ss_pred             ccccccCCChHHHHHHHHHHhCCC
Q psy8937          95 KICGKHYSNSSNLKQHIRLIHLPG  118 (147)
Q Consensus        95 ~~c~~~~~~~~~l~~H~~~~~~~~  118 (147)
                      ..|++.|...+.|..|+++|.+++
T Consensus        66 ~~C~~~f~~~~~l~~H~~~H~~~k   89 (90)
T 1a1h_A           66 DICGRKFARSDERKRHTKIHLRQK   89 (90)
T ss_dssp             TTTCCEESSHHHHHHHHGGGGC--
T ss_pred             CCCCchhCCHHHHHHHHHHhcccC
Confidence            999999999999999999998875

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.84  E-value=3.3e-21  Score=105.07  Aligned_cols=82  Identities=34%  Similarity=0.548  Sum_probs=76.1

Q ss_pred             cccccccccccCChHHHHHHHHHhcCCCCcCCCCchhhhcChHHHHHHHhhhcCCCCccCCCCCCCCCCCcCCccccccc
Q psy8937          19 ARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDARYCKICG   98 (147)
Q Consensus        19 ~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~   98 (147)
                      +|.|.+|++.|.....|..|++.+.+.++|.|+.|++.|.....|..|+..+.                ++++|.|..|+
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~----------------~~~~~~C~~C~   64 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHT----------------GEKPHKCQVCG   64 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHH----------------TCCCEECTTTS
T ss_pred             CccCCCCcccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhc----------------CCCCCcCCCcc
Confidence            58999999999999999999999999999999999999999999999998887                45678899999


Q ss_pred             ccCCChHHHHHHHHHHhC
Q psy8937          99 KHYSNSSNLKQHIRLIHL  116 (147)
Q Consensus        99 ~~~~~~~~l~~H~~~~~~  116 (147)
                      +.|...+.|..|++.|.+
T Consensus        65 ~~f~~~~~l~~H~~~H~g   82 (82)
T 2kmk_A           65 KAFSQSSNLITHSRKHTG   82 (82)
T ss_dssp             CEESSHHHHHHHHHHHC-
T ss_pred             hhhCChHHHHHHHHhhCC
Confidence            999999999999998864

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.84  E-value=1.1e-20  Score=110.69  Aligned_cols=88  Identities=30%  Similarity=0.520  Sum_probs=80.5

Q ss_pred             CCCCcCCCCchhhhcChHHHHHHHhhhcCCCCccCCCCCCCCCCCcCCcccccccccCCChHHHHHHHHH---HhCCCcc
Q psy8937          44 LPGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDARYCKICGKHYSNSSNLKQHIRL---IHLPGIL  120 (147)
Q Consensus        44 ~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~~~~~~~l~~H~~~---~~~~~~~  120 (147)
                      +.++|.|+.|++.|.....|..|+..+.                ++++|.|..|++.|.....|..|+..   +.++++|
T Consensus         4 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~----------------~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~   67 (124)
T 2dlq_A            4 GSSGVECPTCHKKFLSKYYLKVHNRKHT----------------GEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVF   67 (124)
T ss_dssp             CCSSCCCTTTCCCCSSHHHHHHHHHHHS----------------SCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCE
T ss_pred             CCCCCCCCCCCCcCCCHHHHHHHHHhCC----------------CCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCe
Confidence            4578999999999999999999998877                45678899999999999999999996   4678899


Q ss_pred             cCCCchhccCChHHHHhHHHhhhccCC
Q psy8937         121 FCPLCQKCFKNKLYLRRHVISFHENAT  147 (147)
Q Consensus       121 ~C~~C~~~f~~~~~l~~H~~~~h~~~~  147 (147)
                      .|++|++.|.....|..|+++|++++|
T Consensus        68 ~C~~C~~~f~~~~~l~~H~~~h~~~~~   94 (124)
T 2dlq_A           68 TCSVCQETFRRRMELRLHMVSHTGEMP   94 (124)
T ss_dssp             ECSSSCCEESSHHHHHHHHHHHSSSCS
T ss_pred             ECCCCCCccCCHHHHHHHHHHcCCCCC
Confidence            999999999999999999999998864

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.84  E-value=6.3e-21  Score=109.56  Aligned_cols=87  Identities=25%  Similarity=0.416  Sum_probs=80.6

Q ss_pred             hcCCCCcCCCCchhhhcChHHHHHHHhhhcCCCCccCCCCCCCCCCCcCCcccccccccCCChHHHHHHHHHHhCCCccc
Q psy8937          42 IHLPGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILF  121 (147)
Q Consensus        42 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~  121 (147)
                      |.+.++|.| .|++.|.....|..|+..+.                ++++|.|..|++.|.....|..|++.|.++++|.
T Consensus         5 h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~----------------~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~   67 (110)
T 2csh_A            5 SSGDKLYPC-QCGKSFTHKSQRDRHMSMHL----------------GLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYE   67 (110)
T ss_dssp             CCCCCCEEC-TTSCEESSHHHHHHHHHHHS----------------CCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEE
T ss_pred             CCCCCCEec-cCCCccCCHHHHHHHHHHcC----------------CCcCccCCCCCcccCCHHHHHHHHHHcCCCCCee
Confidence            456689999 99999999999999998877                4567889999999999999999999999999999


Q ss_pred             CCCchhccCChHHHHhHHHhhhcc
Q psy8937         122 CPLCQKCFKNKLYLRRHVISFHEN  145 (147)
Q Consensus       122 C~~C~~~f~~~~~l~~H~~~~h~~  145 (147)
                      |++|++.|.....|.+|+++|+..
T Consensus        68 C~~C~~~f~~~~~l~~H~~~~~~~   91 (110)
T 2csh_A           68 CNICAKRFMWRDSFHRHVTSCTKS   91 (110)
T ss_dssp             CSSSCCEESCHHHHHHHHHHHHHH
T ss_pred             CCCCcchhcCHHHHHHHHHHcccc
Confidence            999999999999999999999864

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.83  E-value=1.4e-20  Score=106.33  Aligned_cols=54  Identities=20%  Similarity=0.380  Sum_probs=37.4

Q ss_pred             Ccccc--cccccCCChHHHHHHHHHHhCCCcccCCCchhccCChHHHHhHHHhhhc
Q psy8937          91 ARYCK--ICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVISFHE  144 (147)
Q Consensus        91 ~~~C~--~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  144 (147)
                      +|.|.  .|++.|.....|..|++.|.++++|.|++|++.|.....|..|+++|++
T Consensus        45 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~  100 (100)
T 2ebt_A           45 PYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQN  100 (100)
T ss_dssp             CEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCBCSSHHHHHHHHHHHCC
T ss_pred             CeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCccCCHHHHHHHHHHhCC
Confidence            34453  3666666666666666667777777777777777777777777777754

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.83  E-value=2e-20  Score=104.71  Aligned_cols=89  Identities=27%  Similarity=0.468  Sum_probs=79.8

Q ss_pred             CccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCchhhhcChHHHHHHHhhhcCCCCccCCCCCCCCCCCcCCccc
Q psy8937          15 HSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDARYC   94 (147)
Q Consensus        15 ~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~C   94 (147)
                      ++.++|.|.+|++.|.....|..|++.|+..++|.|+.|++.|.....|..|++.+.+.              .+++|.|
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~--------------~~~~~~C   68 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS--------------VGKPYIC   68 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCC--------------CCSSBCC
T ss_pred             CCCCCeECCCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCC--------------CCCceEC
Confidence            46789999999999999999999999888889999999999999999999999888754              3478899


Q ss_pred             ccccccCCChHHHHHHHH-HHhCC
Q psy8937          95 KICGKHYSNSSNLKQHIR-LIHLP  117 (147)
Q Consensus        95 ~~c~~~~~~~~~l~~H~~-~~~~~  117 (147)
                      ..|++.|.....|..|++ .|.++
T Consensus        69 ~~C~~~f~~~~~L~~H~~~~H~~~   92 (95)
T 2yt9_A           69 QSCGKGFSRPDHLNGHIKQVHSGP   92 (95)
T ss_dssp             SSSCCCBSSHHHHHHHHHHTSCCC
T ss_pred             CCccchhCCHHHHHHHHHHhcCCC
Confidence            999999999999999996 55543

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.83  E-value=4.2e-21  Score=111.15  Aligned_cols=105  Identities=17%  Similarity=0.111  Sum_probs=89.3

Q ss_pred             CccCCCCCCCccCccCcccccccccccCChHHHHHHHHH--hcCCCC-cCCCCchhhh--cChHHHHHHHhhhcCCCCcc
Q psy8937           3 SYRSVPGGSKPLHSLDARYCKICGKHYSNSSNLKQHIRL--IHLPGI-LFCPLCQKCF--KNKLYLRRHVGTYTHTPSYR   77 (147)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~--~~~~~~-~~C~~C~~~f--~~~~~l~~H~~~~~~~~~~~   77 (147)
                      +...+..+...+.++++|.|.+|++.|.....|..|++.  +...++ +.|+.|++.|  .....|..|++.+.      
T Consensus         3 s~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~------   76 (115)
T 2dmi_A            3 SGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKED------   76 (115)
T ss_dssp             CCCCCCCCCCCCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCC------
T ss_pred             cchhhhhheeeeCCCCCEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccC------
Confidence            345677788888999999999999999999999999997  544554 4599999999  88899999987665      


Q ss_pred             CCCCCCCCCCCcCCcccccccccCCChHHHHHHHHHHhCCCcccCC
Q psy8937          78 SVPGASKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCP  123 (147)
Q Consensus        78 ~~~~~~~~~~~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~  123 (147)
                                ++++|.|..|++.|.....|..|++.|+......++
T Consensus        77 ----------~~~~~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~~~  112 (115)
T 2dmi_A           77 ----------AQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSGP  112 (115)
T ss_dssp             ----------CCSSCBCSSSCCBCSSHHHHHHHHHHTTTTTCSCCC
T ss_pred             ----------CCcceECCCCCCccCCHHHHHHHHHHhCCcccCCCC
Confidence                      567889999999999999999999998877666554

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.82  E-value=1.9e-20  Score=103.58  Aligned_cols=81  Identities=23%  Similarity=0.406  Sum_probs=71.6

Q ss_pred             CCcCCCC--chhhhcChHHHHHHHhhhcCCCCccCCCCCCCCCCCcCCcccc--cccccCCChHHHHHHHHHHhCCCccc
Q psy8937          46 GILFCPL--CQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDARYCK--ICGKHYSNSSNLKQHIRLIHLPGILF  121 (147)
Q Consensus        46 ~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~C~--~c~~~~~~~~~l~~H~~~~~~~~~~~  121 (147)
                      .+|.|+.  |++.|.....|..|+..+.                ++++|.|.  .|++.|.....|..|++.|.++++|.
T Consensus         4 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~----------------~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~   67 (89)
T 2wbs_A            4 ATHTCDYAGCGKTYTKSSHLKAHLRTHT----------------GEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQ   67 (89)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHTTSC----------------SSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEE
T ss_pred             CCeeCCCCCCCCcCCCHHHHHHHHHhcC----------------CCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCcc
Confidence            5678888  8888888888988887655                45667897  59999999999999999999999999


Q ss_pred             CCCchhccCChHHHHhHHHhh
Q psy8937         122 CPLCQKCFKNKLYLRRHVISF  142 (147)
Q Consensus       122 C~~C~~~f~~~~~l~~H~~~~  142 (147)
                      |++|++.|.....|..|+++|
T Consensus        68 C~~C~~~f~~~~~l~~H~~~H   88 (89)
T 2wbs_A           68 CQKCDRAFSRSDHLALHMKRH   88 (89)
T ss_dssp             CSSSSCEESSHHHHHHHGGGG
T ss_pred             CCCCCcccCCHHHHHHHHHhh
Confidence            999999999999999999987

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.82  E-value=1.3e-20  Score=114.47  Aligned_cols=88  Identities=26%  Similarity=0.403  Sum_probs=82.9

Q ss_pred             ccccccccccCChHHHHHHHHHhcCCCCcCCCC--chhhhcChHHHHHHHhhhcCCCCccCCCCCCCCCCCcCCccccc-
Q psy8937          20 RYCKICGKHYSNSSNLKQHIRLIHLPGILFCPL--CQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDARYCKI-   96 (147)
Q Consensus        20 ~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~-   96 (147)
                      |.|.+|++.|.....|..|++.|++.++|.|..  |++.|.....|..|++.|.                ++++|.|.. 
T Consensus        63 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~----------------~~~~~~C~~~  126 (155)
T 2rpc_A           63 EECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHT----------------GEKPFKCEFE  126 (155)
T ss_dssp             TTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSCTTTCCEESCHHHHHHHHTTTC----------------SSCSBCCSST
T ss_pred             cCCCCcccccCCHHHHHHHHHhcCCCCcccCCcCCCCCccCCHHHHHHHHHhhC----------------CCCCccCCCC
Confidence            899999999999999999999999999999998  9999999999999998776                557788997 


Q ss_pred             -ccccCCChHHHHHHHHHHhCCCcccCC
Q psy8937          97 -CGKHYSNSSNLKQHIRLIHLPGILFCP  123 (147)
Q Consensus        97 -c~~~~~~~~~l~~H~~~~~~~~~~~C~  123 (147)
                       |++.|.....|..|+++|.++++|.|+
T Consensus       127 ~C~k~f~~~~~L~~H~~~H~~~k~~~c~  154 (155)
T 2rpc_A          127 GCDRRFANSSDRKKHMHVHTSDKSGPSS  154 (155)
T ss_dssp             TCCCCBSSHHHHHHSSTTTTSCCCSCSC
T ss_pred             CCCCccCCHHHHHHHHHHhcCCCCCCCC
Confidence             999999999999999999999999996

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.80  E-value=3.2e-19  Score=100.62  Aligned_cols=87  Identities=29%  Similarity=0.466  Sum_probs=78.8

Q ss_pred             cCccCcccccc--cccccCChHHHHHHHHHhcCCCCcCCC--CchhhhcChHHHHHHHhhhcCCCCccCCCCCCCCCCCc
Q psy8937          14 LHSLDARYCKI--CGKHYSNSSNLKQHIRLIHLPGILFCP--LCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSL   89 (147)
Q Consensus        14 ~~~~~~~~C~~--C~~~f~~~~~l~~h~~~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~   89 (147)
                      ....+.|.|..  |++.|.....|..|++.|++.++|.|+  .|++.|.....|..|++.+.                ++
T Consensus        10 ~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~----------------~~   73 (100)
T 2ebt_A           10 LEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHT----------------GA   73 (100)
T ss_dssp             CCSCCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHT----------------SC
T ss_pred             cccCcceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhC----------------CC
Confidence            34567899997  999999999999999999889999996  69999999999999998877                55


Q ss_pred             CCcccccccccCCChHHHHHHHHHHhC
Q psy8937          90 DARYCKICGKHYSNSSNLKQHIRLIHL  116 (147)
Q Consensus        90 ~~~~C~~c~~~~~~~~~l~~H~~~~~~  116 (147)
                      ++|.|..|++.|.....|..|+++|.+
T Consensus        74 ~~~~C~~C~~~f~~~~~l~~H~~~H~~  100 (100)
T 2ebt_A           74 KPFQCGVCNRSFSRSDHLALHMKRHQN  100 (100)
T ss_dssp             CSCBCSSSCCBCSSHHHHHHHHHHHCC
T ss_pred             CCeECCCCcCccCCHHHHHHHHHHhCC
Confidence            778899999999999999999999863

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.80  E-value=7.1e-21  Score=105.20  Aligned_cols=83  Identities=20%  Similarity=0.385  Sum_probs=74.2

Q ss_pred             CCcCCCCchhhhcChHHHHHHHhhhcCCCCccCCCCCCCCCCCcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCc
Q psy8937          46 GILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC  125 (147)
Q Consensus        46 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C  125 (147)
                      ++|.|+.|++.|.....|..|+..|.                ++++|.|..|++.|.....|..|++.+++ .+|.|+.|
T Consensus         2 k~~~C~~C~k~f~~~~~L~~H~~~H~----------------~~~~~~C~~C~k~f~~~~~L~~H~~~h~~-~~~~c~~C   64 (88)
T 1llm_C            2 KPFQCRICMRNFSRSDHLTTHIRTHT----------------GEKPFACDICGRKFARSDERKRHRDIQHI-LPILEDKV   64 (88)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHHHH----------------CCCCEECTTTCCEESSHHHHHHHHHHHTH-HHHHHHHH
T ss_pred             CCCcCCCCCCccCCHHHHHHHHHHcC----------------CCCCccCCCCCCccCCHHHHHHHHHHhCC-CcchHHHH
Confidence            57889999999999999999998777                45678899999999999999999999885 78999999


Q ss_pred             hhccCChHHHHhHHHhhhcc
Q psy8937         126 QKCFKNKLYLRRHVISFHEN  145 (147)
Q Consensus       126 ~~~f~~~~~l~~H~~~~h~~  145 (147)
                      ++.|.....|..|++.+|+.
T Consensus        65 ~~~f~~~~~L~~H~~~~h~~   84 (88)
T 1llm_C           65 EELLSKNYHLENEVARLKKL   84 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHH
Confidence            99999999999999998763

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.79  E-value=5.7e-20  Score=107.63  Aligned_cols=90  Identities=30%  Similarity=0.422  Sum_probs=77.9

Q ss_pred             ccCcccccccccccCChHHHHHHHHHhcCCCCcCCCC--chhhhcChHHHHHHHhhhcCCCCccCCCCCCCCCCCcCCcc
Q psy8937          16 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPL--CQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDARY   93 (147)
Q Consensus        16 ~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (147)
                      +.++|.|.+|++.|.....|..|++.|++.++|.|+.  |++.|.....|..|++.+.                ++++|.
T Consensus        31 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~----------------~~~~~~   94 (124)
T 1ubd_C           31 GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHT----------------GDRPYV   94 (124)
T ss_dssp             SCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESCHHHHHHHHHHHH----------------CCCCCC
T ss_pred             CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCCHHHHHHHHHHhC----------------CCCceE
Confidence            6788999999999999999999999888889999986  9999999999999998887                456788


Q ss_pred             cc--cccccCCChHHHHHHHHHHhCCCccc
Q psy8937          94 CK--ICGKHYSNSSNLKQHIRLIHLPGILF  121 (147)
Q Consensus        94 C~--~c~~~~~~~~~l~~H~~~~~~~~~~~  121 (147)
                      |+  .|++.|...+.|..|+++|.++++++
T Consensus        95 C~~~~C~~~f~~~~~L~~H~~~H~~~k~~q  124 (124)
T 1ubd_C           95 CPFDGCNKKFAQSTNLKSHILTHAKAKNNQ  124 (124)
T ss_dssp             CCSTTCCCCCSSTTTTHHHHHHHC------
T ss_pred             CCCCCCCCccCCHHHHHHHHHHHcccccCC
Confidence            96  59999999999999999999988753

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.79  E-value=1.4e-20  Score=111.02  Aligned_cols=114  Identities=23%  Similarity=0.289  Sum_probs=87.2

Q ss_pred             CCccCccCcccccccccccCChHHHHHHHHHh---cCCCCcCCCCchhhhc------ChHHHHHHHhhhcCCCCccCCCC
Q psy8937          11 SKPLHSLDARYCKICGKHYSNSSNLKQHIRLI---HLPGILFCPLCQKCFK------NKLYLRRHVGTYTHTPSYRSVPG   81 (147)
Q Consensus        11 ~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~---~~~~~~~C~~C~~~f~------~~~~l~~H~~~~~~~~~~~~~~~   81 (147)
                      ...+++.++|.|...+.....  .+..+.+.+   ...+.+.|++|.+.|.      ....|..|+ .+.          
T Consensus         4 ~~~~~~~k~~~~~~k~~~~~~--s~ee~~~~~~l~~~~~~~~c~~~~~~~~~~~~~~~~~~l~~h~-~h~----------   70 (129)
T 2wbt_A            4 SDVDSGSKKYLSNHKGIFIHV--TLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLL-ASK----------   70 (129)
T ss_dssp             -CCCTTCCGGGGCSSCEEEEC--CHHHHHHHTTSCHHHHHHHHHHHHHHHHCGGGTTTHHHHHHHH-HHH----------
T ss_pred             chhcccccccccccCCeeeee--cHHhhhccccCChhhCcccchhhhcccCCCcccCCHHHHHHHH-HhC----------
Confidence            455668889988876654322  222332222   2235677888888876      556667776 455          


Q ss_pred             CCCCCCCcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCchhccCChHHHHhHHHhhhcc
Q psy8937          82 ASKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVISFHEN  145 (147)
Q Consensus        82 ~~~~~~~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~  145 (147)
                            ++++|.|..|++.|.....|..|++.|  +++|.|++|++.|.....|.+|+++||+.
T Consensus        71 ------~~~~~~C~~C~k~f~~~~~l~~H~~~H--~~~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           71 ------AISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             ------HHCSEECTTTCCEESSHHHHHHHHHHT--CCCCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             ------CCCCeECCCCCcccCCHhHHHHHHHHC--CCCCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence                  668889999999999999999999998  88999999999999999999999999985

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.78  E-value=1.1e-19  Score=92.74  Aligned_cols=58  Identities=31%  Similarity=0.600  Sum_probs=55.1

Q ss_pred             ccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCchhhhcChHHHHHHHhhhcCC
Q psy8937          16 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTYTHT   73 (147)
Q Consensus        16 ~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~   73 (147)
                      +++||.|++||+.|...+.|..|+++|.+.++|.|+.|++.|....+|..|+++|+++
T Consensus         1 SEKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htge   58 (60)
T 4gzn_C            1 SERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK   58 (60)
T ss_dssp             CCCCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGSCC
T ss_pred             CCCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccCCC
Confidence            4689999999999999999999999999999999999999999999999999988865

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.78  E-value=1.8e-19  Score=98.67  Aligned_cols=78  Identities=28%  Similarity=0.385  Sum_probs=71.4

Q ss_pred             CcCC--CCchhhhcChHHHHHHHhhhcCCCCccCCCCCCCCCCCcCCccccc--ccccCCChHHHHHHHHHHhCCCcccC
Q psy8937          47 ILFC--PLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDARYCKI--CGKHYSNSSNLKQHIRLIHLPGILFC  122 (147)
Q Consensus        47 ~~~C--~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~--c~~~~~~~~~l~~H~~~~~~~~~~~C  122 (147)
                      ||.|  +.|++.|.....|..|++.+.                ++++|.|..  |++.|.....|..|++.|.+   |.|
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~----------------~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~C   61 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHT----------------QQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPC   61 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHH----------------TTCCEECCSTTCCCEESSHHHHHHHHHHHHS---EEC
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhC----------------CCCCeeCCCCCCcCccCCHHHHHHHHHHhCC---CCC
Confidence            5788  889999999999999998877                456788988  99999999999999999998   999


Q ss_pred             CC---chhccCChHHHHhHHHhhh
Q psy8937         123 PL---CQKCFKNKLYLRRHVISFH  143 (147)
Q Consensus       123 ~~---C~~~f~~~~~l~~H~~~~h  143 (147)
                      +.   |++.|.....|..|+++||
T Consensus        62 ~~~~~C~~~f~~~~~l~~H~~~hh   85 (85)
T 2j7j_A           62 KKDDSCSFVGKTWTLYLKHVAECH   85 (85)
T ss_dssp             CSCSSCCCEESSHHHHHHHHHHCC
T ss_pred             CCCCCCCCccCCHHHHHHHHHhcC
Confidence            99   9999999999999999986

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.77  E-value=5.8e-20  Score=103.46  Aligned_cols=75  Identities=20%  Similarity=0.250  Sum_probs=65.4

Q ss_pred             hcChHHHHHHHhhhcCCCCccCCCCCCCCCCCcCCcccccccccCC-ChHHHHHHHHHHhC-CCcccCCCchhccCChHH
Q psy8937          57 FKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDARYCKICGKHYS-NSSNLKQHIRLIHL-PGILFCPLCQKCFKNKLY  134 (147)
Q Consensus        57 f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~~~-~~~~l~~H~~~~~~-~~~~~C~~C~~~f~~~~~  134 (147)
                      +.....+..|+..|.                ++++|.|..|++.|. ....|..|++.|.+ +++|.|.+|++.|.+...
T Consensus         6 ~~~~~~~~~h~~~h~----------------~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~   69 (98)
T 2gqj_A            6 SGPGGPEEQWQRAIH----------------ERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAG   69 (98)
T ss_dssp             CCCCCSCSHHHHTTT----------------TTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHH
T ss_pred             CCCCCcHHHHHHHhc----------------cCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHH
Confidence            333445667776665                567888999999999 99999999999998 999999999999999999


Q ss_pred             HHhHHHhhhccCC
Q psy8937         135 LRRHVISFHENAT  147 (147)
Q Consensus       135 l~~H~~~~h~~~~  147 (147)
                      |.+|+++||+++|
T Consensus        70 L~~H~~~h~~~kp   82 (98)
T 2gqj_A           70 LNYHTMAEHSAKP   82 (98)
T ss_dssp             HHHHHHHHSCSCS
T ss_pred             HHHHHHHHcCCCC
Confidence            9999999999875

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.77  E-value=6.7e-19  Score=94.10  Aligned_cols=62  Identities=19%  Similarity=0.302  Sum_probs=58.9

Q ss_pred             CCCcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCchhccCChHHHHhHHHhhhccCC
Q psy8937          86 LHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVISFHENAT  147 (147)
Q Consensus        86 ~~~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~  147 (147)
                      ..++++|.|..|++.|.....|..|++.|.++++|.|.+|++.|.....|.+|+++|++++|
T Consensus        12 ~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp   73 (74)
T 2lce_A           12 THSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP   73 (74)
T ss_dssp             CCCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCC
T ss_pred             cCCCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCC
Confidence            33678999999999999999999999999999999999999999999999999999999986

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.76  E-value=7.7e-19  Score=92.87  Aligned_cols=60  Identities=23%  Similarity=0.361  Sum_probs=57.9

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCchhccCChHHHHhHHHhhhccCC
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVISFHENAT  147 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~  147 (147)
                      ++++|.|..|++.|.....|..|++.|.++++|.|++|++.|.....|.+|+++|++++|
T Consensus         6 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p   65 (70)
T 1x5w_A            6 SGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMS   65 (70)
T ss_dssp             CCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSC
T ss_pred             CCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCC
Confidence            678999999999999999999999999999999999999999999999999999999875

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.75  E-value=1.7e-18  Score=87.85  Aligned_cols=57  Identities=26%  Similarity=0.466  Sum_probs=51.3

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCchhccCChHHHHhHHHhhhc
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVISFHE  144 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  144 (147)
                      ++++|.|..|++.|.....|..|++.|.++++|.|++|++.|.....|..|+++||+
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            357899999999999999999999999999999999999999999999999999985

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.75  E-value=5.9e-19  Score=97.49  Aligned_cols=82  Identities=29%  Similarity=0.471  Sum_probs=75.2

Q ss_pred             cCcccccc--cccccCChHHHHHHHHHhcCCCCcCCC--CchhhhcChHHHHHHHhhhcCCCCccCCCCCCCCCCCcCCc
Q psy8937          17 LDARYCKI--CGKHYSNSSNLKQHIRLIHLPGILFCP--LCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDAR   92 (147)
Q Consensus        17 ~~~~~C~~--C~~~f~~~~~l~~h~~~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (147)
                      ...|.|.+  |++.|.....|..|++.|.+.++|.|+  .|++.|.....|..|+..+.                ++++|
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~----------------~~~~~   66 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT----------------GHRPF   66 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHH----------------CCCCE
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcC----------------CCCCc
Confidence            46799999  999999999999999988888999997  59999999999999998887                45678


Q ss_pred             ccccccccCCChHHHHHHHHHH
Q psy8937          93 YCKICGKHYSNSSNLKQHIRLI  114 (147)
Q Consensus        93 ~C~~c~~~~~~~~~l~~H~~~~  114 (147)
                      .|..|++.|...+.|..|++.|
T Consensus        67 ~C~~C~~~f~~~~~l~~H~~~H   88 (89)
T 2wbs_A           67 QCQKCDRAFSRSDHLALHMKRH   88 (89)
T ss_dssp             ECSSSSCEESSHHHHHHHGGGG
T ss_pred             cCCCCCcccCCHHHHHHHHHhh
Confidence            8999999999999999999876

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.75  E-value=1.6e-19  Score=99.68  Aligned_cols=83  Identities=19%  Similarity=0.299  Sum_probs=76.0

Q ss_pred             cCcccccccccccCChHHHHHHHHHhcCCCCcCCCCchhhhcChHHHHHHHhhhcCCCCccCCCCCCCCCCCcCCccccc
Q psy8937          17 LDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDARYCKI   96 (147)
Q Consensus        17 ~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~   96 (147)
                      +++|.|++|++.|.....|..|++.|.+.++|.|+.|++.|.....|..|+..++.                 .+|.|..
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~-----------------~~~~c~~   63 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHI-----------------LPILEDK   63 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTH-----------------HHHHHHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCC-----------------CcchHHH
Confidence            46899999999999999999999999999999999999999999999999987662                 4567999


Q ss_pred             ccccCCChHHHHHHHHHHhC
Q psy8937          97 CGKHYSNSSNLKQHIRLIHL  116 (147)
Q Consensus        97 c~~~~~~~~~l~~H~~~~~~  116 (147)
                      |++.|.....|..|++.+++
T Consensus        64 C~~~f~~~~~L~~H~~~~h~   83 (88)
T 1llm_C           64 VEELLSKNYHLENEVARLKK   83 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHH
Confidence            99999999999999988764

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.73  E-value=5.6e-18  Score=91.53  Aligned_cols=69  Identities=23%  Similarity=0.467  Sum_probs=45.1

Q ss_pred             CCCcCCCC--chhhhcChHHHHHHHh-hhcCCCCccCCCCCCCCCCCcCCccccc--ccccCCChHHHHHHHHHHhCCCc
Q psy8937          45 PGILFCPL--CQKCFKNKLYLRRHVG-TYTHTPSYRSVPGASKPLHSLDARYCKI--CGKHYSNSSNLKQHIRLIHLPGI  119 (147)
Q Consensus        45 ~~~~~C~~--C~~~f~~~~~l~~H~~-~~~~~~~~~~~~~~~~~~~~~~~~~C~~--c~~~~~~~~~l~~H~~~~~~~~~  119 (147)
                      .++|.|..  |++.|.....|..|++ .|.                ++++|.|..  |++.|.....|..|+++|.++++
T Consensus         5 ~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~----------------~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~   68 (79)
T 2dlk_A            5 SSGMPCDFPGCGRIFSNRQYLNHHKKYQHI----------------HQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRD   68 (79)
T ss_dssp             CSSEECSSTTTCCEESSHHHHHHHHHHGGG----------------SCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCC
T ss_pred             CCCccCCCCCCcCccCCHHHHHHHHHHHhC----------------CCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCC
Confidence            34555554  6666666666666665 344                335556766  77777777777777777777777


Q ss_pred             ccCCCchhcc
Q psy8937         120 LFCPLCQKCF  129 (147)
Q Consensus       120 ~~C~~C~~~f  129 (147)
                      |.|++|++.|
T Consensus        69 ~~C~~C~k~F   78 (79)
T 2dlk_A           69 YICEFSGPSS   78 (79)
T ss_dssp             CSCCSSSCCC
T ss_pred             eeCCCCCCCC
Confidence            7777777766

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.73  E-value=5.7e-18  Score=91.13  Aligned_cols=61  Identities=26%  Similarity=0.358  Sum_probs=58.3

Q ss_pred             CCcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCchhccCChHHHHhHHHhhhccCC
Q psy8937          87 HSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVISFHENAT  147 (147)
Q Consensus        87 ~~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~  147 (147)
                      .++++|.|..|++.|.....|..|++.|.++++|.|++|++.|.....|.+|+++|++++|
T Consensus        14 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p   74 (77)
T 2cot_A           14 RERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP   74 (77)
T ss_dssp             CCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCC
T ss_pred             CCCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCC
Confidence            3678999999999999999999999999999999999999999999999999999999876

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.73  E-value=9.6e-18  Score=89.09  Aligned_cols=60  Identities=28%  Similarity=0.314  Sum_probs=57.1

Q ss_pred             CCcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCchhccCChHHHHhHHHhhhccC
Q psy8937          87 HSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVISFHENA  146 (147)
Q Consensus        87 ~~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  146 (147)
                      .++++|.|..|++.|.....|..|++.|.++++|.|++|++.|.....|.+|+++|+++.
T Consensus        10 ~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~   69 (72)
T 1x6e_A           10 SGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGP   69 (72)
T ss_dssp             TTCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHHSSS
T ss_pred             CCCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcCCCC
Confidence            367899999999999999999999999999999999999999999999999999999874

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.71  E-value=8.8e-18  Score=85.18  Aligned_cols=56  Identities=30%  Similarity=0.447  Sum_probs=53.8

Q ss_pred             CcccccccccCCChHHHHHHHHHHhCCCcccCCCchhccCChHHHHhHHHhhhccC
Q psy8937          91 ARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVISFHENA  146 (147)
Q Consensus        91 ~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  146 (147)
                      +|.|..|++.|.....|..|++.|.++++|.|++|++.|.....|.+|+++|++++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            47899999999999999999999999999999999999999999999999999875

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.71  E-value=1.1e-17  Score=91.50  Aligned_cols=78  Identities=26%  Similarity=0.348  Sum_probs=72.2

Q ss_pred             cccc--cccccccCChHHHHHHHHHhcCCCCcCCCC--chhhhcChHHHHHHHhhhcCCCCccCCCCCCCCCCCcCCccc
Q psy8937          19 ARYC--KICGKHYSNSSNLKQHIRLIHLPGILFCPL--CQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDARYC   94 (147)
Q Consensus        19 ~~~C--~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~C   94 (147)
                      +|.|  +.|++.|.....|..|++.|.+.++|.|+.  |++.|.....|..|++.+.+                   |.|
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-------------------~~C   61 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG-------------------YPC   61 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS-------------------EEC
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC-------------------CCC
Confidence            5889  999999999999999999999999999988  99999999999999988773                   569


Q ss_pred             cc---ccccCCChHHHHHHHHHHh
Q psy8937          95 KI---CGKHYSNSSNLKQHIRLIH  115 (147)
Q Consensus        95 ~~---c~~~~~~~~~l~~H~~~~~  115 (147)
                      ..   |++.|.....|..|++.|+
T Consensus        62 ~~~~~C~~~f~~~~~l~~H~~~hh   85 (85)
T 2j7j_A           62 KKDDSCSFVGKTWTLYLKHVAECH   85 (85)
T ss_dssp             CSCSSCCCEESSHHHHHHHHHHCC
T ss_pred             CCCCCCCCccCCHHHHHHHHHhcC
Confidence            99   9999999999999998764

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.70  E-value=1.6e-17  Score=92.97  Aligned_cols=73  Identities=12%  Similarity=0.199  Sum_probs=62.9

Q ss_pred             hhcChHHHHHHHhhhcCCCCccCCCCCCCCCCCcCCcccccccccC-CChHHHHHHHHHHhCCCcccCCCchhccCChHH
Q psy8937          56 CFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDARYCKICGKHY-SNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLY  134 (147)
Q Consensus        56 ~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~~-~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~  134 (147)
                      .|.....|..|+..+.                ++++|.|..|++.| .....|..|+++| ++++|.|.+|++.|.....
T Consensus        15 ~~~~~~~~~~~~~~~~----------------~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F~~~~~   77 (96)
T 2ctd_A           15 VYAAGSLEEQWYLEIV----------------DKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAG   77 (96)
T ss_dssp             SSCTTCHHHHHHHHHH----------------HTSCEECTTTCSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCCSSHHH
T ss_pred             CCCCchHHHHHHHHhc----------------CCCCcCCCCCCCCcccCHHHHHHHHHHH-CCCCeECCCCCCeeCCHHH
Confidence            4555666777776665                55778899999999 9999999999999 9999999999999999999


Q ss_pred             HHhH-HHhhhcc
Q psy8937         135 LRRH-VISFHEN  145 (147)
Q Consensus       135 l~~H-~~~~h~~  145 (147)
                      |..| +++|.++
T Consensus        78 L~~H~~~~H~~~   89 (96)
T 2ctd_A           78 MKYHVMANHNSL   89 (96)
T ss_dssp             HHHHHHHHTCCC
T ss_pred             HHHHhHHhcCCC
Confidence            9999 8877654

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.70  E-value=2.9e-18  Score=94.12  Aligned_cols=81  Identities=20%  Similarity=0.250  Sum_probs=47.4

Q ss_pred             HHHHHhcCCCCcCCCCchhhhcChHHHHHHHhhhcCCCCccCCCCCCCCCCCcCCcccccccccCCChHHHHHHHHHHhC
Q psy8937          37 QHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHL  116 (147)
Q Consensus        37 ~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~~~~~~~l~~H~~~~~~  116 (147)
                      .|+++|.+.++|.|..|++.|.....|..|+..+....            ..+++|.|..|++.|.....|..|++.|.+
T Consensus         5 ~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~------------~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~   72 (86)
T 1x6h_A            5 SSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN------------FVPAAFVCSKCGKTFTRRNTMARHADNCAG   72 (86)
T ss_dssp             CCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSS------------CCCCCEECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             cccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCc------------CCCcceECCCCCChhCCHHHHHHHHHHccC
Confidence            34444455555666666666666666666654433210            012456677777777777777777777777


Q ss_pred             CCcccCCCchhcc
Q psy8937         117 PGILFCPLCQKCF  129 (147)
Q Consensus       117 ~~~~~C~~C~~~f  129 (147)
                      ++++.|..|+..|
T Consensus        73 ~~~~~~~~~~~~~   85 (86)
T 1x6h_A           73 PDGVEGENSGPSS   85 (86)
T ss_dssp             CCSCCCCCCCCCC
T ss_pred             CCCcccCCCCCCC
Confidence            7777777666544

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.70  E-value=2e-17  Score=90.17  Aligned_cols=58  Identities=24%  Similarity=0.619  Sum_probs=53.4

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCchhccCChHHHHhHHHh-hhcc
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVIS-FHEN  145 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~-~h~~  145 (147)
                      ..++|.|+.|++.|.....|..|+++|.++++|.|++|++.|.+...|.+|++. |.+|
T Consensus        25 ~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E   83 (85)
T 2lv2_A           25 SAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSE   83 (85)
T ss_dssp             CCTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTCTTC
T ss_pred             CCCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccCcCC
Confidence            567899999999999999999999999999999999999999999999999864 5444

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.69  E-value=2.9e-17  Score=88.71  Aligned_cols=72  Identities=24%  Similarity=0.445  Sum_probs=64.6

Q ss_pred             CccCcccccc--cccccCChHHHHHHHH-HhcCCCCcCCCC--chhhhcChHHHHHHHhhhcCCCCccCCCCCCCCCCCc
Q psy8937          15 HSLDARYCKI--CGKHYSNSSNLKQHIR-LIHLPGILFCPL--CQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSL   89 (147)
Q Consensus        15 ~~~~~~~C~~--C~~~f~~~~~l~~h~~-~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~   89 (147)
                      ++.++|.|..  |++.|.....|..|++ .|.+.++|.|+.  |++.|.....|..|++.|.                ++
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~----------------~~   66 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHS----------------DT   66 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHH----------------TS
T ss_pred             CCCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhC----------------CC
Confidence            3567899987  9999999999999999 577889999999  9999999999999999887                55


Q ss_pred             CCcccccccccCC
Q psy8937          90 DARYCKICGKHYS  102 (147)
Q Consensus        90 ~~~~C~~c~~~~~  102 (147)
                      ++|.|..|++.|.
T Consensus        67 ~~~~C~~C~k~F~   79 (79)
T 2dlk_A           67 RDYICEFSGPSSG   79 (79)
T ss_dssp             CCCSCCSSSCCCC
T ss_pred             CCeeCCCCCCCCC
Confidence            7788999999884

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.69  E-value=6.1e-17  Score=87.05  Aligned_cols=64  Identities=27%  Similarity=0.330  Sum_probs=57.5

Q ss_pred             CCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCchhhhcChHHHHHHHhhhcCC
Q psy8937          10 GSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTYTHT   73 (147)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~   73 (147)
                      ......++++|.|++|++.|.....|..|++.|.+.++|.|+.|++.|.....|..|++.|.++
T Consensus         9 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~   72 (77)
T 2cot_A            9 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGS   72 (77)
T ss_dssp             CCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCC
T ss_pred             CcCcCCCCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCC
Confidence            3445557899999999999999999999999888889999999999999999999999887744

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.68  E-value=8.7e-17  Score=88.12  Aligned_cols=80  Identities=20%  Similarity=0.359  Sum_probs=68.7

Q ss_pred             CCCCCCCccCccCcccccccccccCChHHHHHHHHHhcCC----CCcCCCCchhhhcChHHHHHHHhhhcCCCCccCCCC
Q psy8937           6 SVPGGSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLP----GILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPG   81 (147)
Q Consensus         6 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~----~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~   81 (147)
                      ++..+...+.++++|.|.+|++.|.....|..|++.++..    ++|.|+.|++.|.....|..|+..+.+.        
T Consensus         2 s~~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~--------   73 (86)
T 1x6h_A            2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGP--------   73 (86)
T ss_dssp             TTTCCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCC--------
T ss_pred             CcccccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCC--------
Confidence            3456777888999999999999999999999999888776    6899999999999999999999888744        


Q ss_pred             CCCCCCCcCCcccccccccC
Q psy8937          82 ASKPLHSLDARYCKICGKHY  101 (147)
Q Consensus        82 ~~~~~~~~~~~~C~~c~~~~  101 (147)
                              +++.|..|+..+
T Consensus        74 --------~~~~~~~~~~~~   85 (86)
T 1x6h_A           74 --------DGVEGENSGPSS   85 (86)
T ss_dssp             --------CSCCCCCCCCCC
T ss_pred             --------CCcccCCCCCCC
Confidence                    555688887654

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.67  E-value=4e-17  Score=91.99  Aligned_cols=61  Identities=16%  Similarity=0.171  Sum_probs=56.5

Q ss_pred             CCcCCcccccccccCCChHHHHHHHHH-H---hCCCcccCCCchhccCChHHHHhH-HHhhhccCC
Q psy8937          87 HSLDARYCKICGKHYSNSSNLKQHIRL-I---HLPGILFCPLCQKCFKNKLYLRRH-VISFHENAT  147 (147)
Q Consensus        87 ~~~~~~~C~~c~~~~~~~~~l~~H~~~-~---~~~~~~~C~~C~~~f~~~~~l~~H-~~~~h~~~~  147 (147)
                      .++++|.|..|++.|...+.|..|++. |   .++++|.|.+|++.|.....|..| +++|.+++|
T Consensus        14 ~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekp   79 (102)
T 2ghf_A           14 KVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEEN   79 (102)
T ss_dssp             CCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCC
T ss_pred             CCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCC
Confidence            388999999999999999999999984 7   568999999999999999999999 899999876

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.67  E-value=1.4e-17  Score=89.60  Aligned_cols=59  Identities=24%  Similarity=0.405  Sum_probs=53.3

Q ss_pred             CcCCcccccccccCCChHHHHHHHH-HHhCC-CcccCCCchhccCChHHHHhHHHhhhccC
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIR-LIHLP-GILFCPLCQKCFKNKLYLRRHVISFHENA  146 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~-~~~~~-~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  146 (147)
                      ++++|.|..|++.|.....|..|++ .|.++ ++|.|++|++.|.....|..|++++|+..
T Consensus        12 ~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~   72 (77)
T 2ct1_A           12 GEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYS   72 (77)
T ss_dssp             CCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSCCS
T ss_pred             CCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCCCC
Confidence            6788999999999999999999997 56554 89999999999999999999999988763

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.67  E-value=4.3e-17  Score=85.06  Aligned_cols=57  Identities=28%  Similarity=0.502  Sum_probs=53.8

Q ss_pred             CcCCcccccccccCCChHHHHHHHHH-H-hCCCcccCCCchhccCChHHHHhHHHhhhc
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRL-I-HLPGILFCPLCQKCFKNKLYLRRHVISFHE  144 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~-~-~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  144 (147)
                      ++++|.|..|++.|.....|..|++. | .++++|.|+.|++.|.+...|..|++++|+
T Consensus         7 ~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            7 GEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             ETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             CCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            67889999999999999999999998 6 488999999999999999999999999997

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.67  E-value=1.2e-16  Score=85.29  Aligned_cols=67  Identities=19%  Similarity=0.271  Sum_probs=58.0

Q ss_pred             CCCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCchhhhcChHHHHHHHhhhcCCCC
Q psy8937           9 GGSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTYTHTPS   75 (147)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~   75 (147)
                      .......+.++|.|.+|++.|.....|..|++.|.+.++|.|+.|++.|.....|..|++.|.++++
T Consensus         7 ~~~~~~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp   73 (74)
T 2lce_A            7 HHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP   73 (74)
T ss_dssp             ----CCCCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCC
T ss_pred             ccccccCCCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCC
Confidence            3344556789999999999999999999999999999999999999999999999999998886543

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.67  E-value=1.2e-16  Score=84.76  Aligned_cols=66  Identities=30%  Similarity=0.311  Sum_probs=61.1

Q ss_pred             CCCCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCchhhhcChHHHHHHHhhhcCC
Q psy8937           8 PGGSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTYTHT   73 (147)
Q Consensus         8 ~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~   73 (147)
                      .+....+.++++|.|++|++.|.....|..|++.|...++|.|+.|++.|.....|..|++.|.+.
T Consensus         3 ~~~~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~   68 (72)
T 1x6e_A            3 SGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSG   68 (72)
T ss_dssp             CCCCCTTTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHHSS
T ss_pred             CCCCcccCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcCCC
Confidence            356677889999999999999999999999999999999999999999999999999999988765

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.65  E-value=1.1e-16  Score=81.89  Aligned_cols=56  Identities=25%  Similarity=0.491  Sum_probs=51.5

Q ss_pred             CCcccccccccCCChHHHHHHHHHHhCCCcccCCCchhccCChHHHHhHH-Hhhhcc
Q psy8937          90 DARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHV-ISFHEN  145 (147)
Q Consensus        90 ~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~-~~~h~~  145 (147)
                      ++|.|..|++.|.....|..|++.|.++++|.|++|++.|.+...|..|+ ++|.++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcCCc
Confidence            46889999999999999999999999999999999999999999999998 566554

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.64  E-value=5.2e-17  Score=91.30  Aligned_cols=75  Identities=24%  Similarity=0.364  Sum_probs=47.0

Q ss_pred             hHHHHHHHHHhcCCCCcCCCCchhhhc-ChHHHHHHHhhhcCCCCccCCCCCCCCCCCcCCcccccccccCCChHHHHHH
Q psy8937          32 SSNLKQHIRLIHLPGILFCPLCQKCFK-NKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDARYCKICGKHYSNSSNLKQH  110 (147)
Q Consensus        32 ~~~l~~h~~~~~~~~~~~C~~C~~~f~-~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~~~~~~~l~~H  110 (147)
                      ...+..|++.|.+.++|.|+.|++.|. ....|..|++.|..               .+++|.|..|++.|.....|..|
T Consensus         9 ~~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~---------------~~~~~~C~~C~k~F~~~~~L~~H   73 (98)
T 2gqj_A            9 GGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQK---------------LQDALKCQHCRKQFKSKAGLNYH   73 (98)
T ss_dssp             CCSCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHH---------------HHHHHSCSSSCCCCSCHHHHHHH
T ss_pred             CCcHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcC---------------CCCCEECCCCCCccCCHHHHHHH
Confidence            344555666555566666666666666 66666666665552               04556676677777777777777


Q ss_pred             HHHHhCCCccc
Q psy8937         111 IRLIHLPGILF  121 (147)
Q Consensus       111 ~~~~~~~~~~~  121 (147)
                      ++.|++++++.
T Consensus        74 ~~~h~~~kp~~   84 (98)
T 2gqj_A           74 TMAEHSAKPSD   84 (98)
T ss_dssp             HHHHSCSCSSC
T ss_pred             HHHHcCCCCCC
Confidence            66666666544

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.64  E-value=2.3e-16  Score=84.97  Aligned_cols=58  Identities=22%  Similarity=0.321  Sum_probs=54.0

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhC---CCcccCCCchhccCChHHHHhHHHhhhcc
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHL---PGILFCPLCQKCFKNKLYLRRHVISFHEN  145 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~---~~~~~C~~C~~~f~~~~~l~~H~~~~h~~  145 (147)
                      ++++|.|..|++.|.....|..|++.|.+   +++|.|++|++.|.....|.+|++.+|..
T Consensus         4 ~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~   64 (78)
T 2d9h_A            4 GSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPA   64 (78)
T ss_dssp             SCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTT
T ss_pred             CCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCC
Confidence            67899999999999999999999999996   89999999999999999999999776654

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.61  E-value=8.7e-16  Score=83.67  Aligned_cols=58  Identities=24%  Similarity=0.602  Sum_probs=53.2

Q ss_pred             CccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCchhhhcChHHHHHHHhh
Q psy8937          12 KPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGT   69 (147)
Q Consensus        12 ~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~   69 (147)
                      ......+.|+|++|++.|.....|..|+++|+++++|.|+.|++.|.....|.+|++.
T Consensus        21 ~~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~   78 (85)
T 2lv2_A           21 GLSASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINK   78 (85)
T ss_dssp             SSCCCCTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHT
T ss_pred             CCCCCCCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcc
Confidence            4455678899999999999999999999999999999999999999999999999853

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.61  E-value=5.1e-16  Score=81.86  Aligned_cols=62  Identities=21%  Similarity=0.266  Sum_probs=57.3

Q ss_pred             cCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCchhhhcChHHHHHHHhhhcCCCC
Q psy8937          14 LHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTYTHTPS   75 (147)
Q Consensus        14 ~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~   75 (147)
                      ++++++|.|.+|++.|.....|..|++.|.+.++|.|+.|++.|.....|..|++.++++++
T Consensus         4 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p   65 (70)
T 1x5w_A            4 GSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMS   65 (70)
T ss_dssp             CCCCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCC
Confidence            45788999999999999999999999998888999999999999999999999998887644

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.61  E-value=1.3e-15  Score=85.09  Aligned_cols=77  Identities=23%  Similarity=0.282  Sum_probs=65.3

Q ss_pred             cccCChHHHHHHHHHhcCCCCcCCCCchhhh-cChHHHHHHHhhhcCCCCccCCCCCCCCCCCcCCcccccccccCCChH
Q psy8937          27 KHYSNSSNLKQHIRLIHLPGILFCPLCQKCF-KNKLYLRRHVGTYTHTPSYRSVPGASKPLHSLDARYCKICGKHYSNSS  105 (147)
Q Consensus        27 ~~f~~~~~l~~h~~~~~~~~~~~C~~C~~~f-~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~~~~~~  105 (147)
                      ..|.....|..|++.+...++|.|+.|++.| .....|..|++.| ++                ++|.|..|++.|...+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~----------------k~~~C~~Cgk~F~~~~   76 (96)
T 2ctd_A           14 PVYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQ----------------EMFTCHHCGKQLRSLA   76 (96)
T ss_dssp             CSSCTTCHHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHHHH-CC----------------CCCCCSSSCCCCSSHH
T ss_pred             CCCCCchHHHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHHHH-CC----------------CCeECCCCCCeeCCHH
Confidence            3567788888999988888999999999999 9999999999887 54                4567999999999999


Q ss_pred             HHHHH-HHHHhCCCcc
Q psy8937         106 NLKQH-IRLIHLPGIL  120 (147)
Q Consensus       106 ~l~~H-~~~~~~~~~~  120 (147)
                      .|..| +++|.++..+
T Consensus        77 ~L~~H~~~~H~~~p~~   92 (96)
T 2ctd_A           77 GMKYHVMANHNSLPSG   92 (96)
T ss_dssp             HHHHHHHHHTCCCSSC
T ss_pred             HHHHHhHHhcCCCCCC
Confidence            99999 7877654433

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.60  E-value=5e-16  Score=87.45  Aligned_cols=70  Identities=14%  Similarity=0.108  Sum_probs=59.3

Q ss_pred             ccCccCcccccccccccCChHHHHHHHHH-h---cCCCCcCCCCchhhhcChHHHHHH-HhhhcCCCCccCCCCCCCCCC
Q psy8937          13 PLHSLDARYCKICGKHYSNSSNLKQHIRL-I---HLPGILFCPLCQKCFKNKLYLRRH-VGTYTHTPSYRSVPGASKPLH   87 (147)
Q Consensus        13 ~~~~~~~~~C~~C~~~f~~~~~l~~h~~~-~---~~~~~~~C~~C~~~f~~~~~l~~H-~~~~~~~~~~~~~~~~~~~~~   87 (147)
                      ...++++|.|..|++.|.....|..|++. |   .+.++|.|..|++.|.....|..| ++.|.                
T Consensus        12 ~~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Ht----------------   75 (102)
T 2ghf_A           12 NKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHP----------------   75 (102)
T ss_dssp             CCCCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTST----------------
T ss_pred             cCCCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcC----------------
Confidence            44578899999999999999999999975 5   346899999999999999999999 77777                


Q ss_pred             CcCCccccccc
Q psy8937          88 SLDARYCKICG   98 (147)
Q Consensus        88 ~~~~~~C~~c~   98 (147)
                      ++++|.|..+.
T Consensus        76 gekpy~C~~~~   86 (102)
T 2ghf_A           76 GEENFKLTMVK   86 (102)
T ss_dssp             TCCCEEEEECC
T ss_pred             CCCCeeCCccc
Confidence            55677787643

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.60  E-value=9.1e-16  Score=77.60  Aligned_cols=56  Identities=25%  Similarity=0.429  Sum_probs=49.9

Q ss_pred             ccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCchhhhcChHHHHHHHhhhc
Q psy8937          16 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTYT   71 (147)
Q Consensus        16 ~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~   71 (147)
                      ++++|.|.+|++.|.....|..|++.|.+.++|.|+.|++.|.....|..|++.++
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh   56 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH   56 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhc
Confidence            35789999999999999999999999999999999999999999999999998764

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.58  E-value=1.3e-15  Score=80.86  Aligned_cols=56  Identities=23%  Similarity=0.497  Sum_probs=52.9

Q ss_pred             CcCCcccc--cccccCCChHHHHHHHHHHhCCCcccCCCchhccCChHHHHhHHHhhh
Q psy8937          88 SLDARYCK--ICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVISFH  143 (147)
Q Consensus        88 ~~~~~~C~--~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h  143 (147)
                      ++++|.|+  .|++.|.....|..|++.|.++++|.|++|++.|.....|.+|+++|+
T Consensus        16 ~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G           16 KMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             CCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTCC
T ss_pred             CCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhcC
Confidence            67889997  599999999999999999999999999999999999999999999873

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.58  E-value=3.9e-16  Score=81.41  Aligned_cols=58  Identities=17%  Similarity=0.239  Sum_probs=54.6

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCC-CchhccCChHHHHhHHHhhhccCC
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCP-LCQKCFKNKLYLRRHVISFHENAT  147 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~-~C~~~f~~~~~l~~H~~~~h~~~~  147 (147)
                      ++++|.|..|++.|. .+.|..|+++ .++++|.|+ .|++.|..+..|..|+++|-+.+|
T Consensus         7 ~~~~~~C~~C~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~~~   65 (66)
T 2eod_A            7 GKRTQPCTYCTKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKDSCNTAL   65 (66)
T ss_dssp             CCCEEECSSSCCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHTTSSSCC
T ss_pred             CCCCeeccccCCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHhhcccCc
Confidence            678899999999999 9999999999 999999999 999999999999999999988764

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.58  E-value=4.4e-15  Score=79.65  Aligned_cols=68  Identities=22%  Similarity=0.371  Sum_probs=59.2

Q ss_pred             CCCCCCCccCccCcccccccccccCChHHHHHHHHHhcC-C-CCcCCCCchhhhcChHHHHHHHhhhcCC
Q psy8937           6 SVPGGSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHL-P-GILFCPLCQKCFKNKLYLRRHVGTYTHT   73 (147)
Q Consensus         6 ~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~-~-~~~~C~~C~~~f~~~~~l~~H~~~~~~~   73 (147)
                      ++..+.+.++++++|.|++|++.|.....|..|++.++. . ++|.|+.|++.|.....|..|++.++..
T Consensus         2 s~~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~   71 (77)
T 2ct1_A            2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSY   71 (77)
T ss_dssp             CCCCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSCC
T ss_pred             CCCccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCCC
Confidence            356677888999999999999999999999999975444 3 7999999999999999999999876543

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.57  E-value=3.5e-16  Score=92.05  Aligned_cols=83  Identities=19%  Similarity=0.351  Sum_probs=71.7

Q ss_pred             ccCcccccccccccC------ChHHHHHHHHHhcCCCCcCCCCchhhhcChHHHHHHHhhhcCCCCccCCCCCCCCCCCc
Q psy8937          16 SLDARYCKICGKHYS------NSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTYTHTPSYRSVPGASKPLHSL   89 (147)
Q Consensus        16 ~~~~~~C~~C~~~f~------~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~~~~~~~~~   89 (147)
                      .++.+.|++|++.|.      ....|..|++ +++.++|.|+.|++.|.....|..|++.|  .                
T Consensus        38 ~~~~~~c~~~~~~~~~~~~~~~~~~l~~h~~-h~~~~~~~C~~C~k~f~~~~~l~~H~~~H--~----------------   98 (129)
T 2wbt_A           38 EQKRLIRAIVKTLIHNPQLLDESSYLYRLLA-SKAISQFVCPLCLMPFSSSVSLKQHIRYT--E----------------   98 (129)
T ss_dssp             HHHHHHHHHHHHHHHCGGGTTTHHHHHHHHH-HHHHCSEECTTTCCEESSHHHHHHHHHHT--C----------------
T ss_pred             hhCcccchhhhcccCCCcccCCHHHHHHHHH-hCCCCCeECCCCCcccCCHhHHHHHHHHC--C----------------
Confidence            456788999988765      6677777875 88889999999999999999999999775  3                


Q ss_pred             CCcccccccccCCChHHHHHHHHHHhCC
Q psy8937          90 DARYCKICGKHYSNSSNLKQHIRLIHLP  117 (147)
Q Consensus        90 ~~~~C~~c~~~~~~~~~l~~H~~~~~~~  117 (147)
                      ++|.|..|++.|...+.|..|++.|++.
T Consensus        99 ~~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           99 HTKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence            4578999999999999999999999875

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.57  E-value=3.5e-15  Score=75.41  Aligned_cols=55  Identities=31%  Similarity=0.512  Sum_probs=51.6

Q ss_pred             cccccccccccCChHHHHHHHHHhcCCCCcCCCCchhhhcChHHHHHHHhhhcCC
Q psy8937          19 ARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTYTHT   73 (147)
Q Consensus        19 ~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~   73 (147)
                      +|.|++|++.|.....|..|++.|.+.++|.|+.|++.|.....|..|++.+.++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   55 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHS   55 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSSC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhccc
Confidence            5899999999999999999999998889999999999999999999999877754

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.55  E-value=3e-15  Score=77.94  Aligned_cols=61  Identities=26%  Similarity=0.439  Sum_probs=54.6

Q ss_pred             CccCccCcccccccccccCChHHHHHHHHHhc--CCCCcCCCCchhhhcChHHHHHHHhhhcC
Q psy8937          12 KPLHSLDARYCKICGKHYSNSSNLKQHIRLIH--LPGILFCPLCQKCFKNKLYLRRHVGTYTH   72 (147)
Q Consensus        12 ~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~--~~~~~~C~~C~~~f~~~~~l~~H~~~~~~   72 (147)
                      ..+.++++|.|+.|++.|.....|..|++.+|  +.++|.|+.|++.|.....|..|++.+++
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             CEEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             cccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            45678899999999999999999999999844  56999999999999999999999987653

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.54  E-value=1.1e-14  Score=78.35  Aligned_cols=60  Identities=20%  Similarity=0.274  Sum_probs=53.8

Q ss_pred             cCccCcccccccccccCChHHHHHHHHHhcC---CCCcCCCCchhhhcChHHHHHHHhh-hcCC
Q psy8937          14 LHSLDARYCKICGKHYSNSSNLKQHIRLIHL---PGILFCPLCQKCFKNKLYLRRHVGT-YTHT   73 (147)
Q Consensus        14 ~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~---~~~~~C~~C~~~f~~~~~l~~H~~~-~~~~   73 (147)
                      ++++++|.|.+|++.|.....|..|++.|++   .++|.|+.|++.|.....|..|++. |...
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~   65 (78)
T 2d9h_A            2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPAL   65 (78)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTT
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCC
Confidence            5678999999999999999999999998886   7899999999999999999999954 4433

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.54  E-value=1e-14  Score=77.22  Aligned_cols=59  Identities=29%  Similarity=0.456  Sum_probs=53.5

Q ss_pred             CCCCCcCCccccc--ccccCCChHHHHHHHHHHhCCCcccCCC--chhccCChHHHHhHHHhh
Q psy8937          84 KPLHSLDARYCKI--CGKHYSNSSNLKQHIRLIHLPGILFCPL--CQKCFKNKLYLRRHVISF  142 (147)
Q Consensus        84 ~~~~~~~~~~C~~--c~~~~~~~~~l~~H~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~  142 (147)
                      ......++|.|..  |++.|.....|..|++.|.++++|.|++  |++.|.....|.+|+++|
T Consensus        10 ~~~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           10 IDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             CCccccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            3344678899988  9999999999999999999999999965  999999999999999875

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=2.3e-14  Score=79.82  Aligned_cols=58  Identities=24%  Similarity=0.273  Sum_probs=53.7

Q ss_pred             CCcccccccccCCChHHHHHHHHH-HhCCCc--------ccCCCchhccCChHHHHhHHHhhhccCC
Q psy8937          90 DARYCKICGKHYSNSSNLKQHIRL-IHLPGI--------LFCPLCQKCFKNKLYLRRHVISFHENAT  147 (147)
Q Consensus        90 ~~~~C~~c~~~~~~~~~l~~H~~~-~~~~~~--------~~C~~C~~~f~~~~~l~~H~~~~h~~~~  147 (147)
                      ..+.|..|++.|.....|..|++. |.++++        |.|++|++.|.....|.+|+++|++++|
T Consensus        24 ~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   90 (95)
T 2ej4_A           24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKS   90 (95)
T ss_dssp             SSSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCC
T ss_pred             CCCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCC
Confidence            346799999999999999999998 888877        9999999999999999999999999875

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=8.6e-14  Score=77.45  Aligned_cols=69  Identities=19%  Similarity=0.110  Sum_probs=47.5

Q ss_pred             CcCCCCchhhhcChHHHHHHHhh-hcCCCCccCCCCCCCCCCCcCCcccccccccCCChHHHHHHHHHHhCCCcccCC
Q psy8937          47 ILFCPLCQKCFKNKLYLRRHVGT-YTHTPSYRSVPGASKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCP  123 (147)
Q Consensus        47 ~~~C~~C~~~f~~~~~l~~H~~~-~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~  123 (147)
                      .+.|+.|++.|.....|..|++. |.+.++....        .-.+|.|..|++.|.....|..|+++|.++++|.|+
T Consensus        25 ~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~--------~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   94 (95)
T 2ej4_A           25 SRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNH--------VCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPSS   94 (95)
T ss_dssp             SSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCC--------CCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCSSC
T ss_pred             CCcccccccccCCHHHHHHHHHHhccCCCCCCcc--------ceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            34677777777777777777665 4433211100        112267999999999999999999999999999886

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.50  E-value=1.8e-14  Score=73.51  Aligned_cols=55  Identities=24%  Similarity=0.485  Sum_probs=50.1

Q ss_pred             CcccccccccccCChHHHHHHHHHhcCCCCcCCCCchhhhcChHHHHHHHh-hhcC
Q psy8937          18 DARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVG-TYTH   72 (147)
Q Consensus        18 ~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~-~~~~   72 (147)
                      ++|.|.+|++.|.....|..|++.|++.++|.|+.|++.|.....|..|+. .|.+
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~   56 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG   56 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcCC
Confidence            479999999999999999999999888899999999999999999999974 4443

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=7.4e-18  Score=89.62  Aligned_cols=54  Identities=19%  Similarity=0.254  Sum_probs=25.4

Q ss_pred             CCCCCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCchhhhcChHHHHHHH
Q psy8937           7 VPGGSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHV   67 (147)
Q Consensus         7 ~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~   67 (147)
                      +..+...+.++++|.|++|++.|.....|..       .++|.|+.|++.|.....|..|+
T Consensus         6 l~~H~~~h~~~~~~~C~~C~k~f~~~~~l~~-------~~~~~C~~C~~~f~~~~~l~~H~   59 (73)
T 2ctu_A            6 SGKRQKIHLGDRSQKCSKCGIIFIRRSTLSR-------RKTPMCEKCRKDSCQEAALNKDE   59 (73)
T ss_dssp             CCCCCCCCCCCSEEECSSSCCEEECCCCCCC-------SSSCCCHHHHHTCSCCCSSCCCS
T ss_pred             HHHHHHHhCCCCCeeCCcccchhCCHHHhCc-------CCCCCCCCCChhhcCHHHHHHHH
Confidence            3444444555555555555555555444433       33444444444444444444444

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.46  E-value=5.9e-14  Score=74.40  Aligned_cols=59  Identities=24%  Similarity=0.457  Sum_probs=53.5

Q ss_pred             CccCccCccccc--ccccccCChHHHHHHHHHhcCCCCcCCCCchhhhcChHHHHHHHhhh
Q psy8937          12 KPLHSLDARYCK--ICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTY   70 (147)
Q Consensus        12 ~~~~~~~~~~C~--~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~   70 (147)
                      ..+.+.++|.|+  .|++.|.....|..|++.|.+.++|.|+.|++.|.....|..|++.|
T Consensus        12 ~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   72 (73)
T 1f2i_G           12 YVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH   72 (73)
T ss_dssp             CCCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTC
T ss_pred             ccCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhc
Confidence            345578899997  59999999999999999999999999999999999999999998654

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.44  E-value=1.6e-14  Score=72.23  Aligned_cols=50  Identities=18%  Similarity=0.247  Sum_probs=46.0

Q ss_pred             cccCCChHHHHHHHHHHhCCCcccCCCchhccCChHHHHhHHHhhhccCC
Q psy8937          98 GKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVISFHENAT  147 (147)
Q Consensus        98 ~~~~~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~  147 (147)
                      ++.|.....|..|++.|.++++|.|++|++.|.....|..|+++|++++|
T Consensus         3 ~k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp   52 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKP   52 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSC
T ss_pred             ccccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCC
Confidence            45677888888999999999999999999999999999999999999876

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.42  E-value=2.4e-13  Score=71.81  Aligned_cols=63  Identities=30%  Similarity=0.465  Sum_probs=55.1

Q ss_pred             CCCCCCccCccCcccccc--cccccCChHHHHHHHHHhcCCCCcCCCC--chhhhcChHHHHHHHhh
Q psy8937           7 VPGGSKPLHSLDARYCKI--CGKHYSNSSNLKQHIRLIHLPGILFCPL--CQKCFKNKLYLRRHVGT   69 (147)
Q Consensus         7 ~~~~~~~~~~~~~~~C~~--C~~~f~~~~~l~~h~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~   69 (147)
                      ..+........++|.|..  |++.|.....|..|++.|.+.++|.|++  |++.|.....|..|++.
T Consensus         5 ~~~~~~~~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~   71 (72)
T 2epa_A            5 SSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT   71 (72)
T ss_dssp             CCCCCCCCCCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTT
T ss_pred             CCCCCCCccccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhc
Confidence            344455556788999999  9999999999999999999999999975  99999999999999854

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.41  E-value=8.7e-14  Score=72.36  Aligned_cols=59  Identities=15%  Similarity=0.219  Sum_probs=52.7

Q ss_pred             CccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCC-CchhhhcChHHHHHHHhhhcC
Q psy8937          12 KPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCP-LCQKCFKNKLYLRRHVGTYTH   72 (147)
Q Consensus        12 ~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~-~C~~~f~~~~~l~~H~~~~~~   72 (147)
                      ...-..++|.|..|++.|. ...|..|++. .+.++|.|+ .|++.|.....|..|++.|..
T Consensus         3 ~~~C~~~~~~C~~C~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~   62 (66)
T 2eod_A            3 SGSSGKRTQPCTYCTKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKDSCN   62 (66)
T ss_dssp             SSCCCCCEEECSSSCCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHTTSS
T ss_pred             cccCCCCCeeccccCCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHhhcc
Confidence            3455778999999999999 9999999997 888999999 999999999999999976553

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.40  E-value=1.9e-13  Score=68.18  Aligned_cols=45  Identities=20%  Similarity=0.326  Sum_probs=42.2

Q ss_pred             CCcCCcccccccccCCChHHHHHHHH-HHhCCCcccCCCchhccCC
Q psy8937          87 HSLDARYCKICGKHYSNSSNLKQHIR-LIHLPGILFCPLCQKCFKN  131 (147)
Q Consensus        87 ~~~~~~~C~~c~~~~~~~~~l~~H~~-~~~~~~~~~C~~C~~~f~~  131 (147)
                      .++++|.|..|++.|.....|..|++ +|.++++|.|++|++.|++
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            8 SVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            37789999999999999999999997 8999999999999999986

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.38  E-value=4.8e-15  Score=78.56  Aligned_cols=37  Identities=11%  Similarity=-0.009  Sum_probs=24.2

Q ss_pred             cCcccccccccccCChHHHHHHHHHhcCCCCcCCCCc
Q psy8937          17 LDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC   53 (147)
Q Consensus        17 ~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C   53 (147)
                      +++|.|++|++.|.....|..|++.|++.++|.|+.|
T Consensus        37 ~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A           37 RKTPMCEKCRKDSCQEAALNKDEGNESGKKTSGPSSG   73 (73)
T ss_dssp             SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCCSSCCCC
T ss_pred             CCCCCCCCCChhhcCHHHHHHHHHhhcCCCCCCCCCC
Confidence            4566666666666666666666666666666666655

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.36  E-value=5.4e-13  Score=66.52  Aligned_cols=49  Identities=18%  Similarity=0.276  Sum_probs=43.7

Q ss_pred             CCccCccCcccccccccccCChHHHHHHHH-HhcCCCCcCCCCchhhhcC
Q psy8937          11 SKPLHSLDARYCKICGKHYSNSSNLKQHIR-LIHLPGILFCPLCQKCFKN   59 (147)
Q Consensus        11 ~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~-~~~~~~~~~C~~C~~~f~~   59 (147)
                      ...+.++++|.|++|++.|.....|..|++ .|.+.++|.|++|++.|.+
T Consensus         4 ~~~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            4 GSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCCCCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            345667899999999999999999999997 7888899999999999975

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.34  E-value=1.7e-12  Score=62.21  Aligned_cols=44  Identities=16%  Similarity=0.207  Sum_probs=40.7

Q ss_pred             CCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCch
Q psy8937          11 SKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQ   54 (147)
Q Consensus        11 ~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C~   54 (147)
                      ...++++++|.|++|++.|.....|..|++.|.+.++|.|+.||
T Consensus         2 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            2 SSGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CCCCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CCCcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            45677899999999999999999999999999999999999996

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=2.7e-12  Score=61.68  Aligned_cols=45  Identities=22%  Similarity=0.161  Sum_probs=41.1

Q ss_pred             CCCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCc
Q psy8937           9 GGSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC   53 (147)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C   53 (147)
                      .+...++++++|.|++|++.|.....|..|++.|.+.++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CCcccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            456678889999999999999999999999999888899999987

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.33  E-value=3.5e-12  Score=61.35  Aligned_cols=45  Identities=22%  Similarity=0.192  Sum_probs=41.0

Q ss_pred             CCCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCc
Q psy8937           9 GGSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC   53 (147)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C   53 (147)
                      .+...++++++|.|++|++.|.....|..|++.|.+.++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCCCccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            345677889999999999999999999999999999999999987

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.32  E-value=8.1e-13  Score=63.63  Aligned_cols=38  Identities=26%  Similarity=0.253  Sum_probs=35.1

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCc
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC  125 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C  125 (147)
                      ++++|.|..|++.|...+.|..|+++|.++++|.|+.|
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            9 GEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             SSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            67888999999999999999999999999999999987

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.31  E-value=3.3e-12  Score=61.41  Aligned_cols=45  Identities=20%  Similarity=0.113  Sum_probs=41.1

Q ss_pred             CCCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCc
Q psy8937           9 GGSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC   53 (147)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C   53 (147)
                      .+.+.++++++|.|++|++.|.....|..|++.|.+.++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            355678889999999999999999999999999999999999987

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=4.2e-12  Score=61.00  Aligned_cols=45  Identities=16%  Similarity=0.087  Sum_probs=41.0

Q ss_pred             CCCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCc
Q psy8937           9 GGSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC   53 (147)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C   53 (147)
                      .+...++++++|.|++|++.|.....|..|++.|.+.++|.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            355677889999999999999999999999999999999999987

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=3.7e-12  Score=61.25  Aligned_cols=45  Identities=20%  Similarity=0.153  Sum_probs=41.1

Q ss_pred             CCCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCc
Q psy8937           9 GGSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC   53 (147)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C   53 (147)
                      ++...+.++++|.|++|++.|.....|..|++.|.+.++|.|+.|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             CSCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            345677889999999999999999999999999999999999987

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=2.6e-12  Score=61.80  Aligned_cols=45  Identities=20%  Similarity=0.127  Sum_probs=41.2

Q ss_pred             CCCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCc
Q psy8937           9 GGSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC   53 (147)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C   53 (147)
                      ++...+.++++|.|++|++.|.....|..|++.|.+.++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            456778889999999999999999999999999888899999987

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=3.6e-12  Score=61.25  Aligned_cols=45  Identities=20%  Similarity=0.175  Sum_probs=41.1

Q ss_pred             CCCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCc
Q psy8937           9 GGSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC   53 (147)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C   53 (147)
                      .+...++++++|.|++|++.|.....|..|++.|.+.++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CCcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            345677889999999999999999999999999999999999987

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.1e-12  Score=63.13  Aligned_cols=38  Identities=18%  Similarity=0.128  Sum_probs=34.9

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCc
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC  125 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C  125 (147)
                      ++++|.|..|++.|...+.|..|+++|.++++|.|++|
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            9 GEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             SCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            66788999999999999999999999999999999987

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=8.7e-13  Score=63.49  Aligned_cols=38  Identities=26%  Similarity=0.216  Sum_probs=34.9

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCc
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC  125 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C  125 (147)
                      ++++|.|..|++.|...+.|..|+++|.++++|.|++|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            9 GEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            66788999999999999999999999999999999987

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1e-12  Score=63.21  Aligned_cols=38  Identities=21%  Similarity=0.236  Sum_probs=35.1

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCc
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC  125 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C  125 (147)
                      ++++|.|..|++.|...+.|..|+++|.++++|.|++|
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            9 GEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             SSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            66888999999999999999999999999999999987

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=4e-12  Score=61.11  Aligned_cols=45  Identities=18%  Similarity=0.098  Sum_probs=40.9

Q ss_pred             CCCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCc
Q psy8937           9 GGSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC   53 (147)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C   53 (147)
                      .+...+.++++|.|++|++.|.....|..|++.|.+.++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            345677889999999999999999999999999999999999987

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=7.8e-13  Score=63.65  Aligned_cols=38  Identities=24%  Similarity=0.232  Sum_probs=34.9

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCc
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC  125 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C  125 (147)
                      ++++|.|..|++.|...+.|..|+++|.++++|.|++|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            9 GERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            66888999999999999999999999999999999987

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=7.6e-13  Score=63.71  Aligned_cols=38  Identities=21%  Similarity=0.288  Sum_probs=34.7

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCc
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC  125 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C  125 (147)
                      ++++|.|..|++.|...+.|..|+++|.++++|.|++|
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            9 GERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            66788999999999999999999999999999999887

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=3.7e-12  Score=61.26  Aligned_cols=45  Identities=18%  Similarity=0.146  Sum_probs=41.1

Q ss_pred             CCCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCc
Q psy8937           9 GGSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC   53 (147)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C   53 (147)
                      ++.+.++++++|.|++|++.|.....|..|++.|.+.++|.|+.|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            345677889999999999999999999999999999999999987

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=3.6e-12  Score=61.29  Aligned_cols=45  Identities=18%  Similarity=0.222  Sum_probs=41.0

Q ss_pred             CCCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCc
Q psy8937           9 GGSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC   53 (147)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C   53 (147)
                      .+...+.++++|.|++|++.|.....|..|++.|.+.++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            345677889999999999999999999999999999999999987

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.30  E-value=1.2e-12  Score=62.97  Aligned_cols=38  Identities=24%  Similarity=0.160  Sum_probs=35.1

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCc
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC  125 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C  125 (147)
                      ++++|.|..|++.|...+.|..|+++|.++++|.|++|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            9 GEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            66888999999999999999999999999999999987

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=1.9e-12  Score=62.27  Aligned_cols=38  Identities=24%  Similarity=0.207  Sum_probs=35.4

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCc
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC  125 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C  125 (147)
                      ++++|.|..|++.|...+.|..|++.|.++++|.|++|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            9 GEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             SCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            67889999999999999999999999999999999987

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=8.8e-13  Score=63.48  Aligned_cols=38  Identities=21%  Similarity=0.188  Sum_probs=34.6

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCc
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC  125 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C  125 (147)
                      ++++|.|..|++.|...+.|..|++.|.++++|.|++|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            9 GVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             CCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            66788899999999999999999999999999999887

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=8.6e-13  Score=63.52  Aligned_cols=38  Identities=21%  Similarity=0.141  Sum_probs=34.8

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCc
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC  125 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C  125 (147)
                      ++++|.|..|++.|...+.|..|+++|.++++|.|++|
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            9 GENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            66888999999999999999999999999999999887

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=4.1e-12  Score=61.08  Aligned_cols=45  Identities=18%  Similarity=0.137  Sum_probs=41.0

Q ss_pred             CCCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCc
Q psy8937           9 GGSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC   53 (147)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C   53 (147)
                      .+...++++++|.|++|++.|.....|..|++.|.+.++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             CcccccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            345677889999999999999999999999999999999999987

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=6.3e-12  Score=60.40  Aligned_cols=44  Identities=18%  Similarity=0.178  Sum_probs=40.2

Q ss_pred             CCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCc
Q psy8937          10 GSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC   53 (147)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C   53 (147)
                      +...++++++|.|++|++.|.....|..|++.|.+.++|.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45667889999999999999999999999999988999999987

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=3.7e-12  Score=61.22  Aligned_cols=45  Identities=20%  Similarity=0.146  Sum_probs=41.0

Q ss_pred             CCCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCc
Q psy8937           9 GGSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC   53 (147)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C   53 (147)
                      ++.+.++++++|.|++|++.|.....|..|++.|.+.++|.|+.|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            345677889999999999999999999999999999999999987

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=3.9e-12  Score=61.18  Aligned_cols=45  Identities=20%  Similarity=0.109  Sum_probs=40.7

Q ss_pred             CCCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCc
Q psy8937           9 GGSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC   53 (147)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C   53 (147)
                      .+...++++++|.|++|++.|.....|..|++.|.+.++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CCCcCcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            345677889999999999999999999999999888899999987

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=8.5e-13  Score=63.54  Aligned_cols=38  Identities=21%  Similarity=0.232  Sum_probs=34.9

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCc
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC  125 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C  125 (147)
                      ++++|.|..|++.|...+.|..|++.|.++++|.|++|
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            9 GEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            67888999999999999999999999999999999987

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=3.7e-12  Score=61.21  Aligned_cols=44  Identities=16%  Similarity=0.135  Sum_probs=40.3

Q ss_pred             CCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCc
Q psy8937          10 GSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC   53 (147)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C   53 (147)
                      +...++++++|.|++|++.|.....|..|++.|.+.++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            45677889999999999999999999999999988999999987

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=5.1e-12  Score=60.72  Aligned_cols=45  Identities=16%  Similarity=0.140  Sum_probs=40.9

Q ss_pred             CCCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCc
Q psy8937           9 GGSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC   53 (147)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C   53 (147)
                      .+...++++++|.|++|++.|.....|..|++.|.+.++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CCccccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            345677889999999999999999999999999999999999987

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=1.2e-12  Score=62.41  Aligned_cols=38  Identities=18%  Similarity=0.042  Sum_probs=34.6

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCc
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC  125 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C  125 (147)
                      ++++|.|..|++.|...+.|..|++.|.++++|.|++|
T Consensus         7 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            7 GEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             SCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            66788999999999999999999999999999999887

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=4.5e-12  Score=60.94  Aligned_cols=45  Identities=20%  Similarity=0.106  Sum_probs=41.1

Q ss_pred             CCCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCc
Q psy8937           9 GGSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC   53 (147)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C   53 (147)
                      ++...++++++|.|++|++.|.....|..|++.|.+.++|.|+.|
T Consensus         2 ~h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCCCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            355678889999999999999999999999999999999999987

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=9.5e-13  Score=63.37  Aligned_cols=38  Identities=18%  Similarity=0.211  Sum_probs=34.5

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCc
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC  125 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C  125 (147)
                      ++++|.|..|++.|...+.|..|+++|.++++|.|+.|
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            9 GERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            66788899999999999999999999999999999887

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=4.2e-12  Score=60.44  Aligned_cols=43  Identities=19%  Similarity=0.025  Sum_probs=39.6

Q ss_pred             CCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCc
Q psy8937          11 SKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC   53 (147)
Q Consensus        11 ~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C   53 (147)
                      ...++++++|.|++|++.|.....|..|++.|.+.++|.|+.|
T Consensus         2 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            2 SSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            4567789999999999999999999999999999999999987

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=4.2e-12  Score=61.00  Aligned_cols=44  Identities=18%  Similarity=0.161  Sum_probs=40.3

Q ss_pred             CCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCc
Q psy8937          10 GSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC   53 (147)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C   53 (147)
                      +...++++++|.|++|++.|.....|..|++.|.+.++|.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45677889999999999999999999999999989999999987

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=3.8e-12  Score=61.20  Aligned_cols=45  Identities=18%  Similarity=0.183  Sum_probs=40.8

Q ss_pred             CCCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCc
Q psy8937           9 GGSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC   53 (147)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C   53 (147)
                      .+...++++++|.|++|++.|.....|..|++.|.+.++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             CccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            345677889999999999999999999999999989999999987

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=1.1e-12  Score=63.13  Aligned_cols=38  Identities=21%  Similarity=0.219  Sum_probs=33.9

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCc
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC  125 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C  125 (147)
                      ++++|.|..|++.|...+.|..|++.|.++++|.|++|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            9 GEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             SCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             CCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            56788899999999999999999999999999999876

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=5e-12  Score=60.75  Aligned_cols=44  Identities=18%  Similarity=0.176  Sum_probs=40.5

Q ss_pred             CCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCc
Q psy8937          10 GSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC   53 (147)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C   53 (147)
                      +...++++++|.|++|++.|.....|..|++.|.+.++|.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            45677889999999999999999999999999999999999987

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.28  E-value=3.4e-12  Score=61.36  Aligned_cols=45  Identities=16%  Similarity=0.118  Sum_probs=40.9

Q ss_pred             CCCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCc
Q psy8937           9 GGSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC   53 (147)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C   53 (147)
                      .+.+.+.++++|.|++|++.|.....|..|++.|.+.++|.|+.|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            355677889999999999999999999999999888999999987

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=3.1e-12  Score=61.52  Aligned_cols=45  Identities=18%  Similarity=0.152  Sum_probs=40.9

Q ss_pred             CCCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCc
Q psy8937           9 GGSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC   53 (147)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C   53 (147)
                      .+...++++++|.|++|++.|.....|..|++.|.+.++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             CcccCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            355677889999999999999999999999999888899999987

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=2.8e-12  Score=61.69  Aligned_cols=45  Identities=16%  Similarity=0.101  Sum_probs=40.9

Q ss_pred             CCCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCc
Q psy8937           9 GGSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC   53 (147)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C   53 (147)
                      .+...+.++++|.|++|++.|.....|..|++.|.+.++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             ccccccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            355678889999999999999999999999999888899999987

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=7.7e-13  Score=63.67  Aligned_cols=38  Identities=21%  Similarity=0.216  Sum_probs=34.7

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCc
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC  125 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C  125 (147)
                      ++++|.|..|++.|...+.|..|++.|.++++|.|++|
T Consensus         9 ~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            9 GEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            56788899999999999999999999999999999887

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=6.9e-13  Score=63.85  Aligned_cols=38  Identities=18%  Similarity=0.186  Sum_probs=34.4

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCc
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC  125 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C  125 (147)
                      ++++|.|..|++.|...+.|..|+++|.++++|.|++|
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            9 GKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            66788899999999999999999999999999999887

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.28  E-value=1.4e-12  Score=63.39  Aligned_cols=41  Identities=17%  Similarity=0.203  Sum_probs=38.6

Q ss_pred             CCcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCchh
Q psy8937          87 HSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQK  127 (147)
Q Consensus        87 ~~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C~~  127 (147)
                      .++++|.|..|++.|.....|..|+++|.++++|.|++|++
T Consensus         8 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            8 RTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            36789999999999999999999999999999999999986

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=4.1e-12  Score=61.04  Aligned_cols=45  Identities=20%  Similarity=0.192  Sum_probs=40.7

Q ss_pred             CCCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCc
Q psy8937           9 GGSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC   53 (147)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C   53 (147)
                      .+...++++++|.|++|++.|.....|..|++.|.+.++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            345677889999999999999999999999999888899999987

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.28  E-value=4.4e-12  Score=60.97  Aligned_cols=45  Identities=13%  Similarity=0.062  Sum_probs=40.6

Q ss_pred             CCCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCc
Q psy8937           9 GGSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC   53 (147)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C   53 (147)
                      .+...++++++|.|++|++.|.....|..|++.|.+.++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CCcCccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            345677889999999999999999999999999888899999987

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=4.7e-12  Score=60.84  Aligned_cols=45  Identities=20%  Similarity=0.166  Sum_probs=40.6

Q ss_pred             CCCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCc
Q psy8937           9 GGSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC   53 (147)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C   53 (147)
                      .+...++++++|.|++|++.|.....|..|++.|.+.++|.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             CCccccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            345677889999999999999999999999998888899999987

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=1.2e-12  Score=62.94  Aligned_cols=38  Identities=18%  Similarity=0.190  Sum_probs=34.9

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCc
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC  125 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C  125 (147)
                      ++++|.|..|++.|...+.|..|+++|.++++|.|+.|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            9 GEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            66788999999999999999999999999999999987

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.28  E-value=4.2e-12  Score=61.01  Aligned_cols=45  Identities=20%  Similarity=0.166  Sum_probs=40.8

Q ss_pred             CCCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCc
Q psy8937           9 GGSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC   53 (147)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C   53 (147)
                      .+...++++++|.|++|++.|.....|..|++.|.+.++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CCccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            345677889999999999999999999999999999999999987

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=8.9e-13  Score=63.46  Aligned_cols=38  Identities=21%  Similarity=0.211  Sum_probs=34.9

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCc
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC  125 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C  125 (147)
                      ++++|.|..|++.|...+.|..|+++|.++++|.|+.|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            9 GEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             CCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            67888999999999999999999999999999999987

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=5.4e-12  Score=60.65  Aligned_cols=44  Identities=16%  Similarity=0.157  Sum_probs=40.5

Q ss_pred             CCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCc
Q psy8937          10 GSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC   53 (147)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C   53 (147)
                      +...++++++|.|++|++.|...+.|..|++.|.+.++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            45677889999999999999999999999999999999999987

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.27  E-value=8.2e-13  Score=63.59  Aligned_cols=38  Identities=16%  Similarity=0.107  Sum_probs=33.7

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCc
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC  125 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C  125 (147)
                      ++++|.|..|++.|...+.|..|++.|.++++|.|++|
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            9 GEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            56788899999999999999999999999999999887

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=6.1e-12  Score=60.44  Aligned_cols=45  Identities=18%  Similarity=0.163  Sum_probs=40.5

Q ss_pred             CCCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCc
Q psy8937           9 GGSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC   53 (147)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C   53 (147)
                      .+...++++++|.|++|++.|.....|..|++.|.+.++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            345677889999999999999999999999999988999999986

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=9.9e-13  Score=63.28  Aligned_cols=38  Identities=24%  Similarity=0.253  Sum_probs=34.4

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCc
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC  125 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C  125 (147)
                      ++++|.|..|++.|...+.|..|+++|.++++|.|++|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            9 GEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            66788899999999999999999999999999999887

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=1e-12  Score=63.23  Aligned_cols=38  Identities=24%  Similarity=0.223  Sum_probs=34.3

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCc
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC  125 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C  125 (147)
                      ++++|.|..|++.|...+.|..|+++|.++++|.|++|
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            9 GEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             CCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            66788899999999999999999999999999999887

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=7.8e-13  Score=63.67  Aligned_cols=38  Identities=21%  Similarity=0.243  Sum_probs=33.8

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCc
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC  125 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C  125 (147)
                      ++++|.|..|++.|...+.|..|++.|.++++|.|++|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            9 GEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             SCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             CCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            56788899999999999999999999999999999887

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.27  E-value=8.4e-13  Score=63.54  Aligned_cols=38  Identities=24%  Similarity=0.222  Sum_probs=33.7

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCc
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC  125 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C  125 (147)
                      ++++|.|..|++.|...+.|..|++.|.++++|.|++|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            9 GEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             TSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            56788899999999999999999999999999999877

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=6.1e-12  Score=60.44  Aligned_cols=44  Identities=18%  Similarity=0.054  Sum_probs=40.2

Q ss_pred             CCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCc
Q psy8937          10 GSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC   53 (147)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C   53 (147)
                      +...+.++++|.|++|++.|.....|..|++.|.+.++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             CcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45667889999999999999999999999999888899999987

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.4e-12  Score=62.77  Aligned_cols=38  Identities=24%  Similarity=0.150  Sum_probs=35.1

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCc
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC  125 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C  125 (147)
                      ++++|.|..|++.|...+.|..|++.|.++++|.|++|
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            9 GEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             SSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            67888999999999999999999999999999999987

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1e-12  Score=63.22  Aligned_cols=38  Identities=21%  Similarity=0.241  Sum_probs=34.2

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCc
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC  125 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C  125 (147)
                      ++++|.|..|++.|...+.|..|++.|.++++|.|++|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            9 GEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            66788899999999999999999999999999999887

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.4e-12  Score=62.75  Aligned_cols=38  Identities=24%  Similarity=0.176  Sum_probs=34.4

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCc
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC  125 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C  125 (147)
                      ++++|.|..|++.|...+.|..|+++|.++++|.|++|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            9 GEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            66788899999999999999999999999999999887

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=4.7e-12  Score=60.86  Aligned_cols=44  Identities=18%  Similarity=0.157  Sum_probs=40.5

Q ss_pred             CCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCc
Q psy8937          10 GSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC   53 (147)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C   53 (147)
                      +...++++++|.|++|++.|.....|..|++.|.+.++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             cCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            45677889999999999999999999999999999999999987

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=4.3e-12  Score=61.00  Aligned_cols=45  Identities=20%  Similarity=0.211  Sum_probs=40.7

Q ss_pred             CCCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCc
Q psy8937           9 GGSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC   53 (147)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C   53 (147)
                      .+...++++++|.|++|++.|.....|..|++.|.+.++|.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CCcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            345677889999999999999999999999998888899999987

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=4.4e-12  Score=60.96  Aligned_cols=44  Identities=20%  Similarity=0.114  Sum_probs=40.5

Q ss_pred             CCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCc
Q psy8937          10 GSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC   53 (147)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C   53 (147)
                      ....+.++++|.|++|++.|.....|..|++.|.+.++|.|+.|
T Consensus         3 ~~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             CSSSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45677889999999999999999999999999999999999987

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.6e-12  Score=62.55  Aligned_cols=38  Identities=24%  Similarity=0.197  Sum_probs=34.4

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCc
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC  125 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C  125 (147)
                      ++++|.|..|++.|...+.|..|+++|.++++|.|++|
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            9 VEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            67788899999999999999999999999999999887

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=4.1e-12  Score=61.08  Aligned_cols=45  Identities=18%  Similarity=0.148  Sum_probs=40.9

Q ss_pred             CCCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCc
Q psy8937           9 GGSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC   53 (147)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C   53 (147)
                      ++...+.++++|.|++|++.|.....|..|++.|.+.++|.|+.|
T Consensus         2 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            355677889999999999999999999999998888899999987

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=4.7e-12  Score=60.84  Aligned_cols=44  Identities=14%  Similarity=0.040  Sum_probs=40.3

Q ss_pred             CCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCc
Q psy8937          10 GSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC   53 (147)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C   53 (147)
                      +...+.++++|.|++|++.|.....|..|++.|.+.++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45677889999999999999999999999999888899999987

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=6.2e-12  Score=60.41  Aligned_cols=44  Identities=18%  Similarity=0.183  Sum_probs=40.1

Q ss_pred             CCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCc
Q psy8937          10 GSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC   53 (147)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C   53 (147)
                      +...++++++|.|++|++.|.....|..|++.|.+.++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45667889999999999999999999999999888999999987

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.26  E-value=2.9e-12  Score=62.21  Aligned_cols=44  Identities=16%  Similarity=0.160  Sum_probs=39.9

Q ss_pred             CccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCchh
Q psy8937          12 KPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQK   55 (147)
Q Consensus        12 ~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C~~   55 (147)
                      ..+.++++|.|.+|++.|.....|..|++.|.+.++|.|++|++
T Consensus         5 ~~~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             SCCCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            34567889999999999999999999999988889999999985

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=7e-12  Score=60.22  Aligned_cols=44  Identities=16%  Similarity=0.043  Sum_probs=40.2

Q ss_pred             CCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCc
Q psy8937          10 GSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC   53 (147)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C   53 (147)
                      +...++++++|.|++|++.|.....|..|++.|.+.++|.|+.|
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            45667889999999999999999999999999888899999987

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.2e-12  Score=62.96  Aligned_cols=38  Identities=21%  Similarity=0.092  Sum_probs=34.7

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCc
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC  125 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C  125 (147)
                      ++++|.|..|++.|...+.|..|++.|.++++|.|+.|
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            9 GEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             CCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            66788999999999999999999999999999999887

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=8.3e-12  Score=59.95  Aligned_cols=44  Identities=14%  Similarity=0.058  Sum_probs=40.3

Q ss_pred             CCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCc
Q psy8937          10 GSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC   53 (147)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C   53 (147)
                      ....++++++|.|++|++.|.....|..|++.|.+.++|.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            3 SGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             cccccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45667889999999999999999999999999999999999987

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=1.7e-12  Score=62.49  Aligned_cols=38  Identities=24%  Similarity=0.159  Sum_probs=34.4

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCc
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC  125 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C  125 (147)
                      ++++|.|..|++.|...+.|..|++.|.++++|.|++|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            9 GEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            66888899999999999999999999999999999887

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.26  E-value=4.5e-12  Score=60.89  Aligned_cols=45  Identities=20%  Similarity=0.128  Sum_probs=40.8

Q ss_pred             CCCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCc
Q psy8937           9 GGSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC   53 (147)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C   53 (147)
                      ++...++++++|.|++|++.|.....|..|++.|.+.++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             CSCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCCCCCcCeECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            355678889999999999999999999999999888899999987

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=5.2e-12  Score=60.70  Aligned_cols=44  Identities=16%  Similarity=0.107  Sum_probs=40.1

Q ss_pred             CCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCc
Q psy8937          10 GSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC   53 (147)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C   53 (147)
                      +...++++++|.|++|++.|.....|..|++.|.+.++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45667889999999999999999999999998888899999987

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.26  E-value=4.2e-12  Score=61.00  Aligned_cols=45  Identities=18%  Similarity=0.052  Sum_probs=40.6

Q ss_pred             CCCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCc
Q psy8937           9 GGSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC   53 (147)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C   53 (147)
                      .+...++++++|.|++|++.|.....|..|++.|.+.++|.|+.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             ccccCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            345677889999999999999999999999998888899999987

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=6.5e-12  Score=60.32  Aligned_cols=44  Identities=18%  Similarity=0.160  Sum_probs=40.2

Q ss_pred             CCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCc
Q psy8937          10 GSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC   53 (147)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C   53 (147)
                      +...++++++|.|++|++.|.....|..|++.|.+.++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            45677889999999999999999999999998888899999987

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=8.5e-13  Score=63.54  Aligned_cols=38  Identities=18%  Similarity=0.154  Sum_probs=34.1

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCc
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC  125 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C  125 (147)
                      ++++|.|..|++.|...+.|..|++.|.++++|.|++|
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            9 GEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            66788899999999999999999999999999999887

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1.2e-12  Score=62.96  Aligned_cols=38  Identities=21%  Similarity=0.214  Sum_probs=33.4

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCc
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC  125 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C  125 (147)
                      ++++|.|..|++.|...+.|..|+++|.++++|.|++|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            9 GEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            56778899999999999999999999999999999887

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=5.4e-12  Score=60.65  Aligned_cols=44  Identities=16%  Similarity=0.118  Sum_probs=40.3

Q ss_pred             CCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCc
Q psy8937          10 GSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC   53 (147)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C   53 (147)
                      ....++++++|.|++|++.|.....|..|++.|.+.++|.|+.|
T Consensus         3 ~~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            45677889999999999999999999999998888899999987

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.25  E-value=6.6e-12  Score=60.06  Aligned_cols=39  Identities=15%  Similarity=0.247  Sum_probs=37.1

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCch
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQ  126 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C~  126 (147)
                      ++++|.|..|++.|...+.|..|+++|.++++|.|+.||
T Consensus         7 ~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            7 GEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             SCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            678999999999999999999999999999999999996

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1.2e-12  Score=63.04  Aligned_cols=38  Identities=21%  Similarity=0.205  Sum_probs=34.3

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCc
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC  125 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C  125 (147)
                      ++++|.|..|++.|...+.|..|+++|.++++|.|++|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            9 GEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             CCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            66788899999999999999999999999999999887

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=2.4e-12  Score=61.88  Aligned_cols=38  Identities=16%  Similarity=0.096  Sum_probs=34.7

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCc
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC  125 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C  125 (147)
                      ++++|.|..|++.|...+.|..|+++|.++++|+|+.|
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            9 REKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             CCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            66788999999999999999999999999999999887

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=8.5e-13  Score=63.54  Aligned_cols=38  Identities=24%  Similarity=0.275  Sum_probs=34.2

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCc
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC  125 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C  125 (147)
                      ++++|.|..|++.|...+.|..|+++|.++++|.|++|
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            9 STKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            56788899999999999999999999999999999887

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.25  E-value=7.4e-13  Score=63.73  Aligned_cols=38  Identities=21%  Similarity=0.087  Sum_probs=33.4

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCc
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC  125 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C  125 (147)
                      ++++|.|..|++.|...+.|..|+++|.++++|.|++|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            9 GVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             CCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            56778899999999999999999999989999999887

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.24  E-value=2.2e-12  Score=62.06  Aligned_cols=38  Identities=18%  Similarity=0.079  Sum_probs=34.7

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCc
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC  125 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C  125 (147)
                      ++++|.|..|++.|...+.|..|++.|.++++|.|++|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            9 GEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            66888999999999999999999999999999999887

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.24  E-value=7.9e-13  Score=62.37  Aligned_cols=34  Identities=21%  Similarity=0.167  Sum_probs=18.5

Q ss_pred             HHhCCCcccCCCchhccCChHHHHhHHHhhhccC
Q psy8937         113 LIHLPGILFCPLCQKCFKNKLYLRRHVISFHENA  146 (147)
Q Consensus       113 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  146 (147)
                      +|.++++|.|++|++.|.+...|.+|+++|++++
T Consensus         4 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~   37 (42)
T 2el5_A            4 GSSGENPYECSECGKAFNRKDQLISHQRTHAGES   37 (42)
T ss_dssp             SSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCC
T ss_pred             CCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCC
Confidence            3445555555555555555555555555555544

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.24  E-value=6.7e-12  Score=60.28  Aligned_cols=44  Identities=18%  Similarity=0.161  Sum_probs=40.1

Q ss_pred             CCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCc
Q psy8937          10 GSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC   53 (147)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C   53 (147)
                      +...++++++|.|++|++.|.....|..|++.|.+.++|.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             ccccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45677889999999999999999999999998888899999987

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.2e-12  Score=62.99  Aligned_cols=38  Identities=18%  Similarity=0.146  Sum_probs=32.5

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCc
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC  125 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C  125 (147)
                      ++++|.|..|++.|...+.|..|+++|.++++|.|++|
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            9 GGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             CCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            56778888888888888888888888888888888876

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.2e-12  Score=61.75  Aligned_cols=35  Identities=17%  Similarity=0.289  Sum_probs=19.6

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccC
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFC  122 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C  122 (147)
                      ++++|.|..|++.|...+.|..|+++|.++++|.|
T Consensus         7 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   41 (42)
T 2yte_A            7 GEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS   41 (42)
T ss_dssp             SCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCC
T ss_pred             CCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCC
Confidence            34555555555555555555555555555555554

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.24  E-value=1.5e-12  Score=62.61  Aligned_cols=38  Identities=16%  Similarity=0.075  Sum_probs=33.4

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCc
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC  125 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C  125 (147)
                      ++++|.|..|++.|...+.|..|+++|.++++|.|++|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            9 GEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            56788899999999999999999999989999999887

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=1.3e-12  Score=62.86  Aligned_cols=38  Identities=21%  Similarity=0.232  Sum_probs=33.2

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCc
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC  125 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C  125 (147)
                      ++++|.|..|++.|...+.|..|++.|.++++|.|++|
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            9 GEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             CCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            56778899999999999999999998888899999877

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=1.5e-11  Score=59.08  Aligned_cols=45  Identities=18%  Similarity=0.176  Sum_probs=40.4

Q ss_pred             CCCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCc
Q psy8937           9 GGSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC   53 (147)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C   53 (147)
                      .+...++++++|.|++|++.|.....|..|++.|.+.++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~~   46 (46)
T 2em2_A            2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSSCC
T ss_pred             CCCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            345677889999999999999999999999999999999999875

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=3.8e-12  Score=61.18  Aligned_cols=45  Identities=20%  Similarity=0.154  Sum_probs=40.7

Q ss_pred             CCCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCc
Q psy8937           9 GGSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC   53 (147)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C   53 (147)
                      .+...++++++|.|++|++.|.....|..|++.|.+.++|.|+.|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            345667889999999999999999999999999989999999987

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=6.9e-12  Score=60.26  Aligned_cols=44  Identities=18%  Similarity=0.176  Sum_probs=40.1

Q ss_pred             CCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCc
Q psy8937          10 GSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC   53 (147)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C   53 (147)
                      +...++++++|.|++|++.|.....|..|++.|.+.++|.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             STTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             cccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45667889999999999999999999999999888899999987

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.23  E-value=1.2e-12  Score=62.96  Aligned_cols=38  Identities=21%  Similarity=0.215  Sum_probs=34.1

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCc
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC  125 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C  125 (147)
                      ++++|.|..|++.|...+.|..|+++|.++++|.|+.|
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            9 GEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             CCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            56788899999999999999999999999999999887

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.23  E-value=1.7e-12  Score=62.46  Aligned_cols=38  Identities=24%  Similarity=0.177  Sum_probs=33.5

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCc
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC  125 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C  125 (147)
                      ++++|.|..|++.|...+.|..|++.|.++++|.|++|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            9 GEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCcCeECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            56788899999999999999999999999999999887

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=8.7e-12  Score=59.89  Aligned_cols=45  Identities=18%  Similarity=0.153  Sum_probs=40.2

Q ss_pred             CCCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCc
Q psy8937           9 GGSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC   53 (147)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C   53 (147)
                      .+...++++++|.|++|++.|.....|..|++.|.+.++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            345677889999999999999999999999998888899999875

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=1.7e-12  Score=62.48  Aligned_cols=38  Identities=21%  Similarity=0.201  Sum_probs=34.5

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCc
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC  125 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C  125 (147)
                      ++++|.|..|++.|...+.|..|+++|.++++|.|++|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            9 GEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             SCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            66788899999999999999999999999999999887

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.22  E-value=1.9e-12  Score=62.30  Aligned_cols=38  Identities=18%  Similarity=0.170  Sum_probs=33.9

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCc
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC  125 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C  125 (147)
                      ++++|.|..|++.|.....|..|+++|.++++|.|++|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            9 GVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            66788899999999999999999999999999999887

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=1.4e-11  Score=59.33  Aligned_cols=44  Identities=16%  Similarity=0.099  Sum_probs=40.0

Q ss_pred             CCCccCccCcccccccccccCChHHHHHHHH-HhcCCCCcCCCCc
Q psy8937          10 GSKPLHSLDARYCKICGKHYSNSSNLKQHIR-LIHLPGILFCPLC   53 (147)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~-~~~~~~~~~C~~C   53 (147)
                      +...+.++++|.|++|++.|.....|..|++ .|.+.++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             cccccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            4567788999999999999999999999999 8888899999987

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=9.8e-13  Score=62.02  Aligned_cols=38  Identities=18%  Similarity=0.121  Sum_probs=28.5

Q ss_pred             HHHHHhCCCcccCCCchhccCChHHHHhHHHhhhccCC
Q psy8937         110 HIRLIHLPGILFCPLCQKCFKNKLYLRRHVISFHENAT  147 (147)
Q Consensus       110 H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~  147 (147)
                      |+++|.++++|.|++|++.|.....|..|+++|++++|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   39 (42)
T 2ytb_A            2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP   39 (42)
T ss_dssp             CCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSC
T ss_pred             CccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCC
Confidence            44556777788888888888888888888888777764

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.22  E-value=1.8e-12  Score=59.35  Aligned_cols=35  Identities=20%  Similarity=0.442  Sum_probs=31.6

Q ss_pred             HHhCCCcccCCCchhccCChHHHHhHHHhhhccCC
Q psy8937         113 LIHLPGILFCPLCQKCFKNKLYLRRHVISFHENAT  147 (147)
Q Consensus       113 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~  147 (147)
                      .|.++++|.|.+|++.|.....|..|+++|++++|
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            3 SGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            46788999999999999999999999999999876

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=1.2e-12  Score=62.41  Aligned_cols=38  Identities=18%  Similarity=-0.005  Sum_probs=27.9

Q ss_pred             HHHHHhCCCcccCCCchhccCChHHHHhHHHhhhccCC
Q psy8937         110 HIRLIHLPGILFCPLCQKCFKNKLYLRRHVISFHENAT  147 (147)
Q Consensus       110 H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~  147 (147)
                      |+++|.++++|.|++|++.|.....|..|+++|++++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~   40 (44)
T 2epv_A            3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSG   40 (44)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSC
T ss_pred             CCcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCC
Confidence            44556677777777777777777777777777777654

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=1.7e-12  Score=62.42  Aligned_cols=38  Identities=21%  Similarity=0.207  Sum_probs=31.8

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCc
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC  125 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C  125 (147)
                      ++++|.|..|++.|...+.|..|++.|.++++|.|++|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            9 GEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            56778888888888888888888888888888888765

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=9e-13  Score=63.45  Aligned_cols=38  Identities=24%  Similarity=0.208  Sum_probs=33.1

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCc
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC  125 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C  125 (147)
                      ++++|.|..|++.|...+.|..|+++|.++++|.|++|
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            9 GEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            56778899999999999999999988888889998887

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.21  E-value=2.8e-11  Score=57.26  Aligned_cols=42  Identities=21%  Similarity=0.220  Sum_probs=38.2

Q ss_pred             CCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCC
Q psy8937          11 SKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPL   52 (147)
Q Consensus        11 ~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~   52 (147)
                      ...++++++|.|.+|++.|.....|..|++.|.+.++|.|++
T Consensus         2 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   43 (43)
T 2yrm_A            2 SSGSSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPSSG   43 (43)
T ss_dssp             CSCCSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSCC
T ss_pred             CcCcCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccCCC
Confidence            456788999999999999999999999999999999999974

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.21  E-value=1.5e-12  Score=62.61  Aligned_cols=36  Identities=22%  Similarity=0.141  Sum_probs=26.2

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCC
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCP  123 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~  123 (147)
                      ++++|.|..|++.|...+.|..|+++|.++++|+|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em4_A            9 GQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS   44 (46)
T ss_dssp             CSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCC
T ss_pred             CCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCC
Confidence            566777777777777777777777777777777775

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=1.6e-12  Score=62.58  Aligned_cols=36  Identities=22%  Similarity=0.201  Sum_probs=27.2

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCC
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCP  123 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~  123 (147)
                      ++++|.|..|++.|...+.|..|+++|.++++|.|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoh_A            9 GKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS   44 (46)
T ss_dssp             CSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTT
T ss_pred             CCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            567777777777777777777777777777777775

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.21  E-value=1.7e-12  Score=62.49  Aligned_cols=36  Identities=28%  Similarity=0.240  Sum_probs=26.3

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCC
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCP  123 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~  123 (147)
                      ++++|.|..|++.|.....|..|+++|.++++|.|+
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emj_A            9 GEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSC
T ss_pred             CCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            566777777777777777777777777777777775

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=1.2e-12  Score=61.67  Aligned_cols=34  Identities=21%  Similarity=0.198  Sum_probs=19.3

Q ss_pred             HHhCCCcccCCCchhccCChHHHHhHHHhhhccC
Q psy8937         113 LIHLPGILFCPLCQKCFKNKLYLRRHVISFHENA  146 (147)
Q Consensus       113 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  146 (147)
                      +|.++++|.|++|++.|.....|.+|+++|.+++
T Consensus         5 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~   38 (42)
T 2en2_A            5 SSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSG   38 (42)
T ss_dssp             CCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCC
T ss_pred             ccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCC
Confidence            3445555555555555555555555555555554

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=5.8e-12  Score=60.54  Aligned_cols=38  Identities=21%  Similarity=0.233  Sum_probs=33.5

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCc
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC  125 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C  125 (147)
                      ++++|.|..|++.|...+.|..|++.|.++++|.|++|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~~   46 (46)
T 2em2_A            9 GEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSSCC
T ss_pred             CCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            66788899999999999999999999999999999865

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=2.3e-11  Score=58.36  Aligned_cols=38  Identities=21%  Similarity=0.197  Sum_probs=35.3

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCc
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC  125 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C  125 (147)
                      ++++|.|..|++.|...+.|..|+++|.++++|.|++|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            9 GEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             SCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            67889999999999999999999999999999999987

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=4e-12  Score=61.34  Aligned_cols=38  Identities=18%  Similarity=0.144  Sum_probs=34.3

Q ss_pred             CcCCcccccccccCCChHHHHHHHH-HHhCCCcccCCCc
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIR-LIHLPGILFCPLC  125 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~-~~~~~~~~~C~~C  125 (147)
                      ++++|.|..|++.|...+.|..|++ +|.++++|.|+.|
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            9 GKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             CCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            6678889999999999999999999 9999999999887

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=1.7e-12  Score=62.43  Aligned_cols=36  Identities=19%  Similarity=0.216  Sum_probs=24.8

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCC
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCP  123 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~  123 (147)
                      ++++|.|..|++.|...+.|..|+++|.++++|.|+
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enf_A            9 GEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCS
T ss_pred             CCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCC
Confidence            456667777777777777777777766666677665

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.20  E-value=1.3e-12  Score=61.60  Aligned_cols=36  Identities=14%  Similarity=0.180  Sum_probs=23.1

Q ss_pred             HHHhCCCcccCCCchhccCChHHHHhHHHhhhccCC
Q psy8937         112 RLIHLPGILFCPLCQKCFKNKLYLRRHVISFHENAT  147 (147)
Q Consensus       112 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~  147 (147)
                      ++|.++++|.|++|++.|.....|..|+++|++++|
T Consensus         4 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~   39 (42)
T 2eos_A            4 GSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGP   39 (42)
T ss_dssp             SCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSS
T ss_pred             cccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCC
Confidence            345566666666666666666666666666666553

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.20  E-value=8.2e-12  Score=56.31  Aligned_cols=34  Identities=29%  Similarity=0.454  Sum_probs=30.9

Q ss_pred             HhCCCcccCCCchhccCChHHHHhHHHhhhccCC
Q psy8937         114 IHLPGILFCPLCQKCFKNKLYLRRHVISFHENAT  147 (147)
Q Consensus       114 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~  147 (147)
                      |.++++|.|++|++.|.+...|..|+++|++++|
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHHHHcCCCC
Confidence            5678899999999999999999999999999876

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=1.8e-12  Score=62.40  Aligned_cols=36  Identities=22%  Similarity=0.212  Sum_probs=21.4

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCC
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCP  123 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~  123 (147)
                      ++++|.|..|++.|...+.|..|+++|.++++|.|+
T Consensus         9 ~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emi_A            9 GERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS   44 (46)
T ss_dssp             SCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCC
T ss_pred             CCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCC
Confidence            445566666666666666666666666666666554

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=2.3e-12  Score=61.98  Aligned_cols=36  Identities=22%  Similarity=0.233  Sum_probs=24.6

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCC
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCP  123 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~  123 (147)
                      ++++|.|..|++.|...+.|..|+++|.++++|.|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ep1_A            9 GEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPS   44 (46)
T ss_dssp             SCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSS
T ss_pred             CCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            456666777777777777777777666666666665

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=2e-12  Score=62.19  Aligned_cols=37  Identities=19%  Similarity=0.221  Sum_probs=26.9

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCC
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPL  124 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~  124 (147)
                      ++++|.|..|++.|...+.|..|+++|.++++|.|++
T Consensus         9 ~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em3_A            9 GEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS   45 (46)
T ss_dssp             SCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSCC
T ss_pred             CCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5667777777777777777777777777777777753

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=2.2e-11  Score=58.46  Aligned_cols=38  Identities=24%  Similarity=0.155  Sum_probs=35.4

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCc
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC  125 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C  125 (147)
                      ++++|.|..|++.|...+.|..|+++|.++++|.|++|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            9 GEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             CCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            67889999999999999999999999999999999987

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=2.1e-12  Score=61.48  Aligned_cols=35  Identities=23%  Similarity=0.203  Sum_probs=17.6

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccC
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFC  122 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C  122 (147)
                      ++++|.|..|++.|...+.|..|+++|.++++|.|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2eof_A            9 GEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS   43 (44)
T ss_dssp             CCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCC
T ss_pred             CCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCC
Confidence            34445555555555555555555555555555544

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=1.7e-12  Score=62.48  Aligned_cols=36  Identities=25%  Similarity=0.428  Sum_probs=25.9

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCC
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCP  123 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~  123 (147)
                      ++++|.|..|++.|...+.|..|+++|.++++|.|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eoz_A            9 GEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS   44 (46)
T ss_dssp             SCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCC
T ss_pred             CCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            566677777777777777777777777777777765

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.19  E-value=2e-12  Score=60.93  Aligned_cols=34  Identities=21%  Similarity=0.219  Sum_probs=18.4

Q ss_pred             HHhCCCcccCCCchhccCChHHHHhHHHhhhccC
Q psy8937         113 LIHLPGILFCPLCQKCFKNKLYLRRHVISFHENA  146 (147)
Q Consensus       113 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  146 (147)
                      +|.++++|.|++|++.|.....|..|+++|++++
T Consensus         5 ~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k   38 (42)
T 2epc_A            5 SSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSG   38 (42)
T ss_dssp             CCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCC
T ss_pred             cCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCC
Confidence            3445555555555555555555555555555544

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=2.3e-12  Score=61.99  Aligned_cols=36  Identities=22%  Similarity=0.291  Sum_probs=22.8

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCC
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCP  123 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~  123 (147)
                      ++++|.|..|++.|...+.|..|+++|.++++|.|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yth_A            9 GEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCC
T ss_pred             CCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            455666666666666666666666666666666664

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=2.3e-12  Score=62.00  Aligned_cols=36  Identities=25%  Similarity=0.284  Sum_probs=23.4

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCC
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCP  123 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~  123 (147)
                      ++++|.|..|++.|...+.|..|+++|.++++|.|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq2_A            9 GGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS   44 (46)
T ss_dssp             SSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCC
T ss_pred             CCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            456666666666666666666666666666666664

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=2.1e-12  Score=62.11  Aligned_cols=36  Identities=19%  Similarity=0.141  Sum_probs=26.5

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCC
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCP  123 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~  123 (147)
                      ++++|.|..|++.|...+.|..|++.|.++++|.|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eow_A            9 GEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS   44 (46)
T ss_dssp             CCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTT
T ss_pred             CCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCC
Confidence            566777777777777777777777777777777775

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=4.4e-11  Score=57.36  Aligned_cols=44  Identities=18%  Similarity=0.118  Sum_probs=39.6

Q ss_pred             CCCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCC
Q psy8937           9 GGSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPL   52 (147)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~   52 (147)
                      .+...++++++|.|++|++.|.....|..|++.|.+.++|.|+.
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en9_A            2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            35567888999999999999999999999999999999999975

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=1.6e-12  Score=62.59  Aligned_cols=36  Identities=22%  Similarity=0.206  Sum_probs=22.9

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCC
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCP  123 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~  123 (147)
                      ++++|.|..|++.|...+.|..|+++|.++++|.|+
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytp_A            9 GERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSC
T ss_pred             CCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            455666666666666666666666666666666664

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=2.7e-12  Score=61.70  Aligned_cols=37  Identities=22%  Similarity=0.265  Sum_probs=27.2

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCC
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPL  124 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~  124 (147)
                      ++++|.|..|++.|...+.|..|+++|.++++|.|++
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~~   45 (46)
T 2eor_A            9 GEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSSTT
T ss_pred             CCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCCC
Confidence            5667777777777777777777777777777777753

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=3.3e-12  Score=61.43  Aligned_cols=37  Identities=22%  Similarity=0.171  Sum_probs=29.1

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCC
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPL  124 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~  124 (147)
                      ++++|.|..|++.|...+.|..|+++|.++++|.|++
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en9_A            9 GKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             SSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCCC
T ss_pred             CCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            5677888888888888888888888888888887763

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=2.7e-12  Score=61.73  Aligned_cols=36  Identities=25%  Similarity=0.306  Sum_probs=26.4

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCC
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCP  123 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~  123 (147)
                      ++++|.|..|++.|...+.|..|+++|.++++|.|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emz_A            9 GERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS   44 (46)
T ss_dssp             CCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSC
T ss_pred             CCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            566777777777777777777777777777777775

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=2e-12  Score=62.19  Aligned_cols=36  Identities=19%  Similarity=0.244  Sum_probs=26.0

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCC
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCP  123 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~  123 (147)
                      ++++|.|..|++.|.....|..|+++|.++++|.|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2emg_A            9 GENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS   44 (46)
T ss_dssp             SCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSC
T ss_pred             CCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            556677777777777777777777777777777775

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=2e-12  Score=62.22  Aligned_cols=36  Identities=19%  Similarity=0.228  Sum_probs=24.6

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCC
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCP  123 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~  123 (147)
                      ++++|.|..|++.|...+.|..|+++|.++++|.|+
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yti_A            9 GEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTT
T ss_pred             CCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCC
Confidence            456667777777777777777777666666666665

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.19  E-value=1.7e-12  Score=61.81  Aligned_cols=35  Identities=17%  Similarity=0.192  Sum_probs=18.4

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccC
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFC  122 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C  122 (147)
                      ++++|.|..|++.|.....|..|++.|.++++|.|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2yu5_A            9 GENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSS   43 (44)
T ss_dssp             CCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCC
T ss_pred             CCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCC
Confidence            34455555555555555555555555555555554

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=2.1e-12  Score=62.10  Aligned_cols=36  Identities=19%  Similarity=0.169  Sum_probs=25.8

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCC
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCP  123 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~  123 (147)
                      ++++|.|..|++.|...+.|..|+++|.++++|.|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A            9 GEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             SCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTB
T ss_pred             CCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCC
Confidence            556677777777777777777777777777777765

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=2.3e-12  Score=61.97  Aligned_cols=36  Identities=28%  Similarity=0.372  Sum_probs=24.6

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCC
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCP  123 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~  123 (147)
                      ++++|.|..|++.|...+.|..|+++|.++++|.|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em6_A            9 GEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTT
T ss_pred             CCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            456666777777777777777776666666666665

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=2e-12  Score=61.54  Aligned_cols=35  Identities=23%  Similarity=0.289  Sum_probs=18.1

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccC
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFC  122 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C  122 (147)
                      ++++|.|..|++.|...+.|..|+++|.++++|.|
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   43 (44)
T 2en7_A            9 GMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS   43 (44)
T ss_dssp             SSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCC
T ss_pred             CCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCC
Confidence            34445555555555555555555555555555544

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=1.6e-12  Score=61.92  Aligned_cols=35  Identities=20%  Similarity=0.121  Sum_probs=17.2

Q ss_pred             HHHhCCCcccCCCchhccCChHHHHhHHHhhhccC
Q psy8937         112 RLIHLPGILFCPLCQKCFKNKLYLRRHVISFHENA  146 (147)
Q Consensus       112 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  146 (147)
                      ++|.++++|.|++|++.|.....|..|+++|++++
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~   39 (44)
T 2eoj_A            5 SSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQS   39 (44)
T ss_dssp             CSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSC
T ss_pred             cccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCC
Confidence            33444455555555555555555555555544443

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=99.18  E-value=1.2e-11  Score=55.79  Aligned_cols=34  Identities=18%  Similarity=0.335  Sum_probs=31.3

Q ss_pred             HhCCCcccCCCchhccCChHHHHhHHHhhhccCC
Q psy8937         114 IHLPGILFCPLCQKCFKNKLYLRRHVISFHENAT  147 (147)
Q Consensus       114 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~  147 (147)
                      |.++++|.|.+|++.|.....|.+|+++|++++|
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSCCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            5678999999999999999999999999999876

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=2.1e-12  Score=62.11  Aligned_cols=36  Identities=25%  Similarity=0.256  Sum_probs=23.1

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCC
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCP  123 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~  123 (147)
                      ++++|.|..|++.|.....|..|+++|.++++|.|+
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            9 GEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             CCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            455666666666666666666666666666666664

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=99.18  E-value=3.7e-12  Score=58.29  Aligned_cols=36  Identities=19%  Similarity=0.133  Sum_probs=32.3

Q ss_pred             HHHHHhCCCcccCCCchhccCChHHHHhHHHhhhcc
Q psy8937         110 HIRLIHLPGILFCPLCQKCFKNKLYLRRHVISFHEN  145 (147)
Q Consensus       110 H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~  145 (147)
                      |++.|.++++|.|+.|++.|.....|..|+++|+++
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTCC
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhccC
Confidence            456788999999999999999999999999999874

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=2.4e-12  Score=61.91  Aligned_cols=36  Identities=25%  Similarity=0.269  Sum_probs=25.6

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCC
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCP  123 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~  123 (147)
                      ++++|.|..|++.|.....|..|+++|.++++|.|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eon_A            9 GEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS   44 (46)
T ss_dssp             SCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTS
T ss_pred             CCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCC
Confidence            556677777777777777777777777777777765

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.18  E-value=2.3e-12  Score=61.96  Aligned_cols=36  Identities=22%  Similarity=0.214  Sum_probs=24.8

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCC
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCP  123 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~  123 (147)
                      ++++|.|..|++.|.....|..|++.|.++++|.|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq1_A            9 GEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS   44 (46)
T ss_dssp             CSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCC
T ss_pred             CCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            456667777777777777777777766666777665

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=2.3e-12  Score=61.99  Aligned_cols=36  Identities=22%  Similarity=0.129  Sum_probs=24.1

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCC
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCP  123 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~  123 (147)
                      ++++|.|..|++.|...+.|..|+++|.++++|.|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytf_A            9 GEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS   44 (46)
T ss_dssp             CCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCC
T ss_pred             CCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            456666666666666666666666666666666665

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.17  E-value=6e-11  Score=56.90  Aligned_cols=43  Identities=23%  Similarity=0.233  Sum_probs=38.8

Q ss_pred             CCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCC
Q psy8937          10 GSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPL   52 (147)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~   52 (147)
                      +...+.++++|.|++|++.|.....|..|++.|.+.++|.|.+
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eom_A            3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCCC
Confidence            4566778999999999999999999999999999999999974

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.17  E-value=4.1e-11  Score=57.49  Aligned_cols=43  Identities=19%  Similarity=0.076  Sum_probs=39.0

Q ss_pred             CCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCC
Q psy8937          10 GSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPL   52 (147)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~   52 (147)
                      +...+.++++|.|.+|++.|.....|..|++.|.+.++|.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em4_A            3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPSS   45 (46)
T ss_dssp             SCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCCC
T ss_pred             CccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            4567788999999999999999999999999999999999975

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.17  E-value=4.5e-11  Score=57.31  Aligned_cols=44  Identities=23%  Similarity=0.158  Sum_probs=39.2

Q ss_pred             CCCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCC
Q psy8937           9 GGSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPL   52 (147)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~   52 (147)
                      .+...+.++++|.|++|++.|.....|..|++.|.+.++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emj_A            2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSCC
T ss_pred             CCCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            34567788999999999999999999999999998889999975

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.17  E-value=2.5e-12  Score=61.81  Aligned_cols=36  Identities=22%  Similarity=0.283  Sum_probs=22.1

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCC
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCP  123 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~  123 (147)
                      ++++|.|..|++.|...+.|..|+++|.++++|.|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~   44 (46)
T 2yts_A            9 GEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS   44 (46)
T ss_dssp             SCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCC
T ss_pred             CCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCC
Confidence            455566666666666666666666666666666654

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.16  E-value=1.3e-13  Score=70.78  Aligned_cols=45  Identities=11%  Similarity=0.355  Sum_probs=40.0

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCchhccCChHHH
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYL  135 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l  135 (147)
                      ++++|.|..|++.|...+.|.   +.|.++++|.|++|++.|....++
T Consensus        11 ~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~~   55 (62)
T 1vd4_A           11 NRASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDESA   55 (62)
T ss_dssp             SSSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTTC
T ss_pred             CCCCccCCCCCchhccHHHhH---hhcCCCCCEECCCCCCccccCccc
Confidence            678899999999999988886   789999999999999999877654

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=6e-11  Score=56.88  Aligned_cols=43  Identities=19%  Similarity=0.127  Sum_probs=38.6

Q ss_pred             CCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCC
Q psy8937          10 GSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPL   52 (147)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~   52 (147)
                      +...++++++|.|++|++.|.....|..|++.|.+.++|.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eoh_A            3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPSS   45 (46)
T ss_dssp             CCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTTC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4566788999999999999999999999999988889999974

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=4.2e-11  Score=57.42  Aligned_cols=44  Identities=16%  Similarity=0.162  Sum_probs=39.0

Q ss_pred             CCCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCC
Q psy8937           9 GGSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPL   52 (147)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~   52 (147)
                      .+...+.++++|.|++|++.|.....|..|++.|.+.++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2emg_A            2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            34567778999999999999999999999999888889999974

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.16  E-value=5.1e-12  Score=60.15  Aligned_cols=36  Identities=25%  Similarity=0.243  Sum_probs=25.2

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCC
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCP  123 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~  123 (147)
                      ++++|.|..|++.|...+.|..|+++|.++++|.|+
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            9 AKTTSECQECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             SSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            556677777777777777777777777777777663

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=5e-11  Score=57.11  Aligned_cols=43  Identities=16%  Similarity=0.076  Sum_probs=38.9

Q ss_pred             CCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCC
Q psy8937          10 GSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPL   52 (147)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~   52 (147)
                      +...++++++|.|++|++.|.....|..|++.|.+.++|.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eow_A            3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTTC
T ss_pred             ccCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCCC
Confidence            4566788999999999999999999999999999999999974

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=5.6e-11  Score=56.96  Aligned_cols=43  Identities=16%  Similarity=0.164  Sum_probs=38.9

Q ss_pred             CCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCC
Q psy8937          10 GSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPL   52 (147)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~   52 (147)
                      +...+.++++|.|.+|++.|.....|..|++.|.+.++|.|++
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em3_A            3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4567788999999999999999999999999999999999975

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.16  E-value=2.3e-11  Score=58.37  Aligned_cols=38  Identities=18%  Similarity=0.166  Sum_probs=34.7

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCc
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLC  125 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C  125 (147)
                      ++++|.|..|++.|.....|..|++.|.++++|.|++|
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            9 GEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             TCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            67889999999999999999999999999999999887

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.16  E-value=3.2e-12  Score=60.86  Aligned_cols=35  Identities=20%  Similarity=0.229  Sum_probs=18.5

Q ss_pred             HHHhCCCcccCCCchhccCChHHHHhHHHhhhccC
Q psy8937         112 RLIHLPGILFCPLCQKCFKNKLYLRRHVISFHENA  146 (147)
Q Consensus       112 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  146 (147)
                      ++|.++++|.|++|++.|.....|..|+++|.+++
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~   39 (44)
T 2emb_A            5 SSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKS   39 (44)
T ss_dssp             SCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCC
T ss_pred             cccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCC
Confidence            34445555555555555555555555555555544

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=2.1e-12  Score=61.53  Aligned_cols=34  Identities=21%  Similarity=0.213  Sum_probs=17.3

Q ss_pred             HHhCCCcccCCCchhccCChHHHHhHHHhhhccC
Q psy8937         113 LIHLPGILFCPLCQKCFKNKLYLRRHVISFHENA  146 (147)
Q Consensus       113 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  146 (147)
                      +|.++++|.|++|++.|.....|..|+++|++++
T Consensus         6 ~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~   39 (44)
T 2eox_A            6 SGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKS   39 (44)
T ss_dssp             CCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCC
T ss_pred             CCCCCCCeECcccCcccCCHHHHHHHHHHhCCCC
Confidence            3444555555555555555555555555555443

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=2.7e-12  Score=61.72  Aligned_cols=36  Identities=25%  Similarity=0.300  Sum_probs=23.4

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCC
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCP  123 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~  123 (147)
                      ++++|.|..|++.|...+.|..|+++|.++++|.|+
T Consensus         9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yrj_A            9 GEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSC
T ss_pred             CCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            456666666666666666666666666666666664

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=5e-11  Score=57.14  Aligned_cols=43  Identities=19%  Similarity=0.202  Sum_probs=39.0

Q ss_pred             CCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCC
Q psy8937          10 GSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPL   52 (147)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~   52 (147)
                      +...+.++++|.|.+|++.|.....|..|++.|.+.++|.|++
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~~   45 (46)
T 2eor_A            3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             SSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSSTT
T ss_pred             CCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCCC
Confidence            4567788999999999999999999999999999999999975

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=5.6e-11  Score=57.00  Aligned_cols=44  Identities=20%  Similarity=0.312  Sum_probs=39.4

Q ss_pred             CCCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCC
Q psy8937           9 GGSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPL   52 (147)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~   52 (147)
                      ++...++++++|.|++|++.|.....|..|++.|.+.++|.|+.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eoz_A            2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS   45 (46)
T ss_dssp             CSCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCCC
T ss_pred             CccccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            35567788999999999999999999999999999999999974

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=3.6e-11  Score=57.70  Aligned_cols=43  Identities=21%  Similarity=0.183  Sum_probs=38.7

Q ss_pred             CCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCC
Q psy8937          10 GSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPL   52 (147)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~   52 (147)
                      +...+.++++|.|++|++.|.....|..|++.|.+.++|.|++
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eon_A            3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS   45 (46)
T ss_dssp             CSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTSC
T ss_pred             CCCCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCCC
Confidence            4567788999999999999999999999999888889999974

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=3.7e-11  Score=57.63  Aligned_cols=44  Identities=18%  Similarity=0.131  Sum_probs=39.1

Q ss_pred             CCCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCC
Q psy8937           9 GGSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPL   52 (147)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~   52 (147)
                      .+...++++++|.|++|++.|.....|..|++.|.+.++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytp_A            2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSCC
T ss_pred             CcccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            34567788999999999999999999999999888889999975

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=6.5e-11  Score=56.71  Aligned_cols=43  Identities=19%  Similarity=0.153  Sum_probs=38.6

Q ss_pred             CCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCC
Q psy8937          10 GSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPL   52 (147)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~   52 (147)
                      +...+.++++|.|++|++.|.....|..|++.|.+.++|.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep1_A            3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             CCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSSC
T ss_pred             cccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4566788999999999999999999999999888889999974

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=3.4e-12  Score=61.39  Aligned_cols=36  Identities=22%  Similarity=0.266  Sum_probs=26.0

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCC
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCP  123 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~  123 (147)
                      ++++|.|..|++.|.....|..|+++|.++++|.|+
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enh_A            9 GEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS   44 (46)
T ss_dssp             CSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCC
T ss_pred             CCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            566777777777777777777777777777777765

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=5.1e-11  Score=57.13  Aligned_cols=44  Identities=23%  Similarity=0.259  Sum_probs=38.9

Q ss_pred             CCCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCC
Q psy8937           9 GGSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPL   52 (147)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~   52 (147)
                      .+...++++++|.|.+|++.|.....|..|++.|.+.++|.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em6_A            2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTTC
T ss_pred             CCccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            34567788999999999999999999999999888889999974

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=5e-11  Score=57.14  Aligned_cols=43  Identities=16%  Similarity=0.138  Sum_probs=38.4

Q ss_pred             CCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCC
Q psy8937          10 GSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPL   52 (147)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~   52 (147)
                      +...++++++|.|++|++.|.....|..|++.|.+.++|.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enf_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCSC
T ss_pred             CCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCCC
Confidence            4566778999999999999999999999999888889999975

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=5.3e-11  Score=57.05  Aligned_cols=44  Identities=18%  Similarity=0.135  Sum_probs=39.0

Q ss_pred             CCCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCC
Q psy8937           9 GGSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPL   52 (147)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~   52 (147)
                      .+...+.++++|.|++|++.|.....|..|++.|.+.++|.|+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emi_A            2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS   45 (46)
T ss_dssp             CCCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCCC
T ss_pred             CCCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCCC
Confidence            34567788999999999999999999999999888889999974

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=3.2e-12  Score=61.44  Aligned_cols=36  Identities=22%  Similarity=0.205  Sum_probs=24.2

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCC
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCP  123 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~  123 (147)
                      ++++|.|..|++.|...+.|..|++.|.++++|.|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq3_A            9 GEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS   44 (46)
T ss_dssp             CCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSC
T ss_pred             CCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            456666666666666666666666666666666664

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.14  E-value=5.9e-11  Score=56.89  Aligned_cols=43  Identities=16%  Similarity=0.149  Sum_probs=38.3

Q ss_pred             CCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCC
Q psy8937          10 GSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPL   52 (147)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~   52 (147)
                      +...+.++++|.|++|++.|.....|..|++.|.+.++|.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yti_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTTC
T ss_pred             CCcCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCCC
Confidence            4566778999999999999999999999999888889999974

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=6.3e-11  Score=56.79  Aligned_cols=43  Identities=21%  Similarity=0.196  Sum_probs=38.4

Q ss_pred             CCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCC
Q psy8937          10 GSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPL   52 (147)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~   52 (147)
                      +...++++++|.|++|++.|.....|..|++.|.+.++|.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq2_A            3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCCC
T ss_pred             cccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            4567788999999999999999999999999888889999974

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=6.3e-11  Score=56.79  Aligned_cols=44  Identities=20%  Similarity=0.213  Sum_probs=39.5

Q ss_pred             CCCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCC
Q psy8937           9 GGSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPL   52 (147)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~   52 (147)
                      .+...+.++++|.|++|++.|.....|..|++.|.+.++|.|+.
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emz_A            2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPSS   45 (46)
T ss_dssp             CCCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            34567788999999999999999999999999999999999974

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=5.4e-11  Score=57.02  Aligned_cols=43  Identities=19%  Similarity=0.066  Sum_probs=38.5

Q ss_pred             CCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCC
Q psy8937          10 GSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPL   52 (147)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~   52 (147)
                      +...++++++|.|++|++.|.....|..|++.|.+.++|.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytf_A            3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCCC
T ss_pred             CCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4566788999999999999999999999999888889999975

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.13  E-value=1.1e-10  Score=55.35  Aligned_cols=43  Identities=21%  Similarity=0.177  Sum_probs=38.2

Q ss_pred             CCCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCC
Q psy8937           9 GGSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCP   51 (147)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~   51 (147)
                      +....+.++++|.|++|++.|.....|..|++.|.+.++|.|+
T Consensus         2 ~h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            2 SSGSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             CCSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            3456677899999999999999999999999999888999985

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=1e-10  Score=54.87  Aligned_cols=40  Identities=15%  Similarity=0.208  Sum_probs=36.0

Q ss_pred             CccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCC
Q psy8937          12 KPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCP   51 (147)
Q Consensus        12 ~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~   51 (147)
                      ..+.++++|.|++|++.|.....|..|++.|.+.++|.|.
T Consensus         3 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            3 SGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             SSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             cCcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            4577889999999999999999999999988888999884

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=7.1e-11  Score=56.61  Aligned_cols=43  Identities=19%  Similarity=0.137  Sum_probs=38.3

Q ss_pred             CCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCC
Q psy8937          10 GSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPL   52 (147)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~   52 (147)
                      +...+.++++|.|++|++.|.....|..|++.|.+.++|.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq1_A            3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCCC
T ss_pred             cccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4566778999999999999999999999999888889999974

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.12  E-value=3.3e-12  Score=67.96  Aligned_cols=56  Identities=20%  Similarity=0.219  Sum_probs=50.3

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCchhccCChHHHHhHHHhhhccC
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVISFHENA  146 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  146 (147)
                      +++++.|..|++.|. ...|..|. .+.+++++.|+.|++.|.+ ..|..|++++.++.
T Consensus        14 ~~r~~~C~~C~~~~~-~~~L~~H~-~~c~~~~~~C~~C~~~~~~-~~l~~H~~~c~~~~   69 (75)
T 2d9k_A           14 PLRLAVCQHCDLELS-ILKLKEHE-DYCGARTELCGNCGRNVLV-KDLKTHPEVCGREG   69 (75)
T ss_dssp             CCCCEECSSSCCEEC-HHHHHHHH-HHHHHCEEECSSSCCEEET-TGGGTHHHHBTTBS
T ss_pred             CCcccCCcccChHhh-HHHHHHHH-hHcCCCceEcccCCCcCcH-HHHHHHHHHccCCc
Confidence            668889999999995 99999999 8999999999999999884 89999999987763

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=7.8e-11  Score=56.46  Aligned_cols=43  Identities=19%  Similarity=0.203  Sum_probs=38.2

Q ss_pred             CCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCC
Q psy8937          10 GSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPL   52 (147)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~   52 (147)
                      +...++++++|.|++|++.|.....|..|++.|.+.++|.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yth_A            3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCCC
T ss_pred             cccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            4556778899999999999999999999999888889999974

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=99.12  E-value=3e-11  Score=55.88  Aligned_cols=33  Identities=18%  Similarity=0.419  Sum_probs=19.8

Q ss_pred             hCCCcccCCCchhccCChHHHHhHHHhhhccCC
Q psy8937         115 HLPGILFCPLCQKCFKNKLYLRRHVISFHENAT  147 (147)
Q Consensus       115 ~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~  147 (147)
                      .++++|.|++|++.|.....|..|+++|++++|
T Consensus         2 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   34 (39)
T 1njq_A            2 WPPRSYTCSFCKREFRSAQALGGHMNVHRRDRA   34 (39)
T ss_dssp             CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCT
T ss_pred             CCCCceECCCCCcccCCHHHHHHHHHHcCCCcc
Confidence            345566666666666666666666666665543

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=6.8e-11  Score=56.68  Aligned_cols=43  Identities=19%  Similarity=0.181  Sum_probs=38.4

Q ss_pred             CCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCC
Q psy8937          10 GSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPL   52 (147)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~   52 (147)
                      +...++++++|.|++|++.|.....|..|++.|.+.++|.|+.
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enh_A            3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCCC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4567788999999999999999999999999888889999974

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.12  E-value=6.3e-11  Score=55.64  Aligned_cols=40  Identities=18%  Similarity=0.167  Sum_probs=35.9

Q ss_pred             CccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCC
Q psy8937          12 KPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCP   51 (147)
Q Consensus        12 ~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~   51 (147)
                      ..++++++|.|++|++.|.....|..|++.|.+.++|.|+
T Consensus         3 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            3 SGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             SSSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            4677889999999999999999999999988888999885

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=9.8e-11  Score=56.11  Aligned_cols=43  Identities=16%  Similarity=0.099  Sum_probs=38.7

Q ss_pred             CCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCC
Q psy8937          10 GSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPL   52 (147)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~   52 (147)
                      +...+.++++|.|++|++.|.....|..|++.|.+.++|.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yto_A            3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPSS   45 (46)
T ss_dssp             CCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTBC
T ss_pred             cccccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCCC
Confidence            4566788999999999999999999999999998889999974

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=7.7e-11  Score=55.88  Aligned_cols=42  Identities=19%  Similarity=0.202  Sum_probs=37.2

Q ss_pred             CCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCC
Q psy8937          10 GSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCP   51 (147)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~   51 (147)
                      +...++++++|.|++|++.|.....|..|++.|.+.++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             SCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            456678899999999999999999999999988888999885

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=5.6e-11  Score=56.72  Aligned_cols=43  Identities=19%  Similarity=0.166  Sum_probs=38.1

Q ss_pred             CCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCC
Q psy8937          10 GSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPL   52 (147)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~   52 (147)
                      +...+.++++|.|++|++.|.....|..|++.|.+.++|.|+.
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (45)
T 2epu_A            3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSSG   45 (45)
T ss_dssp             CCCCCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSCC
T ss_pred             CCCCCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCCC
Confidence            3456778899999999999999999999999888889999974

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.11  E-value=3.7e-11  Score=55.16  Aligned_cols=32  Identities=22%  Similarity=0.267  Sum_probs=27.6

Q ss_pred             HhCCCcccCCC--chhccCChHHHHhHHHhhhcc
Q psy8937         114 IHLPGILFCPL--CQKCFKNKLYLRRHVISFHEN  145 (147)
Q Consensus       114 ~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~h~~  145 (147)
                      +.+++||+|++  |++.|...+.|.+|+++|+++
T Consensus         4 ~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            4 GSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             SSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            46788999986  999999999999999998875

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.11  E-value=4.1e-12  Score=61.10  Aligned_cols=36  Identities=25%  Similarity=0.221  Sum_probs=23.5

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhC-CCcccCC
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHL-PGILFCP  123 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~-~~~~~C~  123 (147)
                      ++++|.|..|++.|...+.|..|+++|.+ +++|.|+
T Consensus         9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~   45 (46)
T 2eoy_A            9 KEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSS   45 (46)
T ss_dssp             CSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSC
T ss_pred             CCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCC
Confidence            45666666666666666666666666666 6666664

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=1e-10  Score=55.47  Aligned_cols=42  Identities=19%  Similarity=0.130  Sum_probs=37.4

Q ss_pred             CCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCC
Q psy8937          10 GSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCP   51 (147)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~   51 (147)
                      +...+.++++|.|++|++.|.....|..|++.|.+.++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             CccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            455677899999999999999999999999988888999885

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.11  E-value=5.7e-11  Score=55.80  Aligned_cols=41  Identities=24%  Similarity=0.378  Sum_probs=35.9

Q ss_pred             CCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCC
Q psy8937          10 GSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFC   50 (147)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C   50 (147)
                      +...++++++|.|++|++.|.....|..|++.|.+.++|.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            45677888999999999999999999999998888888877

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.11  E-value=6e-11  Score=56.85  Aligned_cols=43  Identities=19%  Similarity=0.195  Sum_probs=38.2

Q ss_pred             CCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCC
Q psy8937          10 GSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPL   52 (147)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~   52 (147)
                      +...++++++|.|++|++.|.....|..|++.|.+.++|.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~   45 (46)
T 2yts_A            3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCCC
T ss_pred             CCCCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCCC
Confidence            4566778999999999999999999999999888889999974

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.11  E-value=1e-10  Score=54.88  Aligned_cols=41  Identities=22%  Similarity=0.293  Sum_probs=36.5

Q ss_pred             CCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCC
Q psy8937          10 GSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFC   50 (147)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C   50 (147)
                      +...+.++++|.|++|++.|.....|..|++.|.+.++|.|
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            45667788999999999999999999999998888899887

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=7.6e-11  Score=56.48  Aligned_cols=43  Identities=21%  Similarity=0.209  Sum_probs=38.3

Q ss_pred             CCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCC
Q psy8937          10 GSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPL   52 (147)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~   52 (147)
                      +...+.++++|.|++|++.|.....|..|++.|.+.++|.|+.
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yrj_A            3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSCC
T ss_pred             CccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            4566778999999999999999999999999888889999974

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.10  E-value=7.3e-11  Score=55.40  Aligned_cols=41  Identities=17%  Similarity=0.296  Sum_probs=36.6

Q ss_pred             CCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCC
Q psy8937          10 GSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFC   50 (147)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C   50 (147)
                      +...++++++|.|++|++.|.....|..|++.|.+.++|.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            45667789999999999999999999999999988899887

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.10  E-value=1.1e-10  Score=55.32  Aligned_cols=42  Identities=14%  Similarity=0.117  Sum_probs=37.4

Q ss_pred             CCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCC
Q psy8937          10 GSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCP   51 (147)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~   51 (147)
                      +...+.++++|.|++|++.|.....|..|++.|.+.++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             CccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            456677899999999999999999999999988888999885

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=8.6e-11  Score=56.79  Aligned_cols=44  Identities=18%  Similarity=0.067  Sum_probs=39.9

Q ss_pred             CCCccCccCccccc--ccccccCChHHHHHHHHHhcCCCCcCCCCc
Q psy8937          10 GSKPLHSLDARYCK--ICGKHYSNSSNLKQHIRLIHLPGILFCPLC   53 (147)
Q Consensus        10 ~~~~~~~~~~~~C~--~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C   53 (147)
                      +.+.++++++|.|.  .|++.|.....|..|++.|.+.++|.|..|
T Consensus         3 ~~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CCCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45677889999998  899999999999999998888899999987

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=8.8e-11  Score=55.69  Aligned_cols=42  Identities=17%  Similarity=0.135  Sum_probs=37.3

Q ss_pred             CCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCC
Q psy8937          10 GSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCP   51 (147)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~   51 (147)
                      +...++++++|.|++|++.|.....|..|++.|.+.++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             SCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             CccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            456778899999999999999999999999988888999885

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=99.09  E-value=8.9e-11  Score=52.21  Aligned_cols=30  Identities=23%  Similarity=0.332  Sum_probs=19.9

Q ss_pred             CcccCCCchhccCChHHHHhHHHhhhccCC
Q psy8937         118 GILFCPLCQKCFKNKLYLRRHVISFHENAT  147 (147)
Q Consensus       118 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~  147 (147)
                      ++|.|++|++.|.....|..|+++|.+++|
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~   30 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGE   30 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCC
Confidence            356666777777777777777766666654

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.08  E-value=1.4e-10  Score=54.71  Aligned_cols=37  Identities=22%  Similarity=0.264  Sum_probs=31.5

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCC
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPL  124 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~  124 (147)
                      ++++|.|..|++.|...+.|..|++.|.++++|.|++
T Consensus         7 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   43 (43)
T 2yrm_A            7 GNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPSSG   43 (43)
T ss_dssp             SSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSCC
T ss_pred             CCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccCCC
Confidence            5678888889988888888888888888888888864

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.08  E-value=1.1e-10  Score=55.89  Aligned_cols=43  Identities=19%  Similarity=0.130  Sum_probs=38.3

Q ss_pred             CCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCC
Q psy8937          10 GSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPL   52 (147)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~   52 (147)
                      +...+.++++|.|++|++.|.....|..|++.|.+.++|.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq3_A            3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSS   45 (46)
T ss_dssp             CCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSCC
T ss_pred             cccCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4567788999999999999999999999999888889999974

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.08  E-value=4.4e-11  Score=55.90  Aligned_cols=34  Identities=21%  Similarity=0.227  Sum_probs=20.9

Q ss_pred             HhCCCcccCCCchhccCChHHHHhHHHhhhccCC
Q psy8937         114 IHLPGILFCPLCQKCFKNKLYLRRHVISFHENAT  147 (147)
Q Consensus       114 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~  147 (147)
                      |.++++|.|++|++.|.....|..|+++|++++|
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~   38 (41)
T 2ept_A            5 SSGQRVYECQECGKSFRQKGSLTLHERIHTGSGP   38 (41)
T ss_dssp             CCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSC
T ss_pred             cCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCC
Confidence            4455666666666666666666666666665543

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.07  E-value=9.8e-11  Score=56.12  Aligned_cols=43  Identities=21%  Similarity=0.137  Sum_probs=38.2

Q ss_pred             CCCccCccCcccccccccccCChHHHHHHHHHhcC-CCCcCCCC
Q psy8937          10 GSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHL-PGILFCPL   52 (147)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~-~~~~~C~~   52 (147)
                      +...+.++++|.|++|++.|.....|..|++.|.+ .++|.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~~   46 (46)
T 2eoy_A            3 SGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSCC
T ss_pred             CccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45667789999999999999999999999998888 89999974

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.07  E-value=7.9e-11  Score=55.01  Aligned_cols=40  Identities=23%  Similarity=0.292  Sum_probs=35.0

Q ss_pred             CCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCC
Q psy8937          11 SKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFC   50 (147)
Q Consensus        11 ~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C   50 (147)
                      ...++++++|.|++|++.|.....|..|++.|.+.++|.|
T Consensus         2 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            2 SSGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             CSSCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             CCccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            3567788999999999999999999999998888888887

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.06  E-value=8.7e-11  Score=53.17  Aligned_cols=33  Identities=18%  Similarity=0.142  Sum_probs=29.1

Q ss_pred             HhCCCcccCCCchhccCChHHHHhHHHhhhccC
Q psy8937         114 IHLPGILFCPLCQKCFKNKLYLRRHVISFHENA  146 (147)
Q Consensus       114 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  146 (147)
                      |.++++|.|++|++.|.....|..|+++|++++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elt_A            4 GSSGKPYKCPQCSYASAIKANLNVHLRKHTGEK   36 (36)
T ss_dssp             SCCCCSEECSSSSCEESSHHHHHHHHHHHTCCC
T ss_pred             CCCCCCCCCCCCCcccCCHHHHHHHHHHccCCC
Confidence            567889999999999999999999999998864

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.06  E-value=1.2e-10  Score=55.18  Aligned_cols=43  Identities=14%  Similarity=0.126  Sum_probs=37.6

Q ss_pred             CCCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCC
Q psy8937           9 GGSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCP   51 (147)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~   51 (147)
                      ++...+.++++|.|++|++.|.....|..|++.|.+.++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            2 SSGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CCCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             CcccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            3456777889999999999999999999999988888999885

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.06  E-value=4.1e-10  Score=53.90  Aligned_cols=37  Identities=24%  Similarity=0.244  Sum_probs=32.2

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCC
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPL  124 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~  124 (147)
                      ++++|.|..|++.|.....|..|++.|.++++|.|++
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eom_A            9 GERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCCC
T ss_pred             CCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCCC
Confidence            6678889999999999999999999999999998863

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.05  E-value=1.1e-11  Score=63.44  Aligned_cols=53  Identities=9%  Similarity=0.291  Sum_probs=45.1

Q ss_pred             CCCCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCchhhhcChHHH
Q psy8937           8 PGGSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYL   63 (147)
Q Consensus         8 ~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l   63 (147)
                      ..+...++++++|.|++|++.|.....|.   +.|.+.++|.|+.|++.|....++
T Consensus         3 ~~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~~   55 (62)
T 1vd4_A            3 ETDERDSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDESA   55 (62)
T ss_dssp             CCCSSSCCSSSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTTC
T ss_pred             hhHHHHcCCCCCccCCCCCchhccHHHhH---hhcCCCCCEECCCCCCccccCccc
Confidence            34567788999999999999999988886   567778999999999999876654

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.05  E-value=1.2e-10  Score=52.65  Aligned_cols=33  Identities=24%  Similarity=0.368  Sum_probs=28.1

Q ss_pred             HhCCCcccCCCchhccCChHHHHhHHHhhhccC
Q psy8937         114 IHLPGILFCPLCQKCFKNKLYLRRHVISFHENA  146 (147)
Q Consensus       114 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  146 (147)
                      |.++++|.|++|++.|.....|..|+++|++++
T Consensus         4 h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~ek   36 (36)
T 2elr_A            4 GSSGKTHLCDMCGKKFKSKGTLKSHKLLHTADG   36 (36)
T ss_dssp             CCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSCC
T ss_pred             CCCCCCeecCcCCCCcCchHHHHHHHHHhcCCC
Confidence            466788999999999999999999999988764

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.05  E-value=1.3e-10  Score=59.65  Aligned_cols=45  Identities=13%  Similarity=0.078  Sum_probs=36.7

Q ss_pred             CCCCCCCCCcCCccccc--ccccCCChHHHHHHH-HHHhCCCcccCCC
Q psy8937          80 PGASKPLHSLDARYCKI--CGKHYSNSSNLKQHI-RLIHLPGILFCPL  124 (147)
Q Consensus        80 ~~~~~~~~~~~~~~C~~--c~~~~~~~~~l~~H~-~~~~~~~~~~C~~  124 (147)
                      ........+++||.|..  |+++|...+.|..|+ ++|.+++||.|..
T Consensus        16 ~~~~~~~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~   63 (73)
T 1x3c_A           16 LEFPTRYSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAE   63 (73)
T ss_dssp             CCCSSSSCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCS
T ss_pred             ccccccccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccccc
Confidence            34445566889999965  999999999999997 6899999999854

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=1e-10  Score=54.89  Aligned_cols=40  Identities=28%  Similarity=0.337  Sum_probs=34.0

Q ss_pred             CCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCC
Q psy8937          11 SKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFC   50 (147)
Q Consensus        11 ~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C   50 (147)
                      ...++++++|.|++|++.|.....|..|++.|.+.++|.|
T Consensus         3 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            3 SGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             ccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            4567788899999999999999999999988888888877

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.04  E-value=1.5e-10  Score=55.42  Aligned_cols=42  Identities=21%  Similarity=0.193  Sum_probs=37.8

Q ss_pred             CCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCC
Q psy8937          10 GSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCP   51 (147)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~   51 (147)
                      +...++++++|.|++|++.|.....|..|++.|.+.++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             cccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            445677899999999999999999999999999888999996

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.04  E-value=9.9e-11  Score=53.02  Aligned_cols=33  Identities=18%  Similarity=0.264  Sum_probs=29.0

Q ss_pred             HhCCCcccCCCchhccCChHHHHhHHHhhhccC
Q psy8937         114 IHLPGILFCPLCQKCFKNKLYLRRHVISFHENA  146 (147)
Q Consensus       114 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  146 (147)
                      |.++++|+|++|++.|.....|..|+++|++++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elq_A            4 GSSGKPFKCSLCEYATRSKSNLKAHMNRHSTEK   36 (36)
T ss_dssp             SCCCCSEECSSSSCEESCHHHHHHHHHHSSTTC
T ss_pred             CCCCCCccCCCCCchhCCHHHHHHHHHHhccCC
Confidence            567889999999999999999999999988764

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.03  E-value=8.2e-11  Score=53.31  Aligned_cols=33  Identities=24%  Similarity=0.387  Sum_probs=29.2

Q ss_pred             HhCCCcccCCCchhccCChHHHHhHHHhhhccC
Q psy8937         114 IHLPGILFCPLCQKCFKNKLYLRRHVISFHENA  146 (147)
Q Consensus       114 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  146 (147)
                      |.++++|.|.+|++.|.....|..|+++|.+++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elv_A            4 GSSGLLYDCHICERKFKNELDRDRHMLVHGDKW   36 (36)
T ss_dssp             SCCCCCEECSSSCCEESSHHHHHHHHTTTSTTC
T ss_pred             CCCCCCeECCCCCCccCCHHHHHHHHHHhcCCC
Confidence            567889999999999999999999999988764

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.03  E-value=1.2e-10  Score=53.12  Aligned_cols=34  Identities=21%  Similarity=0.322  Sum_probs=29.8

Q ss_pred             HHhCCCcccCCCchhccCCh-HHHHhHHHhhhccC
Q psy8937         113 LIHLPGILFCPLCQKCFKNK-LYLRRHVISFHENA  146 (147)
Q Consensus       113 ~~~~~~~~~C~~C~~~f~~~-~~l~~H~~~~h~~~  146 (147)
                      +|.++++|.|++|++.|... ..|..|+++|++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~k   37 (37)
T 2elp_A            3 SGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGVK   37 (37)
T ss_dssp             SCCCCCCEECSSSSCEECSSCHHHHHHHHHHHTCC
T ss_pred             CCCCCCCeECCCCChhhccCHHHHHHHHHhcCCCC
Confidence            36678899999999999998 99999999998864

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.03  E-value=1.9e-10  Score=54.52  Aligned_cols=42  Identities=14%  Similarity=0.210  Sum_probs=37.4

Q ss_pred             CCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCC
Q psy8937          10 GSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCP   51 (147)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~   51 (147)
                      +...++++++|.|++|++.|.....|..|++.|.+.++|.|.
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A            3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             CCcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            456677889999999999999999999999999888999884

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.02  E-value=3.4e-11  Score=59.83  Aligned_cols=50  Identities=16%  Similarity=0.264  Sum_probs=39.2

Q ss_pred             ccccCChHHHHHHHHHhcCCCCcCCCCchhhhcChHHHHHHHhhhcCCCC
Q psy8937          26 GKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTYTHTPS   75 (147)
Q Consensus        26 ~~~f~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~   75 (147)
                      ++.|.....|..|++.|.+.++|.|+.|++.|.....|..|+..|.++++
T Consensus         3 ~k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp   52 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKP   52 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSC
T ss_pred             ccccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCC
Confidence            35677777778888888888888888888888888888888887775543

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.02  E-value=1.7e-10  Score=52.20  Aligned_cols=33  Identities=27%  Similarity=0.372  Sum_probs=28.2

Q ss_pred             HhCCCcccCCCchhccCChHHHHhHHHhhhccC
Q psy8937         114 IHLPGILFCPLCQKCFKNKLYLRRHVISFHENA  146 (147)
Q Consensus       114 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  146 (147)
                      +.++++|.|+.|++.|.....|..|+++|++++
T Consensus         4 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2els_A            4 GSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK   36 (36)
T ss_dssp             TSCCCCEECTTTCCEESSHHHHHHHHHHHCCCC
T ss_pred             CCCCCCEECCCCCceeCCHHHHHHHHHHhCCCC
Confidence            456788999999999999999999999988764

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.02  E-value=8.6e-10  Score=56.68  Aligned_cols=34  Identities=15%  Similarity=0.108  Sum_probs=30.6

Q ss_pred             HhCCCcccCCC--chhccCChHHHHhHH-HhhhccCC
Q psy8937         114 IHLPGILFCPL--CQKCFKNKLYLRRHV-ISFHENAT  147 (147)
Q Consensus       114 ~~~~~~~~C~~--C~~~f~~~~~l~~H~-~~~h~~~~  147 (147)
                      ..++|||+|..  |++.|.+.+.|.+|+ ++|.+++|
T Consensus        22 ~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP   58 (73)
T 1x3c_A           22 YSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLP   58 (73)
T ss_dssp             SCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCC
T ss_pred             ccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCC
Confidence            46899999965  999999999999998 68999986

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.00  E-value=2.2e-10  Score=52.46  Aligned_cols=34  Identities=18%  Similarity=0.218  Sum_probs=26.4

Q ss_pred             HhCCCcccCC--CchhccCChHHHHhHHHhhhccCC
Q psy8937         114 IHLPGILFCP--LCQKCFKNKLYLRRHVISFHENAT  147 (147)
Q Consensus       114 ~~~~~~~~C~--~C~~~f~~~~~l~~H~~~~h~~~~  147 (147)
                      |.++++|.|.  .|++.|.+...|.+|+++|++++|
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~   36 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLK   36 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTT
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCC
Confidence            3567788888  488888888888888888887764

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=99.00  E-value=1.1e-10  Score=56.57  Aligned_cols=34  Identities=24%  Similarity=0.249  Sum_probs=27.3

Q ss_pred             HHhCCCcccCCCchhccCChHHHHhHHH-hhhccC
Q psy8937         113 LIHLPGILFCPLCQKCFKNKLYLRRHVI-SFHENA  146 (147)
Q Consensus       113 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~-~~h~~~  146 (147)
                      +|.++++|.|.+|++.|.....|..|++ +|.++.
T Consensus         1 ~Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~   35 (48)
T 3iuf_A            1 GEDRDKPYACDICGKRYKNRPGLSYHYAHSHLAEE   35 (48)
T ss_dssp             -CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC--
T ss_pred             CCCCCcCEECCCcCcccCCHHHHHHHhhhhcCCCC
Confidence            3677889999999999999999999998 887763

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=4.6e-10  Score=53.19  Aligned_cols=42  Identities=19%  Similarity=0.057  Sum_probs=35.3

Q ss_pred             CCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCC
Q psy8937          10 GSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCP   51 (147)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~   51 (147)
                      +...++++++|.|.+|++.|.....|..|++.|.+.++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~g   44 (44)
T 2epv_A            3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCCCC
T ss_pred             CCcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCCCC
Confidence            456677888999999999999999999999888888888763

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.99  E-value=2.9e-10  Score=54.16  Aligned_cols=37  Identities=22%  Similarity=0.223  Sum_probs=29.4

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCC
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPL  124 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~  124 (147)
                      ++++|.|..|++.|.....|..|+++|.++++|.|++
T Consensus         9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (45)
T 2epu_A            9 GQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSSG   45 (45)
T ss_dssp             SCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSCC
T ss_pred             CCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCCC
Confidence            5677788888888888888888888888888888763

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.97  E-value=3.4e-10  Score=54.62  Aligned_cols=38  Identities=21%  Similarity=0.107  Sum_probs=34.3

Q ss_pred             CcCCcccc--cccccCCChHHHHHHHHHHhCCCcccCCCc
Q psy8937          88 SLDARYCK--ICGKHYSNSSNLKQHIRLIHLPGILFCPLC  125 (147)
Q Consensus        88 ~~~~~~C~--~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C  125 (147)
                      ++++|.|.  .|++.|.....|..|+++|.++++|+|.+|
T Consensus         9 ~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            9 GEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            67888998  899999999999999999999999999887

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.97  E-value=4.9e-10  Score=48.27  Aligned_cols=30  Identities=17%  Similarity=0.325  Sum_probs=26.3

Q ss_pred             CcccCCCchhccCChHHHHhHHHhhhccCC
Q psy8937         118 GILFCPLCQKCFKNKLYLRRHVISFHENAT  147 (147)
Q Consensus       118 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~  147 (147)
                      ++|.|+.|++.|.....|..|+++|+++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~~~~   30 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK   30 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSCC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHccCCC
Confidence            478999999999999999999999988764

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.96  E-value=6.8e-11  Score=54.01  Aligned_cols=33  Identities=18%  Similarity=0.292  Sum_probs=29.2

Q ss_pred             HHhCCCcccCCCchhccCChHHHHhH-HHhhhcc
Q psy8937         113 LIHLPGILFCPLCQKCFKNKLYLRRH-VISFHEN  145 (147)
Q Consensus       113 ~~~~~~~~~C~~C~~~f~~~~~l~~H-~~~~h~~  145 (147)
                      .|.++++|+|+.|++.|.....|..| +++|.++
T Consensus         3 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            3 SGSSGHLYYCSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             SSSSSCEEECSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             ccCCCcCeECCCCCcccCCHHHHHHHHHHHccCc
Confidence            46788999999999999999999999 8888765

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.95  E-value=4.2e-10  Score=48.49  Aligned_cols=30  Identities=17%  Similarity=0.339  Sum_probs=26.5

Q ss_pred             CCcccCCCchhccCChHHHHhHHHhhhccC
Q psy8937         117 PGILFCPLCQKCFKNKLYLRRHVISFHENA  146 (147)
Q Consensus       117 ~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  146 (147)
                      +++|.|..|++.|.....|..|+++|++++
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   30 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHDTDK   30 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTCCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhccCC
Confidence            468999999999999999999999998864

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.94  E-value=5e-10  Score=51.02  Aligned_cols=33  Identities=18%  Similarity=0.266  Sum_probs=28.0

Q ss_pred             HhCCCcccCCC--chhccCChHHHHhHHHhhhccC
Q psy8937         114 IHLPGILFCPL--CQKCFKNKLYLRRHVISFHENA  146 (147)
Q Consensus       114 ~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~h~~~  146 (147)
                      |.++++|.|.+  |++.|.....|.+|+++|.+++
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~ek   37 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER   37 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            46788899984  9999999999999999988864

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.93  E-value=7.9e-10  Score=47.26  Aligned_cols=29  Identities=24%  Similarity=0.544  Sum_probs=24.8

Q ss_pred             CcccCCCchhccCChHHHHhHHHhhhccC
Q psy8937         118 GILFCPLCQKCFKNKLYLRRHVISFHENA  146 (147)
Q Consensus       118 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  146 (147)
                      ++|.|++|++.|.....|..|+++|++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   29 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHSCCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCCC
Confidence            47889999999999999999999988764

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.93  E-value=4.9e-10  Score=47.98  Aligned_cols=29  Identities=24%  Similarity=0.403  Sum_probs=25.8

Q ss_pred             CcccCCCchhccCChHHHHhHHHhhhccC
Q psy8937         118 GILFCPLCQKCFKNKLYLRRHVISFHENA  146 (147)
Q Consensus       118 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  146 (147)
                      ++|.|+.|++.|.....|..|+++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHENKK   29 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGSCC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcCCC
Confidence            57899999999999999999999998864

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.92  E-value=7.6e-10  Score=57.02  Aligned_cols=39  Identities=21%  Similarity=0.382  Sum_probs=26.1

Q ss_pred             CCcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCch
Q psy8937          87 HSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQ  126 (147)
Q Consensus        87 ~~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C~  126 (147)
                      .++++|.|..|++.|...+.|..|+++|.++. ..+.+++
T Consensus         9 ~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~-~~~~~~~   47 (66)
T 2epp_A            9 REAGILPCGLCGKVFTDANRLRQHEAQHGVTS-LQLGYID   47 (66)
T ss_dssp             CCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTS-CCCCSCC
T ss_pred             CCccCcCCCCCCCccCCHHHHHhhhhhhCCCc-ccccccc
Confidence            35677777777777777777777777777653 3344443

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.91  E-value=8.9e-10  Score=48.34  Aligned_cols=30  Identities=33%  Similarity=0.398  Sum_probs=26.6

Q ss_pred             CCcccCC--CchhccCChHHHHhHHHhhhccC
Q psy8937         117 PGILFCP--LCQKCFKNKLYLRRHVISFHENA  146 (147)
Q Consensus       117 ~~~~~C~--~C~~~f~~~~~l~~H~~~~h~~~  146 (147)
                      +++|.|.  .|++.|.....|..|+++|++++
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~   32 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEKA   32 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCCC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHccCCC
Confidence            4789998  89999999999999999998875

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.91  E-value=8.2e-10  Score=47.14  Aligned_cols=29  Identities=24%  Similarity=0.374  Sum_probs=24.9

Q ss_pred             CcccCCCchhccCChHHHHhHHHhhhccC
Q psy8937         118 GILFCPLCQKCFKNKLYLRRHVISFHENA  146 (147)
Q Consensus       118 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  146 (147)
                      ++|.|+.|++.|.....|..|+++|++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~   29 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIADG   29 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSCC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccCC
Confidence            47889999999999999999999988764

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.91  E-value=8.8e-10  Score=47.06  Aligned_cols=29  Identities=31%  Similarity=0.462  Sum_probs=25.3

Q ss_pred             CcccCCCchhccCChHHHHhHHHhhhccC
Q psy8937         118 GILFCPLCQKCFKNKLYLRRHVISFHENA  146 (147)
Q Consensus       118 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  146 (147)
                      ++|.|++|++.|.....|..|+++|++++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGEK   29 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTCC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCCC
Confidence            47889999999999999999999988874

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.89  E-value=5.3e-11  Score=52.57  Aligned_cols=30  Identities=23%  Similarity=0.371  Sum_probs=26.5

Q ss_pred             CcccCCCchhccCChHHHHhHHHhhhccCC
Q psy8937         118 GILFCPLCQKCFKNKLYLRRHVISFHENAT  147 (147)
Q Consensus       118 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~  147 (147)
                      ++|.|++|++.|.....|..|+++|.+++|
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~kp   30 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIVVA   30 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSSSS
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccCCC
Confidence            478999999999999999999999988875

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.88  E-value=6.9e-10  Score=47.13  Aligned_cols=28  Identities=21%  Similarity=0.280  Sum_probs=24.8

Q ss_pred             CCcccCCCchhccCChHHHHhHHHhhhc
Q psy8937         117 PGILFCPLCQKCFKNKLYLRRHVISFHE  144 (147)
Q Consensus       117 ~~~~~C~~C~~~f~~~~~l~~H~~~~h~  144 (147)
                      +++|.|++|++.|.....|..|+++|++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcCC
Confidence            4689999999999999999999998764

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=98.37  E-value=2.5e-10  Score=48.97  Aligned_cols=29  Identities=24%  Similarity=0.344  Sum_probs=25.1

Q ss_pred             CcccCCCchhccCChHHHHhHHHhhhccC
Q psy8937         118 GILFCPLCQKCFKNKLYLRRHVISFHENA  146 (147)
Q Consensus       118 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  146 (147)
                      ++|.|+.|++.|.....|..|+++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK   29 (29)
Confidence            47889999999999999999999988764

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.86  E-value=7.3e-10  Score=58.79  Aligned_cols=66  Identities=18%  Similarity=0.208  Sum_probs=56.5

Q ss_pred             cCCCCCCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCchhhhcChHHHHHHHhhhcCC
Q psy8937           5 RSVPGGSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTYTHT   73 (147)
Q Consensus         5 ~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~   73 (147)
                      ..+..+...+...+++.|..|++.|. ...|..|+ .+.+.+++.|+.|++.|.. ..|..|+..+...
T Consensus         3 ~~L~~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~-~~c~~~~~~C~~C~~~~~~-~~l~~H~~~c~~~   68 (75)
T 2d9k_A            3 SGSSGHEETECPLRLAVCQHCDLELS-ILKLKEHE-DYCGARTELCGNCGRNVLV-KDLKTHPEVCGRE   68 (75)
T ss_dssp             CCCSCCCCCCCCCCCEECSSSCCEEC-HHHHHHHH-HHHHHCEEECSSSCCEEET-TGGGTHHHHBTTB
T ss_pred             hHHHhhCcccCCCcccCCcccChHhh-HHHHHHHH-hHcCCCceEcccCCCcCcH-HHHHHHHHHccCC
Confidence            35666777788899999999999995 89999999 6888899999999999874 7899999877654

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=98.37  E-value=2.7e-10  Score=49.22  Aligned_cols=30  Identities=27%  Similarity=0.355  Sum_probs=25.7

Q ss_pred             CCcccCCCchhccCChHHHHhHHHhhhccC
Q psy8937         117 PGILFCPLCQKCFKNKLYLRRHVISFHENA  146 (147)
Q Consensus       117 ~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  146 (147)
                      +++|.|+.|++.|.....|..|+++|++++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~~k   30 (30)
T 2lvr_A            1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK   30 (30)
Confidence            367899999999999999999999988764

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.85  E-value=1.4e-09  Score=47.34  Aligned_cols=29  Identities=24%  Similarity=0.424  Sum_probs=25.5

Q ss_pred             CcccCC--CchhccCChHHHHhHHHhhhccC
Q psy8937         118 GILFCP--LCQKCFKNKLYLRRHVISFHENA  146 (147)
Q Consensus       118 ~~~~C~--~C~~~f~~~~~l~~H~~~~h~~~  146 (147)
                      +||.|+  .|++.|.....|..|+++|++++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~k   31 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCCC
Confidence            478997  89999999999999999998874

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.85  E-value=3e-09  Score=47.06  Aligned_cols=32  Identities=31%  Similarity=0.401  Sum_probs=29.8

Q ss_pred             CCcccccccccCCChHHHHHHHHHHhCCCccc
Q psy8937          90 DARYCKICGKHYSNSSNLKQHIRLIHLPGILF  121 (147)
Q Consensus        90 ~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~  121 (147)
                      ++|.|..|++.|...+.|..|+++|.++++|.
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            46889999999999999999999999999885

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.84  E-value=1.4e-09  Score=45.73  Aligned_cols=27  Identities=15%  Similarity=0.331  Sum_probs=23.2

Q ss_pred             CCcccCCCchhccCChHHHHhHHHhhh
Q psy8937         117 PGILFCPLCQKCFKNKLYLRRHVISFH  143 (147)
Q Consensus       117 ~~~~~C~~C~~~f~~~~~l~~H~~~~h  143 (147)
                      +++|.|+.|++.|.....|..|+++|+
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHcc
Confidence            468899999999999999999998863

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.84  E-value=2.1e-09  Score=49.41  Aligned_cols=36  Identities=11%  Similarity=0.289  Sum_probs=29.5

Q ss_pred             CccCcccccccccccCChHHHHHHHHHhcCCCCcCC
Q psy8937          15 HSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFC   50 (147)
Q Consensus        15 ~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C   50 (147)
                      +++++|.|.+|++.|.....|..|++.|.+.++|.+
T Consensus         2 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            2 WPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCCCceECCCCCcccCCHHHHHHHHHHcCCCcccee
Confidence            456788899999998888888888888777777765

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.83  E-value=9.6e-10  Score=46.35  Aligned_cols=27  Identities=19%  Similarity=0.396  Sum_probs=23.4

Q ss_pred             CCcccCCCchhccCChHHHHhHHHhhh
Q psy8937         117 PGILFCPLCQKCFKNKLYLRRHVISFH  143 (147)
Q Consensus       117 ~~~~~C~~C~~~f~~~~~l~~H~~~~h  143 (147)
                      +++|.|++|++.|.....|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTCC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhcC
Confidence            468999999999999999999998763

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.82  E-value=1.8e-09  Score=45.34  Aligned_cols=27  Identities=30%  Similarity=0.509  Sum_probs=23.1

Q ss_pred             cccCCCchhccCChHHHHhHHHhhhcc
Q psy8937         119 ILFCPLCQKCFKNKLYLRRHVISFHEN  145 (147)
Q Consensus       119 ~~~C~~C~~~f~~~~~l~~H~~~~h~~  145 (147)
                      +|.|.+|++.|.....|..|+++|+++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~~   27 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKNX   27 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC-
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCCC
Confidence            588999999999999999999998764

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.79  E-value=6.3e-09  Score=47.10  Aligned_cols=34  Identities=26%  Similarity=0.380  Sum_probs=27.5

Q ss_pred             ccCccCcccccccccccCChHHHHHHHHHhcCCC
Q psy8937          13 PLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPG   46 (147)
Q Consensus        13 ~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~   46 (147)
                      .++++++|.|++|++.|.....|..|++.|++.+
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~k   36 (37)
T 2elo_A            3 SGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEV   36 (37)
T ss_dssp             CCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSC
T ss_pred             CCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCC
Confidence            4567788888888888888888888888777654

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.77  E-value=1.2e-09  Score=52.46  Aligned_cols=36  Identities=22%  Similarity=0.322  Sum_probs=31.3

Q ss_pred             HHHHhCCCcccCC--CchhccCChHHHHhHHHhhhccC
Q psy8937         111 IRLIHLPGILFCP--LCQKCFKNKLYLRRHVISFHENA  146 (147)
Q Consensus       111 ~~~~~~~~~~~C~--~C~~~f~~~~~l~~H~~~~h~~~  146 (147)
                      ...|.++++|.|.  .|++.|.....|.+|+++|.+++
T Consensus        10 ~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A           10 YVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             SCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             HhccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCCC
Confidence            3457889999995  79999999999999999998874

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.75  E-value=3.4e-09  Score=47.84  Aligned_cols=24  Identities=29%  Similarity=0.499  Sum_probs=14.7

Q ss_pred             CcCCcccccccccCCChHHHHHHH
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHI  111 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~  111 (147)
                      +++||.|..|+++|...+.|..|+
T Consensus         5 gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            5 KPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CccCeECCCCCCccCCHhHccCcC
Confidence            556666666666666666666654

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.75  E-value=3.2e-09  Score=45.66  Aligned_cols=29  Identities=28%  Similarity=0.456  Sum_probs=24.6

Q ss_pred             CcccCCCchhccCChHHHHhH-HHhhhccC
Q psy8937         118 GILFCPLCQKCFKNKLYLRRH-VISFHENA  146 (147)
Q Consensus       118 ~~~~C~~C~~~f~~~~~l~~H-~~~~h~~~  146 (147)
                      ++|.|+.|++.|.....|..| +++|.+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~   30 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHSGNL   30 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSCCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHccCCC
Confidence            478999999999999999999 68887764

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.74  E-value=8.2e-09  Score=46.04  Aligned_cols=33  Identities=27%  Similarity=0.495  Sum_probs=24.9

Q ss_pred             cCccCcccccccccccCChHHHHHHHHHhcCCC
Q psy8937          14 LHSLDARYCKICGKHYSNSSNLKQHIRLIHLPG   46 (147)
Q Consensus        14 ~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~   46 (147)
                      +.++++|.|.+|++.|.....|..|++.|++.+
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~k   34 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIREVHGAA   34 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHTSCTT
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHHHHcCCC
Confidence            346677888888888888888888887766543

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.74  E-value=3.7e-10  Score=61.79  Aligned_cols=53  Identities=11%  Similarity=0.090  Sum_probs=45.0

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCchhccCChHHHHhHHHhhhc
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVISFHE  144 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  144 (147)
                      ++++|.|..|++.|...+.|..|+++|.++++|+|..|.    ....|..|.++|.+
T Consensus        22 ~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~----~~~~~~~~~~~~~~   74 (88)
T 1x6f_A           22 QNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQE----RRKQLLSKQKYADG   74 (88)
T ss_dssp             CCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCCS----CCCCCCCCCCCCCC
T ss_pred             CCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccchhh----hHHHHHhhhccccc
Confidence            678999999999999999999999999999999998765    44556677776655

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.72  E-value=8.3e-09  Score=46.07  Aligned_cols=33  Identities=15%  Similarity=0.309  Sum_probs=23.7

Q ss_pred             cCccCcccccccccccCChHHHHHHHHHhcCCC
Q psy8937          14 LHSLDARYCKICGKHYSNSSNLKQHIRLIHLPG   46 (147)
Q Consensus        14 ~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~   46 (147)
                      ++++++|.|.+|++.|.....|..|++.|.+.+
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~   34 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTL   34 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCC
Confidence            446677788888888888778887777665543

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=98.17  E-value=1.6e-09  Score=45.14  Aligned_cols=26  Identities=23%  Similarity=0.379  Sum_probs=22.1

Q ss_pred             CcccCCCchhccCChHHHHhHHHhhh
Q psy8937         118 GILFCPLCQKCFKNKLYLRRHVISFH  143 (147)
Q Consensus       118 ~~~~C~~C~~~f~~~~~l~~H~~~~h  143 (147)
                      ++|.|++|++.|.....|..|+++|+
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHHD   26 (26)
Confidence            47889999999999999999988863

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.69  E-value=1.9e-08  Score=45.48  Aligned_cols=33  Identities=18%  Similarity=0.351  Sum_probs=23.0

Q ss_pred             CCccCccCcccccccccccCChHHHHHHHHHhc
Q psy8937          11 SKPLHSLDARYCKICGKHYSNSSNLKQHIRLIH   43 (147)
Q Consensus        11 ~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~   43 (147)
                      .+.++++++|.|+.|++.|.....|..|++.|.
T Consensus         3 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   35 (37)
T 1p7a_A            3 TRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             SSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             CCcCCCCCCccCCCCCcccCcHHHHHHHHHHhc
Confidence            345566777777777777777777777776554

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.69  E-value=1.2e-08  Score=45.97  Aligned_cols=28  Identities=21%  Similarity=0.393  Sum_probs=25.1

Q ss_pred             HhCCCcccCCCchhccCChHHHHhHHHh
Q psy8937         114 IHLPGILFCPLCQKCFKNKLYLRRHVIS  141 (147)
Q Consensus       114 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~  141 (147)
                      +.+++||.|++|++.|.+.+.|.+|+.-
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~py   30 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQAY   30 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHHHH
T ss_pred             CCCccCeECCCCCCccCCHhHccCcCCe
Confidence            3579999999999999999999999843

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.62  E-value=3.7e-08  Score=44.11  Aligned_cols=33  Identities=21%  Similarity=0.176  Sum_probs=26.0

Q ss_pred             ccCccCcccccccccccCChHHHHHHHHHhcCC
Q psy8937          13 PLHSLDARYCKICGKHYSNSSNLKQHIRLIHLP   45 (147)
Q Consensus        13 ~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~   45 (147)
                      .+.++++|.|.+|++.|.....|..|++.|.++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHTGE   35 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHHccCC
Confidence            355678888888888888888888888876543

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.61  E-value=3.4e-08  Score=45.06  Aligned_cols=32  Identities=16%  Similarity=0.167  Sum_probs=24.9

Q ss_pred             cCccCcccccc--cccccCChHHHHHHHHHhcCC
Q psy8937          14 LHSLDARYCKI--CGKHYSNSSNLKQHIRLIHLP   45 (147)
Q Consensus        14 ~~~~~~~~C~~--C~~~f~~~~~l~~h~~~~~~~   45 (147)
                      .+++++|.|++  |++.|...+.|..|+++|.+.
T Consensus         4 ~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            4 GSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             SSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            34678888876  888888888888888877653

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.61  E-value=6.6e-09  Score=56.74  Aligned_cols=58  Identities=14%  Similarity=0.161  Sum_probs=45.8

Q ss_pred             CCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCchhhhcChHHHHHHHhhhc
Q psy8937          10 GSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTYT   71 (147)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~   71 (147)
                      +...++++++|.|++|++.|.....|..|++.|.+.++|.|..|.+    ...|..|++.+.
T Consensus        16 ~~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~~----~~~~~~~~~~~~   73 (88)
T 1x6f_A           16 GNGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQER----RKQLLSKQKYAD   73 (88)
T ss_dssp             CCCSCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCCSC----CCCCCCCCCCCC
T ss_pred             cccccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccchhhh----HHHHHhhhcccc
Confidence            3456778999999999999999999999999998889999987653    344555554333

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.60  E-value=4e-08  Score=44.06  Aligned_cols=32  Identities=25%  Similarity=0.273  Sum_probs=25.3

Q ss_pred             ccCccCcccccccccccCChHHHHHHHHHhcC
Q psy8937          13 PLHSLDARYCKICGKHYSNSSNLKQHIRLIHL   44 (147)
Q Consensus        13 ~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~   44 (147)
                      .+.++++|.|.+|++.|.....|..|++.|.+
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elq_A            3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRHST   34 (36)
T ss_dssp             SSCCCCSEECSSSSCEESCHHHHHHHHHHSST
T ss_pred             CCCCCCCccCCCCCchhCCHHHHHHHHHHhcc
Confidence            45577888888888888888888888876654

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.59  E-value=6.3e-08  Score=43.32  Aligned_cols=32  Identities=28%  Similarity=0.491  Sum_probs=25.2

Q ss_pred             cCccCcccccccccccCChHHHHHHHHHhcCC
Q psy8937          14 LHSLDARYCKICGKHYSNSSNLKQHIRLIHLP   45 (147)
Q Consensus        14 ~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~   45 (147)
                      +.++++|.|++|++.|.....|..|++.|.++
T Consensus         4 h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~e   35 (36)
T 2elr_A            4 GSSGKTHLCDMCGKKFKSKGTLKSHKLLHTAD   35 (36)
T ss_dssp             CCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSC
T ss_pred             CCCCCCeecCcCCCCcCchHHHHHHHHHhcCC
Confidence            45677888888888888888888888876643

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.58  E-value=4.3e-08  Score=44.25  Aligned_cols=33  Identities=24%  Similarity=0.246  Sum_probs=26.0

Q ss_pred             ccCccCcccccccccccCCh-HHHHHHHHHhcCC
Q psy8937          13 PLHSLDARYCKICGKHYSNS-SNLKQHIRLIHLP   45 (147)
Q Consensus        13 ~~~~~~~~~C~~C~~~f~~~-~~l~~h~~~~~~~   45 (147)
                      .++++++|.|++|++.|... ..|..|++.|.++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~   36 (37)
T 2elp_A            3 SGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGV   36 (37)
T ss_dssp             SCCCCCCEECSSSSCEECSSCHHHHHHHHHHHTC
T ss_pred             CCCCCCCeECCCCChhhccCHHHHHHHHHhcCCC
Confidence            45677888888888888888 8888888876643

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.58  E-value=2.2e-08  Score=42.47  Aligned_cols=27  Identities=22%  Similarity=0.458  Sum_probs=23.6

Q ss_pred             CcccCC--CchhccCChHHHHhHHHhhhc
Q psy8937         118 GILFCP--LCQKCFKNKLYLRRHVISFHE  144 (147)
Q Consensus       118 ~~~~C~--~C~~~f~~~~~l~~H~~~~h~  144 (147)
                      ++|.|+  .|++.|.....|..|+++|++
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGTC
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhCC
Confidence            468899  999999999999999998864

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.55  E-value=3.5e-08  Score=44.26  Aligned_cols=32  Identities=19%  Similarity=0.246  Sum_probs=23.4

Q ss_pred             ccCccCcccccccccccCChHHHHHHHHHhcC
Q psy8937          13 PLHSLDARYCKICGKHYSNSSNLKQHIRLIHL   44 (147)
Q Consensus        13 ~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~   44 (147)
                      .++++++|.|.+|++.|.....|..|++.|.+
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   34 (36)
T 2elv_A            3 SGSSGLLYDCHICERKFKNELDRDRHMLVHGD   34 (36)
T ss_dssp             CSCCCCCEECSSSCCEESSHHHHHHHHTTTST
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHHhcC
Confidence            34566778888888888888888888775543

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.55  E-value=6.3e-08  Score=43.38  Aligned_cols=32  Identities=22%  Similarity=0.328  Sum_probs=25.6

Q ss_pred             cCccCcccccccccccCChHHHHHHHHHhcCC
Q psy8937          14 LHSLDARYCKICGKHYSNSSNLKQHIRLIHLP   45 (147)
Q Consensus        14 ~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~   45 (147)
                      +.++++|.|++|++.|.....|..|++.|.+.
T Consensus         4 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2els_A            4 GSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNE   35 (36)
T ss_dssp             TSCCCCEECTTTCCEESSHHHHHHHHHHHCCC
T ss_pred             CCCCCCEECCCCCceeCCHHHHHHHHHHhCCC
Confidence            44677888999999998888888888876653

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.55  E-value=5.5e-08  Score=44.15  Aligned_cols=34  Identities=18%  Similarity=0.341  Sum_probs=26.9

Q ss_pred             CccCccccc--ccccccCChHHHHHHHHHhcCCCCc
Q psy8937          15 HSLDARYCK--ICGKHYSNSSNLKQHIRLIHLPGIL   48 (147)
Q Consensus        15 ~~~~~~~C~--~C~~~f~~~~~l~~h~~~~~~~~~~   48 (147)
                      +++++|.|.  .|++.|.....|..|++.|.+.++|
T Consensus         2 ~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            2 SDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             TTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            456788888  4888888888888888877776654

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.54  E-value=5.1e-08  Score=44.08  Aligned_cols=32  Identities=25%  Similarity=0.262  Sum_probs=24.1

Q ss_pred             ccCccCcccccccccccCChHHHHHH-HHHhcC
Q psy8937          13 PLHSLDARYCKICGKHYSNSSNLKQH-IRLIHL   44 (147)
Q Consensus        13 ~~~~~~~~~C~~C~~~f~~~~~l~~h-~~~~~~   44 (147)
                      .++++++|.|++|++.|.....|..| ++.|.+
T Consensus         3 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~   35 (37)
T 2elm_A            3 SGSSGHLYYCSQCHYSSITKNCLKRHVIQKHSN   35 (37)
T ss_dssp             SSSSSCEEECSSSSCEEECHHHHHHHHHHHTCC
T ss_pred             ccCCCcCeECCCCCcccCCHHHHHHHHHHHccC
Confidence            45677888888888888888888888 665543

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.48  E-value=2.1e-07  Score=47.84  Aligned_cols=33  Identities=24%  Similarity=0.490  Sum_probs=26.9

Q ss_pred             ccCccCcccccccccccCChHHHHHHHHHhcCC
Q psy8937          13 PLHSLDARYCKICGKHYSNSSNLKQHIRLIHLP   45 (147)
Q Consensus        13 ~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~   45 (147)
                      .+.++++|.|.+|++.|.....|..|+++|.+.
T Consensus         7 ~~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~   39 (66)
T 2epp_A            7 GLREAGILPCGLCGKVFTDANRLRQHEAQHGVT   39 (66)
T ss_dssp             SCCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTT
T ss_pred             CCCCccCcCCCCCCCccCCHHHHHhhhhhhCCC
Confidence            356778899999999999988898898877654

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.47  E-value=1.6e-07  Score=39.64  Aligned_cols=29  Identities=21%  Similarity=0.486  Sum_probs=26.0

Q ss_pred             CCcccccccccCCChHHHHHHHHHHhCCC
Q psy8937          90 DARYCKICGKHYSNSSNLKQHIRLIHLPG  118 (147)
Q Consensus        90 ~~~~C~~c~~~~~~~~~l~~H~~~~~~~~  118 (147)
                      ++|.|..|++.|...+.|..|++.|.+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   29 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHSCCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCCC
Confidence            46889999999999999999999998763

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.46  E-value=1.9e-07  Score=39.68  Aligned_cols=30  Identities=33%  Similarity=0.494  Sum_probs=26.7

Q ss_pred             CCcccccccccCCChHHHHHHHHHHhCCCc
Q psy8937          90 DARYCKICGKHYSNSSNLKQHIRLIHLPGI  119 (147)
Q Consensus        90 ~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~  119 (147)
                      ++|.|..|++.|...+.|..|++.|.++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~~~~   30 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK   30 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSCC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHccCCC
Confidence            367899999999999999999999988753

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.46  E-value=1.6e-07  Score=39.59  Aligned_cols=29  Identities=28%  Similarity=0.628  Sum_probs=26.2

Q ss_pred             CCcccccccccCCChHHHHHHHHHHhCCC
Q psy8937          90 DARYCKICGKHYSNSSNLKQHIRLIHLPG  118 (147)
Q Consensus        90 ~~~~C~~c~~~~~~~~~l~~H~~~~~~~~  118 (147)
                      ++|.|..|++.|...+.|..|++.|.+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~   29 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIADG   29 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSCC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccCC
Confidence            46889999999999999999999998764

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.46  E-value=7.3e-08  Score=46.32  Aligned_cols=32  Identities=28%  Similarity=0.414  Sum_probs=19.6

Q ss_pred             cCccCcccccccccccCChHHHHHHHH-HhcCC
Q psy8937          14 LHSLDARYCKICGKHYSNSSNLKQHIR-LIHLP   45 (147)
Q Consensus        14 ~~~~~~~~C~~C~~~f~~~~~l~~h~~-~~~~~   45 (147)
                      ++++++|.|.+|++.|.....|..|++ .|.+.
T Consensus         2 Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e   34 (48)
T 3iuf_A            2 EDRDKPYACDICGKRYKNRPGLSYHYAHSHLAE   34 (48)
T ss_dssp             CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC-
T ss_pred             CCCCcCEECCCcCcccCCHHHHHHHhhhhcCCC
Confidence            345666667667766666666666666 44443

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.44  E-value=1.3e-07  Score=39.88  Aligned_cols=29  Identities=34%  Similarity=0.692  Sum_probs=26.2

Q ss_pred             CCcccccccccCCChHHHHHHHHHHhCCC
Q psy8937          90 DARYCKICGKHYSNSSNLKQHIRLIHLPG  118 (147)
Q Consensus        90 ~~~~C~~c~~~~~~~~~l~~H~~~~~~~~  118 (147)
                      ++|.|..|++.|.....|..|++.|.+++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGEK   29 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTCC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCCC
Confidence            46889999999999999999999998764

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.42  E-value=9.4e-08  Score=40.69  Aligned_cols=30  Identities=17%  Similarity=0.504  Sum_probs=26.6

Q ss_pred             cCCcccccccccCCChHHHHHHHHHHhCCC
Q psy8937          89 LDARYCKICGKHYSNSSNLKQHIRLIHLPG  118 (147)
Q Consensus        89 ~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~  118 (147)
                      +++|.|..|++.|.....|..|++.|.+++
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   30 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHDTDK   30 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTCCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhccCC
Confidence            367899999999999999999999988763

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.41  E-value=9.6e-08  Score=40.41  Aligned_cols=29  Identities=28%  Similarity=0.335  Sum_probs=26.0

Q ss_pred             CCcccccccccCCChHHHHHHHHHHhCCC
Q psy8937          90 DARYCKICGKHYSNSSNLKQHIRLIHLPG  118 (147)
Q Consensus        90 ~~~~C~~c~~~~~~~~~l~~H~~~~~~~~  118 (147)
                      ++|.|..|++.|...+.|..|++.|.+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHENKK   29 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGSCC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcCCC
Confidence            46889999999999999999999988764

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.40  E-value=2.9e-07  Score=41.49  Aligned_cols=31  Identities=29%  Similarity=0.537  Sum_probs=28.1

Q ss_pred             CcCCcccc--cccccCCChHHHHHHHHHHhCCC
Q psy8937          88 SLDARYCK--ICGKHYSNSSNLKQHIRLIHLPG  118 (147)
Q Consensus        88 ~~~~~~C~--~c~~~~~~~~~l~~H~~~~~~~~  118 (147)
                      ++++|.|.  .|++.|...+.|..|+++|.+++
T Consensus         5 ~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~ek   37 (37)
T 1va1_A            5 KKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER   37 (37)
T ss_dssp             SCCCEECCSTTCCCEESCHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            67899998  49999999999999999998864

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.39  E-value=1.5e-07  Score=39.20  Aligned_cols=25  Identities=20%  Similarity=0.477  Sum_probs=18.3

Q ss_pred             CcccccccccccCChHHHHHHHHHh
Q psy8937          18 DARYCKICGKHYSNSSNLKQHIRLI   42 (147)
Q Consensus        18 ~~~~C~~C~~~f~~~~~l~~h~~~~   42 (147)
                      ++|.|..|++.|.....|..|++.|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            2 KPFSCSLCPQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHHC
T ss_pred             cCccCCCcChhhCCHHHHHHHHHHc
Confidence            5677777777777777777777643

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.37  E-value=3.7e-09  Score=46.38  Aligned_cols=31  Identities=29%  Similarity=0.446  Sum_probs=28.6

Q ss_pred             CCcccccccccCCChHHHHHHHHHHhCCCcc
Q psy8937          90 DARYCKICGKHYSNSSNLKQHIRLIHLPGIL  120 (147)
Q Consensus        90 ~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~  120 (147)
                      ++|.|..|++.|...+.|..|+++|.++++|
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            4688999999999999999999999999886

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.36  E-value=2.4e-07  Score=40.15  Aligned_cols=30  Identities=17%  Similarity=0.280  Sum_probs=26.6

Q ss_pred             cCCcccc--cccccCCChHHHHHHHHHHhCCC
Q psy8937          89 LDARYCK--ICGKHYSNSSNLKQHIRLIHLPG  118 (147)
Q Consensus        89 ~~~~~C~--~c~~~~~~~~~l~~H~~~~~~~~  118 (147)
                      +++|.|.  .|++.|...+.|..|+++|.+++
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~   32 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEKA   32 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCCC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHccCCC
Confidence            3678999  89999999999999999998763

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.35  E-value=1.1e-07  Score=39.67  Aligned_cols=24  Identities=17%  Similarity=0.451  Sum_probs=17.0

Q ss_pred             CcccccccccccCChHHHHHHHHH
Q psy8937          18 DARYCKICGKHYSNSSNLKQHIRL   41 (147)
Q Consensus        18 ~~~~C~~C~~~f~~~~~l~~h~~~   41 (147)
                      ++|.|++|++.|...+.|..|++.
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~   25 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMRG   25 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHTT
T ss_pred             cCcCCCCCCcccCCHHHHHHHHHh
Confidence            467777777777777777777654

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.67  E-value=6.4e-08  Score=41.05  Aligned_cols=29  Identities=28%  Similarity=0.536  Sum_probs=25.7

Q ss_pred             CCcccccccccCCChHHHHHHHHHHhCCC
Q psy8937          90 DARYCKICGKHYSNSSNLKQHIRLIHLPG  118 (147)
Q Consensus        90 ~~~~C~~c~~~~~~~~~l~~H~~~~~~~~  118 (147)
                      ++|.|..|++.|...+.|..|++.|.+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK   29 (29)
Confidence            46789999999999999999999988753

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.33  E-value=1.7e-07  Score=39.29  Aligned_cols=25  Identities=28%  Similarity=0.685  Sum_probs=16.8

Q ss_pred             CcccccccccccCChHHHHHHHHHh
Q psy8937          18 DARYCKICGKHYSNSSNLKQHIRLI   42 (147)
Q Consensus        18 ~~~~C~~C~~~f~~~~~l~~h~~~~   42 (147)
                      ++|.|++|++.|.....|..|++.|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h   26 (28)
T 2kvf_A            2 RPYSCSVCGKRFSLKHQMETHYRVH   26 (28)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHTTS
T ss_pred             cCccCCCCCcccCCHHHHHHHHHhc
Confidence            4567777777777777777776543

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.67  E-value=6.7e-08  Score=41.25  Aligned_cols=29  Identities=17%  Similarity=0.501  Sum_probs=26.0

Q ss_pred             CCcccccccccCCChHHHHHHHHHHhCCC
Q psy8937          90 DARYCKICGKHYSNSSNLKQHIRLIHLPG  118 (147)
Q Consensus        90 ~~~~C~~c~~~~~~~~~l~~H~~~~~~~~  118 (147)
                      ++|.|..|++.|...+.|..|++.|.+++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~~~k   30 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRIHTGEK   30 (30)
Confidence            57889999999999999999999988753

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.31  E-value=2.7e-07  Score=39.71  Aligned_cols=29  Identities=28%  Similarity=0.526  Sum_probs=25.7

Q ss_pred             CCcccc--cccccCCChHHHHHHHHHHhCCC
Q psy8937          90 DARYCK--ICGKHYSNSSNLKQHIRLIHLPG  118 (147)
Q Consensus        90 ~~~~C~--~c~~~~~~~~~l~~H~~~~~~~~  118 (147)
                      ++|.|.  .|++.|...+.|..|+++|.+++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~k   31 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCCC
Confidence            468897  99999999999999999988764

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=98.28  E-value=1.6e-06  Score=44.22  Aligned_cols=49  Identities=20%  Similarity=0.223  Sum_probs=42.5

Q ss_pred             ccccccCCChHHHHHHHH-HHhCCC------cccCC--CchhccCChHHHHhHHHhhh
Q psy8937          95 KICGKHYSNSSNLKQHIR-LIHLPG------ILFCP--LCQKCFKNKLYLRRHVISFH  143 (147)
Q Consensus        95 ~~c~~~~~~~~~l~~H~~-~~~~~~------~~~C~--~C~~~f~~~~~l~~H~~~~h  143 (147)
                      ..|++.|.+...|..|+. .|.+.+      +|.|.  .|++.+.....|..|++..|
T Consensus         7 ~~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~H   64 (64)
T 1zw8_A            7 KECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH   64 (64)
T ss_dssp             TTCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHHC
T ss_pred             CCCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccccC
Confidence            458999999999999985 676655      79996  89999999999999999876

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.27  E-value=3.2e-07  Score=38.01  Aligned_cols=23  Identities=26%  Similarity=0.631  Sum_probs=14.1

Q ss_pred             ccccccccccCChHHHHHHHHHh
Q psy8937          20 RYCKICGKHYSNSSNLKQHIRLI   42 (147)
Q Consensus        20 ~~C~~C~~~f~~~~~l~~h~~~~   42 (147)
                      |.|.+|++.|.....|..|++.|
T Consensus         2 ~~C~~C~k~f~~~~~l~~H~~~h   24 (27)
T 1znf_A            2 YKCGLCERSFVEKSALSRHQRVH   24 (27)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred             ccCCCCCCcCCCHHHHHHHHHHc
Confidence            55666666666666666666544

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.56  E-value=1.3e-07  Score=38.98  Aligned_cols=23  Identities=43%  Similarity=0.820  Sum_probs=15.1

Q ss_pred             cccccccccccCChHHHHHHHHH
Q psy8937          19 ARYCKICGKHYSNSSNLKQHIRL   41 (147)
Q Consensus        19 ~~~C~~C~~~f~~~~~l~~h~~~   41 (147)
                      +|.|+.|++.|.....|..|++.
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~~   24 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIRH   24 (26)
Confidence            56666666666666666666654

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.19  E-value=4.7e-07  Score=38.48  Aligned_cols=28  Identities=18%  Similarity=0.422  Sum_probs=24.4

Q ss_pred             CCcccccccccCCChHHHHHH-HHHHhCC
Q psy8937          90 DARYCKICGKHYSNSSNLKQH-IRLIHLP  117 (147)
Q Consensus        90 ~~~~C~~c~~~~~~~~~l~~H-~~~~~~~  117 (147)
                      ++|.|..|++.|...+.|..| ++.|.++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~   29 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHSGN   29 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHccCC
Confidence            468899999999999999999 6777765

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.14  E-value=7.7e-07  Score=42.38  Aligned_cols=35  Identities=17%  Similarity=0.164  Sum_probs=26.0

Q ss_pred             CCccCccCccccc--ccccccCChHHHHHHHHHhcCC
Q psy8937          11 SKPLHSLDARYCK--ICGKHYSNSSNLKQHIRLIHLP   45 (147)
Q Consensus        11 ~~~~~~~~~~~C~--~C~~~f~~~~~l~~h~~~~~~~   45 (147)
                      ...++++++|.|+  .|++.|...+.|..|++.|.++
T Consensus        10 ~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~e   46 (47)
T 1ncs_A           10 YVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             SCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTT
T ss_pred             HhccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCC
Confidence            3446677888885  6888888888888888876543

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.00  E-value=2.4e-06  Score=35.76  Aligned_cols=24  Identities=21%  Similarity=0.683  Sum_probs=16.7

Q ss_pred             ccccc--ccccccCChHHHHHHHHHh
Q psy8937          19 ARYCK--ICGKHYSNSSNLKQHIRLI   42 (147)
Q Consensus        19 ~~~C~--~C~~~f~~~~~l~~h~~~~   42 (147)
                      +|.|.  .|++.|...+.|..|++.|
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~~H   27 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKKIH   27 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHGGG
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHHHh
Confidence            56677  7777777777777776654

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.72  E-value=6.5e-06  Score=47.22  Aligned_cols=27  Identities=26%  Similarity=0.440  Sum_probs=15.5

Q ss_pred             hCCCcccCCCchhccCChHHHHhHHHh
Q psy8937         115 HLPGILFCPLCQKCFKNKLYLRRHVIS  141 (147)
Q Consensus       115 ~~~~~~~C~~C~~~f~~~~~l~~H~~~  141 (147)
                      .|+++|.|..|++.|.+...|..|+++
T Consensus        46 tGekpfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           46 PGGGLHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             GGGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             CCCcceEcccCcchhCCHHHHHHHHhh
Confidence            445556666666666666666655554

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.62  E-value=0.00014  Score=36.85  Aligned_cols=54  Identities=15%  Similarity=0.243  Sum_probs=38.9

Q ss_pred             CCchhhhcChHHHHHHHh-hhcCCCCccCCCCCCCCCCCcCCcccc--cccccCCChHHHHHHHHHH
Q psy8937          51 PLCQKCFKNKLYLRRHVG-TYTHTPSYRSVPGASKPLHSLDARYCK--ICGKHYSNSSNLKQHIRLI  114 (147)
Q Consensus        51 ~~C~~~f~~~~~l~~H~~-~~~~~~~~~~~~~~~~~~~~~~~~~C~--~c~~~~~~~~~l~~H~~~~  114 (147)
                      ..|++.|.+...|..|+. .|.+.+...          ....|.|.  .|++.+.....|..|++..
T Consensus         7 ~~C~~~f~~~~~l~~Hv~~~Hv~~~~~~----------~~~~~~C~W~~C~~~~~~~~~L~~Hir~~   63 (64)
T 1zw8_A            7 KECPESASSLFDLQRHLLKDHVSQDFKH----------PMEPLACNWEDCDFLGDDTASIVNHINAQ   63 (64)
T ss_dssp             TTCCCCCSSHHHHHHHHHHHSCCCCCCC----------SSCCEECCCSSCCCEESSHHHHHHHHHHH
T ss_pred             CCCCCcCCCHHHHHHHHHhhccCcccCC----------CCCCCEeeCCCCcCCCCChHHHHhhcccc
Confidence            448888888888888874 455442211          22467786  7999888899999999875

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=97.59  E-value=8.4e-05  Score=43.16  Aligned_cols=53  Identities=23%  Similarity=0.433  Sum_probs=43.4

Q ss_pred             cCCcccccccccCCChHHHHHHH--HHHh-------------------------------CCCcccCCCchhccCChHHH
Q psy8937          89 LDARYCKICGKHYSNSSNLKQHI--RLIH-------------------------------LPGILFCPLCQKCFKNKLYL  135 (147)
Q Consensus        89 ~~~~~C~~c~~~~~~~~~l~~H~--~~~~-------------------------------~~~~~~C~~C~~~f~~~~~l  135 (147)
                      .+++.|..|+..|.+.+.+..|.  +.|.                               +...|.|.+|++.|.+...|
T Consensus        30 ~~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~~  109 (127)
T 1zu1_A           30 FSDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGEDRSKCCPVCNMTFSSPVVA  109 (127)
T ss_dssp             BCSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCCSSCCSSCCCTTTEETTTTEECSSHHHH
T ss_pred             CCCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCCccccccCCCCCeEcCCCCCEeCCHHHH
Confidence            35678999999999999999998  3331                               13457799999999999999


Q ss_pred             HhHHHh
Q psy8937         136 RRHVIS  141 (147)
Q Consensus       136 ~~H~~~  141 (147)
                      ..|+..
T Consensus       110 ~~H~~g  115 (127)
T 1zu1_A          110 ESHYIG  115 (127)
T ss_dssp             HHHHTS
T ss_pred             HHHHCC
Confidence            999864

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.38  E-value=0.00026  Score=32.96  Aligned_cols=25  Identities=16%  Similarity=0.466  Sum_probs=21.9

Q ss_pred             ccCcccccccccccCChHHHHHHHH
Q psy8937          16 SLDARYCKICGKHYSNSSNLKQHIR   40 (147)
Q Consensus        16 ~~~~~~C~~C~~~f~~~~~l~~h~~   40 (147)
                      ....|.|+.|+..|.....|+.||.
T Consensus         9 ~~~~~~CPrCn~~f~~~~sLr~Hmk   33 (49)
T 2e72_A            9 DGGRKICPRCNAQFRVTEALRGHMC   33 (49)
T ss_dssp             CSSCCCCTTTCCCCSSHHHHHHHHH
T ss_pred             cCCceeCCcccccccchHHHHhhhh
Confidence            3478999999999999999999987

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.34  E-value=0.00014  Score=33.84  Aligned_cols=23  Identities=17%  Similarity=0.563  Sum_probs=14.7

Q ss_pred             CCcccccccccCCChHHHHHHHH
Q psy8937          90 DARYCKICGKHYSNSSNLKQHIR  112 (147)
Q Consensus        90 ~~~~C~~c~~~~~~~~~l~~H~~  112 (147)
                      ..|.|+.|+..|.....|+.|+.
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmk   33 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMC   33 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhh
Confidence            45566666666666666666655

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.09  E-value=0.00018  Score=41.30  Aligned_cols=31  Identities=29%  Similarity=0.470  Sum_probs=25.2

Q ss_pred             CCCccCccCcccccccccccCChHHHHHHHH
Q psy8937          10 GSKPLHSLDARYCKICGKHYSNSSNLKQHIR   40 (147)
Q Consensus        10 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~   40 (147)
                      ....+++.++|.|..|++.|.+...|..|++
T Consensus        41 ~ded~tGekpfyC~~C~K~F~~~~~L~~H~r   71 (124)
T 1zr9_A           41 FDPDLPGGGLHRCLACARYFIDSTNLKTHFR   71 (124)
T ss_dssp             SCSSSGGGGCSEETTTTEECSSHHHHHHHTT
T ss_pred             ccccCCCCcceEcccCcchhCCHHHHHHHHh
Confidence            3455667888999999999999999988876

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.84  E-value=0.0048  Score=35.71  Aligned_cols=25  Identities=16%  Similarity=0.426  Sum_probs=21.9

Q ss_pred             CcCCcccccccccCCChHHHHHHHH
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIR  112 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~  112 (147)
                      +.+.|.|..|+..|.+...+..|..
T Consensus        90 ~~~~~~C~~C~~~f~s~~~~~~H~~  114 (127)
T 1zu1_A           90 EDRSKCCPVCNMTFSSPVVAESHYI  114 (127)
T ss_dssp             CCTTTEETTTTEECSSHHHHHHHHT
T ss_pred             CCCCeEcCCCCCEeCCHHHHHHHHC
Confidence            4567889999999999999999874

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=96.73  E-value=0.0012  Score=28.80  Aligned_cols=29  Identities=21%  Similarity=0.382  Sum_probs=24.6

Q ss_pred             cCcccccccccccCChHHHHHHHHHhcCC
Q psy8937          17 LDARYCKICGKHYSNSSNLKQHIRLIHLP   45 (147)
Q Consensus        17 ~~~~~C~~C~~~f~~~~~l~~h~~~~~~~   45 (147)
                      ...|.|++|-+.|.+...|..|....|..
T Consensus         3 ~EGFiCP~C~~~l~s~~~L~~Hye~~H~~   31 (34)
T 3mjh_B            3 SEGFICPQCMKSLGSADELFKHYEAVHDA   31 (34)
T ss_dssp             SEEEECTTTCCEESSHHHHHHHHHHHTSS
T ss_pred             CcccCCcHHHHHcCCHHHHHHHHHhcccc
Confidence            34699999999999999999999887754

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=96.46  E-value=0.0023  Score=27.84  Aligned_cols=26  Identities=27%  Similarity=0.568  Sum_probs=20.1

Q ss_pred             ccCCCchhccCChHHHHhHHHhhhcc
Q psy8937         120 LFCPLCQKCFKNKLYLRRHVISFHEN  145 (147)
Q Consensus       120 ~~C~~C~~~f~~~~~l~~H~~~~h~~  145 (147)
                      |.|+.|.+.|.....|..|....|.+
T Consensus         6 FiCP~C~~~l~s~~~L~~Hye~~H~~   31 (34)
T 3mjh_B            6 FICPQCMKSLGSADELFKHYEAVHDA   31 (34)
T ss_dssp             EECTTTCCEESSHHHHHHHHHHHTSS
T ss_pred             cCCcHHHHHcCCHHHHHHHHHhcccc
Confidence            67888888888888888887777654

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=94.92  E-value=0.0058  Score=32.62  Aligned_cols=25  Identities=28%  Similarity=0.498  Sum_probs=11.7

Q ss_pred             ccccccccCCChHHHHHHHHHHhCCCcc
Q psy8937          93 YCKICGKHYSNSSNLKQHIRLIHLPGIL  120 (147)
Q Consensus        93 ~C~~c~~~~~~~~~l~~H~~~~~~~~~~  120 (147)
                      .|..||+.|..   |..|+..+++..+.
T Consensus        23 iClecGK~fK~---LkRHL~~~hgltpe   47 (87)
T 2jsp_A           23 VCLECGGSFKS---LKRHLTTHHSMTPE   47 (87)
T ss_dssp             ECTBTCCEESB---HHHHHHHTTCSCHH
T ss_pred             EecccchhhHH---HHHHHHHccCCCHH
Confidence            45555555442   33555554444443

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=94.82  E-value=0.036  Score=24.18  Aligned_cols=22  Identities=18%  Similarity=0.338  Sum_probs=12.3

Q ss_pred             cccCCCchhccCChHHHHhHHH
Q psy8937         119 ILFCPLCQKCFKNKLYLRRHVI  140 (147)
Q Consensus       119 ~~~C~~C~~~f~~~~~l~~H~~  140 (147)
                      .+.|..|+..|.+...+..|.+
T Consensus         8 ~~~C~~C~IsF~~l~ty~aHKk   29 (36)
T 1fu9_A            8 KKYCSTCDISFNYVKTYLAHKQ   29 (36)
T ss_dssp             CSEETTTTEECSSHHHHHHHHH
T ss_pred             cCeeccccceehhhHHHhhhhe
Confidence            3455555555555555555544

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=94.12  E-value=0.015  Score=35.22  Aligned_cols=53  Identities=13%  Similarity=0.148  Sum_probs=41.3

Q ss_pred             CcccccccccCCChHHHHHHHHHHhCCCcccCCCchhccCChHHHHhHHHhhhcc
Q psy8937          91 ARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVISFHEN  145 (147)
Q Consensus        91 ~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~  145 (147)
                      +..|+.|+..+ ....|..|....-..+...|+.|+..+... .|..|..+..|+
T Consensus       110 ~v~C~~C~~~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~~~~-~l~~H~~~~~~~  162 (170)
T 3hcs_A          110 LMDCPQCQRPF-QKFHINIHILKDCPRRQVSCDNCAASMAFE-DKEIHDQNCPLA  162 (170)
T ss_dssp             EEECTTTCCEE-EGGGHHHHHHHTCTTCEEECTTTCCEEEGG-GHHHHHTTCCC-
T ss_pred             eeECCCCChHH-HHHHHHHHhhhhCCCCCeECCCCCCccCHH-HHHhHHHhCcCh
Confidence            34588888876 677788998877788888999999888654 678998877765

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=93.38  E-value=0.061  Score=22.67  Aligned_cols=23  Identities=26%  Similarity=0.628  Sum_probs=15.4

Q ss_pred             cCCCchhccCChHHHHhHHHhhh
Q psy8937         121 FCPLCQKCFKNKLYLRRHVISFH  143 (147)
Q Consensus       121 ~C~~C~~~f~~~~~l~~H~~~~h  143 (147)
                      .|..|.+.++...+|..|++.-|
T Consensus        11 hcrfckkkysdvknlikhire~h   33 (37)
T 2elu_A           11 HCRFCKKKYSDVKNLIKHIRDAH   33 (37)
T ss_dssp             EETTTTEECSSHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc
Confidence            36667777777777777766544

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=93.25  E-value=0.11  Score=27.75  Aligned_cols=31  Identities=26%  Similarity=0.385  Sum_probs=23.6

Q ss_pred             ccCccCcccccccccccCChHHHHHHHHHhcCCC
Q psy8937          13 PLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPG   46 (147)
Q Consensus        13 ~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~   46 (147)
                      .....+..+|-+||+.|..   |..|+..+|+-.
T Consensus        15 ksi~~d~iiClecGK~fK~---LkRHL~~~hglt   45 (87)
T 2jsp_A           15 KSVQDDHIVCLECGGSFKS---LKRHLTTHHSMT   45 (87)
T ss_dssp             TTBCSSCEECTBTCCEESB---HHHHHHHTTCSC
T ss_pred             hccCCCceEecccchhhHH---HHHHHHHccCCC
Confidence            3345677899999999985   779999766653

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=92.97  E-value=0.043  Score=33.21  Aligned_cols=54  Identities=13%  Similarity=0.167  Sum_probs=38.3

Q ss_pred             CcccccccccccCChHHHHHHHHHhcCCCCcCCCCchhhhcChHHHHHHHhhhcCC
Q psy8937          18 DARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTYTHT   73 (147)
Q Consensus        18 ~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~   73 (147)
                      .+..|+.|+..+ ....|..|....-..+...|+.|+..+... .|..|.....+.
T Consensus       109 ~~v~C~~C~~~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~~~~-~l~~H~~~~~~~  162 (170)
T 3hcs_A          109 ALMDCPQCQRPF-QKFHINIHILKDCPRRQVSCDNCAASMAFE-DKEIHDQNCPLA  162 (170)
T ss_dssp             SEEECTTTCCEE-EGGGHHHHHHHTCTTCEEECTTTCCEEEGG-GHHHHHTTCCC-
T ss_pred             eeeECCCCChHH-HHHHHHHHhhhhCCCCCeECCCCCCccCHH-HHHhHHHhCcCh
Confidence            345688888877 556788888655666777899998877654 478888766554

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=92.44  E-value=0.14  Score=24.54  Aligned_cols=19  Identities=37%  Similarity=0.936  Sum_probs=15.2

Q ss_pred             ccccccccCCChHHHHHHH
Q psy8937          93 YCKICGKHYSNSSNLKQHI  111 (147)
Q Consensus        93 ~C~~c~~~~~~~~~l~~H~  111 (147)
                      .|..|+..|.....++.|+
T Consensus        15 eC~lC~vkYs~r~slqDHI   33 (55)
T 2yrk_A           15 ECTLCGVKYSARLSIRDHI   33 (55)
T ss_dssp             CCTTTTCCCCSSSCHHHHH
T ss_pred             cccccCcccccccchhhhh
Confidence            5888888888888887776

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=92.29  E-value=0.032  Score=26.74  Aligned_cols=22  Identities=32%  Similarity=0.676  Sum_probs=19.8

Q ss_pred             ccCCCchhccCChHHHHhHHHh
Q psy8937         120 LFCPLCQKCFKNKLYLRRHVIS  141 (147)
Q Consensus       120 ~~C~~C~~~f~~~~~l~~H~~~  141 (147)
                      -.|..|+..|..+..++.|+.+
T Consensus        14 ~eC~lC~vkYs~r~slqDHIFs   35 (55)
T 2yrk_A           14 PECTLCGVKYSARLSIRDHIFS   35 (55)
T ss_dssp             SCCTTTTCCCCSSSCHHHHHTS
T ss_pred             ccccccCcccccccchhhhhcc
Confidence            5799999999999999999864

>2djr_A Zinc finger BED domain-containing protein 2; C2H2 type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.79  E-value=0.048  Score=28.42  Aligned_cols=26  Identities=27%  Similarity=0.528  Sum_probs=16.1

Q ss_pred             ccCCCchhccC-------ChHHHHhHHHhhhcc
Q psy8937         120 LFCPLCQKCFK-------NKLYLRRHVISFHEN  145 (147)
Q Consensus       120 ~~C~~C~~~f~-------~~~~l~~H~~~~h~~  145 (147)
                      ..|..|++.++       .-+.|.+|++..|.+
T Consensus        29 A~Ck~C~k~ls~g~~s~~GTS~L~rHL~~~H~~   61 (76)
T 2djr_A           29 ATCRLCGRQVSRGPGVNVGTTALWKHLKSMHRE   61 (76)
T ss_dssp             EEESSSCCBCCCCSSCCSSSCHHHHHHHHTTHH
T ss_pred             EECCCCCCccCCCCCCCCchHHHHHHHHHHCHH
Confidence            45666666665       225777777777653

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=91.63  E-value=0.07  Score=27.85  Aligned_cols=50  Identities=22%  Similarity=0.355  Sum_probs=36.6

Q ss_pred             ccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCchhhhcChHHHHHHH
Q psy8937          16 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHV   67 (147)
Q Consensus        16 ~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~   67 (147)
                      ..-.|.|..||..+.. ..+..|...-.+...+.|..|+..|.... .+.|.
T Consensus         7 ~MV~F~C~~Cgd~lKK-~kv~~H~~~Cr~~~~~SCIDC~~~F~~~~-y~~Ht   56 (79)
T 1wjv_A            7 GMVFFTCNACGESVKK-IQVEKHVSNCRNCECLSCIDCGKDFWGDD-YKSHV   56 (79)
T ss_dssp             CCCEEEESSSCCEEET-THHHHHHHHCTTCCEEEETTTTEEEEGGG-TTTCC
T ss_pred             ceeEEEcCCCCCeeec-ccchhHHhhCCCCCcEEecccCCeeCCCC-EeCEe
Confidence            3446899999988765 56888976444446899999999998643 55554

>2ct5_A Zinc finger BED domain containing protein 1; DREF homolog, putative C-like transposable element, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.6

Probab=91.49  E-value=0.081  Score=27.34  Aligned_cols=12  Identities=25%  Similarity=0.171  Sum_probs=5.9

Q ss_pred             HHHHhHHHhhhc
Q psy8937         133 LYLRRHVISFHE  144 (147)
Q Consensus       133 ~~l~~H~~~~h~  144 (147)
                      ++|.+|++.+|+
T Consensus        46 SnL~rHL~~~H~   57 (73)
T 2ct5_A           46 SNLSYHLEKNHP   57 (73)
T ss_dssp             HHHHHHHHHSCH
T ss_pred             HhHHHHHHHHCH
Confidence            345555555443

>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A

Probab=91.44  E-value=0.12  Score=21.28  Aligned_cols=22  Identities=32%  Similarity=0.472  Sum_probs=16.4

Q ss_pred             cccCCCchhccCChHHHHhHHH
Q psy8937         119 ILFCPLCQKCFKNKLYLRRHVI  140 (147)
Q Consensus       119 ~~~C~~C~~~f~~~~~l~~H~~  140 (147)
                      .|.|++|.........|..|..
T Consensus         3 k~~CpvCk~q~Pd~kt~~~H~e   24 (28)
T 2jvx_A            3 DFCCPKCQYQAPDMDTLQIHVM   24 (28)
T ss_dssp             CEECTTSSCEESSHHHHHHHHH
T ss_pred             cccCccccccCcChHHHHHHHH
Confidence            3678888888888877777753

>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain, PRMT3, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.37.1.5

Probab=90.35  E-value=0.19  Score=28.66  Aligned_cols=29  Identities=17%  Similarity=0.415  Sum_probs=23.2

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhC
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHL  116 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~  116 (147)
                      ++.+..|-.|...|.+...+..|++..++
T Consensus        12 e~~~~~CLFCd~~~~s~~~~l~H~k~~H~   40 (121)
T 1wir_A           12 GRQHTPCLFCDRLFASAEETFSHCKLEHQ   40 (121)
T ss_dssp             CCCCEECSSSCCEESSHHHHHHHHHHSSC
T ss_pred             CCCceeEecCCCcccCHHHHHHHHHHhcC
Confidence            45567788888888888888888887665

>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}

Probab=90.02  E-value=0.013  Score=30.51  Aligned_cols=40  Identities=23%  Similarity=0.492  Sum_probs=25.0

Q ss_pred             ccccccccCCChHHHHHHHHH---------------HhCCCcccCCCchhccCCh
Q psy8937          93 YCKICGKHYSNSSNLKQHIRL---------------IHLPGILFCPLCQKCFKNK  132 (147)
Q Consensus        93 ~C~~c~~~~~~~~~l~~H~~~---------------~~~~~~~~C~~C~~~f~~~  132 (147)
                      +|+.||....+..-+.+.+..               ...+-.|+|+.||..|..+
T Consensus        10 ~~PlCG~~L~W~eLIeQML~~en~~ei~kDr~~Fl~~~e~F~FkCP~CgEEFyG~   64 (95)
T 2k5c_A           10 KCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCPVCGEEFYGK   64 (95)
T ss_dssp             ECSSSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECTTTCCEEETT
T ss_pred             cCCcCCCccCHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHhhcCCCccHHHhcc
Confidence            599999886654433221110               1124569999999988755

>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...

Probab=89.48  E-value=0.19  Score=25.72  Aligned_cols=30  Identities=20%  Similarity=0.300  Sum_probs=22.6

Q ss_pred             ccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCchhh
Q psy8937          16 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKC   56 (147)
Q Consensus        16 ~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C~~~   56 (147)
                      ..-.|.|..||..|...           ......|+.||..
T Consensus        25 ~~v~Y~C~~CG~~~e~~-----------~~d~irCp~CG~R   54 (70)
T 1twf_L           25 ATLKYICAECSSKLSLS-----------RTDAVRCKDCGHR   54 (70)
T ss_dssp             CCCCEECSSSCCEECCC-----------TTSTTCCSSSCCC
T ss_pred             ceEEEECCCCCCcceeC-----------CCCCccCCCCCce
Confidence            45679999999998764           2345689999973

>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X

Probab=89.30  E-value=0.15  Score=23.67  Aligned_cols=30  Identities=20%  Similarity=0.431  Sum_probs=19.2

Q ss_pred             CcccccccccCCChHHHHHHHHHHhCCCcccCCCchhc
Q psy8937          91 ARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKC  128 (147)
Q Consensus        91 ~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C~~~  128 (147)
                      .|.|-.||+.|.....        .--...+|+.||+.
T Consensus         3 iY~C~rCg~~fs~~el--------~~lP~IrCpyCGyr   32 (48)
T 4ayb_P            3 VYRCGKCWKTFTDEQL--------KVLPGVRCPYCGYK   32 (48)
T ss_dssp             --CCCCTTTTCCCCCS--------CCCSSSCCTTTCCS
T ss_pred             EEEeeccCCCccHHHH--------hhCCCcccCccCcE
Confidence            4779999999887642        01133779999964

>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82

Probab=89.18  E-value=0.17  Score=28.02  Aligned_cols=29  Identities=21%  Similarity=0.548  Sum_probs=17.8

Q ss_pred             cCcccccccccccCChHHHHHHHHHhcCCCCcCCCCchhh
Q psy8937          17 LDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKC   56 (147)
Q Consensus        17 ~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C~~~   56 (147)
                      ..++.|..||..|.           -...+|-.||.|+..
T Consensus        65 v~p~~C~~CG~~F~-----------~~~~kPsrCP~CkSe   93 (105)
T 2gmg_A           65 IKPAQCRKCGFVFK-----------AEINIPSRCPKCKSE   93 (105)
T ss_dssp             ECCCBBTTTCCBCC-----------CCSSCCSSCSSSCCC
T ss_pred             EECcChhhCcCeec-----------ccCCCCCCCcCCCCC
Confidence            35677777777771           123356677777654

>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain, PRMT3, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.37.1.5

Probab=87.87  E-value=0.73  Score=26.28  Aligned_cols=31  Identities=19%  Similarity=0.412  Sum_probs=27.3

Q ss_pred             CccCcccccccccccCChHHHHHHHHHhcCC
Q psy8937          15 HSLDARYCKICGKHYSNSSNLKQHIRLIHLP   45 (147)
Q Consensus        15 ~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~   45 (147)
                      .+..+.+|-.|...|.....+..|++..|.-
T Consensus        11 ~e~~~~~CLFCd~~~~s~~~~l~H~k~~H~F   41 (121)
T 1wir_A           11 HGRQHTPCLFCDRLFASAEETFSHCKLEHQF   41 (121)
T ss_dssp             CCCCCEECSSSCCEESSHHHHHHHHHHSSCC
T ss_pred             CCCCceeEecCCCcccCHHHHHHHHHHhcCC
Confidence            4567899999999999999999999988764

>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*

Probab=86.77  E-value=0.54  Score=29.43  Aligned_cols=26  Identities=23%  Similarity=0.491  Sum_probs=21.3

Q ss_pred             cCcccccccccccCC-hHHHHHHHHHh
Q psy8937          17 LDARYCKICGKHYSN-SSNLKQHIRLI   42 (147)
Q Consensus        17 ~~~~~C~~C~~~f~~-~~~l~~h~~~~   42 (147)
                      ..+++|..|+..|.+ ...|+.|+..+
T Consensus       167 ~~~L~C~~C~~~f~n~~~~LK~HL~~e  193 (204)
T 3sp4_A          167 QEDLKCWRCGETFGRHFTKLKAHLQEE  193 (204)
T ss_dssp             GSCCBCTTTCCBCTTCHHHHHHHHHHH
T ss_pred             CCCceeCCCCchhhcccHHHHHHHHHH
Confidence            558899999999987 88888888754

>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A

Probab=86.39  E-value=0.2  Score=31.30  Aligned_cols=27  Identities=26%  Similarity=0.621  Sum_probs=21.3

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCchh
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQK  127 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C~~  127 (147)
                      ....|.|..||..+.-             ..|..||+|+-
T Consensus       168 ~~~~~~C~~CG~i~~g-------------~~p~~CP~C~~  194 (202)
T 1yuz_A          168 DDKFHLCPICGYIHKG-------------EDFEKCPICFR  194 (202)
T ss_dssp             SCCEEECSSSCCEEES-------------SCCSBCTTTCC
T ss_pred             CCcEEEECCCCCEEcC-------------cCCCCCCCCCC
Confidence            4467899999988752             46799999984

>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}

Probab=86.03  E-value=0.44  Score=23.76  Aligned_cols=32  Identities=16%  Similarity=0.317  Sum_probs=24.1

Q ss_pred             cCcccccccccccCChHHHHHHHHHhcCCCCcCCCCchhhhcC
Q psy8937          17 LDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKN   59 (147)
Q Consensus        17 ~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~   59 (147)
                      ...|.|..|+..+...           ...+.+|+.||.....
T Consensus        19 ~v~Y~C~~Cg~~~~l~-----------~~~~iRC~~CG~RILy   50 (63)
T 3h0g_L           19 TMIYLCADCGARNTIQ-----------AKEVIRCRECGHRVMY   50 (63)
T ss_dssp             CCCCBCSSSCCBCCCC-----------SSSCCCCSSSCCCCCB
T ss_pred             CeEEECCCCCCeeecC-----------CCCceECCCCCcEEEE
Confidence            5679999999988643           2467899999966543

>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*

Probab=85.93  E-value=0.59  Score=29.27  Aligned_cols=26  Identities=23%  Similarity=0.248  Sum_probs=21.3

Q ss_pred             CCcccCCCchhccCC-hHHHHhHHHhh
Q psy8937         117 PGILFCPLCQKCFKN-KLYLRRHVISF  142 (147)
Q Consensus       117 ~~~~~C~~C~~~f~~-~~~l~~H~~~~  142 (147)
                      ..+.+|..|+..|.. -..|..|+..+
T Consensus       167 ~~~L~C~~C~~~f~n~~~~LK~HL~~e  193 (204)
T 3sp4_A          167 QEDLKCWRCGETFGRHFTKLKAHLQEE  193 (204)
T ss_dssp             GSCCBCTTTCCBCTTCHHHHHHHHHHH
T ss_pred             CCCceeCCCCchhhcccHHHHHHHHHH
Confidence            457889999999976 88888888765

>2k9h_A Glycoprotein; hantavirus, zinc finger, CCHC, metal binding protein; NMR {Andes virus}

Probab=85.01  E-value=0.76  Score=22.00  Aligned_cols=21  Identities=19%  Similarity=0.436  Sum_probs=10.1

Q ss_pred             CCCCchhhhcChHHHHHHHhh
Q psy8937          49 FCPLCQKCFKNKLYLRRHVGT   69 (147)
Q Consensus        49 ~C~~C~~~f~~~~~l~~H~~~   69 (147)
                      .|.+|.-...+...|..|...
T Consensus         5 vC~~C~~ECET~kEl~~H~~s   25 (57)
T 2k9h_A            5 VCDVCHHECETAKELESHRQS   25 (57)
T ss_dssp             BCTTTCCBCSSTTTHHHHHHH
T ss_pred             hhhHHHhhhhhHHHHHHHhcc
Confidence            344444444444455555443

>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=84.95  E-value=0.64  Score=24.57  Aligned_cols=39  Identities=21%  Similarity=0.341  Sum_probs=27.1

Q ss_pred             CCCCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCchhhhcC
Q psy8937           9 GGSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKN   59 (147)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~   59 (147)
                      +...+..+...-.|..|+..|...            .+.+.|..||+.|-.
T Consensus         4 ~~~~W~pd~~~~~C~~C~~~F~~~------------~RrHHCR~CG~vfC~   42 (84)
T 1x4u_A            4 GSSGRYPTNNFGNCTGCSATFSVL------------KKRRSCSNCGNSFCS   42 (84)
T ss_dssp             CCCCSCSCCCCSSCSSSCCCCCSS------------SCCEECSSSCCEECT
T ss_pred             CCCccccCCCCCcCcCcCCccccc------------hhhhhhcCCCcEECh
Confidence            445566667778899999999653            344567777777654

>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A

Probab=83.99  E-value=0.48  Score=28.78  Aligned_cols=27  Identities=26%  Similarity=0.597  Sum_probs=21.0

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCchh
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQK  127 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C~~  127 (147)
                      ....|.|..||..+.             ++.|-.||+|+-
T Consensus       135 ~~~~~~C~~CG~i~~-------------~~~p~~CP~Cg~  161 (170)
T 3pwf_A          135 IKKVYICPICGYTAV-------------DEAPEYCPVCGA  161 (170)
T ss_dssp             CSCEEECTTTCCEEE-------------SCCCSBCTTTCC
T ss_pred             CCCeeEeCCCCCeeC-------------CCCCCCCCCCCC
Confidence            456789999999875             245669999993

>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}

Probab=83.86  E-value=0.44  Score=21.29  Aligned_cols=24  Identities=21%  Similarity=0.455  Sum_probs=14.3

Q ss_pred             ccCcccccccccccCChHHHHHHHH
Q psy8937          16 SLDARYCKICGKHYSNSSNLKQHIR   40 (147)
Q Consensus        16 ~~~~~~C~~C~~~f~~~~~l~~h~~   40 (147)
                      ....+.|+.|++.+.. ..+..|.-
T Consensus         6 ~~~~~~C~~C~~~i~~-~~~~EH~D   29 (39)
T 2i5o_A            6 AEDQVPCEKCGSLVPV-WDMPEHMD   29 (39)
T ss_dssp             CCCEEECTTTCCEEEG-GGHHHHHH
T ss_pred             cCCCcccccccCcCCc-ccccchhh
Confidence            3455677777777665 34455554

>2czr_A TBP-interacting protein; tata-binding protein (TBP), hyperthermophilic archaeon, Zn-finger motif, transcription; 2.30A {Thermococcus kodakarensis} SCOP: c.52.4.1

Probab=81.20  E-value=0.37  Score=29.36  Aligned_cols=38  Identities=24%  Similarity=0.368  Sum_probs=26.7

Q ss_pred             hHHHHHHHHHHhCC-------CcccCCCchhccCChHHHHhHHHhh
Q psy8937         104 SSNLKQHIRLIHLP-------GILFCPLCQKCFKNKLYLRRHVISF  142 (147)
Q Consensus       104 ~~~l~~H~~~~~~~-------~~~~C~~C~~~f~~~~~l~~H~~~~  142 (147)
                      ...|..|+....-.       +-|+|..||+ +..-.+|..||+.|
T Consensus       132 GgrlieHlK~~~~~GqDyvFWQFYKCe~CgK-YvDId~~~~Hlk~H  176 (226)
T 2czr_A          132 GAALVNHIKNNALAGQDYIFWQFYKCEECGK-YVDIENLEAHLREH  176 (226)
T ss_dssp             HHHHHHHHHTTCCBTTTEEEEEEEECTTTCC-EEEGGGHHHHHHTT
T ss_pred             hHHHHHHHHhccccCcceEEEEEEehhhcCc-eecHHHHHHHHHHc
Confidence            56777887653321       2388999997 45566889999986

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=80.92  E-value=1.5  Score=24.04  Aligned_cols=45  Identities=16%  Similarity=0.391  Sum_probs=26.8

Q ss_pred             cccccccCCChHHHHHHHHHHhCCCcccCC---CchhccCChHHHHhHHHhhhcc
Q psy8937          94 CKICGKHYSNSSNLKQHIRLIHLPGILFCP---LCQKCFKNKLYLRRHVISFHEN  145 (147)
Q Consensus        94 C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~---~C~~~f~~~~~l~~H~~~~h~~  145 (147)
                      |+.|...+......       ..+..|.|.   .|.++|.+..+|+.|+..-|..
T Consensus        40 Cp~C~~~V~rVe~~-------~~~~if~C~~~~~CkrtyLs~rdlqaHI~~~H~~   87 (101)
T 3vk6_A           40 CPGCSDPVQRIEQC-------TRGSLFMCSIVQGCKRTYLSQRDLQAHINHRHMR   87 (101)
T ss_dssp             CTTTCCBCSEEEEE-------EGGGCCCCCCCCCCCCCCSSHHHHHHHHHHHTTT
T ss_pred             CcCcCCeeeeeEEe-------ccCCEEECCCCCCHHHHhcCHHHHHHHHHHHhhh
Confidence            66666555444331       224556665   4777777777777777665543

>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}

Probab=80.74  E-value=0.68  Score=26.24  Aligned_cols=28  Identities=18%  Similarity=0.332  Sum_probs=21.7

Q ss_pred             cCcccccccccccCChHHHHHHHHHhcCCCCc-CCCCchhh
Q psy8937          17 LDARYCKICGKHYSNSSNLKQHIRLIHLPGIL-FCPLCQKC   56 (147)
Q Consensus        17 ~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~-~C~~C~~~   56 (147)
                      ...+.|..||..|...            ..+. .||.|+..
T Consensus        71 p~~~~C~~CG~~~e~~------------~~~~~~CP~Cgs~   99 (119)
T 2kdx_A           71 KVELECKDCSHVFKPN------------ALDYGVCEKCHSK   99 (119)
T ss_dssp             CCEEECSSSSCEECSC------------CSTTCCCSSSSSC
T ss_pred             cceEEcCCCCCEEeCC------------CCCCCcCccccCC
Confidence            4579999999998762            3467 89999865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	147
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	2e-04
d2csha1	53	g.37.1.1 (A:8-60) Zinc finger protein 297b {Human	2e-04
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	0.001
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	0.001

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (81), Expect = 2e-04
 Identities = 13/42 (30%), Positives = 21/42 (50%)

Query: 25 CGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRH 66
          CGK +++ S   +H+ +        C +C K FK K +L  H
Sbjct: 8  CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGH 49

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (81), Expect = 2e-04
 Identities = 13/42 (30%), Positives = 21/42 (50%)

Query: 97  CGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRH 138
           CGK +++ S   +H+ +        C +C K FK K +L  H
Sbjct: 8   CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGH 49

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.7 bits (75), Expect = 0.001
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 22 CKICGKHYSNSSNLKQHIRLIH 43
          C+ CGK +S   +L  HI+ +H
Sbjct: 8  CQSCGKGFSRPDHLNGHIKQVH 29

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.7 bits (75), Expect = 0.001
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 94  CKICGKHYSNSSNLKQHIRLIH 115
           C+ CGK +S   +L  HI+ +H
Sbjct: 8   CQSCGKGFSRPDHLNGHIKQVH 29

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	147
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.81
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.68
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.56
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.54
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.52
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.49
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.48
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.47
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.46
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.45
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.43
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.4
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.36
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.34
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.29
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	99.28
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	99.25
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.2
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.2
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.18
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.16
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.15
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.13
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.13
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.12
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.12
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.1
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.1
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.06
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	99.06
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	99.02
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.98
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.97
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.92
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.86
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.82
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.75
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.73
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.68
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.68
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.57
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.56
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.52
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.48
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.46
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.44
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.44
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.36
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.34
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	98.33
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	98.31
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.3
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.28
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	98.26
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.26
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.25
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.18
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.13
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	98.12
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	98.09
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.01
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.91
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	97.89
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.88
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.85
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.83
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.8
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.79
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.79
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.76
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.75
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.74
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.65
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.63
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.58
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	97.53
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.49
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.46
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.44
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.43
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.42
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.39
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.32
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.27
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	97.27
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	97.15
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	97.06
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.02
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	97.01
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.93
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.91
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	96.8
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.72
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	96.71
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	96.71
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	96.66
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	96.59
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.52
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.5
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.35
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.35
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	96.22
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	96.12
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	96.04
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	95.99
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	95.78
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.74
d1y0jb1	36	U-shaped transcription factor, different fingers {	95.68
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	95.64
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	95.24
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	95.23
d1y0jb1	36	U-shaped transcription factor, different fingers {	95.19
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	94.88
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	94.84
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	94.57
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	94.21
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	94.18
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	93.41
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	93.23
d1yuza2	36	Nigerythrin, C-terminal domain {Desulfovibrio vulg	93.23
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	92.93
d1fu9a_	36	U-shaped transcription factor, different fingers {	92.71
d1wjpa3	41	Zinc finger protein 295, ZNF295 {Human (Homo sapie	92.65
d1m36a_	33	Monocytic leukemia zinc finger protein Moz {Human	91.88
d1x3ca1	61	Zinc finger protein 292, ZNF292 {Human (Homo sapie	90.34
d1wjpa1	42	Zinc finger protein 295, ZNF295 {Human (Homo sapie	90.25
d1wira_	121	Protein arginine N-methyltransferase 3 {Mouse (Mus	89.77
d1wira_	121	Protein arginine N-methyltransferase 3 {Mouse (Mus	89.52
d2ghfa2	36	Zinc fingers and homeoboxes protein 1, ZHX1 {Human	89.41
d2yrka1	48	Zinc finger homeobox protein 4, ZFHX4 {Human (Homo	89.02
d2ct5a1	60	Zinc finger BED domain-containing protein 1 {Human	87.05
d1zu1a2	55	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	86.15
d2czra1	218	TBP-interacting protein {Thermococcus kodakaraensi	84.69
d1wjpa2	26	Zinc finger protein 295, ZNF295 {Human (Homo sapie	84.36

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=8.4e-21  Score=93.40  Aligned_cols=53  Identities=26%  Similarity=0.363  Sum_probs=51.0

Q ss_pred             cCCcccccccccCCChHHHHHHHHHHhCCCcccCCCchhccCChHHHHhHHHhh
Q psy8937          89 LDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVISF  142 (147)
Q Consensus        89 ~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~  142 (147)
                      ||+|.| .||+.|.....|..|+++|.+++||.|.+||+.|...+.|..||++|
T Consensus         1 EK~y~C-~Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCC-CCCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            588999 59999999999999999999999999999999999999999999986

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.2e-17  Score=81.83  Aligned_cols=53  Identities=26%  Similarity=0.385  Sum_probs=49.7

Q ss_pred             cCcccccccccccCChHHHHHHHHHhcCCCCcCCCCchhhhcChHHHHHHHhhh
Q psy8937          17 LDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCFKNKLYLRRHVGTY   70 (147)
Q Consensus        17 ~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~   70 (147)
                      +++|.|. ||+.|.....|..|+++|.+++||.|+.|++.|.....|..|++.|
T Consensus         1 EK~y~C~-Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEECT-TSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCCC-CCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            5799994 9999999999999999999999999999999999999999999654

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=7.5e-16  Score=66.76  Aligned_cols=33  Identities=18%  Similarity=0.171  Sum_probs=31.2

Q ss_pred             HHhCCCcccCCCchhccCChHHHHhHHHhhhcc
Q psy8937         113 LIHLPGILFCPLCQKCFKNKLYLRRHVISFHEN  145 (147)
Q Consensus       113 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~  145 (147)
                      +|.+++||+|.+||+.|.+.+.|..|+++|.||
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            478999999999999999999999999999986

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2.1e-16  Score=71.33  Aligned_cols=36  Identities=17%  Similarity=0.158  Sum_probs=33.7

Q ss_pred             HHHHHhCCCcccCCCchhccCChHHHHhHHHhhhcc
Q psy8937         110 HIRLIHLPGILFCPLCQKCFKNKLYLRRHVISFHEN  145 (147)
Q Consensus       110 H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~  145 (147)
                      |+++|.+++||.|++||+.|...+.|..|+++|+||
T Consensus         3 H~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             cCcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            567789999999999999999999999999999986

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.6e-15  Score=67.46  Aligned_cols=35  Identities=26%  Similarity=0.434  Sum_probs=32.2

Q ss_pred             HHHhCCCcccCCCchhccCChHHHHhHHHhhhccC
Q psy8937         112 RLIHLPGILFCPLCQKCFKNKLYLRRHVISFHENA  146 (147)
Q Consensus       112 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  146 (147)
                      ++|.+|+||+|.+|++.|...+.|..|+++|+++.
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~~   35 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN   35 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSS
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccCCCC
Confidence            36899999999999999999999999999999863

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=6.6e-15  Score=61.24  Aligned_cols=28  Identities=18%  Similarity=0.384  Sum_probs=26.3

Q ss_pred             CCcccCCCchhccCChHHHHhHHHhhhc
Q psy8937         117 PGILFCPLCQKCFKNKLYLRRHVISFHE  144 (147)
Q Consensus       117 ~~~~~C~~C~~~f~~~~~l~~H~~~~h~  144 (147)
                      ||||+|++|++.|.+++.|.+|+++|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            6899999999999999999999999986

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.48  E-value=9.6e-15  Score=61.47  Aligned_cols=29  Identities=24%  Similarity=0.544  Sum_probs=27.2

Q ss_pred             CcccCCCchhccCChHHHHhHHHhhhccC
Q psy8937         118 GILFCPLCQKCFKNKLYLRRHVISFHENA  146 (147)
Q Consensus       118 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  146 (147)
                      +||.|++|++.|.+.+.|.+|+++|+||+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            68999999999999999999999999986

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=1.2e-14  Score=63.75  Aligned_cols=33  Identities=18%  Similarity=0.330  Sum_probs=30.2

Q ss_pred             HhCCCcccCCCchhccCChHHHHhHHHhhhccC
Q psy8937         114 IHLPGILFCPLCQKCFKNKLYLRRHVISFHENA  146 (147)
Q Consensus       114 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  146 (147)
                      |.+++||+|.+|++.|.++..|.+|+++|.+..
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~~~   34 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTL   34 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSCC
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCCcC
Confidence            578999999999999999999999999998764

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.1e-14  Score=60.29  Aligned_cols=29  Identities=24%  Similarity=0.487  Sum_probs=26.8

Q ss_pred             CcccCCCchhccCChHHHHhHHHhhhccC
Q psy8937         118 GILFCPLCQKCFKNKLYLRRHVISFHENA  146 (147)
Q Consensus       118 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  146 (147)
                      |||.|++|++.|.+.+.|.+|+++|.|++
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            68999999999999999999999999985

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=4.6e-15  Score=66.38  Aligned_cols=35  Identities=20%  Similarity=0.158  Sum_probs=31.8

Q ss_pred             HHHHHhCCCcccCCCchhccCChHHHHhHHHhhhc
Q psy8937         110 HIRLIHLPGILFCPLCQKCFKNKLYLRRHVISFHE  144 (147)
Q Consensus       110 H~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~  144 (147)
                      |.+.|.+|+||+|.+|++.|.+++.|.+|+++|.+
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcCcC
Confidence            45779999999999999999999999999999853

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.3e-14  Score=64.36  Aligned_cols=33  Identities=15%  Similarity=0.265  Sum_probs=30.4

Q ss_pred             HHhCCCcccCCCchhccCChHHHHhHHHhhhcc
Q psy8937         113 LIHLPGILFCPLCQKCFKNKLYLRRHVISFHEN  145 (147)
Q Consensus       113 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~  145 (147)
                      +|.+|+||+|++|++.|+++.+|.+|++.+|++
T Consensus         2 ~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           2 THSGEKPYECYICHARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             CCSCCCSEECTTTCCEESCHHHHHHHHHHHSSS
T ss_pred             ccCCCCCEeCCCCcccccchHHHHHHcccccCC
Confidence            588999999999999999999999999888775

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=6.5e-14  Score=62.89  Aligned_cols=37  Identities=24%  Similarity=0.462  Sum_probs=31.4

Q ss_pred             CcCCcccccccccCCChHHHHHHHH-HHhCCCcccCCC
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIR-LIHLPGILFCPL  124 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~-~~~~~~~~~C~~  124 (147)
                      .++||.|..|++.|...+.|..|++ +|.+++||+|.+
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCcC
Confidence            4688889999999999999999975 688999998874

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.7e-13  Score=55.51  Aligned_cols=26  Identities=23%  Similarity=0.231  Sum_probs=23.7

Q ss_pred             CcccCCCchhccCChHHHHhHHHhhh
Q psy8937         118 GILFCPLCQKCFKNKLYLRRHVISFH  143 (147)
Q Consensus       118 ~~~~C~~C~~~f~~~~~l~~H~~~~h  143 (147)
                      |||+|.+||+.|...+.|..|+++|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            68999999999999999999999984

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=3.4e-13  Score=60.52  Aligned_cols=37  Identities=24%  Similarity=0.462  Sum_probs=33.3

Q ss_pred             ccCcccccccccccCChHHHHHHHH-HhcCCCCcCCCC
Q psy8937          16 SLDARYCKICGKHYSNSSNLKQHIR-LIHLPGILFCPL   52 (147)
Q Consensus        16 ~~~~~~C~~C~~~f~~~~~l~~h~~-~~~~~~~~~C~~   52 (147)
                      .+++|+|.+||+.|...++|..|++ +|.+++||.|.+
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCcC
Confidence            5789999999999999999999986 588889999974

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.29  E-value=2.6e-14  Score=67.15  Aligned_cols=40  Identities=20%  Similarity=0.460  Sum_probs=34.8

Q ss_pred             HHHHHHHHHhCCCcccCCC--chhccCChHHHHhHHHhhhccC
Q psy8937         106 NLKQHIRLIHLPGILFCPL--CQKCFKNKLYLRRHVISFHENA  146 (147)
Q Consensus       106 ~l~~H~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~~~~h~~~  146 (147)
                      .+..|+. |.+++||.|.+  |++.|.+.+.|..|+++|.|++
T Consensus         6 ~l~~h~~-h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           6 SIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             SGGGSCE-EETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             hhcchhh-ccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            3445664 89999999977  9999999999999999999985

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.3e-12  Score=55.08  Aligned_cols=28  Identities=21%  Similarity=0.406  Sum_probs=25.5

Q ss_pred             CcccCCC--chhccCChHHHHhHHHhhhcc
Q psy8937         118 GILFCPL--CQKCFKNKLYLRRHVISFHEN  145 (147)
Q Consensus       118 ~~~~C~~--C~~~f~~~~~l~~H~~~~h~~  145 (147)
                      |||.|++  |++.|.+.+.|.+|+++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            6899987  999999999999999999986

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.8e-12  Score=54.71  Aligned_cols=28  Identities=29%  Similarity=0.485  Sum_probs=25.4

Q ss_pred             CcccCCC--chhccCChHHHHhHHHhhhcc
Q psy8937         118 GILFCPL--CQKCFKNKLYLRRHVISFHEN  145 (147)
Q Consensus       118 ~~~~C~~--C~~~f~~~~~l~~H~~~~h~~  145 (147)
                      +||.|++  |++.|.+.+.|.+|+++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            6899976  999999999999999999986

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=3.7e-12  Score=54.15  Aligned_cols=29  Identities=24%  Similarity=0.424  Sum_probs=26.1

Q ss_pred             CcccCC--CchhccCChHHHHhHHHhhhccC
Q psy8937         118 GILFCP--LCQKCFKNKLYLRRHVISFHENA  146 (147)
Q Consensus       118 ~~~~C~--~C~~~f~~~~~l~~H~~~~h~~~  146 (147)
                      +||.|+  .|++.|.+.+.|.+|+++|.|++
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            589995  69999999999999999999985

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=6.7e-12  Score=56.22  Aligned_cols=36  Identities=28%  Similarity=0.365  Sum_probs=28.0

Q ss_pred             CCCCccCccCcccccccccccCChHHHHHHHHHhcC
Q psy8937           9 GGSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHL   44 (147)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~   44 (147)
                      .+...++++++|.|++||++|...++|..|+++|.+
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtG   37 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTG   37 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCC
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccCCC
Confidence            456677788888888888888888888888877665

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=8.1e-12  Score=55.19  Aligned_cols=34  Identities=21%  Similarity=0.410  Sum_probs=28.5

Q ss_pred             CccCccCcccccccccccCChHHHHHHHHHhcCC
Q psy8937          12 KPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLP   45 (147)
Q Consensus        12 ~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~   45 (147)
                      +.+++++||.|.+||++|...+.|..|+++|+.+
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccCCC
Confidence            3578889999999999999999999999877654

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=1e-11  Score=53.48  Aligned_cols=31  Identities=35%  Similarity=0.388  Sum_probs=23.6

Q ss_pred             cCccCcccccccccccCChHHHHHHHHHhcC
Q psy8937          14 LHSLDARYCKICGKHYSNSSNLKQHIRLIHL   44 (147)
Q Consensus        14 ~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~   44 (147)
                      +++++||.|.+||+.|...+.|..|+++|.+
T Consensus         2 HTgekpy~C~~Cgk~F~~~~~L~~H~r~Htg   32 (33)
T d1x6ea1           2 HSGEKPYGCVECGKAFSRSSILVQHQRVHTG   32 (33)
T ss_dssp             TTTCCCEECSSSCCEESSHHHHHHHHHGGGC
T ss_pred             cCCCCCeeCCCCCCEeCchHHhHhhccccCC
Confidence            5677778888888888888888877776664

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.15  E-value=1.4e-11  Score=54.74  Aligned_cols=34  Identities=21%  Similarity=0.422  Sum_probs=27.5

Q ss_pred             CCCCccCccCcccccccccccCChHHHHHHHHHh
Q psy8937           9 GGSKPLHSLDARYCKICGKHYSNSSNLKQHIRLI   42 (147)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~   42 (147)
                      |..+.+++++||.|++|++.|...++|..|++.|
T Consensus         1 gh~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H   34 (37)
T d1p7aa_           1 GSTRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH   34 (37)
T ss_dssp             CCSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGG
T ss_pred             CCCCccCCccCeEeCCCCCEecCHHHHHHHHhcC
Confidence            4567788888888888888888888888888754

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.13  E-value=2e-11  Score=52.11  Aligned_cols=30  Identities=33%  Similarity=0.425  Sum_probs=26.6

Q ss_pred             CCcccCCC--chhccCChHHHHhHHHhhhccC
Q psy8937         117 PGILFCPL--CQKCFKNKLYLRRHVISFHENA  146 (147)
Q Consensus       117 ~~~~~C~~--C~~~f~~~~~l~~H~~~~h~~~  146 (147)
                      |+||.|++  |++.|++...|.+|+++|..++
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~ks   32 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEKA   32 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCCC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccCCC
Confidence            68999977  9999999999999999998753

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.13  E-value=1.5e-11  Score=51.48  Aligned_cols=29  Identities=21%  Similarity=0.486  Sum_probs=27.4

Q ss_pred             CCcccccccccCCChHHHHHHHHHHhCCC
Q psy8937          90 DARYCKICGKHYSNSSNLKQHIRLIHLPG  118 (147)
Q Consensus        90 ~~~~C~~c~~~~~~~~~l~~H~~~~~~~~  118 (147)
                      +||.|+.|++.|...+.|..|+++|.+|+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            57899999999999999999999999985

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=2.1e-11  Score=50.94  Aligned_cols=29  Identities=24%  Similarity=0.413  Sum_probs=27.4

Q ss_pred             CCcccccccccCCChHHHHHHHHHHhCCC
Q psy8937          90 DARYCKICGKHYSNSSNLKQHIRLIHLPG  118 (147)
Q Consensus        90 ~~~~C~~c~~~~~~~~~l~~H~~~~~~~~  118 (147)
                      |||.|..|++.|...+.|..|+++|.+|+
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            57899999999999999999999999985

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=2.4e-11  Score=53.56  Aligned_cols=34  Identities=24%  Similarity=0.413  Sum_probs=28.2

Q ss_pred             CccCccCcccccccccccCChHHHHHHHHHhcCC
Q psy8937          12 KPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLP   45 (147)
Q Consensus        12 ~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~   45 (147)
                      +.+++++||+|++|++.|...++|..|++.+|..
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHcccccCC
Confidence            3578899999999999999999999998766654

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.10  E-value=1.8e-11  Score=53.43  Aligned_cols=31  Identities=16%  Similarity=0.375  Sum_probs=24.6

Q ss_pred             cCccCcccccccccccCChHHHHHHHHHhcC
Q psy8937          14 LHSLDARYCKICGKHYSNSSNLKQHIRLIHL   44 (147)
Q Consensus        14 ~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~   44 (147)
                      +++++||+|.+|++.|...++|..|+++|..
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~   32 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTD   32 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTS
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCC
Confidence            4678888888888888888888888886654

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.10  E-value=2e-11  Score=50.49  Aligned_cols=28  Identities=32%  Similarity=0.554  Sum_probs=26.4

Q ss_pred             cCCcccccccccCCChHHHHHHHHHHhC
Q psy8937          89 LDARYCKICGKHYSNSSNLKQHIRLIHL  116 (147)
Q Consensus        89 ~~~~~C~~c~~~~~~~~~l~~H~~~~~~  116 (147)
                      ||||.|..|++.|...+.|..|+++|.|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            5899999999999999999999999975

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.06  E-value=3.2e-11  Score=50.22  Aligned_cols=27  Identities=26%  Similarity=0.539  Sum_probs=24.3

Q ss_pred             CcccCCC--chhccCChHHHHhHHHhhhc
Q psy8937         118 GILFCPL--CQKCFKNKLYLRRHVISFHE  144 (147)
Q Consensus       118 ~~~~C~~--C~~~f~~~~~l~~H~~~~h~  144 (147)
                      |||.|++  |++.|.+.+.|.+|+++|.|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            6899966  99999999999999999976

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=4.7e-11  Score=52.47  Aligned_cols=32  Identities=28%  Similarity=0.558  Sum_probs=26.4

Q ss_pred             ccccc--ccccCCChHHHHHHHHHHhCCCcccCC
Q psy8937          92 RYCKI--CGKHYSNSSNLKQHIRLIHLPGILFCP  123 (147)
Q Consensus        92 ~~C~~--c~~~~~~~~~l~~H~~~~~~~~~~~C~  123 (147)
                      |.|+.  |++.|...+.|..|+++|.+++||+|+
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCC
Confidence            45654  888888888888888888888888886

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=6.4e-11  Score=45.49  Aligned_cols=26  Identities=31%  Similarity=0.581  Sum_probs=24.0

Q ss_pred             cccCCCchhccCChHHHHhHHHhhhc
Q psy8937         119 ILFCPLCQKCFKNKLYLRRHVISFHE  144 (147)
Q Consensus       119 ~~~C~~C~~~f~~~~~l~~H~~~~h~  144 (147)
                      |.+|++|++.|+++..|..|||.|+|
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            56899999999999999999999875

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=1e-10  Score=47.13  Aligned_cols=26  Identities=35%  Similarity=0.607  Sum_probs=24.4

Q ss_pred             CCcccccccccCCChHHHHHHHHHHh
Q psy8937          90 DARYCKICGKHYSNSSNLKQHIRLIH  115 (147)
Q Consensus        90 ~~~~C~~c~~~~~~~~~l~~H~~~~~  115 (147)
                      |||+|..||++|...+.|..|+++|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            68999999999999999999999984

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=2e-10  Score=50.43  Aligned_cols=33  Identities=27%  Similarity=0.561  Sum_probs=30.1

Q ss_pred             ccccc--cccccCChHHHHHHHHHhcCCCCcCCCC
Q psy8937          20 RYCKI--CGKHYSNSSNLKQHIRLIHLPGILFCPL   52 (147)
Q Consensus        20 ~~C~~--C~~~f~~~~~l~~h~~~~~~~~~~~C~~   52 (147)
                      |.|+.  |++.|.....|++|+++|.+++||.|+.
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~f   36 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF   36 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCS
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCCC
Confidence            67877  9999999999999999999999999973

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=1.4e-10  Score=47.68  Aligned_cols=26  Identities=27%  Similarity=0.691  Sum_probs=22.1

Q ss_pred             CcccCCC--chhccCChHHHHhHHHhhh
Q psy8937         118 GILFCPL--CQKCFKNKLYLRRHVISFH  143 (147)
Q Consensus       118 ~~~~C~~--C~~~f~~~~~l~~H~~~~h  143 (147)
                      +||.|++  |++.|++...|.+|+++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            5788966  9999999999999998874

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=9.3e-10  Score=46.09  Aligned_cols=28  Identities=36%  Similarity=0.581  Sum_probs=26.0

Q ss_pred             CCccccc--ccccCCChHHHHHHHHHHhCC
Q psy8937          90 DARYCKI--CGKHYSNSSNLKQHIRLIHLP  117 (147)
Q Consensus        90 ~~~~C~~--c~~~~~~~~~l~~H~~~~~~~  117 (147)
                      |||.|..  |+++|...+.|..|+++|.+|
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            5789988  999999999999999999986

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=1.1e-09  Score=45.96  Aligned_cols=28  Identities=32%  Similarity=0.618  Sum_probs=25.8

Q ss_pred             CCccccc--ccccCCChHHHHHHHHHHhCC
Q psy8937          90 DARYCKI--CGKHYSNSSNLKQHIRLIHLP  117 (147)
Q Consensus        90 ~~~~C~~--c~~~~~~~~~l~~H~~~~~~~  117 (147)
                      |||.|..  |+++|...+.|..|+++|.+|
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            5788977  999999999999999999986

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=3.2e-09  Score=42.64  Aligned_cols=29  Identities=31%  Similarity=0.442  Sum_probs=25.2

Q ss_pred             CCcccCCCchhccCChHHHHhHHHhhhcc
Q psy8937         117 PGILFCPLCQKCFKNKLYLRRHVISFHEN  145 (147)
Q Consensus       117 ~~~~~C~~C~~~f~~~~~l~~H~~~~h~~  145 (147)
                      |+||.|++|+..|.++.-+.-|.++|-|.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             CCCcccchHHHHhhccccceEeeecccCc
Confidence            57899999999999999999999988764

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.73  E-value=3.2e-09  Score=42.03  Aligned_cols=27  Identities=19%  Similarity=0.311  Sum_probs=24.4

Q ss_pred             CCcccCCCchhccCChHHHHhHHHhhh
Q psy8937         117 PGILFCPLCQKCFKNKLYLRRHVISFH  143 (147)
Q Consensus       117 ~~~~~C~~C~~~f~~~~~l~~H~~~~h  143 (147)
                      |+||.|.+||+.|.+.....+|.++|.
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            689999999999999999999999874

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=3.8e-09  Score=44.60  Aligned_cols=29  Identities=28%  Similarity=0.526  Sum_probs=26.2

Q ss_pred             CCcccc--cccccCCChHHHHHHHHHHhCCC
Q psy8937          90 DARYCK--ICGKHYSNSSNLKQHIRLIHLPG  118 (147)
Q Consensus        90 ~~~~C~--~c~~~~~~~~~l~~H~~~~~~~~  118 (147)
                      +||.|+  .|++.|...+.|..|+++|.+|+
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            578895  69999999999999999999885

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.68  E-value=2.6e-09  Score=49.73  Aligned_cols=31  Identities=19%  Similarity=0.322  Sum_probs=28.9

Q ss_pred             CcCCccccc--ccccCCChHHHHHHHHHHhCCC
Q psy8937          88 SLDARYCKI--CGKHYSNSSNLKQHIRLIHLPG  118 (147)
Q Consensus        88 ~~~~~~C~~--c~~~~~~~~~l~~H~~~~~~~~  118 (147)
                      ++++|.|..  |++.|...+.|..|+++|.+++
T Consensus        15 gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_          15 PDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             TTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             CCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            779999977  9999999999999999999985

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.57  E-value=1e-08  Score=42.45  Aligned_cols=26  Identities=31%  Similarity=0.751  Sum_probs=17.5

Q ss_pred             Ccccccc--cccccCChHHHHHHHHHhc
Q psy8937          18 DARYCKI--CGKHYSNSSNLKQHIRLIH   43 (147)
Q Consensus        18 ~~~~C~~--C~~~f~~~~~l~~h~~~~~   43 (147)
                      +||+|++  |++.|...++|..|+++|.
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~Ht   28 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHT   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHH
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccC
Confidence            4666766  7777777777777766554

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.56  E-value=2.1e-08  Score=42.46  Aligned_cols=27  Identities=19%  Similarity=0.375  Sum_probs=17.8

Q ss_pred             cCcccccc--cccccCChHHHHHHHHHhc
Q psy8937          17 LDARYCKI--CGKHYSNSSNLKQHIRLIH   43 (147)
Q Consensus        17 ~~~~~C~~--C~~~f~~~~~l~~h~~~~~   43 (147)
                      +++|.|++  |++.|...++|..|+++|.
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht   29 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ   29 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGT
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhcc
Confidence            35667766  7777777777777766544

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=1.7e-08  Score=41.35  Aligned_cols=25  Identities=36%  Similarity=0.677  Sum_probs=18.4

Q ss_pred             Ccccccc--cccccCChHHHHHHHHHh
Q psy8937          18 DARYCKI--CGKHYSNSSNLKQHIRLI   42 (147)
Q Consensus        18 ~~~~C~~--C~~~f~~~~~l~~h~~~~   42 (147)
                      +||+|+.  |++.|...++|+.|++.|
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~H   27 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTH   27 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHH
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhc
Confidence            4677777  777777777777777755

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=3.1e-08  Score=38.83  Aligned_cols=28  Identities=21%  Similarity=0.318  Sum_probs=17.4

Q ss_pred             CCcccCCCchhccCChHHHHhHHHhhhc
Q psy8937         117 PGILFCPLCQKCFKNKLYLRRHVISFHE  144 (147)
Q Consensus       117 ~~~~~C~~C~~~f~~~~~l~~H~~~~h~  144 (147)
                      ++||+|..|.+.-...+.|.-|+|.|+|
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~htg   28 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             CCcceeeecccccCCchheEEeeecccC
Confidence            3566666666666666666666666655

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=3.7e-08  Score=37.64  Aligned_cols=23  Identities=39%  Similarity=0.869  Sum_probs=13.8

Q ss_pred             ccccccccccCChHHHHHHHHHh
Q psy8937          20 RYCKICGKHYSNSSNLKQHIRLI   42 (147)
Q Consensus        20 ~~C~~C~~~f~~~~~l~~h~~~~   42 (147)
                      .+|+.|++.|+.+..|..|++.|
T Consensus         2 hkc~~c~kcfsrkdklk~hmr~h   24 (26)
T d2dmda2           2 HKCEVCGKCFSRKDKLKTHMRCH   24 (26)
T ss_dssp             CCBTTTTBCCCCHHHHHHHGGGC
T ss_pred             CccchhhhHhcchhHHHHHhhcc
Confidence            45666666666666666666543

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=9.5e-08  Score=38.26  Aligned_cols=29  Identities=17%  Similarity=0.442  Sum_probs=25.3

Q ss_pred             cCcccccccccccCChHHHHHHHHHhcCC
Q psy8937          17 LDARYCKICGKHYSNSSNLKQHIRLIHLP   45 (147)
Q Consensus        17 ~~~~~C~~C~~~f~~~~~l~~h~~~~~~~   45 (147)
                      ++||.|++|+..|..+..+..|.+.|-+.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             CCCcccchHHHHhhccccceEeeecccCc
Confidence            47899999999999999999999976554

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=5.6e-08  Score=38.97  Aligned_cols=27  Identities=33%  Similarity=0.643  Sum_probs=22.5

Q ss_pred             CcccCCC--chhccCChHHHHhHHHhhhc
Q psy8937         118 GILFCPL--CQKCFKNKLYLRRHVISFHE  144 (147)
Q Consensus       118 ~~~~C~~--C~~~f~~~~~l~~H~~~~h~  144 (147)
                      |||.|.+  |++.+...++|+.|++.+||
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            5788854  88999999999999988876

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=8.8e-08  Score=39.26  Aligned_cols=28  Identities=29%  Similarity=0.616  Sum_probs=14.1

Q ss_pred             ccCCCchhccCChHHHHhHHHhhhccCC
Q psy8937         120 LFCPLCQKCFKNKLYLRRHVISFHENAT  147 (147)
Q Consensus       120 ~~C~~C~~~f~~~~~l~~H~~~~h~~~~  147 (147)
                      ..|..||+.|.....|.+|.-+|.+++|
T Consensus         6 ~~ce~cgk~frdvyhlnrhklshs~ekp   33 (35)
T d2epra1           6 VACEICGKIFRDVYHLNRHKLSHSGEKP   33 (35)
T ss_dssp             EEETTTTEEESSHHHHHHHGGGSCSCCC
T ss_pred             hhHHHHHHHHHHHHHHHhhhcccCCCCC
Confidence            3455555555555555555555555543

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=5.6e-08  Score=38.09  Aligned_cols=29  Identities=31%  Similarity=0.336  Sum_probs=26.2

Q ss_pred             cCCcccccccccCCChHHHHHHHHHHhCC
Q psy8937          89 LDARYCKICGKHYSNSSNLKQHIRLIHLP  117 (147)
Q Consensus        89 ~~~~~C~~c~~~~~~~~~l~~H~~~~~~~  117 (147)
                      ++||+|+.|...-.++++|..|++.|++.
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~htgd   29 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHTGD   29 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCSC
T ss_pred             CCcceeeecccccCCchheEEeeecccCc
Confidence            47899999999999999999999998763

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.33  E-value=2.7e-07  Score=36.29  Aligned_cols=29  Identities=28%  Similarity=0.711  Sum_probs=25.6

Q ss_pred             CCcccCCCchhccCChHHHHhHHHhhhcc
Q psy8937         117 PGILFCPLCQKCFKNKLYLRRHVISFHEN  145 (147)
Q Consensus       117 ~~~~~C~~C~~~f~~~~~l~~H~~~~h~~  145 (147)
                      ++.|.|+.|...|.++-.|+.||.+|+|+
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeecccCC
Confidence            56788999999999999999999999875

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=2.7e-07  Score=36.33  Aligned_cols=27  Identities=19%  Similarity=0.387  Sum_probs=22.9

Q ss_pred             ccCCCchhccCChHHHHhHHHhhhccC
Q psy8937         120 LFCPLCQKCFKNKLYLRRHVISFHENA  146 (147)
Q Consensus       120 ~~C~~C~~~f~~~~~l~~H~~~~h~~~  146 (147)
                      |.|+.||......+-|..|+|+|++++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSCC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCCC
Confidence            778888888888888889998888763

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=1.9e-07  Score=36.39  Aligned_cols=26  Identities=27%  Similarity=0.525  Sum_probs=19.4

Q ss_pred             ccCCCchhccCChHHHHhHHHhhhcc
Q psy8937         120 LFCPLCQKCFKNKLYLRRHVISFHEN  145 (147)
Q Consensus       120 ~~C~~C~~~f~~~~~l~~H~~~~h~~  145 (147)
                      ..|.+||+.|...+.|.+|.-+|+|+
T Consensus         3 hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             chHHHHhHHHHHHHHHHHHhhcccCC
Confidence            45777777777777777777777764

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=3.8e-07  Score=36.00  Aligned_cols=29  Identities=24%  Similarity=0.395  Sum_probs=26.1

Q ss_pred             CcccCCCchhccCChHHHHhHHHhhhccC
Q psy8937         118 GILFCPLCQKCFKNKLYLRRHVISFHENA  146 (147)
Q Consensus       118 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  146 (147)
                      +||+|+.|.....+.++|..|++..|++.
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~Dm   29 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHGDM   29 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHSSS
T ss_pred             CCcccceecccccCcchHHHHHHHHccCC
Confidence            48999999999999999999999999863

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.26  E-value=4.3e-07  Score=34.81  Aligned_cols=26  Identities=35%  Similarity=0.632  Sum_probs=19.3

Q ss_pred             cCCCchhccCChHHHHhHHHhhhccC
Q psy8937         121 FCPLCQKCFKNKLYLRRHVISFHENA  146 (147)
Q Consensus       121 ~C~~C~~~f~~~~~l~~H~~~~h~~~  146 (147)
                      +|+.|.+.|.++..|.-|-|.|+|++
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            57777777777777777777777764

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.26  E-value=1.9e-07  Score=36.83  Aligned_cols=26  Identities=27%  Similarity=0.658  Sum_probs=18.0

Q ss_pred             cCcccccccccccCChHHHHHHHHHh
Q psy8937          17 LDARYCKICGKHYSNSSNLKQHIRLI   42 (147)
Q Consensus        17 ~~~~~C~~C~~~f~~~~~l~~h~~~~   42 (147)
                      ++||.|++||+.|.......+|..+|
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH   26 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIH   26 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGG
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhc
Confidence            35777777777777777777776543

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=2.9e-07  Score=35.72  Aligned_cols=26  Identities=15%  Similarity=0.249  Sum_probs=23.4

Q ss_pred             CcccCCCchhccCChHHHHhHHHhhh
Q psy8937         118 GILFCPLCQKCFKNKLYLRRHVISFH  143 (147)
Q Consensus       118 ~~~~C~~C~~~f~~~~~l~~H~~~~h  143 (147)
                      +||+|..|++.-...++|..|+|+|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            68999999999999999999999874

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=1.8e-07  Score=38.30  Aligned_cols=31  Identities=23%  Similarity=0.312  Sum_probs=28.1

Q ss_pred             CcccccccccCCChHHHHHHHHHHhCCCccc
Q psy8937          91 ARYCKICGKHYSNSSNLKQHIRLIHLPGILF  121 (147)
Q Consensus        91 ~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~  121 (147)
                      ...|..||+.|.....|.+|...|.+||||.
T Consensus         5 ~~~ce~cgk~frdvyhlnrhklshs~ekpys   35 (35)
T d2epra1           5 QVACEICGKIFRDVYHLNRHKLSHSGEKPYS   35 (35)
T ss_dssp             SEEETTTTEEESSHHHHHHHGGGSCSCCCCC
T ss_pred             hhhHHHHHHHHHHHHHHHhhhcccCCCCCCC
Confidence            3469999999999999999999999999983

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.13  E-value=5.4e-07  Score=36.38  Aligned_cols=27  Identities=30%  Similarity=0.583  Sum_probs=24.2

Q ss_pred             cccCCCchhccCChHHHHhHHHhhhcc
Q psy8937         119 ILFCPLCQKCFKNKLYLRRHVISFHEN  145 (147)
Q Consensus       119 ~~~C~~C~~~f~~~~~l~~H~~~~h~~  145 (147)
                      ||.|.+|++.|+++..|.+|...-|+.
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~g   27 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHSG   27 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhcC
Confidence            689999999999999999998877764

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=1.5e-06  Score=34.29  Aligned_cols=28  Identities=18%  Similarity=0.347  Sum_probs=21.9

Q ss_pred             CcccCCCchhccCChHHHHhHHHhhhcc
Q psy8937         118 GILFCPLCQKCFKNKLYLRRHVISFHEN  145 (147)
Q Consensus       118 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~  145 (147)
                      +||+|..|.+.....++|..|+++.|+.
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhsk   28 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHSK   28 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSS
T ss_pred             CCccccccccccccchhhhhhhhccccc
Confidence            5788888888888888888888877764

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=1.1e-06  Score=37.96  Aligned_cols=25  Identities=28%  Similarity=0.348  Sum_probs=18.1

Q ss_pred             CCCcccCCCchhccCChHHHHhHHH
Q psy8937         116 LPGILFCPLCQKCFKNKLYLRRHVI  140 (147)
Q Consensus       116 ~~~~~~C~~C~~~f~~~~~l~~H~~  140 (147)
                      +-|||.|.+|+|.|-.+.++.+|..
T Consensus         2 GiKPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           2 GIKPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCCceeccchhhhhhhHHHHHHhhh
Confidence            4577777777777777777777754

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=6.5e-07  Score=34.83  Aligned_cols=26  Identities=35%  Similarity=0.560  Sum_probs=23.6

Q ss_pred             cccccccccCCChHHHHHHHHHHhCC
Q psy8937          92 RYCKICGKHYSNSSNLKQHIRLIHLP  117 (147)
Q Consensus        92 ~~C~~c~~~~~~~~~l~~H~~~~~~~  117 (147)
                      +.|..||+.|..++.|.+|+.+|++|
T Consensus         3 hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             chHHHHhHHHHHHHHHHHHhhcccCC
Confidence            45999999999999999999998875

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.91  E-value=3.6e-06  Score=31.66  Aligned_cols=23  Identities=35%  Similarity=0.597  Sum_probs=18.6

Q ss_pred             ccCCCchhccCChHHHHhHHHhh
Q psy8937         120 LFCPLCQKCFKNKLYLRRHVISF  142 (147)
Q Consensus       120 ~~C~~C~~~f~~~~~l~~H~~~~  142 (147)
                      |+|..|.++|..++.|.+|++.|
T Consensus         1 ykcglcersfveksalsrhqrvh   23 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVH   23 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred             CcccchHHHHHHHHHHHHHHHhh
Confidence            57888888888888888888776

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=8e-06  Score=32.03  Aligned_cols=25  Identities=36%  Similarity=0.518  Sum_probs=14.7

Q ss_pred             ccccccccccCChHHHHHHHHHhcC
Q psy8937          20 RYCKICGKHYSNSSNLKQHIRLIHL   44 (147)
Q Consensus        20 ~~C~~C~~~f~~~~~l~~h~~~~~~   44 (147)
                      |+|+.||......+.|+.|++.|.+
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~   26 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTD   26 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSS
T ss_pred             ccccccCcccCCHHHHHHHHHHhcC
Confidence            5566666666666666666665543

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=3.4e-06  Score=33.13  Aligned_cols=24  Identities=33%  Similarity=0.513  Sum_probs=21.5

Q ss_pred             cccCCCchhccCChHHHHhHHHhh
Q psy8937         119 ILFCPLCQKCFKNKLYLRRHVISF  142 (147)
Q Consensus       119 ~~~C~~C~~~f~~~~~l~~H~~~~  142 (147)
                      ||.|..|+..|..+.+|..||++.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSK   24 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSK   24 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSS
T ss_pred             CcccceeeeeEeeccchhHhhhhh
Confidence            688999999999999999999865

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.85  E-value=5e-06  Score=35.70  Aligned_cols=26  Identities=19%  Similarity=0.459  Sum_probs=15.0

Q ss_pred             cccCCCchhccCChHHHHhHHHhhhc
Q psy8937         119 ILFCPLCQKCFKNKLYLRRHVISFHE  144 (147)
Q Consensus       119 ~~~C~~C~~~f~~~~~l~~H~~~~h~  144 (147)
                      .|+|.+|++.|.+...|=-||+.|..
T Consensus         5 ~~~C~~C~k~F~s~qALGGH~~~Hr~   30 (37)
T d1njqa_           5 SYTCSFCKREFRSAQALGGHMNVHRR   30 (37)
T ss_dssp             SEECTTTCCEESSHHHHHHHHHTTCC
T ss_pred             ccCCCCCCCccCCcccccchHhhhcc
Confidence            45566666666666666556555543

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.83  E-value=1.1e-05  Score=30.85  Aligned_cols=26  Identities=27%  Similarity=0.324  Sum_probs=24.2

Q ss_pred             ccccccccCCChHHHHHHHHHHhCCC
Q psy8937          93 YCKICGKHYSNSSNLKQHIRLIHLPG  118 (147)
Q Consensus        93 ~C~~c~~~~~~~~~l~~H~~~~~~~~  118 (147)
                      .|+.|.+.|.+..-|..|-+.|.+|+
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            49999999999999999999999875

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.80  E-value=7.3e-06  Score=32.21  Aligned_cols=28  Identities=25%  Similarity=0.415  Sum_probs=23.3

Q ss_pred             CcccC--CCchhccCChHHHHhHHHhhhcc
Q psy8937         118 GILFC--PLCQKCFKNKLYLRRHVISFHEN  145 (147)
Q Consensus       118 ~~~~C--~~C~~~f~~~~~l~~H~~~~h~~  145 (147)
                      +||.|  ..|.+.|.....|.+|.-+|.|+
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            46777  46999999999999999988875

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.79  E-value=1e-05  Score=31.66  Aligned_cols=28  Identities=14%  Similarity=0.315  Sum_probs=18.3

Q ss_pred             cCcccccccccccCChHHHHHHHHHhcC
Q psy8937          17 LDARYCKICGKHYSNSSNLKQHIRLIHL   44 (147)
Q Consensus        17 ~~~~~C~~C~~~f~~~~~l~~h~~~~~~   44 (147)
                      +..|.|..|...|...-.|+.||-.|.+
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvshtg   29 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHTG   29 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHSS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeecccC
Confidence            3456677777777777777777665544

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=7.3e-06  Score=32.69  Aligned_cols=25  Identities=36%  Similarity=0.958  Sum_probs=14.5

Q ss_pred             cccccc--cccccCChHHHHHHHHHhc
Q psy8937          19 ARYCKI--CGKHYSNSSNLKQHIRLIH   43 (147)
Q Consensus        19 ~~~C~~--C~~~f~~~~~l~~h~~~~~   43 (147)
                      +|.|.+  |++.+...+.|+.|++.+|
T Consensus         2 PY~Ck~~gC~K~YtdPSSLRKH~k~~H   28 (29)
T d2glia5           2 PYVCKLPGCTKRYTDPSSLRKHVKTVH   28 (29)
T ss_dssp             CEECCSTTTCCEESSHHHHHHHHHHSC
T ss_pred             CeecccCCCCcccCCHHHHHHHHHhhC
Confidence            455555  5566666666666665444

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=6.4e-06  Score=32.32  Aligned_cols=23  Identities=30%  Similarity=0.587  Sum_probs=12.0

Q ss_pred             CcCCCCchhhhcChHHHHHHHhh
Q psy8937          47 ILFCPLCQKCFKNKLYLRRHVGT   69 (147)
Q Consensus        47 ~~~C~~C~~~f~~~~~l~~H~~~   69 (147)
                      ||.|..|..+|..+++|.+||.+
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            34455555555555555555543

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.75  E-value=9.2e-06  Score=30.53  Aligned_cols=24  Identities=29%  Similarity=0.533  Sum_probs=19.4

Q ss_pred             cccCCCchhccCChHHHHhHHHhh
Q psy8937         119 ILFCPLCQKCFKNKLYLRRHVISF  142 (147)
Q Consensus       119 ~~~C~~C~~~f~~~~~l~~H~~~~  142 (147)
                      ||+|+.|...|-++..|+.||..-
T Consensus         2 pykcsscsqqfmqkkdlqshmikl   25 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMIKL   25 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHHT
T ss_pred             CCcccHHHHHHHHHHHHHHHHHhc
Confidence            688888888888888888887643

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.74  E-value=9.6e-06  Score=34.79  Aligned_cols=27  Identities=15%  Similarity=0.479  Sum_probs=21.1

Q ss_pred             CcccccccccccCChHHHHHHHHHhcC
Q psy8937          18 DARYCKICGKHYSNSSNLKQHIRLIHL   44 (147)
Q Consensus        18 ~~~~C~~C~~~f~~~~~l~~h~~~~~~   44 (147)
                      +.|+|.+|++.|.+..+|-.|++.|..
T Consensus         4 r~~~C~~C~k~F~s~qALGGH~~~Hr~   30 (37)
T d1njqa_           4 RSYTCSFCKREFRSAQALGGHMNVHRR   30 (37)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHTTCC
T ss_pred             CccCCCCCCCccCCcccccchHhhhcc
Confidence            568888888888888888888875543

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.65  E-value=9.9e-06  Score=30.44  Aligned_cols=21  Identities=29%  Similarity=0.697  Sum_probs=12.5

Q ss_pred             ccccccccccCChHHHHHHHH
Q psy8937          20 RYCKICGKHYSNSSNLKQHIR   40 (147)
Q Consensus        20 ~~C~~C~~~f~~~~~l~~h~~   40 (147)
                      |+|..|.+.|..++.|.+|++
T Consensus         1 ykcglcersfveksalsrhqr   21 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQR   21 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGG
T ss_pred             CcccchHHHHHHHHHHHHHHH
Confidence            455666666666666666655

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.63  E-value=2.3e-05  Score=30.61  Aligned_cols=25  Identities=32%  Similarity=0.389  Sum_probs=20.1

Q ss_pred             CcccCC--CchhccCChHHHHhHHHhh
Q psy8937         118 GILFCP--LCQKCFKNKLYLRRHVISF  142 (147)
Q Consensus       118 ~~~~C~--~C~~~f~~~~~l~~H~~~~  142 (147)
                      .||+|+  .|++.|+..+.|.+|-++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            478884  5888888888888888776

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=6.4e-06  Score=33.16  Aligned_cols=26  Identities=23%  Similarity=0.401  Sum_probs=19.0

Q ss_pred             CcccCCC--chhccCChHHHHhHH-Hhhh
Q psy8937         118 GILFCPL--CQKCFKNKLYLRRHV-ISFH  143 (147)
Q Consensus       118 ~~~~C~~--C~~~f~~~~~l~~H~-~~~h  143 (147)
                      +||.|+.  |.|.|+..+....|+ |+|-
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs   29 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHS   29 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTC
T ss_pred             CCccccCCChhhhhcchhhhhhhcccccc
Confidence            5777755  888888888888886 6654

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=97.53  E-value=3.3e-05  Score=29.10  Aligned_cols=24  Identities=38%  Similarity=0.640  Sum_probs=21.8

Q ss_pred             ccCCCchhccCChHHHHhHHHhhh
Q psy8937         120 LFCPLCQKCFKNKLYLRRHVISFH  143 (147)
Q Consensus       120 ~~C~~C~~~f~~~~~l~~H~~~~h  143 (147)
                      |.|+.|=+.|.++.++..|.++-|
T Consensus         2 ypcp~cfkeftrkdnm~ahvkiih   25 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKIIH   25 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHHT
T ss_pred             cCCchhhHHhccccCceEEEEEec
Confidence            789999999999999999998765

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.49  E-value=2e-05  Score=31.66  Aligned_cols=26  Identities=23%  Similarity=0.545  Sum_probs=15.8

Q ss_pred             cccccccccccCChHHHHHHHHHhcC
Q psy8937          19 ARYCKICGKHYSNSSNLKQHIRLIHL   44 (147)
Q Consensus        19 ~~~C~~C~~~f~~~~~l~~h~~~~~~   44 (147)
                      ||.|.+|++.|.....|.+|...-|+
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~   26 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHS   26 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhc
Confidence            45666666666666666666554443

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=7.6e-05  Score=29.31  Aligned_cols=28  Identities=36%  Similarity=0.564  Sum_probs=20.9

Q ss_pred             CcccccccccccCChHHHHHHHHHhcCC
Q psy8937          18 DARYCKICGKHYSNSSNLKQHIRLIHLP   45 (147)
Q Consensus        18 ~~~~C~~C~~~f~~~~~l~~h~~~~~~~   45 (147)
                      ++|.|..|.......++|..|+...|+.
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhsk   28 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHSK   28 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSS
T ss_pred             CCccccccccccccchhhhhhhhccccc
Confidence            4678888888877788888887766643

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=5.2e-05  Score=29.34  Aligned_cols=25  Identities=24%  Similarity=0.200  Sum_probs=21.5

Q ss_pred             cccCCCchhccCChHHHHhHHHhhh
Q psy8937         119 ILFCPLCQKCFKNKLYLRRHVISFH  143 (147)
Q Consensus       119 ~~~C~~C~~~f~~~~~l~~H~~~~h  143 (147)
                      |-+|+.|.++.+++..|+-|-|+|-
T Consensus         2 pekc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGGC
T ss_pred             CccCcccccccCcHHHHHHhhcccc
Confidence            5679999999999999999988874

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=4.2e-05  Score=32.96  Aligned_cols=26  Identities=19%  Similarity=0.562  Sum_probs=23.1

Q ss_pred             CcCCcccccccccCCChHHHHHHHHH
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRL  113 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~  113 (147)
                      +.+||.|..|++.|.+...+.+|...
T Consensus         2 GiKPYeC~~C~KrFMWRDSF~RH~~~   27 (44)
T d2csha2           2 GIKPYECNICAKRFMWRDSFHRHVTS   27 (44)
T ss_dssp             CCCCEECSSSCCEESCHHHHHHHHHH
T ss_pred             CCCceeccchhhhhhhHHHHHHhhhh
Confidence            56889999999999999999998753

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.42  E-value=4.9e-05  Score=29.19  Aligned_cols=22  Identities=36%  Similarity=0.671  Sum_probs=19.2

Q ss_pred             cccCCCchhccCChHHHHhHHH
Q psy8937         119 ILFCPLCQKCFKNKLYLRRHVI  140 (147)
Q Consensus       119 ~~~C~~C~~~f~~~~~l~~H~~  140 (147)
                      ||+|..||+.+-++.+|..|-.
T Consensus         1 pf~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHH
Confidence            6899999999999999988854

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=4.2e-05  Score=29.51  Aligned_cols=26  Identities=31%  Similarity=0.594  Sum_probs=23.8

Q ss_pred             CCcccccccccCCChHHHHHHHHHHh
Q psy8937          90 DARYCKICGKHYSNSSNLKQHIRLIH  115 (147)
Q Consensus        90 ~~~~C~~c~~~~~~~~~l~~H~~~~~  115 (147)
                      +||+|..|...-..++.|..|+++|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            68899999999999999999999874

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=7.8e-05  Score=29.23  Aligned_cols=26  Identities=27%  Similarity=0.491  Sum_probs=16.9

Q ss_pred             cccccccccccCChHHHHHHHHHhcC
Q psy8937          19 ARYCKICGKHYSNSSNLKQHIRLIHL   44 (147)
Q Consensus        19 ~~~C~~C~~~f~~~~~l~~h~~~~~~   44 (147)
                      ||+|..|...-.+.++|..|+...|+
T Consensus         2 PFkC~~CsFDtkq~SnL~kH~kk~H~   27 (29)
T d1x5wa2           2 PFKCNYCSFDTKQPSNLSKHMKKFHG   27 (29)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CcccceecccccCcchHHHHHHHHcc
Confidence            56666666666666666666665543

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.27  E-value=9e-05  Score=27.74  Aligned_cols=22  Identities=18%  Similarity=0.597  Sum_probs=17.4

Q ss_pred             cccccccccccCChHHHHHHHH
Q psy8937          19 ARYCKICGKHYSNSSNLKQHIR   40 (147)
Q Consensus        19 ~~~C~~C~~~f~~~~~l~~h~~   40 (147)
                      +|+|..|...|-.+..|+.|+-
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            6778888888888888888774

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=6.2e-05  Score=30.92  Aligned_cols=23  Identities=26%  Similarity=0.574  Sum_probs=20.1

Q ss_pred             cccCCCchhccCChHHHHhHHHh
Q psy8937         119 ILFCPLCQKCFKNKLYLRRHVIS  141 (147)
Q Consensus       119 ~~~C~~C~~~f~~~~~l~~H~~~  141 (147)
                      .|.|+.|++.|.++..+.+|--.
T Consensus         4 afvcskcgktftrrntm~rha~n   26 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADN   26 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHH
T ss_pred             eeeecccccchhcchHHHHHhhh
Confidence            48899999999999999998654

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=97.15  E-value=0.00016  Score=27.13  Aligned_cols=25  Identities=28%  Similarity=0.741  Sum_probs=20.5

Q ss_pred             cccccccccccCChHHHHHHHHHhc
Q psy8937          19 ARYCKICGKHYSNSSNLKQHIRLIH   43 (147)
Q Consensus        19 ~~~C~~C~~~f~~~~~l~~h~~~~~   43 (147)
                      .|.|+.|-+.|..+.++..|..+.|
T Consensus         1 vypcp~cfkeftrkdnm~ahvkiih   25 (26)
T d2drpa2           1 VYPCPFCFKEFTRKDNMTAHVKIIH   25 (26)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHHHT
T ss_pred             CcCCchhhHHhccccCceEEEEEec
Confidence            3779999999999999988887654

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=0.0002  Score=27.52  Aligned_cols=25  Identities=28%  Similarity=0.546  Sum_probs=20.1

Q ss_pred             ccCCCchhccCChHHHHhHHHhhhc
Q psy8937         120 LFCPLCQKCFKNKLYLRRHVISFHE  144 (147)
Q Consensus       120 ~~C~~C~~~f~~~~~l~~H~~~~h~  144 (147)
                      |+|+.|+-...+++.|.-|++..|.
T Consensus         3 ~qcphc~tiiarksdlrvhlrnlhs   27 (28)
T d2ct1a1           3 FHCPHCDTVIARKSDLGVHLRKQHS   27 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHHHTSC
T ss_pred             ccCCcchhheeehhhhhHHhhhccc
Confidence            7788888888888888888887653

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.02  E-value=0.00026  Score=27.56  Aligned_cols=23  Identities=35%  Similarity=0.553  Sum_probs=11.1

Q ss_pred             CcCCCC--chhhhcChHHHHHHHhh
Q psy8937          47 ILFCPL--CQKCFKNKLYLRRHVGT   69 (147)
Q Consensus        47 ~~~C~~--C~~~f~~~~~l~~H~~~   69 (147)
                      ||.|+.  |++.|...+.|++|..+
T Consensus         3 py~c~hegcdk~fs~ps~lkrhekv   27 (29)
T d2j7ja2           3 PYECPHEGCDKRFSLPSRLKRHEKV   27 (29)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHH
T ss_pred             CccCCccCccccccCHHHHhhhhhc
Confidence            444432  55555555555555443

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.01  E-value=0.0003  Score=29.83  Aligned_cols=26  Identities=27%  Similarity=0.430  Sum_probs=16.1

Q ss_pred             CCcccC--CCchhccCChHHHHhHHHhh
Q psy8937         117 PGILFC--PLCQKCFKNKLYLRRHVISF  142 (147)
Q Consensus       117 ~~~~~C--~~C~~~f~~~~~l~~H~~~~  142 (147)
                      ++||.|  +.|+..|.....|.-|...|
T Consensus         4 dkPF~C~~pGC~q~F~neDhL~vHk~KH   31 (38)
T d1bhia_           4 DKPFLCTAPGCGQRFTNEDHLAVHKHKH   31 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHHHHH
T ss_pred             CCceecCCCCccccccchHHHHHhhhhh
Confidence            566666  55666666666666665544

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.00033  Score=29.02  Aligned_cols=19  Identities=21%  Similarity=0.273  Sum_probs=10.1

Q ss_pred             hccCChHHHHhHHHhhhcc
Q psy8937         127 KCFKNKLYLRRHVISFHEN  145 (147)
Q Consensus       127 ~~f~~~~~l~~H~~~~h~~  145 (147)
                      +.|.....|..|||+|+||
T Consensus        15 ~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          15 RPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CCCSSHHHHHHHTHHHHCC
T ss_pred             CcchhHHHHHHHHhhcCCC
Confidence            4455555555555555553

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.91  E-value=0.00032  Score=26.85  Aligned_cols=21  Identities=38%  Similarity=0.627  Sum_probs=11.3

Q ss_pred             cccccccccccCChHHHHHHH
Q psy8937          19 ARYCKICGKHYSNSSNLKQHI   39 (147)
Q Consensus        19 ~~~C~~C~~~f~~~~~l~~h~   39 (147)
                      ||.|..||+.+..+.+|..|.
T Consensus         1 pf~c~kcgkcyfrkenllehe   21 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHE   21 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHH
Confidence            355555555555555555553

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.00067  Score=30.21  Aligned_cols=24  Identities=29%  Similarity=0.636  Sum_probs=14.2

Q ss_pred             cccccccccccCChHHHHHHHHHh
Q psy8937          19 ARYCKICGKHYSNSSNLKQHIRLI   42 (147)
Q Consensus        19 ~~~C~~C~~~f~~~~~l~~h~~~~   42 (147)
                      .|.|..|++.|.....|+.|...|
T Consensus         6 l~pCG~CgK~Ftd~~rLr~HEAQH   29 (53)
T d2eppa1           6 ILPCGLCGKVFTDANRLRQHEAQH   29 (53)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHHHHH
T ss_pred             eeeccccccccCCHHHHhHhHHhc
Confidence            455666666666666666665543

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.72  E-value=0.00068  Score=26.90  Aligned_cols=28  Identities=14%  Similarity=0.374  Sum_probs=21.9

Q ss_pred             CcccC--CCchhccCChHHHHhHHHhhhcc
Q psy8937         118 GILFC--PLCQKCFKNKLYLRRHVISFHEN  145 (147)
Q Consensus       118 ~~~~C--~~C~~~f~~~~~l~~H~~~~h~~  145 (147)
                      +.|.|  +.|+..|....-|..|+-.|+||
T Consensus         2 k~~iCsf~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           2 KRYICSFADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CCEECSSGGGCCEESSHHHHHHHHHHHHCC
T ss_pred             CceEeeCCCcchhhccchhhhHHhhhhcCC
Confidence            45777  45888888888888888888875

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.71  E-value=0.00066  Score=28.74  Aligned_cols=28  Identities=21%  Similarity=0.426  Sum_probs=20.7

Q ss_pred             ccCcccc--cccccccCChHHHHHHHHHhc
Q psy8937          16 SLDARYC--KICGKHYSNSSNLKQHIRLIH   43 (147)
Q Consensus        16 ~~~~~~C--~~C~~~f~~~~~l~~h~~~~~   43 (147)
                      .++||.|  +-|+..|.+...|..|...|.
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhhe
Confidence            3678888  458888888888888876554

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.71  E-value=0.00062  Score=26.13  Aligned_cols=25  Identities=28%  Similarity=0.464  Sum_probs=19.5

Q ss_pred             cccccccccccCChHHHHHHHHHhc
Q psy8937          19 ARYCKICGKHYSNSSNLKQHIRLIH   43 (147)
Q Consensus        19 ~~~C~~C~~~f~~~~~l~~h~~~~~   43 (147)
                      .|.|+.|+.....++.|..|++.-|
T Consensus         2 k~qcphc~tiiarksdlrvhlrnlh   26 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRKQH   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHTS
T ss_pred             CccCCcchhheeehhhhhHHhhhcc
Confidence            4778888888888888888887543

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.66  E-value=0.00062  Score=27.86  Aligned_cols=27  Identities=22%  Similarity=0.444  Sum_probs=19.5

Q ss_pred             CcccccccccccCChHHHHHHHHHhcC
Q psy8937          18 DARYCKICGKHYSNSSNLKQHIRLIHL   44 (147)
Q Consensus        18 ~~~~C~~C~~~f~~~~~l~~h~~~~~~   44 (147)
                      ..|+|..|++.|.....+.+|.....+
T Consensus         3 ~afvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           3 AAFVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             CCEECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             ceeeecccccchhcchHHHHHhhhcCC
Confidence            357788888888888888877764443

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.59  E-value=0.0013  Score=29.18  Aligned_cols=31  Identities=26%  Similarity=0.401  Sum_probs=20.8

Q ss_pred             CCCcccCCCchhccCChHHHHhHHHhhhccC
Q psy8937         116 LPGILFCPLCQKCFKNKLYLRRHVISFHENA  146 (147)
Q Consensus       116 ~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~  146 (147)
                      .++|..|++|+....+..+|++|+..-|=.+
T Consensus        21 s~qpatcpic~avirqsrnlrrhlel~hf~k   51 (54)
T d1yuja_          21 SEQPATCPICYAVIRQSRNLRRHLELRHFAK   51 (54)
T ss_dssp             TSCCEECTTTCCEESSHHHHHHHHHHHTSCS
T ss_pred             ccCCCCCchHHHHHHHHHHHHHHHHHHhhcc
Confidence            3566677777777777777777776655443

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.52  E-value=0.00092  Score=26.05  Aligned_cols=28  Identities=21%  Similarity=0.269  Sum_probs=23.1

Q ss_pred             CCcccc--cccccCCChHHHHHHHHHHhCC
Q psy8937          90 DARYCK--ICGKHYSNSSNLKQHIRLIHLP  117 (147)
Q Consensus        90 ~~~~C~--~c~~~~~~~~~l~~H~~~~~~~  117 (147)
                      +||.|.  .|.+.|.+...|.+|...|.+|
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            355664  4999999999999999999875

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.50  E-value=0.00022  Score=28.56  Aligned_cols=26  Identities=31%  Similarity=0.567  Sum_probs=20.6

Q ss_pred             CCccccc--ccccCCChHHHHHHH-HHHh
Q psy8937          90 DARYCKI--CGKHYSNSSNLKQHI-RLIH  115 (147)
Q Consensus        90 ~~~~C~~--c~~~~~~~~~l~~H~-~~~~  115 (147)
                      +||.|..  |.+.|.+.+.-..|+ ++|.
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs   29 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHS   29 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTC
T ss_pred             CCccccCCChhhhhcchhhhhhhcccccc
Confidence            4677866  999999999988887 5543

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.35  E-value=0.00094  Score=25.69  Aligned_cols=23  Identities=26%  Similarity=0.281  Sum_probs=14.9

Q ss_pred             cCCCCchhhhcChHHHHHHHhhh
Q psy8937          48 LFCPLCQKCFKNKLYLRRHVGTY   70 (147)
Q Consensus        48 ~~C~~C~~~f~~~~~l~~H~~~~   70 (147)
                      -+|+.|..+..++..|+.|.+.|
T Consensus         3 ekc~ecsyscsskaalrvh~rih   25 (28)
T d1x5wa1           3 EKCSECSYSCSSKAALRIHERIH   25 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHGGG
T ss_pred             ccCcccccccCcHHHHHHhhccc
Confidence            35677777777777777666543

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.35  E-value=0.0013  Score=27.17  Aligned_cols=24  Identities=17%  Similarity=0.124  Sum_probs=20.5

Q ss_pred             cccccccCCChHHHHHHHHHHhCC
Q psy8937          94 CKICGKHYSNSSNLKQHIRLIHLP  117 (147)
Q Consensus        94 C~~c~~~~~~~~~l~~H~~~~~~~  117 (147)
                      |+.-++.|.....|..|+++|++|
T Consensus        10 C~R~~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          10 CSRELRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CTTTTCCCSSHHHHHHHTHHHHCC
T ss_pred             CCCCCCcchhHHHHHHHHhhcCCC
Confidence            555567899999999999999986

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.22  E-value=0.0031  Score=28.01  Aligned_cols=27  Identities=26%  Similarity=0.572  Sum_probs=22.0

Q ss_pred             CCcccccccccCCChHHHHHHHHHHhC
Q psy8937          90 DARYCKICGKHYSNSSNLKQHIRLIHL  116 (147)
Q Consensus        90 ~~~~C~~c~~~~~~~~~l~~H~~~~~~  116 (147)
                      ..|.|..|++.|.....|+.|-..|..
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HEAQHG~   31 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHEAQHGV   31 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHHHTT
T ss_pred             ceeeccccccccCCHHHHhHhHHhcCc
Confidence            456799999999999999999887653

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.12  E-value=0.0015  Score=25.18  Aligned_cols=19  Identities=26%  Similarity=0.614  Sum_probs=15.9

Q ss_pred             CchhccCChHHHHhHHHhh
Q psy8937         124 LCQKCFKNKLYLRRHVISF  142 (147)
Q Consensus       124 ~C~~~f~~~~~l~~H~~~~  142 (147)
                      .|++.|...+.++.|+.+|
T Consensus         8 gC~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           8 GCTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             TCCCEESSHHHHHHHHGGG
T ss_pred             cHHHHhhchHHHHHHhhcc
Confidence            5888888888888888775

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.04  E-value=0.0082  Score=26.51  Aligned_cols=31  Identities=32%  Similarity=0.537  Sum_probs=24.9

Q ss_pred             ccCcccccccccccCChHHHHHHHHHhcCCC
Q psy8937          16 SLDARYCKICGKHYSNSSNLKQHIRLIHLPG   46 (147)
Q Consensus        16 ~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~   46 (147)
                      ++.+-.|++|+....+..+|++|+...|-.+
T Consensus        21 s~qpatcpic~avirqsrnlrrhlel~hf~k   51 (54)
T d1yuja_          21 SEQPATCPICYAVIRQSRNLRRHLELRHFAK   51 (54)
T ss_dssp             TSCCEECTTTCCEESSHHHHHHHHHHHTSCS
T ss_pred             ccCCCCCchHHHHHHHHHHHHHHHHHHhhcc
Confidence            5678889999998888888988888766544

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.99  E-value=0.007  Score=23.47  Aligned_cols=26  Identities=27%  Similarity=0.480  Sum_probs=19.6

Q ss_pred             cccccccccccCChHHHHHHHHHhcC
Q psy8937          19 ARYCKICGKHYSNSSNLKQHIRLIHL   44 (147)
Q Consensus        19 ~~~C~~C~~~f~~~~~l~~h~~~~~~   44 (147)
                      .|.|..||+...+..-++.|...-|.
T Consensus         2 ~ftc~hcgkqlks~~gmkyhvmadhn   27 (30)
T d2ctda2           2 MFTCHHCGKQLRSLAGMKYHVMANHN   27 (30)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHTC
T ss_pred             ceechhHHHHHhhccCceEEEeeccc
Confidence            47788888888888888888765443

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.78  E-value=0.0042  Score=25.41  Aligned_cols=30  Identities=27%  Similarity=0.490  Sum_probs=24.0

Q ss_pred             ccCcccccccccccCChHHHHHHHHHhcCC
Q psy8937          16 SLDARYCKICGKHYSNSSNLKQHIRLIHLP   45 (147)
Q Consensus        16 ~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~   45 (147)
                      ++..|.|.+|.+.+...+++-+|....|..
T Consensus         5 g~~~yRC~~C~r~YTHISNFCRHyvtSHk~   34 (37)
T d2drpa1           5 GEHTYRCKVCSRVYTHISNFCRHYVTSHKR   34 (37)
T ss_dssp             ETTEEECTTTCCEESSHHHHHHHHHHHSSS
T ss_pred             cCcEEEeehhhHHHHHHHHHHHHHHhhccc
Confidence            456788999999999999988888766544

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.74  E-value=0.0041  Score=23.59  Aligned_cols=21  Identities=33%  Similarity=0.471  Sum_probs=15.8

Q ss_pred             CCchhccCChHHHHhHHHhhh
Q psy8937         123 PLCQKCFKNKLYLRRHVISFH  143 (147)
Q Consensus       123 ~~C~~~f~~~~~l~~H~~~~h  143 (147)
                      +.|++.|.....|.-|..+|+
T Consensus         7 e~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           7 ENCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             TTCCCEESSHHHHHHHHHHHH
T ss_pred             cCchHHHhhccceEEEeeccc
Confidence            458888888888887777764

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.68  E-value=0.0037  Score=25.24  Aligned_cols=20  Identities=25%  Similarity=0.519  Sum_probs=10.4

Q ss_pred             ccCCCchhccCChHHHHhHH
Q psy8937         120 LFCPLCQKCFKNKLYLRRHV  139 (147)
Q Consensus       120 ~~C~~C~~~f~~~~~l~~H~  139 (147)
                      |.|+-||..|++.+.|..|+
T Consensus         9 f~c~pcgirfss~stleahq   28 (36)
T d1y0jb1           9 FMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             CBCTTTCCBCSCHHHHHHHT
T ss_pred             eeccccceeecChhHHHhhh
Confidence            44555555555555555543

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.64  E-value=0.002  Score=30.96  Aligned_cols=44  Identities=11%  Similarity=0.391  Sum_probs=31.7

Q ss_pred             CCccCccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCchhhh
Q psy8937          11 SKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKCF   57 (147)
Q Consensus        11 ~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C~~~f   57 (147)
                      .+...+...|+|+.|++.|....+++.   .-.....|.|..|+...
T Consensus         6 ~rd~~~~~~y~Cp~C~~~ys~Lda~~L---~d~~~~~F~C~~C~~el   49 (62)
T d1vd4a_           6 ERDSTNRASFKCPVCSSTFTDLEANQL---FDPMTGTFRCTFCHTEV   49 (62)
T ss_dssp             SSSCCSSSEEECSSSCCEEEHHHHHHH---EETTTTEEBCSSSCCBC
T ss_pred             hhccccCCceECCCCCCCcchhhHHHh---cCcCCCeEEecCCCCEE
Confidence            344456789999999999977666543   23445778999998654

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.24  E-value=0.015  Score=22.52  Aligned_cols=22  Identities=23%  Similarity=0.525  Sum_probs=10.6

Q ss_pred             ccCCCchhccCChHHHHhHHHh
Q psy8937         120 LFCPLCQKCFKNKLYLRRHVIS  141 (147)
Q Consensus       120 ~~C~~C~~~f~~~~~l~~H~~~  141 (147)
                      |.|..||+...+...+.-|+-.
T Consensus         3 ftc~hcgkqlks~~gmkyhvma   24 (30)
T d2ctda2           3 FTCHHCGKQLRSLAGMKYHVMA   24 (30)
T ss_dssp             CCCSSSCCCCSSHHHHHHHHHH
T ss_pred             eechhHHHHHhhccCceEEEee
Confidence            4445555555555554444433

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.23  E-value=0.0058  Score=29.81  Aligned_cols=25  Identities=32%  Similarity=0.623  Sum_probs=22.2

Q ss_pred             ccCcccccccccccCChHHHHHHHH
Q psy8937          16 SLDARYCKICGKHYSNSSNLKQHIR   40 (147)
Q Consensus        16 ~~~~~~C~~C~~~f~~~~~l~~h~~   40 (147)
                      +...|.|..|++.|.+...|..|.+
T Consensus        12 G~gqfYCv~C~K~F~se~~l~~H~k   36 (67)
T d1zr9a1          12 GGGLHRCLACARYFIDSTNLKTHFR   36 (67)
T ss_dssp             GGGCSEETTTTEECSSHHHHHHHTT
T ss_pred             CCCEEecccccCccCCHHHHHHHHc
Confidence            5677999999999999999998876

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.19  E-value=0.0056  Score=24.67  Aligned_cols=24  Identities=29%  Similarity=0.490  Sum_probs=19.8

Q ss_pred             cCcccccccccccCChHHHHHHHH
Q psy8937          17 LDARYCKICGKHYSNSSNLKQHIR   40 (147)
Q Consensus        17 ~~~~~C~~C~~~f~~~~~l~~h~~   40 (147)
                      ...|.|.-||-.|++.+.|..|+.
T Consensus         6 parf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           6 PARFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCCCBCTTTCCBCSCHHHHHHHTT
T ss_pred             ccceeccccceeecChhHHHhhhh
Confidence            346889999999999998888865

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.88  E-value=0.021  Score=27.12  Aligned_cols=31  Identities=19%  Similarity=0.462  Sum_probs=25.8

Q ss_pred             ccCccCcccccccccccCChHHHHHHHHHhc
Q psy8937          13 PLHSLDARYCKICGKHYSNSSNLKQHIRLIH   43 (147)
Q Consensus        13 ~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~   43 (147)
                      .......|+|..|+..|.....|..|+..|.
T Consensus        12 ~~~~s~~yQC~HCd~K~~s~~el~~hl~~hn   42 (75)
T d1x6fa1          12 PRLQNSTYQCKHCDSKLQSTAELTSHLNIHN   42 (75)
T ss_dssp             SCCCCSCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             cccCCceeeechhHHHHhhHHHHHHHHHhcc
Confidence            3445677999999999999999999998665

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.84  E-value=0.0038  Score=30.46  Aligned_cols=25  Identities=32%  Similarity=0.623  Sum_probs=16.6

Q ss_pred             CcCCcccccccccCCChHHHHHHHH
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIR  112 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~  112 (147)
                      +...|-|..|++.|.+...|..|.+
T Consensus        12 G~gqfYCv~C~K~F~se~~l~~H~k   36 (67)
T d1zr9a1          12 GGGLHRCLACARYFIDSTNLKTHFR   36 (67)
T ss_dssp             GGGCSEETTTTEECSSHHHHHHHTT
T ss_pred             CCCEEecccccCccCCHHHHHHHHc
Confidence            4445667777777777777776654

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=94.57  E-value=0.02  Score=22.13  Aligned_cols=26  Identities=27%  Similarity=0.576  Sum_probs=20.7

Q ss_pred             cccC--CCchhccCChHHHHhHHHhhhc
Q psy8937         119 ILFC--PLCQKCFKNKLYLRRHVISFHE  144 (147)
Q Consensus       119 ~~~C--~~C~~~f~~~~~l~~H~~~~h~  144 (147)
                      .|.|  ..|+..|..+..+..|....|.
T Consensus         2 nf~cdsd~cdl~fttkanmkkhfnrfhn   29 (31)
T d1tf3a3           2 NFTCDSDGCDLRFTTKANMKKHFNRFHN   29 (31)
T ss_dssp             CEECSSSSCCCEESSHHHHHHHHHHHTT
T ss_pred             CccccCCCcceEEeehHHHHHHHhhhcc
Confidence            4666  4699999999999999887664

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.21  E-value=0.011  Score=28.08  Aligned_cols=28  Identities=18%  Similarity=0.434  Sum_probs=17.9

Q ss_pred             cCCcccccccccCCChHHHHHHHHHHhC
Q psy8937          89 LDARYCKICGKHYSNSSNLKQHIRLIHL  116 (147)
Q Consensus        89 ~~~~~C~~c~~~~~~~~~l~~H~~~~~~  116 (147)
                      ...|.|..|...|.+...|..|+..|..
T Consensus        16 s~~yQC~HCd~K~~s~~el~~hl~~hne   43 (75)
T d1x6fa1          16 NSTYQCKHCDSKLQSTAELTSHLNIHNE   43 (75)
T ss_dssp             CSCEECSSSCCEESSHHHHHHHHHHHHH
T ss_pred             CceeeechhHHHHhhHHHHHHHHHhccH
Confidence            3456666676666666666666666543

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=94.18  E-value=0.017  Score=23.55  Aligned_cols=25  Identities=28%  Similarity=0.579  Sum_probs=13.4

Q ss_pred             CCcccccccccCCChHHHHHHHHHH
Q psy8937          90 DARYCKICGKHYSNSSNLKQHIRLI  114 (147)
Q Consensus        90 ~~~~C~~c~~~~~~~~~l~~H~~~~  114 (147)
                      ..|+|..|.+.|...+.+-+|...-
T Consensus         7 ~~yRC~~C~r~YTHISNFCRHyvtS   31 (37)
T d2drpa1           7 HTYRCKVCSRVYTHISNFCRHYVTS   31 (37)
T ss_dssp             TEEECTTTCCEESSHHHHHHHHHHH
T ss_pred             cEEEeehhhHHHHHHHHHHHHHHhh
Confidence            3455555555555555555555443

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.41  E-value=0.011  Score=28.26  Aligned_cols=38  Identities=13%  Similarity=0.454  Sum_probs=27.8

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhCCCcccCCCchhc
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQKC  128 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~~~~~~C~~C~~~  128 (147)
                      ...-|.|+.|++.|.....+..   .......|.|..|+-.
T Consensus        11 ~~~~y~Cp~C~~~ys~Lda~~L---~d~~~~~F~C~~C~~e   48 (62)
T d1vd4a_          11 NRASFKCPVCSSTFTDLEANQL---FDPMTGTFRCTFCHTE   48 (62)
T ss_dssp             SSSEEECSSSCCEEEHHHHHHH---EETTTTEEBCSSSCCB
T ss_pred             cCCceECCCCCCCcchhhHHHh---cCcCCCeEEecCCCCE
Confidence            4566899999999887766543   3445567999999854

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.23  E-value=0.038  Score=21.24  Aligned_cols=20  Identities=35%  Similarity=0.629  Sum_probs=13.3

Q ss_pred             CCchhccCChHHHHhHHHhh
Q psy8937         123 PLCQKCFKNKLYLRRHVISF  142 (147)
Q Consensus       123 ~~C~~~f~~~~~l~~H~~~~  142 (147)
                      +.||+.|+.+..|.-|.+-.
T Consensus         6 ~gc~kifsnrqylnhh~kyq   25 (30)
T d2dlka1           6 PGCGRIFSNRQYLNHHKKYQ   25 (30)
T ss_dssp             TTTCCEESSHHHHHHHHHHG
T ss_pred             CCchhhhccHHHHHhHHHHH
Confidence            45777777777776665543

>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Nigerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=93.23  E-value=0.016  Score=24.46  Aligned_cols=27  Identities=26%  Similarity=0.568  Sum_probs=19.5

Q ss_pred             ccCcccccccccccCChHHHHHHHHHhcCCCCcCCCCchh
Q psy8937          16 SLDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQK   55 (147)
Q Consensus        16 ~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C~~   55 (147)
                      +++.|+|.+||...             .+..|-+|++|+-
T Consensus         2 ~~~~~vC~vCGyi~-------------~g~~Pe~CPvCg~   28 (36)
T d1yuza2           2 DDKFHLCPICGYIH-------------KGEDFEKCPICFR   28 (36)
T ss_dssp             SCCEEECSSSCCEE-------------ESSCCSBCTTTCC
T ss_pred             CCCEEECCCCCCEe-------------eCCCCCcCCCCCC
Confidence            35678899999863             3456678999874

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.93  E-value=0.018  Score=24.46  Aligned_cols=26  Identities=27%  Similarity=0.630  Sum_probs=19.0

Q ss_pred             cCcccccccccccCChHHHHHHHHHhcCCCCcCCCCchh
Q psy8937          17 LDARYCKICGKHYSNSSNLKQHIRLIHLPGILFCPLCQK   55 (147)
Q Consensus        17 ~~~~~C~~C~~~f~~~~~l~~h~~~~~~~~~~~C~~C~~   55 (147)
                      ...|+|.+||..+             .+..|-.||+|+-
T Consensus         3 ~~~~~C~vCG~i~-------------~g~~P~~CPvCg~   28 (37)
T d1nnqa2           3 KKVYICPICGYTA-------------VDEAPEYCPVCGA   28 (37)
T ss_dssp             SCEEECTTTCCEE-------------ESCCCSBCTTTCC
T ss_pred             CcEEECCCCCCEe-------------cCCCCCcCCCCCC
Confidence            4578899999863             3456778998874

>d1fu9a_ g.37.1.2 (A:) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.71  E-value=0.05  Score=22.40  Aligned_cols=18  Identities=22%  Similarity=0.431  Sum_probs=9.3

Q ss_pred             CCCchhccCChHHHHhHH
Q psy8937         122 CPLCQKCFKNKLYLRRHV  139 (147)
Q Consensus       122 C~~C~~~f~~~~~l~~H~  139 (147)
                      |..|+..|.+...++.|.
T Consensus        11 C~~CDI~Fn~~~T~~aHK   28 (36)
T d1fu9a_          11 CSTCDISFNYVKTYLAHK   28 (36)
T ss_dssp             ETTTTEECSSHHHHHHHH
T ss_pred             HhhCCceehhHHHHHHHH
Confidence            455555555555555544

>d1wjpa3 g.37.1.1 (A:67-107) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 295, ZNF295
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.65  E-value=0.041  Score=22.62  Aligned_cols=25  Identities=28%  Similarity=0.662  Sum_probs=14.7

Q ss_pred             cCCCchhccCChHHHHhHHHhhhcc
Q psy8937         121 FCPLCQKCFKNKLYLRRHVISFHEN  145 (147)
Q Consensus       121 ~C~~C~~~f~~~~~l~~H~~~~h~~  145 (147)
                      .|-+|-+.|.+..++-+|+...|.+
T Consensus         5 tclecmrtfkssfsiwrhqvevhnq   29 (41)
T d1wjpa3           5 TCLECMRTFKSSFSIWRHQVEVHNQ   29 (41)
T ss_dssp             EEGGGTEECSSHHHHHHHHHHTSCC
T ss_pred             cHHHHHHHHHHHHHHHHhhheeccc
Confidence            4556666666666666665555544

>d1m36a_ g.37.1.2 (A:) Monocytic leukemia zinc finger protein Moz {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: Monocytic leukemia zinc finger protein Moz
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.88  E-value=0.085  Score=21.53  Aligned_cols=25  Identities=28%  Similarity=0.745  Sum_probs=20.2

Q ss_pred             CCcccCCCchhccCChHHHHhHHHh
Q psy8937         117 PGILFCPLCQKCFKNKLYLRRHVIS  141 (147)
Q Consensus       117 ~~~~~C~~C~~~f~~~~~l~~H~~~  141 (147)
                      .+.|.|+.|-+-..+...|.+|+..
T Consensus         5 pkLyiCEfCLKYmks~~~l~RH~~K   29 (33)
T d1m36a_           5 PKLYLCEFCLKYMKSRTILQQHMKK   29 (33)
T ss_dssp             CCCEECSSSCCEESCHHHHHHHHHH
T ss_pred             CeeeeehhhhhhhCCHHHHHHHHHh
Confidence            4568888888888888888888753

>d1x3ca1 g.37.1.1 (A:8-68) Zinc finger protein 292, ZNF292 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 292, ZNF292
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.34  E-value=0.19  Score=22.56  Aligned_cols=30  Identities=20%  Similarity=0.311  Sum_probs=17.8

Q ss_pred             CCcCCcccc--cccccCCChHHHHHHHHHHhC
Q psy8937          87 HSLDARYCK--ICGKHYSNSSNLKQHIRLIHL  116 (147)
Q Consensus        87 ~~~~~~~C~--~c~~~~~~~~~l~~H~~~~~~  116 (147)
                      ..-+||.|.  .|...|.-...|..|.+..+.
T Consensus        16 spyrpyrcvhqgc~aaftiq~nlilhy~avh~   47 (61)
T d1x3ca1          16 SPYRPYRCVHQGCFAAFTIQQNLILHYQAVHK   47 (61)
T ss_dssp             CSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSS
T ss_pred             CCCCceeeeccchhhhhhhhhhHHHHHHHHhh
Confidence            344666663  366666666666666665443

>d1wjpa1 g.37.1.1 (A:1-42) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 295, ZNF295
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.25  E-value=0.29  Score=20.25  Aligned_cols=33  Identities=21%  Similarity=0.515  Sum_probs=24.4

Q ss_pred             CCCCCccCccCcccccccccccCChHHHHHHHH
Q psy8937           8 PGGSKPLHSLDARYCKICGKHYSNSSNLKQHIR   40 (147)
Q Consensus         8 ~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~   40 (147)
                      ..+..+..+...|.|..|+..+.....--.|.+
T Consensus         5 ssga~pvenke~y~crlcnakl~slleqgnher   37 (42)
T d1wjpa1           5 SSGASPVENKEVYQCRLCNAKLSSLLEQGSHER   37 (42)
T ss_dssp             CCCCCCCCCCCCCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCCCCcccccceeeeeehhhhHHHHHHcccHHh
Confidence            345566677889999999999887665555544

>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: variant C2H2 finger
domain: Protein arginine N-methyltransferase 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.77  E-value=0.21  Score=27.14  Aligned_cols=37  Identities=19%  Similarity=0.425  Sum_probs=30.3

Q ss_pred             CCCCccCccCcccccccccccCChHHHHHHHHHhcCC
Q psy8937           9 GGSKPLHSLDARYCKICGKHYSNSSNLKQHIRLIHLP   45 (147)
Q Consensus         9 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~h~~~~~~~   45 (147)
                      ....+..+..+-+|-.|.+.|.+...+..|++..|.-
T Consensus         5 ~~~e~~~e~~~~~CLFCd~~f~s~~~~l~H~k~~H~F   41 (121)
T d1wira_           5 SSGEPAHGRQHTPCLFCDRLFASAEETFSHCKLEHQF   41 (121)
T ss_dssp             CCCCCCCCCCCEECSSSCCEESSHHHHHHHHHHSSCC
T ss_pred             ccCCCCCCcccceecccCCccCCHHHHHHHHHHhhCC
Confidence            3345556778889999999999999999999987763

>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: variant C2H2 finger
domain: Protein arginine N-methyltransferase 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.52  E-value=0.12  Score=28.22  Aligned_cols=29  Identities=17%  Similarity=0.415  Sum_probs=22.5

Q ss_pred             CcCCcccccccccCCChHHHHHHHHHHhC
Q psy8937          88 SLDARYCKICGKHYSNSSNLKQHIRLIHL  116 (147)
Q Consensus        88 ~~~~~~C~~c~~~~~~~~~l~~H~~~~~~  116 (147)
                      .+.+-.|..|.+.|.+...+..|++..++
T Consensus        12 e~~~~~CLFCd~~f~s~~~~l~H~k~~H~   40 (121)
T d1wira_          12 GRQHTPCLFCDRLFASAEETFSHCKLEHQ   40 (121)
T ss_dssp             CCCCEECSSSCCEESSHHHHHHHHHHSSC
T ss_pred             CcccceecccCCccCCHHHHHHHHHHhhC
Confidence            44555688888888888888888887665

>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger homeobox protein 4, ZFHX4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.02  E-value=0.042  Score=24.36  Aligned_cols=18  Identities=33%  Similarity=0.914  Sum_probs=9.3

Q ss_pred             ccccccccCCChHHHHHH
Q psy8937          93 YCKICGKHYSNSSNLKQH  110 (147)
Q Consensus        93 ~C~~c~~~~~~~~~l~~H  110 (147)
                      .|..|+..|.....++.|
T Consensus         8 eC~lC~vKYs~~~SvrdH   25 (48)
T d2yrka1           8 ECTLCGVKYSARLSIRDH   25 (48)
T ss_dssp             CCTTTTCCCCSSSCHHHH
T ss_pred             cCcccceeeeeecchHhh
Confidence            355555555555555544

>d2ct5a1 g.37.1.6 (A:8-67) Zinc finger BED domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: BED zinc finger
domain: Zinc finger BED domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.05  E-value=0.1  Score=24.26  Aligned_cols=24  Identities=21%  Similarity=0.440  Sum_probs=12.4

Q ss_pred             cCCCchhccCCh---HHHHhHHHhhhc
Q psy8937         121 FCPLCQKCFKNK---LYLRRHVISFHE  144 (147)
Q Consensus       121 ~C~~C~~~f~~~---~~l~~H~~~~h~  144 (147)
                      .|..|.+.+...   ++|..|++..|+
T Consensus        24 ~C~lC~k~i~~~GNTtNl~~HL~~rHp   50 (60)
T d2ct5a1          24 YCRICMAQIAYSGNTSNLSYHLEKNHP   50 (60)
T ss_dssp             EETTTTEECCCCSSTHHHHHHHHHSCH
T ss_pred             HHHHHHHHhcccCCcchHHHHHHhcCH
Confidence            355555555433   455566655554

>d1zu1a2 g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=86.15  E-value=0.52  Score=21.52  Aligned_cols=23  Identities=17%  Similarity=0.518  Sum_probs=18.6

Q ss_pred             CcccccccccccCChHHHHHHHH
Q psy8937          18 DARYCKICGKHYSNSSNLKQHIR   40 (147)
Q Consensus        18 ~~~~C~~C~~~f~~~~~l~~h~~   40 (147)
                      .-..|.+|+..|.+...-+.|..
T Consensus        20 ~nk~C~lCn~~Fns~~~AqsHY~   42 (55)
T d1zu1a2          20 RSKCCPVCNMTFSSPVVAESHYI   42 (55)
T ss_dssp             TTTEETTTTEECSSHHHHHHHHT
T ss_pred             chhhhhhhhcccCCHHHHHHHhh
Confidence            34579999999999888888864

>d2czra1 c.52.4.1 (A:1-218) TBP-interacting protein {Thermococcus kodakaraensis [TaxId: 311400]}

class: Alpha and beta proteins (a/b)
fold: Restriction endonuclease-like
superfamily: TBP-interacting protein-like
family: TBP-interacting protein-like
domain: TBP-interacting protein
species: Thermococcus kodakaraensis [TaxId: 311400]

Probab=84.69  E-value=0.11  Score=29.92  Aligned_cols=38  Identities=24%  Similarity=0.351  Sum_probs=26.9

Q ss_pred             hHHHHHHHHHHhC-C------CcccCCCchhccCChHHHHhHHHhh
Q psy8937         104 SSNLKQHIRLIHL-P------GILFCPLCQKCFKNKLYLRRHVISF  142 (147)
Q Consensus       104 ~~~l~~H~~~~~~-~------~~~~C~~C~~~f~~~~~l~~H~~~~  142 (147)
                      ...|..|+....- .      +-|+|..||+ +..-.+|.+||+.|
T Consensus       124 GgrlieHiK~~m~~GqDyvFWQFYKCe~CgK-YvDie~~~~H~k~H  168 (218)
T d2czra1         124 GAALVNHIKNNALAGQDYIFWQFYKCEECGK-YVDIENLEAHLREH  168 (218)
T ss_dssp             HHHHHHHHHTTCCBTTTEEEEEEEECTTTCC-EEEGGGHHHHHHTT
T ss_pred             hHHHHHHHHhccccCcceEEEEEeehhhcCc-eecHHHHHHHHHHc
Confidence            5677788775432 1      2388999997 45566889999985

>d1wjpa2 g.37.1.1 (A:43-66) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 295, ZNF295
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.36  E-value=0.38  Score=17.70  Aligned_cols=19  Identities=16%  Similarity=0.434  Sum_probs=11.8

Q ss_pred             cccccccccCChHHHHHHH
Q psy8937          21 YCKICGKHYSNSSNLKQHI   39 (147)
Q Consensus        21 ~C~~C~~~f~~~~~l~~h~   39 (147)
                      +|++|...|.+...-..|.
T Consensus         2 vcpycslrf~sp~lk~ehe   20 (26)
T d1wjpa2           2 VCPYCSLRFFSPELKQEHE   20 (26)
T ss_dssp             CCTTTCCCBSSHHHHHHHH
T ss_pred             CCCcceeeeCCHHHhhHhh
Confidence            5777777777655444443