Psyllid ID: psy9085

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390----
MAPRYELAVGLKKGHRNTKIKWANSLAQKTSKIVKMRPSRLKGNGSQLVNIFLILGCTIIFQNKTWIMENNIETLSATDEIFKYDRKRQQDMIAAKPWEKDPHFFKDIKISALALLKMVMHARSGGTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVNAQAQAYEYMTAYIEAAKEVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPVRTISAGKVCLGSFRTYPKGYKPANEEPSEYQTIPLNKIEDFGVHCKQYYSLDVSYFKSSLDRRLLDSLWNKYWVNTLSSSSLLTNADYLTGQMCDLSDKLEQAESALVRNFLISESQERRPETKLMKATKDCCKTTIECIHGLMAQMIKQQLFNHNMKHVETEDSVMA
cccccHHHHHccccccccEEEEcccHHHHHHHHHHccccccccccccEEEHHHccccccccccccccHHccccccccccccccccHHHHHHHHHccccccccccccEEEEcHHHHHHHHHHHHcccccEEEEEEEEEEEccEEEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHcccccEEEEEcccccccccccHHHHHHHHHHHHccccEEEEEEccccccccccEEEEEEEEcccccccccccccccccccccccccccccccEEEEEEHHHcccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccc
ccccEEEEEEccccccccEEEEcHHHHHHHHHHcccccccccccccccccHHHHccccHHHHHHHHHHHccccccccHHHHHHccHHHHHHHHHcccccccccccHEEEHHHHHHHHHHHHHcccccEEEEEHEcccccccEEEEEEEEEcccccccEEEccHHHHHHHHHHHHHHHHHcccccHEEEEEcccccccEEEcccEcccHHHHHHccccEEEEEEcccEEEEccEEEEEEEEEcccccccccccccccEEcccccccccccEEcEEEEEEEEEEccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccc
MAPRYELAVGLKKGHRNTKIKWANSLAQKTSKivkmrpsrlkgngsqLVNIFLILGCTIIFQNKTWIMENNIETLSATDEIFKYDRKRQQDMiaakpwekdphfFKDIKISALALLKMVMHARSGGTLEVMGLLLGKIDANSMIVMDafalpvegteTRVNAQAQAYEYMTAYIEAAKEVGRLENAIGwyhshpgygcwlsgIDVSTQMLNQnfqepfvaividpvrtisagkvclgsfrtypkgykpaneepseyqtiplnkiedfgvhckqyYSLDVSYFKSSLDRRLLDSLWNKYWVntlsssslltnadyltgqmcdlsDKLEQAESALVRNFLisesqerrpetkLMKATKDCCKTTIECIHGLMAQMIKQQLFNHnmkhvetedsvma
mapryelavglkkghrntkikwanslaqktskivkmrpsrlkgngsQLVNIFLILGCTIIFQNKTWIMENNIETLSATDEIFKYDRKRQQDMIaakpwekdphfFKDIKISALALLKMVMHARSGGTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVNAQAQAYEYMTAYIEAAKEVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPVRTISAGKVCLGSFRTYPKgykpaneepseyQTIPLNKIEDFGVHCKQYYSLDVSYFKSSLDRRLLDSLWNKYWVNTLSSSSLLTNADYLTGQMCDLSDKLEQAESALVRnflisesqerrpetklmkatKDCCKTTIECIHGLMAQMIKQQLFNHNMKHVetedsvma
MAPRYELAVGLKKGHRNTKIKWANSLAQKTSKIVKMRPSRLKGNGSQLVNIFLILGCTIIFQNKTWIMENNIETLSATDEIFKYDRKRQQDMIAAKPWEKDPHFFKDIKISALALLKMVMHARSGGTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVNAQAQAYEYMTAYIEAAKEVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPVRTISAGKVCLGSFRTYPKGYKPANEEPSEYQTIPLNKIEDFGVHCKQYYSLDVSYFKssldrrlldslWNKYWVNTlssssllTNADYLTGQMCDLSDKLEQAESALVRNFLISESQERRPETKLMKATKDCCKTTIECIHGLMAQMIKQQLFNHNMKHVETEDSVMA
*****************TKIKWANSL*****************NGSQLVNIFLILGCTIIFQNKTWIMENNIETLSATDEIFKYDRKRQQDMIAAKPWEKDPHFFKDIKISALALLKMVMHARSGGTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVNAQAQAYEYMTAYIEAAKEVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPVRTISAGKVCLGSFRTYPKGYK********YQTIPLNKIEDFGVHCKQYYSLDVSYFKSSLDRRLLDSLWNKYWVNTLSSSSLLTNADYLTGQMCDLSDKLEQAESALVRNFLI*************KATKDCCKTTIECIHGLMAQMIKQQLFNH*************
**PRYELAVGLKKGHRNT******************************************************ETLSATDEIF**********************FKDIKISALALLKMVMHARSGGTLEVMGLLLGKIDANSMIVMDAFALPVEGTET*VNAQAQAYEYMTAYIEAAKEVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPVRTISAGKVCLGSFRTYPKGY*****************IEDFGVHCKQYYSLDVSYFKSSLDRRLLDSLWNKYWVNTL**********Y***QMCD**************************************KTTIECIHGLMAQMIKQQLFN**************
MAPRYELAVGLKKGHRNTKIKWANSLAQKTSKIVKMRPSRLKGNGSQLVNIFLILGCTIIFQNKTWIMENNIETLSATDEIFKYDRKRQQDMIAAKPWEKDPHFFKDIKISALALLKMVMHARSGGTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVNAQAQAYEYMTAYIEAAKEVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPVRTISAGKVCLGSFRTYPKGYKPANEEPSEYQTIPLNKIEDFGVHCKQYYSLDVSYFKSSLDRRLLDSLWNKYWVNTLSSSSLLTNADYLTGQMCDLSDKLEQAESALVRNFLISESQERRPETKLMKATKDCCKTTIECIHGLMAQMIKQQLFNHNMKHVETEDSVMA
*APRYELAVGLKKGHRNTKIKWANSLAQKTSKIVKMRP*********LVNIFLILGCTIIFQNKTWIMENNIETLSATDEIFKYDRKRQQDMIAAKPWEKDPHFFKDIKISALALLKMVMHARSGGTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVNAQAQAYEYMTAYIEAAKEVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPVRTISAGKVCLGSFRTYPKGYKPANEEPSEYQTIPLNKIEDFGVHCKQYYSLDVSYFKSSLDRRLLDSLWNKYWVNTLSSSSLLTNADYLTGQMCDLSDKLEQAESALVR*********RRPETKLMKATKDCCKTTIECIHGLMAQMIKQQLFNH*************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAPRYELAVGLKKGHRNTKIKWANSLAQKTSKIVKMRPSRLKGNGSQLVNIFLILGCTIIFQNKTWIMENNIETLSATDEIFKYDRKRQQDMIAAKPWEKDPHFFKDIKISALALLKMVMHARSGGTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVNAQAQAYEYMTAYIEAAKEVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPVRTISAGKVCLGSFRTYPKGYKPANEEPSEYQTIPLNKIEDFGVHCKQYYSLDVSYFKSSLDRRLLDSLWNKYWVNTLSSSSLLTNADYLTGQMCDLSDKLEQAESALVRNFLISESQERRPETKLMKATKDCCKTTIECIHGLMAQMIKQQLFNHNMKHVETEDSVMA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query394 2.2.26 [Sep-21-2011]
Q9XZ58327 COP9 signalosome complex yes N/A 0.796 0.960 0.791 1e-155
O35864334 COP9 signalosome complex yes N/A 0.807 0.952 0.765 1e-141
Q92905334 COP9 signalosome complex yes N/A 0.807 0.952 0.765 1e-141
Q6P635334 COP9 signalosome complex yes N/A 0.807 0.952 0.759 1e-141
Q6GLM9332 COP9 signalosome complex N/A N/A 0.807 0.957 0.759 1e-141
Q6PC30334 COP9 signalosome complex yes N/A 0.807 0.952 0.759 1e-141
Q54PF3332 COP9 signalosome complex yes N/A 0.794 0.942 0.652 1e-128
Q9FVU9358 COP9 signalosome complex yes N/A 0.824 0.907 0.652 1e-123
Q8LAZ7357 COP9 signalosome complex no N/A 0.824 0.910 0.637 1e-121
P91001368 COP9 signalosome complex yes N/A 0.781 0.836 0.601 1e-112
>sp|Q9XZ58|CSN5_DROME COP9 signalosome complex subunit 5 OS=Drosophila melanogaster GN=CSN5 PE=1 SV=1 Back     alignment and function desciption
 Score =  547 bits (1410), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 251/317 (79%), Positives = 288/317 (90%), Gaps = 3/317 (0%)

Query: 64  KTWIMENNIETLSATDEIFKYDRKRQQDMIAAKPWEKDPHFFKDIKISALALLKMVMHAR 123
           KTW +ENNI+TL + DEIF+YD ++Q+ +I AKPWEKDPHFFKDIKISALALLKMVMHAR
Sbjct: 8   KTWELENNIQTLPSCDEIFRYDAEQQRQIIDAKPWEKDPHFFKDIKISALALLKMVMHAR 67

Query: 124 SGGTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVNAQAQAYEYMTAYIEAAKEVGRL 183
           SGGTLEVMGL+LGK++ N+MIVMDAFALPVEGTETRVNAQAQAYEYMTAY+EAAKEVGR+
Sbjct: 68  SGGTLEVMGLMLGKVEDNTMIVMDAFALPVEGTETRVNAQAQAYEYMTAYMEAAKEVGRM 127

Query: 184 ENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPVRTISAGKVCLGSFRTYP 243
           E+A+GWYHSHPGYGCWLSGIDVSTQMLNQ +QEPFVAIV+DPVRT+SAGKVCLG+FRTYP
Sbjct: 128 EHAVGWYHSHPGYGCWLSGIDVSTQMLNQTYQEPFVAIVVDPVRTVSAGKVCLGAFRTYP 187

Query: 244 KGYKPANEEPSEYQTIPLNKIEDFGVHCKQYYSLDVSYFKSSLDRRLLDSLWNKYWVNTL 303
           KGYKP NEEPSEYQTIPLNKIEDFGVHCKQYY L++SYFKS+LDRRLLDSLWNKYWVNTL
Sbjct: 188 KGYKPPNEEPSEYQTIPLNKIEDFGVHCKQYYPLEISYFKSALDRRLLDSLWNKYWVNTL 247

Query: 304 SSSSLLTNADYLTGQMCDLSDKLEQAESALVRNFLISESQERRPETKLMKATKDCCKTTI 363
            SS LLTN +Y TGQ+ DLS+KLEQ+E+ L R    ++  E+R E KL KAT+DC ++TI
Sbjct: 248 GSSGLLTNTEYTTGQIMDLSEKLEQSENFLGRG---TDVNEKRSEDKLSKATRDCSRSTI 304

Query: 364 ECIHGLMAQMIKQQLFN 380
           E IHGLMAQ++K +LFN
Sbjct: 305 ELIHGLMAQIVKDKLFN 321
Probable protease subunit of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of the SCF-type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF. In the complex, it probably acts as the catalytic center that mediates the cleavage of Nedd8 from cullins. It however has no metalloprotease activity by itself and requires the other subunits of the CSN complex. The CSN complex plays an essential role in oogenesis and embryogenesis and is required for proper photoreceptor R cell differentiation and promote lamina glial cell migration or axon targeting. It also promotes Ubl-dependent degradation of cyclin E (CycE) during early oogenesis. Also involved in regulation of axis formation by checkpoint-dependent, translational control of Gurken.
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 4EC: .EC: -EC: .EC: -
>sp|O35864|CSN5_MOUSE COP9 signalosome complex subunit 5 OS=Mus musculus GN=Cops5 PE=1 SV=3 Back     alignment and function description
>sp|Q92905|CSN5_HUMAN COP9 signalosome complex subunit 5 OS=Homo sapiens GN=COPS5 PE=1 SV=4 Back     alignment and function description
>sp|Q6P635|CSN5_XENTR COP9 signalosome complex subunit 5 OS=Xenopus tropicalis GN=cops5 PE=2 SV=1 Back     alignment and function description
>sp|Q6GLM9|CSN5_XENLA COP9 signalosome complex subunit 5 OS=Xenopus laevis GN=cops5 PE=2 SV=1 Back     alignment and function description
>sp|Q6PC30|CSN5_DANRE COP9 signalosome complex subunit 5 OS=Danio rerio GN=cops5 PE=2 SV=1 Back     alignment and function description
>sp|Q54PF3|CSN5_DICDI COP9 signalosome complex subunit 5 OS=Dictyostelium discoideum GN=csn5 PE=1 SV=1 Back     alignment and function description
>sp|Q9FVU9|CSN5A_ARATH COP9 signalosome complex subunit 5a OS=Arabidopsis thaliana GN=CSN5A PE=1 SV=1 Back     alignment and function description
>sp|Q8LAZ7|CSN5B_ARATH COP9 signalosome complex subunit 5b OS=Arabidopsis thaliana GN=CSN5B PE=1 SV=2 Back     alignment and function description
>sp|P91001|CSN5_CAEEL COP9 signalosome complex subunit 5 OS=Caenorhabditis elegans GN=csn-5 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query394
389609837348 COP9 complex homolog subunit 5 [Papilio 0.804 0.910 0.865 1e-166
307198064378 COP9 signalosome complex subunit 5 [Harp 0.857 0.894 0.813 1e-166
350403594344 PREDICTED: COP9 signalosome complex subu 0.807 0.924 0.859 1e-165
340722877344 PREDICTED: COP9 signalosome complex subu 0.807 0.924 0.859 1e-165
66554150344 PREDICTED: COP9 signalosome complex subu 0.807 0.924 0.859 1e-165
223890174348 JAB-MPN domain protein [Bombyx mori] gi| 0.804 0.910 0.853 1e-164
307165958346 COP9 signalosome complex subunit 5 [Camp 0.807 0.919 0.853 1e-164
383850228345 PREDICTED: COP9 signalosome complex subu 0.807 0.921 0.853 1e-164
340722879345 PREDICTED: COP9 signalosome complex subu 0.807 0.921 0.856 1e-163
332028446345 COP9 signalosome complex subunit 5 [Acro 0.807 0.921 0.85 1e-163
>gi|389609837|dbj|BAM18530.1| COP9 complex homolog subunit 5 [Papilio xuthus] Back     alignment and taxonomy information
 Score =  591 bits (1523), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 277/320 (86%), Positives = 300/320 (93%), Gaps = 3/320 (0%)

Query: 64  KTWIMENNIETLSATDEIFKYDRKRQQDMIAAKPWEKDPHFFKDIKISALALLKMVMHAR 123
           KTW+M NNIET+S+ DEI++YD+K+QQD++AAKPWEKDPHFFKDIKISALALLKMVMHAR
Sbjct: 15  KTWVMANNIETVSSVDEIYRYDKKQQQDILAAKPWEKDPHFFKDIKISALALLKMVMHAR 74

Query: 124 SGGTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVNAQAQAYEYMTAYIEAAKEVGRL 183
           SGGTLEVMGLLLGK+DAN+MIVMD+FALPVEGTETRVNAQAQAYEYMTAYIEAAK+VGR 
Sbjct: 75  SGGTLEVMGLLLGKVDANTMIVMDSFALPVEGTETRVNAQAQAYEYMTAYIEAAKQVGRH 134

Query: 184 ENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPVRTISAGKVCLGSFRTYP 243
           ENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPVRTISAGKVCLG+FRTYP
Sbjct: 135 ENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPVRTISAGKVCLGAFRTYP 194

Query: 244 KGYKPANEEPSEYQTIPLNKIEDFGVHCKQYYSLDVSYFKSSLDRRLLDSLWNKYWVNTL 303
           KGYKPANEEPSEYQTIPLNKIEDFGVHCKQYYSL+VSYFKSSLDRRLLDSLWNKYWVNTL
Sbjct: 195 KGYKPANEEPSEYQTIPLNKIEDFGVHCKQYYSLEVSYFKSSLDRRLLDSLWNKYWVNTL 254

Query: 304 SSSSLLTNADYLTGQMCDLSDKLEQAESALVRN-FLI--SESQERRPETKLMKATKDCCK 360
           SSSSL+TNADY TGQ+ DLSDKLEQ+E  L R  FL+  ++  E+R E KL KATKD CK
Sbjct: 255 SSSSLITNADYTTGQIFDLSDKLEQSEVCLSRGVFLVAGADPHEKRSEDKLSKATKDACK 314

Query: 361 TTIECIHGLMAQMIKQQLFN 380
           TTIE IHGLMAQMIK +LFN
Sbjct: 315 TTIEVIHGLMAQMIKDRLFN 334

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|307198064|gb|EFN79117.1| COP9 signalosome complex subunit 5 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|350403594|ref|XP_003486847.1| PREDICTED: COP9 signalosome complex subunit 5-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340722877|ref|XP_003399827.1| PREDICTED: COP9 signalosome complex subunit 5-like isoform 1 [Bombus terrestris] Back     alignment and taxonomy information
>gi|66554150|ref|XP_623836.1| PREDICTED: COP9 signalosome complex subunit 5 isoform 2 [Apis mellifera] gi|380022707|ref|XP_003695180.1| PREDICTED: COP9 signalosome complex subunit 5-like [Apis florea] Back     alignment and taxonomy information
>gi|223890174|ref|NP_001138802.1| JAB-MPN domain protein [Bombyx mori] gi|221579605|gb|ACM24339.1| JAB-MPN domain protein [Bombyx mori] Back     alignment and taxonomy information
>gi|307165958|gb|EFN60285.1| COP9 signalosome complex subunit 5 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|383850228|ref|XP_003700698.1| PREDICTED: COP9 signalosome complex subunit 5-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|340722879|ref|XP_003399828.1| PREDICTED: COP9 signalosome complex subunit 5-like isoform 2 [Bombus terrestris] Back     alignment and taxonomy information
>gi|332028446|gb|EGI68489.1| COP9 signalosome complex subunit 5 [Acromyrmex echinatior] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query394
FB|FBgn0027053327 CSN5 "COP9 complex homolog sub 0.796 0.960 0.744 5e-131
UNIPROTKB|F1MBP8334 COPS5 "Uncharacterized protein 0.804 0.949 0.721 7.8e-126
UNIPROTKB|Q5ZLC3338 COPS5 "Uncharacterized protein 0.804 0.937 0.721 9.9e-126
UNIPROTKB|E2QWE0334 COPS5 "Uncharacterized protein 0.804 0.949 0.721 9.9e-126
UNIPROTKB|Q92905334 COPS5 "COP9 signalosome comple 0.804 0.949 0.721 9.9e-126
UNIPROTKB|F2Z540334 COPS5 "Uncharacterized protein 0.804 0.949 0.721 9.9e-126
MGI|MGI:1349415334 Cops5 "COP9 (constitutive phot 0.804 0.949 0.721 9.9e-126
RGD|1310301334 Cops5 "COP9 signalosome subuni 0.804 0.949 0.721 9.9e-126
ZFIN|ZDB-GENE-040426-1686334 cops5 "COP9 constitutive photo 0.804 0.949 0.714 2.6e-125
DICTYBASE|DDB_G0284597332 csn5 "Mov34/MPN/PAD-1 family p 0.799 0.948 0.615 2.1e-109
FB|FBgn0027053 CSN5 "COP9 complex homolog subunit 5" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1285 (457.4 bits), Expect = 5.0e-131, P = 5.0e-131
 Identities = 236/317 (74%), Positives = 272/317 (85%)

Query:    64 KTWIMENNIETLSATDEIFKYDRKRQQDMIAAKPWEKDPHFFKDIKISALALLKMVMHAR 123
             KTW +ENNI+TL + DEIF+YD ++Q+ +I AKPWEKDPHFFKDIKISALALLKMVMHAR
Sbjct:     8 KTWELENNIQTLPSCDEIFRYDAEQQRQIIDAKPWEKDPHFFKDIKISALALLKMVMHAR 67

Query:   124 SGGTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVNAQAQAYEYMTAYIEAAKEVGRL 183
             SGGTLEVMGL+LGK++ N+MIVMDAFALPVEGTETRVNAQAQAYEYMTAY+EAAKEVGR+
Sbjct:    68 SGGTLEVMGLMLGKVEDNTMIVMDAFALPVEGTETRVNAQAQAYEYMTAYMEAAKEVGRM 127

Query:   184 ENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPVRTISAGKVCLGSFRTYP 243
             E+A+GWYHSHPGYGCWLSGIDVSTQMLNQ +QEPFVAIV+DPVRT+SAGKVCLG+FRTYP
Sbjct:   128 EHAVGWYHSHPGYGCWLSGIDVSTQMLNQTYQEPFVAIVVDPVRTVSAGKVCLGAFRTYP 187

Query:   244 KGYKPANEEPSEYQTIPLNKIEDFGVHCKQYYSLDVSYFKXXXXXXXXXXXWNKYWVNTX 303
             KGYKP NEEPSEYQTIPLNKIEDFGVHCKQYY L++SYFK           WNKYWVNT 
Sbjct:   188 KGYKPPNEEPSEYQTIPLNKIEDFGVHCKQYYPLEISYFKSALDRRLLDSLWNKYWVNTL 247

Query:   304 XXXXXXTNADYLTGQMCDLSDKLEQAESALVRNFLISESQERRPETKLMKATKDCCKTTI 363
                   TN +Y TGQ+ DLS+KLEQ+E+ L R    ++  E+R E KL KAT+DC ++TI
Sbjct:   248 GSSGLLTNTEYTTGQIMDLSEKLEQSENFLGRG---TDVNEKRSEDKLSKATRDCSRSTI 304

Query:   364 ECIHGLMAQMIKQQLFN 380
             E IHGLMAQ++K +LFN
Sbjct:   305 ELIHGLMAQIVKDKLFN 321
GO:0005515 "protein binding" evidence=IPI
GO:0008180 "signalosome" evidence=ISS;NAS;IMP;IDA;TAS
GO:0007275 "multicellular organismal development" evidence=IMP
GO:0008347 "glial cell migration" evidence=IMP
GO:0005737 "cytoplasm" evidence=IDA
GO:0001751 "compound eye photoreceptor cell differentiation" evidence=IMP;TAS
GO:0007409 "axonogenesis" evidence=IMP
GO:0007310 "oocyte dorsal/ventral axis specification" evidence=IMP
GO:0007314 "oocyte anterior/posterior axis specification" evidence=IMP
GO:0000338 "protein deneddylation" evidence=IMP
GO:0019781 "NEDD8 activating enzyme activity" evidence=IMP
GO:0048477 "oogenesis" evidence=TAS
GO:0050821 "protein stabilization" evidence=IMP
GO:0045787 "positive regulation of cell cycle" evidence=IMP
GO:0032435 "negative regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IMP
GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI
UNIPROTKB|F1MBP8 COPS5 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZLC3 COPS5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2QWE0 COPS5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q92905 COPS5 "COP9 signalosome complex subunit 5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z540 COPS5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1349415 Cops5 "COP9 (constitutive photomorphogenic) homolog, subunit 5 (Arabidopsis thaliana)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1310301 Cops5 "COP9 signalosome subunit 5" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1686 cops5 "COP9 constitutive photomorphogenic homolog subunit 5" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0284597 csn5 "Mov34/MPN/PAD-1 family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6PC30CSN5_DANRE3, ., 4, ., -, ., -0.75930.80710.9520yesN/A
Q9FVU9CSN5A_ARATH3, ., 4, ., -, ., -0.65260.82480.9078yesN/A
Q92905CSN5_HUMAN3, ., 4, ., -, ., -0.76560.80710.9520yesN/A
Q6C703CSN5_YARLI3, ., 4, ., -, ., -0.47530.79940.8898yesN/A
Q4IJM4CSN5_GIBZE3, ., 4, ., -, ., -0.48600.80450.9323yesN/A
P91001CSN5_CAEEL3, ., 4, ., -, ., -0.60120.78170.8369yesN/A
Q5BBF1CSN5_EMENI3, ., 4, ., -, ., -0.54230.79940.9402yesN/A
O35864CSN5_MOUSE3, ., 4, ., -, ., -0.76560.80710.9520yesN/A
Q4P804CSN5_USTMA3, ., 4, ., -, ., -0.50390.82740.8029N/AN/A
Q4WZP2CSN5_ASPFU3, ., 4, ., -, ., -0.53840.79180.9341yesN/A
Q54PF3CSN5_DICDI3, ., 4, ., -, ., -0.65200.79440.9427yesN/A
P0CQ24CSN5_CRYNJ3, ., 4, ., -, ., -0.45120.84010.8921yesN/A
O94454CSN5_SCHPO3, ., 4, ., -, ., -0.46910.60150.7926yesN/A
Q6P635CSN5_XENTR3, ., 4, ., -, ., -0.75930.80710.9520yesN/A
Q8LAZ7CSN5B_ARATH3, ., 4, ., -, ., -0.63770.82480.9103noN/A
Q6GLM9CSN5_XENLA3, ., 4, ., -, ., -0.75930.80710.9578N/AN/A
Q6BMQ3CSN5_DEBHA3, ., 4, ., -, ., -0.52140.63190.5309yesN/A
Q9XZ58CSN5_DROME3, ., 4, ., -, ., -0.79170.79690.9602yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.19LOW CONFIDENCE prediction!
3rd Layer3.4.17.n1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query394
cd08069268 cd08069, MPN_RPN11_CSN5, Mov34/MPN/PAD-1 family: p 1e-152
pfam01398117 pfam01398, JAB, JAB1/Mov34/MPN/PAD-1 ubiquitin pro 1e-39
smart00232135 smart00232, JAB_MPN, JAB/MPN domain 3e-37
cd08058119 cd08058, MPN_euk_mb, Mpr1p, Pad1p N-terminal (MPN) 1e-23
COG1310134 COG1310, COG1310, Predicted metal-dependent protea 7e-17
cd08068244 cd08068, MPN_BRCC36, Mov34/MPN/PAD-1 family: BRCC3 9e-14
cd08067187 cd08067, MPN_2A_DUB, Mov34/MPN/PAD-1 family: Histo 6e-12
cd08065266 cd08065, MPN_eIF3h, Mpr1p, Pad1p N-terminal (MPN) 1e-11
cd08057157 cd08057, MPN_euk_non_mb, Mpr1p, Pad1p N-terminal ( 2e-09
pfam1446498 pfam14464, Prok-JAB, Prokaryotic homologs of the J 3e-06
cd07767116 cd07767, MPN, Mpr1p, Pad1p N-terminal (MPN) domain 1e-05
cd08070128 cd08070, MPN_like, Mpr1p, Pad1p N-terminal (MPN) d 2e-04
pfam03665195 pfam03665, UPF0172, Uncharacterized protein family 0.002
cd08066173 cd08066, MPN_AMSH_like, Mov34/MPN/PAD-1 family 0.004
>gnl|CDD|163700 cd08069, MPN_RPN11_CSN5, Mov34/MPN/PAD-1 family: proteasomal regulatory protein Rpn11 and signalosome complex subunit CSN5 Back     alignment and domain information 
 Score =  429 bits (1105), Expect = e-152
 Identities = 158/271 (58%), Positives = 197/271 (72%), Gaps = 7/271 (2%)

Query: 97  PWEKDPHFFKDIKISALALLKMVMHARSGGTLEVMGLLLGKIDANSMIVMDAFALPVEGT 156
           PW+ DP +F+ + IS+LALLKM+ HAR+GG +EVMGL+LGK+D  ++IV+D FALPVEGT
Sbjct: 1   PWKPDPDYFEKVYISSLALLKMLKHARAGGPIEVMGLMLGKVDDYTIIVVDVFALPVEGT 60

Query: 157 ETRVNAQAQAYEYMTAYIEAAKEVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQE 216
           ETRVNAQ +  EYM  Y E  K+ GR EN +GWYHSHPGYGCWLSGIDV+TQ LNQ  Q+
Sbjct: 61  ETRVNAQDEFQEYMVQY-EMLKQTGRPENVVGWYHSHPGYGCWLSGIDVNTQQLNQQLQD 119

Query: 217 PFVAIVIDPVRTISAGKVCLGSFRTYPKGYKP--ANEEPSEYQTIPLNKIEDFGVHCKQY 274
           PFVA+V+DP+R++  GKV +G+FRT P GYKP    +  S    +P  KIEDFG H KQY
Sbjct: 120 PFVAVVVDPIRSLVKGKVVIGAFRTIPPGYKPLEPRQTTSNIGHLPKPKIEDFGGHNKQY 179

Query: 275 YSLDVSYFKSSLDRRLLDSLWNKYWVNTLSSSSLLTNA-DYLTGQMCDLSDKLEQAESAL 333
           YSL + YFKSSLDR+LL +LWNKYWVNTLS S LL N+ +Y   Q+ DL++KLE+AE   
Sbjct: 180 YSLPIEYFKSSLDRKLLLNLWNKYWVNTLSLSPLLENSNEYTIKQILDLAEKLEKAEQQE 239

Query: 334 VRNFLISESQERRPETKLMKATKDCCKTTIE 364
            R  L  E  +     KL KA +D  K  +E
Sbjct: 240 ER--LTGEELDIANVGKLDKA-RDSSKIHLE 267

This family contains proteasomal regulatory protein Rpn11 (26S proteasome regulatory subunit rpn11; PAD1; POH1; RPN11; PSMD14; Rpn11 subunit of the 19S-proteasome; regulatory particle number 11) and signalosomal CSN5 (COP9 signalosome complex subunit 5; COP9 complex homolog subunit 5; c-Jun activation domain-binding protein-1; CSN5/JAB1; JAB1). COP9 signalosome (CSN) and the proteasome lid are paralogous complexes and their respective subunits CSN5 and Rpn11 are most closely related between the two complexes, both containing the conserved JAMM (JAB1/MPN/Mov34 metalloenzyme) motif involved in zinc ion coordination and providing the active site for isopeptidase activity. Rpn11 is responsible for substrate deubiquitination during proteasomal degradation. It is essential for maintaining a correct cell cycle and normal mitochondrial morphology and physiology; mutations in Rpn11 cause cell cycle and mitochondrial defects, temperature sensitivity and sensitivity to DNA damaging reagents such as UV. It has been shown that the C-terminal region of Rpn11 is involved in the regulation of the mitochondrial fission and tubulation processes. CSN5, one of the eight subunits of CSN, is critical for nuclear export and the degradation of several tumor suppressor proteins, including p53, p27, and Smad4. Its MPN+ domain is critical for the physical interaction of RUNX3 and Jab1. It has been suggested that the direct interaction of CSN5/JAB1 with p27 provides p27 with a leucine-rich nuclear export signal (NES), which is required for binding to chromosomal region maintenance 1 (CRM1), and facilitates nuclear export. The over-expression of CSN5/JAB1 also has been implicated in cancer initiation and progression, including cancer of the lung, pancreas, mouth, thyroid, and breast, suggesting that the oncogenic activity of CSN5 is associated with the down-regulation of RUNX3. Length = 268
>gnl|CDD|216478 pfam01398, JAB, JAB1/Mov34/MPN/PAD-1 ubiquitin protease Back     alignment and domain information
>gnl|CDD|214573 smart00232, JAB_MPN, JAB/MPN domain Back     alignment and domain information
>gnl|CDD|163689 cd08058, MPN_euk_mb, Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding); eukaryotic Back     alignment and domain information
>gnl|CDD|224229 COG1310, COG1310, Predicted metal-dependent protease of the PAD1/JAB1 superfamily [General function prediction only] Back     alignment and domain information
>gnl|CDD|163699 cd08068, MPN_BRCC36, Mov34/MPN/PAD-1 family: BRCC36, a subunit of BRCA1-A complex Back     alignment and domain information
>gnl|CDD|163698 cd08067, MPN_2A_DUB, Mov34/MPN/PAD-1 family: Histone H2A deubiquitinase Back     alignment and domain information
>gnl|CDD|163696 cd08065, MPN_eIF3h, Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF2h Back     alignment and domain information
>gnl|CDD|163688 cd08057, MPN_euk_non_mb, Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity (non metal-binding); eukaryotic Back     alignment and domain information
>gnl|CDD|222766 pfam14464, Prok-JAB, Prokaryotic homologs of the JAB domain Back     alignment and domain information
>gnl|CDD|163686 cd07767, MPN, Mpr1p, Pad1p N-terminal (MPN) domains Back     alignment and domain information
>gnl|CDD|163701 cd08070, MPN_like, Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) Back     alignment and domain information
>gnl|CDD|217666 pfam03665, UPF0172, Uncharacterized protein family (UPF0172) Back     alignment and domain information
>gnl|CDD|163697 cd08066, MPN_AMSH_like, Mov34/MPN/PAD-1 family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 394
KOG1554|consensus347 100.0
cd08069268 MPN_RPN11_CSN5 Mov34/MPN/PAD-1 family: proteasomal 100.0
cd08065266 MPN_eIF3h Mpr1p, Pad1p N-terminal (MPN) domains wi 100.0
cd08064265 MPN_eIF3f Mpr1p, Pad1p N-terminal (MPN) domains wi 99.97
cd08067187 MPN_2A_DUB Mov34/MPN/PAD-1 family: Histone H2A deu 99.97
KOG1560|consensus339 99.95
cd08062280 MPN_RPN7_8 Mpr1p, Pad1p N-terminal (MPN) domains w 99.95
KOG1555|consensus316 99.95
cd08068244 MPN_BRCC36 Mov34/MPN/PAD-1 family: BRCC36, a subun 99.95
cd08058119 MPN_euk_mb Mpr1p, Pad1p N-terminal (MPN) domains w 99.95
smart00232135 JAB_MPN JAB/MPN domain. Domain in Jun kinase activ 99.94
cd08057157 MPN_euk_non_mb Mpr1p, Pad1p N-terminal (MPN) domai 99.93
PF01398114 JAB: JAB1/Mov34/MPN/PAD-1 ubiquitin protease; Inte 99.93
KOG2975|consensus288 99.92
cd08066173 MPN_AMSH_like Mov34/MPN/PAD-1 family. AMSH (associ 99.91
PLN03246303 26S proteasome regulatory subunit; Provisional 99.91
cd08063288 MPN_CSN6 Mpr1p, Pad1p N-terminal (MPN) domains wit 99.9
cd07767116 MPN Mpr1p, Pad1p N-terminal (MPN) domains. MPN (al 99.87
cd08070128 MPN_like Mpr1p, Pad1p N-terminal (MPN) domains wit 99.8
KOG1556|consensus309 99.72
COG1310134 Predicted metal-dependent protease of the PAD1/JAB 99.6
cd08072117 MPN_archaeal Mov34/MPN/PAD-1 family: archaeal JAB1 99.6
cd08073108 MPN_NLPC_P60 Mpr1p, Pad1p N-terminal (MPN) domains 99.47
cd08060182 MPN_UPF0172 Mov34/MPN/PAD-1 family: UPF0172 family 99.38
PF14464104 Prok-JAB: Prokaryotic homologs of the JAB domain; 99.33
KOG2880|consensus424 99.28
cd08056252 MPN_PRP8 Mpr1p, Pad1p N-terminal (MPN) domains wit 99.06
PTZ0019698 60S ribosomal protein L36; Provisional 99.03
cd08059101 MPN_prok_mb Mpr1p, Pad1p N-terminal (MPN) domains 98.99
TIGR03735192 PRTRC_A PRTRC system protein A. A novel genetic sy 98.99
TIGR02256131 ICE_VC0181 integrative and conjugative element pro 98.99
PF0115898 Ribosomal_L36e: Ribosomal protein L36e; InterPro: 98.89
KOG3452|consensus102 98.87
PF03665196 UPF0172: Uncharacterised protein family (UPF0172); 98.77
KOG3050|consensus299 98.48
cd08061274 MPN_NPL4 Mov34/MPN/PAD-1 family: nuclear protein l 98.2
KOG3289|consensus199 98.13
COG505197 RPL36A Ribosomal protein L36E [Translation, riboso 97.59
PF05021306 NPL4: NPL4 family; InterPro: IPR007717 The HRD4 ge 97.28
KOG2834|consensus510 90.04
KOG1795|consensus2321 84.1
cd08071113 MPN_DUF2466 Mov34/MPN/PAD-1 family. Mov34 DUF2466 83.96
>KOG1554|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.3e-97  Score=707.95  Aligned_cols=323  Identities=70%  Similarity=1.167  Sum_probs=310.8

Q ss_pred             ccchhhhhhhhhccCccccccccccccCCHHHHHHHHhcCCCCCCCCCeeEEEECHHHHHHHHHHHhcCCCceEEEEEee
Q psy9085          57 CTIIFQNKTWIMENNIETLSATDEIFKYDRKRQQDMIAAKPWEKDPHFFKDIKISALALLKMVMHARSGGTLEVMGLLLG  136 (394)
Q Consensus        57 ~~~~~~~~~~~~~n~~~~~~~~d~~~~~d~~~~~~~~~~~pw~~dp~~~~~V~Is~~aLlkIl~Hars~~p~EVmGlLLG  136 (394)
                      +.+.+|+++||++||++.++..|+||+||.+.|.++..++||..||+||+.|+||+++|+||++||++|++.||||+|+|
T Consensus         4 ~~s~~~~k~we~en~~~~~~~~deif~yd~~sq~~~~~~kpw~~Dp~~fk~vkISalAllKm~~hA~~GgnlEiMGlm~G   83 (347)
T KOG1554|consen    4 SSSYTAQKTWELENNIQSVESEDEIFRYDQKSQRKIILEKPWSTDPHYFKHVKISALALLKMVMHARSGGNLEIMGLMQG   83 (347)
T ss_pred             ccccchhHHHHHhhhhccCccchhhhhcCHHHHHHHHhcCcccCCCchhhhhhhHHHHHHHHHHHHhcCCCeEEEeeecc
Confidence            44668999999999999998899999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCeEEEEEEEecCccCCCCcccccccHHHHHHHHHHHHHHhCCCCceEEEEecCCCCCCcccHhhHHhHHhhhccCC
Q psy9085         137 KIDANSMIVMDAFALPVEGTETRVNAQAQAYEYMTAYIEAAKEVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQE  216 (394)
Q Consensus       137 ~~d~~tl~Vtd~F~lP~~~te~rv~a~~ea~ey~~~mle~~~kvgr~e~iVGWYHSHP~~~~~pS~iDV~tQ~~yQ~~~~  216 (394)
                      ++++++++|+|||+||++|||+|||++.+++|||.+|.+.++.+||.+++||||||||+|+||+|+|||.||.++|++++
T Consensus        84 kv~g~t~IvmD~FaLPVeGTETRVNAq~~AyEYmv~Y~e~~k~~gr~envVGWyHSHPgYgCWLSgIDVsTQ~lNQ~fQe  163 (347)
T KOG1554|consen   84 KVDGDTIIVMDSFALPVEGTETRVNAQAEAYEYMVQYIEEAKNVGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQRFQE  163 (347)
T ss_pred             cccCCeEEEEeccccccccccceechHHHHHHHHHHHHHHHHHhhhhhceeeeeecCCCCCccccCcchhHHHHhhhhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEEcCCCCCCCCceEEEEEEEccCCCCCCCCCCCcccccccchhccccccceeEEeeeeEEecCHHHHHHHHhhhh
Q psy9085         217 PFVAIVIDPVRTISAGKVCLGSFRTYPKGYKPANEEPSEYQTIPLNKIEDFGVHCKQYYSLDVSYFKSSLDRRLLDSLWN  296 (394)
Q Consensus       217 p~VaLVvDp~~t~~~Gkv~i~AFR~~p~~~~~~~~~~~e~~~iPl~ki~d~g~~~~~yy~L~V~~~~S~ld~~~L~~L~~  296 (394)
                      ||||+||||.||.++|++.|+|||++|.||+||++.|++||+||++||+|||+||.+||+|+|+||+|.+|.++|+.||+
T Consensus       164 PfvAvViDP~Rtlsagkv~iGAFRTyp~gyk~~d~~~seyqtipl~kied~gvHck~yysl~isyfks~ld~kll~~Lwn  243 (347)
T KOG1554|consen  164 PFVAVVIDPTRTLSAGKVNIGAFRTYPKGYKPPDEPPSEYQTIPLNKIEDFGVHCKQYYSLEISYFKSSLDMKLLELLWN  243 (347)
T ss_pred             CeEEEEecCccccccCceeeceeecccCCCCCCCCCchhhhccchhhhhhcccceEEeeccchhhhhhhhhHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhccccccccHHHHHHHHHHHHHHHHHHHHhhcccccccccccCc--chhhHHHHhhhhhHHHHHHHhhhHHHHH
Q psy9085         297 KYWVNTLSSSSLLTNADYLTGQMCDLSDKLEQAESALVRNFLISESQERR--PETKLMKATKDCCKTTIECIHGLMAQMI  374 (394)
Q Consensus       297 ~~w~~~Ls~s~l~~n~~~~~~~i~dl~~k~~~~~~~~~~~~~~~~~~~~~--~~~~~~k~~~~~~~~~~e~~~g~~~~~~  374 (394)
                      +||++||+++|+++|.+|+++|+.||++||.+.+++++++.   ..++++  ++.+|+|+++|+++...|++||+|+|++
T Consensus       244 kywv~Tlsss~ll~N~dy~~~qi~d~~ekl~q~~~~l~~s~---~~~d~~~ed~~~l~k~~~Ds~~~~~e~~~gl~s~vv  320 (347)
T KOG1554|consen  244 KYWVRTLSSSPLLKNIDYLNGQIRDLSEKLEQREDSLETSD---NTHDRKSEDENLLAKATRDSSKCTNELIHGLMSQVV  320 (347)
T ss_pred             hhhhcccccccccccchhhcchhhhHHHHHHhhhhhcccCc---ccccccccchhhhhhhhhhhhhhhhcchhHHHHHHH
Confidence            99999999999999999999999999999999999998862   233333  3455999999999999999999999999


Q ss_pred             HHHHcCCC
Q psy9085         375 KQQLFNHN  382 (394)
Q Consensus       375 k~~~f~~~  382 (394)
                      |+.|||..
T Consensus       321 kd~lf~~~  328 (347)
T KOG1554|consen  321 KDKLFNDN  328 (347)
T ss_pred             HHHHHHhh
Confidence            99999964

>cd08069 MPN_RPN11_CSN5 Mov34/MPN/PAD-1 family: proteasomal regulatory protein Rpn11 and signalosome complex subunit CSN5 Back     alignment and domain information
>cd08065 MPN_eIF3h Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF2h Back     alignment and domain information
>cd08064 MPN_eIF3f Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF3f Back     alignment and domain information
>cd08067 MPN_2A_DUB Mov34/MPN/PAD-1 family: Histone H2A deubiquitinase Back     alignment and domain information
>KOG1560|consensus Back     alignment and domain information
>cd08062 MPN_RPN7_8 Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in 19S proteasomal subunits Rpn7 and Rpn8 Back     alignment and domain information
>KOG1555|consensus Back     alignment and domain information
>cd08068 MPN_BRCC36 Mov34/MPN/PAD-1 family: BRCC36, a subunit of BRCA1-A complex Back     alignment and domain information
>cd08058 MPN_euk_mb Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding); eukaryotic Back     alignment and domain information
>smart00232 JAB_MPN JAB/MPN domain Back     alignment and domain information
>cd08057 MPN_euk_non_mb Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity (non metal-binding); eukaryotic Back     alignment and domain information
>PF01398 JAB: JAB1/Mov34/MPN/PAD-1 ubiquitin protease; InterPro: IPR000555 Members of this family are found in proteasome regulatory subunits, eukaryotic initiation factor 3 (eIF3) subunits and regulators of transcription factors Back     alignment and domain information
>KOG2975|consensus Back     alignment and domain information
>cd08066 MPN_AMSH_like Mov34/MPN/PAD-1 family Back     alignment and domain information
>PLN03246 26S proteasome regulatory subunit; Provisional Back     alignment and domain information
>cd08063 MPN_CSN6 Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in COP9 signalosome complex subunit 6 Back     alignment and domain information
>cd07767 MPN Mpr1p, Pad1p N-terminal (MPN) domains Back     alignment and domain information
>cd08070 MPN_like Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) Back     alignment and domain information
>KOG1556|consensus Back     alignment and domain information
>COG1310 Predicted metal-dependent protease of the PAD1/JAB1 superfamily [General function prediction only] Back     alignment and domain information
>cd08072 MPN_archaeal Mov34/MPN/PAD-1 family: archaeal JAB1/MPN/Mov34 metalloenzyme Back     alignment and domain information
>cd08073 MPN_NLPC_P60 Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) found in proteins also containing NlpC/P60 domains Back     alignment and domain information
>cd08060 MPN_UPF0172 Mov34/MPN/PAD-1 family: UPF0172 family of unknown function includes neighbor of COX4 (Noc4p) Back     alignment and domain information
>PF14464 Prok-JAB: Prokaryotic homologs of the JAB domain; PDB: 1OI0_A 1R5X_B 2KKS_A 2KCQ_A Back     alignment and domain information
>KOG2880|consensus Back     alignment and domain information
>cd08056 MPN_PRP8 Mpr1p, Pad1p N-terminal (MPN) domains without isopeptidase activity found in splicing factor Prp8 Back     alignment and domain information
>PTZ00196 60S ribosomal protein L36; Provisional Back     alignment and domain information
>cd08059 MPN_prok_mb Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding); prokaryotic Back     alignment and domain information
>TIGR03735 PRTRC_A PRTRC system protein A Back     alignment and domain information
>TIGR02256 ICE_VC0181 integrative and conjugative element protein, VC0181 family Back     alignment and domain information
>PF01158 Ribosomal_L36e: Ribosomal protein L36e; InterPro: IPR000509 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>KOG3452|consensus Back     alignment and domain information
>PF03665 UPF0172: Uncharacterised protein family (UPF0172); InterPro: IPR005366 This is a small family of proteins of unknown function Back     alignment and domain information
>KOG3050|consensus Back     alignment and domain information
>cd08061 MPN_NPL4 Mov34/MPN/PAD-1 family: nuclear protein localization-4 (Npl4) domain Back     alignment and domain information
>KOG3289|consensus Back     alignment and domain information
>COG5051 RPL36A Ribosomal protein L36E [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF05021 NPL4: NPL4 family; InterPro: IPR007717 The HRD4 gene is identical to NPL4, a gene previously implicated in nuclear transport Back     alignment and domain information
>KOG2834|consensus Back     alignment and domain information
>KOG1795|consensus Back     alignment and domain information
>cd08071 MPN_DUF2466 Mov34/MPN/PAD-1 family Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query394
4f7o_A257 Crystal Structure Of Csn5 Length = 257 1e-101
4b4t_V306 Near-Atomic Resolution Structural Model Of The Yeas 5e-31
4b4t_U338 Near-Atomic Resolution Structural Model Of The Yeas 4e-06
2o95_A187 Crystal Structure Of The Metal-Free Dimeric Human M 3e-04
2o96_A178 Crystal Structure Of The Metal-Free Dimeric Human M 3e-04
2znr_A178 Crystal Structure Of The Dub Domain Of Human Amsh-L 5e-04
>pdb|4F7O|A Chain A, Crystal Structure Of Csn5 Length = 257 Back     alignment and structure 
Iteration: 1

 Score =  365 bits (937), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 178/239 (74%), Positives = 198/239 (82%)
Query: 64  KTWIMENNIETLSATDEIFKYDRKRQQDMIAAKPWEKDPHFFKDIKISALALLKMVMHAR 123
           KTW + NN +   + DEI+KYD+K+QQ+++AAKPW KD H+FK  KISALALLK V HAR
Sbjct: 11  KTWELANNXQEAQSIDEIYKYDKKQQQEILAAKPWTKDHHYFKYCKISALALLKXVXHAR 70
Query: 124 SGGTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVNAQAQAYEYMTAYIEAAKEVGRL 183
           SGG LEV GL LGK+D  + I+ D+FALPVEGTETRVNAQA AYEY  AYIE AK+VGRL
Sbjct: 71  SGGNLEVXGLXLGKVDGETXIIXDSFALPVEGTETRVNAQAAAYEYXAAYIENAKQVGRL 130
Query: 184 ENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPVRTISAGKVCLGSFRTYP 243
           ENAIGWYHSHPGYGCWLSGIDVSTQ LNQ FQEPFVA+VIDP RTISAGKV LG+FRTYP
Sbjct: 131 ENAIGWYHSHPGYGCWLSGIDVSTQXLNQQFQEPFVAVVIDPTRTISAGKVNLGAFRTYP 190
Query: 244 KGYKPANEEPSEYQTIPLNKIEDFGVHCKQYYSLDVSYFKXXXXXXXXXXXWNKYWVNT 302
           KGYKP +E PSEYQTIPLNKIEDFGVHCKQYY+L+VSYFK           WNKYWVNT
Sbjct: 191 KGYKPPDEGPSEYQTIPLNKIEDFGVHCKQYYALEVSYFKSSLDRKLLELLWNKYWVNT 249
>pdb|4B4T|V Chain V, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 306 Back     alignment and structure
>pdb|4B4T|U Chain U, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 338 Back     alignment and structure
>pdb|2O95|A Chain A, Crystal Structure Of The Metal-Free Dimeric Human Mov34 Mpn Domain (Residues 1-186) Length = 187 Back     alignment and structure
>pdb|2O96|A Chain A, Crystal Structure Of The Metal-Free Dimeric Human Mov34 Mpn Domain (Residues 1-177) Length = 178 Back     alignment and structure
>pdb|2ZNR|A Chain A, Crystal Structure Of The Dub Domain Of Human Amsh-Lp Length = 178 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query394
3rzv_A211 STAM-binding protein; ubiquitin hydrolase, endosom 2e-53
2znr_A178 AMSH-like protease; metal binding protein, alterna 2e-44
2o95_A187 26S proteasome non-ATPase regulatory subunit 7; PS 3e-38
2kks_A146 Uncharacterized protein; NESG, structural genomics 4e-30
4e0q_A141 COP9 signalosome complex subunit 6; MPN (MPR1P and 2e-27
2kcq_A153 MOV34/MPN/PAD-1 family; NESG, structure, structura 3e-26
3izc_K199 60S ribosomal protein RPL16 (L13P); eukaryotic rib 3e-06
1oi0_A124 AF2198, hypothetical protein AF2198; proteasome, d 1e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
3iz5_K206 60S ribosomal protein L13A (L13P); eukaryotic ribo 2e-04
2og4_A254 PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN 4e-04
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A Length = 211 Back     alignment and structure
 Score =  175 bits (444), Expect = 2e-53
 Identities = 29/190 (15%), Positives = 60/190 (31%), Gaps = 26/190 (13%)

Query: 83  KYDRKRQQDMIAAKPWEKDPHFFKDIKISALALLKMVMHARSG--GTLEVMGLLLGKIDA 140
             DR  +   ++           + + +      + +  A +     +   G+L GK+  
Sbjct: 19  VVDRSLKPGALSNSESIPTIDGLRHVVVPGRLCPQFLQLASANTARGVATCGILCGKLMR 78

Query: 141 NSMIVMDAFALPVEGTETRVNAQAQAYEYMTAYIEAAKEVGRLENAIGWYHSHPGYGCWL 200
           N   +               N + +   ++        +  +    +GW H+HP    +L
Sbjct: 79  NEFTITHVLIPKQSAGSDYCNTENEEELFL-------IQDQQGLITLGWIHTHPTQTAFL 131

Query: 201 SGIDVSTQMLNQNFQEPFVAIVIDPVRTISAGKVCLGSFRTYPKGYK-----------PA 249
           S +D+ T    Q      VAIV  P           G F+    G +           P 
Sbjct: 132 SSVDLHTHCSYQMMLPESVAIVCSPKFQE------TGFFKLTDHGLEEISSCRQKGFHPH 185

Query: 250 NEEPSEYQTI 259
           +++P  + + 
Sbjct: 186 SKDPPLFCSC 195
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A Length = 178 Back     alignment and structure
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A Length = 187 Back     alignment and structure
>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; NMR {Desulfitobacterium hafniense} Length = 146 Back     alignment and structure
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster} Length = 141 Back     alignment and structure
>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855} Length = 153 Back     alignment and structure
>1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination, archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} SCOP: c.97.3.1 PDB: 1r5x_A Length = 124 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2og4_A PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN domain, protein-PR interaction, PRP8P, pseudoenzyme, spliceosome activation; 2.00A {Saccharomyces cerevisiae} Length = 254 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query394
4b4t_V306 26S proteasome regulatory subunit RPN11; hydrolase 100.0
2o95_A187 26S proteasome non-ATPase regulatory subunit 7; PS 99.98
4e0q_A141 COP9 signalosome complex subunit 6; MPN (MPR1P and 99.95
2znr_A178 AMSH-like protease; metal binding protein, alterna 99.94
3rzv_A211 STAM-binding protein; ubiquitin hydrolase, endosom 99.93
4b4t_U338 RPN8, 26S proteasome regulatory subunit RPN8; hydr 99.92
2kcq_A153 MOV34/MPN/PAD-1 family; NESG, structure, structura 99.89
2kks_A146 Uncharacterized protein; NESG, structural genomics 99.89
1oi0_A124 AF2198, hypothetical protein AF2198; proteasome, d 99.75
3izc_k100 60S ribosomal protein RPL36 (L36E); eukaryotic rib 99.25
3iz5_k112 60S ribosomal protein L36 (L36E); eukaryotic ribos 99.24
2og4_A254 PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN 99.11
2p8r_A273 PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, t 99.01
4a18_Q104 RPL36, 60S ribosomal protein L36; ribosome, eukary 98.98
3sbg_A565 PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, 98.24
2qlc_A126 DNA repair protein RADC homolog; MCSG, structural 86.33
>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=100.00  E-value=7.7e-54  Score=421.27  Aligned_cols=242  Identities=33%  Similarity=0.560  Sum_probs=181.7

Q ss_pred             HHHHHhcCCCCCCC---CCeeEEEECHHHHHHHHHHHhcCCCceEEEEEeeEE-cCCeEEEEEEEecCccCCCCcccccc
Q psy9085          89 QQDMIAAKPWEKDP---HFFKDIKISALALLKMVMHARSGGTLEVMGLLLGKI-DANSMIVMDAFALPVEGTETRVNAQA  164 (394)
Q Consensus        89 ~~~~~~~~pw~~dp---~~~~~V~Is~~aLlkIl~Hars~~p~EVmGlLLG~~-d~~tl~Vtd~F~lP~~~te~rv~a~~  164 (394)
                      |+-+...++|..||   +++++|+|+++||+||++||+++.|.||||+|+|.. ++++++|+||||+|++++++++++.+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~V~is~lallkm~~Ha~~~~~~eV~GlLlG~~~~~~~v~Vt~~f~~P~~~~~~~v~~~d   84 (306)
T 4b4t_V            5 QRLMMNSKVGSADTGRDDTKETVYISSIALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVNVVDVFAMPQSGTGVSVEAVD   84 (306)
T ss_dssp             ------------CCCCCSSCCEEEECHHHHHHHHHHTCSCSSSCCEEEEEEEEETTTEEEEEEEECCCCEESSSCEECCC
T ss_pred             HHhhhccCCCCCCCCCCCCCCEEEEeHHHHHHHHHHhcCCCCceEEEEEeeEEcCCeEEEEEEEEeCCcCCCCCchhcCC
Confidence            34456677777766   579999999999999999999999999999999984 66789999999999999999988654


Q ss_pred             cHHHHHHHHHHHHHHhCCCCceEEEEecCCCCCCcccHhhHHhHHhhhccCCCeEEEEEcCCCCCCCCceEEEEEEEccC
Q psy9085         165 QAYEYMTAYIEAAKEVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPVRTISAGKVCLGSFRTYPK  244 (394)
Q Consensus       165 ea~ey~~~mle~~~kvgr~e~iVGWYHSHP~~~~~pS~iDV~tQ~~yQ~~~~p~VaLVvDp~~t~~~Gkv~i~AFR~~p~  244 (394)
                        .+|+.+|+++++++|+++++||||||||+++||||++||+||..||.+.+++|+|||||.++. +|++.|+|||++|.
T Consensus        85 --~~y~~~m~~~~~~v~~~~~vVGWYhShP~~~~~~S~~Di~tq~~yQ~~~~~~V~lV~Dp~~t~-~G~~~i~Afr~~~~  161 (306)
T 4b4t_V           85 --DVFQAKMMDMLKQTGRDQMVVGWYHSHPGFGCWLSSVDVNTQKSFEQLNSRAVAVVVDPIQSV-KGKVVIDAFRLIDT  161 (306)
T ss_dssp             --HHHHHHHHHHHHHHSCCCCCSEEEEECCSSSCCCCHHHHHHHHHHHHHCSSCEEEEECSSSSS-SCSSCEEEEECCHH
T ss_pred             --HHHHHHHHHHHHHhCCCcceeeEEecCCCCCCcCCHHHHHHHHHHHhcCCCcEEEEECCCcCC-CCceeeeEEEecCc
Confidence              468999999999999999999999999999999999999999999999999999999999986 79999999999997


Q ss_pred             CCCCCCCCC----Ccccccccchhcccccc-ceeEEeeeeEEecCHHHHHHHHhhhhhhhhhhhccccccccHHHHHHHH
Q psy9085         245 GYKPANEEP----SEYQTIPLNKIEDFGVH-CKQYYSLDVSYFKSSLDRRLLDSLWNKYWVNTLSSSSLLTNADYLTGQM  319 (394)
Q Consensus       245 ~~~~~~~~~----~e~~~iPl~ki~d~g~~-~~~yy~L~V~~~~S~ld~~~L~~L~~~~w~~~Ls~s~l~~n~~~~~~~i  319 (394)
                      ++.+..++|    +.++.+|..++++++.+ +++||+|+|+|++|++|+.+|+.||++||..+|+.+++..+.++..+++
T Consensus       162 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~yy~l~i~~~ks~le~~~L~~L~~~~w~~~l~~~~~~~~~~~~~~~i  241 (306)
T 4b4t_V          162 GALINNLEPRQTTSNTGLLNKANIQALIHGLNRHYYSLNIDYHKTAKETKMLMNLHKEQWQSGLKMYDYEEKEESNLAAT  241 (306)
T ss_dssp             HHHHCCCCCSCC----------------------CEEECSCCCCCSSCTHHHHHHHHC----------CHHHHHHHHHHH
T ss_pred             cccccccCcccccccccccCchhhhhhhccccceEEEeeeEEEeCcHHHHHHHHHHhcccccccccCcHHHHHHHHHHHH
Confidence            765544433    34556777788888765 4679999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q psy9085         320 CDLSDKLEQAESAL  333 (394)
Q Consensus       320 ~dl~~k~~~~~~~~  333 (394)
                      .++.+..++..+.+
T Consensus       242 ~~m~~~~~~y~k~v  255 (306)
T 4b4t_V          242 KSMVKIAEQYSKRI  255 (306)
T ss_dssp             HHHSSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            98877776665554
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A Back     alignment and structure
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster} Back     alignment and structure
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A Back     alignment and structure
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A Back     alignment and structure
>4b4t_U RPN8, 26S proteasome regulatory subunit RPN8; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855} Back     alignment and structure
>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; NMR {Desulfitobacterium hafniense} Back     alignment and structure
>1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination, archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} SCOP: c.97.3.1 PDB: 1r5x_A Back     alignment and structure
>2og4_A PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN domain, protein-PR interaction, PRP8P, pseudoenzyme, spliceosome activation; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2p8r_A PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, translation; 2.10A {Caenorhabditis elegans} PDB: 2p87_A Back     alignment and structure
>4a18_Q RPL36, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_Q 4a1b_Q 4a1d_Q Back     alignment and structure
>3sbg_A PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, JAB1/MPN domain; 3.28A {Saccharomyces cerevisiae} Back     alignment and structure
>2qlc_A DNA repair protein RADC homolog; MCSG, structural genomics, PSI-2, structure initiative; HET: DNA; 2.30A {Chlorobium tepidum tls} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 394
d1oi0a_121 c.97.3.1 (A:) Hypothetical protein AF2198 {Archaeo 6e-12
>d1oi0a_ c.97.3.1 (A:) Hypothetical protein AF2198 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 121 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: JAB1/MPN domain
family: JAB1/MPN domain
domain: Hypothetical protein AF2198
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 60.0 bits (145), Expect = 6e-12
 Identities = 22/101 (21%), Positives = 31/101 (30%), Gaps = 17/101 (16%)

Query: 108 IKISALALLKMVMHARSGGTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVNAQAQAY 167
           +KIS   L  ++  A+S    E + LL G  D    ++ +   LP               
Sbjct: 4   MKISRGLLKTILEAAKSAHPDEFIALLSGSKD----VMDELIFLPFVSGSVSAVIHLDML 59

Query: 168 EYMTAYIEAAKEVGRLENAIGWYHSHPGYGCWLSGIDVSTQ 208
                               G  HSHP   C  S  D+S  
Sbjct: 60  PIG-------------MKVFGTVHSHPSPSCRPSEEDLSLF 87

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query394
d1oi0a_121 Hypothetical protein AF2198 {Archaeon Archaeoglobu 99.69
>d1oi0a_ c.97.3.1 (A:) Hypothetical protein AF2198 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: JAB1/MPN domain
family: JAB1/MPN domain
domain: Hypothetical protein AF2198
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.69  E-value=2.2e-17  Score=139.72  Aligned_cols=108  Identities=21%  Similarity=0.180  Sum_probs=79.6

Q ss_pred             EEEECHHHHHHHHHHHhcCCCceEEEEEeeEEcCCeEEEEEEEecCccCCCCcccccccHHHHHHHHHHHHHHhCCCCce
Q psy9085         107 DIKISALALLKMVMHARSGGTLEVMGLLLGKIDANSMIVMDAFALPVEGTETRVNAQAQAYEYMTAYIEAAKEVGRLENA  186 (394)
Q Consensus       107 ~V~Is~~aLlkIl~Hars~~p~EVmGlLLG~~d~~tl~Vtd~F~lP~~~te~rv~a~~ea~ey~~~mle~~~kvgr~e~i  186 (394)
                      +++|+..++..|+.||++..|.|+||+|+|..+    .|+.++++|+...... +.      +..++    .+  +++++
T Consensus         3 ~l~I~~~~l~~i~~hA~~~~P~E~cGlL~G~~~----~i~~~~~~~n~~~~~~-~~------~~~~~----~~--~~~~i   65 (121)
T d1oi0a_           3 SMKISRGLLKTILEAAKSAHPDEFIALLSGSKD----VMDELIFLPFVSGSVS-AV------IHLDM----LP--IGMKV   65 (121)
T ss_dssp             SCEECHHHHHHHHHHHHHHTTSCCEEEEEESTT----EECEEEECCCCC--------------------------CCCEE
T ss_pred             eEEECHHHHHHHHHHHHhcCCceeEEEEEecCC----cEEEEEEcCCCCCCcc-cc------cccch----hh--cCCeE
Confidence            578999999999999999999999999999642    5778898898643321 11      11111    12  57899


Q ss_pred             EEEEecCCCCCCcccHhhHHhHHhhhccCCCeEEEEEcCCCCCCCCceEEEEEE
Q psy9085         187 IGWYHSHPGYGCWLSGIDVSTQMLNQNFQEPFVAIVIDPVRTISAGKVCLGSFR  240 (394)
Q Consensus       187 VGWYHSHP~~~~~pS~iDV~tQ~~yQ~~~~p~VaLVvDp~~t~~~Gkv~i~AFR  240 (394)
                      ||||||||+.+++||..|+.++.     ..+.+++|+++-.    +.-.++||+
T Consensus        66 vgi~HSHP~~~a~PS~~D~~~~~-----~~g~~~~Ivs~p~----~~~~~~~~~  110 (121)
T d1oi0a_          66 FGTVHSHPSPSCRPSEEDLSLFT-----RFGKYHIIVCYPY----DENSWKCYN  110 (121)
T ss_dssp             EEEEEEESSSCCSCCHHHHHHHH-----HSCSEEEEEETTC----CTTCEEEEE
T ss_pred             EEEEEecCCCCCCcCHHHHHhhh-----ccCCEEEEEeCCC----CCCCEEEEe
Confidence            99999999999999999998753     3467999999742    333578886