Psyllid ID: psy9228

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830----
Protein Sequence
NAYIKWSRADGLPLQRYAEGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNVERMMFVDGIGPFSGESQGAFQGLDLSELVYIGAVPDFGEIHPSAGFSNGFKGCVSRLKYNKTEFELFKMAVERVGVDSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGSCQDVDGAMKCLCPIGTAGKRCEQKIKILQPAFKHGSYLAYPTPKTMRKFKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKHMEFRFDTGSATPLYSNDAPAFNPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKPLSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVGLVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANIMDCSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDSYECLCSLGYAPPNCAKRVSIGSEVHFLGEGYVELKKELIEERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNIHIQNKHISNIGSSASSGLHVMPWIRK
Secondary Structure (PSIPRED)
ccEEEEEEEccEEEEEEccccEEEEEEcEEEcccEEEEEEEEccccccccEEEEEEEEEEEEcccccEEEEEccccccccccccEEEccccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccEEccccccccEEEEcccccccccccccccccccccccccEEEccccccEEEcccccccccccccccccccccccccEEEEEccccccEEEEEEEEcccccccccEEEEEEEccccccEEEEEEEccEEEEEEEccccccccccccccccccEEEEcccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccEEccccccccccccEEEEccccccccEEEEEEEEEccccccEEEEEEcccccccccccccEEEEEEEccEEEEEEEcccEEEEEEEEEEcccEEEEEEEEEccEEEEEEcccccEEEccccccccEEccccccEEccccccccccccccccccccEEEEEcEEEccccccccccccccccccccccccccccccccccccccEEEEcccccccEEEEcccccccccccccccccccccccccccEEEEcccccEEEccccccccccccccccccccccccccEEEEccccccccccccEEEEEEEEcccccEEEEcccccccccccccEEEEEEEccEEEEEEEcccccEEEEEccccccccccEEEEEEEEccEEEEEEccEEEEEEEccccccEEEccccEEEccccccccccccccccccEEEEEEEEEccEEcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEcccEEEEEEccccEEEEccccccccccEEEEEEEccccccccEEEEEEEEEEEEcccccEccccccccEEEEccccEEEcccccccccccccccccccEEEEEEEEEcccccHHHHHHHHHcccccccccccccccccccccEEEccccccccEEccccccccccccccccccccccccccEEcccccccEEcccccccccccccccEEEEccccccEEEEEccccccccccEEEEEEEccccccEEEEEEccccccccEEEEEEEccEEEEEEEcccccEEEEcccccccccEEEEEEcccEEEEEEcccccccccccccEEcccccEcccccccccccccccccccccccEEEEccccccEEEccccEEccccccccccccccEEEccccccccccEEEEEEEEcccccEEEEEEcccccccccccccEEEEEEEccEEEEEEEccccEEEcccccccccEEEEEEEEcccEEEEEEcccccccccccccccEEEEccccEEEccccccccccccccccccccEEEEEEEEEccccccHHHHHHccccccccccccccccccccccccccEEcccccccccEEEEcccccccccccccccccccccccccccEEEEcccccEEEcccccccccccccccccEEcccccccEEEEccccccccccccEEEEEEEcccccEEEEEEccccccccccccEEEEEEEccEEEEEEEcccccEEEEEcccccccccEEEEEEEEcccEEEEEEccccccccccccccEEEEcccEEEEccccccccccccccccccEEEEEEEEEccccHHHHHHHccccccEcccccc
Coil and Loop (DISEMBL)
nayikwsradglplqryaegnVLRITNarlqdsgkykceiqghdsfrgsdyVKLNVERMMfvdgigpfsgesqgafqgldlSELVyigavpdfgeihpsagfsngfKGCVSRLKYNKTEFELFKMAVERVgvdscntcksskhnncinnglcqdaatrigytcicppgfsgdrcsvlgepcypgacgdgscqdvdgamkclcpigtagkRCEQKIKILQpafkhgsylayptpktmRKFKVSlrlnprdvrDGIILysgqsddglGDFISLAIREKHMefrfdtgsatplysndapafnpvstkeapygskitltcnndleapveytwskrsnghvlpfgafsrentltlqeiknsdagmyvckvsnkdmtveipsillvtdsvplftqkplsylalptltdaHLHFSIelsfkptdynglimytgdsnmksykgkgdfvsfgledgypvfrfDVGLVVLRSKVTLVPHEWVVVTIIKDfkegklsvggeplivgstpgeklqvlnlrtplylggyniyhvtpslsvevtegfhgcISTIDVLGSELDLINSavdsanimdcsdlesspvcapkpcqnygicyptdtsergyncscltgysgdhcekennmcmkgdvcknggmckvtpdsyeclcslgyappncakrvsigsevhfLGEGYVELKKELIEERRNeetiafdfvtddkNALLLwngqpsykngigREFIAVAVVNGYLeysydlgdgvvtikfskkpvndgikhsvNVTRINKFGSLEVDSvivgkgespgsqdvintrgniylggtpnmdlmtggryvhpmsglMMNIHIQNKhisnigssassglhvmpwirk
Flexible Loop (DISEMBL)
nayikwsradglplqryaEGNVLRITnarlqdsgkykceiqghdsfrgsDYVKLNVERMMFVDGIGPFSGESQGAFQGLDLSELVYIGAVPDFGEIHPSAGFSNGFKGCVSRLKYNKTEFELFKMAVERVGVDSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGSCQDVDGAMKCLCPIGTAGKRCEQKIKILqpafkhgsylayptpkTMRKFKVSLRLNPRDVRDGIILysgqsddglGDFISLAIREKHMEFRFDTGSATPLYSNDAPAFNPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQeiknsdagmYVCKVSNKDMTVEIPSILLVTDSVPLFTQKPLSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVGLVVLRSkvtlvphewVVVTIIKdfkegklsvggeplivgstpgekLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANIMDCSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDSYECLCSLGYAPPNCAKRVSIGSEVHFLGEGYVELKKELIEERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSkkpvndgikhsvnvtrinkfgsLEVDSVIVGkgespgsqdvintRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNIHIQNKHISNigssassglhvmpwirk
Low Complexity Region (SEG)
NAYIKWSRADGLPLQRYAEGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNVERMMFVDGIGPFSGESQGAFQGLDLSELVYIGAVPDFGEIHPSAGFSNGFKGCVSRLKYNKTEFELFKMAVERVGVDSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGSCQDVDGAMKCLCPIGTAGKRCEQKIKILQPAFKHGSYLAYPTPKTMRKFKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKHMEFRFDTGSATPLYSNDAPAFNPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKPLSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVGLVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANIMDCSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDSYECLCSLGYAPPNCAKRVSIGSEVHFLGEGYVELKKELIEERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNIHIQNKHISNIGSSASSGLHVMPWIRK
Disordered region (IsUnstruct)
**YIKWSRADGLPLQRYAEGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNVERMMFVDGIGPFSGESQGAFQGLDLSELVYIGAVPDFGEIHPSAGFSNGFKGCVSRLKYNKTEFELFKMAVERVGVDSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGSCQDVDGAMKCLCPIGTAGKRCEQKIKILQPAFKHGSYLAYPTPKTMRKFKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKHMEFRFDTGSATPLY**************APYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKPLSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVGLVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANIMDCSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDSYECLCSLGYAPPNCAKRVSIGSEVHFLGEGYVELKKELIEERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGK*******DVINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNIHIQ***********************
Disordered Region (DISOPRED)
NAYIKWSRADGLPLQRYAEGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNVERMMFVDGIGPFS*********LDLSELVYIGAVPDFGEIHPSAGFSNGFKGCVSRLKYNKTEFELFKMAVERVGVDSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGSCQDVDGAMKCLCPIGTAGKRCEQKIKILQPAFKHGSYLAYPTPKTMRKFKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKHMEFRFDTGSATPLYSNDAPAFNPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKPLSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVGLVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANIMDCSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDSYECLCSLGYAPPNCAKRVSIGSEVHFLGEGYVELKKELIEERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVG****P****VINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNIHIQNKHISN************P****
Disordered Region (DISEMBL)
NAYIKWSRADGLPLQRYAEGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNVERMMFVDGIGPFSGESQGAFQGLDLSELVYIGAVPDFGEIHPSAGFSNGFKGCVSRLKYNKTEFELFKMAVERVGVDSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGSCQDVDGAMKCLCPIGTAGKRCEQKIKILQPAFKHGSYLAYPTPKTMRKFKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKHMEFRFDTGSATPLYSNDAPAFNPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKPLSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVGLVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANIMDCSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDSYECLCSLGYAPPNCAKRVSIGSEVHFLGEGYVELKKELIEERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNIHIQNKHISNIGSSASSGLHVMPWIRK
Disordered Region (DISPRO)
NAYIKWSRADGLPLQRYAEGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNVERMMFVDGIGPFSGESQGAFQGLDLSELVYIGAVPDFGEIHPSAGFSNGFKGCVSRLKYNKTEFELFKMAVERVGVDSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGSCQDVDGAMKCLCPIGTAGKRCEQKIKILQPAFKHGSYLAYPTPKTMRKFKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKHMEFRFDTGSATPLYSNDAPAFNPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKPLSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVGLVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANIMDCSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDSYECLCSLGYAPPNCAKRVSIGSEVHFLGEGYVELKKELIEERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNIHIQNKHISNIGSSASSG*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
NAYIKWSRADGLPLQRYAEGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNVERMMFVDGIGPFSGESQGAFQGLDLSELVYIGAVPDFGEIHPSAGFSNGFKGCVSRLKYNKTEFELFKMAVERVGVDSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGSCQDVDGAMKCLCPIGTAGKRCEQKIKILQPAFKHGSYLAYPTPKTMRKFKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKHMEFRFDTGSATPLYSNDAPAFNPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKPLSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVGLVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANIMDCSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDSYECLCSLGYAPPNCAKRVSIGSEVHFLGEGYVELKKELIEERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNIHIQNKHISNIGSSASSGLHVMPWIRK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	834	2.2.26 [Sep-21-2011]
Q05793	3707	Basement membrane-specifi	no	N/A	0.478	0.107	0.337	5e-56
P98160	4391	Basement membrane-specifi	yes	N/A	0.474	0.090	0.336	6e-56
A2ASQ1	1950	Agrin OS=Mus musculus GN=	no	N/A	0.473	0.202	0.321	7e-42
P25304	1959	Agrin OS=Rattus norvegicu	yes	N/A	0.494	0.210	0.310	1e-41
A3KN33	1018	Pikachurin OS=Bos taurus	no	N/A	0.673	0.552	0.238	1e-38
O00468	2067	Agrin OS=Homo sapiens GN=	no	N/A	0.466	0.188	0.297	5e-37
Q90404	1328	Agrin (Fragment) OS=Diplo	N/A	N/A	0.411	0.258	0.280	3e-33
Q63HQ2	1017	Pikachurin OS=Homo sapien	no	N/A	0.466	0.382	0.271	4e-31
P31696	2081	Agrin OS=Gallus gallus GN	no	N/A	0.443	0.177	0.275	4e-31
Q4VBE4	1017	Pikachurin OS=Mus musculu	no	N/A	0.462	0.379	0.257	1e-30

>sp|Q05793|PGBM_MOUSE Basement membrane-specific heparan sulfate proteoglycan core protein OS=Mus musculus GN=Hspg2 PE=1 SV=1

 Score =  220 bits (560), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 148/439 (33%), Positives = 219/439 (49%), Gaps = 40/439 (9%)

Query: 393  SYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFR 452
            SYLALP LT+ H    +++ FKP + NG+++++G  +        DFVS  +  G+  FR
Sbjct: 3254 SYLALPALTNTHHELRLDVEFKPLEPNGILLFSGGKSGPVE----DFVSLAMVGGHLEFR 3309

Query: 453  FDVG--LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTP 510
            +++G  L VLRS   L    W  V+  +  K+G L V G   ++ S+PG K Q LNL T 
Sbjct: 3310 YELGSGLAVLRSHEPLALGRWHRVSAERLNKDGSLRVDGGRPVLRSSPG-KSQGLNLHTL 3368

Query: 511  LYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANIMDCSDLESSPV 570
            LYLGG     V  S +  ++  FHGC+  + V G  LDL  S + S  +  C D  SSP 
Sbjct: 3369 LYLGGVEP-SVQLSPATNMSAHFHGCVGEVSVNGKRLDLTYSFLGSQGVGQCYD--SSP- 3424

Query: 571  CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDS 630
            C  +PC+N   C P    E  + C C  G+ GD CE E N C   + C NGG C+     
Sbjct: 3425 CERQPCRNGATCMPAGEYE--FQCLCQDGFKGDLCEHEENPCQLHEPCLNGGTCR----G 3478

Query: 631  YECLCSLGYAPPNCAKRVSIG---SEVH----------------FLGEGYVELKKELIEE 671
              CLC  G++ P C +    G   S+ H                F   G++ L       
Sbjct: 3479 ARCLCLPGFSGPRCQQGAGYGVVESDWHPEGSGGNDAPGQYGAYFYDNGFLGLPGNSFSR 3538

Query: 672  RRNE--ETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVT 729
               E  ETI F+  T   + LLLW G    +    ++FI++ + +G+L +SY LG G   
Sbjct: 3539 SLPEVPETIEFEVRTSTADGLLLWQGV-VREASRSKDFISLGLQDGHLVFSYQLGSGEAR 3597

Query: 730  IKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPNM 789
            +  S  P+NDG  H +   R  + GS++VD   +  G SPG    +NT+  IY+GG P++
Sbjct: 3598 L-VSGDPINDGEWHRITALREGQRGSIQVDGEDLVTGRSPGPNVAVNTKDIIYIGGAPDV 3656

Query: 790  DLMTGGRYVHPMSGLMMNI 808
              +T G++   ++G + N+
Sbjct: 3657 ATLTRGKFSSGITGCIKNL 3675

The LG3 peptide has anti-angiogenic properties that require binding of calcium ions for full activity.
Mus musculus (taxid: 10090)

>sp|P98160|PGBM_HUMAN Basement membrane-specific heparan sulfate proteoglycan core protein OS=Homo sapiens GN=HSPG2 PE=1 SV=4

 Score =  219 bits (559), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 149/443 (33%), Positives = 224/443 (50%), Gaps = 47/443 (10%)

Query: 393  SYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFR 452
            SYLALP LT+ H    +++ FKP   +G+++++G  +        DFVS  +  G+  FR
Sbjct: 3937 SYLALPALTNTHHELRLDVEFKPLAPDGVLLFSGGKSGPVE----DFVSLAMVGGHLEFR 3992

Query: 453  FDVG--LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTP 510
            +++G  L VLRS   L    W  V+  +  K+G L V G   ++ S+PG K Q LNL T 
Sbjct: 3993 YELGSGLAVLRSAEPLALGRWHRVSAERLNKDGSLRVNGGRPVLRSSPG-KSQGLNLHTL 4051

Query: 511  LYLGGYNIYHVTPSL----SVEVTEGFHGCISTIDVLGSELDLINSAVDSANIMDCSDLE 566
            LYLGG     V PS+    +  ++  F GC+  + V G  LDL  S + S  I  C D  
Sbjct: 4052 LYLGG-----VEPSVPLSPATNMSAHFRGCVGEVSVNGKRLDLTYSFLGSQGIGQCYD-- 4104

Query: 567  SSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKV 626
            SSP C  +PCQ+   C P    E  + C C  G+ GD CE E N C   + C +GG C+ 
Sbjct: 4105 SSP-CERQPCQHGATCMPAGEYE--FQCLCRDGFKGDLCEHEENPCQLREPCLHGGTCQG 4161

Query: 627  TPDSYECLCSLGYAPPNCAKRVSIG---SEVHFLG----------------EGYVELKKE 667
            T     CLC  G++ P C +    G   S+ H  G                +G++     
Sbjct: 4162 T----RCLCLPGFSGPRCQQGSGHGIAESDWHLEGSGGNDAPGQYGAYFHDDGFLAFPGH 4217

Query: 668  LIEERRNE--ETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGD 725
            +      E  ETI  +  T   + LLLW G    + G G++FI++ + +G+L + Y LG 
Sbjct: 4218 VFSRSLPEVPETIELEVRTSTASGLLLWQGVEVGEAGQGKDFISLGLQDGHLVFRYQLGS 4277

Query: 726  GVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGG 785
            G   +  S+ P+NDG  H V   R  + GS++VD   +  G SPG    +N +G++Y+GG
Sbjct: 4278 GEARL-VSEDPINDGEWHRVTALREGRRGSIQVDGEELVSGRSPGPNVAVNAKGSVYIGG 4336

Query: 786  TPNMDLMTGGRYVHPMSGLMMNI 808
             P++  +TGGR+   ++G + N+
Sbjct: 4337 APDVATLTGGRFSSGITGCVKNL 4359

The LG3 peptide has anti-angiogenic properties that require binding of calcium ions for full activity.

Homo sapiens (taxid: 9606)

>sp|A2ASQ1|AGRIN_MOUSE Agrin OS=Mus musculus GN=Agrn PE=1 SV=1

 Score =  173 bits (438), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 139/433 (32%), Positives = 206/433 (47%), Gaps = 38/433 (8%)

Query: 383  SVPLFTQKPLSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSF 442
            SVP F  K  S+LA PTL   H    + L F+  +  GL++Y G++  K      DF++ 
Sbjct: 1255 SVPAF--KGHSFLAFPTLRAYHT-LRLALEFRALETEGLLLYNGNARGK------DFLAL 1305

Query: 443  GLEDGYPVFRFDVGL--VVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGE 500
             L DG+  FRFD G    VL S V + P  W  + + + +++G LSV GE  +VG +P  
Sbjct: 1306 ALLDGHVQFRFDTGSGPAVLTSLVPVEPGRWHRLELSRHWRQGTLSVDGEAPVVGESP-S 1364

Query: 501  KLQVLNLRTPLYLGGYNIYHVTPSLS-VEVTEGFHGCISTIDVLGSELDLIN---SAVDS 556
                LNL T LY+GG     V   L    V  G  GCI  +D+   +L+L +   + V S
Sbjct: 1365 GTDGLNLDTKLYVGGLPEEQVATVLDRTSVGIGLKGCIRMLDINNQQLELSDWQRAVVQS 1424

Query: 557  ANIMDCSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGD 616
            + + +C D      C+P PC    +C   +     + C C  G  G  C  E N C   +
Sbjct: 1425 SGVGECGDHP----CSPNPCHGGALCQALEAGV--FLCQCPPGRFGPTCADEKNPCQP-N 1477

Query: 617  VCKNGGMCKV-TPDSYECLCSLGYAPPNCAKRVSIGSEVHFL----GEGYVELKKELIEE 671
             C     C V +    +C C LG +   C   +       FL    G  Y+ELK     E
Sbjct: 1478 PCHGSAPCHVLSRGGAKCACPLGRSGSFCETVLENAGSRPFLADFNGFSYLELKGLHTFE 1537

Query: 672  RRNEETIAFD--FVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVT 729
            R   E +A +  F+    + LLL+NGQ +   G   +F+++A+ N +LE+ YDLG G   
Sbjct: 1538 RDLGEKMALEMVFLARGPSGLLLYNGQKTDGKG---DFVSLALHNRHLEFRYDLGKGAAI 1594

Query: 730  IKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDV----INTRGNIYLGG 785
            I+ SK+P+  G    V + R  + G+L+V       GESP S+ V    +N +  +Y+GG
Sbjct: 1595 IR-SKEPIALGTWVRVFLERNGRKGALQVGDGPRVLGESPKSRKVPHTMLNLKEPLYVGG 1653

Query: 786  TPNMDLMTGGRYV 798
             P+   +  G  V
Sbjct: 1654 APDFSKLARGAAV 1666

Plays a central role in the formation and the maintenance of the neuromuscular junction (NMJ), the synapse between motor neuron and skeletal muscle. Ligand of the MUSK signaling complex that directly binds LRP4 in this complex and induces the phosphorylation of MUSK, the kinase of the complex. The activation of MUSK in myotubes induces the formation of NMJ by regulating different processes including the transcription of specific genes and the clustering of AChR in the postsynaptic membrane.

Mus musculus (taxid: 10090)

>sp|P25304|AGRIN_RAT Agrin OS=Rattus norvegicus GN=Agrn PE=1 SV=2

 Score =  172 bits (435), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 140/451 (31%), Positives = 214/451 (47%), Gaps = 39/451 (8%)

Query: 383  SVPLFTQKPLSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSF 442
            S+P F  K  S+LA PTL   H    + L F+  +  GL++Y G++  K      DF++ 
Sbjct: 1264 SMPAF--KGHSFLAFPTLRAYHT-LRLALEFRALETEGLLLYNGNARGK------DFLAL 1314

Query: 443  GLEDGYPVFRFDVGL--VVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGE 500
             L DG   FRFD G    VL S V + P  W  + + + +++G LSV GE  +VG +P  
Sbjct: 1315 ALLDGRVQFRFDTGSGPAVLTSLVPVEPGRWHRLELSRHWRQGTLSVDGETPVVGESP-S 1373

Query: 501  KLQVLNLRTPLYLGGYNIYHVTPSLS-VEVTEGFHGCISTIDVLGSELDLIN---SAVDS 556
                LNL T LY+GG     V   L    V  G  GCI  +D+   +L+L +   +AV S
Sbjct: 1374 GTDGLNLDTNLYVGGIPEEQVAMVLDRTSVGVGLKGCIRMLDINNQQLELSDWQRAAVQS 1433

Query: 557  ANIMDCSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGD 616
            + + +C D      C P PC    +C   +     + C C  G  G  C  E + C   +
Sbjct: 1434 SGVGECGDHP----CLPNPCHGGALCQALEAGM--FLCQCPPGRFGPTCADEKSPCQP-N 1486

Query: 617  VCKNGGMCKV-TPDSYECLCSLGYAPPNCAKRVSIGSEVHFL----GEGYVELKKELIEE 671
             C     C+V +    +C C LG +   C   +       FL    G  Y+ELK     E
Sbjct: 1487 PCHGAAPCRVLSSGGAKCECPLGRSGTFCQTVLETAGSRPFLADFNGFSYLELKGLHTFE 1546

Query: 672  RRNEETIAFD--FVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVT 729
            R   E +A +  F+    + LLL+NGQ +   G   +F+++A+ N +LE+ YDLG G   
Sbjct: 1547 RDLGEKMALEMVFLARGPSGLLLYNGQKTDGKG---DFVSLALHNRHLEFCYDLGKGAAV 1603

Query: 730  IKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDV----INTRGNIYLGG 785
            I+ SK+P+  G    V + R  + G+L+V       GESP S+ V    +N +  +Y+GG
Sbjct: 1604 IR-SKEPIALGTWVRVFLERNGRKGALQVGDGPRVLGESPKSRKVPHTMLNLKEPLYIGG 1662

Query: 786  TPNMDLMTGGRYVHP-MSGLMMNIHIQNKHI 815
             P+   +  G  V    SG++  + ++   +
Sbjct: 1663 APDFSKLARGAAVSSGFSGVIQLVSLRGHQL 1693

Plays a central role in the formation and the maintenance of the neuromuscular junction (NMJ), the synapse between motor neuron and skeletal muscle. Ligand of the MUSK signaling complex that directly binds LRP4 in this complex and induces the phosphorylation of MUSK, the kinase of the complex. The activation of MUSK in myotubes induces the formation of NMJ by regulating different processes including the transcription of specific genes and the clustering of AChR in the postsynaptic membrane.

Rattus norvegicus (taxid: 10116)

>sp|A3KN33|EGFLA_BOVIN Pikachurin OS=Bos taurus GN=EGFLAM PE=2 SV=1

 Score =  162 bits (410), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 164/687 (23%), Positives = 274/687 (39%), Gaps = 125/687 (18%)

Query: 196  GAMKCLCPIGTAGKRCEQKIKILQPAFKHGSYLAY-PTPKTMRKFKVSLRLNPRDVRDGI 254
            G  +C C +G  G+ C + I I  P F   SY+ + P   + + F+++L     +  DG+
Sbjct: 374  GGSRCHCNLGKGGESCSEDIVIQYPQFFGHSYVTFEPLKNSYQAFQITLEFR-AEAEDGL 432

Query: 255  ILYSGQSDDGLGDFISLAIREKHMEFRFDTGSATP-----------------LYSNDAPA 297
            +LY G+++ G GDF+SLA+  + ++FRF+ G+                    LY +    
Sbjct: 433  LLYCGENEHGRGDFMSLAVIRRSLQFRFNCGTGVAIIVSETKIKLGGWHTVTLYRDGLNG 492

Query: 298  F------NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRS----------------NGH 335
                    PV+ +     SKIT      L       W  R+                NG 
Sbjct: 493  LLQLNNGTPVTGQSQGQYSKITFRTPLYLGGAPSAYWLVRATGTNRGFQGCVQALTVNGK 552

Query: 336  VLPFGAFSRENTLTLQEIKNSDAGMY---------VCKVSNKDMTVEIPSILL------- 379
             L    +     L+  ++    +G+           C  S  D  + +  +         
Sbjct: 553  RLDLRPWPLGKALSGADVGECSSGICDEASCINGGTCMASKADSYICLCPLGFRGRHCED 612

Query: 380  -VTDSVPLFTQKPLSYLALPTLTDAHLHFSI---ELSFKPTDYNGLIMYTGDSNMKSYKG 435
              T ++P F +   SY A P   +   + S    E++F+P   +G+++Y+ D+      G
Sbjct: 613  AFTLTIPQFKESLRSYAATPWPLEPRHYLSFMEFEVTFRPDSEDGVLLYSYDT------G 666

Query: 436  KGDFVSFGLEDGYPVFRFDVG--LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLI 493
              DF+S  +  G+  FRFD G    VLRS+  L    W  + + +  K G L V  +  +
Sbjct: 667  SKDFLSINMAGGHVEFRFDCGSGTGVLRSEEPLTLGHWHELCVSRTAKNGILQVDKQKAV 726

Query: 494  VGSTPGEKLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSA 553
             G   G   Q+    + +++GG   Y      S  + + F G I  I +    + + +  
Sbjct: 727  EGMAEGGFTQI-KCNSDIFIGGVPNYDDVKKNS-GILKPFSGSIQKIILNDRTIHVKHDF 784

Query: 554  VDSANIMDCSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCM 613
                N+ +          A  PC                                     
Sbjct: 785  TWGVNVEN----------AAHPC------------------------------------- 797

Query: 614  KGDVCKNGGMCKVTPDSYECLCSLGYAPPNCAKRVSIGSEV-HFLGEGYVELKKELIEER 672
             G  C +GG C+   + YEC C LG+   +C K ++   E+  F+G  Y+      I +R
Sbjct: 798  VGSPCAHGGSCRPRKEGYECDCPLGFEGLHCQKAITEAIEIPQFIGRSYLTYDNPDILKR 857

Query: 673  -RNEETIAF-DFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTI 730
                 + AF  F T  K+ LLLW G    +     +FI++ + +G L +SY+LG GV +I
Sbjct: 858  VSGSRSNAFMRFKTTAKDGLLLWRGDSPMRPN--SDFISLGLRDGALVFSYNLGSGVASI 915

Query: 731  KFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPNMD 790
              +    NDG  H V   R  + G + VD      G+SPG    +N  G +Y+GG   + 
Sbjct: 916  MVNGS-FNDGRWHRVKAVRDGQSGKITVDDYGARTGKSPGMMRQLNINGALYVGGMKEIA 974

Query: 791  LMTGGRYVHPMSGLMMNIHIQ-NKHIS 816
            L T  +Y+  + G + +  +  + HIS
Sbjct: 975  LHTNRQYMRGLVGCISHFTLSTDYHIS 1001

Involved in both the retinal photoreceptor ribbon synapse formation and physiological functions of visual perception. Necessary for proper bipolar dendritic tip apposition to the photoreceptor ribbon synapse. Promotes matrix assembly and cell adhesiveness.

Bos taurus (taxid: 9913)

>sp|O00468|AGRIN_HUMAN Agrin OS=Homo sapiens GN=AGRN PE=1 SV=5

 Score =  156 bits (395), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 127/427 (29%), Positives = 195/427 (45%), Gaps = 38/427 (8%)

Query: 384  VPLFTQKPLSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFG 443
            VP F  +  S+LA PTL   H    + L F+  +  GL++Y G++  K      DF++  
Sbjct: 1374 VPAFEGR--SFLAFPTLRAYHT-LRLALEFRALEPQGLLLYNGNARGK------DFLALA 1424

Query: 444  LEDGYPVFRFDVG--LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEK 501
            L DG    RFD G    VL S V + P +W  + + + ++ G LSV GE  ++G +P   
Sbjct: 1425 LLDGRVQLRFDTGSGPAVLTSAVPVEPGQWHRLELSRHWRRGTLSVDGETPVLGESP-SG 1483

Query: 502  LQVLNLRTPLYLGGYNIYHVTPSLSVE-VTEGFHGCISTIDVLGSELDL---INSAVDSA 557
               LNL T L++GG        +L    V  G  GCI  +DV    L+L     +A   +
Sbjct: 1484 TDGLNLDTDLFVGGVPEDQAAVALERTFVGAGLRGCIRLLDVNNQRLELGIGPGAATRGS 1543

Query: 558  NIMDCSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDV 617
             + +C D      C P PC     C   +     ++C C  G  G  C  E + C   + 
Sbjct: 1544 GVGECGDHP----CLPNPCHGGAPCQNLEAGR--FHCQCPPGRVGPTCADEKSPCQP-NP 1596

Query: 618  CKNGGMCKVTPD-SYECLCSLGYAPPNCAKRVSIGSEVHFL----GEGYVELKKELIEER 672
            C     C+V P+   +C C LG     C           FL    G  ++EL+      R
Sbjct: 1597 CHGAAPCRVLPEGGAQCECPLGREGTFCQTASGQDGSGPFLADFNGFSHLELRGLHTFAR 1656

Query: 673  RNEETIAFD--FVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTI 730
               E +A +  F+    + LLL+NGQ +   G   +F+++A+ +  LE+ YDLG G   I
Sbjct: 1657 DLGEKMALEVVFLARGPSGLLLYNGQKTDGKG---DFVSLALRDRRLEFRYDLGKGAAVI 1713

Query: 731  KFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQD----VINTRGNIYLGGT 786
            + S++PV  G    V++ R  + G+L V       GESP S+     V+N +  +Y+GG 
Sbjct: 1714 R-SREPVTLGAWTRVSLERNGRKGALRVGDGPRVLGESPKSRKVPHTVLNLKEPLYVGGA 1772

Query: 787  PNMDLMT 793
            P+   + 
Sbjct: 1773 PDFSKLA 1779

Plays a central role in the formation and the maintenance of the neuromuscular junction (NMJ), the synapse between motor neuron and skeletal muscle. Ligand of the MUSK signaling complex that directly binds LRP4 in this complex and induces the phosphorylation of MUSK, the kinase of the complex. The activation of MUSK in myotubes induces the formation of NMJ by regulating different processes including the transcription of specific genes and the clustering of AChR in the postsynaptic membrane.

Homo sapiens (taxid: 9606)

>sp|Q90404|AGRIN_DIPOM Agrin (Fragment) OS=Diplobatis ommata GN=AGRN PE=2 SV=1

 Score =  144 bits (363), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 114/407 (28%), Positives = 192/407 (47%), Gaps = 64/407 (15%)

Query: 392  LSYLALPTL----TDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDG 447
            LSYL +  +    +D     S+E+ F   D NG+I Y G    +   G+GDFVS  L DG
Sbjct: 922  LSYLEMNGIHTFVSDLLQKLSMEVIFLAKDPNGMIFYNG----QKTDGRGDFVSLNLRDG 977

Query: 448  YPVFRFDV--GLVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQ-- 503
            Y  F++D+  G  VLRSK  +  + W VVT+ ++ ++G + +  + L+ G +P  +    
Sbjct: 978  YLEFKYDLGKGAAVLRSKAPIPLNVWNVVTVERNGRKGLMKINKDELVSGESPKSRKAPH 1037

Query: 504  -VLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANIMDC 562
              LNL+   Y+GG   ++   + +  +  GF G I  + +    + L+    +  N M+ 
Sbjct: 1038 TALNLKEAFYVGGAPDFNKF-ARAAGIISGFTGAIQKLSL--KSIPLLKKE-NIRNAMEI 1093

Query: 563  SDLESSPVCAPK-PCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNG 621
            S+         + PCQN G+C P     R Y+C C  G+SG  CEK              
Sbjct: 1094 SNFRWHACTKTRNPCQNGGVCSP---RLREYDCMCQRGFSGPQCEKA------------- 1137

Query: 622  GMCKVTPDSYECLCSLGYAPPNCAKRVSIGSE-VHFLGEGYVELKKELIEERRNEETIAF 680
                                    ++ + GSE V F G  ++E    +    +  +   F
Sbjct: 1138 ----------------------LEEKSASGSESVAFNGRTFIEYHNTVTRSEKAVQVNYF 1175

Query: 681  DFV--TDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKKPVN 738
            +    T+    L+LW+G+ + K+    ++IA+AVV+G+++ +YDLG   VT++ S  PVN
Sbjct: 1176 EMSIKTEATKGLILWSGKIAEKS----DYIALAVVDGFVQMTYDLGSKPVTLR-STIPVN 1230

Query: 739  DGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGG 785
                  +   RI+ +G+L+V +     G SP +   ++T G ++LGG
Sbjct: 1231 TNQWVRIKANRIHGYGTLQVGNEAPVTGSSPFAATQLDTDGALWLGG 1277

Plays a central role in the formation and the maintenance of the neuromuscular junction (NMJ), the synapse between motor neuron and skeletal muscle. Ligand of the MUSK signaling complex that induces the phosphorylation of MUSK, the kinase of the complex. The activation of MUSK in myotubes induces the formation of NMJ by regulating different processes including the transcription of specific genes and the clustering of AChR in the postsynaptic membrane.

Discopyge ommata (taxid: 7785)

>sp|Q63HQ2|EGFLA_HUMAN Pikachurin OS=Homo sapiens GN=EGFLAM PE=1 SV=2

 Score =  137 bits (344), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 120/442 (27%), Positives = 192/442 (43%), Gaps = 53/442 (11%)

Query: 381  TDSVPLFTQKPLSYLALPTLTDAHLHFSI---ELSFKPTDYNGLIMYTGDSNMKSYKGKG 437
            T ++P F +   SY A P   +   + S    E++F+P   +G+++Y+ D+      G  
Sbjct: 606  TLTIPQFRESLRSYAATPWPLEPQHYLSFMEFEITFRPDSGDGVLLYSYDT------GSK 659

Query: 438  DFVSFGLEDGYPVFRFDVG--LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVG 495
            DF+S  L  G+  FRFD G    VLRS+  L    W  + + +  K G L V  + ++ G
Sbjct: 660  DFLSINLAGGHVEFRFDCGSGTGVLRSEDPLTLGNWHELRVSRTAKNGILQVDKQKIVEG 719

Query: 496  STPGEKLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAVD 555
               G   Q+    T +++GG   Y      S  V + F G I  I +    + + +    
Sbjct: 720  MAEGGFTQI-KCNTDIFIGGVPNYDDVKKNS-GVLKPFSGSIQKIILNDRTIHVKHDFTS 777

Query: 556  SANIMDCSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKG 615
              N+ + +       C   PC + G C P    + GY+C C  G+ G HC+KE   C  G
Sbjct: 778  GVNVENAAH-----PCVRAPCAHGGSCRP---RKEGYDCDCPLGFEGLHCQKE---C--G 824

Query: 616  DVCKNGGMCKVTPDSYECLCSLGYAPPNCAKRVSIGSEVHFLGEGYVELKKELIEERRNE 675
            + C N  +  +    +     L Y  P+  KRVS                        + 
Sbjct: 825  NYCLNTIIEAIEIPQFIGRSYLTYDNPDILKRVS-----------------------GSR 861

Query: 676  ETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKK 735
              +   F T  K+ LLLW G    +     +FI++ + +G L +SY+LG GV +I  +  
Sbjct: 862  SNVFMRFKTTAKDGLLLWRGDSPMRP--NSDFISLGLRDGALVFSYNLGSGVASIMVNGS 919

Query: 736  PVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPNMDLMTGG 795
              NDG  H V   R  + G + VD      G+SPG    +N  G +Y+GG   + L T  
Sbjct: 920  -FNDGRWHRVKAVRDGQSGKITVDDYGARTGKSPGMMRQLNINGALYVGGMKEIALHTNR 978

Query: 796  RYVHPMSGLMMNIHIQ-NKHIS 816
            +Y+  + G + +  +  + HIS
Sbjct: 979  QYMRGLVGCISHFTLSTDYHIS 1000

Involved in both the retinal photoreceptor ribbon synapse formation and physiological functions of visual perception. Necessary for proper bipolar dendritic tip apposition to the photoreceptor ribbon synapse. Promotes matrix assembly and cell adhesiveness.

Homo sapiens (taxid: 9606)

>sp|P31696|AGRIN_CHICK Agrin OS=Gallus gallus GN=AGRN PE=1 SV=3

 Score =  137 bits (344), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 113/410 (27%), Positives = 188/410 (45%), Gaps = 40/410 (9%)

Query: 392  LSYLALPTLTDAHL---HFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGY 448
             SYL L  L    L     S+E+ F     +G+I Y G    +   GKGDFVS  L DGY
Sbjct: 1658 FSYLELNGLQTLFLTCRQMSMEVVFLAKSPSGMIFYNG----QKTDGKGDFVSLALHDGY 1713

Query: 449  PVFRFDV--GLVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKL---Q 503
              +R+D+  G  VLRSK  +  + W+ V + +  ++G + +     ++G +P  +     
Sbjct: 1714 LEYRYDLGKGAAVLRSKEPVPLNTWISVLLERSGRKGVMRINNGERVMGESPKSRKVPHA 1773

Query: 504  VLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANIMDCS 563
             LNL+ P Y+GG   +    + +  ++  F+G +  I + G  L L    + SA  ++ S
Sbjct: 1774 FLNLKEPFYVGGAPDFSKL-ARAAAISTSFYGAVQRISIKGVPL-LKEQHIRSA--VEIS 1829

Query: 564  DLESSPVCA-PKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGG 622
               + P    P PCQN G C P   S   Y C+C  G+SG HCEK       GD      
Sbjct: 1830 TFRAHPCTQKPNPCQNGGTCSPRLES---YECACQRGFSGAHCEKVIIEKAAGD------ 1880

Query: 623  MCKVTPDSYECLCSLGYAPPNCAKRVSIGSEVHFLGEGYVELKKELIEERRNEETIAFDF 682
                   +++    + Y   N   +  + +E+       ++   E  E+           
Sbjct: 1881 ---AEAIAFDGRTYMEYH--NAVTKSHLSNEIP--APDALDYPAEPSEKALQSNHFELSI 1933

Query: 683  VTDDKNALLLWNGQPSYKNGIGR-EFIAVAVVNGYLEYSYDLGDGVVTIKFSKKPVNDGI 741
             T+    L+LW+G+     G+ R ++IA+A+V+G+++  YDLG   V ++ S  P+N   
Sbjct: 1934 KTEATQGLILWSGK-----GLERSDYIALAIVDGFVQMMYDLGSKPVVLR-STVPINTNH 1987

Query: 742  KHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPNMDL 791
               +   R+ + GSL+V +     G SP     ++T G ++LGG   + +
Sbjct: 1988 WTHIKAYRVQREGSLQVGNEAPITGSSPLGATQLDTDGALWLGGMERLSV 2037

Plays a central role in the formation and the maintenance of the neuromuscular junction (NMJ), the synapse between motor neuron and skeletal muscle. Ligand of the MUSK signaling complex that induces the phosphorylation of MUSK, the kinase of the complex. The activation of MUSK in myotubes induces the formation of NMJ by regulating different processes including the transcription of specific genes and the clustering of AChR in the postsynaptic membrane.

Gallus gallus (taxid: 9031)

>sp|Q4VBE4|EGFLA_MOUSE Pikachurin OS=Mus musculus GN=Egflam PE=1 SV=1

 Score =  135 bits (341), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 117/455 (25%), Positives = 203/455 (44%), Gaps = 69/455 (15%)

Query: 386 LFTQKPL----SYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVS 441
           +F Q P     SY+    L +++  F + L F+    +GL++Y G+S      G+GDF+S
Sbjct: 384 IFIQYPQFFGHSYVTFEPLKNSYQAFQVTLEFRAEAEDGLLLYCGESE----HGRGDFMS 439

Query: 442 FGLEDGYPVFRFD--VGLVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPG 499
             L      FRF+   G+ ++ S+  +    W  VT+ +D   G L +     + G + G
Sbjct: 440 LALIRRSLHFRFNCGTGIAIIISETKIKLGAWHTVTLYRDGLNGMLQLNNGTPVTGQSQG 499

Query: 500 EKLQVLNLRTPLYLGGY-NIYHVTPSLSVEVTEGFHGCISTIDVLGSELDL----INSAV 554
           +  ++   RTPLYLGG  + Y +    +     GF GC+ ++ V G ++D+    +  A+
Sbjct: 500 QYSKI-TFRTPLYLGGAPSAYWLV--RATGTNRGFQGCVQSLSVNGKKIDMRPWPLGKAL 556

Query: 555 DSANIMDCSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMK 614
           + A++ +C    SS +C    C + G C         Y C C  G+ G HCE    + + 
Sbjct: 557 NGADVGEC----SSGICDEASCIHGGTCAAIKADS--YICLCPLGFRGRHCEDAFALTI- 609

Query: 615 GDVCKNGGMCKVTPDSYECLCSLGYAPPNCAKRVSIGSEVHFLGEGYVELKKELIEERRN 674
                        P   E L S    P     +       H+L     E+          
Sbjct: 610 -------------PQFRESLRSYAATPWPLEPQ-------HYLSFTEFEIT--------- 640

Query: 675 EETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSK 734
                  F  D  + +LL+    SY  G  ++F+++ +  G++E+ +D G G   ++ S+
Sbjct: 641 -------FRPDSGDGVLLY----SYDTG-SKDFLSINMAAGHVEFRFDCGSGTGVLR-SE 687

Query: 735 KPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPNM-DLMT 793
            P+  G  H + V+R  K G L+VD   V +G + G    I    +I++GG PN  D+  
Sbjct: 688 APLTLGQWHDLRVSRTAKNGILQVDKQKVVEGMAEGGFTQIKCNTDIFIGGVPNYDDVKK 747

Query: 794 GGRYVHPMSGLMMNIHIQNKHISNIGSSASSGLHV 828
               +HP SG +  I + ++ I ++    +SG++V
Sbjct: 748 NSGILHPFSGSIQKIILNDRTI-HVKHDFTSGVNV 781

Involved in both the retinal photoreceptor ribbon synapse formation and physiological functions of visual perception. Necessary for proper bipolar dendritic tip apposition to the photoreceptor ribbon synapse. Promotes matrix assembly and cell adhesiveness.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	834
189237255	4254	PREDICTED: similar to AGAP003656-PA [Tri	0.517	0.101	0.394	3e-86
270008326	3943	hypothetical protein TcasGA2_TC030735 [T	0.515	0.109	0.391	2e-84
321479130	819	hypothetical protein DAPPUDRAFT_186952 [	0.509	0.518	0.370	1e-74
307203130	3454	Basement membrane-specific heparan sulfa	0.504	0.121	0.361	3e-71
307169661	3395	Basement membrane-specific heparan sulfa	0.515	0.126	0.347	1e-69
380020744	489	PREDICTED: pikachurin-like [Apis florea]	0.474	0.809	0.370	2e-68
332025352	3377	Basement membrane-specific heparan sulfa	0.503	0.124	0.340	4e-68
328783871	492	PREDICTED: pikachurin-like [Apis mellife	0.474	0.804	0.363	3e-67
350402224	519	PREDICTED: pikachurin-like isoform 1 [Bo	0.495	0.795	0.344	1e-65
340729482	454	PREDICTED: pikachurin-like [Bombus terre	0.491	0.903	0.344	1e-65

>gi|189237255|ref|XP_972068.2| PREDICTED: similar to AGAP003656-PA [Tribolium castaneum]

 Score =  326 bits (836), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 186/472 (39%), Positives = 275/472 (58%), Gaps = 40/472 (8%)

Query: 393  SYLALPTLTDAHLHFSIELSFKPTD-YNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVF 451
            +Y+A P +      F   L  KPTD  +G+++Y  +++    +G GDFVS  ++D +  F
Sbjct: 3792 AYIAYP-VPKLQRRFKAALKIKPTDNRDGILLYCAETD----EGHGDFVSLAIKDRHIEF 3846

Query: 452  RFDVG--LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRT 509
             F+VG   V +RS+  + P EW V+T  +   EG+L V GE    G+TPG   + LNL T
Sbjct: 3847 NFNVGGRPVTIRSEKEVRPGEWHVLTATRSLSEGRLIVDGE-TTFGTTPGNH-KTLNLLT 3904

Query: 510  PLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANIMDCSDL---- 565
             LY+GGY+  ++  +  V V  GF+GCIS I + G +LD+INSA DSAN+M+CS L    
Sbjct: 3905 RLYVGGYDSENIKINDKVGVHSGFNGCISEIKMSGLDLDVINSAEDSANVMECSSLDNEV 3964

Query: 566  -----------ESSPV-----------CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGD 603
                       E++P            C+  PC+N G CYP   S   YNC+CL+G+SG 
Sbjct: 3965 DNNVGGFEYVHENTPTTSQPYNSRRTGCSSNPCKNGGQCYPL--SPMDYNCNCLSGFSGK 4022

Query: 604  HCEKENNMCMKGDVCKNGGMCKVTPDSYECLCSLGYAPPNCAKRVSIGSEVHFLGEGYVE 663
             CE E N+C +   C+NGG C      YEC C L ++  NC  RV + ++ HF G+GY+E
Sbjct: 4023 DCEIEMNICEQKIPCQNGGTCSGNATGYECSCPLLFSGKNCELRVELRNDAHFNGKGYLE 4082

Query: 664  LKKELIEE-RRNE-ETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSY 721
              ++L++  + NE E IA +  T+  + L+ W+GQ   ++G G+ +I++ VVNGYLE+SY
Sbjct: 4083 FDRDLLDHIKENEDELIAVELSTNSSDGLVFWHGQTPNEDGQGKNYISLGVVNGYLEFSY 4142

Query: 722  DLGDGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNI 781
            DLG G   I+ ++K V+DG +HS  + R  + GS+E+D+     GESPG  + ++  GNI
Sbjct: 4143 DLGSGPAIIRNTQKRVDDGQRHSAILKRRGRVGSIEIDNAYTQTGESPGFTNTLSCAGNI 4202

Query: 782  YLGGTPNMDLMTGGRYVHPMSGLMMNIHIQNKHISNIGSSASSGLHVMPWIR 833
            YLGG PN+ LMTG R+ H   G +    +QN    ++G  A SG++V P  R
Sbjct: 4203 YLGGAPNIGLMTGRRFSHGFDGCVHAFELQNLKTLDLGIRAISGVNVKPCSR 4254

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270008326|gb|EFA04774.1| hypothetical protein TcasGA2_TC030735 [Tribolium castaneum]

 Score =  320 bits (821), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 185/472 (39%), Positives = 275/472 (58%), Gaps = 42/472 (8%)

Query: 393  SYLALPTLTDAHLHFSIELSFKPTD-YNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVF 451
            +Y+A P +      F   L  KPTD  +G+++Y  +++    +G GDFVS  ++D +  F
Sbjct: 3449 AYIAYP-VPKLQRRFKAALKIKPTDNRDGILLYCAETD----EGHGDFVSLAIKDRHIEF 3503

Query: 452  RFDVG--LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRT 509
             F+VG   V +RS+  + P EW V+T  +   EG+L V GE    G+TPG   + LNL T
Sbjct: 3504 NFNVGGRPVTIRSEKEVRPGEWHVLTATRSLSEGRLIVDGE-TTFGTTPGNH-KTLNLLT 3561

Query: 510  PLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANIMDCSDL---- 565
             LY+GGY+  ++  +  V V  GF+GCIS  ++ G +LD+INSA DSAN+M+CS L    
Sbjct: 3562 RLYVGGYDSENIKINDKVGVHSGFNGCIS--EMSGLDLDVINSAEDSANVMECSSLDNEV 3619

Query: 566  -----------ESSPV-----------CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGD 603
                       E++P            C+  PC+N G CYP   S   YNC+CL+G+SG 
Sbjct: 3620 DNNVGGFEYVHENTPTTSQPYNSRRTGCSSNPCKNGGQCYPL--SPMDYNCNCLSGFSGK 3677

Query: 604  HCEKENNMCMKGDVCKNGGMCKVTPDSYECLCSLGYAPPNCAKRVSIGSEVHFLGEGYVE 663
             CE E N+C +   C+NGG C      YEC C L ++  NC  RV + ++ HF G+GY+E
Sbjct: 3678 DCEIEMNICEQKIPCQNGGTCSGNATGYECSCPLLFSGKNCELRVELRNDAHFNGKGYLE 3737

Query: 664  LKKELIEE-RRNE-ETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSY 721
              ++L++  + NE E IA +  T+  + L+ W+GQ   ++G G+ +I++ VVNGYLE+SY
Sbjct: 3738 FDRDLLDHIKENEDELIAVELSTNSSDGLVFWHGQTPNEDGQGKNYISLGVVNGYLEFSY 3797

Query: 722  DLGDGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNI 781
            DLG G   I+ ++K V+DG +HS  + R  + GS+E+D+     GESPG  + ++  GNI
Sbjct: 3798 DLGSGPAIIRNTQKRVDDGQRHSAILKRRGRVGSIEIDNAYTQTGESPGFTNTLSCAGNI 3857

Query: 782  YLGGTPNMDLMTGGRYVHPMSGLMMNIHIQNKHISNIGSSASSGLHVMPWIR 833
            YLGG PN+ LMTG R+ H   G +    +QN    ++G  A SG++V P  R
Sbjct: 3858 YLGGAPNIGLMTGRRFSHGFDGCVHAFELQNLKTLDLGIRAISGVNVKPCSR 3909

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321479130|gb|EFX90086.1| hypothetical protein DAPPUDRAFT_186952 [Daphnia pulex]

 Score =  287 bits (735), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 168/453 (37%), Positives = 248/453 (54%), Gaps = 28/453 (6%)

Query: 385 PLFTQKPLSYLALPTL-TDAHLHFSIELSFKPTDY-NGLIMYTGDSNMKSYKGKGDFVSF 442
           P FT+   S++A PT   +A     + +  KP    + L+ Y      ++  G GDF S 
Sbjct: 270 PAFTEG--SFIAYPTPPKNALRKMRMSMRIKPRQIKDSLLAYCA----QTEDGSGDFSSL 323

Query: 443 GLEDGYPVFRFDVGL--VVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGE 500
            ++D    FRFD G    +LRS   +   EWV +T  + F++G L V     + G +PG 
Sbjct: 324 AIKDKRVEFRFDSGSGPAILRSDREIRAGEWVQITADRSFRDGVLFVNDGSEVRGKSPGS 383

Query: 501 KLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANIM 560
             + LNL + L++GG++  HV  S  V VT  F GC+S  +V G ELDL+NS +DSAN+ 
Sbjct: 384 T-RGLNLNSRLFVGGWDRQHVRLSPGVNVTSSFDGCLSQFEVQGMELDLVNSVIDSANVE 442

Query: 561 DCSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKN 620
           DC     +  C  KPC N G+C  T  S   Y C C          +E ++C     C+N
Sbjct: 443 DCG---GASACERKPCSNGGLCTETGASLTDYTCQC----------EEADLCQVIRPCQN 489

Query: 621 GGMCKVTPDSYECLCSLGYAPPNCAKRVSIGSEVHFLGEGYVELKKELI--EERRNEETI 678
           GG C  T ++Y+C C +G+   NC ++V +  E  F G+ YVE+ K +         ETI
Sbjct: 490 GGSCIGTYNAYKCNCPMGFGGSNCERKVDVAEEAFFQGDSYVEIDKAVFPHTSANTAETI 549

Query: 679 AFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKKPVN 738
             +F T + N +LLW+GQ     G G++F+++ VV+G LE+SY+LG G V I  +   V+
Sbjct: 550 TVEFSTLEPNGILLWHGQKPESTGRGQDFVSLTVVDGRLEFSYELGSGPVQI-ITPVRVD 608

Query: 739 DGIKHSVNVTRINKFGSLEVDSVIVGKGESP-GSQDVINTRGNIYLGGTPNMDLMTGGRY 797
           DG +H     R  + GSLE+D VI+  G SP G   V+NT+GNIY+GG PN + MT GRY
Sbjct: 609 DGKRHRAVARRTARDGSLELDGVILENGRSPEGPHQVLNTKGNIYVGGLPNAEAMTTGRY 668

Query: 798 VHPMSGLMMNIHIQNKHISNIGSSASSGLHVMP 830
           +H + G + ++ IQ   + N   +A S ++V+P
Sbjct: 669 IHGLKGCIHHLEIQESGVINFQRAALSAINVVP 701

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307203130|gb|EFN82310.1| Basement membrane-specific heparan sulfate proteoglycan core protein [Harpegnathos saltator]

 Score =  276 bits (706), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 165/456 (36%), Positives = 248/456 (54%), Gaps = 35/456 (7%)

Query: 403  AHLHFSIELSFKPTDY-NGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVGL--VV 459
            A     + +SF PTD  +G++MY   S+    +G GDF +  + D +  FRFD+G    V
Sbjct: 2924 ALRRLKVAMSFNPTDTGDGILMYCSQSD----EGLGDFAALVIRDQHVEFRFDIGSGEAV 2979

Query: 460  LRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIY 519
            +RS  T+ P  W  VT+ +DFKE KLSV GEP + G  PG   + + L TPLY+GG +  
Sbjct: 2980 IRSPYTIQPGVWTYVTVNRDFKEAKLSVNGEPFVEGKAPGAS-RTMTLNTPLYIGGVDRR 3038

Query: 520  HVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANIMDCSDLE------------- 566
             +  +    V   F GCIS ++V  + +D++ SA+DSANI DCS                
Sbjct: 3039 KIVVNKKAGVDWSFRGCISELEVSSNNVDILRSAIDSANIEDCSTTHPNQTVFQTTVTTP 3098

Query: 567  --SSPVCAP-KPCQN----YGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCK 619
              + P   P  PC +    +G+C  ++  +  Y+C+C  GY G +CE     C     C+
Sbjct: 3099 ASTQPPTTPYNPCSSNPCVHGVCQSSNAYD--YSCTCEYGYVGRNCENVLKQCELLTPCR 3156

Query: 620  NGGMCKVTPDSYECLCSLGYAPPNCAKRVSIGSEVHFLGEGYVELKKELI--EERRNEET 677
            NGG C     SY+C C LGY   NC K   I  +V F G+G++EL + ++  EE RNE  
Sbjct: 3157 NGGTCTNLHGSYKCDCRLGYNGQNCEKLAEITYDVAFRGDGWLELDRSVMTHEEERNE-V 3215

Query: 678  IAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKKPV 737
            +  +  T+  N L++W+GQ +  +    ++IAVAVV+GY+EY Y+LG G   I+ + + V
Sbjct: 3216 LGLEISTNKSNGLIMWHGQ-TPNDLTPDDYIAVAVVDGYVEYQYNLGSGPAVIRVTTQRV 3274

Query: 738  NDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPNMDLMTGGRY 797
            +DG +H + + R    GS+E++      G S G Q ++ TRG++YLGG P+   MT GRY
Sbjct: 3275 DDGERHRIILKRQGSDGSIELNGEHTESGVSDGLQQMLGTRGSVYLGGVPDY-AMTYGRY 3333

Query: 798  VHPMSGLMMNIHIQNKHISNIGSSASSGLHVMPWIR 833
                SG +  + +Q+    +IG  A  G++V P  R
Sbjct: 3334 HDGFSGCIYTLEVQDSGAIDIGEKAIRGINVSPCTR 3369

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307169661|gb|EFN62243.1| Basement membrane-specific heparan sulfate proteoglycan core protein [Camponotus floridanus]

 Score =  271 bits (693), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 162/466 (34%), Positives = 249/466 (53%), Gaps = 36/466 (7%)

Query: 393  SYLALPTLTDAHLHFSIELSFKPTDY-NGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVF 451
            +YLA  T   A     + +SF PTD  +G++MY   ++    +G GDF +  ++D +  F
Sbjct: 2856 AYLAYET-PKALRRLKVTMSFNPTDSGDGILMYCSQND----EGLGDFAALIIKDKHIEF 2910

Query: 452  RFDVG--LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRT 509
            RFD+G  +  +RS   + P  W  VT+ +DFKE KLSV GEP +   +PG   + + L T
Sbjct: 2911 RFDIGSGMATIRSPHAVQPGIWTYVTVNRDFKEAKLSVNGEPFVETKSPGAS-RTMMLNT 2969

Query: 510  PLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANIMDCS------ 563
            PLY+GG +   +T +  V V   F GCIS +++L   LD++ S++D+ANI +CS      
Sbjct: 2970 PLYIGGVDRRRITINKDVGVDRSFRGCISALEILSVSLDVLKSSIDAANIENCSMSHVNQ 3029

Query: 564  -----------DLESSPV-----CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEK 607
                            P+     CA  PC  +GIC   +  +  Y+C+C  GY+G +CE 
Sbjct: 3030 TIMHTTMTTLAPSTQPPITLYDPCAWNPCI-HGICQILNMHD--YSCTCAYGYAGRNCEN 3086

Query: 608  ENNMCMKGDVCKNGGMCKVTPDSYECLCSLGYAPPNCAKRVSIGSEVHFLGEGYVELKKE 667
                C     C+N G C     SY+C C LGY   NC     I  +V F G+G++EL + 
Sbjct: 3087 VLKQCELFTPCRNEGSCTDLHGSYKCDCRLGYNGQNCENLAEITYDVAFKGDGWLELDRS 3146

Query: 668  LIEERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGV 727
            ++      E I  +  T+  N L++W+GQ +  +    ++IAVAVV+GY+EY Y+LG G 
Sbjct: 3147 IMMHEEEREVIGLEISTNKSNGLIMWHGQ-TLNDLTPDDYIAVAVVDGYVEYQYNLGSGP 3205

Query: 728  VTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTP 787
              I+ + + V+DG +H + + R    GS+E++      G S G Q ++N RG++YLGG P
Sbjct: 3206 AVIRVTAQRVDDGERHRIILKRQGNDGSIELNGEHTESGVSDGLQQILNARGSVYLGGLP 3265

Query: 788  NMDLMTGGRYVHPMSGLMMNIHIQNKHISNIGSSASSGLHVMPWIR 833
            +   MT GRY    SG +  + +Q+    +IG  A  G++V P  R
Sbjct: 3266 DYK-MTYGRYHDGFSGCIYTLEVQDSGAIDIGEKAIRGINVSPCTR 3310

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380020744|ref|XP_003694239.1| PREDICTED: pikachurin-like [Apis florea]

 Score =  267 bits (682), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 157/424 (37%), Positives = 236/424 (55%), Gaps = 28/424 (6%)

Query: 431 KSYKGKGDFVSFGLEDGYPVFRFDVGL--VVLRSKVTLVPHEWVVVTIIKDFKEGKLSVG 488
           +S +G GDFV+  +++    FR+D+G    ++ S   L P  W  V+I +DFKEG L+V 
Sbjct: 5   QSDEGLGDFVALVIKEKRVEFRYDIGSGPAIITSNHILQPGVWTHVSINRDFKEGNLTVN 64

Query: 489 GEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELD 548
           GEP I+G +PG   +++ L TPLY+GG +   +T + +  V + F GCIS + V    +D
Sbjct: 65  GEPTIIGKSPGSD-RIMTLNTPLYIGGVDRRRITINKNAGVNKTFRGCISDLGVSSVNVD 123

Query: 549 LINSAVDSANIMDCSDLESSPV------------------CAPKPCQNYGICYPTDTSER 590
           ++ SA+DSANI DC+ L  + +                  CA  PC  +GIC  TD+ + 
Sbjct: 124 ILKSAIDSANIDDCNVLHPNQIKITTVITTTSSTTTPYNPCASNPCI-HGICQNTDSYD- 181

Query: 591 GYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDSYECLCSLGYAPPNCAKRVSI 650
            Y+C+C  GY G +CE     C     C+NGG C     SY+C C LGY   NC K   I
Sbjct: 182 -YSCTCEYGYVGRNCENILKQCELLLPCRNGGTCTDLHGSYKCDCQLGYNGQNCEKLAEI 240

Query: 651 GSEVHFLGEGYVELKKELIEERRNEETIAFDFVTDDKNALLLWNGQ-PSYKNGIGREFIA 709
             +V F G+G++EL K ++      E + F+  T+    L++W+GQ PS  N     ++A
Sbjct: 241 TYDVAFRGDGWLELDKNVMIHEEEREVLGFEISTNKTRGLIMWHGQIPSNLN--PDHYMA 298

Query: 710 VAVVNGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESP 769
           +AVV+GY+EY YDLG G V I+ + + V+DG +H + + R    GS+E++   +    S 
Sbjct: 299 LAVVDGYVEYQYDLGTGPVVIRVTAQKVDDGERHRIILKRQGSDGSIELNGEHMESSTSY 358

Query: 770 GSQDVINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNIHIQNKHISNIGSSASSGLHVM 829
           G+Q  +NTRGN+YLGG P+   MT G+Y    SG +  + +Q+    +IG  A  G +V 
Sbjct: 359 GTQQDLNTRGNVYLGGVPDY-AMTYGKYQEGFSGCIYTMEVQDSGAIDIGDKAIRGKNVS 417

Query: 830 PWIR 833
           P  R
Sbjct: 418 PCTR 421

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332025352|gb|EGI65519.1| Basement membrane-specific heparan sulfate proteoglycan core protein [Acromyrmex echinatior]

 Score =  266 bits (680), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 155/455 (34%), Positives = 245/455 (53%), Gaps = 35/455 (7%)

Query: 403  AHLHFSIELSFKPTDY-NGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVG--LVV 459
            A     + +SF P D  +G++MY   ++    +G GDF +  ++D +  FRFD+G  +  
Sbjct: 2863 ALRRLKVAMSFNPVDSGDGILMYCSQND----EGLGDFAALVIKDRHVEFRFDIGSGIAA 2918

Query: 460  LRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIY 519
            ++S   + P  W  VT+ +DFK+ KLSV GEP + G + G   + +NL TPLY+GG +  
Sbjct: 2919 IKSPHPVQPGVWAHVTVNRDFKDAKLSVNGEPFVEGKSLG-AARTMNLNTPLYIGGVDHR 2977

Query: 520  HVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANIMDCSDLE----------SSP 569
             +T + +V V   F GCIS ++V    LD++ S++D+ANI DCS+            ++P
Sbjct: 2978 RITINRNVGVDRSFRGCISELEVSSVSLDIMKSSIDAANIEDCSEPHPNQTMIHTTITTP 3037

Query: 570  V-----------CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVC 618
                        C+  PC  +G C   +     Y+C+C  GY+G +CEK    C     C
Sbjct: 3038 ASTQPPTTLYYPCSSNPCI-HGQCQNLNDD---YSCTCEYGYAGRNCEKMQKQCEFLTPC 3093

Query: 619  KNGGMCKVTPDSYECLCSLGYAPPNCAKRVSIGSEVHFLGEGYVELKKELIEERRNEETI 678
            +N G C    DSY+C C LGY   NC K   I  +V F G+G++EL + ++      E  
Sbjct: 3094 RNSGTCTDLHDSYKCDCRLGYNGQNCEKLAEITYDVAFKGDGWLELDRSVMMHEEEREVF 3153

Query: 679  AFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKKPVN 738
              +  T+    L++W+GQ +  +    ++IAVAVV+GY+EY Y+LG G   I+ + + V+
Sbjct: 3154 GLEISTNKSYGLIMWHGQ-TPNDLTPDDYIAVAVVDGYVEYQYNLGSGPAVIRITAQRVD 3212

Query: 739  DGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPNMDLMTGGRYV 798
            DG +H + + R    GS+E++      G S G Q +++ RGN+YLGG P+   MT G+Y 
Sbjct: 3213 DGERHRIILKRQRSDGSIELNGEHTESGVSDGLQQILDARGNVYLGGLPDY-AMTYGKYH 3271

Query: 799  HPMSGLMMNIHIQNKHISNIGSSASSGLHVMPWIR 833
               SG +  + +Q+    +IG  A  G++V P  R
Sbjct: 3272 DGFSGCIYTLEVQDSGAIDIGEKAIKGVNVSPCTR 3306

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328783871|ref|XP_003250356.1| PREDICTED: pikachurin-like [Apis mellifera]

 Score =  263 bits (672), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 154/424 (36%), Positives = 236/424 (55%), Gaps = 28/424 (6%)

Query: 431 KSYKGKGDFVSFGLEDGYPVFRFDVGL--VVLRSKVTLVPHEWVVVTIIKDFKEGKLSVG 488
           +S +G GDFV+  +++    FR+D+G    ++ S   L P  W  V+I +DFKEG L+V 
Sbjct: 5   QSDEGLGDFVALIIKEKRVEFRYDIGSGPAIITSNHILQPGVWTHVSINRDFKEGNLTVN 64

Query: 489 GEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELD 548
           GEP ++G +PG   +++ L TPLY+GG +   +T + +  V + F GCIS + V    +D
Sbjct: 65  GEPTVIGKSPGSD-RIMTLNTPLYIGGIDRRKITINKNAGVNKTFRGCISDLGVSSVNVD 123

Query: 549 LINSAVDSANIMDCSDLESSPV------------------CAPKPCQNYGICYPTDTSER 590
           ++ SA+DSANI DC+ L  + +                  CA  PC  +GIC  TD+ + 
Sbjct: 124 ILKSAIDSANIDDCNVLHPNQIKITTVITTTSSTTTPYNPCASNPCI-HGICQNTDSYD- 181

Query: 591 GYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDSYECLCSLGYAPPNCAKRVSI 650
            Y+C+C  GY G +CE     C     C+NGG C     SY+C C LGY   NC K   I
Sbjct: 182 -YSCTCEYGYVGRNCENILKQCELLLPCRNGGTCTDLHGSYKCDCQLGYNGQNCEKLAEI 240

Query: 651 GSEVHFLGEGYVELKKELIEERRNEETIAFDFVTDDKNALLLWNGQ-PSYKNGIGREFIA 709
             +V F G+G++EL K ++      E + F+  T+    L++W+GQ P+  N     ++A
Sbjct: 241 TYDVAFKGDGWLELDKNVMIHEEEREVLGFEISTNKTRGLIMWHGQMPNNLN--PDHYMA 298

Query: 710 VAVVNGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESP 769
           +AVV+GY+EY YDLG G V I+ + + V+DG +H + + R    GS+E++   +    S 
Sbjct: 299 LAVVDGYVEYQYDLGTGPVVIRVTAQKVDDGERHRIILKRQGSDGSIELNGEHMESSTSY 358

Query: 770 GSQDVINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNIHIQNKHISNIGSSASSGLHVM 829
           G+Q  +NT+GN+YLGG P+   MT G+Y    SG +  + +Q+    +IG  A  G +V 
Sbjct: 359 GTQQDLNTKGNVYLGGVPDY-AMTYGKYQEGFSGCIYTMEVQDSGAIDIGDKAIRGKNVS 417

Query: 830 PWIR 833
           P  R
Sbjct: 418 PCTR 421

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350402224|ref|XP_003486411.1| PREDICTED: pikachurin-like isoform 1 [Bombus impatiens]

 Score =  258 bits (659), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 153/444 (34%), Positives = 239/444 (53%), Gaps = 31/444 (6%)

Query: 411 LSFKPTD-YNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVG--LVVLRSKVTLV 467
           ++F P D  +G++MY      +S +G GDFV+  ++D    FR+D+G  L ++RS   L 
Sbjct: 1   MNFNPLDNQDGILMYCA----QSEEGLGDFVALVVKDERVEFRYDIGSGLAIIRSNHVLQ 56

Query: 468 PHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTPSLSV 527
           P  W  V+I +DFKEG L++ GEP I G +PG   + + L T LY+GG +   +  + + 
Sbjct: 57  PGVWTHVSINRDFKEGNLTINGEPTIGGKSPGTA-RTMTLNTLLYIGGVDRRRIIVNRNA 115

Query: 528 EVTEGFHGCISTIDVLGSELDLINSAVDSANIMDCSDLESSPV----------------- 570
            V   F GCIS + V    +D++ SA+DS NI DC+ L  +                   
Sbjct: 116 GVDRTFRGCISDLGVSSMNVDILKSALDSVNIDDCNVLHPNQTKLTTVITIPPSTTTPYD 175

Query: 571 -CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPD 629
            CA  PC  +G+C  TD+ +  Y+C+C  GY G +CE     C     C+NGG C     
Sbjct: 176 PCASNPCI-HGMCQNTDSYD--YSCTCEYGYVGRNCENILKQCELLLPCRNGGTCTDLHG 232

Query: 630 SYECLCSLGYAPPNCAKRVSIGSEVHFLGEGYVELKKELIEERRNEETIAFDFVTDDKNA 689
           SY+C C LGY   NC K   +  +V F G+G++EL K ++      E + F+  T+    
Sbjct: 233 SYKCDCRLGYNGQNCEKLAEVTYDVAFRGDGWLELDKSVMAHEEEREVLGFEISTNKTKG 292

Query: 690 LLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVTR 749
           L++W+GQ      +   ++A+AVV+GY+EY Y+LG G V I+ + + V+DG +H + + R
Sbjct: 293 LIMWHGQTPNDLNLD-HYMALAVVDGYVEYQYNLGTGPVVIRVTAQKVDDGERHRIILKR 351

Query: 750 INKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNIH 809
               GS+E++   +    S G+Q  +N RG++YLGG P+   MT G+Y    SG +  + 
Sbjct: 352 QGSDGSIELNGEHMESSASYGTQQDLNARGSVYLGGVPDY-AMTYGKYQEGFSGCIYTME 410

Query: 810 IQNKHISNIGSSASSGLHVMPWIR 833
           +Q+    +IG  +  G +V P  R
Sbjct: 411 VQDSGAIDIGEKSIRGKNVSPCTR 434

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340729482|ref|XP_003403030.1| PREDICTED: pikachurin-like [Bombus terrestris]

 Score =  257 bits (657), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 152/441 (34%), Positives = 238/441 (53%), Gaps = 31/441 (7%)

Query: 411 LSFKPTD-YNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVG--LVVLRSKVTLV 467
           ++F P D  +G++MY      +S +G GDFV+  ++D    FR+D+G  L ++RS   L 
Sbjct: 1   MNFNPLDNQDGILMYCA----QSEEGLGDFVALVVKDERVEFRYDIGSGLAIIRSNHVLQ 56

Query: 468 PHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTPSLSV 527
           P  W  V+I +DFKEG L++ GEP I G +PG   + + L T LY+GG +   +  + + 
Sbjct: 57  PGVWTHVSINRDFKEGNLTINGEPTIGGKSPGTA-RTMTLNTLLYIGGVDRRRIIVNRNA 115

Query: 528 EVTEGFHGCISTIDVLGSELDLINSAVDSANIMDCSDLESSPV----------------- 570
            V   F GCIS + V    +D++ SA+DS NI DC+ L  +                   
Sbjct: 116 GVNRTFRGCISDLGVSSMNVDILKSALDSVNIDDCNVLHPNQTKLTTVITIPPSTTTPYD 175

Query: 571 -CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPD 629
            CA  PC  +G+C  TD+ +  Y+C+C  GY G +CE     C     C+NGG C     
Sbjct: 176 PCASNPCI-HGMCQNTDSYD--YSCTCEYGYVGRNCENILKQCELLLPCRNGGTCTDLHG 232

Query: 630 SYECLCSLGYAPPNCAKRVSIGSEVHFLGEGYVELKKELIEERRNEETIAFDFVTDDKNA 689
           SY+C C LGY   NC K   +  +V F G+G++EL K ++      E + F+  T+    
Sbjct: 233 SYKCDCRLGYNGQNCEKLAEVTYDVAFRGDGWLELDKSVMTHEEEREVLGFEISTNKTKG 292

Query: 690 LLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVTR 749
           L++W+GQ      +   ++A+AVV+GY+EY Y+LG G V I+ + + V+DG +H + + R
Sbjct: 293 LIMWHGQTPNDLNL-DHYMALAVVDGYVEYQYNLGTGPVVIRVTAQKVDDGERHRIILKR 351

Query: 750 INKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNIH 809
               GS+E++   +    S G+Q  +N RG++YLGG P+   MT G+Y    SG +  + 
Sbjct: 352 QGSDGSIELNGEHMESSASYGTQQDLNARGSVYLGGVPDY-AMTYGKYQEGFSGCIYTME 410

Query: 810 IQNKHISNIGSSASSGLHVMP 830
           +Q+    +IG  +  G +V P
Sbjct: 411 VQDSGAIDIGEKSIRGKNVSP 431

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	834
FB|FBgn0261451	4629	trol "terribly reduced optic l	0.406	0.073	0.322	3.1e-49
ZFIN|ZDB-GENE-080807-4	3422	hspg2 "heparan sulfate proteog	0.5	0.121	0.351	3.8e-75
UNIPROTKB|F1MER7	4374	HSPG2 "Uncharacterized protein	0.483	0.092	0.348	1.5e-64
UNIPROTKB|P98160	4391	HSPG2 "Basement membrane-speci	0.586	0.111	0.301	2e-58
MGI|MGI:96257	3707	Hspg2 "perlecan (heparan sulfa	0.585	0.131	0.305	4.3e-56
UNIPROTKB|E1BQW4	1022	EGFLAM "Uncharacterized protei	0.252	0.206	0.302	7.6e-51
ZFIN|ZDB-GENE-030131-1033	2028	agrn "agrin" [Danio rerio (tax	0.459	0.188	0.278	2.5e-39
UNIPROTKB|F1LQ53	963	Agrn "Agrin" [Rattus norvegicu	0.494	0.427	0.315	4.7e-41
UNIPROTKB|F1NAT6	1213	HSPG2 "Uncharacterized protein	0.501	0.344	0.311	3.4e-48
UNIPROTKB|F1MSI2	2032	AGRN "Uncharacterized protein"	0.461	0.189	0.319	1.6e-39

FB|FBgn0261451 trol "terribly reduced optic lobes" [Drosophila melanogaster (taxid:7227)]

 Score = 492 (178.3 bits), Expect = 3.1e-49, Sum P(4) = 3.1e-49
 Identities = 116/360 (32%), Positives = 184/360 (51%)

Query:   306 APYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCKV 365
             A  G+   L C  D      Y WS R  G  L  G       L+L  ++ +DAG Y+C  
Sbjct:  3848 AKVGANADLQCGADESRQPTYRWS-RQYGQ-LQAGRSLMNEKLSLDSVQANDAGTYICTA 3905

Query:   366 SNKD-MTVEIPSILLVTDSVPLFTQKPLSYLALPTLTDAHLHFSIELSFKPTDYNGLIMY 424
                D  T + P+IL+VT ++P F Q+P SY++ PTL ++   F+ EL+F+P + +GL+++
Sbjct:  3906 QYADGETADFPNILVVTGAIPQFRQEPRSYMSFPTLPNSSFKFNFELTFRPENGDGLLLF 3965

Query:   425 TGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVG--LVVLRSKVTLVPHEWVVVTIIKDFKE 482
              G +     +G GD+++  L+D Y  FRFD G   +++R++  L  +EW  V + +  ++
Sbjct:  3966 NGQT-----RGSGDYIALSLKDRYAEFRFDFGGKPMLVRAEEPLALNEWHTVRVSRFKRD 4020

Query:   483 GKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDV 542
             G + V  +  +   T  +++  L+L   LY+GG   + + P+ +V    GF GCIS + +
Sbjct:  4021 GYIQVDEQHPVAFPTL-QQIPQLDLIEDLYIGGVPNWELLPADAVSQQVGFVGCISRLTL 4079

Query:   543 LGSELDLINSAVDSANIMDCSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSG 602
              G  ++LI  A     I DC      P CA  PCQN G+C  + T E+ Y C C  G++G
Sbjct:  4080 QGRTVELIREAKYKEGITDCR-----P-CAQGPCQNKGVCLESQT-EQAYTCICQPGWTG 4132

Query:   603 DHCEKENNMCMKGDVCKNGGMCKVTPDSYECLCSLGYAPPNCAKRVSIGSE-VHFLGEGY 661
               C  E   C  G VC   G C+ T +  ECLC L  +   C     +    ++F G  +
Sbjct:  4133 RDCAIEGTQCTPG-VC-GAGRCENTENDMECLCPLNRSGDRCQYNEILNEHSLNFKGNSF 4190

GO:0005578 "proteinaceous extracellular matrix" evidence=NAS

GO:0005604 "basement membrane" evidence=ISS

GO:0055059 "asymmetric neuroblast division" evidence=NAS

GO:0045199 "maintenance of epithelial cell apical/basal polarity" evidence=IMP

GO:0005811 "lipid particle" evidence=IDA

GO:0072347 "response to anesthetic" evidence=IMP

ZFIN|ZDB-GENE-080807-4 hspg2 "heparan sulfate proteoglycan 2" [Danio rerio (taxid:7955)]

 Score = 637 (229.3 bits), Expect = 3.8e-75, Sum P(4) = 3.8e-75
 Identities = 158/449 (35%), Positives = 230/449 (51%)

Query:   383 SVPLFTQKPLSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSF 442
             + PLF  +  SY+A P LT+ H    IE+ FKP D +GL+ ++G   MK      DFV+ 
Sbjct:  2959 TTPLFDGED-SYIAYPPLTNIHNDLRIEMEFKPMDPDGLMFFSGGKKMKVE----DFVAV 3013

Query:   443 GLEDGYPVFRFDVGL--VVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGE 500
              + +G+  FR+++G    VLRS+  +   +W  V   +  K+G L+V     I  S+PG 
Sbjct:  3014 SMVNGHVEFRYELGTGQAVLRSQEPVSLDQWHRVVAERLNKDGSLTVDHAKEITRSSPG- 3072

Query:   501 KLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANIM 560
             K Q LN+ TP+YLGG     + P     V+  F GCI  + + G ++DL  S  +S  I 
Sbjct:  3073 KAQGLNIHTPMYLGGVPSMDILPK-PANVSMLFDGCIGEVFINGKKVDLSYSFTESRAIS 3131

Query:   561 DCSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKN 620
              C+D   SP C  +PC + G C  T  +E  Y C C  GY GD CE     C     C+N
Sbjct:  3132 QCND--DSP-CDRRPCLHAGTCMAT--AEYEYQCFCAEGYEGDRCEIVKESCRHSSQCQN 3186

Query:   621 GGMCK----VTPDSYECL-CSLG----YAPPNCAKRVSIGSE------VHFLGEGYVELK 665
             GG C     V P  Y    C  G    ++    +   S G++       +F   GY+ L 
Sbjct:  3187 GGSCVNNHCVCPAGYSGRHCEKGQESSFSEAMWSLEGSGGNDSPIEYSAYFHDNGYLALP 3246

Query:   666 KELIEERRNE--ETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDL 723
             K +      +  ETI  +  T  K+ L+LW G      G G++FI++ + NG+L +SY L
Sbjct:  3247 KPMFPRSAPDSPETIELEINTASKDGLILWQGVELGDQGKGKDFISLGLQNGHLVFSYQL 3306

Query:   724 GDGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYL 783
             G G   I  S +PVND   H +   R  K G L++D   V +G+S G   ++NT+GNIYL
Sbjct:  3307 GSGEAQI-VSGEPVNDRQWHKITAVRTGKHGYLQIDGGSVQRGQSQGKSIMVNTKGNIYL 3365

Query:   784 GGTPNMDLMTGGRYVHPMSGLMMNIHIQN 812
             GG P+M  +TGG+Y   M+G + N+ + N
Sbjct:  3366 GGAPDMQALTGGKYSSGMTGCVKNLSLMN 3394

GO:0007519 "skeletal muscle tissue development" evidence=IMP

GO:0001525 "angiogenesis" evidence=IMP

UNIPROTKB|F1MER7 HSPG2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 601 (216.6 bits), Expect = 1.5e-64, Sum P(4) = 1.5e-64
 Identities = 152/436 (34%), Positives = 231/436 (52%)

Query:   393 SYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFR 452
             SYLALP LT+ H    +++ FKP   +G+++++G    KS   + DFVS  +  G+  FR
Sbjct:  3920 SYLALPALTNTHHELRLDVEFKPLAPDGVLLFSGG---KSGPVE-DFVSLAMVGGHLEFR 3975

Query:   453 FDVG--LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSV-GGEPLIVGSTPGEKLQVLNLRT 509
             +++G  L VLRS   L    W  V+  +  K+G L V GG P ++ S+PG K Q LNL T
Sbjct:  3976 YELGSGLAVLRSAEPLALGRWHHVSAERLNKDGSLQVNGGRP-VLRSSPG-KSQGLNLHT 4033

Query:   510 PLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANIMDCSDLESSP 569
              LYLGG       P  +  V+  FHGC+  + V G  LDL  S + S  +  C D  SSP
Sbjct:  4034 LLYLGGVEPAVQLPP-ATNVSAHFHGCVGEVSVNGKRLDLTYSFLGSQGVGQCYD--SSP 4090

Query:   570 VCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVT-- 627
              C  +PC++   C P    E  + C C  G+ GD CE E N C   + C +GG C+ T  
Sbjct:  4091 -CERQPCRHGATCMPAGEYE--FQCLCRDGFKGDLCEHEENPCQLHEPCLHGGTCQGTHC 4147

Query:   628 --PDSYE---CLCSL--GYAPPNCAKRVSIGSEV------HFLGEGYVELKKELIEERRN 674
               P  +    C  S   G    +     S G++       +F   G++ L   +      
Sbjct:  4148 LCPPGFSGPRCQHSSAHGLVESDWHLEGSGGNDAPGQYGAYFYDNGFLALPGRIFSRSLP 4207

Query:   675 E--ETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKF 732
             E  ETI  +  T   + LL+W G+ + ++G G++FI++ + +G+L +SY LG G   +  
Sbjct:  4208 EVPETIELEVRTSTASGLLVWQGEETGQSGRGKDFISLGLQDGHLVFSYQLGSGEARL-V 4266

Query:   733 SKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPNMDLM 792
             S+ P+NDG  H V   R  + GS++VD   +  G+SPG    +NT+G+IY+GG PN+ ++
Sbjct:  4267 SEDPINDGEWHRVTALREGQRGSIQVDGEELVSGQSPGPNVAVNTKGSIYVGGAPNVAVL 4326

Query:   793 TGGRYVHPMSGLMMNI 808
             TGGR+   ++G + N+
Sbjct:  4327 TGGRFSSGITGCIKNL 4342

GO:0060351 "cartilage development involved in endochondral bone morphogenesis" evidence=IEA

GO:0048738 "cardiac muscle tissue development" evidence=IEA

GO:0048704 "embryonic skeletal system morphogenesis" evidence=IEA

GO:0030198 "extracellular matrix organization" evidence=IEA

GO:0008104 "protein localization" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0005605 "basal lamina" evidence=IEA

GO:0002062 "chondrocyte differentiation" evidence=IEA

GO:0001958 "endochondral ossification" evidence=IEA

UNIPROTKB|P98160 HSPG2 "Basement membrane-specific heparan sulfate proteoglycan core protein" [Homo sapiens (taxid:9606)]

 Score = 597 (215.2 bits), Expect = 2.0e-58, Sum P(3) = 2.0e-58
 Identities = 157/521 (30%), Positives = 249/521 (47%)

Query:   307 PYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCKVS 366
             P GS     C        + +WSK      LP  +    N L L  ++  DAG YVC  +
Sbjct:  3587 PAGSAAVFPCIASGYPTPDISWSKLDGS--LPPDSRLENNMLMLPSVRPQDAGTYVCTAT 3644

Query:   367 NKDMTVEIPSILLVTDSV-PLFTQKPLSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYT 425
             N+   V+  + L V + V P FTQ P S+L LPT+ DA+  F I+++F+P   +G+++Y 
Sbjct:  3645 NRQGKVKAFAHLQVPERVVPYFTQTPYSFLPLPTIKDAYRKFEIKITFRPDSADGMLLYN 3704

Query:   426 GDSNMKSY-----KGKGDFVSFGLEDGYPVFRFDVG--LVVLRSKVTLVPHEWVVVTIIK 478
             G   +          + DF+SFGL  G P FRFD G  +  +R    L    +  VT+++
Sbjct:  3705 GQKRVPGSPTNLANRQPDFISFGLVGGRPEFRFDAGSGMATIRHPTPLALGHFHTVTLLR 3764

Query:   479 DFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCIS 538
                +G L VG    + G++ G K Q L+L   LYLGGY  Y   P   +  + GF GC+ 
Sbjct:  3765 SLTQGSLIVGDLAPVNGTSQG-KFQGLDLNEELYLGGYPDYGAIPKAGL--SSGFIGCVR 3821

Query:   539 TIDVLGSELDLINSAVDSANIMDCSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLT 598
              + + G E+   +  + +  I  C      P C  +PCQN G C+ +++S   Y C C  
Sbjct:  3822 ELRIQGEEIVFHDLNLTAHGISHC------PTCRDRPCQNGGQCHDSESSS--YVCVCPA 3873

Query:   599 GYSGDHCEKENNMCMKGDVCKNGGMCKVTPDS--YECLCSLGYAPPNCAKRVSIGSEVHF 656
             G++G  CE    +    + C     C   PD   Y C C LG +   C + V++ +    
Sbjct:  3874 GFTGSRCEHSQALHCHPEACGPDATCVNRPDGRGYTCRCHLGRSGLRCEEGVTVTTP-SL 3932

Query:   657 LGEG-YVELKKELIEERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNG 715
              G G Y+ L    +    +E  +  +F     + +LL++G    K+G   +F+++A+V G
Sbjct:  3933 SGAGSYLALPA--LTNTHHELRLDVEFKPLAPDGVLLFSGG---KSGPVEDFVSLAMVGG 3987

Query:   716 YLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVI 775
             +LE+ Y+LG G+  ++ S +P+  G  H V+  R+NK GSL V+        SPG    +
Sbjct:  3988 HLEFRYELGSGLAVLR-SAEPLALGRWHRVSAERLNKDGSLRVNGGRPVLRSSPGKSQGL 4046

Query:   776 NTRGNIYLGGT-PNMDLMTGGRYVHPMSGLMMNIHIQNKHI 815
             N    +YLGG  P++ L           G +  + +  K +
Sbjct:  4047 NLHTLLYLGGVEPSVPLSPATNMSAHFRGCVGEVSVNGKRL 4087

GO:0001525 "angiogenesis" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0001958 "endochondral ossification" evidence=IEA

GO:0002062 "chondrocyte differentiation" evidence=IEA

GO:0005605 "basal lamina" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0008104 "protein localization" evidence=IEA

GO:0030198 "extracellular matrix organization" evidence=IEA

GO:0048704 "embryonic skeletal system morphogenesis" evidence=IEA

GO:0048738 "cardiac muscle tissue development" evidence=IEA

GO:0060351 "cartilage development involved in endochondral bone morphogenesis" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0070062 "extracellular vesicular exosome" evidence=IDA

GO:0005576 "extracellular region" evidence=TAS

GO:0005796 "Golgi lumen" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0005975 "carbohydrate metabolic process" evidence=TAS

GO:0006024 "glycosaminoglycan biosynthetic process" evidence=TAS

GO:0006027 "glycosaminoglycan catabolic process" evidence=TAS

GO:0006629 "lipid metabolic process" evidence=TAS

GO:0030203 "glycosaminoglycan metabolic process" evidence=TAS

GO:0030204 "chondroitin sulfate metabolic process" evidence=TAS

GO:0042157 "lipoprotein metabolic process" evidence=TAS

GO:0043202 "lysosomal lumen" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0005615 "extracellular space" evidence=IDA

GO:0031012 "extracellular matrix" evidence=ISS;IDA

MGI|MGI:96257 Hspg2 "perlecan (heparan sulfate proteoglycan 2)" [Mus musculus (taxid:10090)]

 Score = 584 (210.6 bits), Expect = 4.3e-56, Sum P(3) = 4.3e-56
 Identities = 158/518 (30%), Positives = 246/518 (47%)

Query:   307 PYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCKVS 366
             P GS     C          TWSK  +G  LP  +    N L L  ++  DAG YVC  +
Sbjct:  2908 PAGSAAVFPCMASGYPTPAITWSK-VDGD-LPPDSRLENNMLMLPSVRPEDAGTYVCTAT 2965

Query:   367 NKDMTVEIPSILLVTDSV-PLFTQKPLSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYT 425
             N+   V+  + L V + V P FTQ P S+L LPT+ DA+  F I+++F+P   +G+++Y 
Sbjct:  2966 NRQGKVKAFAYLQVPERVIPYFTQTPYSFLPLPTIKDAYRKFEIKITFRPDSADGMLLYN 3025

Query:   426 GDSNMKSYKG--KGDFVSFGLEDGYPVFRFDVG--LVVLRSKVTLVPHEWVVVTIIKDFK 481
             G     +     + DF+SFGL  G P FRFD G  +  +R    L   ++  VT+++   
Sbjct:  3026 GQKRSPTNLANRQPDFISFGLVGGRPEFRFDAGSGMATIRHPTPLALGQFHTVTLLRSLT 3085

Query:   482 EGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTID 541
             +G L VG    + G++ G K Q L+L   LYLGGY  Y   P   +  + GF GC+  + 
Sbjct:  3086 QGSLIVGNLAPVNGTSQG-KFQGLDLNEELYLGGYPDYGAIPKAGL--SSGFVGCVRELR 3142

Query:   542 VLGSELDLINSAVDSANIMDCSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYS 601
             + G E+   +  + +  I  C      P C  +PCQN G C  +++S   Y C C  G++
Sbjct:  3143 IQGEEIVFHDVNLTTHGISHC------PTCQDRPCQNGGQCQDSESSS--YTCVCPAGFT 3194

Query:   602 GDHCEKENNMCMKGDVCKNGGMCKVTPDS--YECLCSLGYAPPNCAKRVSIGSEVHFLGE 659
                       C           C   PD   Y C C LG +   C + V++ +     G 
Sbjct:  3195 AA-AVNIRKPCTATPSLWADATCVNRPDGRGYTCRCHLGRSGVRCEEGVTVTTP-SMSGA 3252

Query:   660 G-YVELKKELIEERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLE 718
             G Y+ L    +    +E  +  +F   + N +LL++G    K+G   +F+++A+V G+LE
Sbjct:  3253 GSYLALPA--LTNTHHELRLDVEFKPLEPNGILLFSGG---KSGPVEDFVSLAMVGGHLE 3307

Query:   719 YSYDLGDGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTR 778
             + Y+LG G+  ++ S +P+  G  H V+  R+NK GSL VD        SPG    +N  
Sbjct:  3308 FRYELGSGLAVLR-SHEPLALGRWHRVSAERLNKDGSLRVDGGRPVLRSSPGKSQGLNLH 3366

Query:   779 GNIYLGGT-PNMDLMTGGRYVHPMSGLMMNIHIQNKHI 815
               +YLGG  P++ L           G +  + +  K +
Sbjct:  3367 TLLYLGGVEPSVQLSPATNMSAHFHGCVGEVSVNGKRL 3404

GO:0001525 "angiogenesis" evidence=IEA

GO:0001958 "endochondral ossification" evidence=IMP

GO:0002062 "chondrocyte differentiation" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005576 "extracellular region" evidence=IEA

GO:0005578 "proteinaceous extracellular matrix" evidence=IDA

GO:0005604 "basement membrane" evidence=IDA

GO:0005605 "basal lamina" evidence=IDA

GO:0005615 "extracellular space" evidence=ISO

GO:0007420 "brain development" evidence=IMP

GO:0008022 "protein C-terminus binding" evidence=ISO

GO:0008104 "protein localization" evidence=IMP

GO:0030198 "extracellular matrix organization" evidence=IMP

GO:0031012 "extracellular matrix" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0048704 "embryonic skeletal system morphogenesis" evidence=IMP

GO:0048738 "cardiac muscle tissue development" evidence=IMP

GO:0060351 "cartilage development involved in endochondral bone morphogenesis" evidence=IMP

GO:0070062 "extracellular vesicular exosome" evidence=ISO

UNIPROTKB|E1BQW4 EGFLAM "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 271 (100.5 bits), Expect = 7.6e-51, Sum P(3) = 7.6e-51
 Identities = 68/225 (30%), Positives = 110/225 (48%)

Query:   612 CMKGDVCKNGGMCKVTPDSYECLCSLGYAPPNCAKRVSIGSEV-HFLGEGYV-----ELK 665
             C+ G  C NGG C    DSYEC C LG+   +C K ++   E+  F+G  Y+     ++ 
Sbjct:   798 CV-GSPCANGGSCVPKKDSYECDCPLGFDGQHCQKAITEAIEIPQFIGRSYLIYDNPDIL 856

Query:   666 KELIEERRNEETIAFDFVTDDKNALLLWNGQ-PSYKNGIGREFIAVAVVNGYLEYSYDLG 724
             K L     +   +   F T  K  LL+W G  P   N    +FI++ +  G L +SY+LG
Sbjct:   857 KRLNRVSGSRTNVFMRFKTTMKEGLLMWRGDSPMRPNS---DFISLGLQEGALLFSYNLG 913

Query:   725 DGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLG 784
              G+ +I  +    +DG  H V   R  + G + VD      G+SPG    +N  G++Y+G
Sbjct:   914 SGIASIVVNGS-FSDGRWHRVKAVRDGQSGKVTVDDYGARTGKSPGKMRQLNINGDLYVG 972

Query:   785 GTPNMDLMTGGRYVHPMSGLMMNIHIQNK-HISNIGSSASSGLHV 828
             G   + L T  +Y+  + G + ++ +    HIS +   A+ G ++
Sbjct:   973 GMKEIALHTNRQYLRGLVGCISHLTLSTDYHISLV-EDAADGKNI 1016

GO:0005539 "glycosaminoglycan binding" evidence=IEA

GO:0005604 "basement membrane" evidence=IEA

GO:0005614 "interstitial matrix" evidence=IEA

GO:0010811 "positive regulation of cell-substrate adhesion" evidence=IEA

GO:0019800 "peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan" evidence=IEA

GO:0030198 "extracellular matrix organization" evidence=IEA

ZFIN|ZDB-GENE-030131-1033 agrn "agrin" [Danio rerio (taxid:7955)]

 Score = 432 (157.1 bits), Expect = 2.5e-39, Sum P(2) = 2.5e-39
 Identities = 116/417 (27%), Positives = 209/417 (50%)

Query:   384 VPLFTQKPLSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFG 443
             +P F  K  SY+A  T+   H    I + F+ ++  G+++Y G       K K DF+S  
Sbjct:  1362 IPSFGGK--SYMAFQTMKAYHT-VRIAMEFRASEMTGILLYDGQ------KSKKDFLSLT 1412

Query:   444 LEDGYPVFRFDVG--LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEK 501
             L +GY   RF+ G     + SKV + P  W  + ++++ +   LSV  EP + G +P   
Sbjct:  1413 LIEGYVELRFNTGSGTASVISKVLVKPGRWHQLVVVRNRRNAMLSVDNEPSVEGQSP-PG 1471

Query:   502 LQVLNLRTPLYLGGYNIYHVTPSLS--VEVTEGFHGCISTIDVLGSELDLIN---SAVDS 556
                LNL T L++GG  +  ++  +     V+ G  GCI  +DV     +L     S +  
Sbjct:  1472 TDGLNLDTDLFIGGV-LDDMSADVKERTSVSAGLVGCIRMLDVNNLVYNLQENGGSVLYG 1530

Query:   557 ANIMDCSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGD 616
             + I +C +   +P C P PC+N   C   +     ++C C+ G+SG  C   +N C   +
Sbjct:  1531 SAIGECGN---NP-CLPNPCKNGASCQVKEAEI--FHCKCVNGFSGPTCADAHNPC-DPN 1583

Query:   617 VCKNGGMCKVTPDS-YECLCSLGYAPPNCAKRVSIGSEV--HFLGEGYVELK--KELIEE 671
              C     C+V P+  Y+C C +G    +C K    G     +F G+ ++ELK      ++
Sbjct:  1584 KCHPPSRCQVLPEGGYKCECPMGREGRHCEKVSDKGGAFIPYFTGDSFLELKGLHTYNQD 1643

Query:   672 RRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIK 731
              R + ++    + +D   ++ +NGQ +  +G G +FI++++ +G LE+ YDLG G   I+
Sbjct:  1644 LRQKFSMTIVLLANDSKGMIFYNGQKT--DGKG-DFISLSLNDGILEFRYDLGKGPAVIR 1700

Query:   732 FSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPN 788
              SK+ +     ++VN+ R ++ G + ++     +GE+P     +N + ++++GG P+
Sbjct:  1701 -SKEKIKLNEWNTVNLERASRKGEISINGKDPVRGEAPNQHTDLNLKESLFVGGAPD 1756

GO:0005605 "basal lamina" evidence=IEA

GO:0043113 "receptor clustering" evidence=IEA

GO:0007213 "G-protein coupled acetylcholine receptor signaling pathway" evidence=IEA

GO:0043236 "laminin binding" evidence=IEA

GO:0007409 "axonogenesis" evidence=IMP

GO:0007417 "central nervous system development" evidence=IMP

GO:0009952 "anterior/posterior pattern specification" evidence=IMP

GO:0007422 "peripheral nervous system development" evidence=IMP

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1LQ53 Agrn "Agrin" [Rattus norvegicus (taxid:10116)]

 Score = 467 (169.5 bits), Expect = 4.7e-41, P = 4.7e-41
 Identities = 141/447 (31%), Positives = 218/447 (48%)

Query:   383 SVPLFTQKPLSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSF 442
             S+P F  K  S+LA PTL   H    + L F+  +  GL++Y G++     +GK DF++ 
Sbjct:   291 SMPAF--KGHSFLAFPTLRAYHT-LRLALEFRALETEGLLLYNGNA-----RGK-DFLAL 341

Query:   443 GLEDGYPVFRFDVGL--VVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGE 500
              L DG   FRFD G    VL S V + P  W  + + + +++G LSV GE  +VG +P  
Sbjct:   342 ALLDGRVQFRFDTGSGPAVLTSLVPVEPGRWHRLELSRHWRQGTLSVDGETPVVGESPSG 401

Query:   501 KLQVLNLRTPLYLGGYNIYHVTPSLS-VEVTEGFHGCISTIDVLGSELDLIN---SAVDS 556
                 LNL T LY+GG     V   L    V  G  GCI  +D+   +L+L +   +AV S
Sbjct:   402 T-DGLNLDTNLYVGGIPEEQVAMVLDRTSVGVGLKGCIRMLDINNQQLELSDWQRAAVQS 460

Query:   557 ANIMDCSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGD 616
             + + +C D    P C P PC    +C   +     + C C  G  G  C  E + C    
Sbjct:   461 SGVGECGD---HP-CLPNPCHGGALCQALEAGM--FLCQCPPGRFGPTCADEKSPCQPNP 514

Query:   617 VCKNGGMCKV-TPDSYECLCSLGYAPPNCAKRV-SIGSE---VHFLGEGYVELKKELIEE 671
              C     C+V +    +C C LG +   C   + + GS      F G  Y+ELK     E
Sbjct:   515 -CHGAAPCRVLSSGGAKCECPLGRSGTFCQTVLETAGSRPFLADFNGFSYLELKGLHTFE 573

Query:   672 RRNEETIAFD--FVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVT 729
             R   E +A +  F+    + LLL+NGQ +  +G G +F+++A+ N +LE+ YDLG G   
Sbjct:   574 RDLGEKMALEMVFLARGPSGLLLYNGQKT--DGKG-DFVSLALHNRHLEFCYDLGKGAAV 630

Query:   730 IKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPNM 789
             I+ SK+P+  G    V + R  + G+L+V       GESP    ++N +  +Y+GG P+ 
Sbjct:   631 IR-SKEPIALGTWVRVFLERNGRKGALQVGDGPRVLGESPVPHTMLNLKEPLYIGGAPDF 689

Query:   790 DLMTGGRYVHP-MSGLMMNIHIQNKHI 815
               +  G  V    +G++  + ++   +
Sbjct:   690 SKLARGAAVSSGFNGVIQLVSLRGHQL 716

GO:0005605 "basal lamina" evidence=IEA

GO:0007213 "G-protein coupled acetylcholine receptor signaling pathway" evidence=IEA

GO:0043113 "receptor clustering" evidence=IEA

GO:0043236 "laminin binding" evidence=IEA

UNIPROTKB|F1NAT6 HSPG2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 515 (186.3 bits), Expect = 3.4e-48, Sum P(2) = 3.4e-48
 Identities = 140/450 (31%), Positives = 214/450 (47%)

Query:   290 LYSNDAP--AFNPVSTKEAPYGSKITLTC-NNDLEAPVEYTWSKRSNGHVLPFGAFSREN 346
             L+   AP  A  P   KE   GS   L C  +    P E +WSK   G  LP G      
Sbjct:   596 LHVQAAPHIAGQP-EVKEVSVGSAAVLPCLASGFPVP-EISWSKLE-GE-LPEGTRVEGT 651

Query:   347 TLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDS-VPLFTQKPLSYLALPTLTDAHL 405
              L L  ++  DAG+Y C  SN+        +L V +  VP FTQ P S+L LPT+ DA+ 
Sbjct:   652 ALMLPAVRLEDAGVYACAASNRRGQETAFYVLKVQERLVPYFTQTPRSFLPLPTIKDAYK 711

Query:   406 HFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVG--LVVLRSK 463
              F I+++F+P   +G+++Y G    KS  G  DF+SFGL  G P FRFD G  +  +R  
Sbjct:   712 TFEIQITFRPDAADGMLLYNGQR--KS-SG-ADFISFGLVGGRPEFRFDAGSGMATIRDP 767

Query:   464 VTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTP 523
               L   ++  V + ++   G L V G+P + G++ G K Q L+L   LYLGGY  Y +  
Sbjct:   768 TPLRLGQYHTVRLFRNLTRGSLQVDGQPPVNGTSQG-KFQGLDLNEELYLGGYPDYTIVA 826

Query:   524 SLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANIMDCSDLESSPVCAPKPCQNYGICY 583
                +  + GF GC+  + +   E+      + +  + +C      P C  +PCQN GIC 
Sbjct:   827 KTGL--SRGFVGCVRQLRIQNEEVAFGELDLQAHGVSNC------PTCQDQPCQNGGICE 878

Query:   584 PTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDS--YECLCSLGYAP 641
               ++S   Y C C  G++G +CE    +    + C     C   PD   Y C C LG   
Sbjct:   879 DAESST--YICRCPQGFTGSNCEYSQALHCHPEACGPDATCISRPDGHGYSCRCHLGKMG 936

Query:   642 PNCAKRVSIGSEVHFLGEGYVELKKELIEERRNEETIAFDFVTDDKNALLLWNGQPSYKN 701
               C +  ++   V    E    +    +    +E  +  +F+    + LLL++     K 
Sbjct:   937 ERCTEGEAVS--VPSFDEAGAFISYPPLTNVHHELRVEAEFLPRAPDGLLLFSAG---KA 991

Query:   702 GIGREFIAVAVVNGYLEYSYDLGDGVVTIK 731
                 +F+A+A+V+G+LE+ Y+LG G   ++
Sbjct:   992 SPVEDFVALAMVSGHLEFHYELGSGTAVLR 1021

GO:0001958 "endochondral ossification" evidence=IEA

GO:0002062 "chondrocyte differentiation" evidence=IEA

GO:0005605 "basal lamina" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0008104 "protein localization" evidence=IEA

GO:0030198 "extracellular matrix organization" evidence=IEA

GO:0048704 "embryonic skeletal system morphogenesis" evidence=IEA

GO:0048738 "cardiac muscle tissue development" evidence=IEA

GO:0060351 "cartilage development involved in endochondral bone morphogenesis" evidence=IEA

UNIPROTKB|F1MSI2 AGRN "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 431 (156.8 bits), Expect = 1.6e-39, Sum P(2) = 1.6e-39
 Identities = 134/419 (31%), Positives = 197/419 (47%)

Query:   383 SVPLFTQKPLSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSF 442
             SVP F     S+LA PTL   H    + L F+  +  GL++Y G++     +GK DF+  
Sbjct:  1360 SVPAFGGH--SFLAFPTLRAYHT-LRLALEFRALEPQGLLLYNGNA-----RGK-DFLGL 1410

Query:   443 GLEDGYPVFRFDVGL--VVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGE 500
              L  G   FRFD G    VL S V + P  W  + + + +++G LSV GE  ++G +P  
Sbjct:  1411 VLLGGRVQFRFDTGSGPAVLTSSVPVQPGRWHHLELSRHWRQGTLSVDGETPVLGQSPSG 1470

Query:   501 KLQVLNLRTPLYLGGYNIYHVTPSLS-VEVTEGFHGCISTIDVLGSELDLIN---SAVDS 556
                 LNL T L++GG      +  L    V+ G  GCI  +DV    L+L +   SA  S
Sbjct:  1471 T-DGLNLDTDLFVGGVPEDQASTVLERTSVSIGLRGCIRLLDVNNQRLELSSWPESATRS 1529

Query:   557 ANIMDCSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGD 616
             + +  C D    P C P PC     C   +     ++C C  G  G  C  E + C    
Sbjct:  1530 SGVGKCGD---HP-CLPSPCLGGAPCQALEAGR--FHCQCPPGRFGPTCADEKDPCQPNP 1583

Query:   617 VCKNGGMCKVTPDSY-ECLCSLGYAPPNCAKRVSIGSEVHFLGE----GYVELKKELIEE 671
              C     C+V P    +C C  G     C           FL +     Y+ELK     E
Sbjct:  1584 -CHGAAPCRVLPQGEAKCECPHGREGSLCQTVSEPEDNQPFLADFSSFSYLELKGLHTFE 1642

Query:   672 RRNEETIAFD--FVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVT 729
             R   E +A +  F+    + LLL+NGQ +  +G G +F+++A+ NG LE+ YDLG G   
Sbjct:  1643 RDLGEKMALEVVFLARSPSGLLLYNGQKT--DGKG-DFVSLALHNGLLEFRYDLGKGAAV 1699

Query:   730 IKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPN 788
             I+ SK+PV  G    V++ R  + G++ V       GESP    V+N +  +++GG P+
Sbjct:  1700 IR-SKEPVALGAWTRVSLERNGRKGAMRVGDGPRVLGESPVPHTVLNLKEPLFVGGAPD 1757

GO:0043113 "receptor clustering" evidence=IEA

GO:0005605 "basal lamina" evidence=IEA

GO:0043236 "laminin binding" evidence=IEA

GO:0007213 "G-protein coupled acetylcholine receptor signaling pathway" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	834
cd00110	151	cd00110, LamG, Laminin G domain; Laminin G-like do	6e-28
cd00110	151	cd00110, LamG, Laminin G domain; Laminin G-like do	4e-27
smart00282	132	smart00282, LamG, Laminin G domain	2e-26
smart00282	132	smart00282, LamG, Laminin G domain	2e-25
pfam02210	124	pfam02210, Laminin_G_2, Laminin G domain	1e-23
pfam02210	124	pfam02210, Laminin_G_2, Laminin G domain	3e-21
pfam00054	131	pfam00054, Laminin_G_1, Laminin G domain	7e-21
pfam00054	131	pfam00054, Laminin_G_1, Laminin G domain	2e-18
cd00110	151	cd00110, LamG, Laminin G domain; Laminin G-like do	3e-08
smart00282	132	smart00282, LamG, Laminin G domain	9e-08
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	6e-07
cd00110	151	cd00110, LamG, Laminin G domain; Laminin G-like do	2e-06
smart00410	85	smart00410, IG_like, Immunoglobulin like	2e-06
smart00409	85	smart00409, IG, Immunoglobulin	2e-06
cd00054	38	cd00054, EGF_CA, Calcium-binding EGF-like domain,	4e-06
cd00054	38	cd00054, EGF_CA, Calcium-binding EGF-like domain,	7e-06
pfam00008	32	pfam00008, EGF, EGF-like domain	7e-06
cd00054	38	cd00054, EGF_CA, Calcium-binding EGF-like domain,	3e-05
smart00282	132	smart00282, LamG, Laminin G domain	4e-05
cd05754	85	cd05754, Ig3_Perlecan_like, Third immunoglobulin (	4e-05
pfam02210	124	pfam02210, Laminin_G_2, Laminin G domain	5e-05
cd00053	36	cd00053, EGF, Epidermal growth factor domain, foun	5e-05
cd00096	74	cd00096, Ig, Immunoglobulin domain	6e-05
cd05732	96	cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig	7e-05
cd04968	88	cd04968, Ig3_Contactin_like, Third Ig domain of co	2e-04
cd00053	36	cd00053, EGF, Epidermal growth factor domain, foun	4e-04
smart00179	39	smart00179, EGF_CA, Calcium-binding EGF-like domai	4e-04
smart00179	39	smart00179, EGF_CA, Calcium-binding EGF-like domai	4e-04
pfam13385	156	pfam13385, Laminin_G_3, Concanavalin A-like lectin	4e-04
cd00053	36	cd00053, EGF, Epidermal growth factor domain, foun	6e-04
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	8e-04
cd05856	82	cd05856, Ig2_FGFRL1-like, Second immunoglobulin (I	8e-04
cd05714	106	cd05714, Ig_CSPGs_LP, Immunoglobulin (Ig)-like dom	9e-04
pfam13927	74	pfam13927, Ig_3, Immunoglobulin domain	0.001
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	0.002
cd05713	100	cd05713, Ig_MOG_like, Immunoglobulin (Ig)-like dom	0.002
pfam00047	62	pfam00047, ig, Immunoglobulin domain	0.002
cd05869	97	cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-lik	0.003

>gnl|CDD|238058 cd00110, LamG, Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans

 Score =  109 bits (275), Expect = 6e-28
 Identities = 53/157 (33%), Positives = 76/157 (48%), Gaps = 8/157 (5%)

Query: 654 VHFLGEGYVELKKELIEERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVV 713
           V F G  YV L        R   +I+F F T   N LLL+ G     +  G +F+A+ + 
Sbjct: 2   VSFSGSSYVRLPTL--PAPRTRLSISFSFRTTSPNGLLLYAG-----SQNGGDFLALELE 54

Query: 714 NGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQD 773
           +G L   YDLG G + +  SK P+NDG  HSV+V R  +  +L VD   V +  SPG   
Sbjct: 55  DGRLVLRYDLGSGSLVLS-SKTPLNDGQWHSVSVERNGRSVTLSVDGERVVESGSPGGSA 113

Query: 774 VINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNIHI 810
           ++N  G +YLGG P      G        G + ++ +
Sbjct: 114 LLNLDGPLYLGGLPEDLKSPGLPVSPGFVGCIRDLKV 150

Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules. Length = 151

>gnl|CDD|238058 cd00110, LamG, Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans

 Score =  107 bits (269), Expect = 4e-27
 Identities = 59/152 (38%), Positives = 80/152 (52%), Gaps = 11/152 (7%)

Query: 393 SYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFR 452
           SY+ LPTL       SI  SF+ T  NGL++Y G       +  GDF++  LEDG  V R
Sbjct: 8   SYVRLPTLPAPRTRLSISFSFRTTSPNGLLLYAGS------QNGGDFLALELEDGRLVLR 61

Query: 453 FDVGL--VVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTP 510
           +D+G   +VL SK  L   +W  V++ ++ +   LSV GE + V S       +LNL  P
Sbjct: 62  YDLGSGSLVLSSKTPLNDGQWHSVSVERNGRSVTLSVDGERV-VESGSPGGSALLNLDGP 120

Query: 511 LYLGGYNIYHVTPSLSVEVTEGFHGCISTIDV 542
           LYLGG      +P L   V+ GF GCI  + V
Sbjct: 121 LYLGGLPEDLKSPGLP--VSPGFVGCIRDLKV 150

Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules. Length = 151

>gnl|CDD|214598 smart00282, LamG, Laminin G domain

 Score =  104 bits (262), Expect = 2e-26
 Identities = 44/137 (32%), Positives = 65/137 (47%), Gaps = 5/137 (3%)

Query: 677 TIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKKP 736
           +I+F F T   N LLL+ G     +  G +++A+ + +G L   YDLG G   +     P
Sbjct: 1   SISFSFRTTSPNGLLLYAG-----SKGGGDYLALELRDGRLVLRYDLGSGPARLTSDPTP 55

Query: 737 VNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPNMDLMTGGR 796
           +NDG  H V V R  +  +L VD      GESPG   ++N  G +YLGG P    +    
Sbjct: 56  LNDGQWHRVAVERNGRSVTLSVDGGNRVSGESPGGLTILNLDGPLYLGGLPEDLKLPPLP 115

Query: 797 YVHPMSGLMMNIHIQNK 813
                 G + N+ +  K
Sbjct: 116 VTPGFRGCIRNLKVNGK 132

Length = 132

>gnl|CDD|214598 smart00282, LamG, Laminin G domain

 Score =  101 bits (254), Expect = 2e-25
 Identities = 54/140 (38%), Positives = 72/140 (51%), Gaps = 12/140 (8%)

Query: 408 SIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVG--LVVLRSKVT 465
           SI  SF+ T  NGL++Y G       KG GD+++  L DG  V R+D+G     L S  T
Sbjct: 1   SISFSFRTTSPNGLLLYAGS------KGGGDYLALELRDGRLVLRYDLGSGPARLTSDPT 54

Query: 466 LV-PHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTPS 524
            +   +W  V + ++ +   LSV G   + G +PG  L +LNL  PLYLGG       P 
Sbjct: 55  PLNDGQWHRVAVERNGRSVTLSVDGGNRVSGESPG-GLTILNLDGPLYLGGLPEDLKLPP 113

Query: 525 LSVEVTEGFHGCISTIDVLG 544
           L   VT GF GCI  + V G
Sbjct: 114 LP--VTPGFRGCIRNLKVNG 131

Length = 132

>gnl|CDD|216930 pfam02210, Laminin_G_2, Laminin G domain

 Score = 96.7 bits (241), Expect = 1e-23
 Identities = 42/129 (32%), Positives = 62/129 (48%), Gaps = 5/129 (3%)

Query: 682 FVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKKPVNDGI 741
           F T   N LLL+ G        G +F+A+ + +G L   YDLG G   +  S K +NDG 
Sbjct: 1   FRTTQPNGLLLYAGGED-----GLDFLALELEDGRLVLRYDLGSGGSVLLLSGKKLNDGQ 55

Query: 742 KHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPNMDLMTGGRYVHPM 801
            H V+V+R  +  +L VD   V     PGS  ++N  G +YLGG P    ++        
Sbjct: 56  WHRVSVSRDGRSLTLSVDGGTVVSEALPGSSSILNLNGPLYLGGLPEDSGLSLLPVTEGF 115

Query: 802 SGLMMNIHI 810
            G + N+ +
Sbjct: 116 VGCIRNVRV 124

This family includes the Thrombospondin N-terminal-like domain, a Laminin G subfamily. Length = 124

>gnl|CDD|216930 pfam02210, Laminin_G_2, Laminin G domain

 Score = 89.8 bits (223), Expect = 3e-21
 Identities = 49/133 (36%), Positives = 67/133 (50%), Gaps = 12/133 (9%)

Query: 413 FKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVGL---VVLRSKVTLVPH 469
           F+ T  NGL++Y G  +        DF++  LEDG  V R+D+G    V+L S   L   
Sbjct: 1   FRTTQPNGLLLYAGGEDGL------DFLALELEDGRLVLRYDLGSGGSVLLLSGKKLNDG 54

Query: 470 EWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTPSLSVEV 529
           +W  V++ +D +   LSV G  ++  + PG     LNL  PLYLGG         L   V
Sbjct: 55  QWHRVSVSRDGRSLTLSVDGGTVVSEALPGSSSI-LNLNGPLYLGGLPEDSGLSLLP--V 111

Query: 530 TEGFHGCISTIDV 542
           TEGF GCI  + V
Sbjct: 112 TEGFVGCIRNVRV 124

This family includes the Thrombospondin N-terminal-like domain, a Laminin G subfamily. Length = 124

>gnl|CDD|215681 pfam00054, Laminin_G_1, Laminin G domain

 Score = 88.9 bits (221), Expect = 7e-21
 Identities = 42/134 (31%), Positives = 67/134 (50%), Gaps = 8/134 (5%)

Query: 682 FVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKKPVNDGI 741
           F T + + LLL+NG  +      R+F+A+ + +G LE SYDLG G   +  S   +NDG 
Sbjct: 1   FRTTEPSGLLLYNGTQT-----ERDFLALELRDGRLEVSYDLGSGAAVV-RSGDKLNDGK 54

Query: 742 KHSVNVTRINKFGSLEVDSVIVGKGESPGSQDV-INTRGNIYLGGTPNM-DLMTGGRYVH 799
            HSV + R  + G+L VD      GESP      ++  G +Y+GG P++   +       
Sbjct: 55  WHSVELERNGRSGTLSVDGEARVTGESPLGATTDLDVDGPLYVGGLPSLAVKLRRLAISP 114

Query: 800 PMSGLMMNIHIQNK 813
              G + ++ +  K
Sbjct: 115 SFDGCIRDVIVNGK 128

Length = 131

>gnl|CDD|215681 pfam00054, Laminin_G_1, Laminin G domain

 Score = 82.0 bits (203), Expect = 2e-18
 Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 9/138 (6%)

Query: 413 FKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVG--LVVLRSKVTLVPHE 470
           F+ T+ +GL++Y G         + DF++  L DG     +D+G    V+RS   L   +
Sbjct: 1   FRTTEPSGLLLYNGTQT------ERDFLALELRDGRLEVSYDLGSGAAVVRSGDKLNDGK 54

Query: 471 WVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTPSLSVEVT 530
           W  V + ++ + G LSV GE  + G +P      L++  PLY+GG     V         
Sbjct: 55  WHSVELERNGRSGTLSVDGEARVTGESPLGATTDLDVDGPLYVGGLPSLAVKLRRLAISP 114

Query: 531 EGFHGCISTIDVLGSELD 548
             F GCI  + V G  LD
Sbjct: 115 -SFDGCIRDVIVNGKPLD 131

Length = 131

>gnl|CDD|238058 cd00110, LamG, Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans

 Score = 53.6 bits (129), Expect = 3e-08
 Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 4/76 (5%)

Query: 222 FKHGSYLAYPTPK-TMRKFKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKHMEF 280
           F   SY+  PT      +  +S         +G++LY+G      GDF++L + +  +  
Sbjct: 4   FSGSSYVRLPTLPAPRTRLSISFSFRTTS-PNGLLLYAG--SQNGGDFLALELEDGRLVL 60

Query: 281 RFDTGSATPLYSNDAP 296
           R+D GS + + S+  P
Sbjct: 61  RYDLGSGSLVLSSKTP 76

Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules. Length = 151

>gnl|CDD|214598 smart00282, LamG, Laminin G domain

 Score = 51.2 bits (123), Expect = 9e-08
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)

Query: 60  MFVDGIGPFSGESQGAFQGLDLSELVYIGAVPDFGEIHPSAGFSNGFKGCVSRLKYN 116
           + VDG    SGES G    L+L   +Y+G +P+  ++ P    + GF+GC+  LK N
Sbjct: 75  LSVDGGNRVSGESPGGLTILNLDGPLYLGGLPEDLKL-PPLPVTPGFRGCIRNLKVN 130

Length = 132

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 47.0 bits (112), Expect = 6e-07
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 309 GSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSREN--TLTLQEIKNSDAGMYVCKVS 366
           G  +TLTC  +       TW K  +G  LP       +  TLT++ +   D+G+Y C   
Sbjct: 2   GQSVTLTCPAEGNPVPNITWLK--DGKPLPESNRFVASGSTLTIKSVSLEDSGLYTCVAE 59

Query: 367 NK 368
           N 
Sbjct: 60  NS 61

Length = 63

>gnl|CDD|238058 cd00110, LamG, Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 6/69 (8%)

Query: 53  KLNVER-----MMFVDGIGPFSGESQGAFQGLDLSELVYIGAVPDFGEIHPSAGFSNGFK 107
            ++VER      + VDG       S G    L+L   +Y+G +P+  +       S GF 
Sbjct: 84  SVSVERNGRSVTLSVDGERVVESGSPGGSALLNLDGPLYLGGLPEDLKSPGLPV-SPGFV 142

Query: 108 GCVSRLKYN 116
           GC+  LK N
Sbjct: 143 GCIRDLKVN 151

Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules. Length = 151

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 46.3 bits (110), Expect = 2e-06
 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 5/77 (6%)

Query: 309 GSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSREN-----TLTLQEIKNSDAGMYVC 363
           G  +TL+C      P E TW K+    +   G FS        TLT+  +   D+G Y C
Sbjct: 9   GESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTC 68

Query: 364 KVSNKDMTVEIPSILLV 380
             +N   +    + L V
Sbjct: 69  AATNSSGSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 46.3 bits (110), Expect = 2e-06
 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 5/77 (6%)

Query: 309 GSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSREN-----TLTLQEIKNSDAGMYVC 363
           G  +TL+C      P E TW K+    +   G FS        TLT+  +   D+G Y C
Sbjct: 9   GESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTC 68

Query: 364 KVSNKDMTVEIPSILLV 380
             +N   +    + L V
Sbjct: 69  AATNSSGSASSGTTLTV 85

Length = 85

>gnl|CDD|238011 cd00054, EGF_CA, Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

 Score = 43.8 bits (104), Expect = 4e-06
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 4/39 (10%)

Query: 136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRC 174
           + C S   N C N G C +  T   Y C CPPG++G  C
Sbjct: 3   DECAS--GNPCQNGGTCVN--TVGSYRCSCPPGYTGRNC 37

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements. Length = 38

>gnl|CDD|238011 cd00054, EGF_CA, Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

 Score = 43.0 bits (102), Expect = 7e-06
 Identities = 16/33 (48%), Positives = 18/33 (54%)

Query: 612 CMKGDVCKNGGMCKVTPDSYECLCSLGYAPPNC 644
           C  G+ C+NGG C  T  SY C C  GY   NC
Sbjct: 5   CASGNPCQNGGTCVNTVGSYRCSCPPGYTGRNC 37

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements. Length = 38

>gnl|CDD|215652 pfam00008, EGF, EGF-like domain

 Score = 43.2 bits (102), Expect = 7e-06
 Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 141 SKHNNCINNGLCQDAATRIGYTCICPPGFSGDR 173
           S +N C N G C D  T  GYTC CP G++G R
Sbjct: 2   SPNNPCSNGGTCVD--TPGGYTCECPEGYTGKR 32

There is no clear separation between noise and signal. pfam00053 is very similar, but has 8 instead of 6 conserved cysteines. Includes some cytokine receptors. The EGF domain misses the N-terminus regions of the Ca2+ binding EGF domains (this is the main reason of discrepancy between swiss-prot domain start/end and Pfam). The family is hard to model due to many similar but different sub-types of EGF domains. Pfam certainly misses a number of EGF domains. Length = 32

>gnl|CDD|238011 cd00054, EGF_CA, Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 19/37 (51%), Positives = 21/37 (56%), Gaps = 4/37 (10%)

Query: 571 CAPK-PCQNYGICYPTDTSERGYNCSCLTGYSGDHCE 606
           CA   PCQN G C  T  S   Y CSC  GY+G +CE
Sbjct: 5   CASGNPCQNGGTCVNTVGS---YRCSCPPGYTGRNCE 38

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements. Length = 38

>gnl|CDD|214598 smart00282, LamG, Laminin G domain

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 240 KVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKHMEFRFDTGSATPLYSNDAPAFN 299
            +S         +G++LY+G    G  D+++L +R+  +  R+D GS     ++D    N
Sbjct: 1   SISFSFRTTS-PNGLLLYAGSKGGG--DYLALELRDGRLVLRYDLGSGPARLTSDPTPLN 57

Query: 300 P 300
            
Sbjct: 58  D 58

Length = 132

>gnl|CDD|143231 cd05754, Ig3_Perlecan_like, Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

 Score = 42.5 bits (100), Expect = 4e-05
 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 5/77 (6%)

Query: 299 NPVSTKEAPYGSKITLTCNNDLEAPVEYT--WSKRSNGHVLPFGAFSRENTLTLQEIKNS 356
               ++E   G+ ++  C    ++P  YT  W++   G  LP  A      LT++ ++ S
Sbjct: 6   EEPRSQEVRPGADVSFICRAKSKSPA-YTLVWTRVGGG--LPSRAMDFNGILTIRNVQLS 62

Query: 357 DAGMYVCKVSNKDMTVE 373
           DAG YVC  SN   T E
Sbjct: 63  DAGTYVCTGSNMLDTDE 79

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2. Length = 85

>gnl|CDD|216930 pfam02210, Laminin_G_2, Laminin G domain

 Score = 43.2 bits (102), Expect = 5e-05
 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 60  MFVDGIGPFSGESQGAFQGLDLSELVYIGAVPDFGEIHPSAGFSNGFKGCVSRLKY 115
           + VDG    S    G+   L+L+  +Y+G +P+   +      + GF GC+  ++ 
Sbjct: 70  LSVDGGTVVSEALPGSSSILNLNGPLYLGGLPEDSGL-SLLPVTEGFVGCIRNVRV 124

This family includes the Thrombospondin N-terminal-like domain, a Laminin G subfamily. Length = 124

>gnl|CDD|238010 cd00053, EGF, Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium

 Score = 40.5 bits (95), Expect = 5e-05
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 141 SKHNNCINNGLCQDAATRIGYTCICPPGFSGDR 173
           +  N C N G C +  T   Y C+CPPG++GDR
Sbjct: 3   AASNPCSNGGTCVN--TPGSYRCVCPPGYTGDR 33

Length = 36

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 41.7 bits (97), Expect = 6e-05
 Identities = 25/72 (34%), Positives = 30/72 (41%), Gaps = 12/72 (16%)

Query: 312 ITLTCNNDLEAPVEYTWSKRSNGHVLP----------FGAFSRENTLTLQEIKNSDAGMY 361
           +TLTC      P   TW K  NG  LP           G  S  +TLT+  +   D+G Y
Sbjct: 1   VTLTCLASGPPPPTITWLK--NGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTY 58

Query: 362 VCKVSNKDMTVE 373
            C  SN   TV 
Sbjct: 59  TCVASNSAGTVS 70

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143209 cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

 Score = 42.1 bits (99), Expect = 7e-05
 Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 17/95 (17%)

Query: 296 PAFNPVSTKEAPYGSKITLTCNNDLEAPVEYTWS----------KRSNGHVLPFGAFSRE 345
           P    +  + A    +ITLTC  + +   E TW           K  +G ++  G   R 
Sbjct: 3   PKITYLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHA-RV 61

Query: 346 NTLTLQEIKNSDAGMYVCKVSN------KDMTVEI 374
           ++LTL++++ +DAG Y C+ SN      + M +E+
Sbjct: 62  SSLTLKDVQLTDAGRYDCEASNRIGGDQQSMYLEV 96

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Also included in this group is NCAM-2 (also known as OCAM/mamFas II and RNCAM) NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE). Length = 96

>gnl|CDD|143169 cd04968, Ig3_Contactin_like, Third Ig domain of contactin

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 6/55 (10%)

Query: 4  IKWSRADGLPLQRY---AEGNVLRITNARLQDSGKYKCE---IQGHDSFRGSDYV 52
          IKW + DG           G VL+I N + +D G Y+CE   I+G D+ +G  YV
Sbjct: 33 IKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEGTYECEAENIKGKDTHQGRIYV 87

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|238010 cd00053, EGF, Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium

 Score = 38.2 bits (89), Expect = 4e-04
 Identities = 17/38 (44%), Positives = 18/38 (47%), Gaps = 5/38 (13%)

Query: 571 CA-PKPCQNYGICYPTDTSERGYNCSCLTGYSGD-HCE 606
           CA   PC N G C  T      Y C C  GY+GD  CE
Sbjct: 2   CAASNPCSNGGTCVNT---PGSYRCVCPPGYTGDRSCE 36

Length = 36

>gnl|CDD|214542 smart00179, EGF_CA, Calcium-binding EGF-like domain

 Score = 38.4 bits (90), Expect = 4e-04
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 8/44 (18%)

Query: 132 VDSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFS-GDRC 174
           +D C +      N C N G C +  T   Y C CPPG++ G  C
Sbjct: 2   IDECAS-----GNPCQNGGTCVN--TVGSYRCECPPGYTDGRNC 38

Length = 39

>gnl|CDD|214542 smart00179, EGF_CA, Calcium-binding EGF-like domain

 Score = 38.4 bits (90), Expect = 4e-04
 Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 612 CMKGDVCKNGGMCKVTPDSYECLCSLGYAP-PNC 644
           C  G+ C+NGG C  T  SY C C  GY    NC
Sbjct: 5   CASGNPCQNGGTCVNTVGSYRCECPPGYTDGRNC 38

Length = 39

>gnl|CDD|222092 pfam13385, Laminin_G_3, Concanavalin A-like lectin/glucanases superfamily

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 37/152 (24%), Positives = 48/152 (31%), Gaps = 28/152 (18%)

Query: 393 SYLALPTLTDAHLHFSIELSFKPTDYNG---LIMYTGDSNMKSYKGKGDFVSFGLE-DGY 448
            Y+ LP L      F++    KP    G   L++    S              GL+  G 
Sbjct: 10  DYVTLPNLDLPTGSFTVSAWVKPDSLPGGTRLLIGGSGSGG---------FGLGLDGSGK 60

Query: 449 PVFRF---DVGLVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVL 505
             F       G   + S   L P +W  V +  D    KL V G    VGST        
Sbjct: 61  LRFTVGGGGGGAATVTSGAPLPPGQWHHVAVTYDGGTLKLYVNGVL--VGSTTLSGTITS 118

Query: 506 NLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCI 537
               PLY+G  N               F+G I
Sbjct: 119 GTTGPLYIGASNGG----------DRYFNGAI 140

This domain belongs to the Concanavalin A-like lectin/glucanases superfamily. Length = 156

>gnl|CDD|238010 cd00053, EGF, Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium

 Score = 37.8 bits (88), Expect = 6e-04
 Identities = 14/28 (50%), Positives = 16/28 (57%)

Query: 612 CMKGDVCKNGGMCKVTPDSYECLCSLGY 639
           C   + C NGG C  TP SY C+C  GY
Sbjct: 2   CAASNPCSNGGTCVNTPGSYRCVCPPGY 29

Length = 36

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 38.6 bits (90), Expect = 8e-04
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 6/59 (10%)

Query: 309 GSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCKVSN 367
           G  +TLTC+     P  YTW K  +G  L     S +N      +   D+G Y C  SN
Sbjct: 14  GEDVTLTCSAPGNPPPNYTWYK--DGVPLS----SSQNGFFTPNVSAEDSGTYTCVASN 66

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

 Score = 38.7 bits (90), Expect = 8e-04
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 305 EAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSREN--TLTLQEIKNSDAGMYV 362
             P GS + L C        + TW K +          SR+   TL+L+ +K  D+G Y 
Sbjct: 5   ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYT 64

Query: 363 CKVSNK 368
           C VSN+
Sbjct: 65  CHVSNR 70

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 82

>gnl|CDD|143191 cd05714, Ig_CSPGs_LP, Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

 Score = 39.2 bits (92), Expect = 9e-04
 Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 6/49 (12%)

Query: 12  LPLQRYAEGNV-LRITNARLQDSGKYKCE-IQG-HDSFRGSDYVKLNVE 57
           +PL     G+  L IT+ RL+DSG+Y+CE I G  D     D V+L V 
Sbjct: 58  VPLYPADPGDASLVITDLRLEDSGRYRCEVIDGIEDE---QDTVELEVR 103

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. There is considerable evidence that HA-binding CSPGs are involved in developmental processes in the central nervous system. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes. Length = 106

>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain

 Score = 37.7 bits (87), Expect = 0.001
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 309 GSKITLTCNNDL-EAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCKVSN 367
           G  +TLTC+ +    P   +W +  +      G  S  +TLTL  + + D+G Y C  SN
Sbjct: 15  GGGVTLTCSAEGGPPPPTISWYRNGSISGGSGGLGSSGSTLTLSSVTSEDSGTYTCVASN 74

This family contains immunoglobulin-like domains. Length = 74

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 37.0 bits (86), Expect = 0.002
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 5/44 (11%)

Query: 4  IKWSRADGLPLQR----YAEGNVLRITNARLQDSGKYKCEIQGH 43
          I W + DG PL       A G+ L I +  L+DSG Y C  +  
Sbjct: 19 ITWLK-DGKPLPESNRFVASGSTLTIKSVSLEDSGLYTCVAENS 61

Length = 63

>gnl|CDD|143190 cd05713, Ig_MOG_like, Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

 Score = 38.3 bits (90), Expect = 0.002
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)

Query: 18 AEGNV-LRITNARLQDSGKYKCEIQGHDSF 46
          AEG+V LRI N R  D G Y C  Q    +
Sbjct: 61 AEGSVALRIHNVRASDEGLYTCFFQSDGFY 90

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM). Length = 100

>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain

 Score = 37.1 bits (86), Expect = 0.002
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 5/62 (8%)

Query: 309 GSKITLTCNNDLEAPVEYTWSKRSNGHVLP-----FGAFSRENTLTLQEIKNSDAGMYVC 363
           GS +TLTC+      V+ TW K   G                 TLT+  +   D+G Y C
Sbjct: 1   GSSVTLTCSVSGPPQVDVTWFKEGKGLEESTTVGTDENRVSSITLTISNVTPEDSGTYTC 60

Query: 364 KV 365
            V
Sbjct: 61  VV 62

Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62

>gnl|CDD|143277 cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 37.3 bits (86), Expect = 0.003
 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 11/67 (16%)

Query: 311 KITLTCNNDLEAPVEYTWS----------KRSNGHVLPFGAFSRENTLTLQEIKNSDAGM 360
           +ITLTC    +     TW           K  +GH++   + +R ++LTL+ I+ +DAG 
Sbjct: 19  QITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIV-VRSHARVSSLTLKYIQYTDAGE 77

Query: 361 YVCKVSN 367
           Y+C  SN
Sbjct: 78  YLCTASN 84

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 97

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	834
KOG3514|consensus	1591		100.0
KOG4289|consensus	2531		100.0
KOG3516|consensus	1306		100.0
KOG3516|consensus	1306		100.0
KOG3514|consensus	1591		100.0
KOG1219|consensus	4289		100.0
KOG4289|consensus	2531		99.97
PF00054	131	Laminin_G_1: Laminin G domain; InterPro: IPR012679	99.92
smart00282	135	LamG Laminin G domain.	99.9
cd00110	151	LamG Laminin G domain; Laminin G-like domains are	99.9
PF00054	131	Laminin_G_1: Laminin G domain; InterPro: IPR012679	99.86
PF02210	128	Laminin_G_2: Laminin G domain; InterPro: IPR012680	99.85
KOG1219|consensus	4289		99.84
smart00282	135	LamG Laminin G domain.	99.78
cd00110	151	LamG Laminin G domain; Laminin G-like domains are	99.76
PF02210	128	Laminin_G_2: Laminin G domain; InterPro: IPR012680	99.68
KOG3509|consensus	964		99.33
smart00210	184	TSPN Thrombospondin N-terminal -like domains. Hepa	99.03
PF13385	157	Laminin_G_3: Concanavalin A-like lectin/glucanases	98.7
KOG1214|consensus	1289		98.6
KOG1217|consensus	487		98.56
PF00008	32	EGF: EGF-like domain This is a sub-family of the P	98.52
smart00159	206	PTX Pentraxin / C-reactive protein / pentaxin fami	98.48
KOG1214|consensus	1289		98.47
PF00008	32	EGF: EGF-like domain This is a sub-family of the P	98.47
cd00152	201	PTX Pentraxins are plasma proteins characterized b	98.4
KOG3509|consensus	964		98.32
smart00210	184	TSPN Thrombospondin N-terminal -like domains. Hepa	98.32
PF00354	195	Pentaxin: Pentaxin family; InterPro: IPR001759 Pen	98.26
KOG1225|consensus	525		98.04
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	98.04
KOG1225|consensus	525		98.03
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	97.96
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	97.94
smart00179	39	EGF_CA Calcium-binding EGF-like domain.	97.91
KOG1217|consensus	487		97.9
KOG0994|consensus	1758		97.89
smart00179	39	EGF_CA Calcium-binding EGF-like domain.	97.88
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	97.87
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	97.85
PF13385	157	Laminin_G_3: Concanavalin A-like lectin/glucanases	97.82
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	97.8
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	97.79
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	97.79
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	97.78
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	97.75
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	97.75
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	97.74
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	97.73
PF02973	190	Sialidase: Sialidase, N-terminal domain; InterPro:	97.7
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	97.7
cd00054	38	EGF_CA Calcium-binding EGF-like domain, present in	97.7
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	97.69
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	97.67
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	97.65
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	97.64
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	97.63
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	97.63
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	97.6
cd00054	38	EGF_CA Calcium-binding EGF-like domain, present in	97.6
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	97.6
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	97.6
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	97.59
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	97.59
PF07645	42	EGF_CA: Calcium-binding EGF domain; InterPro: IPR0	97.57
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	97.56
cd00152	201	PTX Pentraxins are plasma proteins characterized b	97.55
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	97.53
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	97.52
smart00159	206	PTX Pentraxin / C-reactive protein / pentaxin fami	97.51
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	97.51
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	97.51
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	97.5
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	97.48
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	97.47
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	97.47
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	97.43
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	97.42
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	97.41
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	97.38
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	97.36
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	97.36
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	97.36
smart00181	35	EGF Epidermal growth factor-like domain.	97.35
smart00560	133	LamGL LamG-like jellyroll fold domain.	97.34
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	97.34
KOG3513|consensus	1051		97.34
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	97.33
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	97.32
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	97.29
cd00053	36	EGF Epidermal growth factor domain, found in epide	97.27
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	97.26
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	97.26
smart00181	35	EGF Epidermal growth factor-like domain.	97.24
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	97.24
PF07645	42	EGF_CA: Calcium-binding EGF domain; InterPro: IPR0	97.23
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	97.22
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	97.22
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	97.2
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	97.2
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	97.19
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	97.19
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	97.19
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	97.18
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	97.15
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	97.14
KOG4260|consensus	350		97.14
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	97.14
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	97.13
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	97.11
cd00053	36	EGF Epidermal growth factor domain, found in epide	97.1
PF00047	64	ig: Immunoglobulin domain The Prosite family only	97.08
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	97.08
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	97.07
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	97.03
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	97.02
smart00408	63	IGc2 Immunoglobulin C-2 Type.	97.0
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	96.96
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	96.95
KOG1226|consensus	783		96.93
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	96.91
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	96.9
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	96.86
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	96.84
PF12661	13	hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E	96.83
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	96.82
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	96.81
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	96.81
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	96.75
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	96.73
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	96.67
PF00354	195	Pentaxin: Pentaxin family; InterPro: IPR001759 Pen	96.66
KOG4260|consensus	350		96.65
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	96.64
KOG4194|consensus	873		96.63
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	96.62
PF07974	32	EGF_2: EGF-like domain; InterPro: IPR013111 A sequ	96.62
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	96.6
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	96.59
PHA02826	227	IL-1 receptor-like protein; Provisional	96.58
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	96.57
PF12661	13	hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E	96.55
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	96.51
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	96.5
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	96.49
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	96.47
PHA03099	139	epidermal growth factor-like protein (EGF-like pro	96.39
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	96.38
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	96.34
PF07974	32	EGF_2: EGF-like domain; InterPro: IPR013111 A sequ	96.34
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	96.33
PF12662	24	cEGF: Complement Clr-like EGF-like	96.32
KOG1834|consensus	952		96.2
KOG3513|consensus	1051		96.15
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	95.93
PHA02887	126	EGF-like protein; Provisional	95.87
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	95.75
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	95.66
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	95.63
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	95.51
PF02973	190	Sialidase: Sialidase, N-terminal domain; InterPro:	95.43
PF12947	36	EGF_3: EGF domain; InterPro: IPR024731 This entry	95.41
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	95.39
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	95.3
PHA02826	227	IL-1 receptor-like protein; Provisional	95.3
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	95.24
PF12947	36	EGF_3: EGF domain; InterPro: IPR024731 This entry	95.23
smart00560	133	LamGL LamG-like jellyroll fold domain.	95.0
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	94.87
PHA02887	126	EGF-like protein; Provisional	94.62
PHA02785	326	IL-beta-binding protein; Provisional	94.46
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	94.43
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	94.35
PHA03099	139	epidermal growth factor-like protein (EGF-like pro	94.21
PHA02785	326	IL-beta-binding protein; Provisional	94.19
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	93.61
smart00409	86	IG Immunoglobulin.	93.61
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	93.6
KOG4222|consensus	1281		93.56
smart00051	63	DSL delta serrate ligand.	93.49
PHA02633	63	hypothetical protein; Provisional	93.48
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	93.33
PF06439	185	DUF1080: Domain of Unknown Function (DUF1080); Int	93.06
KOG1836|consensus	1705		93.0
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	92.7
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	92.62
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	92.6
KOG1836|consensus	1705		92.49
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	92.45
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	92.19
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	92.05
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	92.02
PF12662	24	cEGF: Complement Clr-like EGF-like	91.78
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	91.78
KOG0994|consensus	1758		91.78
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	91.6
PF06247	197	Plasmod_Pvs28: Plasmodium ookinete surface protein	91.36
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	91.36
smart00051	63	DSL delta serrate ligand.	91.28
KOG4221|consensus	1381		91.2
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	91.15
KOG4194|consensus	873		91.1
KOG1226|consensus	783		91.09
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	91.08
PF14670	36	FXa_inhibition: Coagulation Factor Xa inhibitory s	90.9
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	90.81
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	90.75
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	90.34
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	90.22
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	89.94
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	89.89
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	89.78
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	89.78
KOG4222|consensus	1281		89.58
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	89.2
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	88.74
cd00055	50	EGF_Lam Laminin-type epidermal growth factor-like	88.41
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	88.32
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	87.77
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	87.64
smart00406	81	IGv Immunoglobulin V-Type.	87.48
PF00053	49	Laminin_EGF: Laminin EGF-like (Domains III and V);	87.32
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	87.21
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	86.19
KOG3546|consensus	1167		85.81
KOG4221|consensus	1381		85.63
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	85.57
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	85.44
PF01414	63	DSL: Delta serrate ligand; InterPro: IPR001774 Lig	85.13
cd01475	224	vWA_Matrilin VWA_Matrilin: In cartilaginous plate,	85.02
smart00180	46	EGF_Lam Laminin-type epidermal growth factor-like	84.78
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	84.74
PF06247	197	Plasmod_Pvs28: Plasmodium ookinete surface protein	84.41
PF06439	185	DUF1080: Domain of Unknown Function (DUF1080); Int	84.0
PF14670	36	FXa_inhibition: Coagulation Factor Xa inhibitory s	83.85
PF01414	63	DSL: Delta serrate ligand; InterPro: IPR001774 Lig	83.57
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	83.48
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	83.27
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	82.38
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	81.73
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	81.68
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	80.16

>KOG3514|consensus

Probab=100.00  E-value=1.2e-63  Score=542.82  Aligned_cols=689  Identities=23%  Similarity=0.408  Sum_probs=517.6

Q ss_pred             CceeEEEcCCcceeeeeCCcccCCCcceeeeeCCCCCCCcCC----CCccCCCCccceEEEEEEcCEEEEeecccccccC
Q psy9228          56 VERMMFVDGIGPFSGESQGAFQGLDLSELVYIGAVPDFGEIH----PSAGFSNGFKGCVSRLKYNKTEFELFKMAVERVG  131 (834)
Q Consensus        56 ~~g~~cvd~~~~~~~~~~~~~~g~~~~~~~~~gg~p~~~~~~----~~~~~~~gf~gCi~~~~~~~~~~~~~~~~~~~~~  131 (834)
                      +|-.|-||++..+.-.-...|.-.+.-.++||||+|....++    +.....+.|.|-+..|.+...+-.+...+....+
T Consensus       117 e~t~L~vDgv~~~~~~~~~~f~fg~iasdvfVGGlP~~~~la~l~lp~v~yep~frg~~rnl~y~~~p~g~t~~q~l~~~  196 (1591)
T KOG3514|consen  117 ENTKLEVDGVLVFKILNQRSFVFGNIASDVFVGGLPNMHMLAVLSLPLVRYEPRFRGNVRNLMYRQYPQGVTSPQLLEVG  196 (1591)
T ss_pred             ccceEEechhhhhhhhhcceeeeeeeehheeecCCChHHhhhhhcCcccccccccCccceeeeeecCCCCcCChhhhhcc
Confidence            577899999877766666667666666799999999655433    2356677888999988887766554443222222


Q ss_pred             CCCCCccCCCCCCCCCCCCEeccCCCCCceEeeCCCCCCCCCCCCCCCCccC-CCCCC-CeeecCCCCeEEeCCCCcccC
Q psy9228         132 VDSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYP-GACGD-GSCQDVDGAMKCLCPIGTAGK  209 (834)
Q Consensus       132 ~~~c~~C~~~~~~pC~n~g~C~~~~~~~~~~C~C~~g~~G~~Ce~~~~~C~~-~~C~~-g~C~~~~~~~~C~C~~g~~G~  209 (834)
                      ..  ..|.   +.+|...                             ..|.. .+|++ |.|.....+.+|.|..-+.|.
T Consensus       197 ~d--~~c~---d~~~~~~-----------------------------~~~~~~~~c~~~g~c~s~d~gp~c~c~~~~dgq  242 (1591)
T KOG3514|consen  197 TD--TNCD---DHCKSKS-----------------------------MSSREQFVCLNDGECYSSDDGPHCDCQFDHDGQ  242 (1591)
T ss_pred             cC--CCCc---CCCCCcc-----------------------------ccccccceeccCCeEecCCCCCccccccccCcc
Confidence            11  1233   2222221                             11221 34554 677777777888888888889


Q ss_pred             cccccccccccCCCCcceEEcCCCCCc---ceEEEEEEEcccCCCceEEEeecccCCCCCCeEEEEEecCeEEEEEecCC
Q psy9228         210 RCEQKIKILQPAFKHGSYLAYPTPKTM---RKFKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKHMEFRFDTGS  286 (834)
Q Consensus       210 ~Ce~~~~~~~~~F~g~~y~~~~~~~~~---~~~~i~l~f~t~~~~~glll~~~~~~~~~~d~~~l~l~~G~v~~~~~~g~  286 (834)
                      +||++.....+.|.|.-|+.|....+.   ...+|+|.|||. +.+|||||.+..    .||+.|.|++|.|.+.+++++
T Consensus       243 ~cekeK~~~eaTF~G~ef~~YDls~npI~s~~d~itl~FrT~-q~ngllfytG~~----~dYlnlaL~dGaV~l~~~l~~  317 (1591)
T KOG3514|consen  243 NCEKEKNDGEATFGGDEFVGYDLSQNPIRSKKDNITLTFRTV-QGNGLLFYTGDE----KDYLNLALQDGAVSLSSKLDG  317 (1591)
T ss_pred             ccccccCcceEEecCceEEEeeccCCcccccccceEEEEEEe-cCceeEEEccCC----cceeeEeecCCcEEEEEecCC
Confidence            999888788999999999999986543   678899999999 699999999976    599999999999999999998


Q ss_pred             Cc--ceecCCCC--Ccccccce-eccCCCeEEEEecCCCC----CCceeeeeecCCCceeccccccccccccccccccCC
Q psy9228         287 AT--PLYSNDAP--AFNPVSTK-EAPYGSKITLTCNNDLE----APVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSD  357 (834)
Q Consensus       287 ~~--~~~~~~~~--~~~~~~~~-~~~~~~~v~l~vd~~~~----~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~  357 (834)
                      +.  .+..+...  +.+.||.+ ..|+-..+++.||....    ...+++|...  ...+|.|+.+....     ...+.
T Consensus       318 g~~e~~~~p~~~rfdD~~WH~V~v~R~~~m~t~~VDg~~t~~~~~a~~~tmlss--s~~fyvgg~~~~~~-----l~gsr  390 (1591)
T KOG3514|consen  318 GDAEIIRMPNSFRFDDDSWHTVIVERSLQMMTLIVDGRRTEIRQYAPELTMLSS--SDFFYVGGSPNTAD-----LPGSR  390 (1591)
T ss_pred             ccceeEEccccccccCCcceEEEEEeeeEEEEEEEccEEecccccccceeEeec--cceEEecCCCCccc-----cCCCc
Confidence            86  23334333  44557755 55666778889987543    3345555332  22345555442211     11112


Q ss_pred             CceEEEEeCCC-------------------------CceeEeeEEeeeeccccccCCCcccccccCCccccceeEEEEEE
Q psy9228         358 AGMYVCKVSNK-------------------------DMTVEIPSILLVTDSVPLFTQKPLSYLALPTLTDAHLHFSIELS  412 (834)
Q Consensus       358 ~~~~~C~~~~~-------------------------~~~~~~~~~~~~~~~~~~f~~~~~s~l~~~~~~~~~~~~~i~~~  412 (834)
                      ..+.+|++...                         ++...|+..   ..-.|..|..+.||+.+|.|... ..-+|+|.
T Consensus       391 VsF~GClkkV~y~~d~~rl~L~~LAk~g~~~~k~~G~l~y~C~n~---~~~DpvtFtt~es~l~LP~Wnt~-~~gSiSf~  466 (1591)
T KOG3514|consen  391 VSFMGCLKKVVYKNDDTRLELSRLAKQGDSKMKTEGDLSYSCENV---AQLDPVTFTTPESYLTLPRWNTK-KSGSISFD  466 (1591)
T ss_pred             eeeeeeeeeeEeccCceeehhhHHhhcCCceeEeeceEEEecCCC---CccCceeeecccceeeccccccC-CcceeEEE
Confidence            23556665421                         111122211   12267788999999999999754 45789999


Q ss_pred             EeeCCCCeeEEEeccCCccccCCCCCeEEEEEECcEEEEEEeccc--EEEE-eeeeecCCCeEEEEEEEECCeEEEEECC
Q psy9228         413 FKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVGL--VVLR-SKVTLVPHEWVVVTIIKDFKEGKLSVGG  489 (834)
Q Consensus       413 frt~~~~GlLl~~~~~~~~~~~~~~d~~~l~L~~G~l~~~~~~G~--~~i~-s~~~~~dg~wH~V~v~~~~~~~~l~VD~  489 (834)
                      |||+++||||+|.....    ....||++++|.||++.+.+++|+  +.++ +..+++||+||+|.+.|+++.+++.||.
T Consensus       467 FRTtepnGlil~~~g~~----~~~~d~~A~ELldghlyl~ldlGSG~iklras~rkv~DGeWhhv~l~R~gR~gsvsVd~  542 (1591)
T KOG3514|consen  467 FRTTEPNGLILFHGGPQ----ANATDYFAIELLDGHLYLLLDLGSGVIKLRASSRKVNDGEWHHVDLQRDGRTGSVSVDA  542 (1591)
T ss_pred             EeecCCCceEEEccCcc----cccccEEEEEEeCCeEEEEEecCCceEEeeeecccccCCceEEEEeeccCccceEEEee
Confidence            99999999999998754    568999999999999999999985  4444 5678999999999999999999999998


Q ss_pred             eeeeeeecCCCccccccCCCceeeccccCCCcccC---cCcccccCceeEEeeeEEcCeeeeeccc--ccccCCcc-cCC
Q psy9228         490 EPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTPS---LSVEVTEGFHGCISTIDVLGSELDLINS--AVDSANIM-DCS  563 (834)
Q Consensus       490 ~~~~~~~~~g~~~~~l~~~~~l~iGG~~~~~~~~~---~~~~~~~gF~GCi~~v~ing~~~~~~~~--~~~~~~~~-~C~  563 (834)
                      ..... ..||. ...|+++.++|+|-.+.. ...+   +......||.|||+++.|+|+..++...  +..++++. .|.
T Consensus       543 ~~~df-~tpG~-s~iL~ld~~mylG~~~n~-l~~P~~vWta~L~~GyvGCirdl~i~G~s~di~q~ae~q~sagvkpsCs  619 (1591)
T KOG3514|consen  543 IKTDF-STPGD-SEILDLDDPMYLGEVPNN-LVYPSEVWTAALRKGYVGCIRDLFIDGVSTDIRQEAEAQNSAGVKPSCS  619 (1591)
T ss_pred             eecCc-cCCCc-ceeEeecCceeeccCCCC-ccCcHHHHHHHHhccchheehhheecceehhhHHHhhhccccccCcccc
Confidence            76654 46777 889999999999966664 2222   2234578999999999999999998764  44556664 677


Q ss_pred             CCCCCCCCCCCCCCCCCeecccCCCCCceeeecC-CCCCCCCCccCccCCC-----------------------------
Q psy9228         564 DLESSPVCAPKPCQNYGICYPTDTSERGYNCSCL-TGYSGDHCEKENNMCM-----------------------------  613 (834)
Q Consensus       564 ~~~~~~~C~~~pC~ngg~C~~~~~~~~~~~C~C~-~G~~G~~Ce~~~~~C~-----------------------------  613 (834)
                      ... ...|.+|||+|+|+|.+.|+   .|.|+|. .+|.|+.||.+...=.                             
T Consensus       620 ~~~-~~~C~~nPC~N~g~C~egwN---rfiCDCs~T~~~G~~CerE~t~ls~nGs~~m~i~L~~~~~tq~E~v~iRF~t~  695 (1591)
T KOG3514|consen  620 LSN-EKICESNPCQNGGKCSEGWN---RFICDCSGTGFEGRTCEREATALSYNGSMSMKIVLPHTMHTQAEDVSIRFRTQ  695 (1591)
T ss_pred             hhh-ccccCCCcccCCCCcccccc---ccccccccCcccCccccceeeeEEEcCeeeEEEEecccceeecceEEEEEEec
Confidence            533 23899999999999999999   9999998 8999999997311000                             


Q ss_pred             --------------------------------------------------------------------------------
Q psy9228         614 --------------------------------------------------------------------------------  613 (834)
Q Consensus       614 --------------------------------------------------------------------------------  613 (834)
                                                                                                      
T Consensus       696 r~~Gll~~Tta~~s~D~l~l~L~~g~vkl~v~ls~~~nlfag~~LnDN~WHtvrv~Rrg~~L~L~vD~~~~~~~~~~g~h  775 (1591)
T KOG3514|consen  696 RAYGLLFATTARGSADTLRLELDAGQVKLFVNLSGPENLFAGQSLNDNEWHTVRVVRRGKSLLLYVDFWSVSIYTMNGIH  775 (1591)
T ss_pred             ccceeEEEeccCCCCceEEEEEecceEEEEEecCCCcceeccccccCCcceEEEEEEcccceEEEeccccceeeeecCce
Confidence                                                                                            


Q ss_pred             ---------------------------------------------------CC---------------------------
Q psy9228         614 ---------------------------------------------------KG---------------------------  615 (834)
Q Consensus       614 ---------------------------------------------------~~---------------------------  615 (834)
                                                                         ..                           
T Consensus       776 ~~le~~~i~~g~e~~~~s~~~~nFiG~l~~LvFNG~~Yld~~K~~~~~ls~l~a~fkl~~iv~~paTf~sk~Sy~~la~L  855 (1591)
T KOG3514|consen  776 VRLEFHNIETGTESRAPSSVPSNFIGHLSGLVFNGQDYLDKCKMGDIQLSELSARFKLRAIVADPATFKSKSSYVKLATL  855 (1591)
T ss_pred             EEEEEeeeccccccccCCCCChhhhhhhhheEECcHHHHHHHhcCCcchhhcchhhCceEEeeccceeeechhhhhhhhh
Confidence                                                               00                           


Q ss_pred             --------------------------------------------------------------------------------
Q psy9228         616 --------------------------------------------------------------------------------  615 (834)
Q Consensus       616 --------------------------------------------------------------------------------  615 (834)
                                                                                                      
T Consensus       856 ~ay~s~~l~Fqfkt~sp~gll~fn~gd~ndfi~velvnG~ihYtfdlg~gp~~~k~~sr~hlnDnrWHnV~I~rd~~~~H  935 (1591)
T KOG3514|consen  856 QAYFSMHLFFQFKTTSPDGLLLFNSGDGNDFIAVELVNGYIHYTFDLGNGPTSMKGPSRQHLNDNRWHNVLIYRDKTNTH  935 (1591)
T ss_pred             heeeEEEEEEEEeecCCCeEEEecCCCCCceEEEEEeCcEEEEEEEcCCCcccccCcccCcCccccceeEEEEcCCCCce
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q psy9228         616 --------------------------------------------------------------------------------  615 (834)
Q Consensus       616 --------------------------------------------------------------------------------  615 (834)
                                                                                                      
T Consensus       936 tL~vD~s~~t~~~~g~~~l~l~g~LyiGGv~k~m~~~~p~~~asR~g~~g~~~s~dl~~r~p~L~~~a~~~s~lv~~~~s 1015 (1591)
T KOG3514|consen  936 TLKVDNSSTTQIIDGAVNLDLKGKLYIGGVSKPMYSFLPKLVASRSGFQGCLASLDLGGRLPDLISDALFESGLVEVGCS 1015 (1591)
T ss_pred             EEEecCceEEEEecCccccccccceecccccccccccccceeeccCCCCCCcCccCccccchhHHHHhhhhccceeeecc
Confidence                                                                                            


Q ss_pred             --------CccCCCceeeecCCCcEEcCCC-CCCCCCcccccccceeeEEcC-Cceeeec--hhhhhhccCcceEEEEEE
Q psy9228         616 --------DVCKNGGMCKVTPDSYECLCSL-GYAPPNCAKRVSIGSEVHFLG-EGYVELK--KELIEERRNEETIAFDFV  683 (834)
Q Consensus       616 --------~pC~ngg~C~~~~~~~~C~C~~-g~~G~~Ce~~~~~~~~~~F~g-~s~~~~~--~~~~~~~~~~~~i~~~fr  683 (834)
                              +-|.|.|.|+..|++|.|.|.+ .|+|+.|..+-   ..+.|++ .|-|.|.  ++.. .......|.+.|+
T Consensus      1016 gpst~c~~~acanhG~c~q~w~~~~c~csmtS~~Gp~C~d~g---tTYiFgk~gglI~YtwPpNdR-psTr~DrlAvGFs 1091 (1591)
T KOG3514|consen 1016 GPSTTCSEDACANHGVCIQQWNGIACDCSMTSYSGPRCNDPG---TTYIFGKSGGLITYTWPPNDR-PSTRKDRLAVGFS 1091 (1591)
T ss_pred             CCCcccchhhhhccceeeeeecceeeeccccccCCCccCCCc---eEEEECCCCceEEEecCCCCC-CCcccceEEEEEE
Confidence                    1389999999999999999998 89999998663   3678987 4566664  2221 2347789999999


Q ss_pred             eCCCCeeEEecCCCCCCCCCCcceEEEEEECCEEEEEEEcCCcEEEEEeCCceecCCCcEEEEEEEECCEEEEEEcCeee
Q psy9228         684 TDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIV  763 (834)
Q Consensus       684 T~~~~GlLl~~~~~~~~~~~~~~~~~l~l~~G~l~~~~~~g~~~~~l~~s~~~~nDg~wH~V~i~r~~~~~~l~VD~~~~  763 (834)
                      |..++|+|+.+.....    -+||+.|.|..|+|-+.||+|+..+.|...+..||||++|.|+|+|.+..++|+||..++
T Consensus      1092 Ttq~daVLvRVdSAsg----lgDYlqLhI~qG~igvvfNiGt~Diti~E~~~ivNDgkYHVVRFtR~GGNATLQVD~wpV 1167 (1591)
T KOG3514|consen 1092 TTQPDAVLVRVDSASG----LGDYLQLHINQGKIGVVFNIGTDDITISEHNAIVNDGKYHVVRFTRSGGNATLQVDSWPV 1167 (1591)
T ss_pred             eccCceEEEEEeccCC----CCceEEEEEeccEEEEEEeccCcccccccccccccCCceEEEEEEecCCceEEEecccch
Confidence            9999999999876541    379999999999999999999998888877889999999999999999999999999998


Q ss_pred             ecccCCCC-ccceecCCceEEcCcCCCCCCCCCccCCCceEEEEEEEECCceecccCCCC
Q psy9228         764 GKGESPGS-QDVINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNIHIQNKHISNIGSSA  822 (834)
Q Consensus       764 ~~~~~~~~-~~~l~~~~~lyiGG~p~~~~~~~~~~~~~F~GCi~~v~in~~~~~~l~~~a  822 (834)
                      ......+. ...+|....|-|||.-..         ..|.|-|..|.+||-.+++|....
T Consensus      1168 ~e~yP~grqlTiFNtqa~I~IGGk~qG---------RpFqGqiSGLyyNgLkVLdlAaE~ 1218 (1591)
T KOG3514|consen 1168 NERYPAGRQLTIFNSQARISIGGKFQG---------RPFQGQISGLYYNGLKVLDLAAEN 1218 (1591)
T ss_pred             hhccCCCceeEEeeccceEEecccccC---------CcccceecceEEcceeeeehhhcc
Confidence            77655544 356888899999996522         479999999999999999997654

>KOG4289|consensus

Probab=100.00  E-value=3.1e-56  Score=494.46  Aligned_cols=454  Identities=24%  Similarity=0.487  Sum_probs=353.2

Q ss_pred             EcCCcceeeeeCCcccCCCcceeeeeCCCCCCCcCCCCccCCCCccceEEEEEEcCEEEEeecccccccCCCCCCccCCC
Q psy9228          62 VDGIGPFSGESQGAFQGLDLSELVYIGAVPDFGEIHPSAGFSNGFKGCVSRLKYNKTEFELFKMAVERVGVDSCNTCKSS  141 (834)
Q Consensus        62 vd~~~~~~~~~~~~~~g~~~~~~~~~gg~p~~~~~~~~~~~~~gf~gCi~~~~~~~~~~~~~~~~~~~~~~~~c~~C~~~  141 (834)
                      +..++.+.|.||+||+|.+|++.+                                                  |.|.  
T Consensus      1216 i~pvnglrCrCPpGFTgd~CeTei--------------------------------------------------DlCY-- 1243 (2531)
T KOG4289|consen 1216 IHPVNGLRCRCPPGFTGDYCETEI--------------------------------------------------DLCY-- 1243 (2531)
T ss_pred             ccccCceeEeCCCCCCcccccchh--------------------------------------------------Hhhh--
Confidence            567778889999999988887765                                                  5788  


Q ss_pred             CCCCCCCCCEeccCCCCCceEeeCCCCCCCCCCCCC--CCCccCCCCCC-CeeecCC-CCeEEeCCCC-cccCccccccc
Q psy9228         142 KHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVL--GEPCYPGACGD-GSCQDVD-GAMKCLCPIG-TAGKRCEQKIK  216 (834)
Q Consensus       142 ~~~pC~n~g~C~~~~~~~~~~C~C~~g~~G~~Ce~~--~~~C~~~~C~~-g~C~~~~-~~~~C~C~~g-~~G~~Ce~~~~  216 (834)
                       ++||.|+|+|....  ++|+|.|.+||+|++||.+  ...|.+.-|.| |+|++.. ++|.|.||.| |++++||.   
T Consensus      1244 -s~pC~nng~C~srE--ggYtCeCrpg~tGehCEvs~~agrCvpGvC~nggtC~~~~nggf~c~Cp~ge~e~prC~v--- 1317 (2531)
T KOG4289|consen 1244 -SGPCGNNGRCRSRE--GGYTCECRPGFTGEHCEVSARAGRCVPGVCKNGGTCVNLLNGGFCCHCPYGEFEDPRCEV--- 1317 (2531)
T ss_pred             -cCCCCCCCceEEec--CceeEEecCCccccceeeecccCccccceecCCCEEeecCCCceeccCCCcccCCCceEE---
Confidence             99999999999875  9999999999999999975  46799999997 7999987 8899999999 99999986   


Q ss_pred             ccccCCCCcceEEcCCCCCcceEEEEEEEcccCCCceEEEeecccCCCCCCeEEEEEecCeEEEEEecCCCcceecCCCC
Q psy9228         217 ILQPAFKHGSYLAYPTPKTMRKFKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKHMEFRFDTGSATPLYSNDAP  296 (834)
Q Consensus       217 ~~~~~F~g~~y~~~~~~~~~~~~~i~l~f~t~~~~~glll~~~~~~~~~~d~~~l~l~~G~v~~~~~~g~~~~~~~~~~~  296 (834)
                       ++.+|.+.||+.+.......++.++|+|.|. ..+|||+|+++.   ..||++|++.+++++++|..|......+    
T Consensus      1318 -~trSFp~~sfv~frglrqRfh~TlslsfaT~-~~nGlL~ynGne---khDFvalevVd~qvqltfS~Ges~t~v~---- 1388 (2531)
T KOG4289|consen 1318 -TTRSFPPESFVTFRGLRQRFHFTLSLSFATI-ERNGLLLYNGNE---KHDFVALEVVDEQVQLTFSAGESTTTVS---- 1388 (2531)
T ss_pred             -EeeccCchheEEEeccccceEEEEEEEEEEe-eecceEEecCCc---ccceEeeeeeeeeEEEEEecccccceec----
Confidence             4799999999999998888889999999999 699999999943   5799999999999999999886421000    


Q ss_pred             CcccccceeccCCCeEEEEecCCCCCCceeeeeecCCCceeccccccccccccccccccCCCceEEEEeCCCCceeEeeE
Q psy9228         297 AFNPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPS  376 (834)
Q Consensus       297 ~~~~~~~~~~~~~~~v~l~vd~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~  376 (834)
                                                                                                      
T Consensus      1389 -------------------------------------------------------------------------------- 1388 (2531)
T KOG4289|consen 1389 -------------------------------------------------------------------------------- 1388 (2531)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EeeeeccccccCCCcccccccCCccccceeEEEEEEEeeCCCCeeEEEeccCCccccCCCCCeEEEEEECcEEEEEEecc
Q psy9228         377 ILLVTDSVPLFTQKPLSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVG  456 (834)
Q Consensus       377 ~~~~~~~~~~f~~~~~s~l~~~~~~~~~~~~~i~~~frt~~~~GlLl~~~~~~~~~~~~~~d~~~l~L~~G~l~~~~~~G  456 (834)
                                                                                                      
T Consensus      1389 -------------------------------------------------------------------------------- 1388 (2531)
T KOG4289|consen 1389 -------------------------------------------------------------------------------- 1388 (2531)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cEEEEeeeeecCCCeEEEEEEEECCeEEEEECCeeeeee-------------ecCCCccccccCCCceeeccccCCCccc
Q psy9228         457 LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVG-------------STPGEKLQVLNLRTPLYLGGYNIYHVTP  523 (834)
Q Consensus       457 ~~~i~s~~~~~dg~wH~V~v~~~~~~~~l~VD~~~~~~~-------------~~~g~~~~~l~~~~~l~iGG~~~~~~~~  523 (834)
                         -.-+..++||+||+|.+.+..+...+.||++.....             ...++ -..|++.++|++||+|....  
T Consensus      1389 ---p~Vp~gvsDGqWHtV~l~YyNK~av~svDdCdt~~al~fg~~gNCAa~g~q~~s-KKsLDltgpLlLGGvPe~fp-- 1462 (2531)
T KOG4289|consen 1389 ---PDVPGGVSDGQWHTVQLEYYNKVAVVSVDDCDTNVALRFGTIGNCAAQGTQTGS-KKSLDLTGPLLLGGVPETFP-- 1462 (2531)
T ss_pred             ---CCCCCCcccCceeEEEEEEeceEEEEEeccccccceeeecCccchHhhhhccCc-ceeeeccCceeecCCCCcch--
Confidence               001246899999999999999999999998764322             12233 45689999999999996431  


Q ss_pred             CcCcccccCceeEEeeeEEcCeeeeecccccccCCcccCCCCCCCCCCCCCCCCCCCeecccCCCCCceeeecCCCCCCC
Q psy9228         524 SLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANIMDCSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGD  603 (834)
Q Consensus       524 ~~~~~~~~gF~GCi~~v~ing~~~~~~~~~~~~~~~~~C~~~~~~~~C~~~pC~ngg~C~~~~~~~~~~~C~C~~G~~G~  603 (834)
                          ...+.|.|||+++.++++.+|+...........+|..                                       
T Consensus      1463 ----v~~k~FvGCmrdLsvD~~~VDma~fianngt~eGC~a--------------------------------------- 1499 (2531)
T KOG4289|consen 1463 ----VIEKQFVGCMRDLSVDGRDVDMATFIANNGTHEGCKA--------------------------------------- 1499 (2531)
T ss_pred             ----hhHhHhhhhhhhcccccccccHHHHHhhcCcccCchh---------------------------------------
Confidence                2346799999999999999999876544444455543                                       


Q ss_pred             CCccCccCCCCCCccCCCceeeecCCCcEEcCCCCCCCCCcccccccceeeEEcCCceeeechhhhhhccCcceEEEEEE
Q psy9228         604 HCEKENNMCMKGDVCKNGGMCKVTPDSYECLCSLGYAPPNCAKRVSIGSEVHFLGEGYVELKKELIEERRNEETIAFDFV  683 (834)
Q Consensus       604 ~Ce~~~~~C~~~~pC~ngg~C~~~~~~~~C~C~~g~~G~~Ce~~~~~~~~~~F~g~s~~~~~~~~~~~~~~~~~i~~~fr  683 (834)
                          ..+-|.+. +|+|+|+|++.|++|.|.||.+|.|..|+..+.  ..-+|.|.|-++.....+ .....+.++|+||
T Consensus      1500 ----rk~fCdsg-~C~n~g~CvnrWg~~~C~CP~~fggk~c~~~m~--~pq~frG~sl~sw~~~~~-~vSvPwylsl~FR 1571 (2531)
T KOG4289|consen 1500 ----RKNFCDSG-QCSNGGTCVNRWGGFSCECPLGFGGKGCCQGMA--HPQHFRGHSLVSWEGLPS-QVSVPWYLSLMFR 1571 (2531)
T ss_pred             ----hhcccCCC-ccCCCCeeecccCcEeecCccccCCcchhhccC--CchhccccceeeecCCCc-ceecceEEEEEEE
Confidence                23566666 788888888888888888888888888877664  456899988777653322 2347899999999


Q ss_pred             eCCCCeeEEecCCCCCCCCCCcceEEEEEECCEEEEEEEcCCcEEEEEeCCceecCCCcEEEEEEEECCEEEEEEcCeee
Q psy9228         684 TDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIV  763 (834)
Q Consensus       684 T~~~~GlLl~~~~~~~~~~~~~~~~~l~l~~G~l~~~~~~g~~~~~l~~s~~~~nDg~wH~V~i~r~~~~~~l~VD~~~~  763 (834)
                      |+..+|+||-+....      ..-+.|.|.+|.|.+.+  +...  +..+..+++||+||++.|..... ..+..|...-
T Consensus      1572 Tr~ad~vl~~~~~~~------rst~~lqld~g~l~~~v--~~s~--v~L~~~~vtdg~Wh~~~i~l~~d-~~~t~d~g~~ 1640 (2531)
T KOG4289|consen 1572 TRRADGVLMQAEFGG------RSTYNLQLDDGTLKYNV--GDSS--VELPAPRVTDGHWHHLVIELEAD-SVATLDYGIY 1640 (2531)
T ss_pred             eeccccEEEEEEeCC------CceEEEEEcCCEEEEEe--cCce--EEccCccccCCchhheeeeeccC-eEEEEechhh
Confidence            999999999876532      34588999999999876  4433  33468899999999999998864 5566665443


Q ss_pred             ecccCCCCccceecCCceEEcCcCCCCCCCCCccCCCceEEEEEEEECCceeccc
Q psy9228         764 GKGESPGSQDVINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNIHIQNKHISNI  818 (834)
Q Consensus       764 ~~~~~~~~~~~l~~~~~lyiGG~p~~~~~~~~~~~~~F~GCi~~v~in~~~~~~l  818 (834)
                      +.+...+ ..-|++ ..||+||+|..      ....+|+|||++|.+.|..++..
T Consensus      1641 ~aea~~g-l~gl~l-~sl~vGgap~~------g~p~gf~GCiqgV~v~g~~~l~~ 1687 (2531)
T KOG4289|consen 1641 QAEAKAG-LSGLNL-ESLYVGGAPAT------GVPRGFRGCIQGVRVGGVSILVP 1687 (2531)
T ss_pred             hhhhhcC-CCCcee-eEEEEccccCC------CccccchhhhhceEECCEeeccc
Confidence            3322222 223333 37999999944      35689999999999998765443

>KOG3516|consensus

Probab=100.00  E-value=4.2e-50  Score=447.57  Aligned_cols=565  Identities=21%  Similarity=0.330  Sum_probs=412.4

Q ss_pred             cccCCCCcceEEcCCCCCc---ceEEEEEEEcccCCCceEEEeecccCCCCCCeEEEEEecCeEEEEEecCCCc-c-e--
Q psy9228         218 LQPAFKHGSYLAYPTPKTM---RKFKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKHMEFRFDTGSAT-P-L--  290 (834)
Q Consensus       218 ~~~~F~g~~y~~~~~~~~~---~~~~i~l~f~t~~~~~glll~~~~~~~~~~d~~~l~l~~G~v~~~~~~g~~~-~-~--  290 (834)
                      ....|+|.+++.|+.....   ....|+|+|||. ..+|+|||...   .++||+.|+|+++++.+.+++|+.. + .  
T Consensus       178 ~vi~fdg~s~~~yr~~~~~m~s~~d~is~~Fkt~-~sdGvllh~eg---~QGd~itlql~~~kl~l~ld~G~~~~~~s~~  253 (1306)
T KOG3516|consen  178 PVIYFDGSSSLLYRFHRKLMSSLKDVISLKFKTM-QSDGVLLHGEG---QQGDYITLQLIGGKLVLILDLGNSKLPSSRT  253 (1306)
T ss_pred             ceeEECCccceeeeccccccccccceeEEEEEee-ccceeEEEccc---CCCCEEEEEEeCCEEEEEEecCCccCccccC
Confidence            3578999999998875433   456799999999 58899999874   3589999999999999999999653 1 1  


Q ss_pred             ----ecCCCCC-cccccceeccCCCeEEEEecCCCC---CCceeeeeecCCCceeccccccccccccccccccCCCceEE
Q psy9228         291 ----YSNDAPA-FNPVSTKEAPYGSKITLTCNNDLE---APVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYV  362 (834)
Q Consensus       291 ----~~~~~~~-~~~~~~~~~~~~~~v~l~vd~~~~---~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~  362 (834)
                          ......+ .+||.++..|.++.++++||..+.   +..++.  ....+..+++||.|........     ...+-+
T Consensus       254 ~~sis~GslLdD~hWHsV~i~r~~~~vnftvD~~~~~fr~~Ge~~--~Ldld~e~~~GGiP~~~~~~~~-----~~nF~G  326 (1306)
T KOG3516|consen  254 PTSISAGSLLDDQHWHSVRIERQGRQVNFTVDGVVHHFRATGEFD--ALDLDTEISFGGIPNDGKSVGF-----EKNFTG  326 (1306)
T ss_pred             cceeecccccCCCcceEEEEEecCcEEEEEEccceEeecccCccc--eeecceEEEECCccCCCcccce-----eeeeee
Confidence                1112223 355667788999999999998753   333332  2223445677887643221100     123445


Q ss_pred             EEeCC-------CCceeEee-EE-------ee--eeccccccCCCcccccccCCccccceeEEEEEEEeeCCCCeeEEEe
Q psy9228         363 CKVSN-------KDMTVEIP-SI-------LL--VTDSVPLFTQKPLSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYT  425 (834)
Q Consensus       363 C~~~~-------~~~~~~~~-~~-------~~--~~~~~~~f~~~~~s~l~~~~~~~~~~~~~i~~~frt~~~~GlLl~~  425 (834)
                      |+.++       .++.+.-+ ..       ..  .+..+|++|+.+.||+.+|+.... ..+.++|.|||...+|+|++.
T Consensus       327 Cienly~N~vdiidLa~~~~~~~~~~gnv~f~C~~P~~~pvtF~~sss~~~lpg~~~~-~~l~vSF~FRtw~~~G~ll~~  405 (1306)
T KOG3516|consen  327 CLENLYYNGVDIIDLAKRRKSQISAMGNVSFSCSDPQIIPVTFGNSSSYLRLPGNPNP-DRLSVSFQFRTWNKTGLLLFS  405 (1306)
T ss_pred             eeeeeeecCceeEeeecccccceecccceeEeccCCCCCCeEecccceeEEcCCCCCC-CceeeEEEEEeccccCceeee
Confidence            55443       22222111 00       11  134567888888899999988654 358999999999999999998


Q ss_pred             ccCCccccCCCCCeEEEEEECcEEEEEEe-ccc--EEEEeeeeecCCCeEEEEEEEECCeEEEEECCeeeeeeecCCCcc
Q psy9228         426 GDSNMKSYKGKGDFVSFGLEDGYPVFRFD-VGL--VVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKL  502 (834)
Q Consensus       426 ~~~~~~~~~~~~d~~~l~L~~G~l~~~~~-~G~--~~i~s~~~~~dg~wH~V~v~~~~~~~~l~VD~~~~~~~~~~g~~~  502 (834)
                      .-      ......+.|.|++|++.+.+. .+.  ..+.....+|||+||.|.+.+..+.+.+.||+.+......  .+.
T Consensus       406 ~~------~e~~g~v~~fl~eg~~~~~i~~~~r~~~~~~~g~~lnDG~WHsv~~~ak~n~~~~~iDd~~~~~~~~--~~p  477 (1306)
T KOG3516|consen  406 EL------KEGSGEVLLFLKEGKKFLQITQIGRSKADAYAGLKLNDGAWHSVSFNAKKNRLVLMIDDGEAEIAPD--SKP  477 (1306)
T ss_pred             ee------ccCCceEEEEEeCCeEEEEEeccccchhhhcccccCCCCceEEEEEEeecceeEEEEcCcccccccC--Ccc
Confidence            64      356789999999999877763 342  4455678899999999999999999999999977643221  112


Q ss_pred             ccccCCCceeeccccCCCcccCcCcccccCceeEEeeeEEcCeeeeeccccc------ccCCcccCCCCCCCCCCCCCCC
Q psy9228         503 QVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAV------DSANIMDCSDLESSPVCAPKPC  576 (834)
Q Consensus       503 ~~l~~~~~l~iGG~~~~~~~~~~~~~~~~gF~GCi~~v~ing~~~~~~~~~~------~~~~~~~C~~~~~~~~C~~~pC  576 (834)
                      ..+......|+||.|.... ........++|.||++-|.++++.+++.....      ....+..|..   .+.|.+|||
T Consensus       478 ~~V~tg~tY~fgg~~~~~~-~~~~~~~~~~f~GCmrli~vd~~~~~l~~v~~~~~g~~~~v~id~C~i---~drClPN~C  553 (1306)
T KOG3516|consen  478 LQVYTGTTYYFGGCPDKFN-SWQCASPIKGFQGCMRLIKVDGQLKDLIDVKQGSLGNFSDVQIDMCGI---SDRCLPNPC  553 (1306)
T ss_pred             EEEEeCCeeEecccccccc-chhhccccccccceeEEEEECCeEeeeeeeeccccccccceeeccccc---ccccCCccc
Confidence            3445567789999988521 22233456799999999999999888765211      1122456665   789999999


Q ss_pred             CCCCeecccCCCCCceeeecC-CCCCCCCCccCcc--CCCCC--------------------------------------
Q psy9228         577 QNYGICYPTDTSERGYNCSCL-TGYSGDHCEKENN--MCMKG--------------------------------------  615 (834)
Q Consensus       577 ~ngg~C~~~~~~~~~~~C~C~-~G~~G~~Ce~~~~--~C~~~--------------------------------------  615 (834)
                      +|||.|...|.   .|.|.|. +||+|..|+..+.  .|+..                                      
T Consensus       554 ehgG~C~Qs~~---~f~C~C~~TGY~GatCHtsi~e~SCeay~~~~~t~~~~~iD~DGsGpl~Pl~v~C~~~ed~awTvv  630 (1306)
T KOG3516|consen  554 EHGGKCSQSWD---DFECNCELTGYKGATCHTSIYELSCEAYKNIGQTSGNFLIDSDGSGPLEPLQVYCNITEDRAWTVV  630 (1306)
T ss_pred             cCCCccccccc---ceeEeccccccccccccCCCcchhhHHhhhhccccceEEEccCCCCcccceEEEEecccCceEEEE
Confidence            99999999998   9999999 9999999998654  35321                                      


Q ss_pred             --------------------------------------------------------------------------------
Q psy9228         616 --------------------------------------------------------------------------------  615 (834)
Q Consensus       616 --------------------------------------------------------------------------------  615 (834)
                                                                                                      
T Consensus       631 ~H~~~~~t~V~g~n~~g~~~~s~~y~as~eQ~~al~n~se~CeQ~i~y~C~~sRllnt~~g~P~Swwigr~ne~~~yWGG  710 (1306)
T KOG3516|consen  631 QHDNLGTTRVRGSNPEGPVAISLFYAASMEQLQALLNRSEHCEQEIEYSCRESRLLNTPDGTPFSWWIGRSNEGHVYWGG  710 (1306)
T ss_pred             EeCCccceEEeccCCCCceeEeeehhccHHHHHHHhhhhhhhheeeeeeeccceeeeCCCCCeeEEEecccCCccceecC
Confidence                                                                                            


Q ss_pred             -------CccCCCceeeecCCCcEEcCCCCCC-------------------------------------CCCcccccccc
Q psy9228         616 -------DVCKNGGMCKVTPDSYECLCSLGYA-------------------------------------PPNCAKRVSIG  651 (834)
Q Consensus       616 -------~pC~ngg~C~~~~~~~~C~C~~g~~-------------------------------------G~~Ce~~~~~~  651 (834)
                             --|.-.+.|++  ..+.|.|..+..                                     +.+|+.+....
T Consensus       711 s~Pg~qkC~Cgi~~nC~d--~~~~CNCDa~~~ewt~Dtg~l~~k~hLPVt~vv~gdTg~~~sea~~~lgPLrC~gDr~~w  788 (1306)
T KOG3516|consen  711 SGPGLQKCECGLLGNCLD--PQLYCNCDADEKEWTTDTGCLAYKDHLPVTQVVIGDTGRSQSEAPYVLGPLRCEGDRNFW  788 (1306)
T ss_pred             CCCccceeeccccccccC--cceeeeccCCCccccccccccchhhcCCeeEEEEccCCCcccccceeecceEeecccccc
Confidence                   01444455543  356677754321                                     12477777777


Q ss_pred             eeeEEcC-CceeeechhhhhhccCcceEEEEEEeCCCCeeEEecCCCCCCCCCCcceEEEEEE-CCEEEEEEEcCCcEEE
Q psy9228         652 SEVHFLG-EGYVELKKELIEERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVV-NGYLEYSYDLGDGVVT  729 (834)
Q Consensus       652 ~~~~F~g-~s~~~~~~~~~~~~~~~~~i~~~frT~~~~GlLl~~~~~~~~~~~~~~~~~l~l~-~G~l~~~~~~g~~~~~  729 (834)
                      .+++|.+ .+|+.|+...   .....+|+|.|||..+.|++|.+-+.       .|||.|+|. .-.+.|.++.|+++..
T Consensus       789 nsvSF~~~~syL~fp~f~---~~~saDIsf~FrTt~~~gvflen~g~-------~dfir~eL~~~~~vtf~~dvgnGp~~  858 (1306)
T KOG3516|consen  789 NSVSFHTGASYLHFPPFH---NELSADISFFFRTTASSGVFLENHGI-------NDFIRLELSSPVEVTFAFDVGNGPSQ  858 (1306)
T ss_pred             cceEeecCcceeecCccc---CcccccEEEEEEecCCceEeeeccCC-------CceEEEEEcCCCceEEEEEcCCCcee
Confidence            7899986 6799997543   24788999999999999999988764       699999998 6789999999999876


Q ss_pred             EEe-CCceecCCCcEEEEEEEECCEEEEEEcCeeeecccCC-CCccceecCCceEEcCcCCCCCCCCCccCCCceEEEEE
Q psy9228         730 IKF-SKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESP-GSQDVINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMN  807 (834)
Q Consensus       730 l~~-s~~~~nDg~wH~V~i~r~~~~~~l~VD~~~~~~~~~~-~~~~~l~~~~~lyiGG~p~~~~~~~~~~~~~F~GCi~~  807 (834)
                      +.. ++..+||++||+|+++|+.+.++|+||+.+.....++ .....|.+.+++||||...        ...+|.||||.
T Consensus       859 ~~V~s~t~~nD~qWH~V~~Ern~K~a~LqVD~~~~~~r~sp~~~~~~L~l~s~l~vGgt~~--------~~~gF~GCIRs  930 (1306)
T KOG3516|consen  859 LTVRSPTELNDNQWHQVRAERNSKEASLQVDGLPKSIRTSPIPGTRLLQLYSSLFVGGTVS--------RQRGFLGCIRS  930 (1306)
T ss_pred             EEEcCCcccCCCceEEEEEEeccccceEEEcCcccceecCCCCCEEEEEeccceecccccc--------CcCcceeeeee
Confidence            653 5568999999999999999999999999886655444 3356788999999999543        36799999999


Q ss_pred             EEECCceecccCCCCCCCccccc
Q psy9228         808 IHIQNKHISNIGSSASSGLHVMP  830 (834)
Q Consensus       808 v~in~~~~~~l~~~a~~~~nv~~  830 (834)
                      |+|||+ .+||+..|.....|.|
T Consensus       931 l~LNGv-~ldLe~ra~~~~gv~~  952 (1306)
T KOG3516|consen  931 LQLNGV-MLDLEYRAYGTAGVSP  952 (1306)
T ss_pred             eeecce-eeeehhhhccCCcccC
Confidence            999997 5688776655555544

>KOG3516|consensus

Probab=100.00  E-value=2.6e-47  Score=425.29  Aligned_cols=606  Identities=22%  Similarity=0.355  Sum_probs=389.2

Q ss_pred             eeeeeCCCCCCCcCCCCccCCCCccceEEEEEEcCEEEEeecccccc------cCCCCC---CccCCCCCCCCCCCCEec
Q psy9228          83 ELVYIGAVPDFGEIHPSAGFSNGFKGCVSRLKYNKTEFELFKMAVER------VGVDSC---NTCKSSKHNNCINNGLCQ  153 (834)
Q Consensus        83 ~~~~~gg~p~~~~~~~~~~~~~gf~gCi~~~~~~~~~~~~~~~~~~~------~~~~~c---~~C~~~~~~pC~n~g~C~  153 (834)
                      ..-|+||.|.......-.....+|.||++.++++++..++......+      ..+..|   |.|.   +|||+|||.|.
T Consensus       484 ~tY~fgg~~~~~~~~~~~~~~~~f~GCmrli~vd~~~~~l~~v~~~~~g~~~~v~id~C~i~drCl---PN~CehgG~C~  560 (1306)
T KOG3516|consen  484 TTYYFGGCPDKFNSWQCASPIKGFQGCMRLIKVDGQLKDLIDVKQGSLGNFSDVQIDMCGISDRCL---PNPCEHGGKCS  560 (1306)
T ss_pred             CeeEeccccccccchhhccccccccceeEEEEECCeEeeeeeeeccccccccceeecccccccccC---CccccCCCccc
Confidence            45689999886433333456789999999999999998876532222      224456   6899   99999999999


Q ss_pred             cCCCCCceEeeCC-CCCCCCCCCCCCCCccCCCCCCCeeecCCCCeEEeCCCCcccCcccccccccccCCCCcce-EEcC
Q psy9228         154 DAATRIGYTCICP-PGFSGDRCSVLGEPCYPGACGDGSCQDVDGAMKCLCPIGTAGKRCEQKIKILQPAFKHGSY-LAYP  231 (834)
Q Consensus       154 ~~~~~~~~~C~C~-~g~~G~~Ce~~~~~C~~~~C~~g~C~~~~~~~~C~C~~g~~G~~Ce~~~~~~~~~F~g~~y-~~~~  231 (834)
                      ..  |..|.|.|. .||.|..|+..+.|                            ..||.=.   ...+.+.-| +-..
T Consensus       561 Qs--~~~f~C~C~~TGY~GatCHtsi~e----------------------------~SCeay~---~~~~t~~~~~iD~D  607 (1306)
T KOG3516|consen  561 QS--WDDFECNCELTGYKGATCHTSIYE----------------------------LSCEAYK---NIGQTSGNFLIDSD  607 (1306)
T ss_pred             cc--ccceeEeccccccccccccCCCcc----------------------------hhhHHhh---hhccccceEEEccC
Confidence            84  589999999 99999999865433                            1233211   011111111 1111


Q ss_pred             CCCCcceEEEEEEEcccCCCceEEEeecccCCCCCCeEEEEEecCeEEEEEecCCCc-ceecCCCCCcccccceeccCCC
Q psy9228         232 TPKTMRKFKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKHMEFRFDTGSAT-PLYSNDAPAFNPVSTKEAPYGS  310 (834)
Q Consensus       232 ~~~~~~~~~i~l~f~t~~~~~glll~~~~~~~~~~d~~~l~l~~G~v~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~  310 (834)
                      .......+.+...+... ...-++-+....    ..-+.-...+|.+...+..+... .+..... ..+++       ..
T Consensus       608 GsGpl~Pl~v~C~~~ed-~awTvv~H~~~~----~t~V~g~n~~g~~~~s~~y~as~eQ~~al~n-~se~C-------eQ  674 (1306)
T KOG3516|consen  608 GSGPLEPLQVYCNITED-RAWTVVQHDNLG----TTRVRGSNPEGPVAISLFYAASMEQLQALLN-RSEHC-------EQ  674 (1306)
T ss_pred             CCCcccceEEEEecccC-ceEEEEEeCCcc----ceEEeccCCCCceeEeeehhccHHHHHHHhh-hhhhh-------he
Confidence            11222334443333111 011111111100    11122222333333222222211 0000000 00111       12


Q ss_pred             eEEEEecCCC----CCCceee-eeecCCCceeccccc-cccccccccccccCCCceEEEEeCCCC--------ce---eE
Q psy9228         311 KITLTCNNDL----EAPVEYT-WSKRSNGHVLPFGAF-SRENTLTLQEIKNSDAGMYVCKVSNKD--------MT---VE  373 (834)
Q Consensus       311 ~v~l~vd~~~----~~~~~~~-~~~~~~~~~~~~gg~-~~~~~~~~~~~~~~~~~~~~C~~~~~~--------~~---~~  373 (834)
                      .+.+.|-...    ..-..++ |..+...+..|.||. |+.....+.-..+.....+.|.|....        +.   ..
T Consensus       675 ~i~y~C~~sRllnt~~g~P~Swwigr~ne~~~yWGGs~Pg~qkC~Cgi~~nC~d~~~~CNCDa~~~ewt~Dtg~l~~k~h  754 (1306)
T KOG3516|consen  675 EIEYSCRESRLLNTPDGTPFSWWIGRSNEGHVYWGGSGPGLQKCECGLLGNCLDPQLYCNCDADEKEWTTDTGCLAYKDH  754 (1306)
T ss_pred             eeeeeeccceeeeCCCCCeeEEEecccCCccceecCCCCccceeeccccccccCcceeeeccCCCccccccccccchhhc
Confidence            2333332211    0113344 344555556666655 444443332222222333455543211        00   00


Q ss_pred             eeEE-------------e--e----eec-----cccccCCCcccccccCCccccceeEEEEEEEeeCCCCeeEEEeccCC
Q psy9228         374 IPSI-------------L--L----VTD-----SVPLFTQKPLSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSN  429 (834)
Q Consensus       374 ~~~~-------------~--~----~~~-----~~~~f~~~~~s~l~~~~~~~~~~~~~i~~~frt~~~~GlLl~~~~~~  429 (834)
                      .|..             .  .    .++     ..++.|....|||.||++.... ...|+|.|||+.++|++|.+-   
T Consensus       755 LPVt~vv~gdTg~~~sea~~~lgPLrC~gDr~~wnsvSF~~~~syL~fp~f~~~~-saDIsf~FrTt~~~gvflen~---  830 (1306)
T KOG3516|consen  755 LPVTQVVIGDTGRSQSEAPYVLGPLRCEGDRNFWNSVSFHTGASYLHFPPFHNEL-SADISFFFRTTASSGVFLENH---  830 (1306)
T ss_pred             CCeeEEEEccCCCcccccceeecceEeecccccccceEeecCcceeecCcccCcc-cccEEEEEEecCCceEeeecc---
Confidence            1100             0  0    001     1234566778999999886543 588999999999999999984   


Q ss_pred             ccccCCCCCeEEEEEECc-EEEEEEecc----cEEEEeeeeecCCCeEEEEEEEECCeEEEEECCeeeeeeecCCCcccc
Q psy9228         430 MKSYKGKGDFVSFGLEDG-YPVFRFDVG----LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQV  504 (834)
Q Consensus       430 ~~~~~~~~d~~~l~L~~G-~l~~~~~~G----~~~i~s~~~~~dg~wH~V~v~~~~~~~~l~VD~~~~~~~~~~g~~~~~  504 (834)
                           +..||+.|+|..+ .+.|.++.|    ..+++++..+||++||+|.++|+.+..+|+||+.+....++|-.....
T Consensus       831 -----g~~dfir~eL~~~~~vtf~~dvgnGp~~~~V~s~t~~nD~qWH~V~~Ern~K~a~LqVD~~~~~~r~sp~~~~~~  905 (1306)
T KOG3516|consen  831 -----GINDFIRLELSSPVEVTFAFDVGNGPSQLTVRSPTELNDNQWHQVRAERNSKEASLQVDGLPKSIRTSPIPGTRL  905 (1306)
T ss_pred             -----CCCceEEEEEcCCCceEEEEEcCCCceeEEEcCCcccCCCceEEEEEEeccccceEEEcCcccceecCCCCCEEE
Confidence                 4689999999877 588899887    367788889999999999999999999999999888776666655677


Q ss_pred             ccCCCceeeccccCCCcccCcCcccccCceeEEeeeEEcCeeeeecccccccCCc-ccCCCCCCCCCCCCCCCCCCCeec
Q psy9228         505 LNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANI-MDCSDLESSPVCAPKPCQNYGICY  583 (834)
Q Consensus       505 l~~~~~l~iGG~~~~~~~~~~~~~~~~gF~GCi~~v~ing~~~~~~~~~~~~~~~-~~C~~~~~~~~C~~~pC~ngg~C~  583 (834)
                      |.+..++|+||....          ..+|.||||.+.+||+.+||...+....++ .+|..                   
T Consensus       906 L~l~s~l~vGgt~~~----------~~gF~GCIRsl~LNGv~ldLe~ra~~~~gv~~GC~G-------------------  956 (1306)
T KOG3516|consen  906 LQLYSSLFVGGTVSR----------QRGFLGCIRSLQLNGVMLDLEYRAYGTAGVSPGCEG-------------------  956 (1306)
T ss_pred             EEeccceeccccccC----------cCcceeeeeeeeecceeeeehhhhccCCcccCCCcc-------------------
Confidence            899999999995542          479999999999999999997665444443 34542                   


Q ss_pred             ccCCCCCceeeecCCCCCCCCCccCccCCCCCCccCCCceeeecCCCcEEcCCC-CCCCCCcccccccceeeEEcCCcee
Q psy9228         584 PTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDSYECLCSL-GYAPPNCAKRVSIGSEVHFLGEGYV  662 (834)
Q Consensus       584 ~~~~~~~~~~C~C~~G~~G~~Ce~~~~~C~~~~pC~ngg~C~~~~~~~~C~C~~-g~~G~~Ce~~~~~~~~~~F~g~s~~  662 (834)
                                                 .|.+. ||+|||+|+..+.+|+|+|.. .|+|+.|.+++    ++.|...+++
T Consensus       957 ---------------------------hCss~-~C~NGG~Cvery~gytCDCs~Tay~Gp~Cs~ei----g~~fe~gs~i 1004 (1306)
T KOG3516|consen  957 ---------------------------HCSSY-PCLNGGHCVERYDGYTCDCSRTAYDGPFCSKEI----GVFFERGSSI 1004 (1306)
T ss_pred             ---------------------------ccccc-cccCCCEEEEecCceeeccccCcCCCCcccccc----ceEecCCceE
Confidence                                       35555 777777777777788888886 78899998875    5778878888


Q ss_pred             eechhhhhh----------------ccCcceEEEEEEeCCCCeeEEecCCCCCCCCCCcceEEEEEE-CCEEEEEEEcCC
Q psy9228         663 ELKKELIEE----------------RRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVV-NGYLEYSYDLGD  725 (834)
Q Consensus       663 ~~~~~~~~~----------------~~~~~~i~~~frT~~~~GlLl~~~~~~~~~~~~~~~~~l~l~-~G~l~~~~~~g~  725 (834)
                      +|+......                ......|.|.|+|+...++|||.+...      .+|++|-|. ||.|+++|.+|.
T Consensus      1005 ~y~fq~~~~~a~~~~~~~~~~~~~~~~~~e~i~~sftTt~~ps~LLfvssF~------~~y~~V~v~~nGsLq~ry~lg~ 1078 (1306)
T KOG3516|consen 1005 RYNFQKPMRSAVFESSRVKQKLEIEINPNEEINFSFTTTRAPSDLLFVSSFT------DDYLAVLVKDNGSLQTRYMLGF 1078 (1306)
T ss_pred             EEeccchHHHhhhhhhhhhhccccccCccceEEEEEEeccCceEEEEeeccc------cceEEEEEeCCCceEEEEecCC
Confidence            886321110                015678999999999999999987643      689999997 999999999998


Q ss_pred             -cEEEEEeCCceecCCCcEEEEEEEECCEEEEEEcCeeeecccCCCCccceecCCceEEcCcCCCCCCC---CCccCCCc
Q psy9228         726 -GVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPNMDLMT---GGRYVHPM  801 (834)
Q Consensus       726 -~~~~l~~s~~~~nDg~wH~V~i~r~~~~~~l~VD~~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~~~~---~~~~~~~F  801 (834)
                       .+.++....+++.||+.|+|.|.|.++.+.++||+.......... ...++....+++|-+.......   ......+|
T Consensus      1079 ~e~~~~~~~~kn~~~gq~H~i~i~r~~~~~~i~vD~y~~~~y~~~~-~~~~~~~ksl~lg~v~e~~~~d~~~~k~~t~gF 1157 (1306)
T KOG3516|consen 1079 REPFEYQFKDKNIALGQPHDINITRGPRTVFLEVDGYLKVEYTFSI-DVDFQSPKSLTLGPVTETANIDHEISKYNTPGF 1157 (1306)
T ss_pred             cCceEEecccccccCCCceEEEEecCCceEEEEecCccceeeeccc-ceeecccchhhccceeeccCCChhHHhhcCCCc
Confidence             666777667789999999999999999999999997755443222 3445666667777655432221   12347889


Q ss_pred             eEEEEEEEECCce
Q psy9228         802 SGLMMNIHIQNKH  814 (834)
Q Consensus       802 ~GCi~~v~in~~~  814 (834)
                      .||+..|++|...
T Consensus      1158 ~GClS~Vqf~~va 1170 (1306)
T KOG3516|consen 1158 GGCLSRVQFNDVA 1170 (1306)
T ss_pred             cceeeEEEccccc
Confidence            9999999998865

>KOG3514|consensus

Probab=100.00  E-value=1.1e-41  Score=371.92  Aligned_cols=508  Identities=23%  Similarity=0.364  Sum_probs=338.9

Q ss_pred             cCCCC--cceEEcCCCCCcceEEEEEEEcccCCCceEEEeecccCCCCCCeEEEEEecCeEEEEEecCCCcc-eecCCCC
Q psy9228         220 PAFKH--GSYLAYPTPKTMRKFKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKHMEFRFDTGSATP-LYSNDAP  296 (834)
Q Consensus       220 ~~F~g--~~y~~~~~~~~~~~~~i~l~f~t~~~~~glll~~~~~~~~~~d~~~l~l~~G~v~~~~~~g~~~~-~~~~~~~  296 (834)
                      +.|.|  ++|..|+.-.....-.++|+|+|. +++|+|||..+  ++..||+.|.|++|+++++|++|.+.. .+.....
T Consensus        26 ~~l~Ga~~s~ary~kW~~~~~g~ls~e~kt~-q~~glllytDd--Ggt~df~eL~lveG~lrLrf~Lg~~~~~~q~~~~i  102 (1591)
T KOG3514|consen   26 IILTGAPDSYARYPKWAHSFEGSLSMELKTR-QSDGLLLYTDD--GGTHDFYELTLVEGHLRLRFRLGNSNEFGQRRVRI  102 (1591)
T ss_pred             eEecCCCcchhhchhhhcccCceeeeeeecc-CCCcEEEEecC--CCceeeeEEEEecceEEEEEEecCCCceeeeccee
Confidence            34444  477777765555566789999999 69999999974  456799999999999999999996543 3333334


Q ss_pred             Ccccccc-eeccCCCeEEEEecCCCCCC----ceeeeeecCCCceeccccccccccccc---------------------
Q psy9228         297 AFNPVST-KEAPYGSKITLTCNNDLEAP----VEYTWSKRSNGHVLPFGAFSRENTLTL---------------------  350 (834)
Q Consensus       297 ~~~~~~~-~~~~~~~~v~l~vd~~~~~~----~~~~~~~~~~~~~~~~gg~~~~~~~~~---------------------  350 (834)
                      ....||. .+.|..++..|.||....-.    .++..  ......+++||.|....+.+                     
T Consensus       103 ~D~~WH~v~i~r~~e~t~L~vDgv~~~~~~~~~~f~f--g~iasdvfVGGlP~~~~la~l~lp~v~yep~frg~~rnl~y  180 (1591)
T KOG3514|consen  103 DDDKWHTVTIFRSWENTKLEVDGVLVFKILNQRSFVF--GNIASDVFVGGLPNMHMLAVLSLPLVRYEPRFRGNVRNLMY  180 (1591)
T ss_pred             cCCceeEEEEEeccccceEEechhhhhhhhhcceeee--eeeehheeecCCChHHhhhhhcCcccccccccCccceeeee
Confidence            4444554 45566678888887633211    11111  11111345555552111000                     


Q ss_pred             ----------cccc-----c--------CCC--ceE------EEEeCCCCceeEeeEEeee-------eccccccCCCc-
Q psy9228         351 ----------QEIK-----N--------SDA--GMY------VCKVSNKDMTVEIPSILLV-------TDSVPLFTQKP-  391 (834)
Q Consensus       351 ----------~~~~-----~--------~~~--~~~------~C~~~~~~~~~~~~~~~~~-------~~~~~~f~~~~-  391 (834)
                                +.+.     +        ...  .-+      .|..+..+..++|..+...       .+...-|.+.. 
T Consensus       181 ~~~p~g~t~~q~l~~~~d~~c~d~~~~~~~~~~~~~~c~~~g~c~s~d~gp~c~c~~~~dgq~cekeK~~~eaTF~G~ef  260 (1591)
T KOG3514|consen  181 RQYPQGVTSPQLLEVGTDTNCDDHCKSKSMSSREQFVCLNDGECYSSDDGPHCDCQFDHDGQNCEKEKNDGEATFGGDEF  260 (1591)
T ss_pred             ecCCCCcCChhhhhcccCCCCcCCCCCccccccccceeccCCeEecCCCCCccccccccCccccccccCcceEEecCceE
Confidence                      0000     0        000  001      1222222333344432211       11222343332 


Q ss_pred             ccc-cccCCccccceeEEEEEEEeeCCCCeeEEEeccCCccccCCCCCeEEEEEECcEEEEEEeccc-----EEEEeeee
Q psy9228         392 LSY-LALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVGL-----VVLRSKVT  465 (834)
Q Consensus       392 ~s~-l~~~~~~~~~~~~~i~~~frt~~~~GlLl~~~~~~~~~~~~~~d~~~l~L~~G~l~~~~~~G~-----~~i~s~~~  465 (834)
                      .+| |...+..  ...-.|+|.|||.+++|||||.+.        ..||+.|.|+||.+.+...++.     ...-...+
T Consensus       261 ~~YDls~npI~--s~~d~itl~FrT~q~ngllfytG~--------~~dYlnlaL~dGaV~l~~~l~~g~~e~~~~p~~~r  330 (1591)
T KOG3514|consen  261 VGYDLSQNPIR--SKKDNITLTFRTVQGNGLLFYTGD--------EKDYLNLALQDGAVSLSSKLDGGDAEIIRMPNSFR  330 (1591)
T ss_pred             EEeeccCCccc--ccccceEEEEEEecCceeEEEccC--------CcceeeEeecCCcEEEEEecCCccceeEEcccccc
Confidence            233 2233332  234679999999999999999976        5799999999999999998862     22335678


Q ss_pred             ecCCCeEEEEEEEECCeEEEEECCeeeeeeecCCCccccccCCCceeeccccCCCcccCcCcccccCceeEEeeeEEcCe
Q psy9228         466 LVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGS  545 (834)
Q Consensus       466 ~~dg~wH~V~v~~~~~~~~l~VD~~~~~~~~~~g~~~~~l~~~~~l~iGG~~~~~~~~~~~~~~~~gF~GCi~~v~ing~  545 (834)
                      ++|.+||.|.++|....+++.||+.........+. ...|....-+|+||.+.....+    .....|.||+++|.+...
T Consensus       331 fdD~~WH~V~v~R~~~m~t~~VDg~~t~~~~~a~~-~tmlsss~~fyvgg~~~~~~l~----gsrVsF~GClkkV~y~~d  405 (1591)
T KOG3514|consen  331 FDDDSWHTVIVERSLQMMTLIVDGRRTEIRQYAPE-LTMLSSSDFFYVGGSPNTADLP----GSRVSFMGCLKKVVYKND  405 (1591)
T ss_pred             ccCCcceEEEEEeeeEEEEEEEccEEecccccccc-eeEeeccceEEecCCCCccccC----CCceeeeeeeeeeEeccC
Confidence            99999999999999999999999987766555555 6666666679999988743222    223349999999998654


Q ss_pred             eeeec--ccccccCCcccCCCCCCCCCCCCCCCCCCCeecccCCCCCceeeecCCCCCCCCCccCccCCCCCCccCCCce
Q psy9228         546 ELDLI--NSAVDSANIMDCSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGM  623 (834)
Q Consensus       546 ~~~~~--~~~~~~~~~~~C~~~~~~~~C~~~pC~ngg~C~~~~~~~~~~~C~C~~G~~G~~Ce~~~~~C~~~~pC~ngg~  623 (834)
                      .+.+.  .-+......                       +...                                     
T Consensus       406 ~~rl~L~~LAk~g~~~-----------------------~k~~-------------------------------------  425 (1591)
T KOG3514|consen  406 DTRLELSRLAKQGDSK-----------------------MKTE-------------------------------------  425 (1591)
T ss_pred             ceeehhhHHhhcCCce-----------------------eEee-------------------------------------
Confidence            43332  221111000                       0000                                     


Q ss_pred             eeecCCCcEEcCCCCCCCCCcccccccceeeEEcC-CceeeechhhhhhccCcceEEEEEEeCCCCeeEEecCCCCCCCC
Q psy9228         624 CKVTPDSYECLCSLGYAPPNCAKRVSIGSEVHFLG-EGYVELKKELIEERRNEETIAFDFVTDDKNALLLWNGQPSYKNG  702 (834)
Q Consensus       624 C~~~~~~~~C~C~~g~~G~~Ce~~~~~~~~~~F~g-~s~~~~~~~~~~~~~~~~~i~~~frT~~~~GlLl~~~~~~~~~~  702 (834)
                         ..-.|.|           |... ....+.|.. .+|+.++.|..   ++.-.|+|.|||..++|||||+....+   
T Consensus       426 ---G~l~y~C-----------~n~~-~~DpvtFtt~es~l~LP~Wnt---~~~gSiSf~FRTtepnGlil~~~g~~~---  484 (1591)
T KOG3514|consen  426 ---GDLSYSC-----------ENVA-QLDPVTFTTPESYLTLPRWNT---KKSGSISFDFRTTEPNGLILFHGGPQA---  484 (1591)
T ss_pred             ---ceEEEec-----------CCCC-ccCceeeecccceeecccccc---CCcceeEEEEeecCCCceEEEccCccc---
Confidence               0011211           1111 124678876 89999998864   478899999999999999999987543   


Q ss_pred             CCcceEEEEEECCEEEEEEEcCCcEEEEEeCCceecCCCcEEEEEEEECCEEEEEEcCeeeecccCCCCccceecCCceE
Q psy9228         703 IGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIY  782 (834)
Q Consensus       703 ~~~~~~~l~l~~G~l~~~~~~g~~~~~l~~s~~~~nDg~wH~V~i~r~~~~~~l~VD~~~~~~~~~~~~~~~l~~~~~ly  782 (834)
                      ...||++++|.||+|.+.+++|+|...|+.+..++|||.||+|.+.|.++.+++.||+...-. ..++....|+++++||
T Consensus       485 ~~~d~~A~ELldghlyl~ldlGSG~iklras~rkv~DGeWhhv~l~R~gR~gsvsVd~~~~df-~tpG~s~iL~ld~~my  563 (1591)
T KOG3514|consen  485 NATDYFAIELLDGHLYLLLDLGSGVIKLRASSRKVNDGEWHHVDLQRDGRTGSVSVDAIKTDF-STPGDSEILDLDDPMY  563 (1591)
T ss_pred             ccccEEEEEEeCCeEEEEEecCCceEEeeeecccccCCceEEEEeeccCccceEEEeeeecCc-cCCCcceeEeecCcee
Confidence            457999999999999999999999999987889999999999999999999999999976544 3567788999999999


Q ss_pred             EcCcCCCCCCCC----CccCCCceEEEEEEEECCceecccCCCC--CCCccccc
Q psy9228         783 LGGTPNMDLMTG----GRYVHPMSGLMMNIHIQNKHISNIGSSA--SSGLHVMP  830 (834)
Q Consensus       783 iGG~p~~~~~~~----~~~~~~F~GCi~~v~in~~~~~~l~~~a--~~~~nv~~  830 (834)
                      ||-++.....+.    .....+|+||||+|.|+|+ -.++.+.|  ..+..|.|
T Consensus       564 lG~~~n~l~~P~~vWta~L~~GyvGCirdl~i~G~-s~di~q~ae~q~sagvkp  616 (1591)
T KOG3514|consen  564 LGEVPNNLVYPSEVWTAALRKGYVGCIRDLFIDGV-STDIRQEAEAQNSAGVKP  616 (1591)
T ss_pred             eccCCCCccCcHHHHHHHHhccchheehhheecce-ehhhHHHhhhccccccCc
Confidence            997766532222    1458899999999999996 34555443  34455554

>KOG1219|consensus

Probab=100.00  E-value=8.6e-36  Score=342.68  Aligned_cols=301  Identities=30%  Similarity=0.614  Sum_probs=253.8

Q ss_pred             ceEeeCCCCCCCCCCCCCCCCccCCCCCCC-eeecCC--CCeEEeCCCCcccCcccccccccccCCCCcceEEcCCCCCc
Q psy9228         160 GYTCICPPGFSGDRCSVLGEPCYPGACGDG-SCQDVD--GAMKCLCPIGTAGKRCEQKIKILQPAFKHGSYLAYPTPKTM  236 (834)
Q Consensus       160 ~~~C~C~~g~~G~~Ce~~~~~C~~~~C~~g-~C~~~~--~~~~C~C~~g~~G~~Ce~~~~~~~~~F~g~~y~~~~~~~~~  236 (834)
                      .-.|.|+.||    |+...+.|...||..+ .|+...  ..|.|.||.|..| .|+-+   .+.++.|+||+.|..+...
T Consensus      3632 ~a~ClC~~G~----Cp~~~~~C~~~pcp~~~~Cvs~~~~~~~~cVcP~gr~g-~C~g~---~elS~tGnSYveyrlse~~ 3703 (4289)
T KOG1219|consen 3632 TAACLCNRGF----CPVETNQCAKSPCPAGNLCVSSVHNSTYTCVCPIGRFG-FCQGD---FELSSTGNSYVEYRLSENQ 3703 (4289)
T ss_pred             cceeeecCCc----CCcccCccccCCCcccCcccccccccceeEeccCcccc-cCCCc---ceEeecCceeEEEEccccc
Confidence            4579999998    9999999999999976 799775  5599999999544 57765   5789999999999987654


Q ss_pred             -ceEEEEEEEcccCCCceEEEeecccCCCCCCeEEEEEecCeEEEEEecCCCcceecCCCCCcccccceeccCCCeEEEE
Q psy9228         237 -RKFKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKHMEFRFDTGSATPLYSNDAPAFNPVSTKEAPYGSKITLT  315 (834)
Q Consensus       237 -~~~~i~l~f~t~~~~~glll~~~~~~~~~~d~~~l~l~~G~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~  315 (834)
                       ..+++.|+.+|. +.+|++||...     .+|..|.|.+|.+++.++.|+|.-                          
T Consensus      3704 n~~~kl~frLkT~-~sngIiM~tr~-----~d~~iLkLv~G~~~l~~~cgsG~G-------------------------- 3751 (4289)
T KOG1219|consen 3704 NTRMKLGFRLKTL-QSNGIIMYTRK-----TDLAILKLVGGSPQLLADCGSGPG-------------------------- 3751 (4289)
T ss_pred             ccceEEEEEEEec-ccCcEEEEEcC-----CceEEEEecCCcEEEEEecCCCCC--------------------------
Confidence             458899999999 69999999873     389999999999999999888631                          


Q ss_pred             ecCCCCCCceeeeeecCCCceeccccccccccccccccccCCCceEEEEeCCCCceeEeeEEeeeeccccccCCCccccc
Q psy9228         316 CNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKPLSYL  395 (834)
Q Consensus       316 vd~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~f~~~~~s~l  395 (834)
                                                                                                      
T Consensus      3752 -------------------------------------------------------------------------------- 3751 (4289)
T KOG1219|consen 3752 -------------------------------------------------------------------------------- 3751 (4289)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCccccceeEEEEEEEeeCCCCeeEEEeccCCccccCCCCCeEEEEEECcEEEEEEecccEEEE-eeeeecCCCeEEE
Q psy9228         396 ALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVGLVVLR-SKVTLVPHEWVVV  474 (834)
Q Consensus       396 ~~~~~~~~~~~~~i~~~frt~~~~GlLl~~~~~~~~~~~~~~d~~~l~L~~G~l~~~~~~G~~~i~-s~~~~~dg~wH~V  474 (834)
                                                                                     .+. ....++||+||.|
T Consensus      3752 ---------------------------------------------------------------ivg~q~~~VnDgqWHsi 3768 (4289)
T KOG1219|consen 3752 ---------------------------------------------------------------IVGSQKRTVNDGQWHSI 3768 (4289)
T ss_pred             ---------------------------------------------------------------cccccceEeecCceeEE
Confidence                                                                           000 1246899999999


Q ss_pred             EEEEECCeEEEEECCeeeeeeecCCCccccccCCCceeeccccCCCcccCcCcccccCceeEEeeeEEcCeeeeeccccc
Q psy9228         475 TIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAV  554 (834)
Q Consensus       475 ~v~~~~~~~~l~VD~~~~~~~~~~g~~~~~l~~~~~l~iGG~~~~~~~~~~~~~~~~gF~GCi~~v~ing~~~~~~~~~~  554 (834)
                      .+.|.++..+|.+|+........|+. ...|+++..+|+|+.-..  ......+...||.||+..+.+||..+++.....
T Consensus      3769 alerrr~~irlsvDd~~~~~atvPg~-~~tln~d~hiy~Ga~vrl--r~~~~tqvs~Gf~GCldsiyLng~el~l~~k~~ 3845 (4289)
T KOG1219|consen 3769 ALERRRNHIRLSVDDDTYDSATVPGM-KSTLNLDTHIYLGALVRL--RHQRSTQVSYGFDGCLDSIYLNGMELPLTRKGK 3845 (4289)
T ss_pred             EeeccCCceEEEEcccCceeeecccc-eeeccccceEEEeeEeee--ccCCCccccccccceeeeEEEccccccccCCCc
Confidence            99999999999999999888899988 888999999999997651  122334667899999999999999999987542


Q ss_pred             ------ccCCc-ccCCCCCCCCCCCCCCCCCCCeecccCCCCCceeeecCCCCCCCCCccCccCCCCCCccCCCceeeec
Q psy9228         555 ------DSANI-MDCSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVT  627 (834)
Q Consensus       555 ------~~~~~-~~C~~~~~~~~C~~~pC~ngg~C~~~~~~~~~~~C~C~~G~~G~~Ce~~~~~C~~~~pC~ngg~C~~~  627 (834)
                            ....+ .+|...  .++|..+||||||+|.....  ++|.|.|++-|+|++||++..+|.++ ||.+||+|+..
T Consensus      3846 s~a~~~el~~l~pgC~l~--~d~C~~npCqhgG~C~~~~~--ggy~CkCpsqysG~~CEi~~epC~sn-PC~~GgtCip~ 3920 (4289)
T KOG1219|consen 3846 SVAGLMELFGLQPGCSLL--TDPCNDNPCQHGGTCISQPK--GGYKCKCPSQYSGNHCEIDLEPCASN-PCLTGGTCIPF 3920 (4289)
T ss_pred             hhhhhhhhhccccccccc--ccccccCcccCCCEecCCCC--CceEEeCcccccCcccccccccccCC-CCCCCCEEEec
Confidence                  22233 356542  38999999999999998876  69999999999999999999999999 99999999999


Q ss_pred             CCCcEEcCCCCCCCCCcccc-cccc
Q psy9228         628 PDSYECLCSLGYAPPNCAKR-VSIG  651 (834)
Q Consensus       628 ~~~~~C~C~~g~~G~~Ce~~-~~~~  651 (834)
                      .++|.|.|+.||+|.+||.+ ++.|
T Consensus      3921 ~n~f~CnC~~gyTG~~Ce~~Gi~eC 3945 (4289)
T KOG1219|consen 3921 YNGFLCNCPNGYTGKRCEARGISEC 3945 (4289)
T ss_pred             CCCeeEeCCCCccCceeeccccccc
Confidence            99999999999999999987 5543

>KOG4289|consensus

Probab=99.97  E-value=1.1e-30  Score=292.06  Aligned_cols=262  Identities=27%  Similarity=0.590  Sum_probs=207.8

Q ss_pred             CceeEEeeeEEcCeeeeeccc-----ccccCCcccCCCCCC---------CCCCCCCCCCCCCeecccCCCCCceeeecC
Q psy9228         532 GFHGCISTIDVLGSELDLINS-----AVDSANIMDCSDLES---------SPVCAPKPCQNYGICYPTDTSERGYNCSCL  597 (834)
Q Consensus       532 gF~GCi~~v~ing~~~~~~~~-----~~~~~~~~~C~~~~~---------~~~C~~~pC~ngg~C~~~~~~~~~~~C~C~  597 (834)
                      .+.-|++-+++.+....+...     .+...+...|.++.+         +|.|-++||.|+|+|....+   +|+|.|.
T Consensus      1189 nymkCvsvlrFdssapf~~s~s~lfRpi~pvnglrCrCPpGFTgd~CeTeiDlCYs~pC~nng~C~srEg---gYtCeCr 1265 (2531)
T KOG4289|consen 1189 NYMKCVSVLRFDSSAPFLASDSVLFRPIHPVNGLRCRCPPGFTGDYCETEIDLCYSGPCGNNGRCRSREG---GYTCECR 1265 (2531)
T ss_pred             HHHhhhhheeecccCccccccceeeeeccccCceeEeCCCCCCcccccchhHhhhcCCCCCCCceEEecC---ceeEEec
Confidence            455566666666654433332     123334445666655         67888999999999999877   9999999


Q ss_pred             CCCCCCCCccCcc--CCCCCCccCCCceeeecC-CCcEEcCCC-CCCCCCcccccccceeeEEcCCceeeechhhhhhcc
Q psy9228         598 TGYSGDHCEKENN--MCMKGDVCKNGGMCKVTP-DSYECLCSL-GYAPPNCAKRVSIGSEVHFLGEGYVELKKELIEERR  673 (834)
Q Consensus       598 ~G~~G~~Ce~~~~--~C~~~~pC~ngg~C~~~~-~~~~C~C~~-g~~G~~Ce~~~~~~~~~~F~g~s~~~~~~~~~~~~~  673 (834)
                      +||+|++||.+..  -|.+. -|+|||+|++.. ++|.|.|+. .|++++||..     +.+|.+.||+.|....   .+
T Consensus      1266 pg~tGehCEvs~~agrCvpG-vC~nggtC~~~~nggf~c~Cp~ge~e~prC~v~-----trSFp~~sfv~frglr---qR 1336 (2531)
T KOG4289|consen 1266 PGFTGEHCEVSARAGRCVPG-VCKNGGTCVNLLNGGFCCHCPYGEFEDPRCEVT-----TRSFPPESFVTFRGLR---QR 1336 (2531)
T ss_pred             CCccccceeeecccCccccc-eecCCCEEeecCCCceeccCCCcccCCCceEEE-----eeccCchheEEEeccc---cc
Confidence            9999999998754  69888 999999999875 889999999 5999999964     5689999999986433   24


Q ss_pred             CcceEEEEEEeCCCCeeEEecCCCCCCCCCCcceEEEEEECCEEEEEEEcCCcEEEEEe-CCceecCCCcEEEEEEEECC
Q psy9228         674 NEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKF-SKKPVNDGIKHSVNVTRINK  752 (834)
Q Consensus       674 ~~~~i~~~frT~~~~GlLl~~~~~~~~~~~~~~~~~l~l~~G~l~~~~~~g~~~~~l~~-s~~~~nDg~wH~V~i~r~~~  752 (834)
                      ..++++|.|.|-..+|||||.+.+.      .||++|++++++|++.|..|....++.. -+..++||+||+|.+....+
T Consensus      1337 fh~TlslsfaT~~~nGlL~ynGnek------hDFvalevVd~qvqltfS~Ges~t~v~p~Vp~gvsDGqWHtV~l~YyNK 1410 (2531)
T KOG4289|consen 1337 FHFTLSLSFATIERNGLLLYNGNEK------HDFVALEVVDEQVQLTFSAGESTTTVSPDVPGGVSDGQWHTVQLEYYNK 1410 (2531)
T ss_pred             eEEEEEEEEEEeeecceEEecCCcc------cceEeeeeeeeeEEEEEecccccceecCCCCCCcccCceeEEEEEEece
Confidence            6788999999999999999999653      6999999999999999999976666651 23469999999999999999


Q ss_pred             EEEEEEcCeeee-------------cccCCCCccceecCCceEEcCcCCCCCCCCCccCCCceEEEEEEEECCcee
Q psy9228         753 FGSLEVDSVIVG-------------KGESPGSQDVINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNIHIQNKHI  815 (834)
Q Consensus       753 ~~~l~VD~~~~~-------------~~~~~~~~~~l~~~~~lyiGG~p~~~~~~~~~~~~~F~GCi~~v~in~~~~  815 (834)
                      .+.|.||+=...             .++..+..+.|++.+++++||+|+....    ...-|+||||++.++++++
T Consensus      1411 ~av~svDdCdt~~al~fg~~gNCAa~g~q~~sKKsLDltgpLlLGGvPe~fpv----~~k~FvGCmrdLsvD~~~V 1482 (2531)
T KOG4289|consen 1411 VAVVSVDDCDTNVALRFGTIGNCAAQGTQTGSKKSLDLTGPLLLGGVPETFPV----IEKQFVGCMRDLSVDGRDV 1482 (2531)
T ss_pred             EEEEEeccccccceeeecCccchHhhhhccCcceeeeccCceeecCCCCcchh----hHhHhhhhhhhcccccccc
Confidence            999999975431             1123345567999999999999965322    3567999999999999754

>PF00054 Laminin_G_1: Laminin G domain; InterPro: IPR012679 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []

Probab=99.92  E-value=2.9e-24  Score=197.47  Aligned_cols=127  Identities=35%  Similarity=0.579  Sum_probs=107.3

Q ss_pred             EEeCCCCeeEEecCCCCCCCCCCcceEEEEEECCEEEEEEEcCCcEEEEEeCCceecCCCcEEEEEEEECCEEEEEEcCe
Q psy9228         682 FVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSV  761 (834)
Q Consensus       682 frT~~~~GlLl~~~~~~~~~~~~~~~~~l~l~~G~l~~~~~~g~~~~~l~~s~~~~nDg~wH~V~i~r~~~~~~l~VD~~  761 (834)
                      |||..++|+|||.+....     .||++|+|.+|+|+|+|++|+++..+. +..+++||+||+|++.|.++.++|+||+.
T Consensus         1 frT~~~~Gllly~g~~~~-----~dfial~L~~G~l~~~~~~G~~~~~~~-~~~~i~dg~wh~v~~~r~~~~~~L~Vd~~   74 (131)
T PF00054_consen    1 FRTSEPNGLLLYLGSKDG-----KDFIALELRDGRLEFRYNLGSGPASLR-SPQKINDGKWHTVSVSRNGRNGSLSVDGE   74 (131)
T ss_dssp             EEESSSSEEEEEEESSTT-----SSEEEEEEETTEEEEEEESSSEEEEEE-ESSETTSSSEEEEEEEEETTEEEEEETTS
T ss_pred             CccCCCCceEEECCcCCC-----CCEEEEEEECCEEEEEEeCCCccceec-CCCccCCCcceEEEEEEcCcEEEEEECCc
Confidence            899999999999987643     599999999999999999999988888 66679999999999999999999999998


Q ss_pred             eeecccCCCCccc-eecCCceEEcCcCCC-CCCCCCccCCCceEEEEEEEECCce
Q psy9228         762 IVGKGESPGSQDV-INTRGNIYLGGTPNM-DLMTGGRYVHPMSGLMMNIHIQNKH  814 (834)
Q Consensus       762 ~~~~~~~~~~~~~-l~~~~~lyiGG~p~~-~~~~~~~~~~~F~GCi~~v~in~~~  814 (834)
                      ......++..... ++...+|||||+|.. ..........+|.|||++|.||+++
T Consensus        75 ~~~~~~s~~~~~~~l~~~~~lyvGG~p~~~~~~~~~~~~~~f~GCi~~~~in~~~  129 (131)
T PF00054_consen   75 EVVTGESPSGATQSLDVDGPLYVGGLPSSSSRPRPLPISPGFKGCIRNLSINGKP  129 (131)
T ss_dssp             EEEEEEECSSSSSSCEECSEEEESSSSTTTGCGSSCSCCSB-EEEEEEEEETTEE
T ss_pred             cceeeecCCccccccccccCEEEccCCchhhcccccccCCCeeEEEEEeEECCEE
Confidence            8855555544444 888889999999933 2334456788999999999999974

The laminin globular (G) domain can be found in one to several copies in various laminin family members, which includes a large number of extracellular proteins. The C terminus of laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions has been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each has five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012680 from INTERPRO).; PDB: 1OKQ_A 1DYK_A 2C5D_A 1H30_A 1LHW_A 1KDK_A 1LHU_A 1KDM_A 1LHO_A 1D2S_A ....

>smart00282 LamG Laminin G domain

Probab=99.90  E-value=1.6e-22  Score=188.28  Aligned_cols=134  Identities=33%  Similarity=0.538  Sum_probs=112.3

Q ss_pred             cceEEEEEEeCCCCeeEEecCCCCCCCCCCcceEEEEEECCEEEEEEEcCCcEEEEEeCCceecCCCcEEEEEEEECCEE
Q psy9228         675 EETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVTRINKFG  754 (834)
Q Consensus       675 ~~~i~~~frT~~~~GlLl~~~~~~~~~~~~~~~~~l~l~~G~l~~~~~~g~~~~~l~~s~~~~nDg~wH~V~i~r~~~~~  754 (834)
                      .++|+|+|||.+++|+|||+....     ..+|++|+|.+|+|++.++.+++...++....+++||+||+|.|.|.++.+
T Consensus         2 ~~~i~~~frt~~~~g~l~~~~~~~-----~~~~l~l~l~~g~l~~~~~~g~~~~~~~~~~~~~~dg~WH~v~i~~~~~~~   76 (135)
T smart00282        2 RLSISFSFRTTSPNGLLLYAGSKN-----GGDYLALELRDGRLVLRYDLGSGPARLTSDPTPLNDGQWHRVAVERNGRRV   76 (135)
T ss_pred             ceEEEEEEEeCCCCEEEEEeCCCC-----CCCEEEEEEECCEEEEEEECCCCCEEEEECCeEeCCCCEEEEEEEEeCCEE
Confidence            468999999999999999997632     368999999999999999999888777744489999999999999999999


Q ss_pred             EEEEcCeeeecccCCCCccceecCCceEEcCcCCCCCCCCCccCCCceEEEEEEEECCc
Q psy9228         755 SLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNIHIQNK  813 (834)
Q Consensus       755 ~l~VD~~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~~~~~~~~~~~F~GCi~~v~in~~  813 (834)
                      +|+||+........++....++..+.+||||+|+...........+|+|||++|+||+.
T Consensus        77 ~l~VD~~~~~~~~~~~~~~~l~~~~~l~iGG~p~~~~~~~~~~~~~F~GCi~~v~in~~  135 (135)
T smart00282       77 TLSVDGENPVSGESPGGLTILNLDGPLYLGGLPEDLKLPPLLVTPGFRGCIRNLKVNGK  135 (135)
T ss_pred             EEEECCCccccEECCCCceEEecCCCcEEccCCchhcccccccCCCCeeEeeEEEECCC
Confidence            99999976544444555567788899999999987443334567899999999999873

>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans

Probab=99.90  E-value=1.6e-22  Score=192.57  Aligned_cols=150  Identities=35%  Similarity=0.572  Sum_probs=121.9

Q ss_pred             eEEcCCceeeechhhhhhccCcceEEEEEEeCCCCeeEEecCCCCCCCCCCcceEEEEEECCEEEEEEEcCCcEEEEEeC
Q psy9228         654 VHFLGEGYVELKKELIEERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFS  733 (834)
Q Consensus       654 ~~F~g~s~~~~~~~~~~~~~~~~~i~~~frT~~~~GlLl~~~~~~~~~~~~~~~~~l~l~~G~l~~~~~~g~~~~~l~~s  733 (834)
                      +.|.|++|+.|+.....  ....+|+|+|||.+++|+||+.+...     ..+|++|+|.+|+|++.++.|.+...+. +
T Consensus         2 ~~F~g~~~i~~~~~~~~--~~~~~i~~~frt~~~~g~l~~~~~~~-----~~~~~~l~l~~g~l~~~~~~g~~~~~~~-~   73 (151)
T cd00110           2 VSFSGSSYVRLPTLPAP--RTRLSISFSFRTTSPNGLLLYAGSQN-----GGDFLALELEDGRLVLRYDLGSGSLVLS-S   73 (151)
T ss_pred             eEeCCCceEEecCCCCC--cceeEEEEEEEeCCCCeEEEEecCCC-----CCCEEEEEEECCEEEEEEcCCcccEEEE-c
Confidence            67999999999865432  57899999999999999999998752     3699999999999999999986666676 5


Q ss_pred             CceecCCCcEEEEEEEECCEEEEEEcCeeeecccCCCCccceecCCceEEcCcCCCCCCCCCccCCCceEEEEEEEEC
Q psy9228         734 KKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNIHIQ  811 (834)
Q Consensus       734 ~~~~nDg~wH~V~i~r~~~~~~l~VD~~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~~~~~~~~~~~F~GCi~~v~in  811 (834)
                      ..+++||+||+|.+.+.++.++|+||+........+.....++..+.+||||+|+...........+|+|||++|+||
T Consensus        74 ~~~v~dg~Wh~v~i~~~~~~~~l~VD~~~~~~~~~~~~~~~~~~~~~~~iGg~~~~~~~~~~~~~~~F~Gci~~v~in  151 (151)
T cd00110          74 KTPLNDGQWHSVSVERNGRSVTLSVDGERVVESGSPGGSALLNLDGPLYLGGLPEDLKSPGLPVSPGFVGCIRDLKVN  151 (151)
T ss_pred             cCccCCCCEEEEEEEECCCEEEEEECCccEEeeeCCCCceeecCCCCeEEcCCCCchhcccccccCCCceEeeEeEeC
Confidence            558999999999999999999999999754433333332246777899999999864333344678999999999997

Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.

>PF00054 Laminin_G_1: Laminin G domain; InterPro: IPR012679 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []

Probab=99.86  E-value=1.6e-20  Score=172.68  Aligned_cols=129  Identities=33%  Similarity=0.685  Sum_probs=106.7

Q ss_pred             EeeCCCCeeEEEeccCCccccCCCCCeEEEEEECcEEEEEEecc--cEEEEeeeeecCCCeEEEEEEEECCeEEEEECCe
Q psy9228         413 FKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVG--LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGE  490 (834)
Q Consensus       413 frt~~~~GlLl~~~~~~~~~~~~~~d~~~l~L~~G~l~~~~~~G--~~~i~s~~~~~dg~wH~V~v~~~~~~~~l~VD~~  490 (834)
                      |||.+++|+|||.++.      ...||++|+|.+|++++++++|  ...+.++..++||+||+|++.|..+.+.|+||+.
T Consensus         1 frT~~~~Gllly~g~~------~~~dfial~L~~G~l~~~~~~G~~~~~~~~~~~i~dg~wh~v~~~r~~~~~~L~Vd~~   74 (131)
T PF00054_consen    1 FRTSEPNGLLLYLGSK------DGKDFIALELRDGRLEFRYNLGSGPASLRSPQKINDGKWHTVSVSRNGRNGSLSVDGE   74 (131)
T ss_dssp             EEESSSSEEEEEEESS------TTSSEEEEEEETTEEEEEEESSSEEEEEEESSETTSSSEEEEEEEEETTEEEEEETTS
T ss_pred             CccCCCCceEEECCcC------CCCCEEEEEEECCEEEEEEeCCCccceecCCCccCCCcceEEEEEEcCcEEEEEECCc
Confidence            8999999999999874      3459999999999999999998  4667778889999999999999999999999998


Q ss_pred             eeeeeecCCCccccccCCCceeeccccCCCcccCcCcccccCceeEEeeeEEcCeeee
Q psy9228         491 PLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELD  548 (834)
Q Consensus       491 ~~~~~~~~g~~~~~l~~~~~l~iGG~~~~~~~~~~~~~~~~gF~GCi~~v~ing~~~~  548 (834)
                      ......++......++...++||||+|.. ...........+|.|||+++.+|++++|
T Consensus        75 ~~~~~~s~~~~~~~l~~~~~lyvGG~p~~-~~~~~~~~~~~~f~GCi~~~~in~~~ld  131 (131)
T PF00054_consen   75 EVVTGESPSGATQSLDVDGPLYVGGLPSS-SSRPRPLPISPGFKGCIRNLSINGKPLD  131 (131)
T ss_dssp             EEEEEEECSSSSSSCEECSEEEESSSSTT-TGCGSSCSCCSB-EEEEEEEEETTEEC-
T ss_pred             cceeeecCCccccccccccCEEEccCCch-hhcccccccCCCeeEEEEEeEECCEECc
Confidence            88666666551334888889999999932 2233445667899999999999998875

The laminin globular (G) domain can be found in one to several copies in various laminin family members, which includes a large number of extracellular proteins. The C terminus of laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions has been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each has five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012680 from INTERPRO).; PDB: 1OKQ_A 1DYK_A 2C5D_A 1H30_A 1LHW_A 1KDK_A 1LHU_A 1KDM_A 1LHO_A 1D2S_A ....

>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []

Probab=99.85  E-value=3.3e-20  Score=171.21  Aligned_cols=127  Identities=28%  Similarity=0.510  Sum_probs=106.1

Q ss_pred             EEeCCCCeeEEecCCCCCCCCCCcceEEEEEECCEEEEEEEcCCcEEEEEeCCceecCCCcEEEEEEEECCEEEEEEcCe
Q psy9228         682 FVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSV  761 (834)
Q Consensus       682 frT~~~~GlLl~~~~~~~~~~~~~~~~~l~l~~G~l~~~~~~g~~~~~l~~s~~~~nDg~wH~V~i~r~~~~~~l~VD~~  761 (834)
                      |||++++|+|||++....     .+|++|+|.||+|++.+++|+....+..++.+++||+||+|.+.|.++.++|.||+.
T Consensus         1 Frt~~~~g~Ll~~~~~~~-----~~~l~l~l~~g~l~~~~~~g~~~~~~~~~~~~~~dg~wh~v~i~~~~~~~~l~Vd~~   75 (128)
T PF02210_consen    1 FRTRSPNGLLLYIGSEDN-----GDFLSLELVDGRLVVRYNLGGSEIVTTFSNSNLNDGQWHKVSISRDGNRVTLTVDGQ   75 (128)
T ss_dssp             EEESSSSEEEEEEEESTT-----SEEEEEEEETTEEEEEEESSSSEEEEEECSSSSTSSSEEEEEEEEETTEEEEEETTS
T ss_pred             CccCCCCEeEEEEcCCCC-----CEEEEEEEECCEEEEEEEccccceeeeccCccccccceeEEEEEEeeeeEEEEecCc
Confidence            899999999999987532     589999999999999999996666555588899999999999999999999999999


Q ss_pred             eeecccCCCCcc-ceecCCceEEcCcCCCCCCCCCccCCCceEEEEEEEECCc
Q psy9228         762 IVGKGESPGSQD-VINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNIHIQNK  813 (834)
Q Consensus       762 ~~~~~~~~~~~~-~l~~~~~lyiGG~p~~~~~~~~~~~~~F~GCi~~v~in~~  813 (834)
                      ............ .++....+||||.|............+|+|||++|+|||+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~l~iGg~~~~~~~~~~~~~~~f~Gci~~l~vng~  128 (128)
T PF02210_consen   76 SVSSESLPSSSSDSLDPDGSLYIGGLPESNQPSGSVDTPGFVGCIRDLRVNGQ  128 (128)
T ss_dssp             EEEEEESSSTTHHCBESEEEEEESSTTTTCTCTTSSTTSB-EEEEEEEEETTE
T ss_pred             cceEEeccccceecccCCCCEEEecccCccccccccCCCCcEEEcCeEEECCC
Confidence            877665544433 6677778999999987554444448899999999999984

The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012679 from INTERPRO).; PDB: 3POY_A 3QCW_B 3R05_B 3ASI_A 3MW4_B 3MW3_A 1QU0_D 1DYK_A 1OKQ_A 3SH4_A ....

>KOG1219|consensus

Probab=99.84  E-value=4.6e-20  Score=214.69  Aligned_cols=210  Identities=24%  Similarity=0.457  Sum_probs=176.5

Q ss_pred             CceeeecCCCCCCCCCccCccCCCCCCccCCCceeeecC--CCcEEcCCCCCCCCCcccccccceeeEEcCCceeeechh
Q psy9228         590 RGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTP--DSYECLCSLGYAPPNCAKRVSIGSEVHFLGEGYVELKKE  667 (834)
Q Consensus       590 ~~~~C~C~~G~~G~~Ce~~~~~C~~~~pC~ngg~C~~~~--~~~~C~C~~g~~G~~Ce~~~~~~~~~~F~g~s~~~~~~~  667 (834)
                      ..-.|.|..|+    |+.+.+.|... ||..+-.|+...  ..|+|.||.|-.| .|...    ..+++.|+||++|...
T Consensus      3631 r~a~ClC~~G~----Cp~~~~~C~~~-pcp~~~~Cvs~~~~~~~~cVcP~gr~g-~C~g~----~elS~tGnSYveyrls 3700 (4289)
T KOG1219|consen 3631 RTAACLCNRGF----CPVETNQCAKS-PCPAGNLCVSSVHNSTYTCVCPIGRFG-FCQGD----FELSSTGNSYVEYRLS 3700 (4289)
T ss_pred             ccceeeecCCc----CCcccCccccC-CCcccCcccccccccceeEeccCcccc-cCCCc----ceEeecCceeEEEEcc
Confidence            46789999998    99999999999 999999998764  5799999998554 47665    4689999999999754


Q ss_pred             hhhhccCcceEEEEEEeCCCCeeEEecCCCCCCCCCCcceEEEEEECCEEEEEEEcCCcEEEEEeCCceecCCCcEEEEE
Q psy9228         668 LIEERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNV  747 (834)
Q Consensus       668 ~~~~~~~~~~i~~~frT~~~~GlLl~~~~~~~~~~~~~~~~~l~l~~G~l~~~~~~g~~~~~l~~s~~~~nDg~wH~V~i  747 (834)
                      ..  ....+.+.|.+||..++|++||...        .+|..|.|.+|.+.+.++.|+++-.+......+|||+||.|.+
T Consensus      3701 e~--~n~~~kl~frLkT~~sngIiM~tr~--------~d~~iLkLv~G~~~l~~~cgsG~Givg~q~~~VnDgqWHsial 3770 (4289)
T KOG1219|consen 3701 EN--QNTRMKLGFRLKTLQSNGIIMYTRK--------TDLAILKLVGGSPQLLADCGSGPGIVGSQKRTVNDGQWHSIAL 3770 (4289)
T ss_pred             cc--cccceEEEEEEEecccCcEEEEEcC--------CceEEEEecCCcEEEEEecCCCCCcccccceEeecCceeEEEe
Confidence            33  1244899999999999999999974        5899999999999999999999866663347899999999999


Q ss_pred             EEECCEEEEEEcCeeeecccCCCCccceecCCceEEcCcCCCCCCCCCccCCCceEEEEEEEECCceecccCC
Q psy9228         748 TRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNIHIQNKHISNIGS  820 (834)
Q Consensus       748 ~r~~~~~~l~VD~~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~~~~~~~~~~~F~GCi~~v~in~~~~~~l~~  820 (834)
                      .|+++.++|.||.........|+..+.++++..||+||.-.....+......+|.|||+.+.+||..+ +|.+
T Consensus      3771 errr~~irlsvDd~~~~~atvPg~~~tln~d~hiy~Ga~vrlr~~~~tqvs~Gf~GCldsiyLng~el-~l~~ 3842 (4289)
T KOG1219|consen 3771 ERRRNHIRLSVDDDTYDSATVPGMKSTLNLDTHIYLGALVRLRHQRSTQVSYGFDGCLDSIYLNGMEL-PLTR 3842 (4289)
T ss_pred             eccCCceEEEEcccCceeeecccceeeccccceEEEeeEeeeccCCCccccccccceeeeEEEccccc-cccC
Confidence            99999999999999988888999888999999999999765222233346889999999999999754 4544

>smart00282 LamG Laminin G domain

Probab=99.78  E-value=6.6e-18  Score=157.12  Aligned_cols=131  Identities=39%  Similarity=0.683  Sum_probs=108.3

Q ss_pred             eEEEEEEEeeCCCCeeEEEeccCCccccCCCCCeEEEEEECcEEEEEEecc--cEEEEee-eeecCCCeEEEEEEEECCe
Q psy9228         406 HFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVG--LVVLRSK-VTLVPHEWVVVTIIKDFKE  482 (834)
Q Consensus       406 ~~~i~~~frt~~~~GlLl~~~~~~~~~~~~~~d~~~l~L~~G~l~~~~~~G--~~~i~s~-~~~~dg~wH~V~v~~~~~~  482 (834)
                      .++|+|+|||.+++|+|||..+.      ...+|++|+|.+|++.+.++.|  ...+... ..++||+||+|.+.+..+.
T Consensus         2 ~~~i~~~frt~~~~g~l~~~~~~------~~~~~l~l~l~~g~l~~~~~~g~~~~~~~~~~~~~~dg~WH~v~i~~~~~~   75 (135)
T smart00282        2 RLSISFSFRTTSPNGLLLYAGSK------NGGDYLALELRDGRLVLRYDLGSGPARLTSDPTPLNDGQWHRVAVERNGRR   75 (135)
T ss_pred             ceEEEEEEEeCCCCEEEEEeCCC------CCCCEEEEEEECCEEEEEEECCCCCEEEEECCeEeCCCCEEEEEEEEeCCE
Confidence            47899999999999999999752      3679999999999999999987  3555665 8999999999999999999


Q ss_pred             EEEEECCeeeeeeecCCCccccccCCCceeeccccCCCcccCcCcccccCceeEEeeeEEcCe
Q psy9228         483 GKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGS  545 (834)
Q Consensus       483 ~~l~VD~~~~~~~~~~g~~~~~l~~~~~l~iGG~~~~~~~~~~~~~~~~gF~GCi~~v~ing~  545 (834)
                      +.|+||+........++. ...++....+||||+|....  ........+|.|||+++.+|+.
T Consensus        76 ~~l~VD~~~~~~~~~~~~-~~~l~~~~~l~iGG~p~~~~--~~~~~~~~~F~GCi~~v~in~~  135 (135)
T smart00282       76 VTLSVDGENPVSGESPGG-LTILNLDGPLYLGGLPEDLK--LPPLLVTPGFRGCIRNLKVNGK  135 (135)
T ss_pred             EEEEECCCccccEECCCC-ceEEecCCCcEEccCCchhc--ccccccCCCCeeEeeEEEECCC
Confidence            999999976555455554 56778889999999998532  1234456899999999999973

>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans

Probab=99.76  E-value=2.8e-17  Score=156.44  Aligned_cols=142  Identities=40%  Similarity=0.701  Sum_probs=115.2

Q ss_pred             cccccCCccccceeEEEEEEEeeCCCCeeEEEeccCCccccCCCCCeEEEEEECcEEEEEEecc--cEEEEeeeeecCCC
Q psy9228         393 SYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVG--LVVLRSKVTLVPHE  470 (834)
Q Consensus       393 s~l~~~~~~~~~~~~~i~~~frt~~~~GlLl~~~~~~~~~~~~~~d~~~l~L~~G~l~~~~~~G--~~~i~s~~~~~dg~  470 (834)
                      +|+.++........++|+|+|||..++|+|||.+..      ...+|++|+|.+|++++.++.|  ...+.+..+++||+
T Consensus         8 ~~i~~~~~~~~~~~~~i~~~frt~~~~g~l~~~~~~------~~~~~~~l~l~~g~l~~~~~~g~~~~~~~~~~~v~dg~   81 (151)
T cd00110           8 SYVRLPTLPAPRTRLSISFSFRTTSPNGLLLYAGSQ------NGGDFLALELEDGRLVLRYDLGSGSLVLSSKTPLNDGQ   81 (151)
T ss_pred             ceEEecCCCCCcceeEEEEEEEeCCCCeEEEEecCC------CCCCEEEEEEECCEEEEEEcCCcccEEEEccCccCCCC
Confidence            899998876557789999999999999999999763      2589999999999999999997  45666666899999


Q ss_pred             eEEEEEEEECCeEEEEECCeeeeeeecCCCccccccCCCceeeccccCCCcccCcCcccccCceeEEeeeEEc
Q psy9228         471 WVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVL  543 (834)
Q Consensus       471 wH~V~v~~~~~~~~l~VD~~~~~~~~~~g~~~~~l~~~~~l~iGG~~~~~~~~~~~~~~~~gF~GCi~~v~in  543 (834)
                      ||+|.+.+..+.++|.||+........+.. ...+.....+||||.|.....  .......+|.|||+++.+|
T Consensus        82 Wh~v~i~~~~~~~~l~VD~~~~~~~~~~~~-~~~~~~~~~~~iGg~~~~~~~--~~~~~~~~F~Gci~~v~in  151 (151)
T cd00110          82 WHSVSVERNGRSVTLSVDGERVVESGSPGG-SALLNLDGPLYLGGLPEDLKS--PGLPVSPGFVGCIRDLKVN  151 (151)
T ss_pred             EEEEEEEECCCEEEEEECCccEEeeeCCCC-ceeecCCCCeEEcCCCCchhc--ccccccCCCceEeeEeEeC
Confidence            999999999999999999975444333332 224677889999999974221  2334568999999999986

Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.

>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []

Probab=99.68  E-value=1e-15  Score=141.10  Aligned_cols=124  Identities=33%  Similarity=0.557  Sum_probs=100.9

Q ss_pred             EeeCCCCeeEEEeccCCccccCCCCCeEEEEEECcEEEEEEecc-c--EEEEeeeeecCCCeEEEEEEEECCeEEEEECC
Q psy9228         413 FKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVG-L--VVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGG  489 (834)
Q Consensus       413 frt~~~~GlLl~~~~~~~~~~~~~~d~~~l~L~~G~l~~~~~~G-~--~~i~s~~~~~dg~wH~V~v~~~~~~~~l~VD~  489 (834)
                      |||.+++|+|||.+...      ..+|+.|+|.+|++++.+++| .  ........++||+||.|.+.+..+.++|.||+
T Consensus         1 Frt~~~~g~Ll~~~~~~------~~~~l~l~l~~g~l~~~~~~g~~~~~~~~~~~~~~dg~wh~v~i~~~~~~~~l~Vd~   74 (128)
T PF02210_consen    1 FRTRSPNGLLLYIGSED------NGDFLSLELVDGRLVVRYNLGGSEIVTTFSNSNLNDGQWHKVSISRDGNRVTLTVDG   74 (128)
T ss_dssp             EEESSSSEEEEEEEEST------TSEEEEEEEETTEEEEEEESSSSEEEEEECSSSSTSSSEEEEEEEEETTEEEEEETT
T ss_pred             CccCCCCEeEEEEcCCC------CCEEEEEEEECCEEEEEEEccccceeeeccCccccccceeEEEEEEeeeeEEEEecC
Confidence            89999999999998742      268999999999999999998 3  44556788999999999999999999999999


Q ss_pred             eeeeeeecCCCccc-cccCCCceeeccccCCCcccCcCcccccCceeEEeeeEEcCe
Q psy9228         490 EPLIVGSTPGEKLQ-VLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGS  545 (834)
Q Consensus       490 ~~~~~~~~~g~~~~-~l~~~~~l~iGG~~~~~~~~~~~~~~~~gF~GCi~~v~ing~  545 (834)
                      ........... .. .++....+||||.|.......  .....+|.|||+++.+||+
T Consensus        75 ~~~~~~~~~~~-~~~~~~~~~~l~iGg~~~~~~~~~--~~~~~~f~Gci~~l~vng~  128 (128)
T PF02210_consen   75 QSVSSESLPSS-SSDSLDPDGSLYIGGLPESNQPSG--SVDTPGFVGCIRDLRVNGQ  128 (128)
T ss_dssp             SEEEEEESSST-THHCBESEEEEEESSTTTTCTCTT--SSTTSB-EEEEEEEEETTE
T ss_pred             ccceEEecccc-ceecccCCCCEEEecccCcccccc--ccCCCCcEEEcCeEEECCC
Confidence            88877665554 22 667777899999998542211  1127899999999999985

The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012679 from INTERPRO).; PDB: 3POY_A 3QCW_B 3R05_B 3ASI_A 3MW4_B 3MW3_A 1QU0_D 1DYK_A 1OKQ_A 3SH4_A ....

>KOG3509|consensus

Probab=99.33  E-value=9.9e-11  Score=134.85  Aligned_cols=192  Identities=28%  Similarity=0.432  Sum_probs=135.5

Q ss_pred             CCCCeEEEEEECcEEEEEEecc--cEEEEeeeeecCCCeEEEEEEEECCeEEEEECC-eeeeeeecCCCccccccCCCce
Q psy9228         435 GKGDFVSFGLEDGYPVFRFDVG--LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGG-EPLIVGSTPGEKLQVLNLRTPL  511 (834)
Q Consensus       435 ~~~d~~~l~L~~G~l~~~~~~G--~~~i~s~~~~~dg~wH~V~v~~~~~~~~l~VD~-~~~~~~~~~g~~~~~l~~~~~l  511 (834)
                      ...+|+++.+.-|.+.++++.+  ...+......-+++|+.+.+.|   .-.+.+++ .....+..++. ...+.....+
T Consensus       278 ~~~~f~~lt~~~g~~g~~~~~~~~~~~~~~~~~~~~~E~~~~~i~r---~s~~~~~g~~~~l~g~~~~~-~~~i~~ee~v  353 (964)
T KOG3509|consen  278 FKDGFRALTLDGGTDGVRYDCGLPQREDRLDVTSYIGEWRFGIIFR---GSGLSVSGHKGVLQGNSNIL-VSRITNEESV  353 (964)
T ss_pred             cccceeeeccCCCCccccccccCcchhhhhccccccceeeeeEeee---cccccccCcceeeccccccc-ccceeecccc
Confidence            4678999999999888888776  4556677888999999999998   22333443 22233334443 3344555668


Q ss_pred             eeccccCCCcccCcCcccccCceeEEeeeEEcCeeeeecccccccCCc-ccCCCCCCCCCCCCCCCCCCCeecccCCCCC
Q psy9228         512 YLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANI-MDCSDLESSPVCAPKPCQNYGICYPTDTSER  590 (834)
Q Consensus       512 ~iGG~~~~~~~~~~~~~~~~gF~GCi~~v~ing~~~~~~~~~~~~~~~-~~C~~~~~~~~C~~~pC~ngg~C~~~~~~~~  590 (834)
                      |+|++-+ ...+........||.|||+++.+++..++........+.. ..|.    .+.|...||++.+.|.+...   
T Consensus       354 ~lg~i~n-i~~l~~~~~~~eGf~gci~~~~~~~k~l~~~~~~~~~v~~~~~c~----g~~c~~~p~~~~g~c~p~~~---  425 (964)
T KOG3509|consen  354 FLGGIIN-IETLQHNLPLPEGFAGCIRDLVMNLKDLRVTLQRASYVAAQGTCL----GDVCWRIPCQHDGPCLQTLE---  425 (964)
T ss_pred             cCCceee-eccccccCCCccCccceehhhhhhccccccccccccccccccccC----CCccccccCCCCcccccccc---
Confidence            8888444 2234555667789999999999999988876643322222 2444    48899999999999999987   


Q ss_pred             ceeeecCCCCCCCCCccCccCCCCCCccCCCceeeecCCCcEEcCCCC
Q psy9228         591 GYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDSYECLCSLG  638 (834)
Q Consensus       591 ~~~C~C~~G~~G~~Ce~~~~~C~~~~pC~ngg~C~~~~~~~~C~C~~g  638 (834)
                      ...|.|++||+|..|+...+.|....+=.-.++|........+.|.++
T Consensus       426 ~~~c~c~~g~~G~~c~d~~~~~~~~~~g~y~~t~~~~~~~~~~~c~pg  473 (964)
T KOG3509|consen  426 GKQCLCPPGYTGDSCEDCMNGCDRSPNGSYLGTCVPIQGKRCEYCGPG  473 (964)
T ss_pred             ccceeccccccCchhhccCccccccCCccccceEeccCCCcceeecCC
Confidence            999999999999999998888776522222456655555556666666

>smart00210 TSPN Thrombospondin N-terminal -like domains

Probab=99.03  E-value=1.2e-08  Score=99.67  Aligned_cols=146  Identities=14%  Similarity=0.126  Sum_probs=94.0

Q ss_pred             eeEEcCCceeeechhhh-h-hccCcceEEEEEEeC-CCCeeEEecCCCCCCCCCCcceEEEEEECCEEEEEEEc--C-Cc
Q psy9228         653 EVHFLGEGYVELKKELI-E-ERRNEETIAFDFVTD-DKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDL--G-DG  726 (834)
Q Consensus       653 ~~~F~g~s~~~~~~~~~-~-~~~~~~~i~~~frT~-~~~GlLl~~~~~~~~~~~~~~~~~l~l~~G~l~~~~~~--g-~~  726 (834)
                      ++.|..+..+..+...+ + .....+.|.++||+. ...|.||......     +..++.|.|..++..+.+..  . +.
T Consensus        29 Ay~~~~~a~~~~~t~~~~p~~~~~~fsi~~~~r~~~~~~g~L~si~~~~-----~~~~l~v~l~g~~~~~~~~~~~~~g~  103 (184)
T smart00210       29 AYRLGDPALVPQPTRDLFPSGLPEDFSLLTTFRQTPKSRGVLFAIYDAQ-----NVRQFGLEVDGRANTLLLRYQGVDGK  103 (184)
T ss_pred             eEEecCCcccCcchHHhCcCCCCCCeEEEEEEEeCCCCCeEEEEEEcCC-----CcEEEEEEEeCCccEEEEEECCCCCc
Confidence            56666554444332211 1 123778999999997 6788888776532     35689999886664444442  2 22


Q ss_pred             EEEEEeCCceecCCCcEEEEEEEECCEEEEEEcCeeeecccCCCCc-cceecCCceEEcCcCCCCCCCCCccCCCceEEE
Q psy9228         727 VVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQ-DVINTRGNIYLGGTPNMDLMTGGRYVHPMSGLM  805 (834)
Q Consensus       727 ~~~l~~s~~~~nDg~wH~V~i~r~~~~~~l~VD~~~~~~~~~~~~~-~~l~~~~~lyiGG~p~~~~~~~~~~~~~F~GCi  805 (834)
                      ...+...+..+.||+||+|.+...+..++|+||...+......... ..++..+ +.++|....       ....|.|+|
T Consensus       104 ~~~~~f~~~~l~dg~WH~lal~V~~~~v~LyvDC~~~~~~~l~~~~~~~~~~~g-~~~~g~~~~-------~~~~f~G~l  175 (184)
T smart00210      104 QHTVSFRNLPLADGQWHKLALSVSGSSATLYVDCNEIDSRPLDRPGQPPIDTDG-IEVRGAQAA-------DRKPFQGDL  175 (184)
T ss_pred             EEEEeecCCccccCCceEEEEEEeCCEEEEEECCccccceecCCcccccccccc-eEEEeeccC-------CCCcceEEe
Confidence            3334434578999999999999999999999999887654322211 1333333 455554322       135799999


Q ss_pred             EEEEEC
Q psy9228         806 MNIHIQ  811 (834)
Q Consensus       806 ~~v~in  811 (834)
                      ++|+|-
T Consensus       176 q~l~i~  181 (184)
T smart00210      176 QQLKIV  181 (184)
T ss_pred             EEEEEe
Confidence            999983

Heparin-binding and cell adhesion domain of thrombospondin

>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A

Probab=98.70  E-value=4.3e-07  Score=86.35  Aligned_cols=143  Identities=21%  Similarity=0.364  Sum_probs=90.1

Q ss_pred             eeEEcC-CceeeechhhhhhccCcceEEEEEEeCCCCe---eEEecCCCCCCCCCCcceEEEEEE-CCEEEEEEEcCCc-
Q psy9228         653 EVHFLG-EGYVELKKELIEERRNEETIAFDFVTDDKNA---LLLWNGQPSYKNGIGREFIAVAVV-NGYLEYSYDLGDG-  726 (834)
Q Consensus       653 ~~~F~g-~s~~~~~~~~~~~~~~~~~i~~~frT~~~~G---lLl~~~~~~~~~~~~~~~~~l~l~-~G~l~~~~~~g~~-  726 (834)
                      ++.|.| ++|+.++...+.  ...++|+++||......   .++....       ..+.+.|.+. +|++.+.+..+.+ 
T Consensus         2 a~~f~g~~~~i~~~~~~~~--~~~fTi~~w~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~l~~~~~~~~~~   72 (157)
T PF13385_consen    2 ALYFDGSNDYISIPNSDFP--SGSFTISFWVKPDSPSSSQSFVFMDSS-------GSGGFGLFINNNGRLRFYIGNGGGG   72 (157)
T ss_dssp             EEEE-STT-EEEEESGGGG--GTEEEEEEEEEESS--SSEEEEEESSS-------SSEEEEEEEETTSEEEEEETTSEEE
T ss_pred             EEEECCCCCEEEECCcCCC--CCCEEEEEEEEeCCCCCCceEEEEecC-------CCCEEEEEEECCCEEEEEEeCCCce
Confidence            456665 889999864433  57899999999876433   3333111       1246777776 6888887755432 


Q ss_pred             EEEEEeCCceecCCCcEEEEEEEECCEEEEEEcCeeeecccCCCCccceecCCceEEcCcCCCCCCCCCccCCCceEEEE
Q psy9228         727 VVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMM  806 (834)
Q Consensus       727 ~~~l~~s~~~~nDg~wH~V~i~r~~~~~~l~VD~~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~~~~~~~~~~~F~GCi~  806 (834)
                      ...+. +...+.+++||+|.++..++.++|+|||..+........ ........++||+...        ....|.|-|.
T Consensus        73 ~~~~~-~~~~~~~~~W~~l~~~~~~~~~~lyvnG~~~~~~~~~~~-~~~~~~~~~~iG~~~~--------~~~~~~g~i~  142 (157)
T PF13385_consen   73 NYSFS-SDSNLPDNKWHHLALTYDGSTVTLYVNGELVGSSTIPSN-ISLNSNGPLFIGGSGG--------GSSPFNGYID  142 (157)
T ss_dssp             SS-EE--BS---TT-EEEEEEEEETTEEEEEETTEEETTCTEESS-SSTTSCCEEEESS-ST--------T--B-EEEEE
T ss_pred             eEEEe-cCcccCCCCEEEEEEEEECCeEEEEECCEEEEeEeccCC-cCCCCcceEEEeecCC--------CCCceEEEEE
Confidence            22343 567899999999999999999999999998766533222 1234557899998662        2567999999


Q ss_pred             EEEECCce
Q psy9228         807 NIHIQNKH  814 (834)
Q Consensus       807 ~v~in~~~  814 (834)
                      +|+|-+..
T Consensus       143 ~~~i~~~a  150 (157)
T PF13385_consen  143 DLRIYNRA  150 (157)
T ss_dssp             EEEEESS-
T ss_pred             EEEEECcc
Confidence            99997764

...

>KOG1214|consensus

Probab=98.60  E-value=7.5e-07  Score=98.43  Aligned_cols=68  Identities=29%  Similarity=0.816  Sum_probs=55.4

Q ss_pred             CccCCCCCCCCCCCCEeccCCCCCceEeeCCCCCCC--CCCCCCCCCccC--CCCC-CCeeecCCCCeEEeCCCCc
Q psy9228         136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSG--DRCSVLGEPCYP--GACG-DGSCQDVDGAMKCLCPIGT  206 (834)
Q Consensus       136 ~~C~~~~~~pC~n~g~C~~~~~~~~~~C~C~~g~~G--~~Ce~~~~~C~~--~~C~-~g~C~~~~~~~~C~C~~g~  206 (834)
                      +.|. .++.-|.-++.|.... ...|+|.|..||.|  .+| .++++|+.  ..|. +..|++.++.|+|.|..||
T Consensus       693 npCy-~gsh~cdt~a~C~pg~-~~~~tcecs~g~~gdgr~c-~d~~eca~~~~~CGp~s~Cin~pg~~rceC~~gy  765 (1289)
T KOG1214|consen  693 NPCY-DGSHMCDTTARCHPGT-GVDYTCECSSGYQGDGRNC-VDENECATGFHRCGPNSVCINLPGSYRCECRSGY  765 (1289)
T ss_pred             ccce-ecCcccCCCccccCCC-CcceEEEEeeccCCCCCCC-CChhhhccCCCCCCCCceeecCCCceeEEEeecc
Confidence            3554 3478899999999875 46899999999975  689 67779998  4587 6899999999999998765

>KOG1217|consensus

Probab=98.56  E-value=9.9e-07  Score=101.20  Aligned_cols=77  Identities=30%  Similarity=0.780  Sum_probs=62.4

Q ss_pred             CCCCCCC-CCCCCeecccCCCCCceeeecCCCCCCCCC--ccCccCCC---CCCccCCCcee--eecCCCcEEcCCCCCC
Q psy9228         569 PVCAPKP-CQNYGICYPTDTSERGYNCSCLTGYSGDHC--EKENNMCM---KGDVCKNGGMC--KVTPDSYECLCSLGYA  640 (834)
Q Consensus       569 ~~C~~~p-C~ngg~C~~~~~~~~~~~C~C~~G~~G~~C--e~~~~~C~---~~~pC~ngg~C--~~~~~~~~C~C~~g~~  640 (834)
                      +.|...+ |.|+++|.+..+   .|.|.|++||+|..|  ..+...|.   ...+|.++++|  ......+.|.|..+|.
T Consensus       272 ~~C~~~~~c~~~~~C~~~~~---~~~C~C~~g~~g~~~~~~~~~~~C~~~~~~~~c~~g~~C~~~~~~~~~~C~c~~~~~  348 (487)
T KOG1217|consen  272 DSCALIASCPNGGTCVNVPG---SYRCTCPPGFTGRLCTECVDVDECSPRNAGGPCANGGTCNTLGSFGGFRCACGPGFT  348 (487)
T ss_pred             cccCCCCccCCCCeeecCCC---cceeeCCCCCCCCCCccccccccccccccCCcCCCCcccccCCCCCCCCcCCCCCCC
Confidence            5677764 999999999987   699999999999999  23346784   23389999999  3344688999999999


Q ss_pred             CCCccccc
Q psy9228         641 PPNCAKRV  648 (834)
Q Consensus       641 G~~Ce~~~  648 (834)
                      |..|+...
T Consensus       349 g~~C~~~~  356 (487)
T KOG1217|consen  349 GRRCEDSN  356 (487)
T ss_pred             CCccccCC
Confidence            99999664

>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=98.52  E-value=4.6e-08  Score=64.41  Aligned_cols=32  Identities=44%  Similarity=1.112  Sum_probs=28.6

Q ss_pred             CCCCCCCCCCeecccCCCCCceeeecCCCCCCCC
Q psy9228         571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDH  604 (834)
Q Consensus       571 C~~~pC~ngg~C~~~~~~~~~~~C~C~~G~~G~~  604 (834)
                      |.++||+|+|+|++...  .+|+|.|++||+|++
T Consensus         1 C~~~~C~n~g~C~~~~~--~~y~C~C~~G~~G~~   32 (32)
T PF00008_consen    1 CSSNPCQNGGTCIDLPG--GGYTCECPPGYTGKR   32 (32)
T ss_dssp             TTTTSSTTTEEEEEEST--SEEEEEEBTTEESTT
T ss_pred             CCCCcCCCCeEEEeCCC--CCEEeECCCCCccCC
Confidence            67899999999999992  399999999999974

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....

>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family

Probab=98.48  E-value=5.9e-06  Score=82.22  Aligned_cols=149  Identities=19%  Similarity=0.171  Sum_probs=94.4

Q ss_pred             eeEEcC---CceeeechhhhhhccCcceEEEEEEeCC--CCeeEEecCCCCCCCCCCcceEEEEE-ECCEEEEEEEcCCc
Q psy9228         653 EVHFLG---EGYVELKKELIEERRNEETIAFDFVTDD--KNALLLWNGQPSYKNGIGREFIAVAV-VNGYLEYSYDLGDG  726 (834)
Q Consensus       653 ~~~F~g---~s~~~~~~~~~~~~~~~~~i~~~frT~~--~~GlLl~~~~~~~~~~~~~~~~~l~l-~~G~l~~~~~~g~~  726 (834)
                      .+.|..   ..|+++.+.. ......+++.+++|+..  .++.||..+....    ..++ .+.. .++.+.+.+  ++.
T Consensus         8 ~~~fp~~s~~~yv~l~~~~-~~~l~~fTvc~W~k~~~~~~~~~ifSy~~~~~----~ne~-~~~~~~~~~~~l~i--~g~   79 (206)
T smart00159        8 VFVFPKESDTSYVKLKPEL-PKPLQAFTVCLWFYSDLSPRGYSLFSYATKGQ----DNEL-LLYKEKQGEYSLYI--GGK   79 (206)
T ss_pred             EEECCCCCCCCeEEEccCC-CCChhHEEEEEEEEecCCCCceEEEEEeCCCC----CCeE-EEEEcCCcEEEEEE--cCe
Confidence            456764   4688886543 22357899999999965  5566764333211    1233 3333 366666655  333


Q ss_pred             EEEEEeCCceecCCCcEEEEEEEEC--CEEEEEEcCeeeecccCCCCccceecCCceEEcCcCCCCCCCCCccCCCceEE
Q psy9228         727 VVTIKFSKKPVNDGIKHSVNVTRIN--KFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPNMDLMTGGRYVHPMSGL  804 (834)
Q Consensus       727 ~~~l~~s~~~~nDg~wH~V~i~r~~--~~~~l~VD~~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~~~~~~~~~~~F~GC  804 (834)
                      .  +. ....+.||+||||.+++..  ++++|+|||.... .........+...+.|.||...+.. -........|.|-
T Consensus        80 ~--~~-~~~~~~~g~W~hvc~tw~~~~g~~~lyvnG~~~~-~~~~~~g~~i~~~G~lvlGq~qd~~-gg~f~~~~~f~G~  154 (206)
T smart00159       80 K--VQ-FPVPESDGKWHHICTTWESSSGIAELWVDGKPGV-RKGLAKGYTVKPGGSIILGQEQDSY-GGGFDATQSFVGE  154 (206)
T ss_pred             E--EE-ecccccCCceEEEEEEEECCCCcEEEEECCEEcc-cccccCCcEECCCCEEEEEecccCC-CCCCCCCcceeEE
Confidence            2  23 3456899999999999984  6789999998862 2222222345667889999755431 1112345689999


Q ss_pred             EEEEEECCce
Q psy9228         805 MMNIHIQNKH  814 (834)
Q Consensus       805 i~~v~in~~~  814 (834)
                      |.+|+|.+..
T Consensus       155 i~~v~iw~~~  164 (206)
T smart00159      155 IGDLNMWDSV  164 (206)
T ss_pred             EeeeEEeccc
Confidence            9999998864

This family form a doscoid pentameric structure. Human serum amyloid P demonstrates calcium-mediated ligand-binding.

>KOG1214|consensus

Probab=98.47  E-value=5.1e-07  Score=99.72  Aligned_cols=64  Identities=33%  Similarity=0.816  Sum_probs=50.8

Q ss_pred             CCCCCCCEe--ccCCCCCceEeeCCCCCCCC--CCCCCCCCccCCCCC-CCeeecCCCCeEEeCCCCcccC
Q psy9228         144 NNCINNGLC--QDAATRIGYTCICPPGFSGD--RCSVLGEPCYPGACG-DGSCQDVDGAMKCLCPIGTAGK  209 (834)
Q Consensus       144 ~pC~n~g~C--~~~~~~~~~~C~C~~g~~G~--~Ce~~~~~C~~~~C~-~g~C~~~~~~~~C~C~~g~~G~  209 (834)
                      .-|.-.|.|  +.. ....|+|.|.|||.|.  .| .+.|+|.++.|. +++|.+..++|.|.|.+||.|.
T Consensus       791 h~C~i~g~a~c~~h-Ggs~y~C~CLPGfsGDG~~c-~dvDeC~psrChp~A~CyntpgsfsC~C~pGy~GD  859 (1289)
T KOG1214|consen  791 HTCAIAGQARCVHH-GGSTYSCACLPGFSGDGHQC-TDVDECSPSRCHPAATCYNTPGSFSCRCQPGYYGD  859 (1289)
T ss_pred             cccCcCCceEEEec-CCceEEEeecCCccCCcccc-ccccccCccccCCCceEecCCCcceeecccCccCC
Confidence            445444444  333 3467999999999975  56 355999999998 7999999999999999999874

>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=98.47  E-value=6.6e-08  Score=63.66  Aligned_cols=30  Identities=53%  Similarity=1.188  Sum_probs=26.4

Q ss_pred             CCCCCCCCEeccCCCCCceEeeCCCCCCCCC
Q psy9228         143 HNNCINNGLCQDAATRIGYTCICPPGFSGDR  173 (834)
Q Consensus       143 ~~pC~n~g~C~~~~~~~~~~C~C~~g~~G~~  173 (834)
                      ++||+|+|+|++.. .++|+|.|++||+|++
T Consensus         3 ~~~C~n~g~C~~~~-~~~y~C~C~~G~~G~~   32 (32)
T PF00008_consen    3 SNPCQNGGTCIDLP-GGGYTCECPPGYTGKR   32 (32)
T ss_dssp             TTSSTTTEEEEEES-TSEEEEEEBTTEESTT
T ss_pred             CCcCCCCeEEEeCC-CCCEEeECCCCCccCC
Confidence            88999999999876 5789999999999874

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....

>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity

Probab=98.40  E-value=1.1e-05  Score=80.11  Aligned_cols=149  Identities=19%  Similarity=0.167  Sum_probs=95.3

Q ss_pred             eeEEcC---CceeeechhhhhhccCcceEEEEEEeCC--CCeeEEecCCCCCCCCCCcceEEEEEE-CCEEEEEEEcCCc
Q psy9228         653 EVHFLG---EGYVELKKELIEERRNEETIAFDFVTDD--KNALLLWNGQPSYKNGIGREFIAVAVV-NGYLEYSYDLGDG  726 (834)
Q Consensus       653 ~~~F~g---~s~~~~~~~~~~~~~~~~~i~~~frT~~--~~GlLl~~~~~~~~~~~~~~~~~l~l~-~G~l~~~~~~g~~  726 (834)
                      .+.|..   ..|+++..... .....+++.+++|+..  ..+.||-.+...    . .+.+.+... +|++.|.++  +.
T Consensus         8 ~l~f~~~s~~~yv~l~~~~~-~~l~~fTv~~Wv~~~~~~~~~~ifSy~~~~----~-~~~~~l~~~~~g~~~~~i~--~~   79 (201)
T cd00152           8 VFVFPKESDTSYVKLKPELP-KPLQAFTLCLWVYTDLSTREYSLFSYATKG----Q-DNELLLYKEKDGGYSLYIG--GK   79 (201)
T ss_pred             EEECCCCCCCceEEEccCCC-CChhhEEEEEEEEecCCCCCeEEEEEeCCC----C-CCeEEEEEcCCCeEEEEEc--CE
Confidence            466765   46888865432 2357899999999864  556677333221    1 233444443 678887663  33


Q ss_pred             EEEEEeCCceecCCCcEEEEEEEEC--CEEEEEEcCeeeecccCCCCccceecCCceEEcCcCCCCCCCCCccCCCceEE
Q psy9228         727 VVTIKFSKKPVNDGIKHSVNVTRIN--KFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPNMDLMTGGRYVHPMSGL  804 (834)
Q Consensus       727 ~~~l~~s~~~~nDg~wH~V~i~r~~--~~~~l~VD~~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~~~~~~~~~~~F~GC  804 (834)
                      ...+.   ....||+||||.+++..  ++++|+|||....... ......+...+.|.||...+... ........|.|-
T Consensus        80 ~~~~~---~~~~~g~W~hv~~t~d~~~g~~~lyvnG~~~~~~~-~~~~~~~~~~g~l~lG~~q~~~g-g~~~~~~~f~G~  154 (201)
T cd00152          80 EVTFK---VPESDGAWHHICVTWESTSGIAELWVNGKLSVRKS-LKKGYTVGPGGSIILGQEQDSYG-GGFDATQSFVGE  154 (201)
T ss_pred             EEEEe---ccCCCCCEEEEEEEEECCCCcEEEEECCEEecccc-ccCCCEECCCCeEEEeecccCCC-CCCCCCcceEEE
Confidence            33332   34599999999999984  6789999999875543 22223455667899996543310 011235689999


Q ss_pred             EEEEEECCce
Q psy9228         805 MMNIHIQNKH  814 (834)
Q Consensus       805 i~~v~in~~~  814 (834)
                      |.+|+|.+..
T Consensus       155 I~~v~iw~~~  164 (201)
T cd00152         155 ISDVNMWDSV  164 (201)
T ss_pred             EceeEEEccc
Confidence            9999998853

CRP binds to ligands containing phosphocholine, SAP binds to amyloid fibrils, DNA, chromatin, fibronectin, C4-binding proteins and glycosaminoglycans. "Long" pentraxins have N-terminal extensions to the common pentraxin domain; one group, the neuronal pentraxins, may be involved in synapse formation and remodeling, and they may also be able to form heteromultimers.

>KOG3509|consensus

Probab=98.32  E-value=6.1e-06  Score=96.14  Aligned_cols=137  Identities=25%  Similarity=0.570  Sum_probs=107.1

Q ss_pred             eeCCcccCCCcceeeeeCCCCCCCcCCCCccCCCCccceEEEEEEcCEEEEeecccccccCCC-CC--CccCCCCCCCCC
Q psy9228          71 ESQGAFQGLDLSELVYIGAVPDFGEIHPSAGFSNGFKGCVSRLKYNKTEFELFKMAVERVGVD-SC--NTCKSSKHNNCI  147 (834)
Q Consensus        71 ~~~~~~~g~~~~~~~~~gg~p~~~~~~~~~~~~~gf~gCi~~~~~~~~~~~~~~~~~~~~~~~-~c--~~C~~~~~~pC~  147 (834)
                      .-..-+.+...++.+|+|+.-+..-+++......||.||+..+..+.+.+.........+... .|  +.|.   ..||+
T Consensus       339 ~~~~~~~~i~~ee~v~lg~i~ni~~l~~~~~~~eGf~gci~~~~~~~k~l~~~~~~~~~v~~~~~c~g~~c~---~~p~~  415 (964)
T KOG3509|consen  339 NSNILVSRITNEESVFLGGIINIETLQHNLPLPEGFAGCIRDLVMNLKDLRVTLQRASYVAAQGTCLGDVCW---RIPCQ  415 (964)
T ss_pred             cccccccceeecccccCCceeeeccccccCCCccCccceehhhhhhccccccccccccccccccccCCCccc---cccCC
Confidence            344455666667778899976666677777788999999999999999887654322222222 45  6898   89999


Q ss_pred             CCCEeccCCCCCceEeeCCCCCCCCCCCCCCCCccCCCCC--CCeeecCCCCeEEeCCCCcccCcccc
Q psy9228         148 NNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACG--DGSCQDVDGAMKCLCPIGTAGKRCEQ  213 (834)
Q Consensus       148 n~g~C~~~~~~~~~~C~C~~g~~G~~Ce~~~~~C~~~~C~--~g~C~~~~~~~~C~C~~g~~G~~Ce~  213 (834)
                      +.+.|....  ....|.|++||+|.-|+...+.|...+=.  .++|........+.|.+| .|..+..
T Consensus       416 ~~g~c~p~~--~~~~c~c~~g~~G~~c~d~~~~~~~~~~g~y~~t~~~~~~~~~~~c~pg-~g~~~~~  480 (964)
T KOG3509|consen  416 HDGPCLQTL--EGKQCLCPPGYTGDSCEDCMNGCDRSPNGSYLGTCVPIQGKRCEYCGPG-AGAPTAG  480 (964)
T ss_pred             CCccccccc--cccceeccccccCchhhccCccccccCCccccceEeccCCCcceeecCC-CCCccch
Confidence            999999887  78999999999999999988888886654  489998888888999999 7777644

>smart00210 TSPN Thrombospondin N-terminal -like domains

Probab=98.32  E-value=1.8e-05  Score=77.35  Aligned_cols=124  Identities=11%  Similarity=0.167  Sum_probs=83.6

Q ss_pred             ceeEEEEEEEeeC-CCCeeEEEeccCCccccCCCCCeEEEEEECcEEEEEEec----cc-EEEE-eeeeecCCCeEEEEE
Q psy9228         404 HLHFSIELSFKPT-DYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDV----GL-VVLR-SKVTLVPHEWVVVTI  476 (834)
Q Consensus       404 ~~~~~i~~~frt~-~~~GlLl~~~~~~~~~~~~~~d~~~l~L~~G~l~~~~~~----G~-~~i~-s~~~~~dg~wH~V~v  476 (834)
                      ..+|+|.++||+. ...|.||...+.      +...++.|.+..++..+.+..    |. ..+. ....+.||+||+|.+
T Consensus        51 ~~~fsi~~~~r~~~~~~g~L~si~~~------~~~~~l~v~l~g~~~~~~~~~~~~~g~~~~~~f~~~~l~dg~WH~lal  124 (184)
T smart00210       51 PEDFSLLTTFRQTPKSRGVLFAIYDA------QNVRQFGLEVDGRANTLLLRYQGVDGKQHTVSFRNLPLADGQWHKLAL  124 (184)
T ss_pred             CCCeEEEEEEEeCCCCCeEEEEEEcC------CCcEEEEEEEeCCccEEEEEECCCCCcEEEEeecCCccccCCceEEEE
Confidence            3569999999998 577888876542      356689999987775566543    32 2222 236799999999999


Q ss_pred             EEECCeEEEEECCeeeeeeecCCCccccccCCCceeeccccCCCcccCcCcccccCceeEEeeeEEc
Q psy9228         477 IKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVL  543 (834)
Q Consensus       477 ~~~~~~~~l~VD~~~~~~~~~~g~~~~~l~~~~~l~iGG~~~~~~~~~~~~~~~~gF~GCi~~v~in  543 (834)
                      ...+..++|+||.........+......+...+ ++++|....         ....|.|+|+++.|-
T Consensus       125 ~V~~~~v~LyvDC~~~~~~~l~~~~~~~~~~~g-~~~~g~~~~---------~~~~f~G~lq~l~i~  181 (184)
T smart00210      125 SVSGSSATLYVDCNEIDSRPLDRPGQPPIDTDG-IEVRGAQAA---------DRKPFQGDLQQLKIV  181 (184)
T ss_pred             EEeCCEEEEEECCccccceecCCcccccccccc-eEEEeeccC---------CCCcceEEeEEEEEe
Confidence            999999999999987665443222011233333 344443321         124799999999884

Heparin-binding and cell adhesion domain of thrombospondin

>PF00354 Pentaxin: Pentaxin family; InterPro: IPR001759 Pentaxins (or pentraxins) [, ] are a family of proteins which show, under electron microscopy, a discoid arrangement of five noncovalently bound subunits

Probab=98.26  E-value=1.9e-05  Score=77.32  Aligned_cols=149  Identities=22%  Similarity=0.249  Sum_probs=86.9

Q ss_pred             eEEcC---CceeeechhhhhhccCcceEEEEEEeCCC--CeeEEecCCCCCCCCCCcceEEEEEECCEEEEEEEcCCcEE
Q psy9228         654 VHFLG---EGYVELKKELIEERRNEETIAFDFVTDDK--NALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVV  728 (834)
Q Consensus       654 ~~F~g---~s~~~~~~~~~~~~~~~~~i~~~frT~~~--~GlLl~~~~~~~~~~~~~~~~~l~l~~G~l~~~~~~g~~~~  728 (834)
                      +.|..   ..|+++.+..... ...+++-|++||...  .+.||..+...    ...+++.+.-..+.+.+.+  ++...
T Consensus         3 ~~FP~~s~~~yv~l~~~~~~p-L~~fTvC~w~k~~~~~~~~tifSYat~~----~~nell~~~~~~~~~~l~i--~~~~~   75 (195)
T PF00354_consen    3 FHFPTRSTTDYVRLKPSVPLP-LSAFTVCFWVKTDDSSNDGTIFSYATSS----QDNELLLFGSSSGSLRLYI--NGSSV   75 (195)
T ss_dssp             EEE-S-BSSBEEEEEESS-S--BSEEEEEEEEEESGSGS-EEEEEEEETT----EEEEEEEEEETTTEEEEEE--TTEEE
T ss_pred             EECCCCCCcceEEEecCCCCC-cccEEEEEEEEeccCCCceEEEEEccCC----CCccEEEEEeCCceEEEEE--CCeEe
Confidence            45655   4577776433222 478999999999765  88888444321    1133433322356766655  33333


Q ss_pred             EEEeCCceecCCCcEEEEEEEEC--CEEEEEEcCeeeecccCCCCccceecCCceEEcCcCCCCCCCCCccCCCceEEEE
Q psy9228         729 TIKFSKKPVNDGIKHSVNVTRIN--KFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMM  806 (834)
Q Consensus       729 ~l~~s~~~~nDg~wH~V~i~r~~--~~~~l~VD~~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~~~~~~~~~~~F~GCi~  806 (834)
                      .+   ...+.||+||||-+++..  +.+.|+|||....... ......+...+.+.||--.+.. .-.......|.|=|.
T Consensus        76 ~~---~~~~~~~~Whh~C~tW~s~~G~~~ly~dG~~~~~~~-~~~g~~i~~gG~~vlGQeQd~~-gG~fd~~q~F~G~i~  150 (195)
T PF00354_consen   76 SF---SGPIRDGQWHHICVTWDSSTGRWQLYVDGVRLSSTG-LATGHSIPGGGTLVLGQEQDSY-GGGFDESQAFVGEIS  150 (195)
T ss_dssp             EE---EECS-TSS-EEEEEEEETTTTEEEEEETTEEEEEEE-SSTT--B-SSEEEEESS-BSBT-TBTCSGGGB--EEEE
T ss_pred             Ee---ccccCCCCcEEEEEEEecCCcEEEEEECCEeccccc-ccCCceECCCCEEEECcccccc-CCCcCCccEeeEEEe
Confidence            33   346799999999999986  7899999999543322 2222345566788888655431 112234678999999


Q ss_pred             EEEECCce
Q psy9228         807 NIHIQNKH  814 (834)
Q Consensus       807 ~v~in~~~  814 (834)
                      +|.|.+..
T Consensus       151 ~~~iWd~v  158 (195)
T PF00354_consen  151 DFNIWDRV  158 (195)
T ss_dssp             EEEEESS-
T ss_pred             ceEEEeee
Confidence            99999864

Proteins of the pentaxin family are involved in acute immunological responses []. Three of the principal members of the pentaxin family are serum proteins: namely, C-reactive protein (CRP) [], serum amyloid P component protein (SAP) [], and female protein (FP) []. CRP is expressed during acute phase response to tissue injury or inflammation in mammals. The protein resembles antibody and performs several functions associated with host defence: it promotes agglutination, bacterial capsular swelling and phagocytosis, and activates the classical complement pathway through its calcium-dependent binding to phosphocholine. CRPs have also been sequenced in an invertebrate, Limulus polyphemus (Atlantic horseshoe crab), where they are a normal constituent of the hemolymph. SAP is a vertebrate protein that is a precursor of amyloid component P. It is found in all types of amyloid deposits, in glomerular basement menbrane and in elastic fibres in blood vessels. SAP binds to various lipoprotein ligands in a calcium-dependent manner, and it has been suggested that, in mammals, this may have important implications in atherosclerosis and amyloidosis. FP is a SAP homologue found in Mesocricetus auratus (Golden hamster). The concentration of this plasma protein is altered by sex steroids and stimuli that elicit an acute phase response. Pentaxin proteins expressed in the nervous system are neural pentaxin I (NPI) and II (NPII) []. NPI and NPII are homologous and can exist within one species. It is suggested that both proteins mediate the uptake of synaptic macromolecules and play a role in synaptic plasticity. Apexin, a sperm acrosomal protein, is a homologue of NPII found in Cavia porcellus (Guinea pig) []. PTX3 (or TSG-14) protein is a cytokine-induced protein that is homologous to CRPs and SAPs, but its function is not yet known.; PDB: 2A3W_F 3KQR_C 3D5O_D 2A3X_G 1SAC_D 2W08_B 1GYK_B 1LGN_A 2A3Y_A 1B09_D ....

>KOG1225|consensus

Probab=98.04  E-value=1.4e-05  Score=87.97  Aligned_cols=108  Identities=31%  Similarity=0.691  Sum_probs=74.3

Q ss_pred             ceeeeeCCcccCCCcceeeeeCCCCCCCcCCCCccCCCCccceEEEEEEcCEEEEeecccccccCCCCCCc--cCCCCCC
Q psy9228          67 PFSGESQGAFQGLDLSELVYIGAVPDFGEIHPSAGFSNGFKGCVSRLKYNKTEFELFKMAVERVGVDSCNT--CKSSKHN  144 (834)
Q Consensus        67 ~~~~~~~~~~~g~~~~~~~~~gg~p~~~~~~~~~~~~~gf~gCi~~~~~~~~~~~~~~~~~~~~~~~~c~~--C~~~~~~  144 (834)
                      ...|.|+.+|.|.+|.....-++.      .....+.+|+  ||+..               .+...+|++  |.    .
T Consensus       233 ~~ic~c~~~~~g~~c~~~~C~~~c------~~~g~c~~G~--CIC~~---------------Gf~G~dC~e~~Cp----~  285 (525)
T KOG1225|consen  233 DGICECPEGYFGPLCSTIYCPGGC------TGRGQCVEGR--CICPP---------------GFTGDDCDELVCP----V  285 (525)
T ss_pred             CceeecCCceeCCccccccCCCCC------cccceEeCCe--EeCCC---------------CCcCCCCCcccCC----c
Confidence            337999999999999854422211      0001122222  44332               333466764  75    4


Q ss_pred             CCCCCCEeccCCCCCceEeeCCCCCCCCCCCCCCCCccCCCCC-CCeeecCCCCeEEeCCCCcccCccccc
Q psy9228         145 NCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACG-DGSCQDVDGAMKCLCPIGTAGKRCEQK  214 (834)
Q Consensus       145 pC~n~g~C~~~~~~~~~~C~C~~g~~G~~Ce~~~~~C~~~~C~-~g~C~~~~~~~~C~C~~g~~G~~Ce~~  214 (834)
                      +|..++.|++.      .|.|++||.|+.|+...  |. .+|. +|.|+    .-+|.|.+||+|..|++.
T Consensus       286 ~cs~~g~~~~g------~CiC~~g~~G~dCs~~~--cp-adC~g~G~Ci----~G~C~C~~Gy~G~~C~~~  343 (525)
T KOG1225|consen  286 DCSGGGVCVDG------ECICNPGYSGKDCSIRR--CP-ADCSGHGKCI----DGECLCDEGYTGELCIQR  343 (525)
T ss_pred             ccCCCceecCC------EeecCCCcccccccccc--CC-ccCCCCCccc----CCceEeCCCCcCCccccc
Confidence            49999999863      79999999999997654  54 7898 59999    347999999999999875

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.04  E-value=7e-06  Score=65.94  Aligned_cols=44  Identities=32%  Similarity=0.645  Sum_probs=37.6

Q ss_pred             CcEEEEecCC-CCCcccc--CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA--EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~--~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++++|.|.++ +|..+..  .++.|+|.+|+.+|+|.|.|.+.|..+
T Consensus        13 p~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G   59 (69)
T cd05725          13 PTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVG   59 (69)
T ss_pred             CEEEEEECCccCCCCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCC
Confidence            4799999877 8776544  578999999999999999999998765

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>KOG1225|consensus

Probab=98.03  E-value=1.2e-05  Score=88.58  Aligned_cols=107  Identities=29%  Similarity=0.653  Sum_probs=72.3

Q ss_pred             ceeEEEcCCcceeeeeCCcccCCCcceeeeeCCCCCCCcCCCCccCCCCccceEEEEEEcCEEEEeecccccccCCCCCC
Q psy9228          57 ERMMFVDGIGPFSGESQGAFQGLDLSELVYIGAVPDFGEIHPSAGFSNGFKGCVSRLKYNKTEFELFKMAVERVGVDSCN  136 (834)
Q Consensus        57 ~g~~cvd~~~~~~~~~~~~~~g~~~~~~~~~gg~p~~~~~~~~~~~~~gf~gCi~~~~~~~~~~~~~~~~~~~~~~~~c~  136 (834)
                      +.+.|+++.    |.|++||+|.+|+....    |.  .++....+.+|  -||+.-.+-|+.+.+             .
T Consensus       258 ~~g~c~~G~----CIC~~Gf~G~dC~e~~C----p~--~cs~~g~~~~g--~CiC~~g~~G~dCs~-------------~  312 (525)
T KOG1225|consen  258 GRGQCVEGR----CICPPGFTGDDCDELVC----PV--DCSGGGVCVDG--ECICNPGYSGKDCSI-------------R  312 (525)
T ss_pred             ccceEeCCe----EeCCCCCcCCCCCcccC----Cc--ccCCCceecCC--EeecCCCcccccccc-------------c
Confidence            446789887    99999999999997441    11  11111111222  244433333333322             1


Q ss_pred             ccCCCCCCCCCCCCEeccCCCCCceEeeCCCCCCCCCCCCCCCCccCCCCCC-CeeecCCCCeEEeCCCCcccCc
Q psy9228         137 TCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGD-GSCQDVDGAMKCLCPIGTAGKR  210 (834)
Q Consensus       137 ~C~~~~~~pC~n~g~C~~~~~~~~~~C~C~~g~~G~~Ce~~~~~C~~~~C~~-g~C~~~~~~~~C~C~~g~~G~~  210 (834)
                      .|    +.+|.++|.|++.      +|.|.+||+|..|+..       +|.+ |.|++.     |.|..||.|+.
T Consensus       313 ~c----padC~g~G~Ci~G------~C~C~~Gy~G~~C~~~-------~C~~~g~cv~g-----C~C~~Gw~G~d  365 (525)
T KOG1225|consen  313 RC----PADCSGHGKCIDG------ECLCDEGYTGELCIQR-------ACSGGGQCVNG-----CKCKKGWRGPD  365 (525)
T ss_pred             cC----CccCCCCCcccCC------ceEeCCCCcCCccccc-------ccCCCceeccC-----ceeccCccCCC
Confidence            24    5789999999953      6999999999999876       3776 678753     99999999998

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=97.96  E-value=1.1e-05  Score=65.51  Aligned_cols=44  Identities=23%  Similarity=0.405  Sum_probs=35.9

Q ss_pred             CcEEEEecCC-CCCcccc---CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA---EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~---~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.+. |....+.   .++.|.|.+|+.+|+|.|.|.++|..+
T Consensus        16 p~v~W~k~~~~l~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G   63 (73)
T cd05852          16 PKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAENNRG   63 (73)
T ss_pred             CEEEEEeCCEecccCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCC
Confidence            4899999666 5443333   578999999999999999999998875

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=97.94  E-value=1.4e-05  Score=64.62  Aligned_cols=44  Identities=27%  Similarity=0.611  Sum_probs=36.8

Q ss_pred             CcEEEEecCC-CCCcccc---CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA---EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~---~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.++ ++..+..   .++.|+|++|+.+|+|.|.|.+.|..|
T Consensus        13 P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G   60 (71)
T cd05876          13 PEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEG   60 (71)
T ss_pred             CeEEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCC
Confidence            4899999887 6654332   578999999999999999999998876

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>smart00179 EGF_CA Calcium-binding EGF-like domain

Probab=97.91  E-value=1.3e-05  Score=55.94  Aligned_cols=36  Identities=33%  Similarity=0.922  Sum_probs=29.4

Q ss_pred             CCCCccC-CCCCC-CeeecCCCCeEEeCCCCcc-cCccc
Q psy9228         177 LGEPCYP-GACGD-GSCQDVDGAMKCLCPIGTA-GKRCE  212 (834)
Q Consensus       177 ~~~~C~~-~~C~~-g~C~~~~~~~~C~C~~g~~-G~~Ce  212 (834)
                      ++++|.. .||.+ |+|++..++|.|.|+.||. |..|+
T Consensus         1 d~~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~~g~~C~   39 (39)
T smart00179        1 DIDECASGNPCQNGGTCVNTVGSYRCECPPGYTDGRNCE   39 (39)
T ss_pred             CcccCcCCCCcCCCCEeECCCCCeEeECCCCCccCCcCC
Confidence            3578887 78885 6899888889999999988 88875

>KOG1217|consensus

Probab=97.90  E-value=4.9e-05  Score=87.18  Aligned_cols=171  Identities=23%  Similarity=0.462  Sum_probs=105.1

Q ss_pred             CCeeEEEEEcCCCCccC---C-cEEEEc----CceeEEEcCCcceeeeeCCcccCCCcceeeeeCCCCCCCcCCCCccCC
Q psy9228          32 DSGKYKCEIQGHDSFRG---S-DYVKLN----VERMMFVDGIGPFSGESQGAFQGLDLSELVYIGAVPDFGEIHPSAGFS  103 (834)
Q Consensus        32 d~g~y~c~~~~~~~~~~---~-~~~~~~----~~g~~cvd~~~~~~~~~~~~~~g~~~~~~~~~gg~p~~~~~~~~~~~~  103 (834)
                      ..+.|.|.+..++.-..   . +.|...    .++.+|++....|.|.|+++|.+..++.. -.++.....   ......
T Consensus       148 ~~~~~~c~C~~g~~~~~~~~~~~~C~~~~~~c~~~~~C~~~~~~~~C~c~~~~~~~~~~~~-~~~~~c~~~---~~~~~~  223 (487)
T KOG1217|consen  148 SVGPFRCSCTEGYEGEPCETDLDECIQYSSPCQNGGTCVNTGGSYLCSCPPGYTGSTCETT-GNGGTCVDS---VACSCP  223 (487)
T ss_pred             CCCceeeeeCCCcccccccccccccccCCCCcCCCcccccCCCCeeEeCCCCccCCcCcCC-CCCceEecc---eeccCC
Confidence            77888888888864211   1 355422    68899999999999999999999988765 000000000   000001


Q ss_pred             CCccc--eEE------------EEEEcCEEEEeecccccccCC-----CCCCccCCCCCC-CCCCCCEeccCCCCCceEe
Q psy9228         104 NGFKG--CVS------------RLKYNKTEFELFKMAVERVGV-----DSCNTCKSSKHN-NCINNGLCQDAATRIGYTC  163 (834)
Q Consensus       104 ~gf~g--Ci~------------~~~~~~~~~~~~~~~~~~~~~-----~~c~~C~~~~~~-pC~n~g~C~~~~~~~~~~C  163 (834)
                      .|+.+  |..            .....+..+..   .....+.     ..-+.|.   .. +|.|+++|.+..  +.|.|
T Consensus       224 ~g~~~~~c~~~~~~~~~~~~~c~~~~~~~~C~~---~~g~~~~~~~~~~~~~~C~---~~~~c~~~~~C~~~~--~~~~C  295 (487)
T KOG1217|consen  224 PGARGPECEVSIVECASGDGTCVNTVGSYTCRC---PEGYTGDACVTCVDVDSCA---LIASCPNGGTCVNVP--GSYRC  295 (487)
T ss_pred             CCCCCCCcccccccccCCCCcccccCCceeeeC---CCCccccccceeeeccccC---CCCccCCCCeeecCC--Cccee
Confidence            11110  000            00000111111   0001111     1226787   55 399999999976  66999


Q ss_pred             eCCCCCCCCCC--CCCCCCc----cCCCCCC-Ceee--cCCCCeEEeCCCCcccCccccc
Q psy9228         164 ICPPGFSGDRC--SVLGEPC----YPGACGD-GSCQ--DVDGAMKCLCPIGTAGKRCEQK  214 (834)
Q Consensus       164 ~C~~g~~G~~C--e~~~~~C----~~~~C~~-g~C~--~~~~~~~C~C~~g~~G~~Ce~~  214 (834)
                      .|++||+|..|  ..+.++|    ...+|.+ ++|.  +....+.|.|+.++.|..|+..
T Consensus       296 ~C~~g~~g~~~~~~~~~~~C~~~~~~~~c~~g~~C~~~~~~~~~~C~c~~~~~g~~C~~~  355 (487)
T KOG1217|consen  296 TCPPGFTGRLCTECVDVDECSPRNAGGPCANGGTCNTLGSFGGFRCACGPGFTGRRCEDS  355 (487)
T ss_pred             eCCCCCCCCCCccccccccccccccCCcCCCCcccccCCCCCCCCcCCCCCCCCCccccC
Confidence            99999999999  3355788    4678987 4893  3446889999999999999865

>KOG0994|consensus

Probab=97.89  E-value=0.00047  Score=79.53  Aligned_cols=67  Identities=30%  Similarity=0.667  Sum_probs=44.5

Q ss_pred             CeecccCCCCCceeee-cCCCCCCCCCccCccCCCCCCccCCCc--------eeeec--CCCcEEcCCCCCCCCCcccc
Q psy9228         580 GICYPTDTSERGYNCS-CLTGYSGDHCEKENNMCMKGDVCKNGG--------MCKVT--PDSYECLCSLGYAPPNCAKR  647 (834)
Q Consensus       580 g~C~~~~~~~~~~~C~-C~~G~~G~~Ce~~~~~C~~~~pC~ngg--------~C~~~--~~~~~C~C~~g~~G~~Ce~~  647 (834)
                      |.|++-.++..++.|+ |..||.|.-=--.-..|.+= ||..+-        +|.-.  .....|.|.+||+|.+||.-
T Consensus       873 GaCi~CqD~T~G~~CdrCl~GyyGdP~lg~g~~CrPC-pCP~gp~Sg~~~A~sC~~d~~t~~ivC~C~~GY~G~RCe~C  950 (1758)
T KOG0994|consen  873 GACIDCQDSTTGHSCDRCLDGYYGDPRLGSGIGCRPC-PCPDGPASGRQHADSCYLDTRTQQIVCHCQEGYSGSRCEIC  950 (1758)
T ss_pred             cccccccccccccchhhhhccccCCcccCCCCCCCCC-CCCCCCccchhccccccccccccceeeecccCccccchhhh
Confidence            6777776666788887 88999874221112234433 675442        35433  25678999999999999864

>smart00179 EGF_CA Calcium-binding EGF-like domain

Probab=97.88  E-value=1.5e-05  Score=55.73  Aligned_cols=36  Identities=42%  Similarity=0.936  Sum_probs=32.3

Q ss_pred             ccCCCC-CCccCCCceeeecCCCcEEcCCCCCC-CCCcc
Q psy9228         609 NNMCMK-GDVCKNGGMCKVTPDSYECLCSLGYA-PPNCA  645 (834)
Q Consensus       609 ~~~C~~-~~pC~ngg~C~~~~~~~~C~C~~g~~-G~~Ce  645 (834)
                      +++|.. . ||.++|+|++..++|.|.|++||. |..|+
T Consensus         2 ~~~C~~~~-~C~~~~~C~~~~g~~~C~C~~g~~~g~~C~   39 (39)
T smart00179        2 IDECASGN-PCQNGGTCVNTVGSYRCECPPGYTDGRNCE   39 (39)
T ss_pred             cccCcCCC-CcCCCCEeECCCCCeEeECCCCCccCCcCC
Confidence            467876 5 999999999999999999999999 99885

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=97.87  E-value=1.7e-05  Score=64.60  Aligned_cols=44  Identities=27%  Similarity=0.608  Sum_probs=36.5

Q ss_pred             CcEEEEecCC-CCCcccc---CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA---EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~---~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.+. |+...+.   .++.|+|.+|+.+|+|.|.|.+.|.-+
T Consensus        17 p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G   64 (74)
T cd05745          17 PVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVNIVG   64 (74)
T ss_pred             CEEEEEECCEECCCCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCC
Confidence            4899999666 7665433   578999999999999999999998765

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=97.85  E-value=1.7e-05  Score=62.76  Aligned_cols=42  Identities=12%  Similarity=0.253  Sum_probs=34.7

Q ss_pred             CcEEEEecCC-CCCccccCCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYAEGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      +++.|.|++. |..  +..++.|.|.+|+.+|+|.|.|.++|..+
T Consensus        13 P~v~W~kdg~~l~~--~~~~~~L~i~~v~~~D~G~YtC~a~N~~g   55 (67)
T cd05863          13 PEFQWYKDGKLISG--KHSQHSLQIKDVTEASAGTYTLVLWNSAA   55 (67)
T ss_pred             CEEEEEECCEECcc--cCCcCEEEECCCCHHHCEEEEEEEEECCc
Confidence            4799999554 753  33567999999999999999999998865

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A

Probab=97.82  E-value=0.00044  Score=65.40  Aligned_cols=139  Identities=20%  Similarity=0.310  Sum_probs=85.1

Q ss_pred             cccccccCCccccceeEEEEEEEeeCCCCe--eEEEeccCCccccCCCCCeEEEEEE-CcEEEEEEeccc---EEEEeee
Q psy9228         391 PLSYLALPTLTDAHLHFSIELSFKPTDYNG--LIMYTGDSNMKSYKGKGDFVSFGLE-DGYPVFRFDVGL---VVLRSKV  464 (834)
Q Consensus       391 ~~s~l~~~~~~~~~~~~~i~~~frt~~~~G--lLl~~~~~~~~~~~~~~d~~~l~L~-~G~l~~~~~~G~---~~i~s~~  464 (834)
                      ..+|+.+|........++|+++||......  .++...       ....+.+.+.+. ++++.+.+..+.   ..+....
T Consensus         8 ~~~~i~~~~~~~~~~~fTi~~w~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~   80 (157)
T PF13385_consen    8 SNDYISIPNSDFPSGSFTISFWVKPDSPSSSQSFVFMD-------SSGSGGFGLFINNNGRLRFYIGNGGGGNYSFSSDS   80 (157)
T ss_dssp             TT-EEEEESGGGGGTEEEEEEEEEESS--SSEEEEEES-------SSSSEEEEEEEETTSEEEEEETTSEEESS-EE-BS
T ss_pred             CCCEEEECCcCCCCCCEEEEEEEEeCCCCCCceEEEEe-------cCCCCEEEEEEECCCEEEEEEeCCCceeEEEecCc
Confidence            367777776444467899999999887432  233321       122346667675 477777765542   4556777


Q ss_pred             eecCCCeEEEEEEEECCeEEEEECCeeeeeeecCCCccccccCCCceeeccccCCCcccCcCcccccCceeEEeeeEEcC
Q psy9228         465 TLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLG  544 (834)
Q Consensus       465 ~~~dg~wH~V~v~~~~~~~~l~VD~~~~~~~~~~g~~~~~l~~~~~l~iGG~~~~~~~~~~~~~~~~gF~GCi~~v~ing  544 (834)
                      .+.+++||+|.+......++|+||+........+..  ........++||+....          ...|.|-|.++++-.
T Consensus        81 ~~~~~~W~~l~~~~~~~~~~lyvnG~~~~~~~~~~~--~~~~~~~~~~iG~~~~~----------~~~~~g~i~~~~i~~  148 (157)
T PF13385_consen   81 NLPDNKWHHLALTYDGSTVTLYVNGELVGSSTIPSN--ISLNSNGPLFIGGSGGG----------SSPFNGYIDDLRIYN  148 (157)
T ss_dssp             ---TT-EEEEEEEEETTEEEEEETTEEETTCTEESS--SSTTSCCEEEESS-STT------------B-EEEEEEEEEES
T ss_pred             ccCCCCEEEEEEEEECCeEEEEECCEEEEeEeccCC--cCCCCcceEEEeecCCC----------CCceEEEEEEEEEEC
Confidence            899999999999999999999999987655433222  12345668899986531          467999999999966


Q ss_pred             eeee
Q psy9228         545 SELD  548 (834)
Q Consensus       545 ~~~~  548 (834)
                      +.+.
T Consensus       149 ~aLt  152 (157)
T PF13385_consen  149 RALT  152 (157)
T ss_dssp             S---
T ss_pred             ccCC
Confidence            5543

...

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=97.80  E-value=3.2e-05  Score=65.44  Aligned_cols=44  Identities=30%  Similarity=0.607  Sum_probs=37.4

Q ss_pred             CcEEEEecCC-CCCcccc--CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA--EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~--~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.+. ++...+.  .++.|.|.+|+.+|+|.|.|.+.|.-|
T Consensus        31 P~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G   77 (88)
T cd05851          31 PVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTYECEAENIKG   77 (88)
T ss_pred             CEEEEEECCcCCCCCCEEecCCCEEEECcCChhhCEEEEEEEEcCCC
Confidence            4799999777 8775443  577999999999999999999998876

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=97.79  E-value=2.3e-05  Score=62.85  Aligned_cols=44  Identities=20%  Similarity=0.357  Sum_probs=36.5

Q ss_pred             CcEEEEecCC-CCCcccc-CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA-EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~-~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++++|.|.+. |....+. .+..|+|.+++.+|+|.|.|.++|..|
T Consensus        13 P~v~W~k~g~~l~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~G   58 (70)
T cd05864          13 PEVKWYKNGQLIVLNHTFKRGVHLTIYEVTEKDAGNYTVVLTNPIT   58 (70)
T ss_pred             CEEEEEECCEECCCCCEEccCCEEEECcCCHHHCEEEEEEEEECCC
Confidence            4799999666 7665444 466899999999999999999998875

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=97.79  E-value=2.4e-05  Score=62.93  Aligned_cols=42  Identities=17%  Similarity=0.230  Sum_probs=34.4

Q ss_pred             CcEEEEecCC-CCCccc---cCCCeEEEcccCCCCCeeEEEEEcCC
Q psy9228           2 AYIKWSRADG-LPLQRY---AEGNVLRITNARLQDSGKYKCEIQGH   43 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~---~~~~~l~~~~~~~~d~g~y~c~~~~~   43 (834)
                      +++.|.|++. |+....   ..+..|.|.+|+.+|+|.|.|.+.+.
T Consensus        13 P~v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~   58 (72)
T cd07702          13 PEVIWLKDGLPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLGIK   58 (72)
T ss_pred             CeEEEEECCEECCCCCcEEEeCCCEEEECcCCHHHCEEEEEEEEcc
Confidence            5899999766 765422   25679999999999999999999876

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=97.78  E-value=3.8e-05  Score=61.59  Aligned_cols=44  Identities=18%  Similarity=0.373  Sum_probs=35.3

Q ss_pred             CcEEEEecCC-CCCcccc---CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA---EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~---~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.+. |....+.   .++.|.|.+|+.+|+|.|.|.+.|..|
T Consensus        13 p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G   60 (69)
T cd05746          13 PTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIG   60 (69)
T ss_pred             CEEEEEECCEECCCCCCEEECCCCEEEECcCChhhCEEEEEEEECCCC
Confidence            4799999555 6543222   478999999999999999999998876

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=97.75  E-value=3.5e-05  Score=62.19  Aligned_cols=44  Identities=18%  Similarity=0.446  Sum_probs=35.7

Q ss_pred             CcEEEEecCC-CCCcccc--CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA--EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~--~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++++|.|++. |....+.  .+..|+|.+|+.+|+|.|.|.+.|..+
T Consensus        13 p~v~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g   59 (71)
T cd04976          13 PEIQWYKNGKLISEKNRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQA   59 (71)
T ss_pred             CEEEEEECCEECCCCCEEEcCCCEEEECcCCHHHCEEEEEEEEcCCc
Confidence            5799999555 6654333  578999999999999999999998765

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=97.75  E-value=3.3e-05  Score=62.32  Aligned_cols=44  Identities=30%  Similarity=0.591  Sum_probs=36.5

Q ss_pred             CcEEEEecCC-CCCcccc---CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA---EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~---~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++++|.|.++ ++..+..   .+..|+|.+|+.+|+|.|.|.+.|..+
T Consensus        13 p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G   60 (71)
T cd05731          13 PEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLG   60 (71)
T ss_pred             CeEEEEECCeECCCCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCc
Confidence            4799999888 7664332   467999999999999999999998765

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=97.74  E-value=4.5e-05  Score=61.54  Aligned_cols=44  Identities=18%  Similarity=0.449  Sum_probs=35.3

Q ss_pred             CcEEEEecCC-C-CCcccc--CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-L-PLQRYA--EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~-~~~~~~--~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.+. + |..+..  .++.|.|.+|+.+|+|.|.|.+.|..|
T Consensus        14 p~v~W~k~g~~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G   61 (71)
T cd05723          14 PTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVG   61 (71)
T ss_pred             CEEEEEECCeECCCCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCC
Confidence            5899999777 4 433322  467899999999999999999998876

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=97.73  E-value=6.3e-05  Score=61.48  Aligned_cols=44  Identities=30%  Similarity=0.677  Sum_probs=35.0

Q ss_pred             CcEEEEecCC--CCCccc--c----CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG--LPLQRY--A----EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~--~~~~~~--~----~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.++  +|....  .    .++.|.|.+++.+|+|.|.|.+.|..+
T Consensus        13 P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G   64 (75)
T cd05763          13 PQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAG   64 (75)
T ss_pred             CEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCC
Confidence            4799999775  555322  1    467999999999999999999988765

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>PF02973 Sialidase: Sialidase, N-terminal domain; InterPro: IPR004124 O-Glycosyl hydrolases 3

Probab=97.70  E-value=0.00099  Score=63.75  Aligned_cols=133  Identities=23%  Similarity=0.231  Sum_probs=86.1

Q ss_pred             CcceEEEEEEeCCCCe--eEEecCCCCCCCCCCcceEEEEEECCEEEEEEEcCCcEE-EEEeC-----CceecCCCcEEE
Q psy9228         674 NEETIAFDFVTDDKNA--LLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVV-TIKFS-----KKPVNDGIKHSV  745 (834)
Q Consensus       674 ~~~~i~~~frT~~~~G--lLl~~~~~~~~~~~~~~~~~l~l~~G~l~~~~~~g~~~~-~l~~s-----~~~~nDg~wH~V  745 (834)
                      ...+|-++||+....+  -||.++...    ....|+.|++.++.+-+.++-..+.. .....     +...++-.||.|
T Consensus        33 ~~gTI~i~Fk~~~~~~~~sLfsiSn~~----~~n~YF~lyv~~~~~G~E~R~~~~~~~y~~~~~~~v~~~~~~~~~~~tv  108 (190)
T PF02973_consen   33 EEGTIVIRFKSDSNSGIQSLFSISNST----KGNEYFSLYVSNNKLGFELRDTKGNQNYNFSRPAKVRGGYKNNVTFNTV  108 (190)
T ss_dssp             SSEEEEEEEEESS-SSEEEEEEEE-TS----TTSEEEEEEEETTEEEEEEEETTTTCEEEEEESSE--SEETTEES-EEE
T ss_pred             cccEEEEEEecCCCcceeEEEEecCCC----CccceEEEEEECCEEEEEEecCCCCcccccccccEecccccCCceEEEE
Confidence            6679999999977665  366666543    34689999999998888887655522 21112     234567789999


Q ss_pred             EEEEE--CCEEEEEEcCeeeecccCCCCcc--ceecCCceEEcCcCCCCCCCCCccCCCceEEEEEEEECCcee
Q psy9228         746 NVTRI--NKFGSLEVDSVIVGKGESPGSQD--VINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNIHIQNKHI  815 (834)
Q Consensus       746 ~i~r~--~~~~~l~VD~~~~~~~~~~~~~~--~l~~~~~lyiGG~p~~~~~~~~~~~~~F~GCi~~v~in~~~~  815 (834)
                      .+.-.  .+..+|+|||+.+..........  .+.-...++|||....     +...-+|.|=|++|+|-+..+
T Consensus       109 a~~ad~~~~~ykly~NG~~v~~~~~~~~~Fis~i~~~n~~~iG~t~R~-----g~~~y~f~G~I~~l~iYn~aL  177 (190)
T PF02973_consen  109 AFVADSKNKGYKLYVNGELVSTLSSKSGNFISDIPGLNSVQIGGTNRA-----GSNAYPFNGTIDNLKIYNRAL  177 (190)
T ss_dssp             EEEEETTTTEEEEEETTCEEEEEEECTSS-GGGSTT--EEEESSEEET-----TEEES--EEEEEEEEEESS--
T ss_pred             EEEEecCCCeEEEEeCCeeEEEeccccccHhhcCcCCceEEEcceEeC-----CCceecccceEEEEEEEcCcC
Confidence            99998  78999999996665432222211  2222246999996432     335678999999999987644

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Sialidases (GH33 from CAZY) hydrolyse alpha-(2->3)-, alpha-(2->6)-, alpha-(2->8)-glycosidic linkages of terminal sialic residues in oligosaccharides, glycoproteins, glycolipids, colominic acid and synthetic substrates. Sialidases may act as pathogenic factors in microbial infections []. The 1.8 A structure of trans-sialidase from leech (Macrobdella decora, Q27701 from SWISSPROT) in complex with 2-deoxy-2, 3-didehydro-NeuAc was solved. The refined model comprising residues 81-769 has a catalytic beta-propeller domain, a N-terminal lectin-like domain and an irregular beta-stranded domain inserted into the catalytic domain [].; GO: 0004308 exo-alpha-sialidase activity, 0005975 carbohydrate metabolic process; PDB: 2JKB_A 2VW2_A 2VW0_A 2VW1_A 2V73_B 2V72_A 1SLI_A 1SLL_A 2SLI_A 4SLI_A ....

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=97.70  E-value=6.4e-05  Score=61.76  Aligned_cols=44  Identities=23%  Similarity=0.308  Sum_probs=35.2

Q ss_pred             CcEEEEecCC-CCCccc---c--CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRY---A--EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~---~--~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.+. |+....   .  .++.|.|++++.+|+|.|.|.+.|..|
T Consensus        13 p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G   62 (77)
T cd05760          13 PTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFG   62 (77)
T ss_pred             CcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCC
Confidence            4799999666 755421   1  356899999999999999999998765

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

Probab=97.70  E-value=4.5e-05  Score=52.82  Aligned_cols=35  Identities=40%  Similarity=1.135  Sum_probs=29.1

Q ss_pred             CccCCCCC-CCCCCCCEeccCCCCCceEeeCCCCCCCCCCC
Q psy9228         136 NTCKSSKH-NNCINNGLCQDAATRIGYTCICPPGFSGDRCS  175 (834)
Q Consensus       136 ~~C~~~~~-~pC~n~g~C~~~~~~~~~~C~C~~g~~G~~Ce  175 (834)
                      ++|.   . .||.++++|.+..  ++|.|.|++||.|..|+
T Consensus         3 ~~C~---~~~~C~~~~~C~~~~--~~~~C~C~~g~~g~~C~   38 (38)
T cd00054           3 DECA---SGNPCQNGGTCVNTV--GSYRCSCPPGYTGRNCE   38 (38)
T ss_pred             ccCC---CCCCcCCCCEeECCC--CCeEeECCCCCcCCcCC
Confidence            4566   5 7899999999876  78999999999998874

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=97.69  E-value=5.3e-05  Score=61.54  Aligned_cols=44  Identities=27%  Similarity=0.418  Sum_probs=36.1

Q ss_pred             CcEEEEecCC-CCCcccc---CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA---EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~---~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++++|.|.+. |....+.   .++.|.|.+|+.+|+|.|.|.+.|..+
T Consensus        16 p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G   63 (73)
T cd04969          16 PTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFG   63 (73)
T ss_pred             CEEEEEECCEEcccCCCEEECCCCeEEEccCChhHCEEEEEEEECCCC
Confidence            5899999766 6544333   467899999999999999999998875

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=97.67  E-value=6.3e-05  Score=61.62  Aligned_cols=44  Identities=16%  Similarity=0.300  Sum_probs=36.0

Q ss_pred             CcEEEEecCC-CCCcccc-----------CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA-----------EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~-----------~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.+. |+...+.           ..+.|+|.++..+|+|.|+|.|+|..|
T Consensus        13 Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G   68 (79)
T cd05855          13 PTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYG   68 (79)
T ss_pred             CceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCc
Confidence            5899999666 8765542           124799999999999999999999876

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=97.65  E-value=6.2e-05  Score=61.33  Aligned_cols=44  Identities=20%  Similarity=0.361  Sum_probs=34.3

Q ss_pred             CcEEEEecCC-CCCc-ccc---CC--C--eEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQ-RYA---EG--N--VLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~-~~~---~~--~--~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|.|.|.++ |+.. .+.   .+  +  .|.|.+|+.+|+|.|.|.+.|..|
T Consensus        13 P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G   65 (75)
T cd05893          13 PQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAG   65 (75)
T ss_pred             CEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCC
Confidence            5899999777 7642 222   12  2  699999999999999999998875

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=97.64  E-value=7.4e-05  Score=61.23  Aligned_cols=44  Identities=23%  Similarity=0.451  Sum_probs=34.9

Q ss_pred             CcEEEEecCC-CCCc-----cccCCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQ-----RYAEGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~-----~~~~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.+. |...     ....++.|.|++++.+|+|.|.|.+.|..|
T Consensus        16 p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G   65 (76)
T cd05867          16 PNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHG   65 (76)
T ss_pred             CeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCC
Confidence            4799999555 6542     122578999999999999999999998765

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=97.63  E-value=7e-05  Score=62.06  Aligned_cols=44  Identities=16%  Similarity=0.288  Sum_probs=34.7

Q ss_pred             CcEEEEecCC-CCCcccc-------------CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA-------------EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~-------------~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.+. |....+.             ..+.|+|.+++.+|+|.|+|.++|..|
T Consensus        13 P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G   70 (81)
T cd04971          13 PTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYG   70 (81)
T ss_pred             CcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCC
Confidence            5899999555 6554322             134799999999999999999999876

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=97.63  E-value=8.9e-05  Score=60.36  Aligned_cols=44  Identities=23%  Similarity=0.372  Sum_probs=35.0

Q ss_pred             CcEEEEecCC-CC--Ccccc---CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LP--LQRYA---EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~--~~~~~---~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|.|.|++. |.  ...+.   .++.|.|.+++.+|+|.|.|.+.|..|
T Consensus        13 p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G   62 (74)
T cd05738          13 PEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAG   62 (74)
T ss_pred             CEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCC
Confidence            4799999665 65  22222   467999999999999999999998765

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=97.60  E-value=9.4e-05  Score=60.24  Aligned_cols=44  Identities=30%  Similarity=0.469  Sum_probs=35.1

Q ss_pred             CcEEEEecCC-CCCcccc------CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA------EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~------~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      +++.|.|.+. |....+.      ....|+|.+++.+|+|.|+|.+.|..|
T Consensus        14 p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G   64 (74)
T cd05748          14 PTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAG   64 (74)
T ss_pred             CeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCc
Confidence            5899999666 7443322      246899999999999999999998876

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

Probab=97.60  E-value=7.5e-05  Score=51.66  Aligned_cols=36  Identities=42%  Similarity=0.943  Sum_probs=31.8

Q ss_pred             ccCCCC-CCccCCCceeeecCCCcEEcCCCCCCCCCcc
Q psy9228         609 NNMCMK-GDVCKNGGMCKVTPDSYECLCSLGYAPPNCA  645 (834)
Q Consensus       609 ~~~C~~-~~pC~ngg~C~~~~~~~~C~C~~g~~G~~Ce  645 (834)
                      +++|.. . ||.+++.|.+..++|.|.|++||.|..|+
T Consensus         2 ~~~C~~~~-~C~~~~~C~~~~~~~~C~C~~g~~g~~C~   38 (38)
T cd00054           2 IDECASGN-PCQNGGTCVNTVGSYRCSCPPGYTGRNCE   38 (38)
T ss_pred             cccCCCCC-CcCCCCEeECCCCCeEeECCCCCcCCcCC
Confidence            356766 5 99999999999999999999999999885

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=97.60  E-value=0.0001  Score=60.92  Aligned_cols=44  Identities=25%  Similarity=0.455  Sum_probs=35.1

Q ss_pred             CcEEEEecCC-CCCcccc--CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA--EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~--~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|.|.|.+. |+...+.  .++.|.|.+++.+|+|.|.|.+.|..+
T Consensus        23 ~~v~W~k~g~~l~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g   69 (79)
T cd04973          23 QSINWTKDGVQLGENNRTRITGEEVQIKDAVPRDSGLYACVTSSPSG   69 (79)
T ss_pred             ceEEEeeCCcCCCCCceEEEeCCEEEECCCChhhCEEEEEEEeCCCC
Confidence            3699999655 7654333  577899999999999999999987654

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=97.60  E-value=9.9e-05  Score=62.47  Aligned_cols=44  Identities=36%  Similarity=0.780  Sum_probs=36.0

Q ss_pred             CcEEEEecCC-CCCccc--cCCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRY--AEGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~--~~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.++ ++....  ..++.|+|.+|+.+|+|.|.|.+.|..|
T Consensus        31 p~v~W~k~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G   77 (88)
T cd04968          31 PQIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEGTYECEAENIKG   77 (88)
T ss_pred             CEEEEEECCCcCCCccEEEEeCCEEEECCCCcccCEEEEEEEEECCC
Confidence            4799999777 544332  2678999999999999999999988776

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=97.59  E-value=7.2e-05  Score=61.64  Aligned_cols=44  Identities=27%  Similarity=0.472  Sum_probs=36.1

Q ss_pred             CcEEEEecCC-CCCcccc----C--CCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA----E--GNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~----~--~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.++ ++...+.    .  .+.|+|.+|+.+|+|.|.|.+.|..+
T Consensus        16 p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G   66 (78)
T cd05743          16 PIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRG   66 (78)
T ss_pred             CEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCC
Confidence            5799999777 8765432    2  35899999999999999999998876

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=97.59  E-value=0.00011  Score=59.93  Aligned_cols=44  Identities=20%  Similarity=0.352  Sum_probs=33.9

Q ss_pred             CcEEEEecCC-CCC-cccc----C-CC--eEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPL-QRYA----E-GN--VLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~-~~~~----~-~~--~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|.|.|.+. |.. ..+.    . ++  .|+|.+++.+|+|.|.|.+.|.-|
T Consensus        13 P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G   65 (75)
T cd05892          13 PKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAG   65 (75)
T ss_pred             CeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcC
Confidence            5899999665 653 2222    2 22  799999999999999999998765

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins

Probab=97.57  E-value=4.5e-05  Score=54.00  Aligned_cols=31  Identities=29%  Similarity=0.797  Sum_probs=27.3

Q ss_pred             CCCCccC--CCCC-CCeeecCCCCeEEeCCCCcc
Q psy9228         177 LGEPCYP--GACG-DGSCQDVDGAMKCLCPIGTA  207 (834)
Q Consensus       177 ~~~~C~~--~~C~-~g~C~~~~~~~~C~C~~g~~  207 (834)
                      |+|||..  ++|. ++.|+|..++|+|.|++||.
T Consensus         1 DidEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~   34 (42)
T PF07645_consen    1 DIDECAEGPHNCPENGTCVNTEGSYSCSCPPGYE   34 (42)
T ss_dssp             ESSTTTTTSSSSSTTSEEEEETTEEEEEESTTEE
T ss_pred             CccccCCCCCcCCCCCEEEcCCCCEEeeCCCCcE
Confidence            5789987  4697 58999999999999999997

Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=97.56  E-value=6e-05  Score=63.02  Aligned_cols=43  Identities=26%  Similarity=0.353  Sum_probs=34.5

Q ss_pred             CcEEEEecCC-CCCc-c--ccCCCeEEEcccCCCCCeeEEEEEcCCC
Q psy9228           2 AYIKWSRADG-LPLQ-R--YAEGNVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~-~--~~~~~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      ++|+|.|.+. |+.. .  .+.++.|.|.||+.+|+|.|.|.+.+..
T Consensus        25 ~~i~W~~ng~~i~~~~~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873          25 ARVVWKFDGKVLTPESAKYLLYRDGLLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             CeEEEEECCEECCCCCceEEEECCcEEEeCCCHHHCEEEEEEEEecc
Confidence            5799999665 7654 1  2257789999999999999999998663

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity

Probab=97.55  E-value=0.0036  Score=62.11  Aligned_cols=148  Identities=16%  Similarity=0.128  Sum_probs=88.3

Q ss_pred             cccccccCCcc-ccceeEEEEEEEeeCC--CCeeEE-EeccCCccccCCCCCeEEEEEECcEEEEEEecccEEEEeeeee
Q psy9228         391 PLSYLALPTLT-DAHLHFSIELSFKPTD--YNGLIM-YTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVGLVVLRSKVTL  466 (834)
Q Consensus       391 ~~s~l~~~~~~-~~~~~~~i~~~frt~~--~~GlLl-~~~~~~~~~~~~~~d~~~l~L~~G~l~~~~~~G~~~i~s~~~~  466 (834)
                      ...|+.++... .....|++.+++|+..  ..+.|| |....      ....++...-.+|++.+.+.-..  .......
T Consensus        16 ~~~yv~l~~~~~~~l~~fTv~~Wv~~~~~~~~~~ifSy~~~~------~~~~~~l~~~~~g~~~~~i~~~~--~~~~~~~   87 (201)
T cd00152          16 DTSYVKLKPELPKPLQAFTLCLWVYTDLSTREYSLFSYATKG------QDNELLLYKEKDGGYSLYIGGKE--VTFKVPE   87 (201)
T ss_pred             CCceEEEccCCCCChhhEEEEEEEEecCCCCCeEEEEEeCCC------CCCeEEEEEcCCCeEEEEEcCEE--EEEeccC
Confidence            34677775433 3557799999999875  445555 33321      12233333224466666553222  2223455


Q ss_pred             cCCCeEEEEEEEECC--eEEEEECCeeeeeeecCCCccccccCCCceeeccccCCCcccCcCcccccCceeEEeeeEEcC
Q psy9228         467 VPHEWVVVTIIKDFK--EGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLG  544 (834)
Q Consensus       467 ~dg~wH~V~v~~~~~--~~~l~VD~~~~~~~~~~g~~~~~l~~~~~l~iGG~~~~~~~~~~~~~~~~gF~GCi~~v~ing  544 (834)
                      .+|+||+|.++++..  .++|+|||....... ... ...+...+.+.||-.....   .........|.|-|.++.+-.
T Consensus        88 ~~g~W~hv~~t~d~~~g~~~lyvnG~~~~~~~-~~~-~~~~~~~g~l~lG~~q~~~---gg~~~~~~~f~G~I~~v~iw~  162 (201)
T cd00152          88 SDGAWHHICVTWESTSGIAELWVNGKLSVRKS-LKK-GYTVGPGGSIILGQEQDSY---GGGFDATQSFVGEISDVNMWD  162 (201)
T ss_pred             CCCCEEEEEEEEECCCCcEEEEECCEEecccc-ccC-CCEECCCCeEEEeecccCC---CCCCCCCcceEEEEceeEEEc
Confidence            999999999999854  678999998765433 111 2344556678887543321   111223467999999999977


Q ss_pred             eeeeecc
Q psy9228         545 SELDLIN  551 (834)
Q Consensus       545 ~~~~~~~  551 (834)
                      +.+...+
T Consensus       163 ~~Ls~~e  169 (201)
T cd00152         163 SVLSPEE  169 (201)
T ss_pred             ccCCHHH
Confidence            6655443

CRP binds to ligands containing phosphocholine, SAP binds to amyloid fibrils, DNA, chromatin, fibronectin, C4-binding proteins and glycosaminoglycans. "Long" pentraxins have N-terminal extensions to the common pentraxin domain; one group, the neuronal pentraxins, may be involved in synapse formation and remodeling, and they may also be able to form heteromultimers.

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=97.53  E-value=0.00013  Score=59.43  Aligned_cols=44  Identities=20%  Similarity=0.473  Sum_probs=36.0

Q ss_pred             CcEEEEecCC--CCCcccc---CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG--LPLQRYA---EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~--~~~~~~~---~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++++|.|.++  ++...+.   .++.|+|.+++.+|+|.|+|.+.|..+
T Consensus        16 p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G   64 (74)
T cd05764          16 PAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAG   64 (74)
T ss_pred             CEEEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCEEEEEEEECCCC
Confidence            4899998677  5554332   578999999999999999999998875

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=97.52  E-value=0.00013  Score=61.96  Aligned_cols=44  Identities=30%  Similarity=0.565  Sum_probs=36.0

Q ss_pred             CcEEEEecCC-CCCcccc---CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA---EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~---~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ..|.|.|.+. |...+..   .+..|+|.+|+.+|+|.|.|.+.|..|
T Consensus        32 p~i~W~kng~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G   79 (91)
T cd05740          32 TYIWWVNNGSLLVPPRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVS   79 (91)
T ss_pred             CEEEEEECCEECCCCCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCC
Confidence            5799999666 6655432   457999999999999999999998875

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family

Probab=97.51  E-value=0.0039  Score=62.05  Aligned_cols=148  Identities=15%  Similarity=0.127  Sum_probs=87.2

Q ss_pred             ccccccCCcc-ccceeEEEEEEEeeCC--CCeeEEEeccCCccccCCCCCeEEEEEECcEEEEEEecccEEEEeeeeecC
Q psy9228         392 LSYLALPTLT-DAHLHFSIELSFKPTD--YNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVGLVVLRSKVTLVP  468 (834)
Q Consensus       392 ~s~l~~~~~~-~~~~~~~i~~~frt~~--~~GlLl~~~~~~~~~~~~~~d~~~l~L~~G~l~~~~~~G~~~i~s~~~~~d  468 (834)
                      ..|+.++... ..-..+++.+++|+..  .++.||-.....     ....++...-.++.+.+.+  +...+..+..+.+
T Consensus        17 ~~yv~l~~~~~~~l~~fTvc~W~k~~~~~~~~~ifSy~~~~-----~~ne~~~~~~~~~~~~l~i--~g~~~~~~~~~~~   89 (206)
T smart00159       17 TSYVKLKPELPKPLQAFTVCLWFYSDLSPRGYSLFSYATKG-----QDNELLLYKEKQGEYSLYI--GGKKVQFPVPESD   89 (206)
T ss_pred             CCeEEEccCCCCChhHEEEEEEEEecCCCCceEEEEEeCCC-----CCCeEEEEEcCCcEEEEEE--cCeEEEecccccC
Confidence            4677765432 2456799999999975  455555332211     1223332222444444444  3234455567899


Q ss_pred             CCeEEEEEEEECC--eEEEEECCeeeeeeecCCCccccccCCCceeeccccCCCcccCcCcccccCceeEEeeeEEcCee
Q psy9228         469 HEWVVVTIIKDFK--EGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSE  546 (834)
Q Consensus       469 g~wH~V~v~~~~~--~~~l~VD~~~~~~~~~~g~~~~~l~~~~~l~iGG~~~~~~~~~~~~~~~~gF~GCi~~v~ing~~  546 (834)
                      |+||+|.++++..  .++|+|||..... ..... ...+...+.+.||-..+.   ..........|.|-|.++.|=.+.
T Consensus        90 g~W~hvc~tw~~~~g~~~lyvnG~~~~~-~~~~~-g~~i~~~G~lvlGq~qd~---~gg~f~~~~~f~G~i~~v~iw~~~  164 (206)
T smart00159       90 GKWHHICTTWESSSGIAELWVDGKPGVR-KGLAK-GYTVKPGGSIILGQEQDS---YGGGFDATQSFVGEIGDLNMWDSV  164 (206)
T ss_pred             CceEEEEEEEECCCCcEEEEECCEEccc-ccccC-CcEECCCCEEEEEecccC---CCCCCCCCcceeEEEeeeEEeccc
Confidence            9999999999854  6789999987521 11111 123445666777764331   111223356799999999997766


Q ss_pred             eeecc
Q psy9228         547 LDLIN  551 (834)
Q Consensus       547 ~~~~~  551 (834)
                      +...+
T Consensus       165 Ls~~e  169 (206)
T smart00159      165 LSPEE  169 (206)
T ss_pred             CCHHH
Confidence            65544

This family form a doscoid pentameric structure. Human serum amyloid P demonstrates calcium-mediated ligand-binding.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=97.51  E-value=0.00013  Score=59.78  Aligned_cols=44  Identities=16%  Similarity=0.418  Sum_probs=35.1

Q ss_pred             CcEEEEecCC-CCCc-----cccCCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQ-----RYAEGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~-----~~~~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.+. |...     +..+++.|.|.+|+.+|+|.|.|.++|..|
T Consensus        16 P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G   65 (76)
T cd05868          16 PSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYG   65 (76)
T ss_pred             CeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCC
Confidence            5899999555 6432     123567999999999999999999998876

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=97.51  E-value=0.00014  Score=61.04  Aligned_cols=44  Identities=30%  Similarity=0.551  Sum_probs=37.9

Q ss_pred             CcEEEEecCC-CCCccccCCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYAEGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .+|.|.|.+. +|......++.|.|.+|+.+|+|.|.|.+.|..+
T Consensus        32 ~~i~W~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g   76 (85)
T cd05754          32 YTLVWTRVGGGLPSRAMDFNGILTIRNVQLSDAGTYVCTGSNMLD   76 (85)
T ss_pred             cEEEEEECCCcCCCcccccCCEEEECCCCHHHCEEEEEEEeccCC
Confidence            3799999777 8876666688999999999999999999987764

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=97.50  E-value=0.0002  Score=58.37  Aligned_cols=44  Identities=27%  Similarity=0.507  Sum_probs=35.1

Q ss_pred             CcEEEEecCC-CCCcccc---------CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA---------EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~---------~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++++|.|.+. |+.....         ....|+|.+++.+|+|.|.|.++|..+
T Consensus        14 p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G   67 (75)
T cd05750          14 LRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILG   67 (75)
T ss_pred             ceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCC
Confidence            5899999665 7654321         246899999999999999999998875

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=97.48  E-value=0.00015  Score=61.64  Aligned_cols=44  Identities=25%  Similarity=0.471  Sum_probs=36.1

Q ss_pred             CcEEEEecCC-CCCcccc--CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA--EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~--~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|.|.|.+. |+.....  .++.|.|.+|+.+|+|.|.|.+.+..+
T Consensus        30 p~i~Wyk~~~~i~~~~~~~~~~~~L~I~~v~~~DsG~YtC~~~n~~~   76 (92)
T cd05757          30 PPVQWYKDCKLLEGDRKRFVKGSKLLIQNVTEEDAGNYTCKLTFTHN   76 (92)
T ss_pred             CcEEEeECCEECCCCccEEecCCEEEEeeCChhhCEEEEEEEEecCC
Confidence            4899999666 7654443  678999999999999999999987643

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=97.47  E-value=0.00014  Score=62.86  Aligned_cols=44  Identities=16%  Similarity=0.250  Sum_probs=36.3

Q ss_pred             CcEEEEecCC-CCCcccc------CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA------EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~------~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .+|.|.|++. |..+.+.      ....|.|.+++.+|+|.|+|.+.|..|
T Consensus        30 p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G   80 (98)
T cd05762          30 ITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLG   80 (98)
T ss_pred             CceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCC
Confidence            5899999666 8654333      257899999999999999999999887

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=97.47  E-value=0.00011  Score=61.23  Aligned_cols=43  Identities=26%  Similarity=0.488  Sum_probs=33.5

Q ss_pred             CcEEEEecCC-CCCc----cc------cCCCeEEEcccCCCCCeeEEEEEcCCC
Q psy9228           2 AYIKWSRADG-LPLQ----RY------AEGNVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~----~~------~~~~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      .+|.|.|.+. |...    +.      ..++.|+|.||+.+|+|.|+|.+++.-
T Consensus        17 ~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~   70 (85)
T cd05853          17 IVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSV   70 (85)
T ss_pred             cEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEccc
Confidence            5799999666 7621    21      134689999999999999999998764

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=97.43  E-value=0.00028  Score=58.28  Aligned_cols=44  Identities=25%  Similarity=0.448  Sum_probs=34.4

Q ss_pred             CcEEEEecCC--CCC-------ccc---cCCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG--LPL-------QRY---AEGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~--~~~-------~~~---~~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.++  .|.       ..+   ..++.|.|.+++.+|+|.|.|.+.|..|
T Consensus        13 P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G   68 (79)
T cd05734          13 PTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVG   68 (79)
T ss_pred             CEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCC
Confidence            5899999765  332       111   1468999999999999999999998865

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=97.42  E-value=0.00024  Score=60.76  Aligned_cols=44  Identities=27%  Similarity=0.599  Sum_probs=34.9

Q ss_pred             CcEEEEecCC-CCCc----ccc--CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQ----RYA--EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~----~~~--~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .+|.|.|.+. ++..    .+.  .++.|.|.+++.+|+|.|.|.+.|..+
T Consensus        34 ~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g   84 (94)
T cd05756          34 LNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTY   84 (94)
T ss_pred             ceEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcCCCc
Confidence            4799999776 5432    222  478999999999999999999988765

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=97.41  E-value=0.00014  Score=62.99  Aligned_cols=44  Identities=18%  Similarity=0.338  Sum_probs=35.1

Q ss_pred             CcEEEEecCC-CCCcccc----C-------CCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA----E-------GNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~----~-------~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|++. |+.+...    .       ...|.|.+|+.+|+|.|+|.++|..+
T Consensus        34 p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G   89 (101)
T cd04975          34 PHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDA   89 (101)
T ss_pred             CccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCc
Confidence            4799999555 8754332    1       36799999999999999999998876

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=97.38  E-value=0.00027  Score=57.81  Aligned_cols=44  Identities=18%  Similarity=0.386  Sum_probs=35.2

Q ss_pred             CcEEEEecCC-CCCcc-----ccCCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQR-----YAEGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~-----~~~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.+. |....     ...++.|.|.+|+.+|+|.|.|.+.|..+
T Consensus        16 p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G   65 (76)
T cd04978          16 PTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHG   65 (76)
T ss_pred             CEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCC
Confidence            4799999655 54432     22578999999999999999999988765

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=97.36  E-value=0.00036  Score=56.93  Aligned_cols=44  Identities=23%  Similarity=0.382  Sum_probs=33.9

Q ss_pred             CcEEEEecCC-CCCc-ccc----CC-C--eEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQ-RYA----EG-N--VLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~-~~~----~~-~--~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|.|.|.+. |+.. .+.    .+ +  .|.|.+++.+|+|.|.|.+.|..|
T Consensus        13 P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G   65 (75)
T cd05744          13 PQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAG   65 (75)
T ss_pred             CeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCC
Confidence            4799999666 7642 222    21 2  699999999999999999998876

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=97.36  E-value=0.00024  Score=60.38  Aligned_cols=43  Identities=30%  Similarity=0.618  Sum_probs=33.1

Q ss_pred             cEEEEecCC--C-CCcccc--CCC---eEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           3 YIKWSRADG--L-PLQRYA--EGN---VLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         3 ~~~w~~~~~--~-~~~~~~--~~~---~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .++|.|.++  + +..+..  .++   .|+|.+|+.+|+|.|.|.++|..|
T Consensus        30 ~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G   80 (92)
T cd05866          30 SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKG   80 (92)
T ss_pred             eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCC
Confidence            789998666  3 333322  233   899999999999999999998865

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=97.36  E-value=0.00022  Score=59.83  Aligned_cols=44  Identities=30%  Similarity=0.527  Sum_probs=36.7

Q ss_pred             CcEEEEecCC-CCCcccc--CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA--EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~--~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      +++.|.|.+. |+...+.  .++.|.|.+++.+|+|.|.|.+.|..+
T Consensus        29 p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G   75 (85)
T cd05728          29 PAYRWLKNGQPLASENRIEVEAGDLRITKLSLSDSGMYQCVAENKHG   75 (85)
T ss_pred             CEEEEEECCEECCCCCeEEEeCCEEEEeeCCHHHCEEEEEEEECCCC
Confidence            4799999766 7654333  678999999999999999999998766

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>smart00181 EGF Epidermal growth factor-like domain

Probab=97.35  E-value=0.00026  Score=47.96  Aligned_cols=30  Identities=43%  Similarity=1.153  Sum_probs=24.7

Q ss_pred             C-CCCCCCCEeccCCCCCceEeeCCCCCCC-CCCC
Q psy9228         143 H-NNCINNGLCQDAATRIGYTCICPPGFSG-DRCS  175 (834)
Q Consensus       143 ~-~pC~n~g~C~~~~~~~~~~C~C~~g~~G-~~Ce  175 (834)
                      . +||.++ +|++..  ++|+|.|++||.| ..|+
T Consensus         4 ~~~~C~~~-~C~~~~--~~~~C~C~~g~~g~~~C~   35 (35)
T smart00181        4 SGGPCSNG-TCINTP--GSYTCSCPPGYTGDKRCE   35 (35)
T ss_pred             CcCCCCCC-EEECCC--CCeEeECCCCCccCCccC
Confidence            5 689988 999875  8899999999998 7764

>smart00560 LamGL LamG-like jellyroll fold domain

Probab=97.34  E-value=0.0065  Score=55.85  Aligned_cols=66  Identities=24%  Similarity=0.228  Sum_probs=47.6

Q ss_pred             CCcEEEEEEEEC--CEEEEEEcCeeeecccCCCCccceecCCceEEcC-cCCCCCCCCCccCCCceEEEEEEEECCce
Q psy9228         740 GIKHSVNVTRIN--KFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGG-TPNMDLMTGGRYVHPMSGLMMNIHIQNKH  814 (834)
Q Consensus       740 g~wH~V~i~r~~--~~~~l~VD~~~~~~~~~~~~~~~l~~~~~lyiGG-~p~~~~~~~~~~~~~F~GCi~~v~in~~~  814 (834)
                      |+||||.++.++  ++++|+|||..+......    .....+++.||. ...     .......|.|.|.+|+|-+..
T Consensus        61 ~~W~hva~v~d~~~g~~~lYvnG~~~~~~~~~----~~~~~~~~~iG~~~~~-----~~~~~~~f~G~Idevriy~~a  129 (133)
T smart00560       61 GVWVHLAGVYDGGAGKLSLYVNGVEVATSETQ----PSPSSGNLPQGGRILL-----GGAGGENFSGRLDEVRVYNRA  129 (133)
T ss_pred             CCEEEEEEEEECCCCeEEEEECCEEccccccC----CcccCCceEEeeeccC-----CCCCCCCceEEeeEEEEeccc
Confidence            899999999998  799999999876543221    123456888884 211     112456899999999997763

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=97.34  E-value=0.00028  Score=59.97  Aligned_cols=44  Identities=25%  Similarity=0.420  Sum_probs=33.6

Q ss_pred             CcEEEEecCC-CC---------Ccccc--CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LP---------LQRYA--EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~---------~~~~~--~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .+|.|.|.++ +.         ..+..  .++.|+|.+|+.+|+|.|.|.+.|..|
T Consensus        16 p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G   71 (90)
T cd05726          16 PAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAG   71 (90)
T ss_pred             CEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCC
Confidence            4799999765 31         11111  367899999999999999999998765

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>KOG3513|consensus

Probab=97.34  E-value=0.00049  Score=80.97  Aligned_cols=44  Identities=39%  Similarity=0.764  Sum_probs=36.9

Q ss_pred             CcEEEEecCCCCCcccc----CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADGLPLQRYA----EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~~~~~~~~----~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .+|.|+|.||.|..+++    .+.+|+|+||+.+|+|.|+|.++|..|
T Consensus       271 P~i~W~k~~g~~~~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G  318 (1051)
T KOG3513|consen  271 PQIKWRKVDGKPPPRRATYSNYGKVLKIPNVQYEDAGEYECIAENSRG  318 (1051)
T ss_pred             CcEEEEeCCCCCCCcceeeeccccEEEecccCcCCCeEEEEEEecccc
Confidence            37999999993333333    588999999999999999999999987

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=97.33  E-value=0.00046  Score=56.62  Aligned_cols=44  Identities=18%  Similarity=0.377  Sum_probs=33.8

Q ss_pred             CcEEEEecCC-CCCcc--cc----CCCeEEEcccCC----CCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQR--YA----EGNVLRITNARL----QDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~--~~----~~~~l~~~~~~~----~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|++. |+...  +.    .++.|.|.+++.    +|+|.|.|.+.|..|
T Consensus        13 P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G   67 (77)
T cd05733          13 PTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELG   67 (77)
T ss_pred             CeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCC
Confidence            4899999655 65421  11    468999999864    799999999998876

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=97.32  E-value=0.00035  Score=55.91  Aligned_cols=42  Identities=29%  Similarity=0.506  Sum_probs=33.2

Q ss_pred             CcEEEEecCC-CCCcccc--CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA--EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~--~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.+. |+...+.  .+..|+|.+++  |+|.|+|.+.|..+
T Consensus        16 P~v~W~k~g~~l~~~~~~~~~~~~L~i~~~~--d~G~Y~C~A~N~~G   60 (69)
T cd05739          16 PYVKWMKGGEELTKEDEMPVGRNVLELTNIY--ESANYTCVAISSLG   60 (69)
T ss_pred             CEEEEEECCEECCCccceecCccEEEEeccc--cCeeEEEEEEeCCC
Confidence            4899999776 7665443  45689999974  89999999998765

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=97.29  E-value=0.00025  Score=61.50  Aligned_cols=44  Identities=25%  Similarity=0.366  Sum_probs=35.6

Q ss_pred             CcEEEEecCC-CCCcccc------------CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA------------EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~------------~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|++. |+...+.            ....|+|.+++.+|+|.|+|.++|..+
T Consensus        33 P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g   89 (101)
T cd05859          33 PQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDA   89 (101)
T ss_pred             CceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCc
Confidence            4899999666 8765432            135899999999999999999998876

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium

Probab=97.27  E-value=0.00036  Score=47.41  Aligned_cols=33  Identities=52%  Similarity=1.219  Sum_probs=28.8

Q ss_pred             CC-CCCCCCCCeecccCCCCCceeeecCCCCCCC-CCc
Q psy9228         571 CA-PKPCQNYGICYPTDTSERGYNCSCLTGYSGD-HCE  606 (834)
Q Consensus       571 C~-~~pC~ngg~C~~~~~~~~~~~C~C~~G~~G~-~Ce  606 (834)
                      |. ..+|.+++.|++...   .|+|.|+.||.|. .|+
T Consensus         2 C~~~~~C~~~~~C~~~~~---~~~C~C~~g~~g~~~C~   36 (36)
T cd00053           2 CAASNPCSNGGTCVNTPG---SYRCVCPPGYTGDRSCE   36 (36)
T ss_pred             CCCCCCCCCCCEEecCCC---CeEeECCCCCcccCCcC
Confidence            55 789999999999987   8999999999998 663

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=97.26  E-value=0.00045  Score=58.07  Aligned_cols=44  Identities=27%  Similarity=0.494  Sum_probs=34.8

Q ss_pred             CcEEEEecCC-CCC-cccc---CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPL-QRYA---EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~-~~~~---~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .+|.|.|.+. +.. ..+.   .++.|.|.+++.+|+|.|.|.+.|..|
T Consensus        27 p~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G   75 (86)
T cd05724          27 PTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVG   75 (86)
T ss_pred             CEEEEEECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccC
Confidence            4799999655 554 2222   468999999999999999999998765

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=97.26  E-value=0.00052  Score=56.14  Aligned_cols=44  Identities=25%  Similarity=0.508  Sum_probs=33.9

Q ss_pred             CcEEEEecCC-CCCcccc----------CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA----------EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~----------~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .+++|.|.+. |+.....          ....|.|.+++.+|+|.|.|.++|..+
T Consensus        14 ~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g   68 (76)
T cd05895          14 LRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLG   68 (76)
T ss_pred             CceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCC
Confidence            4799999655 7542111          246799999999999999999998765

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>smart00181 EGF Epidermal growth factor-like domain

Probab=97.24  E-value=0.00039  Score=47.08  Aligned_cols=33  Identities=48%  Similarity=1.118  Sum_probs=28.3

Q ss_pred             CCCC-CCCCCCCeecccCCCCCceeeecCCCCCC-CCCc
Q psy9228         570 VCAP-KPCQNYGICYPTDTSERGYNCSCLTGYSG-DHCE  606 (834)
Q Consensus       570 ~C~~-~pC~ngg~C~~~~~~~~~~~C~C~~G~~G-~~Ce  606 (834)
                      +|.. .||.++ .|++..+   +|+|.|++||.| +.|+
T Consensus         1 ~C~~~~~C~~~-~C~~~~~---~~~C~C~~g~~g~~~C~   35 (35)
T smart00181        1 ECASGGPCSNG-TCINTPG---SYTCSCPPGYTGDKRCE   35 (35)
T ss_pred             CCCCcCCCCCC-EEECCCC---CeEeECCCCCccCCccC
Confidence            3666 699999 9999976   999999999999 7774

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=97.24  E-value=0.00042  Score=57.56  Aligned_cols=44  Identities=25%  Similarity=0.516  Sum_probs=34.6

Q ss_pred             CcEEEEecCC-CCCcccc----CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA----EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~----~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      +++.|.|.+. ++.....    .+..|.|.+++.+|+|.|.|.+.|..+
T Consensus        24 p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G   72 (82)
T cd05856          24 PDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAG   72 (82)
T ss_pred             CcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCc
Confidence            4799999766 6443222    246899999999999999999988776

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins

Probab=97.23  E-value=0.00018  Score=50.93  Aligned_cols=33  Identities=36%  Similarity=0.892  Sum_probs=28.5

Q ss_pred             CccCCCCC-CccCCCceeeecCCCcEEcCCCCCC
Q psy9228         608 ENNMCMKG-DVCKNGGMCKVTPDSYECLCSLGYA  640 (834)
Q Consensus       608 ~~~~C~~~-~pC~ngg~C~~~~~~~~C~C~~g~~  640 (834)
                      ++|||... ++|..++.|++..++|+|.|++||.
T Consensus         1 DidEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~   34 (42)
T PF07645_consen    1 DIDECAEGPHNCPENGTCVNTEGSYSCSCPPGYE   34 (42)
T ss_dssp             ESSTTTTTSSSSSTTSEEEEETTEEEEEESTTEE
T ss_pred             CccccCCCCCcCCCCCEEEcCCCCEEeeCCCCcE
Confidence            36788764 3799999999999999999999987

Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=97.22  E-value=0.00051  Score=58.64  Aligned_cols=44  Identities=30%  Similarity=0.597  Sum_probs=34.5

Q ss_pred             CcEEEEecCC-CCC-c-cc-cCCCeEEEcccC-CCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPL-Q-RY-AEGNVLRITNAR-LQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~-~-~~-~~~~~l~~~~~~-~~d~g~y~c~~~~~~~   45 (834)
                      .+|+|.|.+. |.. . +. ..++.|.|.++. .+|+|.|.|.++|..|
T Consensus        34 P~i~W~k~~~~i~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G   82 (93)
T cd05849          34 PIYKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIVSNIYG   82 (93)
T ss_pred             CEEEEEECCEEccCCCCeEEEECCEEEECcCCcCCCCEEEEEEEEeCcc
Confidence            4899999776 642 2 22 257899999985 6999999999998876

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=97.22  E-value=0.0004  Score=59.64  Aligned_cols=43  Identities=35%  Similarity=0.641  Sum_probs=32.9

Q ss_pred             CcEEEEecCC--CCC-cccc----C---CCeEEEcccCCCCCeeEEEEEcCCC
Q psy9228           2 AYIKWSRADG--LPL-QRYA----E---GNVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus         2 ~~~~w~~~~~--~~~-~~~~----~---~~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      .+|+|.|.++  |.. .++.    .   .+.|+|.+|+.+|+|.|+|.++|..
T Consensus        31 p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~   83 (96)
T cd05865          31 KDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNED   83 (96)
T ss_pred             CEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCC
Confidence            4899998555  443 3222    1   2589999999999999999999875

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=97.20  E-value=0.00055  Score=58.40  Aligned_cols=44  Identities=32%  Similarity=0.573  Sum_probs=32.8

Q ss_pred             CcEEEEecCC--CCC-cccc--C----CCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG--LPL-QRYA--E----GNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~--~~~-~~~~--~----~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ..|.|.|.++  +.. .+..  .    ...|+|.+|+.+|+|.|+|.++|..+
T Consensus        29 ~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g   81 (92)
T cd04977          29 KDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKG   81 (92)
T ss_pred             CeEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCC
Confidence            4799998666  332 2221  1    24899999999999999999998754

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=97.20  E-value=0.00062  Score=58.10  Aligned_cols=44  Identities=30%  Similarity=0.496  Sum_probs=34.2

Q ss_pred             CcEEEEecCC-CCCccc--c--C-C--CeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRY--A--E-G--NVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~--~--~-~--~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|.|.|.+. |....+  +  . +  ..|.|.+++.+|+|.|.|.++|..|
T Consensus        31 p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G   82 (92)
T cd05737          31 PEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYG   82 (92)
T ss_pred             CeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCC
Confidence            4799999766 654322  2  2 2  3799999999999999999998776

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=97.19  E-value=0.00038  Score=58.39  Aligned_cols=43  Identities=28%  Similarity=0.463  Sum_probs=33.1

Q ss_pred             cEEEEecCC-CCCcc-------c---cCCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           3 YIKWSRADG-LPLQR-------Y---AEGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         3 ~~~w~~~~~-~~~~~-------~---~~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++.|.|.+. |....       .   ..++.|+|.+|+.+|+|.|+|.+.|.-+
T Consensus        18 ~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g   71 (85)
T cd04970          18 TFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVD   71 (85)
T ss_pred             EEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCC
Confidence            679999555 65421       1   1467899999999999999999987654

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=97.19  E-value=0.0005  Score=57.78  Aligned_cols=44  Identities=20%  Similarity=0.352  Sum_probs=34.6

Q ss_pred             CcEEEEecCC-CCC-cccc------CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPL-QRYA------EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~-~~~~------~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.+. |.. ..+.      ....|.|.+++.+|+|.|.|.+.|..|
T Consensus        25 P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G   76 (86)
T cd05894          25 PTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVG   76 (86)
T ss_pred             CeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCC
Confidence            5899999666 643 2122      236899999999999999999998877

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=97.19  E-value=0.00056  Score=58.79  Aligned_cols=44  Identities=14%  Similarity=0.387  Sum_probs=35.3

Q ss_pred             CcEEEEecCC-CCCc-ccc----CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQ-RYA----EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~-~~~----~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|.|.|.+. |+.. .+.    .+..|+|.+|+.+|+|.|.|.+.|..|
T Consensus        33 p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G   82 (95)
T cd05730          33 PTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAG   82 (95)
T ss_pred             CEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCC
Confidence            5799999665 7654 221    356899999999999999999998876

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=97.18  E-value=0.00044  Score=57.97  Aligned_cols=43  Identities=30%  Similarity=0.420  Sum_probs=33.2

Q ss_pred             cEEEEecCC-CCCcc---c---c----CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           3 YIKWSRADG-LPLQR---Y---A----EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         3 ~~~w~~~~~-~~~~~---~---~----~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      +|+|.|.+. |+...   +   .    ..+.|.|.+|+.+|+|.|+|.++|.-+
T Consensus        18 ~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g   71 (85)
T cd05854          18 TFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVD   71 (85)
T ss_pred             EEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCC
Confidence            689999555 65421   1   1    246899999999999999999988754

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=97.15  E-value=0.00079  Score=57.66  Aligned_cols=44  Identities=23%  Similarity=0.419  Sum_probs=34.3

Q ss_pred             CcEEEEecCC-CCCcc----ccCCCeEEEcccC-CCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQR----YAEGNVLRITNAR-LQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~----~~~~~~l~~~~~~-~~d~g~y~c~~~~~~~   45 (834)
                      .+|+|.|.+. |....    ...++.|.|.++. .+|+|.|.|.++|..|
T Consensus        34 P~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~~G   83 (94)
T cd05848          34 PTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNSIG   83 (94)
T ss_pred             CEEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcCCC
Confidence            4899999665 75422    1257899999985 6999999999998865

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=97.14  E-value=0.00071  Score=56.70  Aligned_cols=44  Identities=14%  Similarity=0.351  Sum_probs=34.9

Q ss_pred             CcEEEEecCC-CCCcccc-------CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA-------EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~-------~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.+. |....+.       ....|.|.+++.+|+|.|.|.+.|..|
T Consensus        24 p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G   75 (85)
T cd05857          24 PTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYG   75 (85)
T ss_pred             CEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCC
Confidence            4799999666 6554322       345799999999999999999998876

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>KOG4260|consensus

Probab=97.14  E-value=0.00044  Score=67.42  Aligned_cols=81  Identities=26%  Similarity=0.660  Sum_probs=60.6

Q ss_pred             CCCCccCCCCCCCCCCCCEec-cCCCCCceEeeCCCCCCCCCCCC-----------------------------------
Q psy9228         133 DSCNTCKSSKHNNCINNGLCQ-DAATRIGYTCICPPGFSGDRCSV-----------------------------------  176 (834)
Q Consensus       133 ~~c~~C~~~~~~pC~n~g~C~-~~~~~~~~~C~C~~g~~G~~Ce~-----------------------------------  176 (834)
                      ++|-.|.--...||..+|.|. +....++-.|.|-+||+|+.|..                                   
T Consensus       139 pdCl~Cpggser~C~GnG~C~GdGsR~GsGkCkC~~GY~Gp~C~~Cg~eyfes~Rne~~lvCt~Ch~~C~~~Csg~~~k~  218 (350)
T KOG4260|consen  139 PDCLQCPGGSERPCFGNGSCHGDGSREGSGKCKCETGYTGPLCRYCGIEYFESSRNEQHLVCTACHEGCLGVCSGESSKG  218 (350)
T ss_pred             CccccCCCCCcCCcCCCCcccCCCCCCCCCcccccCCCCCccccccchHHHHhhcccccchhhhhhhhhhcccCCCCCCC
Confidence            567777211157899999998 33334567999999999988742                                   


Q ss_pred             ----------------CCCCcc--CCCCCC-CeeecCCCCeEEeCCCCcccC--cccc
Q psy9228         177 ----------------LGEPCY--PGACGD-GSCQDVDGAMKCLCPIGTAGK--RCEQ  213 (834)
Q Consensus       177 ----------------~~~~C~--~~~C~~-g~C~~~~~~~~C~C~~g~~G~--~Ce~  213 (834)
                                      |+|+|.  +.||.. -.|+|..++|.|.+.+||.+.  .|+.
T Consensus       219 C~kCkkGW~lde~gCvDvnEC~~ep~~c~~~qfCvNteGSf~C~dk~Gy~~g~d~C~~  276 (350)
T KOG4260|consen  219 CSKCKKGWKLDEEGCVDVNECQNEPAPCKAHQFCVNTEGSFKCEDKEGYKKGVDECQF  276 (350)
T ss_pred             hhhhcccceecccccccHHHHhcCCCCCChhheeecCCCceEecccccccCChHHhhh
Confidence                            266675  477884 699999999999999998863  4544

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=97.14  E-value=0.00045  Score=58.74  Aligned_cols=44  Identities=25%  Similarity=0.465  Sum_probs=33.9

Q ss_pred             CCcEEEEecCC-CCCcccc-----CCCeEEEcccCCCCCeeEEEEEcCCC
Q psy9228           1 NAYIKWSRADG-LPLQRYA-----EGNVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus         1 ~~~~~w~~~~~-~~~~~~~-----~~~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      +++|+|.|++. |+.....     ....|.|.+|..+|+|.|.|.+++..
T Consensus        29 ~~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~   78 (95)
T cd05897          29 DVELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTH   78 (95)
T ss_pred             CCcEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEee
Confidence            35899999555 7643211     34689999999999999999998664

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=97.13  E-value=0.00077  Score=57.73  Aligned_cols=44  Identities=20%  Similarity=0.373  Sum_probs=33.9

Q ss_pred             CcEEEEecCC-CCCcc----ccCCCeEEEcccC-CCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQR----YAEGNVLRITNAR-LQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~----~~~~~~l~~~~~~-~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|+|.+. |+...    ...++.|.|.++. .+|+|.|.|.++|..|
T Consensus        34 p~i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G   83 (94)
T cd05850          34 ATYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAINRCG   83 (94)
T ss_pred             CEEEEEECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEEcCcC
Confidence            5899999665 75322    1257899998865 5999999999998765

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=97.11  E-value=0.001  Score=54.41  Aligned_cols=44  Identities=23%  Similarity=0.508  Sum_probs=34.0

Q ss_pred             CcEEEEecCC-CCCccc----c--CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRY----A--EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~----~--~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      +.|.|.|.+. |.....    .  .+..|.|.+++.+|+|.|.|.+.|..+
T Consensus        13 p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G   63 (76)
T cd05736          13 PRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAG   63 (76)
T ss_pred             CEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCC
Confidence            4799999666 543321    1  345799999999999999999998765

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium

Probab=97.10  E-value=0.00062  Score=46.21  Aligned_cols=29  Identities=48%  Similarity=1.175  Sum_probs=26.9

Q ss_pred             ccCCCceeeecCCCcEEcCCCCCCCC-Ccc
Q psy9228         617 VCKNGGMCKVTPDSYECLCSLGYAPP-NCA  645 (834)
Q Consensus       617 pC~ngg~C~~~~~~~~C~C~~g~~G~-~Ce  645 (834)
                      +|.+++.|++..++|.|.|+.||.|. .|+
T Consensus         7 ~C~~~~~C~~~~~~~~C~C~~g~~g~~~C~   36 (36)
T cd00053           7 PCSNGGTCVNTPGSYRCVCPPGYTGDRSCE   36 (36)
T ss_pred             CCCCCCEEecCCCCeEeECCCCCcccCCcC
Confidence            89999999999999999999999998 764

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=97.08  E-value=0.00043  Score=54.41  Aligned_cols=39  Identities=31%  Similarity=0.606  Sum_probs=30.6

Q ss_pred             CcEEEEecCC-CCCcccc----CCCe----EEEcccCCCCCeeEEEEE
Q psy9228           2 AYIKWSRADG-LPLQRYA----EGNV----LRITNARLQDSGKYKCEI   40 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~----~~~~----l~~~~~~~~d~g~y~c~~   40 (834)
                      ..+.|.|.+. ++.....    ....    |.|.+|+.+|+|.|.|.+
T Consensus        17 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen   17 TTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             SEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             cEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            4799999887 6665444    2222    999999999999999985

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=97.08  E-value=0.00087  Score=57.17  Aligned_cols=44  Identities=14%  Similarity=0.403  Sum_probs=34.5

Q ss_pred             CcEEEEecCC-CCCcccc------CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA------EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~------~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      +++.|.|.+. |....+.      ....|+|.+++.+|+|.|.|.++|..|
T Consensus        33 p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G   83 (92)
T cd05747          33 PTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSEG   83 (92)
T ss_pred             CEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCCC
Confidence            4799999766 6543222      235899999999999999999998876

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=97.07  E-value=0.0011  Score=54.38  Aligned_cols=44  Identities=16%  Similarity=0.325  Sum_probs=32.5

Q ss_pred             CcEEEEecCC-CCC--cccc----CCCeEEEcccCC----CCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPL--QRYA----EGNVLRITNARL----QDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~--~~~~----~~~~l~~~~~~~----~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.+. |+.  +.+.    .++.|.|.+++.    +|+|.|.|.++|..|
T Consensus        13 P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G   67 (77)
T cd05875          13 PTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLG   67 (77)
T ss_pred             CEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccc
Confidence            5899999665 642  2111    478999998753    479999999998876

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=97.03  E-value=0.001  Score=56.51  Aligned_cols=26  Identities=27%  Similarity=0.530  Sum_probs=23.6

Q ss_pred             CCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228          20 GNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus        20 ~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ...|.|.+|+.+|+|.|.|.+.|..|
T Consensus        54 ~~~L~I~~v~~~D~G~Y~C~A~N~~G   79 (90)
T cd04974          54 SEVLYLRNVSFDDAGEYTCLAGNSIG   79 (90)
T ss_pred             cceEEEeccccccCcEEEEEeecccC
Confidence            35899999999999999999998876

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=97.02  E-value=0.00075  Score=57.01  Aligned_cols=44  Identities=23%  Similarity=0.506  Sum_probs=33.9

Q ss_pred             CcEEEEecCC-CCCc--ccc-C-----C---CeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQ--RYA-E-----G---NVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~--~~~-~-----~---~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      +.|.|.|.+. |...  ++. .     .   ..|+|.+++.+|+|.|+|.+.|..|
T Consensus        16 ~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G   71 (88)
T cd05735          16 IIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYG   71 (88)
T ss_pred             CEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCC
Confidence            5799999665 6432  221 1     1   5799999999999999999999887

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=97.00  E-value=0.0014  Score=50.76  Aligned_cols=43  Identities=30%  Similarity=0.604  Sum_probs=33.6

Q ss_pred             CcEEEEecCC-CCCcccc--CCCeEEEcccCCCCCeeEEEEEcCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA--EGNVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~--~~~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      .++.|.|.+. ++.....  .+..|.|.+++.+|+|.|.|.+.+..
T Consensus        17 ~~v~W~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~   62 (63)
T smart00408       17 PNITWLKDGKPLPESNRLSASGSTLTIKSVSLEDSGEYTCVAENSA   62 (63)
T ss_pred             CeEEEEECCEECCCCCEEecCCcEEEEeeCCcccCEEEEEEEecCC
Confidence            4799999666 7732222  46799999999999999999997653

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=96.96  E-value=0.0013  Score=56.05  Aligned_cols=44  Identities=20%  Similarity=0.359  Sum_probs=33.5

Q ss_pred             CcEEEEecCC-CCCcc----ccCCCeEEEcccCC-CCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQR----YAEGNVLRITNARL-QDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~----~~~~~~l~~~~~~~-~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.+. |....    ...++.|.|.++.. +|+|.|.|.++|..|
T Consensus        34 p~i~W~k~~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G   83 (91)
T cd04967          34 PTYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLASNIVG   83 (91)
T ss_pred             CEEEEEECCEECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEEcCCC
Confidence            5899999555 63321    12468999999874 999999999998765

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=96.95  E-value=0.0011  Score=56.19  Aligned_cols=44  Identities=14%  Similarity=0.190  Sum_probs=35.2

Q ss_pred             CcEEEEecCC-CCCcccc------CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA------EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~------~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|.|.|.+. +...+..      ....|+|.+|+.+|.|.|.|.++|.-|
T Consensus        30 p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G   80 (90)
T cd04972          30 PKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVG   80 (90)
T ss_pred             CeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCC
Confidence            5899999666 6554331      345899999999999999999998876

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>KOG1226|consensus

Probab=96.93  E-value=0.0041  Score=70.19  Aligned_cols=71  Identities=28%  Similarity=0.779  Sum_probs=52.3

Q ss_pred             ccCCCCCCCCCCCCEeccCCCCCceEeeCCCCCCCCCCC--CCCCCccCC---CCC-CCeeecCCCCeEEeCCCC-cccC
Q psy9228         137 TCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCS--VLGEPCYPG---ACG-DGSCQDVDGAMKCLCPIG-TAGK  209 (834)
Q Consensus       137 ~C~~~~~~pC~n~g~C~~~~~~~~~~C~C~~g~~G~~Ce--~~~~~C~~~---~C~-~g~C~~~~~~~~C~C~~g-~~G~  209 (834)
                      .|.+....-|.++|.|.-.      .|.|.+||+|..|+  .+.+.|.+.   -|. .|+|.-.    +|.|... |.|.
T Consensus       548 sC~r~~g~lC~g~G~C~CG------~CvC~~GwtG~~C~C~~std~C~~~~G~iCSGrG~C~Cg----~C~C~~~~~sG~  617 (783)
T KOG1226|consen  548 SCERHKGVLCGGHGRCECG------RCVCNPGWTGSACNCPLSTDTCESSDGQICSGRGTCECG----RCKCTDPPYSGE  617 (783)
T ss_pred             ccccccCcccCCCCeEeCC------cEEcCCCCccCCCCCCCCCccccCCCCceeCCCceeeCC----ceEcCCCCcCcc
Confidence            4654445679999999864      69999999999885  456777652   354 3666643    6889766 9999


Q ss_pred             cccccccc
Q psy9228         210 RCEQKIKI  217 (834)
Q Consensus       210 ~Ce~~~~~  217 (834)
                      .||.....
T Consensus       618 ~CE~cptc  625 (783)
T KOG1226|consen  618 FCEKCPTC  625 (783)
T ss_pred             hhhcCCCC
Confidence            99987543

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=96.91  E-value=0.0018  Score=55.89  Aligned_cols=44  Identities=16%  Similarity=0.354  Sum_probs=33.5

Q ss_pred             CcEEEEecCC-CCCccc-----c------CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRY-----A------EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~-----~------~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.+. +.....     .      ..+.|.|.+|+.+|+|.|.|.+.|..|
T Consensus        32 P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G   87 (97)
T cd05869          32 PSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIG   87 (97)
T ss_pred             CEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCC
Confidence            4799999655 543211     1      125899999999999999999998876

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=96.90  E-value=0.0011  Score=56.30  Aligned_cols=44  Identities=20%  Similarity=0.337  Sum_probs=33.4

Q ss_pred             CcEEEEecCC-C--CCccc--c--CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-L--PLQRY--A--EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~--~~~~~--~--~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|.|.|.+- +  +.+.+  +  .+|.|.|.+|+.+|+|.|.|.+++.-+
T Consensus        34 p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~   84 (96)
T cd05727          34 LSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSS   84 (96)
T ss_pred             CEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEeccc
Confidence            4799999544 3  32221  2  478999999999999999999987643

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=96.86  E-value=0.0014  Score=55.56  Aligned_cols=42  Identities=26%  Similarity=0.449  Sum_probs=33.0

Q ss_pred             CcEEEEecCC-CCCc----c--ccCCCeEEEcccCCCCCeeEEEEEcCC
Q psy9228           2 AYIKWSRADG-LPLQ----R--YAEGNVLRITNARLQDSGKYKCEIQGH   43 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~----~--~~~~~~l~~~~~~~~d~g~y~c~~~~~   43 (834)
                      ++|.|.|.+. ++..    .  ....+.|.|.+++.+|+|.|.|.+.+.
T Consensus        25 ~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~   73 (89)
T cd04979          25 ASVVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVEH   73 (89)
T ss_pred             ceEEEEECCcccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEEecC
Confidence            5899999776 6543    1  224567999999999999999999754

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=96.84  E-value=0.0024  Score=52.27  Aligned_cols=44  Identities=16%  Similarity=0.345  Sum_probs=32.5

Q ss_pred             CcEEEEecCC-CCCc--cc--c--CCCeEEEcccCCC----CCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQ--RY--A--EGNVLRITNARLQ----DSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~--~~--~--~~~~l~~~~~~~~----d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.+. |...  .+  .  .++.|.|..++.+    |+|.|.|.++|..|
T Consensus        13 P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G   67 (77)
T cd05874          13 PSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERG   67 (77)
T ss_pred             CeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCC
Confidence            4899999665 6321  11  1  4789999888754    78999999998765

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A

Probab=96.83  E-value=0.00037  Score=35.23  Aligned_cols=12  Identities=58%  Similarity=1.821  Sum_probs=6.4

Q ss_pred             eeCCCCCCCCCC
Q psy9228         163 CICPPGFSGDRC  174 (834)
Q Consensus       163 C~C~~g~~G~~C  174 (834)
                      |.|++||+|++|
T Consensus         2 C~C~~G~~G~~C   13 (13)
T PF12661_consen    2 CQCPPGWTGPNC   13 (13)
T ss_dssp             EEE-TTEETTTT
T ss_pred             ccCcCCCcCCCC
Confidence            555566655555

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=96.82  E-value=0.0019  Score=55.55  Aligned_cols=44  Identities=25%  Similarity=0.494  Sum_probs=33.6

Q ss_pred             CcEEEEecCC-CCCccc-------c----CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRY-------A----EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~-------~----~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|.|.|.+. +.....       +    ....|+|.+|+.+|+|.|.|.+.|..|
T Consensus        31 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G   86 (96)
T cd05732          31 PEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIG   86 (96)
T ss_pred             CcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCC
Confidence            4799999665 543211       1    235899999999999999999998876

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=96.81  E-value=0.00073  Score=57.31  Aligned_cols=44  Identities=20%  Similarity=0.427  Sum_probs=35.4

Q ss_pred             CcEEEEecCC-CCCcccc------CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA------EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~------~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.+. |....+.      ....|+|.+|+.+|+|.|.|.+++..+
T Consensus        30 ~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g   80 (90)
T PF07679_consen   30 PTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSG   80 (90)
T ss_dssp             SEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTE
T ss_pred             CcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCC
Confidence            4799999755 6654333      356899999999999999999988765

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=96.81  E-value=0.002  Score=53.23  Aligned_cols=41  Identities=20%  Similarity=0.386  Sum_probs=32.1

Q ss_pred             cEEEEecCC-CCCccccCCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           3 YIKWSRADG-LPLQRYAEGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         3 ~~~w~~~~~-~~~~~~~~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      +|+|+|++. |.......+++|.|.++  .|+|.|.|.++|..|
T Consensus        30 ~I~W~k~g~~l~~~~~~~~s~L~i~~~--~d~g~Y~C~A~N~~G   71 (81)
T cd05749          30 EILWWQGGSPLGDPPAPSPSVLNVPGL--NETSKFSCEAHNAKG   71 (81)
T ss_pred             EEEEEECCEECCCCCCCCCCEEEEccc--cCCeEEEEEEEeccC
Confidence            699999665 65433345789999997  488999999998765

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=96.75  E-value=0.0022  Score=55.41  Aligned_cols=44  Identities=32%  Similarity=0.588  Sum_probs=32.8

Q ss_pred             CcEEEEecC-C--CCCc-----ccc------CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRAD-G--LPLQ-----RYA------EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~-~--~~~~-----~~~------~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .+|.|.|.+ |  ++..     .+.      ....|+|.+|+.+|+|.|.|.+.|..|
T Consensus        31 p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G   88 (98)
T cd05870          31 PEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRIG   88 (98)
T ss_pred             CeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccCC
Confidence            479999953 3  3321     111      135899999999999999999998876

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=96.73  E-value=0.0016  Score=54.46  Aligned_cols=44  Identities=25%  Similarity=0.425  Sum_probs=31.9

Q ss_pred             CcEEEEecCC-CCCcc-----cc------CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQR-----YA------EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~-----~~------~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ..|.|.+.+. +....     ..      ....|+|.+|+.+|+|.|.|.++|..+
T Consensus        18 ~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~   73 (84)
T cd05742          18 VDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTM   73 (84)
T ss_pred             EEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCC
Confidence            3699987554 32221     11      235899999999999999999987754

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=96.67  E-value=0.0018  Score=54.94  Aligned_cols=43  Identities=23%  Similarity=0.315  Sum_probs=35.0

Q ss_pred             CcEEEEecCC--CCCcccc---CCCeEEEcccCCCCCe-eEEEEEcCCC
Q psy9228           2 AYIKWSRADG--LPLQRYA---EGNVLRITNARLQDSG-KYKCEIQGHD   44 (834)
Q Consensus         2 ~~~~w~~~~~--~~~~~~~---~~~~l~~~~~~~~d~g-~y~c~~~~~~   44 (834)
                      .+|.|.+.+.  +....++   .+|.|.|.+|+.+|+| .|+|.+++.-
T Consensus        34 P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~   82 (95)
T cd05845          34 LRIYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPG   82 (95)
T ss_pred             CEEEEECCCCccccccccEEECCCceEEEEEEehhhCCCCeEEEEEccc
Confidence            4799998655  6655555   4799999999999999 7999998664

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>PF00354 Pentaxin: Pentaxin family; InterPro: IPR001759 Pentaxins (or pentraxins) [, ] are a family of proteins which show, under electron microscopy, a discoid arrangement of five noncovalently bound subunits

Probab=96.66  E-value=0.067  Score=52.55  Aligned_cols=136  Identities=17%  Similarity=0.152  Sum_probs=74.5

Q ss_pred             ceeEEEEEEEeeCCC--CeeEEEeccCCccccCCCCCeEEEEEECcEEEEEEecccEEEEeeeeecCCCeEEEEEEEEC-
Q psy9228         404 HLHFSIELSFKPTDY--NGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVGLVVLRSKVTLVPHEWVVVTIIKDF-  480 (834)
Q Consensus       404 ~~~~~i~~~frt~~~--~GlLl~~~~~~~~~~~~~~d~~~l~L~~G~l~~~~~~G~~~i~s~~~~~dg~wH~V~v~~~~-  480 (834)
                      -..+++.+++|+...  .+.||......     ....++.+.-..+.+.+.+  +...+.....+.+++||++.++++. 
T Consensus        24 L~~fTvC~w~k~~~~~~~~tifSYat~~-----~~nell~~~~~~~~~~l~i--~~~~~~~~~~~~~~~Whh~C~tW~s~   96 (195)
T PF00354_consen   24 LSAFTVCFWVKTDDSSNDGTIFSYATSS-----QDNELLLFGSSSGSLRLYI--NGSSVSFSGPIRDGQWHHICVTWDSS   96 (195)
T ss_dssp             BSEEEEEEEEEESGSGS-EEEEEEEETT-----EEEEEEEEEETTTEEEEEE--TTEEEEEEECS-TSS-EEEEEEEETT
T ss_pred             cccEEEEEEEEeccCCCceEEEEEccCC-----CCccEEEEEeCCceEEEEE--CCeEeEeccccCCCCcEEEEEEEecC
Confidence            457999999999875  67777543321     1122322222234554444  3223444556899999999999987 


Q ss_pred             -CeEEEEECCeeeeeeecCCCccccccCCCceeeccccCCCcccCcCcccccCceeEEeeeEEcCeeeeecc
Q psy9228         481 -KEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLIN  551 (834)
Q Consensus       481 -~~~~l~VD~~~~~~~~~~g~~~~~l~~~~~l~iGG~~~~~~~~~~~~~~~~gF~GCi~~v~ing~~~~~~~  551 (834)
                       ..+.|++||....... ... ...+...+.+.+|--.+.   ..........|.|=|.++.+=.+.+...+
T Consensus        97 ~G~~~ly~dG~~~~~~~-~~~-g~~i~~gG~~vlGQeQd~---~gG~fd~~q~F~G~i~~~~iWd~vLs~~e  163 (195)
T PF00354_consen   97 TGRWQLYVDGVRLSSTG-LAT-GHSIPGGGTLVLGQEQDS---YGGGFDESQAFVGEISDFNIWDRVLSPEE  163 (195)
T ss_dssp             TTEEEEEETTEEEEEEE-SST-T--B-SSEEEEESS-BSB---TTBTCSGGGB--EEEEEEEEESS---HHH
T ss_pred             CcEEEEEECCEeccccc-ccC-CceECCCCEEEECccccc---cCCCcCCccEeeEEEeceEEEeeeCCHHH
Confidence             4788999998433221 111 234455556666643321   22234456789999999999777666443

Proteins of the pentaxin family are involved in acute immunological responses []. Three of the principal members of the pentaxin family are serum proteins: namely, C-reactive protein (CRP) [], serum amyloid P component protein (SAP) [], and female protein (FP) []. CRP is expressed during acute phase response to tissue injury or inflammation in mammals. The protein resembles antibody and performs several functions associated with host defence: it promotes agglutination, bacterial capsular swelling and phagocytosis, and activates the classical complement pathway through its calcium-dependent binding to phosphocholine. CRPs have also been sequenced in an invertebrate, Limulus polyphemus (Atlantic horseshoe crab), where they are a normal constituent of the hemolymph. SAP is a vertebrate protein that is a precursor of amyloid component P. It is found in all types of amyloid deposits, in glomerular basement menbrane and in elastic fibres in blood vessels. SAP binds to various lipoprotein ligands in a calcium-dependent manner, and it has been suggested that, in mammals, this may have important implications in atherosclerosis and amyloidosis. FP is a SAP homologue found in Mesocricetus auratus (Golden hamster). The concentration of this plasma protein is altered by sex steroids and stimuli that elicit an acute phase response. Pentaxin proteins expressed in the nervous system are neural pentaxin I (NPI) and II (NPII) []. NPI and NPII are homologous and can exist within one species. It is suggested that both proteins mediate the uptake of synaptic macromolecules and play a role in synaptic plasticity. Apexin, a sperm acrosomal protein, is a homologue of NPII found in Cavia porcellus (Guinea pig) []. PTX3 (or TSG-14) protein is a cytokine-induced protein that is homologous to CRPs and SAPs, but its function is not yet known.; PDB: 2A3W_F 3KQR_C 3D5O_D 2A3X_G 1SAC_D 2W08_B 1GYK_B 1LGN_A 2A3Y_A 1B09_D ....

>KOG4260|consensus

Probab=96.65  E-value=0.0023  Score=62.62  Aligned_cols=63  Identities=22%  Similarity=0.686  Sum_probs=51.4

Q ss_pred             CccCCCCCCCCCCCCEeccCCCCCceEeeCCCCCCCCCCCCCCCCccC--CCCC--CCeeecCCCCeEEeCCCCc
Q psy9228         136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYP--GACG--DGSCQDVDGAMKCLCPIGT  206 (834)
Q Consensus       136 ~~C~~~~~~pC~n~g~C~~~~~~~~~~C~C~~g~~G~~Ce~~~~~C~~--~~C~--~g~C~~~~~~~~C~C~~g~  206 (834)
                      |+|. ..++||...-.|++..  ++|+|.+.+||.+.     .|+|.-  .-|.  |+.|.|..++|+|.|..|+
T Consensus       237 nEC~-~ep~~c~~~qfCvNte--GSf~C~dk~Gy~~g-----~d~C~~~~d~~~~kn~~c~ni~~~~r~v~f~~~  303 (350)
T KOG4260|consen  237 NECQ-NEPAPCKAHQFCVNTE--GSFKCEDKEGYKKG-----VDECQFCADVCASKNRPCMNIDGQYRCVCFSGL  303 (350)
T ss_pred             HHHh-cCCCCCChhheeecCC--CceEecccccccCC-----hHHhhhhhhhcccCCCCcccCCccEEEEecccc
Confidence            6886 4488999999999976  99999999999862     556665  4553  6889999999999998875

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=96.64  E-value=0.0019  Score=54.80  Aligned_cols=25  Identities=28%  Similarity=0.557  Sum_probs=23.2

Q ss_pred             CeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228          21 NVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus        21 ~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ..|+|.+|+.+|+|.|.|.+.|..|
T Consensus        55 ~~L~I~~v~~~D~G~Y~C~A~N~~G   79 (90)
T cd05858          55 EVLYLRNVTFEDAGEYTCLAGNSIG   79 (90)
T ss_pred             eEEEEccCCHHHCEEEEEEEEeCCC
Confidence            4799999999999999999998876

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>KOG4194|consensus

Probab=96.63  E-value=0.0025  Score=69.74  Aligned_cols=60  Identities=28%  Similarity=0.548  Sum_probs=46.8

Q ss_pred             CcEEEEecCC--CCCcccc------CCCeEEEcccCCCCCeeEEEEEcCCCCccCCcEEEEcCceeEEEcCCcce
Q psy9228           2 AYIKWSRADG--LPLQRYA------EGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNVERMMFVDGIGPF   68 (834)
Q Consensus         2 ~~~~w~~~~~--~~~~~~~------~~~~l~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~g~~cvd~~~~~   68 (834)
                      ..|.|.|++|  .|+.+.-      +++++-|.||+.+|+|+|+|++++.-|       .+..|..+.|...+.+
T Consensus       642 PeIawqkdggtdFPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG-------~isanAtL~V~e~p~f  709 (873)
T KOG4194|consen  642 PEIAWQKDGGTDFPAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAG-------QISANATLTVLETPSF  709 (873)
T ss_pred             cceeehhcCCCCCchhhhheeeecCCCCEEEEecccccccceeEEeeecccc-------ceeeceEEEEecCCcc
Confidence            4799999888  8884433      588999999999999999999988765       2224666777665444

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=96.62  E-value=0.004  Score=53.05  Aligned_cols=44  Identities=27%  Similarity=0.485  Sum_probs=34.0

Q ss_pred             CcEEEEecCC-CCCccc----cC-C--CeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRY----AE-G--NVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~----~~-~--~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .++.|.|.+. +....+    .. +  ..|.|.+++.+|+|.|.|.+.|..|
T Consensus        31 p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G   82 (92)
T cd05891          31 PEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYG   82 (92)
T ss_pred             CeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCC
Confidence            4789999777 544321    12 2  2799999999999999999998876

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=96.62  E-value=0.0025  Score=41.66  Aligned_cols=27  Identities=33%  Similarity=0.966  Sum_probs=22.1

Q ss_pred             CCCCCCCEeccCCCCCceEeeCCCCCCCCCC
Q psy9228         144 NNCINNGLCQDAATRIGYTCICPPGFSGDRC  174 (834)
Q Consensus       144 ~pC~n~g~C~~~~~~~~~~C~C~~g~~G~~C  174 (834)
                      ..|.++|+|+..    ..+|.|.+||+|+.|
T Consensus         6 ~~C~~~G~C~~~----~g~C~C~~g~~G~~C   32 (32)
T PF07974_consen    6 NICSGHGTCVSP----CGRCVCDSGYTGPDC   32 (32)
T ss_pred             CccCCCCEEeCC----CCEEECCCCCcCCCC
Confidence            469999999963    468999999999877

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=96.60  E-value=0.0021  Score=53.73  Aligned_cols=43  Identities=21%  Similarity=0.436  Sum_probs=30.7

Q ss_pred             CcEEEEecCC-----CCCc--ccc----CCCeEEEcccCCCCCeeEEEEEcCCC
Q psy9228           2 AYIKWSRADG-----LPLQ--RYA----EGNVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus         2 ~~~~w~~~~~-----~~~~--~~~----~~~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      ..+.|.+.++     +|..  ...    ....|.|.+++.+|+|.|.|.+++..
T Consensus        16 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~   69 (84)
T cd05861          16 VDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHEST   69 (84)
T ss_pred             cEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECc
Confidence            3689997443     2221  111    24589999999999999999998654

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=96.59  E-value=0.0039  Score=53.46  Aligned_cols=44  Identities=27%  Similarity=0.388  Sum_probs=33.4

Q ss_pred             CcEEEEecCC-CCCccc-----cCCCeEEEccc-----CCCCCeeEEEEEcCC-CC
Q psy9228           2 AYIKWSRADG-LPLQRY-----AEGNVLRITNA-----RLQDSGKYKCEIQGH-DS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~-----~~~~~l~~~~~-----~~~d~g~y~c~~~~~-~~   45 (834)
                      ++|+|.|++. |.....     ..++.|.|.++     ..+|+|.|.|.+.|. .+
T Consensus        29 p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G   84 (95)
T cd05722          29 PKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLG   84 (95)
T ss_pred             CEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECCccC
Confidence            5899999555 654322     14677888887     589999999999988 54

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=96.58  E-value=0.0022  Score=64.48  Aligned_cols=41  Identities=22%  Similarity=0.422  Sum_probs=33.4

Q ss_pred             CcEEEEecCC-CCCcccc----CCCeEEEcccCCCCCeeEEEEEcC
Q psy9228           2 AYIKWSRADG-LPLQRYA----EGNVLRITNARLQDSGKYKCEIQG   42 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~----~~~~l~~~~~~~~d~g~y~c~~~~   42 (834)
                      .+|+|.|++. |+...+.    .++.|.|.+|+.+|+|.|.|.++.
T Consensus       164 p~I~WyKng~~l~~~~r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~  209 (227)
T PHA02826        164 YTLTWYKNGNIVLYTDRIQLRNNNSTLVIKSATHDDSGIYTCNLRF  209 (227)
T ss_pred             ceEEEEECCEECCCCCCEEEeCCCCEEEECcCCHHhCEEEEEEEEE
Confidence            5899999666 7755443    356899999999999999999964

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=96.57  E-value=0.0039  Score=51.60  Aligned_cols=26  Identities=35%  Similarity=0.483  Sum_probs=23.8

Q ss_pred             CCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228          20 GNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus        20 ~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ...|.|.+++.+|+|.|.|.+.|..|
T Consensus        46 ~~~L~I~~~~~~D~G~Y~C~a~N~~G   71 (81)
T cd05765          46 IGQLVIYNAQPQDAGLYTCTARNSGG   71 (81)
T ss_pred             ccEEEEccCCcccCEEEEEEEecCCc
Confidence            46899999999999999999998876

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A

Probab=96.55  E-value=0.00098  Score=33.73  Aligned_cols=13  Identities=38%  Similarity=1.339  Sum_probs=8.0

Q ss_pred             eeecCCCCCCCCC
Q psy9228         593 NCSCLTGYSGDHC  605 (834)
Q Consensus       593 ~C~C~~G~~G~~C  605 (834)
                      +|.|++||+|++|
T Consensus         1 ~C~C~~G~~G~~C   13 (13)
T PF12661_consen    1 TCQCPPGWTGPNC   13 (13)
T ss_dssp             EEEE-TTEETTTT
T ss_pred             CccCcCCCcCCCC
Confidence            4667777777665

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=96.51  E-value=0.003  Score=53.59  Aligned_cols=41  Identities=22%  Similarity=0.343  Sum_probs=30.4

Q ss_pred             CcEEEEecCC-CC------Ccccc--CCCeEEEcccCCCCCeeEEEEEcC
Q psy9228           2 AYIKWSRADG-LP------LQRYA--EGNVLRITNARLQDSGKYKCEIQG   42 (834)
Q Consensus         2 ~~~~w~~~~~-~~------~~~~~--~~~~l~~~~~~~~d~g~y~c~~~~   42 (834)
                      ++|.|.|++. .+      ...+.  .++.|.|.+++.+|+|.|.|.+.+
T Consensus        25 p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~~   74 (91)
T cd05871          25 ASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAGVYTCTAVE   74 (91)
T ss_pred             ceEEEEEECCCCCccccccccccEEEecCeEEEeeCChhHCEEEEEEEEc
Confidence            4799998543 22      12222  467899999999999999999973

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=96.50  E-value=0.0042  Score=54.80  Aligned_cols=44  Identities=23%  Similarity=0.480  Sum_probs=33.3

Q ss_pred             CcEEEEecCC-CCC-c-ccc---------CCCeEEEcccC-CCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPL-Q-RYA---------EGNVLRITNAR-LQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~-~-~~~---------~~~~l~~~~~~-~~d~g~y~c~~~~~~~   45 (834)
                      ++++|+|.+. |+. + ++.         .+..|+|.+|. .+|.|.|.|.+.|..|
T Consensus        38 p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G   94 (109)
T cd05773          38 VQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLG   94 (109)
T ss_pred             CEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCc
Confidence            5899999544 653 2 111         14689999997 6999999999999876

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=96.49  E-value=0.0041  Score=53.22  Aligned_cols=42  Identities=26%  Similarity=0.464  Sum_probs=32.9

Q ss_pred             cEEEEecCC-CCCc-------ccc--CCCeEEEcccCCCCCeeEEEEEcCCC
Q psy9228           3 YIKWSRADG-LPLQ-------RYA--EGNVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus         3 ~~~w~~~~~-~~~~-------~~~--~~~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      +++|.|.++ +...       .++  .+..|.|..+..+|+|.|.|+..|..
T Consensus        42 ~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~~rN~t   93 (104)
T cd05896          42 SLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCVLRNST   93 (104)
T ss_pred             eEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEEECCCC
Confidence            689999754 3221       133  68999999999999999999997654

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=96.47  E-value=0.0032  Score=53.84  Aligned_cols=43  Identities=26%  Similarity=0.507  Sum_probs=31.2

Q ss_pred             CcEEEEecCC-C---------CCcccc------CCCeEEEcccCCCCCeeEEEEEcCCC
Q psy9228           2 AYIKWSRADG-L---------PLQRYA------EGNVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus         2 ~~~~w~~~~~-~---------~~~~~~------~~~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      .+|.|.|.++ +         ...+..      .+..|.|.+|+.+|+|.|.|.+...+
T Consensus        27 ~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t~~   85 (95)
T cd05882          27 SSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFTMP   85 (95)
T ss_pred             CeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEeec
Confidence            4799998665 2         112211      14699999999999999999997543

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional

Probab=96.39  E-value=0.0024  Score=55.05  Aligned_cols=39  Identities=28%  Similarity=0.687  Sum_probs=28.5

Q ss_pred             ccCCCCCCCCCCCCEeccCCCCCceEeeCCCCCCCCCCCC
Q psy9228         137 TCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSV  176 (834)
Q Consensus       137 ~C~~~~~~pC~n~g~C~~~~~~~~~~C~C~~g~~G~~Ce~  176 (834)
                      .|.....+-|.|| +|.-.+....+.|.|+.||+|.+||+
T Consensus        44 ~Cp~ey~~YClHG-~C~yI~dl~~~~CrC~~GYtGeRCEh   82 (139)
T PHA03099         44 LCGPEGDGYCLHG-DCIHARDIDGMYCRCSHGYTGIRCQH   82 (139)
T ss_pred             cCChhhCCEeECC-EEEeeccCCCceeECCCCcccccccc
Confidence            4543347889997 89866656778888888888888865

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=96.38  E-value=0.0043  Score=51.62  Aligned_cols=40  Identities=25%  Similarity=0.314  Sum_probs=32.7

Q ss_pred             cEEEEecCC-CCCccccCCCeEEEcccCCCCCeeEEEEEcCCC
Q psy9228           3 YIKWSRADG-LPLQRYAEGNVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus         3 ~~~w~~~~~-~~~~~~~~~~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      ++.|.|.+. ++.  ...+..|.|.+++.+|+|.|.|.+.+..
T Consensus        31 ~~~w~k~g~~~~~--~~~~~~l~I~~~~~~dsG~Y~C~~~~~~   71 (83)
T cd05753          31 KVTYYRDGKAKKY--SHSNSNLSIPQATLSDSGSYHCSGIIGS   71 (83)
T ss_pred             EEEEEECCeEccc--cCCCceEEECccCHHHCEEEEEEEEeCC
Confidence            689999666 653  2345789999999999999999998765

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=96.34  E-value=0.0041  Score=51.67  Aligned_cols=40  Identities=25%  Similarity=0.241  Sum_probs=32.6

Q ss_pred             CcEEEEecCC-CCCcccc--CCCeEEEcccCCCCCeeEEEEEc
Q psy9228           2 AYIKWSRADG-LPLQRYA--EGNVLRITNARLQDSGKYKCEIQ   41 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~--~~~~l~~~~~~~~d~g~y~c~~~   41 (834)
                      |+++|.+.+. |+.+.+.  .+.-|.|.+++.+|+|.|.|.+.
T Consensus        25 A~v~W~~ng~~l~~~~r~~~~~~GLlI~~~~~~dsG~Y~C~s~   67 (85)
T cd05872          25 ASPVWLFNGTPLNAQFSYRVGTDGLLILVTSPEHSGTYRCYSE   67 (85)
T ss_pred             ccEEEEECCcccCCCcceEEeCCCCEEEECCHhhCEEEEEEEe
Confidence            6899999777 8765444  34558899999999999999996

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=96.34  E-value=0.0047  Score=40.39  Aligned_cols=27  Identities=33%  Similarity=0.895  Sum_probs=23.1

Q ss_pred             CCCCCCCeecccCCCCCceeeecCCCCCCCCC
Q psy9228         574 KPCQNYGICYPTDTSERGYNCSCLTGYSGDHC  605 (834)
Q Consensus       574 ~pC~ngg~C~~~~~~~~~~~C~C~~G~~G~~C  605 (834)
                      ..|.++|+|+..     ..+|.|.+||+|+.|
T Consensus         6 ~~C~~~G~C~~~-----~g~C~C~~g~~G~~C   32 (32)
T PF07974_consen    6 NICSGHGTCVSP-----CGRCVCDSGYTGPDC   32 (32)
T ss_pred             CccCCCCEEeCC-----CCEEECCCCCcCCCC
Confidence            479999999876     468999999999876

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=96.33  E-value=0.0044  Score=50.81  Aligned_cols=36  Identities=36%  Similarity=0.662  Sum_probs=29.8

Q ss_pred             cEEEEecCC-CCCccccCCCeEEEcccCCCCCeeEEEEEcCC
Q psy9228           3 YIKWSRADG-LPLQRYAEGNVLRITNARLQDSGKYKCEIQGH   43 (834)
Q Consensus         3 ~~~w~~~~~-~~~~~~~~~~~l~~~~~~~~d~g~y~c~~~~~   43 (834)
                      .+.|.|.+. |.    ..++.|+|.++ .+|+|.|.|.+.+.
T Consensus        32 ~~~W~kng~~l~----~~~~~l~i~~~-~~dsG~Y~C~a~~~   68 (78)
T cd05752          32 STQWYHNGKLLE----TTTNSYRIRAA-NNDSGEYRCQTQGS   68 (78)
T ss_pred             cEEEEECCEEee----ccCCeEEEeec-ccCCEEeEEECCCC
Confidence            689999554 62    35679999999 99999999999765

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>PF12662 cEGF: Complement Clr-like EGF-like

Probab=96.32  E-value=0.0034  Score=37.77  Aligned_cols=19  Identities=47%  Similarity=1.207  Sum_probs=13.0

Q ss_pred             ceEeeCCCCCC----CCCCCCCCC
Q psy9228         160 GYTCICPPGFS----GDRCSVLGE  179 (834)
Q Consensus       160 ~~~C~C~~g~~----G~~Ce~~~~  179 (834)
                      +|+|.|++||.    |..| +++|
T Consensus         1 sy~C~C~~Gy~l~~d~~~C-~DId   23 (24)
T PF12662_consen    1 SYTCSCPPGYQLSPDGRSC-EDID   23 (24)
T ss_pred             CEEeeCCCCCcCCCCCCcc-ccCC
Confidence            58888888885    5566 3444

>KOG1834|consensus

Probab=96.20  E-value=0.057  Score=59.56  Aligned_cols=157  Identities=13%  Similarity=0.086  Sum_probs=100.8

Q ss_pred             eeEEcCCceeeechh-hhhhccCcceEEEEEEeCC-------CCeeEEecCCCCCCCCCCcceEEEEEECCEEEEEEEcC
Q psy9228         653 EVHFLGEGYVELKKE-LIEERRNEETIAFDFVTDD-------KNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLG  724 (834)
Q Consensus       653 ~~~F~g~s~~~~~~~-~~~~~~~~~~i~~~frT~~-------~~GlLl~~~~~~~~~~~~~~~~~l~l~~G~l~~~~~~g  724 (834)
                      -+.|+|..-+.++.. ........++|+||+|-..       ..-.||-..++.   ..+....+|++.+=+|.|.+.-.
T Consensus       344 i~eFdG~qgv~vpdg~~~g~l~dhFTlSfwMkHg~~p~~~~~eketIlCnsdk~---emnrhHyslyvh~Crl~fllr~d  420 (952)
T KOG1834|consen  344 IFEFDGTQGVTVPDGNVSGSLPDHFTLSFWMKHGPGPKDEQSEKETILCNSDKT---EMNRHHYSLYVHGCRLEFLLRRD  420 (952)
T ss_pred             EEEEcCceeeEccCCCCCCCCCCceEEEEeeecCCCCccccccceeEEeccccc---ccccceeEEEEeccEEEEEEccC
Confidence            377888554555422 1112247789999998532       223566555442   34567899999999999998764


Q ss_pred             CcE------EEEEeCCceecCCCcEEEEEEEECCEEEEEEcCeeeecc--cCCCCccceecCCceEEcCcCCCCCCCCCc
Q psy9228         725 DGV------VTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKG--ESPGSQDVINTRGNIYLGGTPNMDLMTGGR  796 (834)
Q Consensus       725 ~~~------~~l~~s~~~~nDg~wH~V~i~r~~~~~~l~VD~~~~~~~--~~~~~~~~l~~~~~lyiGG~p~~~~~~~~~  796 (834)
                      .+.      .....+-..++|..||+-.+..+.-.++|+|||..-...  ........-.....|.||.-..........
T Consensus       421 ~~~~~~fRpaef~Wkl~qVCD~EWH~Y~ln~efp~VtlyvDG~Sfep~~i~ddwplHpsk~~tqLvVGACW~g~~~~~l~  500 (952)
T KOG1834|consen  421 AGATSDFRPAEFHWKLPQVCDNEWHHYVLNVEFPDVTLYVDGKSFEPPLITDDWPLHPSKIETQLVVGACWQGRQQKPLK  500 (952)
T ss_pred             ccccccccchheeccchhhhhhhhheeEEeecCceEEEEEcCcccCCceeccCCccCcccccceeEEeeeccCccccchh
Confidence            332      222224457999999999999999889999999753321  111111122244568888665543333345


Q ss_pred             cCCCceEEEEEEEECC
Q psy9228         797 YVHPMSGLMMNIHIQN  812 (834)
Q Consensus       797 ~~~~F~GCi~~v~in~  812 (834)
                      ....|+|-+..|.+-.
T Consensus       501 ~aqfFrG~Lasltlrs  516 (952)
T KOG1834|consen  501 LAQFFRGQLASLTLRS  516 (952)
T ss_pred             HHHHhhcccceeEEec
Confidence            6778999999998843

>KOG3513|consensus

Probab=96.15  E-value=0.0051  Score=72.79  Aligned_cols=44  Identities=25%  Similarity=0.454  Sum_probs=38.1

Q ss_pred             CcEEEEecCC-CCCcccc---CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA---EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~---~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      +.+.|.|.++ |..+.+.   .+++|+|.|++.+|+|+|+|.++|..+
T Consensus       456 p~~~W~k~~~~~~~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G  503 (1051)
T KOG3513|consen  456 PKVSWLKGGEKLLQSGRIRILEDGTLEISNVTRSDAGKYTCVAENKLG  503 (1051)
T ss_pred             ceEEEEcCCcccccCceEEECCCCcEEecccCcccCcEEEEEEEcccC
Confidence            4789999888 6665555   689999999999999999999998876

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=95.93  E-value=0.011  Score=51.02  Aligned_cols=43  Identities=28%  Similarity=0.501  Sum_probs=32.5

Q ss_pred             cEEEEecCC-CCCc---ccc-C-C-------CeEEEcccCCCC-CeeEEEEEcCCCC
Q psy9228           3 YIKWSRADG-LPLQ---RYA-E-G-------NVLRITNARLQD-SGKYKCEIQGHDS   45 (834)
Q Consensus         3 ~~~w~~~~~-~~~~---~~~-~-~-------~~l~~~~~~~~d-~g~y~c~~~~~~~   45 (834)
                      +|.|+|.+. |+..   +.. . .       ..|+|.+|+.+| .|.|.|.+.|..|
T Consensus        33 ~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G   89 (98)
T cd05758          33 RIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFG   89 (98)
T ss_pred             EeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCC
Confidence            699999766 7643   121 1 1       379999999955 8999999999877

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>PHA02887 EGF-like protein; Provisional

Probab=95.87  E-value=0.0093  Score=50.59  Aligned_cols=40  Identities=35%  Similarity=0.779  Sum_probs=31.0

Q ss_pred             CccCCCCCCCCCCCCEeccCCCCCceEeeCCCCCCCCCCCC
Q psy9228         136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSV  176 (834)
Q Consensus       136 ~~C~~~~~~pC~n~g~C~~~~~~~~~~C~C~~g~~G~~Ce~  176 (834)
                      .+|.+...+-|.| |+|.-........|.|+.||+|.+||+
T Consensus        84 ~pC~~eyk~YCiH-G~C~yI~dL~epsCrC~~GYtG~RCE~  123 (126)
T PHA02887         84 EKCKNDFNDFCIN-GECMNIIDLDEKFCICNKGYTGIRCDE  123 (126)
T ss_pred             cccChHhhCEeeC-CEEEccccCCCceeECCCCcccCCCCc
Confidence            3565434678996 599876666789999999999999975

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=95.75  E-value=0.014  Score=48.95  Aligned_cols=26  Identities=31%  Similarity=0.590  Sum_probs=23.1

Q ss_pred             CCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228          20 GNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus        20 ~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ...|.|.+++.+|+|.|.|.++|..+
T Consensus        49 ~s~L~I~~~~~~DsG~Y~C~a~n~~~   74 (86)
T cd05862          49 SSTLTIENVTLSDLGRYTCTASSGQM   74 (86)
T ss_pred             eeEEEEecCCcccCEEEEEEEeecce
Confidence            45899999999999999999988654

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=95.66  E-value=0.014  Score=50.03  Aligned_cols=24  Identities=25%  Similarity=0.556  Sum_probs=21.4

Q ss_pred             CCeEEEcccCCCCCeeEEEEEcCC
Q psy9228          20 GNVLRITNARLQDSGKYKCEIQGH   43 (834)
Q Consensus        20 ~~~l~~~~~~~~d~g~y~c~~~~~   43 (834)
                      +..|+|.+|+.+|+|.|.|.+...
T Consensus        61 ~~sL~I~~v~~~DsG~Y~C~~~t~   84 (95)
T cd07701          61 ELSISISDVSLSDEGQYTCSLFTM   84 (95)
T ss_pred             cEEEEECcCCcccCEEEEEEeEee
Confidence            358999999999999999999754

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=95.63  E-value=0.016  Score=48.29  Aligned_cols=44  Identities=20%  Similarity=0.376  Sum_probs=32.9

Q ss_pred             CcEEEEecCC-CCCcccc-------CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA-------EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~-------~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      +.+.|.|.+. |......       ....|.|.+|+.+|+|.|.|.+.+..+
T Consensus        24 ~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g   75 (85)
T cd05729          24 PTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYG   75 (85)
T ss_pred             CeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCc
Confidence            4799999655 5532111       234799999999999999999987764

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=95.51  E-value=0.017  Score=49.18  Aligned_cols=23  Identities=35%  Similarity=0.690  Sum_probs=20.9

Q ss_pred             eEEEcccCCCCCeeEEEEEcCCC
Q psy9228          22 VLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus        22 ~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      .|+|.+++.+|+|+|.|.+.+..
T Consensus        66 ~L~I~~l~~sDsgtY~C~v~~~~   88 (94)
T cd07690          66 PLIIKNLKIEDSDTYICEVEDKK   88 (94)
T ss_pred             EEEECCCCHHHCEEEEEEECCcc
Confidence            59999999999999999997654

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>PF02973 Sialidase: Sialidase, N-terminal domain; InterPro: IPR004124 O-Glycosyl hydrolases 3

Probab=95.43  E-value=0.88  Score=43.87  Aligned_cols=132  Identities=17%  Similarity=0.173  Sum_probs=80.1

Q ss_pred             eEEEEEEEeeCCCCeeE--EEeccCCccccCCCCCeEEEEEECcEEEEEEecc--c--EEEEee-----eeecCCCeEEE
Q psy9228         406 HFSIELSFKPTDYNGLI--MYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVG--L--VVLRSK-----VTLVPHEWVVV  474 (834)
Q Consensus       406 ~~~i~~~frt~~~~GlL--l~~~~~~~~~~~~~~d~~~l~L~~G~l~~~~~~G--~--~~i~s~-----~~~~dg~wH~V  474 (834)
                      +.+|.++|++...+++-  |...+..     ....|+.|.+.++.+-+.+.-.  .  .....+     ...++-.||.|
T Consensus        34 ~gTI~i~Fk~~~~~~~~sLfsiSn~~-----~~n~YF~lyv~~~~~G~E~R~~~~~~~y~~~~~~~v~~~~~~~~~~~tv  108 (190)
T PF02973_consen   34 EGTIVIRFKSDSNSGIQSLFSISNST-----KGNEYFSLYVSNNKLGFELRDTKGNQNYNFSRPAKVRGGYKNNVTFNTV  108 (190)
T ss_dssp             SEEEEEEEEESS-SSEEEEEEEE-TS-----TTSEEEEEEEETTEEEEEEEETTTTCEEEEEESSE--SEETTEES-EEE
T ss_pred             ccEEEEEEecCCCcceeEEEEecCCC-----CccceEEEEEECCEEEEEEecCCCCcccccccccEecccccCCceEEEE
Confidence            57899999998776553  3334332     2349999999999887777543  1  122222     23455679999


Q ss_pred             EEEEE--CCeEEEEECCeeeeeeecCCCcc-ccccCCCceeeccccCCCcccCcCcccccCceeEEeeeEEcCeeeee
Q psy9228         475 TIIKD--FKEGKLSVGGEPLIVGSTPGEKL-QVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDL  549 (834)
Q Consensus       475 ~v~~~--~~~~~l~VD~~~~~~~~~~g~~~-~~l~~~~~l~iGG~~~~~~~~~~~~~~~~gF~GCi~~v~ing~~~~~  549 (834)
                      .+..+  .+..+|++||........+...+ ..+.--..++||+.....       ...-+|.|-|++|.+-.+.++-
T Consensus       109 a~~ad~~~~~ykly~NG~~v~~~~~~~~~Fis~i~~~n~~~iG~t~R~g-------~~~y~f~G~I~~l~iYn~aLsd  179 (190)
T PF02973_consen  109 AFVADSKNKGYKLYVNGELVSTLSSKSGNFISDIPGLNSVQIGGTNRAG-------SNAYPFNGTIDNLKIYNRALSD  179 (190)
T ss_dssp             EEEEETTTTEEEEEETTCEEEEEEECTSS-GGGSTT--EEEESSEEETT-------EEES--EEEEEEEEEESS---H
T ss_pred             EEEEecCCCeEEEEeCCeeEEEeccccccHhhcCcCCceEEEcceEeCC-------CceecccceEEEEEEEcCcCCH
Confidence            99998  77899999995554433332211 122223468999986532       2346899999999997776654

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Sialidases (GH33 from CAZY) hydrolyse alpha-(2->3)-, alpha-(2->6)-, alpha-(2->8)-glycosidic linkages of terminal sialic residues in oligosaccharides, glycoproteins, glycolipids, colominic acid and synthetic substrates. Sialidases may act as pathogenic factors in microbial infections []. The 1.8 A structure of trans-sialidase from leech (Macrobdella decora, Q27701 from SWISSPROT) in complex with 2-deoxy-2, 3-didehydro-NeuAc was solved. The refined model comprising residues 81-769 has a catalytic beta-propeller domain, a N-terminal lectin-like domain and an irregular beta-stranded domain inserted into the catalytic domain [].; GO: 0004308 exo-alpha-sialidase activity, 0005975 carbohydrate metabolic process; PDB: 2JKB_A 2VW2_A 2VW0_A 2VW1_A 2V73_B 2V72_A 1SLI_A 1SLL_A 2SLI_A 4SLI_A ....

>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins

Probab=95.41  E-value=0.01  Score=40.04  Aligned_cols=26  Identities=31%  Similarity=0.937  Sum_probs=17.4

Q ss_pred             CCCC-CCeeecCCCCeEEeCCCCcccC
Q psy9228         184 GACG-DGSCQDVDGAMKCLCPIGTAGK  209 (834)
Q Consensus       184 ~~C~-~g~C~~~~~~~~C~C~~g~~G~  209 (834)
                      ..|. |++|++..++|.|.|++||.|.
T Consensus         6 ~~C~~nA~C~~~~~~~~C~C~~Gy~Gd   32 (36)
T PF12947_consen    6 GGCHPNATCTNTGGSYTCTCKPGYEGD   32 (36)
T ss_dssp             GGS-TTCEEEE-TTSEEEEE-CEEECC
T ss_pred             CCCCCCcEeecCCCCEEeECCCCCccC
Confidence            3565 5788888888888888888764

; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=95.39  E-value=0.023  Score=48.96  Aligned_cols=44  Identities=18%  Similarity=0.288  Sum_probs=29.1

Q ss_pred             CcEEEEecCC-CCCc------ccc--CCCeEEEc-----ccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQ------RYA--EGNVLRIT-----NARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~------~~~--~~~~l~~~-----~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.+. |...      +..  .++.|.+.     +++.+|+|.|.|.++|..|
T Consensus        31 p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~G   88 (100)
T cd07693          31 PTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHNSLG   88 (100)
T ss_pred             CEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEEEEEEcccc
Confidence            3799999655 6541      111  34443332     3479999999999998876

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=95.30  E-value=0.028  Score=49.64  Aligned_cols=25  Identities=40%  Similarity=0.699  Sum_probs=22.5

Q ss_pred             CCCeEEEcccCCCCCeeEEEEEcCC
Q psy9228          19 EGNVLRITNARLQDSGKYKCEIQGH   43 (834)
Q Consensus        19 ~~~~l~~~~~~~~d~g~y~c~~~~~   43 (834)
                      .+..|+|.|++.+|+|+|.|...++
T Consensus        72 ~~asL~I~nl~~sDsG~Y~C~V~~g   96 (112)
T cd05900          72 SDATLEITELRSNDSGTYRCEVMHG   96 (112)
T ss_pred             CCcEEEEeecccccCEEEEEEEecC
Confidence            4679999999999999999999755

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=95.30  E-value=0.015  Score=58.58  Aligned_cols=44  Identities=30%  Similarity=0.436  Sum_probs=32.6

Q ss_pred             CcEEEEecCCC-----CCcc---------c--cCCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADGL-----PLQR---------Y--AEGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~~-----~~~~---------~--~~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .+|+|.|.+.+     +..+         +  ..++.|+|.+|+.+|+|.|.|++.|..+
T Consensus        63 ~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~DsG~Y~C~a~N~~~  122 (227)
T PHA02826         63 YNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINIDEGIYICTISSGNI  122 (227)
T ss_pred             ccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHHCEEEEEEEEECCc
Confidence            48999996643     1111         1  1357999999999999999999987543

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=95.24  E-value=0.031  Score=45.75  Aligned_cols=45  Identities=24%  Similarity=0.332  Sum_probs=34.9

Q ss_pred             CCcEEEEecCC-CCCcccc-CC-------CeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           1 NAYIKWSRADG-LPLQRYA-EG-------NVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         1 ~~~~~w~~~~~-~~~~~~~-~~-------~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      +++|+|.|.+. |+..... ..       ++|+|.-+..+|.+.|.|.+.|...
T Consensus        14 ~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~   67 (80)
T cd05885          14 AATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPAL   67 (80)
T ss_pred             CCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhh
Confidence            46999999666 8764322 12       3799999999999999999987754

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins

Probab=95.23  E-value=0.0086  Score=40.43  Aligned_cols=28  Identities=39%  Similarity=1.035  Sum_probs=21.7

Q ss_pred             CCCCCCCCEeccCCCCCceEeeCCCCCCCC
Q psy9228         143 HNNCINNGLCQDAATRIGYTCICPPGFSGD  172 (834)
Q Consensus       143 ~~pC~n~g~C~~~~~~~~~~C~C~~g~~G~  172 (834)
                      ...|..+++|++..  +.|+|.|++||.|.
T Consensus         5 ~~~C~~nA~C~~~~--~~~~C~C~~Gy~Gd   32 (36)
T PF12947_consen    5 NGGCHPNATCTNTG--GSYTCTCKPGYEGD   32 (36)
T ss_dssp             GGGS-TTCEEEE-T--TSEEEEE-CEEECC
T ss_pred             CCCCCCCcEeecCC--CCEEeECCCCCccC
Confidence            45689999999987  69999999999874

; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.

>smart00560 LamGL LamG-like jellyroll fold domain

Probab=95.00  E-value=0.8  Score=41.92  Aligned_cols=69  Identities=22%  Similarity=0.200  Sum_probs=45.2

Q ss_pred             CCCeEEEEEEEEC--CeEEEEECCeeeeeeecCCCccccccCCCceeeccccCCCcccCcCcccccCceeEEeeeEEcCe
Q psy9228         468 PHEWVVVTIIKDF--KEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGS  545 (834)
Q Consensus       468 dg~wH~V~v~~~~--~~~~l~VD~~~~~~~~~~g~~~~~l~~~~~l~iGG~~~~~~~~~~~~~~~~gF~GCi~~v~ing~  545 (834)
                      .++||+|.+..+.  ..++|+||+.........     ......++.+|.....      .......|.|.|.+++|-..
T Consensus        60 ~~~W~hva~v~d~~~g~~~lYvnG~~~~~~~~~-----~~~~~~~~~iG~~~~~------~~~~~~~f~G~Idevriy~~  128 (133)
T smart00560       60 IGVWVHLAGVYDGGAGKLSLYVNGVEVATSETQ-----PSPSSGNLPQGGRILL------GGAGGENFSGRLDEVRVYNR  128 (133)
T ss_pred             CCCEEEEEEEEECCCCeEEEEECCEEccccccC-----CcccCCceEEeeeccC------CCCCCCCceEEeeEEEEecc
Confidence            3999999999998  789999999765432211     1123456778731110      01123579999999999665


Q ss_pred             ee
Q psy9228         546 EL  547 (834)
Q Consensus       546 ~~  547 (834)
                      .+
T Consensus       129 aL  130 (133)
T smart00560      129 AL  130 (133)
T ss_pred             cc
Confidence            43

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=94.87  E-value=0.042  Score=47.88  Aligned_cols=26  Identities=23%  Similarity=0.317  Sum_probs=23.4

Q ss_pred             CCCeEEEcccCCCCCeeEEEEEcCCC
Q psy9228          19 EGNVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus        19 ~~~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      .++.|+|.+|+.+|+|.|.|...+..
T Consensus        68 ~ngSL~I~~v~~~D~G~Y~~~v~~~~   93 (105)
T cd05774          68 PNGSLLIQNVTQKDTGFYTLQTITTN   93 (105)
T ss_pred             CCCcEEEecCCcccCEEEEEEEEeCC
Confidence            46899999999999999999997665

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>PHA02887 EGF-like protein; Provisional

Probab=94.62  E-value=0.029  Score=47.72  Aligned_cols=36  Identities=31%  Similarity=0.778  Sum_probs=28.6

Q ss_pred             CCccC---CCCCCCeeecC--CCCeEEeCCCCcccCccccc
Q psy9228         179 EPCYP---GACGDGSCQDV--DGAMKCLCPIGTAGKRCEQK  214 (834)
Q Consensus       179 ~~C~~---~~C~~g~C~~~--~~~~~C~C~~g~~G~~Ce~~  214 (834)
                      .+|..   +-|.||+|.-.  .....|.|+.||+|.+||.-
T Consensus        84 ~pC~~eyk~YCiHG~C~yI~dL~epsCrC~~GYtG~RCE~v  124 (126)
T PHA02887         84 EKCKNDFNDFCINGECMNIIDLDEKFCICNKGYTGIRCDEV  124 (126)
T ss_pred             cccChHhhCEeeCCEEEccccCCCceeECCCCcccCCCCcc
Confidence            45554   56888999855  47899999999999999863

>PHA02785 IL-beta-binding protein; Provisional

Probab=94.46  E-value=0.041  Score=59.08  Aligned_cols=44  Identities=23%  Similarity=0.308  Sum_probs=33.5

Q ss_pred             CcEEEEecCC-CCCccccC-CCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYAE-GNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~~-~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .+|+|.|.++ ++...... +..|.|.+++.+|+|.|.|.+.|..+
T Consensus        61 ~~i~W~K~g~~~~~~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g  106 (326)
T PHA02785         61 LDILWEKRGADNDRIIPIDNGSNMLILNPTQSDSGIYICITKNETY  106 (326)
T ss_pred             ceEEEEECCCccceEEEccCCceEEEcccCcccCeEEEEEEECCCc
Confidence            3699999765 55433333 44599999999999999999987653

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=94.43  E-value=0.051  Score=47.98  Aligned_cols=25  Identities=32%  Similarity=0.557  Sum_probs=22.5

Q ss_pred             CCeEEEcccCCCCCeeEEEEEcCCC
Q psy9228          20 GNVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus        20 ~~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      +..|+|.+|+.+|+|+|.|....+.
T Consensus        78 ~asL~i~~v~~sD~G~Y~C~V~~g~  102 (117)
T cd05901          78 DASLTIVKLRASDAGVYRCEVMHGI  102 (117)
T ss_pred             ceEEEEcccccccCEEEEEEEEECC
Confidence            5799999999999999999997654

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=94.35  E-value=0.057  Score=45.78  Aligned_cols=41  Identities=12%  Similarity=0.330  Sum_probs=31.3

Q ss_pred             cEEEEecCC-CCCcccc---CCCeEEEcccCCCCCeeEEEEEcCC
Q psy9228           3 YIKWSRADG-LPLQRYA---EGNVLRITNARLQDSGKYKCEIQGH   43 (834)
Q Consensus         3 ~~~w~~~~~-~~~~~~~---~~~~l~~~~~~~~d~g~y~c~~~~~   43 (834)
                      .+.|.|++. ++.....   ....|.|.+|+.+|+|+|.|.+.+.
T Consensus        31 ~f~l~k~g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751          31 EYRLYREGSTFAVKKPPEPQNKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             EEEEEECCCCccccccCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence            577888665 5543221   3567999999999999999999765

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional

Probab=94.21  E-value=0.035  Score=48.05  Aligned_cols=37  Identities=35%  Similarity=0.779  Sum_probs=29.2

Q ss_pred             CCCccC---CCCCCCeeecCC--CCeEEeCCCCcccCccccc
Q psy9228         178 GEPCYP---GACGDGSCQDVD--GAMKCLCPIGTAGKRCEQK  214 (834)
Q Consensus       178 ~~~C~~---~~C~~g~C~~~~--~~~~C~C~~g~~G~~Ce~~  214 (834)
                      +.+|.+   +-|.||+|.-..  +.+.|.|+.||+|.+||..
T Consensus        42 i~~Cp~ey~~YClHG~C~yI~dl~~~~CrC~~GYtGeRCEh~   83 (139)
T PHA03099         42 IRLCGPEGDGYCLHGDCIHARDIDGMYCRCSHGYTGIRCQHV   83 (139)
T ss_pred             cccCChhhCCEeECCEEEeeccCCCceeECCCCcccccccce
Confidence            335544   568889998554  8899999999999999875

>PHA02785 IL-beta-binding protein; Provisional

Probab=94.19  E-value=0.048  Score=58.59  Aligned_cols=43  Identities=28%  Similarity=0.463  Sum_probs=33.8

Q ss_pred             CcEEEEecCC-CCCcccc--CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA--EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~--~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.| +. +...+..  .++.|.|.+|+.+|+|.|.|.+.+..+
T Consensus       156 ~~i~W~k-~~~~~~~r~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g  201 (326)
T PHA02785        156 ADIIWSG-HRRLRNKRLKQRTPGIITIEDVRKNDAGYYTCVLKYIYG  201 (326)
T ss_pred             ceEEEcc-CCccCCcceEecCCCeEEEeecChhhCeEEEEEEEeccC
Confidence            5799988 45 5444432  467999999999999999999987654

>smart00410 IG_like Immunoglobulin like

Probab=93.61  E-value=0.13  Score=42.19  Aligned_cols=44  Identities=25%  Similarity=0.502  Sum_probs=32.4

Q ss_pred             CcEEEEecCC--CCCcccc----C--CCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG--LPLQRYA----E--GNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~--~~~~~~~----~--~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      +++.|.+.++  ++.+.+.    .  ...|.|.+++.+|+|.|.|...+..+
T Consensus        24 ~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~   75 (86)
T smart00410       24 PEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSG   75 (86)
T ss_pred             CeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCC
Confidence            4789999734  5422222    2  26899999999999999999986554

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>smart00409 IG Immunoglobulin

Probab=93.61  E-value=0.13  Score=42.19  Aligned_cols=44  Identities=25%  Similarity=0.502  Sum_probs=32.4

Q ss_pred             CcEEEEecCC--CCCcccc----C--CCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG--LPLQRYA----E--GNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~--~~~~~~~----~--~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      +++.|.+.++  ++.+.+.    .  ...|.|.+++.+|+|.|.|...+..+
T Consensus        24 ~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~   75 (86)
T smart00409       24 PEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSG   75 (86)
T ss_pred             CeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCC
Confidence            4789999734  5422222    2  26899999999999999999986554

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=93.60  E-value=0.019  Score=46.20  Aligned_cols=24  Identities=29%  Similarity=0.574  Sum_probs=21.9

Q ss_pred             CCCeEEEcccCCCCCeeEEEEEcC
Q psy9228          19 EGNVLRITNARLQDSGKYKCEIQG   42 (834)
Q Consensus        19 ~~~~l~~~~~~~~d~g~y~c~~~~   42 (834)
                      .+..|.|.+|..+|.|.|.|.++|
T Consensus        52 ~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen   52 SNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             EEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             eeeEEEEccCCHHhCcEEEEEEEC
Confidence            478999999999999999999965

...

>KOG4222|consensus

Probab=93.56  E-value=0.087  Score=62.38  Aligned_cols=44  Identities=25%  Similarity=0.474  Sum_probs=34.7

Q ss_pred             CcEEEEecCC-CC-----CccccCCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LP-----LQRYAEGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~-----~~~~~~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      +++.|.|++- |-     .-+-+.++.|.|.||+++|+|+|.|.++|.-+
T Consensus       162 ptvSw~Kdg~pl~~~~~~~~~lisgG~LlIsnvrksD~GtY~CVatNmvG  211 (1281)
T KOG4222|consen  162 PTVSWVKDGKPLDHYDVPIIALISGGNLLISNVRKSDEGTYACVATNMVG  211 (1281)
T ss_pred             CcceeecCCCccccccceeEEEecCCcEEEeccccCCCceeeeeeccccc
Confidence            4799999544 43     11223799999999999999999999998854

>smart00051 DSL delta serrate ligand

Probab=93.49  E-value=0.11  Score=40.30  Aligned_cols=48  Identities=25%  Similarity=0.505  Sum_probs=34.2

Q ss_pred             ceeeecCCCCCCCCCccCccCCCCCCccCCCceeeecCCCcEEcCCCCCCCCCc
Q psy9228         591 GYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDSYECLCSLGYAPPNC  644 (834)
Q Consensus       591 ~~~C~C~~G~~G~~Ce~~~~~C~~~~pC~ngg~C~~~~~~~~C~C~~g~~G~~C  644 (834)
                      .+.-.|+++|.|..|+.   .|...+-+..+.+|..   .-.|.|.+||+|+.|
T Consensus        16 ~~rv~C~~~~yG~~C~~---~C~~~~d~~~~~~Cd~---~G~~~C~~Gw~G~~C   63 (63)
T smart00051       16 QIRVTCDENYYGEGCNK---FCRPRDDFFGHYTCDE---NGNKGCLEGWMGPYC   63 (63)
T ss_pred             EEEeeCCCCCcCCccCC---EeCcCccccCCccCCc---CCCEecCCCCcCCCC
Confidence            56667999999999974   4543223556677732   345789999999987

>PHA02633 hypothetical protein; Provisional

Probab=93.48  E-value=0.079  Score=40.05  Aligned_cols=25  Identities=32%  Similarity=0.462  Sum_probs=22.0

Q ss_pred             CCCeEEEcccCCCCCeeEEEEEcCC
Q psy9228          19 EGNVLRITNARLQDSGKYKCEIQGH   43 (834)
Q Consensus        19 ~~~~l~~~~~~~~d~g~y~c~~~~~   43 (834)
                      .+..|+|-++..+|+|+|.|+..+.
T Consensus        16 ~~~nLwilpa~~sDSGiYiC~~rn~   40 (63)
T PHA02633         16 NCNNMLILNPTQSDSGIYMCITKNE   40 (63)
T ss_pred             ccccEEEeccccccCcEEEEEEcCC
Confidence            4678999999999999999999644

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=93.33  E-value=0.11  Score=46.16  Aligned_cols=27  Identities=19%  Similarity=0.530  Sum_probs=23.8

Q ss_pred             CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228          19 EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus        19 ~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .+..|.|.||+.+|+|+|.|...+...
T Consensus        78 ~daSI~I~nv~~sD~G~Y~C~v~n~p~  104 (116)
T cd05879          78 KDGSIVIHNLDYTDNGTFTCDVKNPPD  104 (116)
T ss_pred             CeeEEEEccCCcccCEEEEEEEEcCCC
Confidence            356899999999999999999987754

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function

Probab=93.06  E-value=0.11  Score=50.63  Aligned_cols=108  Identities=13%  Similarity=0.075  Sum_probs=60.3

Q ss_pred             CcceEEEEEEe-C-CCCeeEEecCCCCCCCCCCcceEEEEEECCEEEEEEEcCCcEEE------E-EeCCceecCCCcEE
Q psy9228         674 NEETIAFDFVT-D-DKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVT------I-KFSKKPVNDGIKHS  744 (834)
Q Consensus       674 ~~~~i~~~frT-~-~~~GlLl~~~~~~~~~~~~~~~~~l~l~~G~l~~~~~~g~~~~~------l-~~s~~~~nDg~wH~  744 (834)
                      ..+.|+++||. . ...|++|....... .........+.|.++.-........+...      . ......+..|+||+
T Consensus        53 ~df~l~~d~k~~~~~~sGi~~r~~~~~~-~~~~~~gy~~~i~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~W~~  131 (185)
T PF06439_consen   53 SDFELEVDFKITPGGNSGIFFRAQSPGD-GQDWNNGYEFQIDNSGGGTGLPNSTGSLYDEPPWQLEPSVNVAIPPGEWNT  131 (185)
T ss_dssp             SSEEEEEEEEE-TT-EEEEEEEESSECC-SSGGGTSEEEEEE-TTTCSTTTTSTTSBTTTB-TCB-SSS--S--TTSEEE
T ss_pred             ccEEEEEEEEECCCCCeEEEEEeccccC-CCCcceEEEEEEECCCCccCCCCccceEEEeccccccccccccCCCCceEE
Confidence            67888888884 3 34566666651111 12234567777775432211111122221      1 11345688999999


Q ss_pred             EEEEEECCEEEEEEcCeeeecccCCCCcccee--cCCceEEc
Q psy9228         745 VNVTRINKFGSLEVDSVIVGKGESPGSQDVIN--TRGNIYLG  784 (834)
Q Consensus       745 V~i~r~~~~~~l~VD~~~~~~~~~~~~~~~l~--~~~~lyiG  784 (834)
                      ++|...+.++++.|||..+.....+...  ..  ..+.|-|-
T Consensus       132 ~~I~~~g~~i~v~vnG~~v~~~~d~~~~--~~~~~~G~Igl~  171 (185)
T PF06439_consen  132 VRIVVKGNRITVWVNGKPVADFTDPSFP--YSNPTKGPIGLQ  171 (185)
T ss_dssp             EEEEEETTEEEEEETTEEEEEEETTSHH--HHHHSSBEEEEE
T ss_pred             EEEEEECCEEEEEECCEEEEEEEcCCCC--CCCCCceEEEEE
Confidence            9999999999999999988765443221  11  45566554

; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.

>KOG1836|consensus

Probab=93.00  E-value=0.13  Score=65.38  Aligned_cols=128  Identities=16%  Similarity=0.053  Sum_probs=84.9

Q ss_pred             CcceEEEEEEeCCCCeeEEecCCCCCCCCCCcceEEEEEECCEEEEEEEcCCc--EEEEEeCCceecCCCcEEEEEEEEC
Q psy9228         674 NEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDG--VVTIKFSKKPVNDGIKHSVNVTRIN  751 (834)
Q Consensus       674 ~~~~i~~~frT~~~~GlLl~~~~~~~~~~~~~~~~~l~l~~G~l~~~~~~g~~--~~~l~~s~~~~nDg~wH~V~i~r~~  751 (834)
                      ..+.+.+..+-.+..|.|-......      ..+..+....+.....+..|-.  ...+. ...++-++.||+|..++..
T Consensus      1556 ~~~~~~~~~~~~~~~~~l~~~~s~~------~~~~~~~~~~~~~~~~~~~gi~~~~~s~~-~~~~~~~~~~~~~~~~~~~ 1628 (1705)
T KOG1836|consen 1556 PAFALVFSERNVSSTGGLTHHLSKL------GTELLVQENPIGVTEKFESGITDLSTSST-PIVSLLPGGCHSVTSSTDP 1628 (1705)
T ss_pred             hhHHhhhcccccccCCCcccccccc------chHHhhhhcccccchhhhhhhhhhhhcch-hhhhhcCCcceeeeeecCC
Confidence            4455666666666555555443322      3466666667776666554432  22333 4567889999999999999


Q ss_pred             CEEEEEEcCeeeecccCCCCccceecCCceEEcCcCCCCCCCCCccCCCceEEEEEEEECCce
Q psy9228         752 KFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNIHIQNKH  814 (834)
Q Consensus       752 ~~~~l~VD~~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~~~~~~~~~~~F~GCi~~v~in~~~  814 (834)
                      ..+.+.+|...+. .   ......+...++++||+|......-.....+|.|||  +.+++.+
T Consensus      1629 ~v~~~~~~~~~~~-~---~~~~~~~~~~p~~~~~~~~s~~~~~~~~~~~~~~~~--~~~~~~~ 1685 (1705)
T KOG1836|consen 1629 GVVQLEDDTYTVG-E---IPPPPADTQEPIKLGGYPSSLTTLRIAVLKSFTGCI--FVVMGIR 1685 (1705)
T ss_pred             ccccccccceecc-c---CCCCchhccCCcccCCccccccceeeecccccccce--EEecCCC
Confidence            9999999983222 2   222345677899999999874333345678899999  7777765

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=92.70  E-value=0.12  Score=51.47  Aligned_cols=43  Identities=26%  Similarity=0.465  Sum_probs=35.4

Q ss_pred             CCcEEEEecCC--CCCcccc---CCCeEEEcccCCCCCeeEEEEEcCC
Q psy9228           1 NAYIKWSRADG--LPLQRYA---EGNVLRITNARLQDSGKYKCEIQGH   43 (834)
Q Consensus         1 ~~~~~w~~~~~--~~~~~~~---~~~~l~~~~~~~~d~g~y~c~~~~~   43 (834)
                      +.++.|...+|  |+.+.++   ..|.|.|.+++++|+|.|+|+-++.
T Consensus        12 DP~y~W~GP~g~~l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk   59 (271)
T PF07354_consen   12 DPTYLWTGPNGKPLSGNSYVNITETGKLMFKNFQESMSGSYTCTLSYK   59 (271)
T ss_pred             CCceEEECCCCcccCCCCeEEEccCceEEeeccccccCCceEEEEEEE
Confidence            46899999888  6555444   5789999999999999999999654

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=92.62  E-value=0.07  Score=43.55  Aligned_cols=39  Identities=26%  Similarity=0.526  Sum_probs=29.8

Q ss_pred             CcEEEEecCC-CCCccccCCCeEEEcccCCCCCeeEEEEEcCCC
Q psy9228           2 AYIKWSRADG-LPLQRYAEGNVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~~~~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      .++.|.|.+. |+...    +.|.+.++..+|+|.|.|.+.+..
T Consensus        29 ~~~~w~~~~~~~~~~~----~~~~~~~~~~~~~g~y~C~~~~~~   68 (80)
T PF13895_consen   29 PQVQWYKNGSPINSSQ----NGLFIPNVSPEDSGNYTCRASNGS   68 (80)
T ss_dssp             SEEEEEETTEEEEEES----SEEEESSEEGGGTEEEEEEEEETT
T ss_pred             eeeeeeeeeeeeeeee----eeeeeeeeccccCEEEEEEEEeCC
Confidence            4789999555 65222    228889999999999999997654

...

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=92.60  E-value=0.21  Score=42.85  Aligned_cols=25  Identities=24%  Similarity=0.328  Sum_probs=22.7

Q ss_pred             CeEEEcccCCCC-CeeEEEEEcCCCC
Q psy9228          21 NVLRITNARLQD-SGKYKCEIQGHDS   45 (834)
Q Consensus        21 ~~l~~~~~~~~d-~g~y~c~~~~~~~   45 (834)
                      ..|+|.+++.+| .|.|.|.+.|.+|
T Consensus        64 S~L~I~~~~~~d~~g~Y~C~a~N~~G   89 (98)
T cd05898          64 STLTINNIMEADFQTHYNCTAWNSFG   89 (98)
T ss_pred             EEEEECCCccccCCcEEEEEEEeCCc
Confidence            589999998877 7999999999987

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>KOG1836|consensus

Probab=92.49  E-value=0.18  Score=64.14  Aligned_cols=116  Identities=15%  Similarity=0.090  Sum_probs=67.0

Q ss_pred             CcceEEEEEECCEEEEEEEcCCcEEEEEeCCceecCCCcEEEEEEEECCEEEEEEcCeeeecccCCCCccceecCCceEE
Q psy9228         704 GREFIAVAVVNGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYL  783 (834)
Q Consensus       704 ~~~~~~l~l~~G~l~~~~~~g~~~~~l~~s~~~~nDg~wH~V~i~r~~~~~~l~VD~~~~~~~~~~~~~~~l~~~~~lyi  783 (834)
                      -.+|+.+....+++.........+..+. +...+     |.|.....+..-.|.+|.......  ++ ........++|.
T Consensus      1413 ~~~~~~~~~~~~~~~g~~~~~~~~~k~~-a~e~~-----~~~~~~~~~~~~~l~~~~~~~~~~--~~-~~~~~~~~~~~~ 1483 (1705)
T KOG1836|consen 1413 CEDFGGLQLCAGRLLGRACERCAEGKYG-APEAL-----HEVACGAERSAGRLVRDCNCPSSY--EG-NLCWECQAPNYL 1483 (1705)
T ss_pred             hhhhhhhhhhhhhhhcchhhhhhhhhcc-Ccccc-----eeeecccccccccccccccCCCCc--cc-cccccccccccc
Confidence            3688888888888877665444333232 22223     777777777777777777632221  11 122334456777


Q ss_pred             cCcCCCCCCC--CCccCCCceEEEEEEEECCceecccCCCCCCCccccccc
Q psy9228         784 GGTPNMDLMT--GGRYVHPMSGLMMNIHIQNKHISNIGSSASSGLHVMPWI  832 (834)
Q Consensus       784 GG~p~~~~~~--~~~~~~~F~GCi~~v~in~~~~~~l~~~a~~~~nv~~c~  832 (834)
                      |+........  .......|.||+.+..++...   +.. ...++.+..|+
T Consensus      1484 ~~~~~G~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~-~~~~~~~~~c~ 1530 (1705)
T KOG1836|consen 1484 GGPVEGCDECKCQEPDIQSFTGCLCDTQLGQAK---CRS-KSAGRSCDKCL 1530 (1705)
T ss_pred             cCCCCCchhhccccCCcccccccccchhccccc---ccc-cccCceecccc
Confidence            7765543221  223456788888888886652   222 23666666665

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=92.45  E-value=0.11  Score=44.64  Aligned_cols=24  Identities=25%  Similarity=0.595  Sum_probs=22.0

Q ss_pred             CCeEEEcccCCCCCeeEEEEEcCC
Q psy9228          20 GNVLRITNARLQDSGKYKCEIQGH   43 (834)
Q Consensus        20 ~~~l~~~~~~~~d~g~y~c~~~~~   43 (834)
                      +..|.|.||+.+|+|+|.|...+-
T Consensus        62 daSi~i~nl~~~D~G~Y~C~v~t~   85 (99)
T cd05886          62 DGTISLSRLELEDEGVYICEFATF   85 (99)
T ss_pred             cceEEEcCCccccCEEEEEEEEeC
Confidence            579999999999999999999873

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=92.19  E-value=0.13  Score=44.49  Aligned_cols=23  Identities=39%  Similarity=0.651  Sum_probs=21.0

Q ss_pred             CCeEEEcccCCCCCeeEEEEEcC
Q psy9228          20 GNVLRITNARLQDSGKYKCEIQG   42 (834)
Q Consensus        20 ~~~l~~~~~~~~d~g~y~c~~~~   42 (834)
                      +..|+|.||+.+|+|+|.|...+
T Consensus        63 ~~sL~I~nv~~sD~GtY~C~v~~   85 (100)
T cd05888          63 DGALILRNAVQADEGKYKCRVIT   85 (100)
T ss_pred             ceEEEEecCccccceEEEEEEEe
Confidence            56899999999999999999864

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=92.05  E-value=0.11  Score=45.34  Aligned_cols=25  Identities=44%  Similarity=0.755  Sum_probs=22.5

Q ss_pred             CCeEEEcccCCCCCeeEEEEEcCCC
Q psy9228          20 GNVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus        20 ~~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      +..|+|.+|+.+|+|+|.|...++.
T Consensus        67 ~~sL~I~~v~~sD~G~Y~C~v~~~~   91 (106)
T cd05714          67 DASLVITDLRLEDSGRYRCEVIDGI   91 (106)
T ss_pred             cceEEECCCCHHHCEEEEEEEEcCC
Confidence            5789999999999999999998654

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=92.02  E-value=0.14  Score=43.34  Aligned_cols=26  Identities=31%  Similarity=0.427  Sum_probs=22.7

Q ss_pred             CCCeEEEcccCCCCCeeEEEEEcCCC
Q psy9228          19 EGNVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus        19 ~~~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      .++.|+|.+++.+|+|.|.|......
T Consensus        55 ~~~sL~I~~l~~~DsG~Y~c~v~~~~   80 (92)
T cd05741          55 PNGSLLIQNLTKEDSGTYTLQIISTN   80 (92)
T ss_pred             CCceEEEccCCchhcEEEEEEEEcCC
Confidence            46899999999999999999996543

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>PF12662 cEGF: Complement Clr-like EGF-like

Probab=91.78  E-value=0.13  Score=31.10  Aligned_cols=17  Identities=41%  Similarity=1.107  Sum_probs=13.9

Q ss_pred             CeEEeCCCCcc----cCcccc
Q psy9228         197 AMKCLCPIGTA----GKRCEQ  213 (834)
Q Consensus       197 ~~~C~C~~g~~----G~~Ce~  213 (834)
                      +|+|.|++||.    |..|+.
T Consensus         1 sy~C~C~~Gy~l~~d~~~C~D   21 (24)
T PF12662_consen    1 SYTCSCPPGYQLSPDGRSCED   21 (24)
T ss_pred             CEEeeCCCCCcCCCCCCcccc
Confidence            69999999997    667753

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=91.78  E-value=0.28  Score=40.51  Aligned_cols=43  Identities=23%  Similarity=0.409  Sum_probs=30.9

Q ss_pred             CcEEEEecCC-CCCcccc----CC-------CeEEEcccCCCCCeeEEEEEcCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA----EG-------NVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~----~~-------~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      ++|+|.|.+. |......    .+       ..|.|...+.+|.|.|.|.+.+..
T Consensus        15 ~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~   69 (82)
T cd05759          15 AEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEA   69 (82)
T ss_pred             CEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCcc
Confidence            4899999555 7654321    12       267788888889999999997653

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>KOG0994|consensus

Probab=91.78  E-value=0.37  Score=56.88  Aligned_cols=53  Identities=38%  Similarity=0.918  Sum_probs=31.9

Q ss_pred             ceEeeCCCCCCCCCCCC-------C-CCCccCCCCC-CC----eeecCCCCeEEeCCCCcccCccccc
Q psy9228         160 GYTCICPPGFSGDRCSV-------L-GEPCYPGACG-DG----SCQDVDGAMKCLCPIGTAGKRCEQK  214 (834)
Q Consensus       160 ~~~C~C~~g~~G~~Ce~-------~-~~~C~~~~C~-~g----~C~~~~~~~~C~C~~g~~G~~Ce~~  214 (834)
                      .-.|.|.|||.|..|.+       + .-.|..--|- .|    .|.  ...-.|.|.+|..|++|.+-
T Consensus      1083 tGQCqCkpGfGGR~C~qCqel~WGdP~~~C~aCdCd~rG~~tpQCd--r~tG~C~C~~Gv~G~rCdqC 1148 (1758)
T KOG0994|consen 1083 TGQCQCKPGFGGRTCSQCQELYWGDPNEKCRACDCDPRGIETPQCD--RATGRCVCRPGVGGPRCDQC 1148 (1758)
T ss_pred             ccceeccCCCCCcchhHHHHhhcCCCCCCceecCCCCCCCCCCCcc--ccCCceeecCCCCCcchhhh
Confidence            45799999999999853       1 1123222222 12    222  13346888888888888764

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=91.60  E-value=0.13  Score=44.40  Aligned_cols=25  Identities=40%  Similarity=0.595  Sum_probs=21.9

Q ss_pred             CeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228          21 NVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus        21 ~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ..|+|.+|+.+|+|+|.|...+..+
T Consensus        65 ~sL~I~~v~~~D~G~Y~C~v~~~~~   89 (100)
T cd05713          65 VALRIHNVRASDEGLYTCFFQSDGF   89 (100)
T ss_pred             EEEEEEcCChhhCEEEEEEEecCCc
Confidence            4799999999999999999976543

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium

Probab=91.36  E-value=0.2  Score=47.00  Aligned_cols=63  Identities=27%  Similarity=0.654  Sum_probs=42.2

Q ss_pred             CCCCCCCCEeccCCC---CCceEeeCCCCCCCC--CCCCCCCCccCCCCCCCeeecCC---CCeEEeCCCCcc
Q psy9228         143 HNNCINNGLCQDAAT---RIGYTCICPPGFSGD--RCSVLGEPCYPGACGDGSCQDVD---GAMKCLCPIGTA  207 (834)
Q Consensus       143 ~~pC~n~g~C~~~~~---~~~~~C~C~~g~~G~--~Ce~~~~~C~~~~C~~g~C~~~~---~~~~C~C~~g~~  207 (834)
                      ..||.+.++|.+...   ...|+|.|.+||.=.  .|  ..+.|...-|.+|.|+-.+   ....|.|.-|+.
T Consensus        49 ~K~Cgdya~C~~~~~~~~~~~~~C~C~~gY~~~~~vC--vp~~C~~~~Cg~GKCI~d~~~~~~~~CSC~IGkV  119 (197)
T PF06247_consen   49 NKPCGDYAKCINQANKGEERAYKCDCINGYILKQGVC--VPNKCNNKDCGSGKCILDPDNPNNPTCSCNIGKV  119 (197)
T ss_dssp             TSEEETTEEEEE-SSTTSSTSEEEEE-TTEEESSSSE--EEGGGSS---TTEEEEEEEGGGSEEEEEE-TEEE
T ss_pred             CccccchhhhhcCCCcccceeEEEecccCceeeCCeE--chhhcCceecCCCeEEecCCCCCCceeEeeeceE
Confidence            688999999997653   467999999999732  34  2345666677778998443   566999999976

Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.

>cd00096 Ig Immunoglobulin domain

Probab=91.36  E-value=0.3  Score=37.82  Aligned_cols=43  Identities=30%  Similarity=0.563  Sum_probs=32.0

Q ss_pred             CcEEEEecCC-CCCcc----------ccCCCeEEEcccCCCCCeeEEEEEcCCC
Q psy9228           2 AYIKWSRADG-LPLQR----------YAEGNVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~----------~~~~~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      ..+.|.|.+. .....          ......|.|++++.+|+|.|.|...+..
T Consensus        13 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096          13 PTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             CcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            4789998665 44332          1135689999999999999999997543

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>smart00051 DSL delta serrate ligand

Probab=91.28  E-value=0.25  Score=38.30  Aligned_cols=45  Identities=22%  Similarity=0.488  Sum_probs=32.1

Q ss_pred             eEeeCCCCCCCCCCCCCCCCccC-CCCCC-CeeecCCCCeEEeCCCCcccCcc
Q psy9228         161 YTCICPPGFSGDRCSVLGEPCYP-GACGD-GSCQDVDGAMKCLCPIGTAGKRC  211 (834)
Q Consensus       161 ~~C~C~~g~~G~~Ce~~~~~C~~-~~C~~-g~C~~~~~~~~C~C~~g~~G~~C  211 (834)
                      |.=.|+++|.|..|+.   .|.+ +.+.+ .+|..   .-.|.|++||+|+.|
T Consensus        17 ~rv~C~~~~yG~~C~~---~C~~~~d~~~~~~Cd~---~G~~~C~~Gw~G~~C   63 (63)
T smart00051       17 IRVTCDENYYGEGCNK---FCRPRDDFFGHYTCDE---NGNKGCLEGWMGPYC   63 (63)
T ss_pred             EEeeCCCCCcCCccCC---EeCcCccccCCccCCc---CCCEecCCCCcCCCC
Confidence            4456999999999965   5654 23443 47743   245889999999987

>KOG4221|consensus

Probab=91.20  E-value=0.23  Score=59.39  Aligned_cols=42  Identities=31%  Similarity=0.671  Sum_probs=38.3

Q ss_pred             cEEEEecCC-CCCcccc---CCCeEEEcccCCCCCeeEEEEEcCCC
Q psy9228           3 YIKWSRADG-LPLQRYA---EGNVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus         3 ~~~w~~~~~-~~~~~~~---~~~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      +|+|.|.+. ||.+.+.   .++.|.|.+++++|.|.|.|.++++-
T Consensus       171 ~i~w~kn~~pl~~~~r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~  216 (1381)
T KOG4221|consen  171 TIMWLKNDQPLPLDSRVIVLPSGALEISGLQPSDTGEYRCVVTGGA  216 (1381)
T ss_pred             eeEEecccccccCCCcEEEcCCCcEEecccccCCCceEEEEEecCC
Confidence            699999998 9998777   58999999999999999999999874

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=91.15  E-value=0.18  Score=42.99  Aligned_cols=22  Identities=23%  Similarity=0.495  Sum_probs=20.6

Q ss_pred             CCeEEEcccCCCCCeeEEEEEc
Q psy9228          20 GNVLRITNARLQDSGKYKCEIQ   41 (834)
Q Consensus        20 ~~~l~~~~~~~~d~g~y~c~~~   41 (834)
                      +..|+|+||+.+|+|.|.|...
T Consensus        59 d~sl~i~nv~~~D~G~Y~C~v~   80 (96)
T cd05887          59 DATIMLENVGFSDIGVYICKAV   80 (96)
T ss_pred             ccEEEEeCCCccccEEEEEEEE
Confidence            7799999999999999999975

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>KOG4194|consensus

Probab=91.10  E-value=0.35  Score=53.64  Aligned_cols=62  Identities=23%  Similarity=0.471  Sum_probs=44.5

Q ss_pred             CCcEEEEecCC-CCCcccc-------------------CCCeEEEcccCCCCCeeEEEEEcCCCCccCCcEEEEcCceeE
Q psy9228           1 NAYIKWSRADG-LPLQRYA-------------------EGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNVERMM   60 (834)
Q Consensus         1 ~~~~~w~~~~~-~~~~~~~-------------------~~~~l~~~~~~~~d~g~y~c~~~~~~~~~~~~~~~~~~~g~~   60 (834)
                      +.+|.|||+.. +|.-.-.                   .-+.|+|.||.-.|+|.|.|.++|..|   .+|-   .+..+
T Consensus       534 plsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt~td~grYQCVvtN~FG---Stys---qk~Kl  607 (873)
T KOG4194|consen  534 PLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNVTFTDEGRYQCVVTNHFG---STYS---QKAKL  607 (873)
T ss_pred             CceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeeeecccCceEEEEEecccC---cchh---heeEE
Confidence            35899999777 7653221                   025899999999999999999998876   3332   55666


Q ss_pred             EEcCCcce
Q psy9228          61 FVDGIGPF   68 (834)
Q Consensus        61 cvd~~~~~   68 (834)
                      .|+..+.|
T Consensus       608 tV~~~PsF  615 (873)
T KOG4194|consen  608 TVNQAPSF  615 (873)
T ss_pred             EeeccCcc
Confidence            66666555

>KOG1226|consensus

Probab=91.09  E-value=0.29  Score=55.86  Aligned_cols=61  Identities=28%  Similarity=0.683  Sum_probs=48.6

Q ss_pred             CCCCCCCEeccCCCCCceEeeCCCCCC----CCCCCCCCCCccCC---CCC-CCeeecCCCCeEEeCCCCcccCccccc
Q psy9228         144 NNCINNGLCQDAATRIGYTCICPPGFS----GDRCSVLGEPCYPG---ACG-DGSCQDVDGAMKCLCPIGTAGKRCEQK  214 (834)
Q Consensus       144 ~pC~n~g~C~~~~~~~~~~C~C~~g~~----G~~Ce~~~~~C~~~---~C~-~g~C~~~~~~~~C~C~~g~~G~~Ce~~  214 (834)
                      -+|.+.|.|.-.      .|.|.+...    |++||-+--.|..+   -|. +|.|.-.    .|.|.+||+|..|+-.
T Consensus       514 ~vCSgrG~C~CG------qC~C~~~~~~~i~G~fCECDnfsC~r~~g~lC~g~G~C~CG----~CvC~~GwtG~~C~C~  582 (783)
T KOG1226|consen  514 PVCSGRGDCVCG------QCVCHKPDNGKIYGKFCECDNFSCERHKGVLCGGHGRCECG----RCVCNPGWTGSACNCP  582 (783)
T ss_pred             CCcCCCCcEeCC------ceEecCCCCCceeeeeeeccCcccccccCcccCCCCeEeCC----cEEcCCCCccCCCCCC
Confidence            489999999974      599986655    99998777777664   576 5887754    6999999999999865

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=91.08  E-value=0.2  Score=44.54  Aligned_cols=27  Identities=19%  Similarity=0.443  Sum_probs=23.1

Q ss_pred             CCeEEEcccCCCCCeeEEEEEcCCCCc
Q psy9228          20 GNVLRITNARLQDSGKYKCEIQGHDSF   46 (834)
Q Consensus        20 ~~~l~~~~~~~~d~g~y~c~~~~~~~~   46 (834)
                      +..|+|.+|+.+|+|+|.|...+....
T Consensus        78 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~  104 (115)
T cd05880          78 DASILIWQLQPTDNGTYTCQVKNPPDV  104 (115)
T ss_pred             ceEEEEeeCChhhCEEEEEEEEeCCCC
Confidence            346999999999999999999876543

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A

Probab=90.90  E-value=0.18  Score=34.07  Aligned_cols=18  Identities=33%  Similarity=0.927  Sum_probs=10.5

Q ss_pred             eeecCCCCeEEeCCCCcc
Q psy9228         190 SCQDVDGAMKCLCPIGTA  207 (834)
Q Consensus       190 ~C~~~~~~~~C~C~~g~~  207 (834)
                      .|++..++|+|.|++||.
T Consensus        11 ~C~~~~g~~~C~C~~Gy~   28 (36)
T PF14670_consen   11 ICVNTPGSYRCSCPPGYK   28 (36)
T ss_dssp             EEEEETTSEEEE-STTEE
T ss_pred             CCccCCCceEeECCCCCE
Confidence            466666666666666654

...

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=90.81  E-value=0.21  Score=42.59  Aligned_cols=24  Identities=29%  Similarity=0.607  Sum_probs=21.0

Q ss_pred             CCeEEEcccCCCCCeeEEEEEcCC
Q psy9228          20 GNVLRITNARLQDSGKYKCEIQGH   43 (834)
Q Consensus        20 ~~~l~~~~~~~~d~g~y~c~~~~~   43 (834)
                      ...|+|.+|+.+|+|.|.|.+...
T Consensus        61 ~~~L~I~~v~~~DsG~Y~C~~~~~   84 (95)
T cd05717          61 ELSISISNVSLSDEGRYTCSLYTM   84 (95)
T ss_pred             eeEEEEccCCcccCEEEEEEEecC
Confidence            357999999999999999999644

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=90.75  E-value=0.17  Score=43.09  Aligned_cols=22  Identities=27%  Similarity=0.668  Sum_probs=19.8

Q ss_pred             eEEEcccCCCCCeeEEEEEcCC
Q psy9228          22 VLRITNARLQDSGKYKCEIQGH   43 (834)
Q Consensus        22 ~l~~~~~~~~d~g~y~c~~~~~   43 (834)
                      .|+|.+|+.+|+|.|.|.+...
T Consensus        63 tL~I~~vq~~D~G~Y~Cqv~t~   84 (95)
T cd05881          63 RVSLSNVSLSDEGRYFCQLYTD   84 (95)
T ss_pred             EEEECcCCcccCEEEEEEEEcc
Confidence            6999999999999999999643

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=90.34  E-value=0.22  Score=42.81  Aligned_cols=25  Identities=32%  Similarity=0.694  Sum_probs=22.1

Q ss_pred             CCeEEEcccCCCCCeeEEEEEcCCC
Q psy9228          20 GNVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus        20 ~~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      +..|+|.+++.+|+|+|.|......
T Consensus        60 ~~sL~I~~~~~~DsG~Y~c~v~~~~   84 (97)
T cd05775          60 DYSLQISNLKMEDAGSYRAEINTKN   84 (97)
T ss_pred             ceeEEECCCchHHCEEEEEEEEcCC
Confidence            4789999999999999999997554

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=90.22  E-value=0.26  Score=42.08  Aligned_cols=23  Identities=30%  Similarity=0.468  Sum_probs=21.0

Q ss_pred             CCeEEEcccCCCCCeeEEEEEcC
Q psy9228          20 GNVLRITNARLQDSGKYKCEIQG   42 (834)
Q Consensus        20 ~~~l~~~~~~~~d~g~y~c~~~~   42 (834)
                      +..|+|.||+.+|+|.|+|....
T Consensus        59 d~sI~i~nvt~~D~G~Y~C~~~t   81 (96)
T cd05889          59 DMSLSFNNATEEDVGLYCCSLVT   81 (96)
T ss_pred             ccEEEEcCCCcccCEEEEEEEEe
Confidence            58999999999999999999853

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=89.94  E-value=0.21  Score=43.62  Aligned_cols=26  Identities=38%  Similarity=0.673  Sum_probs=22.3

Q ss_pred             CCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228          20 GNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus        20 ~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      +..|+|.+|+.+|+|+|.|...++.+
T Consensus        67 ~~sL~I~~v~~~DsG~Y~C~v~~~~~   92 (106)
T cd05877          67 DASLVITDLRLEDYGRYRCEVIDGLE   92 (106)
T ss_pred             cEEEEEccCChHHCEEEEEEEEeccc
Confidence            34899999999999999999976543

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=89.89  E-value=0.28  Score=42.07  Aligned_cols=22  Identities=41%  Similarity=0.830  Sum_probs=20.3

Q ss_pred             CCeEEEcccCCCCCeeEEEEEc
Q psy9228          20 GNVLRITNARLQDSGKYKCEIQ   41 (834)
Q Consensus        20 ~~~l~~~~~~~~d~g~y~c~~~   41 (834)
                      +..|+|.+|+.+|+|.|.|...
T Consensus        61 ~~sL~I~~v~~~D~G~Y~C~v~   82 (98)
T cd05718          61 DATISISNLRLEDEGNYICEFA   82 (98)
T ss_pred             ceEEEEccCCcccCEEEEEEEE
Confidence            4699999999999999999985

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=89.78  E-value=0.27  Score=43.80  Aligned_cols=25  Identities=24%  Similarity=0.632  Sum_probs=22.1

Q ss_pred             CeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228          21 NVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus        21 ~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ..|+|.+|+.+|+|+|.|...+...
T Consensus        80 ~sL~I~~v~~~D~G~Y~C~v~~~~~  104 (116)
T cd05715          80 ASIVIHNLQFTDNGTYTCDVKNPPD  104 (116)
T ss_pred             eEEEEeeCCcccCEEEEEEEEeCCC
Confidence            5799999999999999999986643

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=89.78  E-value=0.27  Score=43.38  Aligned_cols=25  Identities=36%  Similarity=0.581  Sum_probs=21.8

Q ss_pred             CCeEEEcccCCCCCeeEEEEEcCCC
Q psy9228          20 GNVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus        20 ~~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      +..|+|.+|+.+|+|+|.|......
T Consensus        71 ~asL~I~~l~~sD~G~Y~C~v~~~~   95 (110)
T cd05878          71 DASLEISRLRSSDSGVYRCEVMHGI   95 (110)
T ss_pred             cEEEEECCCChhhCEEEEEEEEeCC
Confidence            3579999999999999999997554

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>KOG4222|consensus

Probab=89.58  E-value=0.42  Score=56.92  Aligned_cols=43  Identities=30%  Similarity=0.662  Sum_probs=37.6

Q ss_pred             CcEEEEecCC-CCCcccc---CCCeEEEcccCCCCCeeEEEEEcCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA---EGNVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~---~~~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      .+++|+|.++ ||+.++.   ++-.|+|.++++.|.|.|.|.+.+.-
T Consensus       255 P~Vrwkk~~~~~P~~ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~v  301 (1281)
T KOG4222|consen  255 PTVRWKKDDPSLPRSRYSILDDTQTLRIDRVTPTDEGTYVCPAENLV  301 (1281)
T ss_pred             CceeeeccCCCCCccceeeeeccccccccccCCCcccceeeeccccc
Confidence            4799999888 9998877   34799999999999999999998764

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=89.20  E-value=0.24  Score=43.05  Aligned_cols=24  Identities=25%  Similarity=0.397  Sum_probs=21.4

Q ss_pred             CeEEEcccCCCCCeeEEEEEcCCC
Q psy9228          21 NVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus        21 ~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      -.|+|.+|+.+|+|+|.|.+....
T Consensus        67 ~sL~I~~v~~~D~G~Y~C~v~~~~   90 (105)
T cd00099          67 FTLTISSLQPEDSAVYYCAVSLSG   90 (105)
T ss_pred             EEEEECCCCHHHCEEEEEEEecCC
Confidence            389999999999999999997654

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=88.74  E-value=0.23  Score=43.62  Aligned_cols=25  Identities=32%  Similarity=0.542  Sum_probs=22.0

Q ss_pred             CCeEEEcccCCCCCeeEEEEEcCCC
Q psy9228          20 GNVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus        20 ~~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      +..|+|.||+.+|+|+|.|....+.
T Consensus        71 ~asL~i~nv~~~D~G~Y~C~v~~g~   95 (110)
T cd05902          71 NASLVLSRLRYSDSGTYRCEVVLGI   95 (110)
T ss_pred             eEEEEECCCCHHHCEEEEEEEEECC
Confidence            4589999999999999999997654

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies

Probab=88.41  E-value=0.57  Score=34.45  Aligned_cols=16  Identities=38%  Similarity=0.935  Sum_probs=11.9

Q ss_pred             ceEeeCCCCCCCCCCC
Q psy9228         160 GYTCICPPGFSGDRCS  175 (834)
Q Consensus       160 ~~~C~C~~g~~G~~Ce  175 (834)
                      +-.|.|+++|+|.+|+
T Consensus        18 ~G~C~C~~~~~G~~C~   33 (50)
T cd00055          18 TGQCECKPNTTGRRCD   33 (50)
T ss_pred             CCEEeCCCcCCCCCCC
Confidence            3567788888888885

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=88.32  E-value=0.61  Score=39.70  Aligned_cols=39  Identities=10%  Similarity=0.145  Sum_probs=29.0

Q ss_pred             cEEEEecCC-CCCcc--c----cCCCeEEEcccCCCCCeeEEEEEc
Q psy9228           3 YIKWSRADG-LPLQR--Y----AEGNVLRITNARLQDSGKYKCEIQ   41 (834)
Q Consensus         3 ~~~w~~~~~-~~~~~--~----~~~~~l~~~~~~~~d~g~y~c~~~   41 (834)
                      .+.|.|++. .+...  .    .....+.|.+++.+|+|+|.|...
T Consensus        30 ~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~   75 (94)
T cd05711          30 RFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS   75 (94)
T ss_pred             EEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence            588999776 44322  1    123478999999999999999985

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=87.77  E-value=0.37  Score=41.35  Aligned_cols=23  Identities=35%  Similarity=0.602  Sum_probs=20.5

Q ss_pred             CCeEEEcccCCCCCeeEEEEEcC
Q psy9228          20 GNVLRITNARLQDSGKYKCEIQG   42 (834)
Q Consensus        20 ~~~l~~~~~~~~d~g~y~c~~~~   42 (834)
                      +..|+|.||+.+|+|.|.|....
T Consensus        60 ~~sL~I~nv~~~D~G~Y~C~~~~   82 (97)
T cd05846          60 STSITIWNVTLEDEGCYKCIFNT   82 (97)
T ss_pred             ccEEEEeCCceeeeEEEEEEEEe
Confidence            56799999999999999999863

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=87.64  E-value=0.4  Score=42.06  Aligned_cols=24  Identities=33%  Similarity=0.582  Sum_probs=21.2

Q ss_pred             CCeEEEcccCCCCCeeEEEEEcCC
Q psy9228          20 GNVLRITNARLQDSGKYKCEIQGH   43 (834)
Q Consensus        20 ~~~l~~~~~~~~d~g~y~c~~~~~   43 (834)
                      .-.|+|.+++.+|+|+|.|.+.+.
T Consensus        69 ~~~L~I~~~~~~DsG~Y~C~~~~~   92 (109)
T cd04983          69 SSSLHISAAQLSDSAVYFCALSES   92 (109)
T ss_pred             EEEEEECCCCHHHCEEEEEEEecC
Confidence            348999999999999999999754

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>smart00406 IGv Immunoglobulin V-Type

Probab=87.48  E-value=0.29  Score=39.98  Aligned_cols=19  Identities=42%  Similarity=0.824  Sum_probs=17.5

Q ss_pred             CeEEEcccCCCCCeeEEEE
Q psy9228          21 NVLRITNARLQDSGKYKCE   39 (834)
Q Consensus        21 ~~l~~~~~~~~d~g~y~c~   39 (834)
                      -.|+|.+++.+|+|+|.|.
T Consensus        62 ~~L~i~~~~~~D~G~Y~C~   80 (81)
T smart00406       62 VSLTISNLRVEDTGTYYCA   80 (81)
T ss_pred             EEEEEcCCCHHHCEEEEEc
Confidence            4699999999999999996

>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation

Probab=87.32  E-value=0.33  Score=35.54  Aligned_cols=17  Identities=41%  Similarity=1.071  Sum_probs=11.5

Q ss_pred             CceEeeCCCCCCCCCCC
Q psy9228         159 IGYTCICPPGFSGDRCS  175 (834)
Q Consensus       159 ~~~~C~C~~g~~G~~Ce  175 (834)
                      ....|.|+++|+|++|+
T Consensus        16 ~~G~C~C~~~~~G~~C~   32 (49)
T PF00053_consen   16 STGQCVCKPGTTGPRCD   32 (49)
T ss_dssp             TCEEESBSTTEESTTS-
T ss_pred             CCCEEeccccccCCcCc
Confidence            34677777777777775

They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=87.21  E-value=0.42  Score=44.18  Aligned_cols=24  Identities=21%  Similarity=0.513  Sum_probs=21.1

Q ss_pred             eEEEcccCCCCCeeEEEEEcCCCC
Q psy9228          22 VLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus        22 ~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .|+|++|+.+|+|.|.|.+.+..+
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~   25 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPH   25 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCc
Confidence            699999999999999999976543

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=86.19  E-value=0.61  Score=40.00  Aligned_cols=22  Identities=27%  Similarity=0.576  Sum_probs=19.7

Q ss_pred             CeEEEcccCCCCCeeEEEEEcC
Q psy9228          21 NVLRITNARLQDSGKYKCEIQG   42 (834)
Q Consensus        21 ~~l~~~~~~~~d~g~y~c~~~~   42 (834)
                      ..|+|.+++.+|+|+|.|...+
T Consensus        63 ~~L~I~~~~~~Dsg~Y~C~~~~   84 (98)
T cd04984          63 ASLTISGAQTEDEADYYCQVWD   84 (98)
T ss_pred             EEEEECCCChhhCEEEEEEEcc
Confidence            3699999999999999999864

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>KOG3546|consensus

Probab=85.81  E-value=2.1  Score=47.60  Aligned_cols=128  Identities=13%  Similarity=0.162  Sum_probs=81.3

Q ss_pred             CcceEEEEEEeCC-CCeeEEecCCCCCCCCCCcceEEEEE---ECCEEEEEEEc---CCcEE-EEEeCCceecCCCcEEE
Q psy9228         674 NEETIAFDFVTDD-KNALLLWNGQPSYKNGIGREFIAVAV---VNGYLEYSYDL---GDGVV-TIKFSKKPVNDGIKHSV  745 (834)
Q Consensus       674 ~~~~i~~~frT~~-~~GlLl~~~~~~~~~~~~~~~~~l~l---~~G~l~~~~~~---g~~~~-~l~~s~~~~nDg~wH~V  745 (834)
                      ..+.|.|.+|..+ .-|+||.+.+..    +..-|+.|.|   +||+-.+++..   |++.. +.......+-.++|.++
T Consensus        87 rdf~~~~~i~p~s~~~gvlfaitd~~----q~~i~lg~~lsgv~dghq~i~l~ytepg~~~s~~aa~f~~p~~~~~w~~~  162 (1167)
T KOG3546|consen   87 RDFSLLFHIRPATEGPGVLFAITDSA----QAMVLLGVKLSGVQDGHQDISLLYTEPGAGQTHTAASFRLPAFVGQWTHL  162 (1167)
T ss_pred             ccceEEEEeeccCCCCceEEEechhh----hhhheeeeeeeccccCcceeEEEeccCCCCccchhheeccchhhchhhhe
Confidence            5678888888866 456777665432    2345666655   37765554332   33322 11112345678999999


Q ss_pred             EEEEECCEEEEEEcCeeeecccCCCCccc--eecCCceEEcCcCCCCCCCCCccCCCceEEEEEEEECC
Q psy9228         746 NVTRINKFGSLEVDSVIVGKGESPGSQDV--INTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNIHIQN  812 (834)
Q Consensus       746 ~i~r~~~~~~l~VD~~~~~~~~~~~~~~~--l~~~~~lyiGG~p~~~~~~~~~~~~~F~GCi~~v~in~  812 (834)
                      .+...+..+.|+||=++.+..-..-+++.  +....-||+|-+-..       ..+.|.|-|..|++.-
T Consensus       163 a~~v~g~~v~l~v~cee~~r~p~~rss~~l~~e~~ag~f~~~ag~~-------~~~~f~g~~~~l~v~~  224 (1167)
T KOG3546|consen  163 ALSVAGGFVALYVDCEEFQRMPLARSSRGLELEPGAGLFVAQAGGA-------DPDKFQGVIAELKVRR  224 (1167)
T ss_pred             eeeecCceEEEEechHHhcccchhccccceeecCCcceEEeccCCC-------ChHhhhhhhhheeecC
Confidence            99999999999999876554422222333  344456998865433       3467999999999854

>KOG4221|consensus

Probab=85.63  E-value=1  Score=54.21  Aligned_cols=43  Identities=35%  Similarity=0.677  Sum_probs=33.5

Q ss_pred             CcEEEEecCC-CCCcccc----CCCeEEEcccCCCCCeeEEEEEcCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA----EGNVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~----~~~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      ++|+|.|.+. |-.+...    ..+.|.|.+++..|+|.|.|.++|.+
T Consensus       267 p~v~Wlrng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~  314 (1381)
T KOG4221|consen  267 PSVKWLRNGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTN  314 (1381)
T ss_pred             CceEEeeCCeeeeecceEEEEecccceEEeccccccCceEEEEecCCC
Confidence            5899999433 5444211    46789999999999999999999854

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=85.57  E-value=0.61  Score=41.03  Aligned_cols=22  Identities=32%  Similarity=0.422  Sum_probs=20.2

Q ss_pred             CeEEEcccCCCCCeeEEEEEcC
Q psy9228          21 NVLRITNARLQDSGKYKCEIQG   42 (834)
Q Consensus        21 ~~l~~~~~~~~d~g~y~c~~~~   42 (834)
                      ..|.|.+++.+|+|+|.|.+..
T Consensus        72 ~~L~I~~~~~~Dsg~Y~Ca~~~   93 (110)
T cd05899          72 SSLTIKSAEPEDSAVYLCASSL   93 (110)
T ss_pred             cEEEECCCChhhCEEEEEEeeC
Confidence            5799999999999999999964

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=85.44  E-value=1.6  Score=33.84  Aligned_cols=37  Identities=24%  Similarity=0.350  Sum_probs=27.9

Q ss_pred             CcEEEEecCC-CCCccccCCCeEEEcccCCCCCeeEEEEEcCC
Q psy9228           2 AYIKWSRADG-LPLQRYAEGNVLRITNARLQDSGKYKCEIQGH   43 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~~~~~l~~~~~~~~d~g~y~c~~~~~   43 (834)
                      ..|.|.|.+- ++.    .+..+.+.+.. +++|.|.|.+.+.
T Consensus        19 ~~i~W~~n~~~~~g----~~~~~~~~~~~-e~~G~Y~C~~~~~   56 (65)
T cd07692          19 DDIKWKKNDQVSQG----SDEKYLSLNHF-SSSGYYHCTADNA   56 (65)
T ss_pred             CCceEEeCCccCCC----CCceEEeeccC-CCCceEEEEeCCC
Confidence            3589999665 433    45677888888 9999999999654

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>PF01414 DSL: Delta serrate ligand; InterPro: IPR001774 Ligands of the Delta/Serrate/lag-2 (DSL) family and their receptors, members of the lin-12/Notch family, mediate cell-cell interactions that specify cell fate in invertebrates and vertebrates

Probab=85.13  E-value=0.21  Score=38.62  Aligned_cols=42  Identities=31%  Similarity=0.788  Sum_probs=21.4

Q ss_pred             ceeeecCCCCCCCCCccCccCCCCCCccCCCceeeecCCCcEE------cCCCCCCCCCc
Q psy9228         591 GYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDSYEC------LCSLGYAPPNC  644 (834)
Q Consensus       591 ~~~C~C~~G~~G~~Ce~~~~~C~~~~pC~ngg~C~~~~~~~~C------~C~~g~~G~~C  644 (834)
                      .+.-.|.+.|.|..|..   .|.+.         .+..+.|+|      .|.+||+|+.|
T Consensus        16 ~~rv~C~~nyyG~~C~~---~C~~~---------~d~~ghy~Cd~~G~~~C~~Gw~G~~C   63 (63)
T PF01414_consen   16 RIRVVCDENYYGPNCSK---FCKPR---------DDSFGHYTCDSNGNKVCLPGWTGPNC   63 (63)
T ss_dssp             -------TTEETTTT-E---E---E---------EETTEEEEE-SS--EEE-TTEESTTS
T ss_pred             EEEEECCCCCCCccccC---CcCCC---------cCCcCCcccCCCCCCCCCCCCcCCCC
Confidence            67888999999999984   34322         022355666      58899999987

In Caenorhabditis elegans, two DSL genes, lag-2 and apx-1, influence different cell fate decisions during development []. Molecular interaction between Notch and Serrate, another EGF-homologous transmembrane protein containing a region of striking similarity to Delta, has been shown and the same two EGF repeats of Notch may also constitute a Serrate binding domain [, ].; GO: 0007154 cell communication, 0016020 membrane; PDB: 2VJ2_A.

>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity

Probab=85.02  E-value=0.85  Score=46.07  Aligned_cols=37  Identities=27%  Similarity=0.598  Sum_probs=28.2

Q ss_pred             CCCCCCCCCCCccCC--CCCCCeeecCCCCeEEeCCCCccc
Q psy9228         170 SGDRCSVLGEPCYPG--ACGDGSCQDVDGAMKCLCPIGTAG  208 (834)
Q Consensus       170 ~G~~Ce~~~~~C~~~--~C~~g~C~~~~~~~~C~C~~g~~G  208 (834)
                      .+..|+ +.++|...  +|. ..|.+..++|.|.|+.||+.
T Consensus       180 ~~~~C~-~~~~C~~~~~~c~-~~C~~~~g~~~c~c~~g~~~  218 (224)
T cd01475         180 QGKICV-VPDLCATLSHVCQ-QVCISTPGSYLCACTEGYAL  218 (224)
T ss_pred             ccccCc-CchhhcCCCCCcc-ceEEcCCCCEEeECCCCccC
Confidence            455675 56788653  454 47999999999999999974

Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.

>smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai

Probab=84.78  E-value=0.91  Score=32.69  Aligned_cols=16  Identities=38%  Similarity=0.982  Sum_probs=12.4

Q ss_pred             ceEeeCCCCCCCCCCC
Q psy9228         160 GYTCICPPGFSGDRCS  175 (834)
Q Consensus       160 ~~~C~C~~g~~G~~Ce  175 (834)
                      +-.|.|+++++|++|+
T Consensus        17 ~G~C~C~~~~~G~~C~   32 (46)
T smart00180       17 TGQCECKPNVTGRRCD   32 (46)
T ss_pred             CCEEECCCCCCCCCCC
Confidence            3478888888888886

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=84.74  E-value=0.61  Score=40.70  Aligned_cols=23  Identities=26%  Similarity=0.473  Sum_probs=20.2

Q ss_pred             CeEEEcccCCCCCeeEEEEEcCC
Q psy9228          21 NVLRITNARLQDSGKYKCEIQGH   43 (834)
Q Consensus        21 ~~l~~~~~~~~d~g~y~c~~~~~   43 (834)
                      ..|+|.+++.+|+|+|.|.+.+.
T Consensus        71 ~~L~I~~~~~~Dsg~Y~Ca~~~~   93 (106)
T cd04980          71 FTLTISRVEPEDAAVYYCQQYGT   93 (106)
T ss_pred             EEEEECCCChHHCEEEEEEEeCC
Confidence            36999999999999999999644

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium

Probab=84.41  E-value=0.48  Score=44.58  Aligned_cols=61  Identities=28%  Similarity=0.718  Sum_probs=43.3

Q ss_pred             CCCCCCeecccCCCCCceeeecCCCCC---CCCCccCccCCCC----CCccCCCceeeecC-----CCcEEcCCCCCC
Q psy9228         575 PCQNYGICYPTDTSERGYNCSCLTGYS---GDHCEKENNMCMK----GDVCKNGGMCKVTP-----DSYECLCSLGYA  640 (834)
Q Consensus       575 pC~ngg~C~~~~~~~~~~~C~C~~G~~---G~~Ce~~~~~C~~----~~pC~ngg~C~~~~-----~~~~C~C~~g~~  640 (834)
                      .|.| |..++..+   .|.|.|.+||.   -.+||... +|..    +.||.+-++|+...     ..|.|.|.+||.
T Consensus         7 ~CKN-G~LiQMSN---HfEC~Cnegfvl~~EntCE~kv-~C~~~e~~~K~Cgdya~C~~~~~~~~~~~~~C~C~~gY~   79 (197)
T PF06247_consen    7 ICKN-GYLIQMSN---HFECKCNEGFVLKNENTCEEKV-ECDKLENVNKPCGDYAKCINQANKGEERAYKCDCINGYI   79 (197)
T ss_dssp             --BT-EEEEEESS---EEEEEESTTEEEEETTEEEE-----SG-GGTTSEEETTEEEEE-SSTTSSTSEEEEE-TTEE
T ss_pred             cccC-CEEEEccC---ceEEEcCCCcEEccccccccce-ecCcccccCccccchhhhhcCCCcccceeEEEecccCce
Confidence            4554 57777776   99999999996   56788763 6654    24999999999875     589999999986

Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.

>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function

Probab=84.00  E-value=1.9  Score=41.88  Aligned_cols=91  Identities=18%  Similarity=0.251  Sum_probs=51.6

Q ss_pred             eeEEEEEEEee-C-CCCeeEEEeccCCccccCCCCCeEEEEEECcEEE--EEEecccEE--------EEeeeeecCCCeE
Q psy9228         405 LHFSIELSFKP-T-DYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPV--FRFDVGLVV--------LRSKVTLVPHEWV  472 (834)
Q Consensus       405 ~~~~i~~~frt-~-~~~GlLl~~~~~~~~~~~~~~d~~~l~L~~G~l~--~~~~~G~~~--------i~s~~~~~dg~wH  472 (834)
                      .++.+++.||. . ...|++|.....  .........+.+.|.+..-.  .....|...        .........++||
T Consensus        53 ~df~l~~d~k~~~~~~sGi~~r~~~~--~~~~~~~~gy~~~i~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~W~  130 (185)
T PF06439_consen   53 SDFELEVDFKITPGGNSGIFFRAQSP--GDGQDWNNGYEFQIDNSGGGTGLPNSTGSLYDEPPWQLEPSVNVAIPPGEWN  130 (185)
T ss_dssp             SSEEEEEEEEE-TT-EEEEEEEESSE--CCSSGGGTSEEEEEE-TTTCSTTTTSTTSBTTTB-TCB-SSS--S--TTSEE
T ss_pred             ccEEEEEEEEECCCCCeEEEEEeccc--cCCCCcceEEEEEEECCCCccCCCCccceEEEeccccccccccccCCCCceE
Confidence            45777777773 3 345666655400  01123455566666665443  011112221        2234567889999


Q ss_pred             EEEEEEECCeEEEEECCeeeeeeec
Q psy9228         473 VVTIIKDFKEGKLSVGGEPLIVGST  497 (834)
Q Consensus       473 ~V~v~~~~~~~~l~VD~~~~~~~~~  497 (834)
                      +++|...+..+++.||+........
T Consensus       131 ~~~I~~~g~~i~v~vnG~~v~~~~d  155 (185)
T PF06439_consen  131 TVRIVVKGNRITVWVNGKPVADFTD  155 (185)
T ss_dssp             EEEEEEETTEEEEEETTEEEEEEET
T ss_pred             EEEEEEECCEEEEEECCEEEEEEEc
Confidence            9999999999999999988766543

; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.

>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A

Probab=83.85  E-value=0.71  Score=31.18  Aligned_cols=18  Identities=50%  Similarity=1.178  Sum_probs=15.2

Q ss_pred             eeeecCCCcEEcCCCCCC
Q psy9228         623 MCKVTPDSYECLCSLGYA  640 (834)
Q Consensus       623 ~C~~~~~~~~C~C~~g~~  640 (834)
                      .|++.+++|+|.|++||.
T Consensus        11 ~C~~~~g~~~C~C~~Gy~   28 (36)
T PF14670_consen   11 ICVNTPGSYRCSCPPGYK   28 (36)
T ss_dssp             EEEEETTSEEEE-STTEE
T ss_pred             CCccCCCceEeECCCCCE
Confidence            688999999999999874

...

>PF01414 DSL: Delta serrate ligand; InterPro: IPR001774 Ligands of the Delta/Serrate/lag-2 (DSL) family and their receptors, members of the lin-12/Notch family, mediate cell-cell interactions that specify cell fate in invertebrates and vertebrates

Probab=83.57  E-value=0.4  Score=37.13  Aligned_cols=47  Identities=26%  Similarity=0.602  Sum_probs=20.5

Q ss_pred             CceEeeCCCCCCCCCCCCCCCCccCCCCCCC--eeecCCCCeEEeCCCCcccCcc
Q psy9228         159 IGYTCICPPGFSGDRCSVLGEPCYPGACGDG--SCQDVDGAMKCLCPIGTAGKRC  211 (834)
Q Consensus       159 ~~~~C~C~~g~~G~~Ce~~~~~C~~~~C~~g--~C~~~~~~~~C~C~~g~~G~~C  211 (834)
                      -.+.-.|.+.|.|..|..   .|.+.-=..|  +|.. .  -.-.|.+||+|+.|
T Consensus        15 ~~~rv~C~~nyyG~~C~~---~C~~~~d~~ghy~Cd~-~--G~~~C~~Gw~G~~C   63 (63)
T PF01414_consen   15 YRIRVVCDENYYGPNCSK---FCKPRDDSFGHYTCDS-N--GNKVCLPGWTGPNC   63 (63)
T ss_dssp             --------TTEETTTT-E---E---EEETTEEEEE-S-S----EEE-TTEESTTS
T ss_pred             EEEEEECCCCCCCccccC---CcCCCcCCcCCcccCC-C--CCCCCCCCCcCCCC
Confidence            357788999999999976   4444311111  4542 1  12358999999987

In Caenorhabditis elegans, two DSL genes, lag-2 and apx-1, influence different cell fate decisions during development []. Molecular interaction between Notch and Serrate, another EGF-homologous transmembrane protein containing a region of striking similarity to Delta, has been shown and the same two EGF repeats of Notch may also constitute a Serrate binding domain [, ].; GO: 0007154 cell communication, 0016020 membrane; PDB: 2VJ2_A.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=83.48  E-value=0.7  Score=40.48  Aligned_cols=23  Identities=35%  Similarity=0.567  Sum_probs=20.6

Q ss_pred             CeEEEcccCCCCCeeEEEEEcCC
Q psy9228          21 NVLRITNARLQDSGKYKCEIQGH   43 (834)
Q Consensus        21 ~~l~~~~~~~~d~g~y~c~~~~~   43 (834)
                      ..|+|.||+.+|+|.|.|.....
T Consensus        79 ~sL~i~~l~~~DsG~Y~C~v~~~  101 (114)
T PF07686_consen   79 FSLTIKNLQPSDSGTYFCQVSTS  101 (114)
T ss_dssp             EEEEESSESGGGEEEEEEEEEES
T ss_pred             EEEEECCCCcCcCEEEEEEEEEC
Confidence            36999999999999999999754

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=83.27  E-value=0.98  Score=40.41  Aligned_cols=22  Identities=36%  Similarity=0.474  Sum_probs=19.8

Q ss_pred             CeEEEcccCCCCCeeEEEEEcC
Q psy9228          21 NVLRITNARLQDSGKYKCEIQG   42 (834)
Q Consensus        21 ~~l~~~~~~~~d~g~y~c~~~~   42 (834)
                      ..|+|.+++.+|+|+|.|....
T Consensus        80 ~sL~I~~l~~~Dsg~Y~C~~~~  101 (119)
T cd05712          80 CSLLISDAQPEDSGKYFFRVEL  101 (119)
T ss_pred             EEEEEccCChhhCeEEEEEEEc
Confidence            4799999999999999999854

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=82.38  E-value=0.79  Score=39.27  Aligned_cols=22  Identities=23%  Similarity=0.481  Sum_probs=19.6

Q ss_pred             CeEEEcccCCCCCeeEEEEEcC
Q psy9228          21 NVLRITNARLQDSGKYKCEIQG   42 (834)
Q Consensus        21 ~~l~~~~~~~~d~g~y~c~~~~   42 (834)
                      -.|+|.+|+.+|+|.|.|....
T Consensus        64 ~~L~I~~v~~~DsG~Y~C~~~~   85 (98)
T cd05716          64 FTVTLNQLRKEDAGWYWCGVGD   85 (98)
T ss_pred             EEEEEcCCCHHHCEEEEEEccc
Confidence            3799999999999999999853

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd00098 IgC Immunoglobulin Constant domain

Probab=81.73  E-value=1.7  Score=36.72  Aligned_cols=43  Identities=12%  Similarity=0.312  Sum_probs=30.3

Q ss_pred             CcEEEEecCC-CCCccc--c----CCC------eEEEcccCCCCCeeEEEEEcCCC
Q psy9228           2 AYIKWSRADG-LPLQRY--A----EGN------VLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~--~----~~~------~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      ++|+|.|.+. +.....  .    .++      .|+|...+.+|.+.|.|.+.+..
T Consensus        30 ~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~   85 (95)
T cd00098          30 ITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHES   85 (95)
T ss_pred             cEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCC
Confidence            5899999555 766543  1    233      46677777779999999997654

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=81.68  E-value=1.1  Score=39.01  Aligned_cols=21  Identities=29%  Similarity=0.621  Sum_probs=19.3

Q ss_pred             eEEEcccCCCCCeeEEEEEcC
Q psy9228          22 VLRITNARLQDSGKYKCEIQG   42 (834)
Q Consensus        22 ~l~~~~~~~~d~g~y~c~~~~   42 (834)
                      .|+|.+++.+|+|+|.|....
T Consensus        70 ~L~I~~~~~sDsgtY~Ca~~~   90 (104)
T cd05720          70 VLTLKNFQKENEGYYFCSVAS   90 (104)
T ss_pred             EEEECCCCHHHCEEEEEEEcc
Confidence            699999999999999999863

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=80.16  E-value=1.1  Score=39.83  Aligned_cols=21  Identities=33%  Similarity=0.518  Sum_probs=19.3

Q ss_pred             CeEEEcccCCCCCeeEEEEEc
Q psy9228          21 NVLRITNARLQDSGKYKCEIQ   41 (834)
Q Consensus        21 ~~l~~~~~~~~d~g~y~c~~~   41 (834)
                      ..|+|.+++.+|+|+|.|.+.
T Consensus        77 ~~L~I~~~~~~Dsg~Y~C~~~   97 (116)
T cd04982          77 STLTIQNLEKEDSATYYCAYW   97 (116)
T ss_pred             EEEEEEECCHHHCEEEEEEEe
Confidence            379999999999999999995

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	834
3qcw_A	1245	Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6),		4e-21
3qcw_A	1245	Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6),		6e-10
3r05_A	1254	Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6),		1e-19
3r05_A	1254	Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6),		6e-10
3poy_A	1019	Crystal Structure Of The Alpha-Neurexin-1 Ectodomai		2e-19
3poy_A	1019	Crystal Structure Of The Alpha-Neurexin-1 Ectodomai		2e-12
3poy_A	1019	Crystal Structure Of The Alpha-Neurexin-1 Ectodomai		7e-10
3sh4_A	195	Laminin G Like Domain 3 From Human Perlecan Length		2e-19
3asi_A	410	Alpha-Neurexin-1 Ectodomain Fragment; Lns5-Egf3-Lns		4e-19
1pz7_A	204	Modulation Of Agrin Function By Alternative Splicin		1e-14
1pz7_A	204	Modulation Of Agrin Function By Alternative Splicin		9e-08
1q56_A	195	Nmr Structure Of The B0 Isoform Of The Agrin G3 Dom		1e-14
1q56_A	195	Nmr Structure Of The B0 Isoform Of The Agrin G3 Dom		2e-08
1pz8_A	201	Modulation Of Agrin Function By Alternative Splicin		1e-14
1pz8_A	201	Modulation Of Agrin Function By Alternative Splicin		1e-07
3pve_A	189	Crystal Structure Of The G2 Domain Of Agrin From Mu		8e-14
3pve_A	189	Crystal Structure Of The G2 Domain Of Agrin From Mu		4e-12
3v64_A	191	Crystal Structure Of Agrin And Lrp4 Length = 191		1e-11
3v64_A	191	Crystal Structure Of Agrin And Lrp4 Length = 191		4e-07
1dyk_A	394	Laminin Alpha 2 Chain Lg4-5 Domain Pair Length = 39		4e-09
1okq_A	394	Laminin Alpha 2 Chain Lg4-5 Domain Pair, Ca1 Site M		1e-08
2wjs_A	608	Crystal Structure Of The Lg1-3 Region Of The Lamini		2e-07
2vj3_A	135	Human Notch-1 Egfs 11-13 Length = 135		9e-06
2vj3_A	135	Human Notch-1 Egfs 11-13 Length = 135		1e-05
1e07_A	642	Model Of Human Carcinoembryonic Antigen By Homology		1e-05
2vj2_A	169	Human Jagged-1, Domains Dsl And Egfs1-3 Length = 16		1e-04
3mw4_A	178	Crystal Structure Of Beta-Neurexin 3 Without The Sp		2e-04
3h5c_B	317	X-Ray Structure Of Protein Z-Protein Z Inhibitor Co		8e-04
4d90_A	143	Crystal Structure Of Del-1 Egf Domains Length = 143		8e-04

>pdb|3QCW|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No Splice Inserts Length = 1245

Iteration: 1
 Score =  100 bits (249), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 178/771 (23%), Positives = 293/771 (38%), Gaps = 145/771 (18%)
Query: 74   GAFQGLDLSELVYIGAVPD--FGEIHPS----AGFSNGFKGCVSRLKYNKTEFELFKMAV 127
            G  + LDL + +Y+G +P+   G + P+    A  + G+ GC+  L  +    ++ +MA 
Sbjct: 544  GESEILDLDDELYLGGLPENKAGLVFPTEVWTALLNYGYVGCIRDLFIDGQSKDIRQMAE 603
Query: 128  ERVGVDSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACG 187
             +       +C       C++N                              PC      
Sbjct: 604  VQSTAGVKPSCSRETAKPCLSN------------------------------PCK----N 629
Query: 188  DGSCQDVDGAMKCLCP-IGTAGKRCEQKIKILQPAFKHGSYLAYPTPKTMRKFKVSLRLN 246
            +G C+D      C C   G  G+ CE++  +L  ++    ++    P  M      + L 
Sbjct: 630  NGMCRDGWNRYVCDCSGTGYLGRSCEREATVL--SYDGSMFMKIQLPVVMHTEAEDVSLR 687
Query: 247  PRDVRDGIILYSGQSDDGLGDFISLAIREKHMEFRFDTGSA-TPLYSNDAPAFNPVST-K 304
             R  R   IL +  S D   D + L +    ++   + G     L++      N   T +
Sbjct: 688  FRSQRAYGILMATTSRDS-ADTLRLELDAGRVKLTVNLGKGPETLFAGYNLNDNEWHTVR 746
Query: 305  EAPYGSKITLTCNNDLEAPVEYTWSK-RSNGHVLPFGAFSRENTLT---------LQEIK 354
                G  + LT ++      +      R   H +  G  +    L+         LQ + 
Sbjct: 747  VVRRGKSLKLTVDDQQAMTGQMAGDHTRLEFHNIETGIITERRYLSSVPSNFIGHLQSLT 806
Query: 355  -NSDAGMYVCKVSNKD---MTVEIPSILLVTDSVPLFTQKPLSYLALPTL---TDAHLHF 407
             N  A + +CK  + D   +        ++ D V   T+   SY+AL TL   T  HL F
Sbjct: 807  FNGMAYIDLCKNGDIDYCELNARFGFRNIIADPVTFKTKS--SYVALATLQAYTSMHLFF 864
Query: 408  SIELSFKPTDYNGLIMY-TGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVG----LVVLRS 462
                 FK T  +GLI+Y +GD N        DF+   L  GY  + FD+G    L+   S
Sbjct: 865  Q----FKTTSLDGLILYNSGDGN--------DFIVVELVKGYLHYVFDLGNGANLIKGSS 912
Query: 463  KVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGY--NIYH 520
               L  ++W  V I +D            +    T G +   L+L++ LY+GG     Y 
Sbjct: 913  NKPLNDNQWHNVMISRDTSNLHTVKIDTKITTQITAGAR--NLDLKSDLYIGGVAKETYK 970
Query: 521  VTPSLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANIMDCSDLESSPVCAPKPCQNYG 580
              P L V   EGF GC++++D+ G   DLI+ A+     ++      S  C    C N G
Sbjct: 971  SLPKL-VHAKEGFQGCLASVDLNGRLPDLISDALFCNGQIERGCEGPSTTCQEDSCSNQG 1029
Query: 581  ICYPTDTSERGYNCSC-LTGYSGDHCEKENNMCMKGDVCKNGGMC--KVTPDSYECLCSL 637
            +C        G++C C +T +SG  C       +     K GG    K  P+        
Sbjct: 1030 VCL---QQWDGFSCDCSMTSFSGPLCNDPGTTYI---FSKGGGQITYKWPPND------- 1076
Query: 638  GYAPPNCAKRVSIGSEVHFLGEGYVELKKELIEERRNEETIAFDFVTDDKNALLLWNGQP 697
               P   A R++IG                              F T  K A+L+   + 
Sbjct: 1077 --RPSTRADRLAIG------------------------------FSTVQKEAVLV---RV 1101
Query: 698  SYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLE 757
               +G+G +++ + +  G +   +++G   + I+ S   +NDG  H V  TR     +L+
Sbjct: 1102 DSSSGLG-DYLELHIHQGKIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATLQ 1160
Query: 758  VDSVIVGKGESPGSQ-DVINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMN 807
            VDS  V +    G Q  + N++  I +GG        G  +   +SGL  N
Sbjct: 1161 VDSWPVIERYPAGRQLTIFNSQATIIIGGKEQ-----GQPFQGQLSGLYYN 1206

>pdb|3QCW|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No Splice Inserts Length = 1245

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 94/207 (45%), Gaps = 21/207 (10%)
Query: 617 VCKNGGMCKVTPDSYECLCS-LGYAPPNCAKRVSIGSEVH---FLGEGYV--ELKKELIE 670
           VC NGG+C V  D   C CS  G+   +C++    G E +   F G  Y   +L +  I+
Sbjct: 197 VCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQ----GKEEYIATFKGSEYFCYDLSQNPIQ 252
Query: 671 ERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGV--V 728
              +E T++F   T  +N L+L  G+ +       +++ +A+ NG +    +LG G    
Sbjct: 253 SSSDEITLSFK--TLQRNGLMLHTGKSA-------DYVNLALKNGAVSLVINLGSGAFEA 303
Query: 729 TIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPN 788
            ++      ND   H V VTR  +  ++ VD ++   G +     ++ +    Y+GG+P+
Sbjct: 304 LVEPVNGKFNDNAWHDVKVTRNLRQVTISVDGILTTTGYTQEDYTMLGSDDFFYVGGSPS 363
Query: 789 MDLMTGGRYVHPMSGLMMNIHIQNKHI 815
              + G    +   G +  +  +N  +
Sbjct: 364 TADLPGSPVSNNFMGCLKEVVYKNNDV 390

>pdb|3R05|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With Splice Insert Ss3 Length = 1254

Iteration: 1
 Score = 95.5 bits (236), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 176/780 (22%), Positives = 291/780 (37%), Gaps = 154/780 (19%)
Query: 74   GAFQGLDLSELVYIGAVPD--FGEIHPS----AGFSNGFKGCVSRLKYNKTEFELFKMAV 127
            G  + LDL + +Y+G +P+   G + P+    A  + G+ GC+  L  +    ++ +MA 
Sbjct: 544  GESEILDLDDELYLGGLPENKAGLVFPTEVWTALLNYGYVGCIRDLFIDGQSKDIRQMAE 603
Query: 128  ERVGVDSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACG 187
             +       +C       C++N                              PC      
Sbjct: 604  VQSTAGVKPSCSRETAKPCLSN------------------------------PCK----N 629
Query: 188  DGSCQDVDGAMKCLCP-IGTAGKRCEQKIKILQPAFKHGSYLAYPTPKTMRKFKVSLRLN 246
            +G C+D      C C   G  G+ CE++  +L  ++    ++    P  M      + L 
Sbjct: 630  NGMCRDGWNRYVCDCSGTGYLGRSCEREATVL--SYDGSMFMKIQLPVVMHTEAEDVSLR 687
Query: 247  PRDVRDGIILYSGQSDDGLGDFISLAIREKHMEFRFD-----------TGSATPLYSNDA 295
             R  R   IL +  S D   D + L +    ++   +            G  T     + 
Sbjct: 688  FRSQRAYGILMATTSRDS-ADTLRLELDAGRVKLTVNLDCIRINCNSSKGPETLFAGYNL 746
Query: 296  PAFNPVSTKEAPYGSKITLTCNNDLEAPVEYTWSK-RSNGHVLPFGAFSRENTLT----- 349
                  + +    G  + LT ++      +      R   H +  G  +    L+     
Sbjct: 747  NDNEWHTVRVVRRGKSLKLTVDDQQAMTGQMAGDHTRLEFHNIETGIITERRYLSSVPSN 806
Query: 350  ----LQEIK-NSDAGMYVCKVSNKD---MTVEIPSILLVTDSVPLFTQKPLSYLALPTL- 400
                LQ +  N  A + +CK  + D   +        ++ D V   T+   SY+AL TL 
Sbjct: 807  FIGHLQSLTFNGMAYIDLCKNGDIDYCELNARFGFRNIIADPVTFKTKS--SYVALATLQ 864
Query: 401  --TDAHLHFSIELSFKPTDYNGLIMY-TGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVG- 456
              T  HL F     FK T  +GLI+Y +GD N        DF+   L  GY  + FD+G 
Sbjct: 865  AYTSMHLFFQ----FKTTSLDGLILYNSGDGN--------DFIVVELVKGYLHYVFDLGN 912
Query: 457  ---LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYL 513
               L+   S   L  ++W  V I +D            +    T G +   L+L++ LY+
Sbjct: 913  GANLIKGSSNKPLNDNQWHNVMISRDTSNLHTVKIDTKITTQITAGAR--NLDLKSDLYI 970
Query: 514  GGY--NIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANIMDCSDLESSPVC 571
            GG     Y   P L V   EGF GC++++D+ G   DLI+ A+     ++      S  C
Sbjct: 971  GGVAKETYKSLPKL-VHAKEGFQGCLASVDLNGRLPDLISDALFCNGQIERGCEGPSTTC 1029
Query: 572  APKPCQNYGICYPTDTSERGYNCSC-LTGYSGDHCEKENNMCMKGDVCKNGGMC--KVTP 628
                C N G+C        G++C C +T +SG  C       +     K GG    K  P
Sbjct: 1030 QEDSCSNQGVCL---QQWDGFSCDCSMTSFSGPLCNDPGTTYI---FSKGGGQITYKWPP 1083
Query: 629  DSYECLCSLGYAPPNCAKRVSIGSEVHFLGEGYVELKKELIEERRNEETIAFDFVTDDKN 688
            +           P   A R++IG                              F T  K 
Sbjct: 1084 ND---------RPSTRADRLAIG------------------------------FSTVQKE 1104
Query: 689  ALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVT 748
            A+L+   +    +G+G +++ + +  G +   +++G   + I+ S   +NDG  H V  T
Sbjct: 1105 AVLV---RVDSSSGLG-DYLELHIHQGKIGVKFNVGTDDIAIEESNAIINDGKYHVVRFT 1160
Query: 749  RINKFGSLEVDSVIVGKGESPGSQ-DVINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMN 807
            R     +L+VDS  V +    G Q  + N++  I +GG        G  +   +SGL  N
Sbjct: 1161 RSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKEQ-----GQPFQGQLSGLYYN 1215

>pdb|3R05|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With Splice Insert Ss3 Length = 1254

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 94/207 (45%), Gaps = 21/207 (10%)
Query: 617 VCKNGGMCKVTPDSYECLCS-LGYAPPNCAKRVSIGSEVH---FLGEGYV--ELKKELIE 670
           VC NGG+C V  D   C CS  G+   +C++    G E +   F G  Y   +L +  I+
Sbjct: 197 VCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQ----GKEEYIATFKGSEYFCYDLSQNPIQ 252
Query: 671 ERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGV--V 728
              +E T++F   T  +N L+L  G+ +       +++ +A+ NG +    +LG G    
Sbjct: 253 SSSDEITLSFK--TLQRNGLMLHTGKSA-------DYVNLALKNGAVSLVINLGSGAFEA 303
Query: 729 TIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPN 788
            ++      ND   H V VTR  +  ++ VD ++   G +     ++ +    Y+GG+P+
Sbjct: 304 LVEPVNGKFNDNAWHDVKVTRNLRQVTISVDGILTTTGYTQEDYTMLGSDDFFYVGGSPS 363
Query: 789 MDLMTGGRYVHPMSGLMMNIHIQNKHI 815
              + G    +   G +  +  +N  +
Sbjct: 364 TADLPGSPVSNNFMGCLKEVVYKNNDV 390

>pdb|3POY|A Chain A, Crystal Structure Of The Alpha-Neurexin-1 Ectodomain, Lns 2-6 Length = 1019

Iteration: 1
 Score = 94.7 bits (234), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 176/780 (22%), Positives = 291/780 (37%), Gaps = 154/780 (19%)
Query: 74  GAFQGLDLSELVYIGAVPD--FGEIHPS----AGFSNGFKGCVSRLKYNKTEFELFKMAV 127
           G  + LDL + +Y+G +P+   G + P+    A  + G+ GC+  L  +    ++ +MA 
Sbjct: 319 GESEILDLDDELYLGGLPENKAGLVFPTEVWTALLNYGYVGCIRDLFIDGQSKDIRQMAE 378
Query: 128 ERVGVDSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACG 187
            +       +C       C++N                              PC      
Sbjct: 379 VQSTAGVKPSCSRETAKPCLSN------------------------------PCK----N 404
Query: 188 DGSCQDVDGAMKCLCP-IGTAGKRCEQKIKILQPAFKHGSYLAYPTPKTMRKFKVSLRLN 246
           +G C+D      C C   G  G+ CE++  +L  ++    ++    P  M      + L 
Sbjct: 405 NGMCRDGWNRYVCDCSGTGYLGRSCEREATVL--SYDGSMFMKIQLPVVMHTEAEDVSLR 462
Query: 247 PRDVRDGIILYSGQSDDGLGDFISLAIREKHMEFRFD-----------TGSATPLYSNDA 295
            R  R   IL +  S D   D + L +    ++   +            G  T     + 
Sbjct: 463 FRSQRAYGILMATTSRDS-ADTLRLELDAGRVKLTVNLDCIRINCNSSKGPETLFAGYNL 521
Query: 296 PAFNPVSTKEAPYGSKITLTCNNDLEAPVEYTWSK-RSNGHVLPFGAFSRENTLT----- 349
                 + +    G  + LT ++      +      R   H +  G  +    L+     
Sbjct: 522 NDNEWHTVRVVRRGKSLKLTVDDQQAMTGQMAGDHTRLEFHNIETGIITERRYLSSVPSN 581
Query: 350 ----LQEIK-NSDAGMYVCKVSNKD---MTVEIPSILLVTDSVPLFTQKPLSYLALPTL- 400
               LQ +  N  A + +CK  + D   +        ++ D V   T+   SY+AL TL 
Sbjct: 582 FIGHLQSLTFNGMAYIDLCKNGDIDYCELNARFGFRNIIADPVTFKTKS--SYVALATLQ 639
Query: 401 --TDAHLHFSIELSFKPTDYNGLIMY-TGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVG- 456
             T  HL F     FK T  +GLI+Y +GD N        DF+   L  GY  + FD+G 
Sbjct: 640 AYTSMHLFFQ----FKTTSLDGLILYNSGDGN--------DFIVVELVKGYLHYVFDLGN 687
Query: 457 ---LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYL 513
              L+   S   L  ++W  V I +D            +    T G +   L+L++ LY+
Sbjct: 688 GANLIKGSSNKPLNDNQWHNVMISRDTSNLHTVKIDTKITTQITAGAR--NLDLKSDLYI 745
Query: 514 GGY--NIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANIMDCSDLESSPVC 571
           GG     Y   P L V   EGF GC++++D+ G   DLI+ A+     ++      S  C
Sbjct: 746 GGVAKETYKSLPKL-VHAKEGFQGCLASVDLNGRLPDLISDALFCNGQIERGCEGPSTTC 804
Query: 572 APKPCQNYGICYPTDTSERGYNCSC-LTGYSGDHCEKENNMCMKGDVCKNGGMC--KVTP 628
               C N G+C        G++C C +T +SG  C       +     K GG    K  P
Sbjct: 805 QEDSCSNQGVCLQ---QWDGFSCDCSMTSFSGPLCNDPGTTYI---FSKGGGQITYKWPP 858
Query: 629 DSYECLCSLGYAPPNCAKRVSIGSEVHFLGEGYVELKKELIEERRNEETIAFDFVTDDKN 688
           +           P   A R++IG                              F T  K 
Sbjct: 859 ND---------RPSTRADRLAIG------------------------------FSTVQKE 879
Query: 689 ALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVT 748
           A+L+   +    +G+G +++ + +  G +   +++G   + I+ S   +NDG  H V  T
Sbjct: 880 AVLV---RVDSSSGLG-DYLELHIHQGKIGVKFNVGTDDIAIEESNAIINDGKYHVVRFT 935
Query: 749 RINKFGSLEVDSVIVGKGESPGSQ-DVINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMN 807
           R     +L+VDS  V +    G Q  + N++  I +GG        G  +   +SGL  N
Sbjct: 936 RSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKEQ-----GQPFQGQLSGLYYN 990

>pdb|3POY|A Chain A, Crystal Structure Of The Alpha-Neurexin-1 Ectodomain, Lns 2-6 Length = 1019

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 132/288 (45%), Gaps = 39/288 (13%)
Query: 350 LQEI--KNSDAGMYVCKVSNK-DMTVEIPSILL-----VTDSVPLFTQKPLSYLALPTLT 401
           L+E+  KN+D  + + +++ + D  ++I  ++      V    P+  + P S+++LP   
Sbjct: 155 LKEVVYKNNDVRLELSRLAKQGDPKMKIHGVVAFKCENVATLDPITFETPESFISLPKW- 213
Query: 402 DAHLHFSIELSFKPTDYNGLIMYTGDS--NMKSYKG----KGDFVSFGLEDGYPVFRFDV 455
           +A    SI   F+ T+ NGLI+++     + K  K     K DF +  + DG+     D+
Sbjct: 214 NAKKTGSISFDFRTTEPNGLILFSHGKPRHQKDAKHPQMIKVDFFAIEMLDGHLYLLLDM 273
Query: 456 G-----LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGG--EPLIVGSTPGEKLQVLNLR 508
           G     +  L+ KV     EW  V   +D + G +SV     P    + PGE  ++L+L 
Sbjct: 274 GSGTIKIKALQKKVN--DGEWYHVDFQRDGRSGTISVNTLRTPY---TAPGES-EILDLD 327
Query: 509 TPLYLGGY-----NIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSA--VDSANIMD 561
             LYLGG       +   T   +  +  G+ GCI  + + G   D+   A    +A +  
Sbjct: 328 DELYLGGLPENKAGLVFPTEVWTALLNYGYVGCIRDLFIDGQSKDIRQMAEVQSTAGVKP 387
Query: 562 CSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCL-TGYSGDHCEKE 608
               E++  C   PC+N G+C   D   R Y C C  TGY G  CE+E
Sbjct: 388 SCSRETAKPCLSNPCKNNGMC--RDGWNR-YVCDCSGTGYLGRSCERE 432

>pdb|3POY|A Chain A, Crystal Structure Of The Alpha-Neurexin-1 Ectodomain, Lns 2-6 Length = 1019

Iteration: 1
 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 68/118 (57%), Gaps = 8/118 (6%)
Query: 677 TIAFDFVTDDKNALLLW-NGQPSYKNG------IGREFIAVAVVNGYLEYSYDLGDGVVT 729
           +I+FDF T + N L+L+ +G+P ++        I  +F A+ +++G+L    D+G G + 
Sbjct: 220 SISFDFRTTEPNGLILFSHGKPRHQKDAKHPQMIKVDFFAIEMLDGHLYLLLDMGSGTIK 279
Query: 730 IKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTP 787
           IK  +K VNDG  + V+  R  + G++ V+++      +PG  ++++    +YLGG P
Sbjct: 280 IKALQKKVNDGEWYHVDFQRDGRSGTISVNTLRTPY-TAPGESEILDLDDELYLGGLP 336

>pdb|3SH4|A Chain A, Laminin G Like Domain 3 From Human Perlecan Length = 195

Iteration: 1
 Score = 94.4 bits (233), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/133 (35%), Positives = 78/133 (58%), Gaps = 1/133 (0%)
Query: 676 ETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKK 735
           ETI  +  T   + LLLW G    + G G++FI++ + +G+L + Y LG G   +  S+ 
Sbjct: 32  ETIELEVRTSTASGLLLWQGVEVGEAGQGKDFISLGLQDGHLVFRYQLGSGEARL-VSED 90
Query: 736 PVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPNMDLMTGG 795
           P+NDG  H V   R  + GS++VD   +  G SPG    +N +G++Y+GG P++  +TGG
Sbjct: 91  PINDGEWHRVTALREGRRGSIQVDGEELVSGRSPGPNVAVNAKGSVYIGGAPDVATLTGG 150
Query: 796 RYVHPMSGLMMNI 808
           R+   ++G + N+
Sbjct: 151 RFSSGITGCVKNL 163

>pdb|3ASI|A Chain A, Alpha-Neurexin-1 Ectodomain Fragment; Lns5-Egf3-Lns6 Length = 410

Iteration: 1
 Score = 93.6 bits (231), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 118/443 (26%), Positives = 182/443 (41%), Gaps = 85/443 (19%)
Query: 379 LVTDSVPLFTQKPLSYLALPTL---TDAHLHFSIELSFKPTDYNGLIMY-TGDSNMKSYK 434
           ++ D V   T+   SY+AL TL   T  HL F     FK T  +GLI+Y +GD N     
Sbjct: 3   IIADPVTFKTKS--SYVALATLQAYTSMHLFFQ----FKTTSLDGLILYNSGDGN----- 51
Query: 435 GKGDFVSFGLEDGYPVFRFDVG----LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGE 490
              DF+   L  GY  + FD+G    L+   S   L  ++W  V I +D           
Sbjct: 52  ---DFIVVELVKGYLHYVFDLGNGANLIKGSSNKPLNDNQWHNVMISRDTSNLHTVKIDT 108
Query: 491 PLIVGSTPGEKLQVLNLRTPLYLGGY--NIYHVTPSLSVEVTEGFHGCISTIDVLGSELD 548
            +    T G +   L+L++ LY+GG     Y   P L V   EGF GC++++D+ G   D
Sbjct: 109 KITTQITAGAR--NLDLKSDLYIGGVAKETYKSLPKL-VHAKEGFQGCLASVDLNGRLPD 165
Query: 549 LINSAVDSANIMDCSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSC-LTGYSGDHCEK 607
           LI+ A+     ++      S  C    C N G+C        G++C C +T +SG  C  
Sbjct: 166 LISDALFCNGQIERGCEGPSTTCQEDSCSNQGVCLQ---QWDGFSCDCSMTSFSGPLCND 222
Query: 608 ENNMCMKGDVCKNGGMC--KVTPDSYECLCSLGYAPPNCAKRVSIGSEVHFLGEGYVELK 665
                +     K GG    K  P+           P   A R++IG              
Sbjct: 223 PGTTYI---FSKGGGQITYKWPPND---------RPSTRADRLAIG-------------- 256
Query: 666 KELIEERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGD 725
                           F T  K A+L+   +    +G+G +++ + +  G +   +++G 
Sbjct: 257 ----------------FSTVQKEAVLV---RVDSSSGLG-DYLELHIHQGKIGVKFNVGT 296
Query: 726 GVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQ-DVINTRGNIYLG 784
             + I+ S   +NDG  H V  TR     +L+VDS  V +    G Q  + N++  I +G
Sbjct: 297 DDIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIG 356
Query: 785 GTPNMDLMTGGRYVHPMSGLMMN 807
           G        G  +   +SGL  N
Sbjct: 357 GKEQ-----GQPFQGQLSGLYYN 374

>pdb|1PZ7|A Chain A, Modulation Of Agrin Function By Alternative Splicing And Ca2+ Binding Length = 204

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 80/160 (50%), Gaps = 10/160 (6%)
Query: 406 HFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVGL--VVLRSK 463
           HF  ELS K     GLI+++G    +S     D+++  + DG+    +D+G   VVLRS 
Sbjct: 51  HF--ELSIKTEATQGLILWSGKGLERS-----DYIALAIVDGFVQMMYDLGSKPVVLRST 103
Query: 464 VTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTP 523
           V +  + W  +   +  +EG L VG E  I GS+P    Q L+    L+LGG     V  
Sbjct: 104 VPINTNHWTHIKAYRVQREGSLQVGNEAPITGSSPLGATQ-LDTDGALWLGGMERLSVAH 162
Query: 524 SLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANIMDCS 563
            L    + GF GCI  + V   EL L+  A+++  I+ CS
Sbjct: 163 KLPKAYSTGFIGCIRDVIVDRQELHLVEDALNNPTILHCS 202

>pdb|1PZ7|A Chain A, Modulation Of Agrin Function By Alternative Splicing And Ca2+ Binding Length = 204

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 60/109 (55%), Gaps = 7/109 (6%)
Query: 684 TDDKNALLLWNGQPSYKNGIGR-EFIAVAVVNGYLEYSYDLGDGVVTIKFSKKPVNDGIK 742
           T+    L+LW+G+     G+ R ++IA+A+V+G+++  YDLG   V ++ S  P+N    
Sbjct: 58  TEATQGLILWSGK-----GLERSDYIALAIVDGFVQMMYDLGSKPVVLR-STVPINTNHW 111
Query: 743 HSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPNMDL 791
             +   R+ + GSL+V +     G SP     ++T G ++LGG   + +
Sbjct: 112 THIKAYRVQREGSLQVGNEAPITGSSPLGATQLDTDGALWLGGMERLSV 160

>pdb|1Q56|A Chain A, Nmr Structure Of The B0 Isoform Of The Agrin G3 Domain In Its Ca2+ Bound State Length = 195

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 80/160 (50%), Gaps = 10/160 (6%)
Query: 406 HFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVGL--VVLRSK 463
           HF  ELS K     GLI+++G    +S     D+++  + DG+    +D+G   VVLRS 
Sbjct: 42  HF--ELSIKTEATQGLILWSGKGLERS-----DYIALAIVDGFVQMMYDLGSKPVVLRST 94
Query: 464 VTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTP 523
           V +  + W  +   +  +EG L VG E  I GS+P    Q L+    L+LGG     V  
Sbjct: 95  VPINTNHWTHIKAYRVQREGSLQVGNEAPITGSSPLGATQ-LDTDGALWLGGMERLSVAH 153
Query: 524 SLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANIMDCS 563
            L    + GF GCI  + V   EL L+  A+++  I+ CS
Sbjct: 154 KLPKAYSTGFIGCIRDVIVDRQELHLVEDALNNPTILHCS 193

>pdb|1Q56|A Chain A, Nmr Structure Of The B0 Isoform Of The Agrin G3 Domain In Its Ca2+ Bound State Length = 195

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 73/141 (51%), Gaps = 9/141 (6%)
Query: 654 VHFLGEGYVELKKELIEERRNEETIAFDFV--TDDKNALLLWNGQPSYKNGIGR-EFIAV 710
           + F G  Y+E    + +  +  ++  F+    T+    L+LW+G+     G+ R ++IA+
Sbjct: 17  IAFDGRTYMEYHNAVTKSEKALQSNHFELSIKTEATQGLILWSGK-----GLERSDYIAL 71
Query: 711 AVVNGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPG 770
           A+V+G+++  YDLG   V ++ S  P+N      +   R+ + GSL+V +     G SP 
Sbjct: 72  AIVDGFVQMMYDLGSKPVVLR-STVPINTNHWTHIKAYRVQREGSLQVGNEAPITGSSPL 130
Query: 771 SQDVINTRGNIYLGGTPNMDL 791
               ++T G ++LGG   + +
Sbjct: 131 GATQLDTDGALWLGGMERLSV 151

>pdb|1PZ8|A Chain A, Modulation Of Agrin Function By Alternative Splicing And Ca2+ Binding Length = 201

Iteration: 1
 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 80/160 (50%), Gaps = 10/160 (6%)
Query: 406 HFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVGL--VVLRSK 463
           HF  ELS K     GLI+++G    +S     D+++  + DG+    +D+G   VVLRS 
Sbjct: 48  HF--ELSIKTEATQGLILWSGKGLERS-----DYIALAIVDGFVQMMYDLGSKPVVLRST 100
Query: 464 VTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTP 523
           V +  + W  +   +  +EG L VG E  I GS+P    Q L+    L+LGG     V  
Sbjct: 101 VPINTNHWTHIKAYRVQREGSLQVGNEAPITGSSPLGATQ-LDTDGALWLGGMERLSVAH 159
Query: 524 SLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANIMDCS 563
            L    + GF GCI  + V   EL L+  A+++  I+ CS
Sbjct: 160 KLPKAYSTGFIGCIRDVIVDRQELHLVEDALNNPTILHCS 199

>pdb|1PZ8|A Chain A, Modulation Of Agrin Function By Alternative Splicing And Ca2+ Binding Length = 201

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 60/109 (55%), Gaps = 7/109 (6%)
Query: 684 TDDKNALLLWNGQPSYKNGIGR-EFIAVAVVNGYLEYSYDLGDGVVTIKFSKKPVNDGIK 742
           T+    L+LW+G+     G+ R ++IA+A+V+G+++  YDLG   V ++ S  P+N    
Sbjct: 55  TEATQGLILWSGK-----GLERSDYIALAIVDGFVQMMYDLGSKPVVLR-STVPINTNHW 108
Query: 743 HSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPNMDL 791
             +   R+ + GSL+V +     G SP     ++T G ++LGG   + +
Sbjct: 109 THIKAYRVQREGSLQVGNEAPITGSSPLGATQLDTDGALWLGGMERLSV 157

>pdb|3PVE|A Chain A, Crystal Structure Of The G2 Domain Of Agrin From Mus Musculus Length = 189

Iteration: 1
 Score = 75.9 bits (185), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 58/180 (32%), Positives = 88/180 (48%), Gaps = 25/180 (13%)
Query: 392 LSYLALPTL----TDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDG 447
            SYL L  L     D     ++E+ F     +GL++Y G    +   GKGDFVS  L + 
Sbjct: 17  FSYLELKGLHTFERDLGEKMALEMVFLARGPSGLLLYNG----QKTDGKGDFVSLALHNR 72
Query: 448 YPVFRFDVG--LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVL 505
           +  FR+D+G    ++RSK  +    WV V + ++ ++G L VG  P ++G +P     +L
Sbjct: 73  HLEFRYDLGKGAAIIRSKEPIALGTWVRVFLERNGRKGALQVGDGPRVLGESPVPH-TML 131
Query: 506 NLRTPLYLGGYNIYHVTPSLS-----VEVTEGFHGCISTIDVLGSEL---DLINSAVDSA 557
           NL+ PLY+GG       P  S       V  GF G I  + + G +L   + +  AVD A
Sbjct: 132 NLKEPLYVGG------APDFSKLARGAAVASGFDGAIQLVSLRGHQLLTQEHVLRAVDVA 185

>pdb|3PVE|A Chain A, Crystal Structure Of The G2 Domain Of Agrin From Mus Musculus Length = 189

Iteration: 1
 Score = 70.5 bits (171), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 49/145 (33%), Positives = 77/145 (53%), Gaps = 6/145 (4%)
Query: 656 FLGEGYVELKKELIEERRNEETIAFD--FVTDDKNALLLWNGQPSYKNGIGREFIAVAVV 713
           F G  Y+ELK     ER   E +A +  F+    + LLL+NGQ +   G   +F+++A+ 
Sbjct: 14  FNGFSYLELKGLHTFERDLGEKMALEMVFLARGPSGLLLYNGQKTDGKG---DFVSLALH 70
Query: 714 NGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQD 773
           N +LE+ YDLG G   I+ SK+P+  G    V + R  + G+L+V       GESP    
Sbjct: 71  NRHLEFRYDLGKGAAIIR-SKEPIALGTWVRVFLERNGRKGALQVGDGPRVLGESPVPHT 129
Query: 774 VINTRGNIYLGGTPNMDLMTGGRYV 798
           ++N +  +Y+GG P+   +  G  V
Sbjct: 130 MLNLKEPLYVGGAPDFSKLARGAAV 154

>pdb|3V64|A Chain A, Crystal Structure Of Agrin And Lrp4 Length = 191

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 10/159 (6%)
Query: 406 HFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVGL--VVLRSK 463
           HF  ELS +     GL+++ G +  ++     D+++  + DG+    +D+G   VVLRS 
Sbjct: 38  HF--ELSLRTEATQGLVLWIGKAAERA-----DYMALAIVDGHLQLSYDLGSQPVVLRST 90
Query: 464 VTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTP 523
           V +  + W+ +   ++ +EG L VG E  + GS+P    Q L+    L+LGG     V  
Sbjct: 91  VKVNTNRWLRIRAHREHREGSLQVGNEAPVTGSSPLGATQ-LDTDGALWLGGLQKLPVGQ 149
Query: 524 SLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANIMDC 562
           +L      GF GC+  + V   +L L+  AV    +  C
Sbjct: 150 ALPKAYGTGFVGCLRDVVVGHRQLHLLEDAVTKPELRPC 188

>pdb|3V64|A Chain A, Crystal Structure Of Agrin And Lrp4 Length = 191

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 40/140 (28%), Positives = 67/140 (47%), Gaps = 15/140 (10%)
Query: 656 FLGEGYVELKKELIEERRNEETIA----------FDFVTDDKNALLLWNGQPSYKNGIGR 705
           F G  Y+E    +IE     E  A              T+    L+LW G+ + +     
Sbjct: 7   FDGRTYIEYLNAVIESELTNEIPAEKALQSNHFELSLRTEATQGLVLWIGKAAER----A 62
Query: 706 EFIAVAVVNGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGK 765
           +++A+A+V+G+L+ SYDLG   V ++ + K VN      +   R ++ GSL+V +     
Sbjct: 63  DYMALAIVDGHLQLSYDLGSQPVVLRSTVK-VNTNRWLRIRAHREHREGSLQVGNEAPVT 121
Query: 766 GESPGSQDVINTRGNIYLGG 785
           G SP     ++T G ++LGG
Sbjct: 122 GSSPLGATQLDTDGALWLGG 141

>pdb|1DYK|A Chain A, Laminin Alpha 2 Chain Lg4-5 Domain Pair Length = 394

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 71/144 (49%), Gaps = 8/144 (5%)
Query: 673 RNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKF 732
           +N  TI  +  T+ ++ LL +  + ++      +F  V + NG+  +SYDLG G  +   
Sbjct: 56  KNRLTIELEVRTEAESGLLFYMARINHA-----DFATVQLRNGFPYFSYDLGSGDTSTMI 110
Query: 733 SKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTP-NMDL 791
             K +NDG  H + + R+ + G L VD     +  SP   D+++  G +Y+GG P N   
Sbjct: 111 PTK-INDGQWHKIKIVRVKQEGILYVDDA-SSQTISPKKADILDVVGILYVGGLPINYTT 168
Query: 792 MTGGRYVHPMSGLMMNIHIQNKHI 815
              G   + + G + N+H++   +
Sbjct: 169 RRIGPVTYSLDGCVRNLHMEQAPV 192

>pdb|1OKQ|A Chain A, Laminin Alpha 2 Chain Lg4-5 Domain Pair, Ca1 Site Mutant Length = 394

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 8/144 (5%)
Query: 673 RNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKF 732
           +N  TI  +  T+ ++ LL +  + ++       F  V + NG+  +SYDLG G  +   
Sbjct: 56  KNRLTIELEVRTEAESGLLFYMARINHA-----AFATVQLRNGFPYFSYDLGSGDTSTMI 110
Query: 733 SKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTP-NMDL 791
             K +NDG  H + + R+ + G L VD     +  SP   D++   G +Y+GG P N   
Sbjct: 111 PTK-INDGQWHKIKIVRVKQEGILYVDDA-SSQTISPKKADILAVVGILYVGGLPINYTT 168
Query: 792 MTGGRYVHPMSGLMMNIHIQNKHI 815
              G   + + G + N+H++   +
Sbjct: 169 RRIGPVTYSLDGCVRNLHMEQAPV 192

>pdb|2WJS|A Chain A, Crystal Structure Of The Lg1-3 Region Of The Laminin Alpha2 Chain Length = 608

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 77/164 (46%), Gaps = 14/164 (8%)
Query: 654 VHFLGEGYVELKKELIEERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVV 713
           + F GEGY  + +  I    N  T+ F F T   +ALL++      K     +F++V + 
Sbjct: 206 IQFDGEGYALVSRP-IRWYPNISTVMFKFRTFSSSALLMYLATRDLK-----DFMSVELS 259
Query: 714 NGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQD 773
           +G+++ SYDLG G+ ++  S +  NDG   +  ++RI K  ++ +  +   + E+  +  
Sbjct: 260 DGHVKVSYDLGSGMTSV-VSNQNHNDGKWKAFTLSRIQKQANISIVDIDSNQEENVATSS 318
Query: 774 VINTRG-------NIYLGGTPNMDLMTGGRYVHPMSGLMMNIHI 810
             N  G        IY GG P +  +     V   SG + +I I
Sbjct: 319 SGNNFGLDLKADDKIYFGGLPTLRNLRPEVNVKKYSGCLKDIEI 362

>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13 Length = 135

Iteration: 1
 Score = 49.3 bits (116), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 144 NNCINNGLCQDAAT---RIG-YTCICPPGFSGDRCSVLGEPCYPGAC-GDGSCQDVDGAM 198
           N C++N  CQ+ AT   +IG + CIC PG+ G  C V  + C    C  +G C D     
Sbjct: 46  NECVSNP-CQNDATCLDQIGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEF 104
Query: 199 KCLCPIGTAGKRCE 212
           +C CP G  G  C+
Sbjct: 105 QCECPTGFTGHLCQ 118

>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13 Length = 135

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 575 PCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDSYECL 634
           PC++ G C  T  S   + C CL GY+G  CE + N C+  + C+N   C      ++C+
Sbjct: 14  PCEHAGKCINTLGS---FECQCLQGYTGPRCEIDVNECVS-NPCQNDATCLDQIGEFQCI 69
Query: 635 CSLGYAPPNC 644
           C  GY   +C
Sbjct: 70  CMPGYEGVHC 79

>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology Modelling And Curve-Fitting To Experimental Solution Scattering Data Length = 642

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 84/373 (22%), Positives = 139/373 (37%), Gaps = 73/373 (19%)
Query: 2   AYIKWSRADGLPLQ---RYAEGN-VLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNVE 57
            Y+ W     LP+    + + GN  L + N    D+  YKCE Q   S R SD V LNV 
Sbjct: 141 TYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVL 200
Query: 58  RMMFVDGIGPFSGESQGAFQGLDLSELVYIGAVPDFGEIHPSAGFSNGFKGCVSRLKYNK 117
                  I P +   +   + L+LS              +P A +S    G      + +
Sbjct: 201 YGPDAPTISPLNTSYRSG-ENLNLS---------CHAASNPPAQYSWFVNGT-----FQQ 245
Query: 118 TEFELFKMAVERVGVDSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVL 177
           +  ELF   +  + V++  +     HN+  + GL +   T I               +V 
Sbjct: 246 STQELF---IPNITVNNSGSYTCQAHNS--DTGLNRTTVTTI---------------TVY 285
Query: 178 GEPCYPGACGDGS--CQDVDG-AMKCLCPIGTAGKRCEQKIKILQPAFKHGSYLAYPTPK 234
            EP  P    + S   +D D  A+ C                  +P  ++ +YL +    
Sbjct: 286 AEPPKPFITSNNSNPVEDEDAVALTC------------------EPEIQNTTYLWW---V 324
Query: 235 TMRKFKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKHMEFRFDTGSATPLYSND 294
             +   VS RL   +    + L S   +D +G +    I+ +      D      LY  D
Sbjct: 325 NNQSLPVSPRLQLSNDNRTLTLLSVTRND-VGPY-ECGIQNELSVDHSDPVILNVLYGPD 382
Query: 295 APAFNPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIK 354
            P  +P  T   P G  ++L+C+     P +Y+W    N         ++E  L +  I 
Sbjct: 383 DPTISPSYTYYRP-GVNLSLSCHAASNPPAQYSWLIDGN-----IQQHTQE--LFISNIT 434
Query: 355 NSDAGMYVCKVSN 367
             ++G+Y C+ +N
Sbjct: 435 EKNSGLYTCQANN 447

>pdb|2VJ2|A Chain A, Human Jagged-1, Domains Dsl And Egfs1-3 Length = 169

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVT-PD 629
           C P P   +GIC         + C C T + G  C+K+ N C     C NGG C  T PD
Sbjct: 99  CIPHPGCVHGIC------NEPWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPD 152
Query: 630 SYECLCSLGYAPPNC 644
            Y+C C  GY+ PNC
Sbjct: 153 KYQCSCPEGYSGPNC 167

>pdb|3MW4|A Chain A, Crystal Structure Of Beta-Neurexin 3 Without The Splice Insert 4 Length = 178

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 5/120 (4%)
Query: 676 ETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKK 735
           + +A  F T  K+ +L+   +     G+G +F+ + +  G +   +++G   ++IK  + 
Sbjct: 31  DRLAVGFSTTVKDGILV---RIDSAPGLG-DFLQLHIEQGKIGVVFNIGTVDISIKEERT 86
Query: 736 PVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQ-DVINTRGNIYLGGTPNMDLMTG 794
           PVNDG  H V  TR     +L+VD+  V +    G Q  + NT+  I +GG     L  G
Sbjct: 87  PVNDGKYHVVRFTRNGANATLQVDNWPVNEHYPTGRQLTIFNTQAQIAIGGKDKGRLFQG 146

>pdb|3H5C|B Chain B, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex Length = 317

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCM--KGDVCKNGGMCKVTP 628
           C  +PC + G C     S  GY C+C  GY G +CE   N C   + D C++   C    
Sbjct: 8   CISQPCLHNGSC---QDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQH--FCLPGQ 62
Query: 629 DSYECLCSLGY 639
           +SY C C+ GY
Sbjct: 63  ESYTCSCAQGY 73

>pdb|4D90|A Chain A, Crystal Structure Of Del-1 Egf Domains Length = 143

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 55/131 (41%), Gaps = 25/131 (19%)
Query: 524 SLSVEVTEGFH--GCISTIDVLGSELDLINSAVDSANIMDCSDLESSPVCAPKPCQNYGI 581
           S S E  +GF    C S ++V   E                 +  S+  C P PC N G 
Sbjct: 22  SFSCECPDGFTDPNCSSVVEVASDE----------------EEPTSAGPCTPNPCHNGGT 65
Query: 582 C-----YPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDSYECLCS 636
           C     Y  DT   GY C C  G++G HC+   N C + + CKNGG+C     +Y C C 
Sbjct: 66  CEISEAYRGDTF-IGYVCKCPRGFNGIHCQHNINEC-EVEPCKNGGICTDLVANYSCECP 123
Query: 637 LGYAPPNCAKR 647
             +   NC  +
Sbjct: 124 GEFMGRNCQYK 134

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	834
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	4e-72
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	6e-65
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	1e-59
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	5e-21
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	8e-21
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	4e-17
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	6e-06
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	2e-64
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	1e-21
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	4e-21
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	1e-19
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	4e-07
3sh4_A	195	LG3 peptide; actin disassambly, integrin alpha12 B	4e-38
3sh4_A	195	LG3 peptide; actin disassambly, integrin alpha12 B	6e-31
3sh4_A	195	LG3 peptide; actin disassambly, integrin alpha12 B	2e-09
3sh4_A	195	LG3 peptide; actin disassambly, integrin alpha12 B	6e-07
1pz7_A	204	Agrin; structural protein; 1.42A {Gallus gallus} S	3e-37
1pz7_A	204	Agrin; structural protein; 1.42A {Gallus gallus} S	6e-32
1pz7_A	204	Agrin; structural protein; 1.42A {Gallus gallus} S	1e-11
1pz7_A	204	Agrin; structural protein; 1.42A {Gallus gallus} S	9e-10
3pve_A	189	Agrin, AGRN protein; mRNA splicing, structural gen	4e-36
3pve_A	189	Agrin, AGRN protein; mRNA splicing, structural gen	1e-32
3pve_A	189	Agrin, AGRN protein; mRNA splicing, structural gen	2e-14
3pve_A	189	Agrin, AGRN protein; mRNA splicing, structural gen	3e-10
3v64_A	191	Low-density lipoprotein receptor-related protein;	8e-35
3v64_A	191	Low-density lipoprotein receptor-related protein;	2e-33
3v64_A	191	Low-density lipoprotein receptor-related protein;	1e-11
3v64_A	191	Low-density lipoprotein receptor-related protein;	1e-06
2h0b_A	184	Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A	4e-33
2h0b_A	184	Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A	1e-28
2h0b_A	184	Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A	3e-10
2h0b_A	184	Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A	2e-07
2wjs_A	608	Laminin subunit alpha-2; integrin, secreted, coile	1e-30
2wjs_A	608	Laminin subunit alpha-2; integrin, secreted, coile	5e-30
2wjs_A	608	Laminin subunit alpha-2; integrin, secreted, coile	3e-28
2wjs_A	608	Laminin subunit alpha-2; integrin, secreted, coile	2e-23
2wjs_A	608	Laminin subunit alpha-2; integrin, secreted, coile	4e-23
2wjs_A	608	Laminin subunit alpha-2; integrin, secreted, coile	1e-20
2wjs_A	608	Laminin subunit alpha-2; integrin, secreted, coile	1e-04
2jd4_A	383	Laminin subunit alpha-1; basement membrane protein	1e-29
2jd4_A	383	Laminin subunit alpha-1; basement membrane protein	1e-28
2jd4_A	383	Laminin subunit alpha-1; basement membrane protein	1e-27
2jd4_A	383	Laminin subunit alpha-1; basement membrane protein	5e-21
2jd4_A	383	Laminin subunit alpha-1; basement membrane protein	3e-10
2jd4_A	383	Laminin subunit alpha-1; basement membrane protein	3e-05
2jd4_A	383	Laminin subunit alpha-1; basement membrane protein	1e-04
1dyk_A	394	Laminin alpha 2 chain; metal binding protein; 2.0A	1e-27
1dyk_A	394	Laminin alpha 2 chain; metal binding protein; 2.0A	2e-26
1dyk_A	394	Laminin alpha 2 chain; metal binding protein; 2.0A	3e-25
1dyk_A	394	Laminin alpha 2 chain; metal binding protein; 2.0A	3e-21
1dyk_A	394	Laminin alpha 2 chain; metal binding protein; 2.0A	1e-07
1dyk_A	394	Laminin alpha 2 chain; metal binding protein; 2.0A	6e-06
1f5f_A	205	SHBG, sex hormone-binding globulin; jellyroll, sig	9e-27
1f5f_A	205	SHBG, sex hormone-binding globulin; jellyroll, sig	1e-23
1f5f_A	205	SHBG, sex hormone-binding globulin; jellyroll, sig	3e-06
3bod_A	178	Neurexin-1-alpha; neurexin1D, LNS6, alternative sp	1e-26
3bod_A	178	Neurexin-1-alpha; neurexin1D, LNS6, alternative sp	6e-21
3bod_A	178	Neurexin-1-alpha; neurexin1D, LNS6, alternative sp	2e-06
2r16_A	182	Neurexin-1-alpha; beta-sandwich, cell adhesion, sp	1e-26
2r16_A	182	Neurexin-1-alpha; beta-sandwich, cell adhesion, sp	5e-24
2r16_A	182	Neurexin-1-alpha; beta-sandwich, cell adhesion, sp	2e-07
2r16_A	182	Neurexin-1-alpha; beta-sandwich, cell adhesion, sp	4e-06
1h30_A	422	GAS6, growth-arrest-specific protein; laminin G-do	2e-26
1h30_A	422	GAS6, growth-arrest-specific protein; laminin G-do	3e-25
1h30_A	422	GAS6, growth-arrest-specific protein; laminin G-do	6e-22
1h30_A	422	GAS6, growth-arrest-specific protein; laminin G-do	1e-09
1h30_A	422	GAS6, growth-arrest-specific protein; laminin G-do	5e-05
1d2s_A	170	SHBG, sex hormone-binding globulin; steroid transp	4e-26
1d2s_A	170	SHBG, sex hormone-binding globulin; steroid transp	9e-23
1d2s_A	170	SHBG, sex hormone-binding globulin; steroid transp	3e-08
1d2s_A	170	SHBG, sex hormone-binding globulin; steroid transp	6e-04
2r1d_A	226	Neurexin-1-beta, neurexin I-beta; beta-sandwich, c	3e-24
2r1d_A	226	Neurexin-1-beta, neurexin I-beta; beta-sandwich, c	1e-20
2r1d_A	226	Neurexin-1-beta, neurexin I-beta; beta-sandwich, c	1e-04
2r1b_A	220	Neurexin-1-beta, neurexin I-beta; beta-sandwich, c	2e-20
2r1b_A	220	Neurexin-1-beta, neurexin I-beta; beta-sandwich, c	1e-15
2r1b_A	220	Neurexin-1-beta, neurexin I-beta; beta-sandwich, c	8e-05
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	3e-18
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	1e-16
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	1e-15
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	1e-14
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	2e-08
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	4e-07
2vh0_B	134	Activated factor XA light chain; serine protease,	4e-17
2vh0_B	134	Activated factor XA light chain; serine protease,	4e-14
2vh0_B	134	Activated factor XA light chain; serine protease,	2e-12
2vh0_B	134	Activated factor XA light chain; serine protease,	4e-11
2vh0_B	134	Activated factor XA light chain; serine protease,	3e-10
2vh0_B	134	Activated factor XA light chain; serine protease,	6e-08
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	8e-17
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	3e-16
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	4e-14
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	1e-12
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	6e-07
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	3e-06
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	1e-16
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	8e-14
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	2e-13
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	3e-11
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	4e-11
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	5e-09
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	3e-06
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	4e-16
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	8e-12
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	2e-11
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	1e-10
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	2e-10
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	1e-09
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	1e-09
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	4e-06
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	8e-06
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	4e-15
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	1e-13
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	3e-07
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	1e-06
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	1e-06
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	3e-06
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	5e-15
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	7e-15
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	2e-07
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	6e-07
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	1e-06
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	1e-06
1aut_L	114	Activated protein C; serine proteinase, plasma cal	3e-13
1aut_L	114	Activated protein C; serine proteinase, plasma cal	3e-11
1aut_L	114	Activated protein C; serine proteinase, plasma cal	6e-07
1aut_L	114	Activated protein C; serine proteinase, plasma cal	2e-05
1aut_L	114	Activated protein C; serine proteinase, plasma cal	3e-05
1aut_L	114	Activated protein C; serine proteinase, plasma cal	6e-04
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	3e-12
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	2e-09
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	1e-11
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	4e-11
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	8e-11
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	1e-10
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	3e-10
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	3e-10
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	7e-10
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	8e-08
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	2e-07
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	9e-07
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	5e-06
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	8e-11
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	1e-10
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	3e-10
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	1e-09
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	2e-09
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	2e-09
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	8e-07
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	6e-06
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	4e-10
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	4e-06
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	9e-09
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	2e-08
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	3e-07
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	2e-06
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	3e-06
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	5e-05
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	8e-05
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	5e-04
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	1e-08
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	6e-06
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-05
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	1e-08
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	5e-04
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	2e-08
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	4e-08
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	6e-08
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	1e-07
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	2e-08
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-08
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-07
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	4e-07
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	8e-06
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	8e-06
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	8e-05
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	5e-04
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	3e-08
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	2e-05
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	4e-08
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-07
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	5e-07
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	8e-07
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-06
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	4e-06
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	8e-05
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	4e-08
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	6e-08
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-07
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-06
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-05
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	5e-05
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	5e-08
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	5e-07
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-06
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	5e-06
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	8e-06
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-05
1egf_A	53	Epidermal growth factor; NMR {Mus musculus} SCOP:	6e-08
1egf_A	53	Epidermal growth factor; NMR {Mus musculus} SCOP:	2e-05
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	6e-08
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	5e-07
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	3e-04
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	7e-08
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	3e-04
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	8e-08
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	3e-05
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	3e-04
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	9e-08
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	7e-06
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	7e-04
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	1e-07
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	1e-07
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	2e-05
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	1e-07
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	2e-06
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	1e-07
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	1e-05
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	1e-07
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	2e-07
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	6e-07
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	2e-07
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	3e-05
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	9e-04
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	2e-07
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	7e-06
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	3e-07
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	5e-05
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	5e-05
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	1e-04
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	1e-04
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	3e-07
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	3e-04
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	4e-07
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	1e-06
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	4e-05
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	3e-04
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	4e-07
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	4e-04
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	4e-07
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	1e-05
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	1e-05
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	1e-04
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	1e-04
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	5e-07
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	1e-06
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	4e-06
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	6e-04
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	5e-07
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	5e-07
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	3e-04
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	6e-04
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	7e-07
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	2e-05
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	4e-05
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	6e-05
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	2e-04
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	8e-07
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	3e-04
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	9e-07
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	3e-05
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	4e-05
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	5e-04
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	1e-06
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	1e-04
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	6e-04
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	1e-06
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	1e-05
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	2e-04
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	1e-06
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	1e-05
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	2e-05
2ens_A	96	Advanced glycosylation END product-specific recept	1e-06
2ens_A	96	Advanced glycosylation END product-specific recept	7e-04
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	1e-06
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	2e-05
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	1e-06
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	1e-05
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-04
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	3e-04
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	1e-06
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	2e-06
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	3e-06
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	1e-04
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	4e-04
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	5e-04
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	1e-06
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	2e-06
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	3e-04
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	2e-06
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	5e-06
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	1e-04
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	5e-04
1nql_B	53	Epidermal growth factor; cell surface receptor, ty	2e-06
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	2e-06
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	4e-06
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	8e-06
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	6e-05
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	1e-04
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	4e-04
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	2e-06
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	4e-06
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	1e-05
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	2e-06
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	2e-04
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	2e-06
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	1e-05
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	3e-05
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	4e-05
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	4e-05
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	6e-05
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	6e-04
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	2e-06
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	3e-06
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	9e-06
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	3e-05
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	3e-06
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	2e-04
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	3e-06
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	2e-05
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	2e-04
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	9e-04
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	3e-06
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	4e-06
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	4e-06
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	2e-05
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	4e-06
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	4e-05
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	2e-04
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	5e-06
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	1e-05
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	3e-05
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	3e-04
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	5e-06
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	3e-05
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	2e-04
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	5e-06
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	5e-05
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	5e-06
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	2e-04
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	4e-04
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	5e-06
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	7e-06
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	1e-04
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	7e-06
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	8e-04
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	7e-06
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	3e-05
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	5e-05
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	1e-05
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	2e-05
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	2e-05
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	1e-05
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	9e-05
3v65_B	386	Low-density lipoprotein receptor-related protein;	1e-05
3v65_B	386	Low-density lipoprotein receptor-related protein;	3e-04
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	1e-05
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	4e-05
1g1s_A	162	P-selectin; selectin, lectin, EGF, sulphated, SLEX	1e-05
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	1e-05
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	1e-05
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	7e-05
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	6e-04
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	1e-05
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	7e-05
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	1e-05
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	3e-05
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	5e-04
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	2e-05
4aqs_A	525	Laminin subunit beta-1; cell adhesion; HET: NAG BM	2e-05
4aqs_A	525	Laminin subunit beta-1; cell adhesion; HET: NAG BM	3e-05
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	2e-05
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	9e-04
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	2e-05
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	4e-04
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	2e-05
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	2e-05
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	2e-05
2edo_A	121	CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte	2e-05
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	2e-05
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	2e-05
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	2e-05
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	9e-05
2bou_A	143	EGF-like module containing mucin-like hormone rece	3e-05
2bou_A	143	EGF-like module containing mucin-like hormone rece	4e-04
2bou_A	143	EGF-like module containing mucin-like hormone rece	5e-04
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	3e-05
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	6e-04
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	3e-05
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	1e-04
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	3e-05
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	5e-05
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	4e-05
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	4e-05
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	4e-05
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	4e-05
1g1t_A	157	E-selectin; EGF, adhesion molecule, SLEX, immune s	5e-05
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	5e-05
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	6e-05
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	6e-05
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	6e-05
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	5e-04
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	7e-05
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	7e-05
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	7e-05
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	7e-05
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	8e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-05
3ltf_D	58	Protein spitz; receptor-ligand complex ectodomain	1e-04
1hae_A	63	Heregulin-alpha; growth factor; NMR {Homo sapiens}	1e-04
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	1e-04
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	6e-04
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	1e-04
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	1e-04
1iox_A	50	Betacellulin; EGF-like fold, hormone/growth factor	1e-04
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	2e-04
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	2e-04
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	2e-04
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	2e-04
3nt1_A	587	Prostaglandin-endoperoxide synthase 2; prostagland	2e-04
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	2e-04
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	2e-04
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	2e-04
3cfw_A	164	L-selectin; EGF, cell adhesion, EGF-like domain, g	3e-04
3e50_C	50	Protransforming growth factor alpha; IDE, TGF-alph	3e-04
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	3e-04
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	3e-04
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	3e-04
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	3e-04
2i9a_A	145	Urokinase-type plasminogen activator; growth facto	3e-04
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	4e-04
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	7e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-04
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	4e-04
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	4e-04
1k36_A	46	Epiregulin; EGF-like fold, hormone/growth factor c	4e-04
1xdt_R	79	Hbegf, heparin-binding epidermal growth factor; co	5e-04
1q4g_A	553	Prostaglandin G/H synthase 1; cyclooxygenase, non-	5e-04
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	5e-04
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	5e-04
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	6e-04
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	6e-04
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	7e-04
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	7e-04
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	8e-04
1n1i_A	105	Merozoite surface protein-1; MSP1, malaria, surfac	8e-04
2pnd_A	119	V-SET and immunoglobulin domain containing 4; comp	8e-04
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	9e-04

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245

 Score =  257 bits (656), Expect = 4e-72
 Identities = 144/806 (17%), Positives = 271/806 (33%), Gaps = 140/806 (17%)

Query: 60   MFVDGIGPFSGESQGAFQGLDLSELVYIGAVPD------FGEIHPSAGFSNGFKGCVSRL 113
            + V+ +      + G  + LDL + +Y+G +P+      F     +A  + G+ GC+  L
Sbjct: 531  ISVNTL-RTPYTAPGESEILDLDDELYLGGLPENKAGLVFPTEVWTALLNYGYVGCIRDL 589

Query: 114  KYNKTEFELFKMAVERVGVDSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDR 173
              +    ++ +MA  +       +C       C++N                        
Sbjct: 590  FIDGQSKDIRQMAEVQSTAGVKPSCSRETAKPCLSN------------------------ 625

Query: 174  CSVLGEPCYPGACGDGSCQDVDGAMKCLCPIGTAGKRCEQKIKILQPAFKHGSYLAYPTP 233
                  PC       G C+D      C C       R  ++   +   +    ++    P
Sbjct: 626  ------PCKNN----GMCRDGWNRYVCDCSGTGYLGRSCEREATVLS-YDGSMFMKIQLP 674

Query: 234  KTM--RKFKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKHMEFRFDTGSATPLY 291
              M      VSLR   +    GI++ +   D    D + L +    ++   + G      
Sbjct: 675  VVMHTEAEDVSLRFRSQR-AYGILMATTSRDSA--DTLRLELDAGRVKLTVNLGKGPETL 731

Query: 292  SNDAPA--FNPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNG------------HVL 337
                        + +    G  + LT ++  +  +    +                    
Sbjct: 732  FAGYNLNDNEWHTVRVVRRGKSLKLTVDD--QQAMTGQMAGDHTRLEFHNIETGIITERR 789

Query: 338  PFGAFSRENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSV--PLFTQKPLSYL 395
               +        LQ +  +         +      E+ +     + +  P+  +   SY+
Sbjct: 790  YLSSVPSNFIGHLQSLTFNGMAYIDLCKNGDIDYCELNARFGFRNIIADPVTFKTKSSYV 849

Query: 396  ALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDV 455
            AL TL  A+    +   FK T  +GLI+Y             DF+   L  GY  + FD+
Sbjct: 850  ALATL-QAYTSMHLFFQFKTTSLDGLILYNSG-------DGNDFIVVELVKGYLHYVFDL 901

Query: 456  G----LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTPL 511
            G    L+   S   L  ++W  V I +D            +    T G +   L+L++ L
Sbjct: 902  GNGANLIKGSSNKPLNDNQWHNVMISRDTSNLHTVKIDTKITTQITAGARN--LDLKSDL 959

Query: 512  YLGG-YNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANIMDCSDLESSPV 570
            Y+GG     + +    V   EGF GC++++D+ G   DLI+ A+     ++      S  
Sbjct: 960  YIGGVAKETYKSLPKLVHAKEGFQGCLASVDLNGRLPDLISDALFCNGQIERGCEGPSTT 1019

Query: 571  CAPKPCQNYGICYPTDTSERGYNCSC-LTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPD 629
            C    C N G+C        G++C C +T +SG  C       +                
Sbjct: 1020 CQEDSCSNQGVCLQQWD---GFSCDCSMTSFSGPLCNDPGTTYI---------------- 1060

Query: 630  SYECLCSLGYAPPNCAKRVSIGSEVHFLGEGYVELKKELIEER-RNEETIAFDFVTDDKN 688
                                        G G +  K    +      + +A  F T  K 
Sbjct: 1061 -------------------------FSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKE 1095

Query: 689  ALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVT 748
            A+L+     S       +++ + +  G +   +++G   + I+ S   +NDG  H V  T
Sbjct: 1096 AVLVRVDSSSGLG----DYLELHIHQGKIGVKFNVGTDDIAIEESNAIINDGKYHVVRFT 1151

Query: 749  RINKFGSLEVDSVIVGKGESPGSQ-DVINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMN 807
            R     +L+VDS  V +    G Q  + N++  I +GG              P  G +  
Sbjct: 1152 RSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKEQGQ---------PFQGQLSG 1202

Query: 808  IHIQNKHISNIGSSASSGLHVMPWIR 833
            ++     + N+ +   + + ++  +R
Sbjct: 1203 LYYNGLKVLNMAAENDANIAIVGNVR 1228

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245

 Score =  235 bits (601), Expect = 6e-65
 Identities = 140/813 (17%), Positives = 262/813 (32%), Gaps = 143/813 (17%)

Query: 60  MFVDGIGPFSGESQGAFQGLDLSELVYIGAVPDFGEIH------PSAGFSNGFKGCVSRL 113
           +F+D +     E +   + + +   +++G +P             S      FKG +  +
Sbjct: 98  LFIDQVEAKWVEVKSKRRDMTVFSGLFVGGLPPELRAAALKLTLASVREREPFKGWIRDV 157

Query: 114 KYNKTEFELFKMAVERVGVDSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDR 173
           +                          S     +++G  +            PP   G  
Sbjct: 158 RVQ------------------------SSLALPVDSGEVK--------LDDEPPNSGGGS 185

Query: 174 CSVLGEPCYPGACG-DGSCQDVDGAMKCLCP-IGTAGKRCEQKIKILQPAFKHGSYLAYP 231
               GE    G C   G C  VD    C C   G  GK C Q  +     FK   Y  Y 
Sbjct: 186 PCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGKEEYIATFKGSEYFCYD 245

Query: 232 TPK-TMRKFKVSLRLNPR-DVRDGIILYSGQSDDGLGDFISLAIREKHMEFRFD--TGSA 287
             +  ++     + L+ +   R+G++L++G+S     D+++LA++   +    +  +G+ 
Sbjct: 246 LSQNPIQSSSDEITLSFKTLQRNGLMLHTGKS----ADYVNLALKNGAVSLVINLGSGAF 301

Query: 288 TPLYSNDAPAFNPVSTKEAP---YGSKITLTCNNDLEAPVEYTWSKRSNGHVLP--FGAF 342
             L       FN  +  +        ++T++ +  L             G       G  
Sbjct: 302 EALVEPVNGKFNDNAWHDVKVTRNLRQVTISVDGILTTTGYTQEDYTMLGSDDFFYVGGS 361

Query: 343 SRENTLTLQEIKNS-------------------DAGMYVCKVSNKDMTVEIPSILLVTDS 383
                L    + N+                              K   V       V   
Sbjct: 362 PSTADLPGSPVSNNFMGCLKEVVYKNNDVRLELSRLAKQGDPKMKIHGVVAFKCENVATL 421

Query: 384 VPLFTQKPLSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSN------MKSYKGKG 437
            P+  + P S+++LP         SI   F+ T+ NGLI+++                K 
Sbjct: 422 DPITFETPESFISLPKWNAKK-TGSISFDFRTTEPNGLILFSHGKPRHQKDAKHPQMIKV 480

Query: 438 DFVSFGLEDGYPVFRFDVG---LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIV 494
           DF +  + DG+     D+G   + +   +  +   EW  V   +D + G +SV       
Sbjct: 481 DFFAIEMLDGHLYLLLDMGSGTIKIKALQKKVNDGEWYHVDFQRDGRSGTISVNTLR-TP 539

Query: 495 GSTPGEKLQVLNLRTPLYLGGYNIYHVTPSL-----SVEVTEGFHGCISTIDVLGSELDL 549
            + PGE  ++L+L   LYLGG               +  +  G+ GCI  + + G   D+
Sbjct: 540 YTAPGES-EILDLDDELYLGGLPENKAGLVFPTEVWTALLNYGYVGCIRDLFIDGQSKDI 598

Query: 550 INSAV--DSANIMDCSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEK 607
              A    +A +      E++  C   PC+N G+C                G++      
Sbjct: 599 RQMAEVQSTAGVKPSCSRETAKPCLSNPCKNNGMCRD--------------GWNR----- 639

Query: 608 ENNMCMKGDVCKNGGMCKVTPDSYECLCSLGYAPPNCAKRVSIGSEVHFLGEGYVELKKE 667
                                  Y C CS         +R +  + + + G  +++++  
Sbjct: 640 -----------------------YVCDCSGTGYLGRSCEREA--TVLSYDGSMFMKIQL- 673

Query: 668 LIEERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGV 727
            +      E ++  F +     +L+             + + + +  G ++ + +LG G 
Sbjct: 674 PVVMHTEAEDVSLRFRSQRAYGILMATTSRD-----SADTLRLELDAGRVKLTVNLGKGP 728

Query: 728 VTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTP 787
            T+ F+   +ND   H+V V R  K   L VD      G+  G    +          T 
Sbjct: 729 ETL-FAGYNLNDNEWHTVRVVRRGKSLKLTVDDQQAMTGQMAGDHTRLEFHNIETGIITE 787

Query: 788 NMDLMTGGR-YVHPMSGLMMNIHIQNKHISNIG 819
              L +    ++  +  L  N         N  
Sbjct: 788 RRYLSSVPSNFIGHLQSLTFNGMAYIDLCKNGD 820

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245

 Score =  220 bits (560), Expect = 1e-59
 Identities = 80/441 (18%), Positives = 143/441 (32%), Gaps = 65/441 (14%)

Query: 387 FTQKPLSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGL-E 445
           F      +   P   +A     +    K     GL++Y  D      +G  DF+   L  
Sbjct: 3   FPGAEGQWTRFPKW-NACCESEMSFQLKTRSARGLVLYFDD------EGFCDFLELILTR 55

Query: 446 DGYPVFRFDVG---LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKL 502
            G     F +       L +   +    W  V I + F+   L +            ++ 
Sbjct: 56  GGRLQLSFSIFCAEPATLLTDTPVNDGAWHNVRIRRQFRNTTLFIDQVEAKWVEVKSKRR 115

Query: 503 QVLNLRTPLYLGGY-----NIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAVDSA 557
             + + + L++GG               SV   E F G I  + V  S    ++S     
Sbjct: 116 D-MTVFSGLFVGGLPPELRAAALKLTLASVREREPFKGWIRDVRVQSSLALPVDSG---- 170

Query: 558 NIMDCSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDV 617
                                                       G    +      +G V
Sbjct: 171 --------------------------------EVKLDDEPPNSGGGSPCEAGEEG-EGGV 197

Query: 618 CKNGGMCKVTPDSYECLCS-LGYAPPNCAKRVSIGSEVHFLGEGYVELKKELIEERRNEE 676
           C NGG+C V  D   C CS  G+   +C++         F G  Y          + + +
Sbjct: 198 CLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGKEEYI-ATFKGSEYFCYDLSQNPIQSSSD 256

Query: 677 TIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGV--VTIKFSK 734
            I   F T  +N L+L  G+         +++ +A+ NG +    +LG G     ++   
Sbjct: 257 EITLSFKTLQRNGLMLHTGK-------SADYVNLALKNGAVSLVINLGSGAFEALVEPVN 309

Query: 735 KPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPNMDLMTG 794
              ND   H V VTR  +  ++ VD ++   G +     ++ +    Y+GG+P+   + G
Sbjct: 310 GKFNDNAWHDVKVTRNLRQVTISVDGILTTTGYTQEDYTMLGSDDFFYVGGSPSTADLPG 369

Query: 795 GRYVHPMSGLMMNIHIQNKHI 815
               +   G +  +  +N  +
Sbjct: 370 SPVSNNFMGCLKEVVYKNNDV 390

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245

 Score = 98.0 bits (243), Expect = 5e-21
 Identities = 33/190 (17%), Positives = 69/190 (36%), Gaps = 20/190 (10%)

Query: 392  LSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVF 451
            ++Y   P    +     + + F       +++    S+     G GD++   +  G    
Sbjct: 1068 ITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSS-----GLGDYLELHIHQGKIGV 1122

Query: 452  RFDVG---LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLR 508
            +F+VG   + +  S   +   ++ VV   +      L V   P+I     G +L + N +
Sbjct: 1123 KFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQ 1182

Query: 509  TPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANIMDCSDLESS 568
              + +GG            E  + F G +S +   G ++ L  +A + ANI    ++   
Sbjct: 1183 ATIIIGG-----------KEQGQPFQGQLSGLYYNGLKV-LNMAAENDANIAIVGNVRLV 1230

Query: 569  PVCAPKPCQN 578
                     +
Sbjct: 1231 GEVPSASTSH 1240

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245

 Score = 97.6 bits (242), Expect = 8e-21
 Identities = 32/177 (18%), Positives = 64/177 (36%), Gaps = 18/177 (10%)

Query: 654 VHFLGEG--YVELKKELIEERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVA 711
           + F G    +    K        E  ++F   T     L+L+       +    +F+ + 
Sbjct: 1   LEFPGAEGQWTRFPKW---NACCESEMSFQLKTRSARGLVLYFD-----DEGFCDFLELI 52

Query: 712 VV-NGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPG 770
           +   G L+ S+ +         +  PVNDG  H+V + R  +  +L +D V     E   
Sbjct: 53  LTRGGRLQLSFSIFCAEPATLLTDTPVNDGAWHNVRIRRQFRNTTLFIDQVEAKWVEVKS 112

Query: 771 SQDVINTRGNIYLGGTPN-------MDLMTGGRYVHPMSGLMMNIHIQNKHISNIGS 820
            +  +     +++GG P           +   R   P  G + ++ +Q+     + S
Sbjct: 113 KRRDMTVFSGLFVGGLPPELRAAALKLTLASVREREPFKGWIRDVRVQSSLALPVDS 169

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245

 Score = 85.7 bits (211), Expect = 4e-17
 Identities = 40/254 (15%), Positives = 81/254 (31%), Gaps = 44/254 (17%)

Query: 52   VKLNVERMMFVDGIGPFSGESQGAFQGLDLSELVYIGAVPD--FGEIHPSAGFSNGFKGC 109
            +  +   +  V      + +     + LDL   +YIG V    +  +        GF+GC
Sbjct: 926  ISRDTSNLHTVKIDTKITTQITAGARNLDLKSDLYIGGVAKETYKSLPKLVHAKEGFQGC 985

Query: 110  VSRLKYNKTEFELFKMAVERVGVDS---CNTCKSSKHNNCINNGLCQDAATRIGYTCICP 166
            ++ +  N    +L   A+   G           + + ++C N G+C       G++C C 
Sbjct: 986  LASVDLNGRLPDLISDALFCNGQIERGCEGPSTTCQEDSCSNQGVCLQQWD--GFSCDCS 1043

Query: 167  -PGFSGDRCSVLGEPCYPGACGDGSCQDVDGAMKCLCPIGTAGKRCEQKIKILQPAFKHG 225
               FSG  C+  G        G                                      
Sbjct: 1044 MTSFSGPLCNDPGTTYIFSKGGGQITYKWPP----------------------------- 1074

Query: 226  SYLAYPTPKTMRKFKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKHMEFRFDTG 285
                     + R  ++++  +    ++ +++    S  GLGD++ L I +  +  +F+ G
Sbjct: 1075 -----NDRPSTRADRLAIGFSTVQ-KEAVLVRV-DSSSGLGDYLELHIHQGKIGVKFNVG 1127

Query: 286  SATPLYSNDAPAFN 299
            +            N
Sbjct: 1128 TDDIAIEESNAIIN 1141

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Length = 1245

 Score = 49.1 bits (116), Expect = 6e-06
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 4/67 (5%)

Query: 225 GSYLAYPTPKTMRKFKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIRE-KHMEFRFD 283
           G +  +P      + ++S +L  R    G++LY    D+G  DF+ L +     ++  F 
Sbjct: 8   GQWTRFPKWNACCESEMSFQLKTR-SARGLVLYFD--DEGFCDFLELILTRGGRLQLSFS 64

Query: 284 TGSATPL 290
              A P 
Sbjct: 65  IFCAEPA 71

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus} Length = 410

 Score =  220 bits (562), Expect = 2e-64
 Identities = 98/453 (21%), Positives = 170/453 (37%), Gaps = 75/453 (16%)

Query: 385 PLFTQKPLSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGL 444
           P+  +   SY+AL TL  A+    +   FK T  +GLI+Y             DF+   L
Sbjct: 7   PVTFKTKSSYVALATL-QAYTSMHLFFQFKTTSLDGLILYNSG-------DGNDFIVVEL 58

Query: 445 EDGYPVFRFDVG----LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGE 500
             GY  + FD+G    L+   S   L  ++W  V I +D            +    T G 
Sbjct: 59  VKGYLHYVFDLGNGANLIKGSSNKPLNDNQWHNVMISRDTSNLHTVKIDTKITTQITAGA 118

Query: 501 KLQVLNLRTPLYLGGY-NIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANI 559
           +   L+L++ LY+GG     + +    V   EGF GC++++D+ G   DLI+ A+     
Sbjct: 119 R--NLDLKSDLYIGGVAKETYKSLPKLVHAKEGFQGCLASVDLNGRLPDLISDALFCNGQ 176

Query: 560 MDCSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSC-LTGYSGDHCEKENNMCMKGDVC 618
           ++      S  C    C N G+C        G++C C +T +SG  C       +     
Sbjct: 177 IERGCEGPSTTCQEDSCSNQGVCLQQWD---GFSCDCSMTSFSGPLCNDPGTTYI----- 228

Query: 619 KNGGMCKVTPDSYECLCSLGYAPPNCAKRVSIGSEVHFLGEGYVELKKELIEER-RNEET 677
                                                  G G +  K    +      + 
Sbjct: 229 ------------------------------------FSKGGGQITYKWPPNDRPSTRADR 252

Query: 678 IAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKKPV 737
           +A  F T  K A+L+     S       +++ + +  G +   +++G   + I+ S   +
Sbjct: 253 LAIGFSTVQKEAVLVRVDSSSGLG----DYLELHIHQGKIGVKFNVGTDDIAIEESNAII 308

Query: 738 NDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQD-VINTRGNIYLGGTPNMDLMTGGR 796
           NDG  H V  TR     +L+VDS  V +    G Q  + N++  I +GG           
Sbjct: 309 NDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKEQGQ------ 362

Query: 797 YVHPMSGLMMNIHIQNKHISNIGSSASSGLHVM 829
              P  G +  ++     + N+ +   + + ++
Sbjct: 363 ---PFQGQLSGLYYNGLKVLNMAAENDANIAIV 392

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus} Length = 410

 Score = 97.4 bits (242), Expect = 1e-21
 Identities = 33/185 (17%), Positives = 69/185 (37%), Gaps = 20/185 (10%)

Query: 392 LSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVF 451
           ++Y   P    +     + + F       +++    S+     G GD++   +  G    
Sbjct: 236 ITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSS-----GLGDYLELHIHQGKIGV 290

Query: 452 RFDVG---LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLR 508
           +F+VG   + +  S   +   ++ VV   +      L V   P+I     G +L + N +
Sbjct: 291 KFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQ 350

Query: 509 TPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANIMDCSDLESS 568
             + +GG            E  + F G +S +   G ++ L  +A + ANI    ++   
Sbjct: 351 ATIIIGG-----------KEQGQPFQGQLSGLYYNGLKV-LNMAAENDANIAIVGNVRLV 398

Query: 569 PVCAP 573
              + 
Sbjct: 399 GEVSR 403

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus} Length = 410

 Score = 95.8 bits (238), Expect = 4e-21
 Identities = 42/178 (23%), Positives = 76/178 (42%), Gaps = 16/178 (8%)

Query: 658 GEGYVELKKELIEERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYL 717
              YV L      +      + F F T   + L+L+N       G G +FI V +V GYL
Sbjct: 13  KSSYVALATL---QAYTSMHLFFQFKTTSLDGLILYNS------GDGNDFIVVELVKGYL 63

Query: 718 EYSYDLGDGVVTIK-FSKKPVNDGIKHSVNVTRINK-FGSLEVDSVIVGKGESPGSQDVI 775
            Y +DLG+G   IK  S KP+ND   H+V ++R      ++++D+ I    +       +
Sbjct: 64  HYVFDLGNGANLIKGSSNKPLNDNQWHNVMISRDTSNLHTVKIDTKIT--TQITAGARNL 121

Query: 776 NTRGNIYLGGTPNMDLMTGGRYVHPMSGL---MMNIHIQNKHISNIGSSASSGLHVMP 830
           + + ++Y+GG       +  + VH   G    + ++ +  +    I  +      +  
Sbjct: 122 DLKSDLYIGGVAKETYKSLPKLVHAKEGFQGCLASVDLNGRLPDLISDALFCNGQIER 179

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus} Length = 410

 Score = 91.2 bits (226), Expect = 1e-19
 Identities = 57/317 (17%), Positives = 105/317 (33%), Gaps = 68/317 (21%)

Query: 7   SRADGLPLQRYAEGN-----VLRITNARLQ---DSGKYKCEIQGHDSFRGSD------YV 52
           +  DGL L  Y  G+     V+ +    L    D G     I+G  +   +D       +
Sbjct: 37  TSLDGLIL--YNSGDGNDFIVVELVKGYLHYVFDLGNGANLIKGSSNKPLNDNQWHNVMI 94

Query: 53  KLNVERMMFVDGIGPFSGESQGAFQGLDLSELVYIGAVPD--FGEIHPSAGFSNGFKGCV 110
             +   +  V      + +     + LDL   +YIG V    +  +        GF+GC+
Sbjct: 95  SRDTSNLHTVKIDTKITTQITAGARNLDLKSDLYIGGVAKETYKSLPKLVHAKEGFQGCL 154

Query: 111 SRLKYNKTEFELFKMA------VERVGVDSCNTCKSSKHNNCINNGLCQDAATRIGYTCI 164
           + +  N    +L   A      +ER       TC+    ++C N G+C       G++C 
Sbjct: 155 ASVDLNGRLPDLISDALFCNGQIERGCEGPSTTCQE---DSCSNQGVCLQQWD--GFSCD 209

Query: 165 CP-PGFSGDRCSVLGEPCYPGACGDGSCQDVDGAMKCLCPIGTAGKRCEQKIKILQPAFK 223
           C    FSG  C+  G                                             
Sbjct: 210 CSMTSFSGPLCNDPGTTYIFSKG-----------------------------------GG 234

Query: 224 HGSYLAYPTPKTM-RKFKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKHMEFRF 282
             +Y   P  +   R  ++++  +    ++ +++    S  GLGD++ L I +  +  +F
Sbjct: 235 QITYKWPPNDRPSTRADRLAIGFSTVQ-KEAVLVRV-DSSSGLGDYLELHIHQGKIGVKF 292

Query: 283 DTGSATPLYSNDAPAFN 299
           + G+            N
Sbjct: 293 NVGTDDIAIEESNAIIN 309

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus} Length = 410

 Score = 52.3 bits (125), Expect = 4e-07
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 4/61 (6%)

Query: 226 SYLAYPTPKTMRKFKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKHMEFRFDTG 285
           SY+A  T +      +  +       DG+ILY+        DFI + + + ++ + FD G
Sbjct: 15  SYVALATLQAYTSMHLFFQFKTT-SLDGLILYNS---GDGNDFIVVELVKGYLHYVFDLG 70

Query: 286 S 286
           +
Sbjct: 71  N 71

>3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal binding Pro; 1.50A {Homo sapiens} PDB: 3sh5_A Length = 195

 Score =  140 bits (353), Expect = 4e-38
 Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 3/163 (1%)

Query: 655 HFLGEGYVELKKELIEE--RRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAV 712
           +F  +G++     +         ETI  +  T   + LLLW G    + G G++FI++ +
Sbjct: 9   YFHDDGFLAFPGHVFSRSLPEVPETIELEVRTSTASGLLLWQGVEVGEAGQGKDFISLGL 68

Query: 713 VNGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQ 772
            +G+L + Y LG G   +  S+ P+NDG  H V   R  + GS++VD   +  G SPG  
Sbjct: 69  QDGHLVFRYQLGSGEARLV-SEDPINDGEWHRVTALREGRRGSIQVDGEELVSGRSPGPN 127

Query: 773 DVINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNIHIQNKHI 815
             +N +G++Y+GG P++  +TGGR+   ++G + N+ + +   
Sbjct: 128 VAVNAKGSVYIGGAPDVATLTGGRFSSGITGCVKNLVLHSARP 170

>3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal binding Pro; 1.50A {Homo sapiens} PDB: 3sh5_A Length = 195

 Score =  119 bits (299), Expect = 6e-31
 Identities = 49/185 (26%), Positives = 85/185 (45%), Gaps = 18/185 (9%)

Query: 393 SYLALPTLTDAH----LHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGY 448
            +LA P    +     +  +IEL  + +  +GL+++ G    ++     DF+S GL+DG+
Sbjct: 14  GFLAFPGHVFSRSLPEVPETIELEVRTSTASGLLLWQGVEVGEA-GQGKDFISLGLQDGH 72

Query: 449 PVFRFDVG--LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLN 506
            VFR+ +G     L S+  +   EW  VT +++ + G + V GE L+ G +PG     +N
Sbjct: 73  LVFRYQLGSGEARLVSEDPINDGEWHRVTALREGRRGSIQVDGEELVSGRSPGPN-VAVN 131

Query: 507 LRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGS--------ELDLINSAVDSAN 558
            +  +Y+GG     V        + G  GC+  + +  +         LDL + A   AN
Sbjct: 132 AKGSVYIGGAP--DVATLTGGRFSSGITGCVKNLVLHSARPGAPPPQPLDLQHRAQAGAN 189

Query: 559 IMDCS 563
              C 
Sbjct: 190 TRPCP 194

>3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal binding Pro; 1.50A {Homo sapiens} PDB: 3sh5_A Length = 195

 Score = 57.2 bits (138), Expect = 2e-09
 Identities = 23/84 (27%), Positives = 28/84 (33%), Gaps = 9/84 (10%)

Query: 60  MFVDGIGPFSGESQGAFQGLDLSELVYIGAVPDFGEIHPSAGFSNGFKGCVSRLKYNKTE 119
           + VDG    SG S G    ++    VYIG  PD         FS+G  GCV  L  +   
Sbjct: 111 IQVDGEELVSGRSPGPNVAVNAKGSVYIGGAPD-VATLTGGRFSSGITGCVKNLVLHSAR 169

Query: 120 FE--------LFKMAVERVGVDSC 135
                     L   A        C
Sbjct: 170 PGAPPPQPLDLQHRAQAGANTRPC 193

>3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal binding Pro; 1.50A {Homo sapiens} PDB: 3sh5_A Length = 195

 Score = 49.9 bits (119), Expect = 6e-07
 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 9/75 (12%)

Query: 222 FKHGSYLAYPTPKTMR-----KFKVSLRLNPRDVRDGIILYSGQ---SDDGLGDFISLAI 273
           F    +LA+P     R        + L +       G++L+ G          DFISL +
Sbjct: 10  FHDDGFLAFPGHVFSRSLPEVPETIELEVRTS-TASGLLLWQGVEVGEAGQGKDFISLGL 68

Query: 274 REKHMEFRFDTGSAT 288
           ++ H+ FR+  GS  
Sbjct: 69  QDGHLVFRYQLGSGE 83

>1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} SCOP: b.29.1.4 PDB: 1pz8_A 1pz9_A 1q56_A Length = 204

 Score =  138 bits (348), Expect = 3e-37
 Identities = 55/179 (30%), Positives = 83/179 (46%), Gaps = 9/179 (5%)

Query: 387 FTQKPLSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLED 446
            +   L Y A P+   A      ELS K     GLI+++G         + D+++  + D
Sbjct: 31  KSPDALDYPAEPSE-KALQSNHFELSIKTEATQGLILWSGKGL-----ERSDYIALAIVD 84

Query: 447 GYPVFRFDVG--LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQV 504
           G+    +D+G   VVLRS V +  + W  +   +  +EG L VG E  I GS+P      
Sbjct: 85  GFVQMMYDLGSKPVVLRSTVPINTNHWTHIKAYRVQREGSLQVGNEAPITGSSPLGA-TQ 143

Query: 505 LNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANIMDCS 563
           L+    L+LGG     V   L    + GF GCI  + V   EL L+  A+++  I+ CS
Sbjct: 144 LDTDGALWLGGMERLSVAHKLPKAYSTGFIGCIRDVIVDRQELHLVEDALNNPTILHCS 202

>1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} SCOP: b.29.1.4 PDB: 1pz8_A 1pz9_A 1q56_A Length = 204

 Score =  122 bits (308), Expect = 6e-32
 Identities = 35/185 (18%), Positives = 72/185 (38%), Gaps = 10/185 (5%)

Query: 643 NCAKRVSIGSEVHFLGEGYVELKKELIEERRNEETIAFDFVTDDKNALLLWNGQPSYKNG 702
                             Y     E   +            T+    L+LW+G+      
Sbjct: 20  RTYMEYHNAVTKSPDALDYPAEPSE---KALQSNHFELSIKTEATQGLILWSGK----GL 72

Query: 703 IGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVI 762
              ++IA+A+V+G+++  YDLG   V ++ S  P+N      +   R+ + GSL+V +  
Sbjct: 73  ERSDYIALAIVDGFVQMMYDLGSKPVVLR-STVPINTNHWTHIKAYRVQREGSLQVGNEA 131

Query: 763 VGKGESPGSQDVINTRGNIYLGGTPNMDLMT--GGRYVHPMSGLMMNIHIQNKHISNIGS 820
              G SP     ++T G ++LGG   + +       Y     G + ++ +  + +  +  
Sbjct: 132 PITGSSPLGATQLDTDGALWLGGMERLSVAHKLPKAYSTGFIGCIRDVIVDRQELHLVED 191

Query: 821 SASSG 825
           + ++ 
Sbjct: 192 ALNNP 196

>1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} SCOP: b.29.1.4 PDB: 1pz8_A 1pz9_A 1q56_A Length = 204

 Score = 63.7 bits (155), Expect = 1e-11
 Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 1/79 (1%)

Query: 60  MFVDGIGPFSGESQGAFQGLDLSELVYIGAVPDFGEIHP-SAGFSNGFKGCVSRLKYNKT 118
           + V    P +G S      LD    +++G +      H     +S GF GC+  +  ++ 
Sbjct: 125 LQVGNEAPITGSSPLGATQLDTDGALWLGGMERLSVAHKLPKAYSTGFIGCIRDVIVDRQ 184

Query: 119 EFELFKMAVERVGVDSCNT 137
           E  L + A+    +  C+ 
Sbjct: 185 ELHLVEDALNNPTILHCSA 203

>1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} SCOP: b.29.1.4 PDB: 1pz8_A 1pz9_A 1q56_A Length = 204

 Score = 58.3 bits (141), Expect = 9e-10
 Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 2/81 (2%)

Query: 208 GKRCEQKIKILQPAFKHGSYLAYPTPKTMRKFKVSLRLNPRDVRDGIILYSGQSDDGLGD 267
           G+   +    +  +     Y A P+ K ++     L +       G+IL+SG+  +   D
Sbjct: 19  GRTYMEYHNAVTKSPDALDYPAEPSEKALQSNHFELSIKTE-ATQGLILWSGKGLER-SD 76

Query: 268 FISLAIREKHMEFRFDTGSAT 288
           +I+LAI +  ++  +D GS  
Sbjct: 77  YIALAIVDGFVQMMYDLGSKP 97

>3pve_A Agrin, AGRN protein; mRNA splicing, structural genomics, PSI-2, protein structure initiative; 1.40A {Mus musculus} Length = 189

 Score =  134 bits (338), Expect = 4e-36
 Identities = 53/189 (28%), Positives = 87/189 (46%), Gaps = 14/189 (7%)

Query: 381 TDSVPLFTQKPLSYLALPTLT----DAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGK 436
              +  F     SYL L  L     D     ++E+ F     +GL++Y G        GK
Sbjct: 8   RPFLADFN--GFSYLELKGLHTFERDLGEKMALEMVFLARGPSGLLLYNGQKT----DGK 61

Query: 437 GDFVSFGLEDGYPVFRFDVG--LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIV 494
           GDFVS  L + +  FR+D+G    ++RSK  +    WV V + ++ ++G L VG  P ++
Sbjct: 62  GDFVSLALHNRHLEFRYDLGKGAAIIRSKEPIALGTWVRVFLERNGRKGALQVGDGPRVL 121

Query: 495 GSTPGEKLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAV 554
           G +P     +LNL+ PLY+GG   +         V  GF G I  + + G +L      +
Sbjct: 122 GESPV-PHTMLNLKEPLYVGGAPDFSKLAR-GAAVASGFDGAIQLVSLRGHQLLTQEHVL 179

Query: 555 DSANIMDCS 563
            + ++   +
Sbjct: 180 RAVDVAPFA 188

>3pve_A Agrin, AGRN protein; mRNA splicing, structural genomics, PSI-2, protein structure initiative; 1.40A {Mus musculus} Length = 189

 Score =  123 bits (311), Expect = 1e-32
 Identities = 50/192 (26%), Positives = 86/192 (44%), Gaps = 11/192 (5%)

Query: 643 NCAKRVSIGSEVHFLGEGYVELK--KELIEERRNEETIAFDFVTDDKNALLLWNGQPSYK 700
           N   R  +     F G  Y+ELK       +   +  +   F+    + LLL+NGQ +  
Sbjct: 4   NAGSRPFL---ADFNGFSYLELKGLHTFERDLGEKMALEMVFLARGPSGLLLYNGQKTDG 60

Query: 701 NGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDS 760
            G   +F+++A+ N +LE+ YDLG G   I+ SK+P+  G    V + R  + G+L+V  
Sbjct: 61  KG---DFVSLALHNRHLEFRYDLGKGAAIIR-SKEPIALGTWVRVFLERNGRKGALQVGD 116

Query: 761 VIVGKGESPGSQDVINTRGNIYLGGTPNMD-LMTGGRYVHPMSGLMMNIHIQNKHISNIG 819
                GESP    ++N +  +Y+GG P+   L  G        G +  + ++   +    
Sbjct: 117 GPRVLGESPVPHTMLNLKEPLYVGGAPDFSKLARGAAVASGFDGAIQLVSLRGHQL-LTQ 175

Query: 820 SSASSGLHVMPW 831
                 + V P+
Sbjct: 176 EHVLRAVDVAPF 187

>3pve_A Agrin, AGRN protein; mRNA splicing, structural genomics, PSI-2, protein structure initiative; 1.40A {Mus musculus} Length = 189

 Score = 71.8 bits (176), Expect = 2e-14
 Identities = 18/76 (23%), Positives = 31/76 (40%)

Query: 60  MFVDGIGPFSGESQGAFQGLDLSELVYIGAVPDFGEIHPSAGFSNGFKGCVSRLKYNKTE 119
           + V       GES      L+L E +Y+G  PDF ++   A  ++GF G +  +     +
Sbjct: 112 LQVGDGPRVLGESPVPHTMLNLKEPLYVGGAPDFSKLARGAAVASGFDGAIQLVSLRGHQ 171

Query: 120 FELFKMAVERVGVDSC 135
               +  +  V V   
Sbjct: 172 LLTQEHVLRAVDVAPF 187

>3pve_A Agrin, AGRN protein; mRNA splicing, structural genomics, PSI-2, protein structure initiative; 1.40A {Mus musculus} Length = 189

 Score = 59.5 bits (144), Expect = 3e-10
 Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 6/72 (8%)

Query: 220 PAFKHGSYLAYPTPKTMR-----KFKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIR 274
             F   SYL      T       K  + +    R    G++LY+GQ  DG GDF+SLA+ 
Sbjct: 12  ADFNGFSYLELKGLHTFERDLGEKMALEMVFLARG-PSGLLLYNGQKTDGKGDFVSLALH 70

Query: 275 EKHMEFRFDTGS 286
            +H+EFR+D G 
Sbjct: 71  NRHLEFRYDLGK 82

>3v64_A Low-density lipoprotein receptor-related protein; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} PDB: 3v65_A Length = 191

 Score =  130 bits (328), Expect = 8e-35
 Identities = 46/172 (26%), Positives = 77/172 (44%), Gaps = 9/172 (5%)

Query: 393 SYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFR 452
               +P    A      ELS +     GL+++ G +       + D+++  + DG+    
Sbjct: 24  LTNEIPAE-KALQSNHFELSLRTEATQGLVLWIGKAA-----ERADYMALAIVDGHLQLS 77

Query: 453 FDVG--LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTP 510
           +D+G   VVLRS V +  + W+ +   ++ +EG L VG E  + GS+P      L+    
Sbjct: 78  YDLGSQPVVLRSTVKVNTNRWLRIRAHREHREGSLQVGNEAPVTGSSPLGA-TQLDTDGA 136

Query: 511 LYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANIMDC 562
           L+LGG     V  +L      GF GC+  + V   +L L+  AV    +  C
Sbjct: 137 LWLGGLQKLPVGQALPKAYGTGFVGCLRDVVVGHRQLHLLEDAVTKPELRPC 188

>3v64_A Low-density lipoprotein receptor-related protein; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} PDB: 3v65_A Length = 191

 Score =  126 bits (317), Expect = 2e-33
 Identities = 42/189 (22%), Positives = 80/189 (42%), Gaps = 18/189 (9%)

Query: 654 VHFLGEGYVELKKELIEER----------RNEETIAFDFVTDDKNALLLWNGQPSYKNGI 703
           + F G  Y+E    +IE                       T+    L+LW G+       
Sbjct: 5   LAFDGRTYIEYLNAVIESELTNEIPAEKALQSNHFELSLRTEATQGLVLWIGK----AAE 60

Query: 704 GREFIAVAVVNGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIV 763
             +++A+A+V+G+L+ SYDLG   V ++ S   VN      +   R ++ GSL+V +   
Sbjct: 61  RADYMALAIVDGHLQLSYDLGSQPVVLR-STVKVNTNRWLRIRAHREHREGSLQVGNEAP 119

Query: 764 GKGESPGSQDVINTRGNIYLGGTPNMDLMT--GGRYVHPMSGLMMNIHIQNKHISNIGSS 821
             G SP     ++T G ++LGG   + +       Y     G + ++ + ++ + ++   
Sbjct: 120 VTGSSPLGATQLDTDGALWLGGLQKLPVGQALPKAYGTGFVGCLRDVVVGHRQL-HLLED 178

Query: 822 ASSGLHVMP 830
           A +   + P
Sbjct: 179 AVTKPELRP 187

>3v64_A Low-density lipoprotein receptor-related protein; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} PDB: 3v65_A Length = 191

 Score = 63.7 bits (155), Expect = 1e-11
 Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 1/79 (1%)

Query: 60  MFVDGIGPFSGESQGAFQGLDLSELVYIGAVPDFGEIHP-SAGFSNGFKGCVSRLKYNKT 118
           + V    P +G S      LD    +++G +            +  GF GC+  +     
Sbjct: 112 LQVGNEAPVTGSSPLGATQLDTDGALWLGGLQKLPVGQALPKAYGTGFVGCLRDVVVGHR 171

Query: 119 EFELFKMAVERVGVDSCNT 137
           +  L + AV +  +  C T
Sbjct: 172 QLHLLEDAVTKPELRPCPT 190

>3v64_A Low-density lipoprotein receptor-related protein; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} PDB: 3v65_A Length = 191

 Score = 49.1 bits (117), Expect = 1e-06
 Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 15/80 (18%)

Query: 220 PAFKHGSYLAY-------------PTPKTMRKFKVSLRLNPRDVRDGIILYSGQSDDGLG 266
            AF   +Y+ Y             P  K ++     L L       G++L+ G++ +   
Sbjct: 5   LAFDGRTYIEYLNAVIESELTNEIPAEKALQSNHFELSLRTE-ATQGLVLWIGKAAER-A 62

Query: 267 DFISLAIREKHMEFRFDTGS 286
           D+++LAI + H++  +D GS
Sbjct: 63  DYMALAIVDGHLQLSYDLGS 82

>2h0b_A Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A {Bos taurus} Length = 184

 Score =  125 bits (315), Expect = 4e-33
 Identities = 33/164 (20%), Positives = 67/164 (40%), Gaps = 9/164 (5%)

Query: 654 VHFLGEGYVELKKELIEERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVV 713
             F G  Y          + + + I   F T  +N L+L  G+ +       +++ +A+ 
Sbjct: 8   ATFKGSEYFCYDLSQNPIQSSSDEITLSFKTLQRNGLMLHTGKSA-------DYVNLALK 60

Query: 714 NGYLEYSYDLGDGV--VTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGS 771
           NG +    +LG G     ++      ND   H V VTR  +  ++ VD ++   G +   
Sbjct: 61  NGAVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQVTISVDGILTTTGYTQED 120

Query: 772 QDVINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNIHIQNKHI 815
             ++ +    Y+GG+P+   + G    +   G +  +  +N  +
Sbjct: 121 YTMLGSDDFFYVGGSPSTADLPGSPVSNNFMGCLKEVVYKNNDV 164

>2h0b_A Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A {Bos taurus} Length = 184

 Score =  112 bits (282), Expect = 1e-28
 Identities = 35/169 (20%), Positives = 63/169 (37%), Gaps = 18/169 (10%)

Query: 393 SYLALPTLTDAH--LHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPV 450
            Y       +        I LSFK    NGL+++TG           D+V+  L++G   
Sbjct: 14  EYFCYDLSQNPIQSSSDEITLSFKTLQRNGLMLHTG--------KSADYVNLALKNGAVS 65

Query: 451 FRFDVG-----LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVL 505
              ++G      +V         + W  V + ++ ++  +SV G     G T  +   +L
Sbjct: 66  LVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQVTISVDGILTTTGYTQED-YTML 124

Query: 506 NLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAV 554
                 Y+GG       P     V+  F GC+  +    +++ L  S +
Sbjct: 125 GSDDFFYVGGSPSTADLPGSP--VSNNFMGCLKEVVYKNNDVRLELSRL 171

>2h0b_A Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A {Bos taurus} Length = 184

 Score = 59.1 bits (143), Expect = 3e-10
 Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 1/77 (1%)

Query: 60  MFVDGIGPFSGESQGAFQGLDLSELVYIGAVPDFGEIHPSAGFSNGFKGCVSRLKYNKTE 119
           + VDGI   +G +Q  +  L   +  Y+G  P   +  P +  SN F GC+  + Y   +
Sbjct: 105 ISVDGILTTTGYTQEDYTMLGSDDFFYVGGSPSTAD-LPGSPVSNNFMGCLKEVVYKNND 163

Query: 120 FELFKMAVERVGVDSCN 136
             L    + + G     
Sbjct: 164 VRLELSRLAKQGDPKMK 180

>2h0b_A Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A {Bos taurus} Length = 184

 Score = 51.0 bits (122), Expect = 2e-07
 Identities = 15/73 (20%), Positives = 32/73 (43%), Gaps = 8/73 (10%)

Query: 220 PAFKHGSYLAYPTPKTM---RKFKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREK 276
             FK   Y  Y   +        +++L       R+G++L++G+S     D+++LA++  
Sbjct: 8   ATFKGSEYFCYDLSQNPIQSSSDEITLSFKTL-QRNGLMLHTGKS----ADYVNLALKNG 62

Query: 277 HMEFRFDTGSATP 289
            +    + GS   
Sbjct: 63  AVSLVINLGSGAF 75

>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus} Length = 608

 Score =  127 bits (319), Expect = 1e-30
 Identities = 61/419 (14%), Positives = 129/419 (30%), Gaps = 66/419 (15%)

Query: 222 FKHGSYLAY-PTPKTMRKFKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKHMEF 280
                   Y P  K      + + +      D ++ Y G +     DF+++ +R+  + F
Sbjct: 15  SGGDCVRTYRPEIKKGSYNNIVVHVKTAV-ADNLLFYLGSAKFI--DFLAIEMRKGKVSF 71

Query: 281 RFDTGSATPLYSNDAPAFNP----------------VSTKEAPYGSKITLTCNNDLEAPV 324
            +D GS            +                 +S +         +       +P 
Sbjct: 72  LWDVGSGVGRVEYPDLTIDDSYWYRIEASRTGRNGSISVRALDGPKASMVPSTYHSVSPP 131

Query: 325 EYTWSKRSNGHVLPFGAFS------------------RENTLTLQEIKNSDAGMYVCKVS 366
            YT        +L  G  +                   E     + I   +         
Sbjct: 132 GYTILDVDANAMLFVGGLTGKIKKADAVRVITFTGCMGETYFDNKPIGLWNFREKEGDCK 191

Query: 367 NKDMTVEIPSILLVTDSVPLFTQKPLSYLALPTLTDAH-LHFSIELSFKPTDYNGLIMYT 425
              ++ +      V DS          Y  +      +    ++   F+    + L+MY 
Sbjct: 192 GCTVSPQ------VEDSEGTIQFDGEGYALVSRPIRWYPNISTVMFKFRTFSSSALLMYL 245

Query: 426 GDSNMKSYKGKGDFVSFGLEDGYPVFRFDVG--LVVLRSKVTLVPHEWVVVTIIKDFKEG 483
                   +   DF+S  L DG+    +D+G  +  + S       +W   T+ +  K+ 
Sbjct: 246 AT------RDLKDFMSVELSDGHVKVSYDLGSGMTSVVSNQNHNDGKWKAFTLSRIQKQA 299

Query: 484 KLSV-----GGEPLIVGSTPGEKLQV-LNLRTPLYLGGY-NIYHVTPSLSVEVTEGFHGC 536
            +S+       E  +  S+ G    + L     +Y GG   + ++ P ++    + + GC
Sbjct: 300 NISIVDIDSNQEENVATSSSGNNFGLDLKADDKIYFGGLPTLRNLRPEVN---VKKYSGC 356

Query: 537 ISTIDVLGSELDLINSAVDSANIMDCSDLESSPVCAPKPCQNYGICYPTDTSERGYNCS 595
           +  I++  +  ++++S         CS      V  PKP     +     + + G   +
Sbjct: 357 LKDIEISRTPYNILSSPDYVGVTKGCSLENVYTVSFPKPGF---VELAAVSIDVGTEIN 412

>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus} Length = 608

 Score =  125 bits (314), Expect = 5e-30
 Identities = 63/585 (10%), Positives = 135/585 (23%), Gaps = 145/585 (24%)

Query: 52  VKLNVERM---MFVDGIGPFSGESQGAFQGLDL--SELVYIGAVPDFGEIHPSAGFSNGF 106
             ++V  +           +   S   +  LD+  + ++++G +         A     F
Sbjct: 106 GSISVRALDGPKASMVPSTYHSVSPPGYTILDVDANAMLFVGGLTG-KIKKADAVRVITF 164

Query: 107 KGCVSRLKYNKTEFELFKMAVERVGVDSCNTCKSSKHNNCINNGLCQDAATRIGYTCICP 166
            GC+                                     +N               C 
Sbjct: 165 TGCM--------------------------------GETYFDNKPIGLWN-FREKEGDCK 191

Query: 167 PGFSGDRCSVLGEPCYPGACGDGSCQDVDGAMKCLCPIGTAGKRCEQKIKILQPAFKHGS 226
                 +                                                F    
Sbjct: 192 GCTVSPQVEDSEGTIQ---------------------------------------FDGEG 212

Query: 227 YLAYPTPKTMRK--FKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKHMEFRFDT 284
           Y     P         V  +         +++Y    D    DF+S+ + + H++  +D 
Sbjct: 213 YALVSRPIRWYPNISTVMFKFRTFS-SSALLMYLATRDLK--DFMSVELSDGHVKVSYDL 269

Query: 285 GSATP-LYSNDAPAFNPVSTKE------APYGSKITLT---------CNNDLEAPVEYTW 328
           GS    + SN        +  +      +    +  ++          N    +      
Sbjct: 270 GSGMTSVVSNQ-----NHNDGKWKAFTLSRIQKQANISIVDIDSNQEENVATSSSGNNFG 324

Query: 329 SKRSNGHVLPFGAFSRENTLTLQEIKNS----------DAGMYVCKVSNKDMTVEIPSIL 378
                   + FG       L  +                   Y    S+ D         
Sbjct: 325 LDLKADDKIYFGGLPTLRNLRPEVNVKKYSGCLKDIEISRTPYNIL-SSPDYVGVTKGCS 383

Query: 379 LVTDSVPLFTQKPLSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGD 438
           L       F +    ++ L  ++   +   I LSF   + +G+I+               
Sbjct: 384 LENVYTVSFPKP--GFVELAAVS-IDVGTEINLSFSTRNESGIILLGSGGG-------QA 433

Query: 439 FVSFGLEDGYPVFRFDVGLVVLRSKVTLVPH------EWVVVTIIKDFKEGKLSVGGEPL 492
           + +  L  G        G   +R  V               V + +      + +  +  
Sbjct: 434 YYAIFLNKGRLEVHLSSGTRTMRKIVIKPEPNRFHDGREHSVHVERTRGIFTVQIDEDRR 493

Query: 493 IVGSTPGEKLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINS 552
            + +   E+   +     L++GG         L       F GC+  + +    +D    
Sbjct: 494 HMQNLTEEQPIEVK---KLFVGGAPPEFQPSPLRN--IPAFQGCVWNLVINSIPMDFAQP 548

Query: 553 AV-DSANIMDCSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSC 596
               +A+I  C+          KP ++     P +   +      
Sbjct: 549 IAFKNADIGRCTY--------QKPREDESEAVPAEVIVQPQPVPT 585

>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus} Length = 608

 Score =  120 bits (301), Expect = 3e-28
 Identities = 50/223 (22%), Positives = 90/223 (40%), Gaps = 17/223 (7%)

Query: 612 CMKGDVCKNGGMCKVTPDSYECLCSLGYAPPNCAKRVSIGSEVHFLGEGYVELKKELIEE 671
           CM      N  +        E  C      P           + F GEGY  + +  I  
Sbjct: 167 CMGETYFDNKPIGLWNFREKEGDCKGCTVSPQVEDSEGT---IQFDGEGYALVSR-PIRW 222

Query: 672 RRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIK 731
             N  T+ F F T   +ALL++           ++F++V + +G+++ SYDLG G+ ++ 
Sbjct: 223 YPNISTVMFKFRTFSSSALLMYLATRD-----LKDFMSVELSDGHVKVSYDLGSGMTSV- 276

Query: 732 FSKKPVNDGIKHSVNVTRINKFGSLEVDSV-----IVGKGESPGSQDVINTRGN--IYLG 784
            S +  NDG   +  ++RI K  ++ +  +           S G+   ++ + +  IY G
Sbjct: 277 VSNQNHNDGKWKAFTLSRIQKQANISIVDIDSNQEENVATSSSGNNFGLDLKADDKIYFG 336

Query: 785 GTPNMDLMTGGRYVHPMSGLMMNIHIQNKHISNIGSSASSGLH 827
           G P +  +     V   SG + +I I     + + S    G+ 
Sbjct: 337 GLPTLRNLRPEVNVKKYSGCLKDIEISRTPYNILSSPDYVGVT 379

>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus} Length = 608

 Score =  105 bits (262), Expect = 2e-23
 Identities = 33/187 (17%), Positives = 72/187 (38%), Gaps = 20/187 (10%)

Query: 640 APPNCAKRVSIGSEVHFLGEGYVELKKELIEERRNEETIAFDFVTDDKNALLLWNGQPSY 699
           AP   A  + +   V   G+     + E+  ++ +   I     T   + LL + G    
Sbjct: 1   APLAQANSIKVS--VSSGGDCVRTYRPEI--KKGSYNNIVVHVKTAVADNLLFYLG---- 52

Query: 700 KNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVD 759
            +    +F+A+ +  G + + +D+G GV  +++    ++D   + +  +R  + GS+ V 
Sbjct: 53  -SAKFIDFLAIEMRKGKVSFLWDVGSGVGRVEYPDLTIDDSYWYRIEASRTGRNGSISVR 111

Query: 760 SVI---------VGKGESPGSQDV--INTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNI 808
           ++               SP    +  ++    +++GG            V   +G M   
Sbjct: 112 ALDGPKASMVPSTYHSVSPPGYTILDVDANAMLFVGGLTGKIKKADAVRVITFTGCMGET 171

Query: 809 HIQNKHI 815
           +  NK I
Sbjct: 172 YFDNKPI 178

>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus} Length = 608

 Score =  104 bits (259), Expect = 4e-23
 Identities = 41/207 (19%), Positives = 72/207 (34%), Gaps = 22/207 (10%)

Query: 612 CMKGDVCKNGGMCKVTPDSYECLCSLGYAPPNCAKRVSIGSEVHFLGEGYVELKKELIEE 671
           C+K D+  +          Y  L S  Y        +     V F   G+VEL       
Sbjct: 356 CLK-DIEISRT-------PYNILSSPDYVGVTKGCSLENVYTVSFPKPGFVELAAV---S 404

Query: 672 RRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGV---V 728
                 I   F T +++ ++L           G+ + A+ +  G LE     G      +
Sbjct: 405 IDVGTEINLSFSTRNESGIILLGSGG------GQAYYAIFLNKGRLEVHLSSGTRTMRKI 458

Query: 729 TIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPN 788
            IK      +DG +HSV+V R     ++++D            Q        +++GG P 
Sbjct: 459 VIKPEPNRFHDGREHSVHVERTRGIFTVQIDEDRRHMQNLTEEQ--PIEVKKLFVGGAPP 516

Query: 789 MDLMTGGRYVHPMSGLMMNIHIQNKHI 815
               +  R +    G + N+ I +  +
Sbjct: 517 EFQPSPLRNIPAFQGCVWNLVINSIPM 543

>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus} Length = 608

 Score = 96.3 bits (239), Expect = 1e-20
 Identities = 32/230 (13%), Positives = 60/230 (26%), Gaps = 33/230 (14%)

Query: 393 SYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFR 452
                        + +I +  K    + L+ Y G           DF++  +  G   F 
Sbjct: 19  CVRTYRPEIKKGSYNNIVVHVKTAVADNLLFYLGS------AKFIDFLAIEMRKGKVSFL 72

Query: 453 FDVG---LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSV----------GGEPLIVGSTPG 499
           +DVG     V    +T+    W  +   +  + G +SV                  S PG
Sbjct: 73  WDVGSGVGRVEYPDLTIDDSYWYRIEASRTGRNGSISVRALDGPKASMVPSTYHSVSPPG 132

Query: 500 EKLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANI 559
             +  ++    L++GG                 F GC+              +  D+  I
Sbjct: 133 YTILDVDANAMLFVGGLTGKIKKA--DAVRVITFTGCMG------------ETYFDNKPI 178

Query: 560 MDCSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKEN 609
              +  E    C                   G   + ++     +     
Sbjct: 179 GLWNFREKEGDCKGCTVSPQVEDSEGTIQFDGEGYALVSRPIRWYPNIST 228

>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus} Length = 608

 Score = 44.7 bits (105), Expect = 1e-04
 Identities = 20/135 (14%), Positives = 43/135 (31%), Gaps = 12/135 (8%)

Query: 51  YVKLNVER---MMFVDGIGPFSGESQGAFQGLDLSELVYIGAVPDFGEIHPSAGFSNGFK 107
            V +   R    + +D       ++    Q +++ +L ++G  P   +  P       F+
Sbjct: 474 SVHVERTRGIFTVQIDE-DRRHMQNLTEEQPIEVKKL-FVGGAPPEFQPSPLRNIP-AFQ 530

Query: 108 GCVSRLKYNKTEFELFKMAV-ERVGVDSCNTCKSSKHNNCINNGLCQDAATRIGYTCICP 166
           GCV  L  N    +  +    +   +  C   K        +      A   +    +  
Sbjct: 531 GCVWNLVINSIPMDFAQPIAFKNADIGRCTYQKP-----REDESEAVPAEVIVQPQPVPT 585

Query: 167 PGFSGDRCSVLGEPC 181
           P F     +++  P 
Sbjct: 586 PAFPFPAPTMVHGPA 600

>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus} Length = 383

 Score =  120 bits (303), Expect = 1e-29
 Identities = 27/200 (13%), Positives = 60/200 (30%), Gaps = 14/200 (7%)

Query: 627 TPDSYECLCSLGYAPPNCAKRVSIGSEVHFLGEGYVELKKELIEERRNEETIAFDFVTDD 686
                 C           A +             ++ L      + R    +     T  
Sbjct: 3   LAQPELCAVDTAPGYVAGAHQFG------LSQNSHLVLPL-QQSDVRKRLQVQLSIRTFA 55

Query: 687 KNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVN 746
            + L+ +    +  +     +  + +  G L + +DLG G   +      ++DG  H+V 
Sbjct: 56  SSGLIYYVAHQNQMD-----YATLQLQEGRLHFMFDLGKGRTKVS-HPALLSDGKWHTVK 109

Query: 747 VTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPNMDLMTGGRYVHP-MSGLM 805
              I +   + VD          G    ++    +YLGG P+         +   +   +
Sbjct: 110 TEYIKRKAFMTVDGQESPSVTVVGKATTLDVERKLYLGGLPSHYRARNIGTITHSIPACI 169

Query: 806 MNIHIQNKHISNIGSSASSG 825
             I +  + +      ++S 
Sbjct: 170 GEIMVNGQQLDKDRPLSASA 189

>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus} Length = 383

 Score =  117 bits (295), Expect = 1e-28
 Identities = 41/196 (20%), Positives = 76/196 (38%), Gaps = 12/196 (6%)

Query: 387 FTQKPLSYLALPTL-TDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLE 445
           F     S+L LP   +D      ++LS +    +GLI Y         + + D+ +  L+
Sbjct: 24  FGLSQNSHLVLPLQQSDVRKRLQVQLSIRTFASSGLIYYVAH------QNQMDYATLQLQ 77

Query: 446 DGYPVFRFDVG--LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQ 503
           +G   F FD+G     +     L   +W  V      ++  ++V G+     +  G K  
Sbjct: 78  EGRLHFMFDLGKGRTKVSHPALLSDGKWHTVKTEYIKRKAFMTVDGQESPSVTVVG-KAT 136

Query: 504 VLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANIMDCS 563
            L++   LYLGG   ++   ++   +T     CI  I V G +LD  +  + ++ +  C 
Sbjct: 137 TLDVERKLYLGGLPSHYRARNIGT-ITHSIPACIGEIMVNGQQLDK-DRPLSASAVDRCY 194

Query: 564 DLESSPVCAPKPCQNY 579
            +              
Sbjct: 195 VVAQEGTFFEGSGYAA 210

>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus} Length = 383

 Score =  115 bits (288), Expect = 1e-27
 Identities = 68/397 (17%), Positives = 117/397 (29%), Gaps = 61/397 (15%)

Query: 200 CLCPIGTAGKRCEQKIKILQPAFKHGSYLAYPTPKTM--RKFKVSLRLNPRDVRDGIILY 257
           C                  Q      S+L  P  ++   ++ +V L +       G+I Y
Sbjct: 9   CAVD---TAPGYVAGA--HQFGLSQNSHLVLPLQQSDVRKRLQVQLSIRTFA-SSGLIYY 62

Query: 258 SGQSDDGLGDFISLAIREKHMEFRFDTGSATPLYSNDAP----AFNPVSTKEAPYGSKIT 313
               +    D+ +L ++E  + F FD G      S+ A      ++ V T+      K  
Sbjct: 63  VAHQNQM--DYATLQLQEGRLHFMFDLGKGRTKVSHPALLSDGKWHTVKTEY--IKRKAF 118

Query: 314 LTCNNDLEAPVEYTWSKRSNGHV-------------LPFGAFSRENTLTLQE----IKNS 356
           +T +       + + S    G               LP    +R            I   
Sbjct: 119 MTVDG------QESPSVTVVGKATTLDVERKLYLGGLPSHYRARNIGTITHSIPACIGEI 172

Query: 357 DAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKPLSYLALPTLTDAHLHFSIELSFKPT 416
                            +    +V      F     + L         L   I L F+ T
Sbjct: 173 MVNGQQLDKDRPLSASAVDRCYVVAQEGTFFEGSGYAALVKEGYK-VRLDLQITLEFRTT 231

Query: 417 DYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVG------LVVLRSKVTLVPHE 470
             NG+++            K D +   + DG  +F  + G          R+   L   +
Sbjct: 232 SKNGVLLGISS-------AKVDAIGLEIVDGKVLFHVNNGAGRITATYQPRAARALCDGK 284

Query: 471 WVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTPSLSVEVT 530
           W  +   K      L+V G  +   S         +   P+Y+GGY  +      S+   
Sbjct: 285 WHTLQAHKSKHRIVLTVDGNSVRAESPHTHSTS-ADTNDPIYVGGYPAH--IKQNSLSSR 341

Query: 531 EGFHGCISTIDV----LGSELDLINSAVDSANIMDCS 563
             F GC+  + +        LDL + A D   +   S
Sbjct: 342 ASFRGCVRNLRLSRGSQVQSLDL-SRAFDLQGVFPHS 377

>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus} Length = 383

 Score = 95.0 bits (236), Expect = 5e-21
 Identities = 36/164 (21%), Positives = 60/164 (36%), Gaps = 10/164 (6%)

Query: 655 HFLGEGYVELKKELIEERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVN 714
            F G GY  L KE  +  R +  I  +F T  KN +LL             + I + +V+
Sbjct: 202 FFEGSGYAALVKEGYK-VRLDLQITLEFRTTSKNGVLLGISSA------KVDAIGLEIVD 254

Query: 715 GYLEYSYDLGDGVVTIKF---SKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGS 771
           G + +  + G G +T  +   + + + DG  H++   +      L VD   V        
Sbjct: 255 GKVLFHVNNGAGRITATYQPRAARALCDGKWHTLQAHKSKHRIVLTVDGNSVRAESPHTH 314

Query: 772 QDVINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNIHIQNKHI 815
               +T   IY+GG P               G + N+ +     
Sbjct: 315 STSADTNDPIYVGGYPAHIKQNSLSSRASFRGCVRNLRLSRGSQ 358

>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus} Length = 383

 Score = 61.9 bits (150), Expect = 3e-10
 Identities = 19/112 (16%), Positives = 32/112 (28%), Gaps = 12/112 (10%)

Query: 60  MFVDGIGPFSGESQGAFQGLDLSELVYIGAVPDFGEIHPSAGFSNGFKGCVSRLKYNKTE 119
           M VDG    S    G    LD+   +Y+G +P           ++    C+  +  N  +
Sbjct: 119 MTVDGQESPSVTVVGKATTLDVERKLYLGGLPSHYRARNIGTITHSIPACIGEIMVNGQQ 178

Query: 120 FELFKMAVERVGVDSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSG 171
            +     +    VD C                        GY  +   G+  
Sbjct: 179 LDK-DRPLSASAVDRCYVVAQ--EGTFFEGS---------GYAALVKEGYKV 218

>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus} Length = 383

 Score = 46.5 bits (110), Expect = 3e-05
 Identities = 25/149 (16%), Positives = 51/149 (34%), Gaps = 21/149 (14%)

Query: 7   SRADGLPLQRYAEGN---VLRITNARLQ-----DSGKYKCEIQGHDSFRGSD----YVKL 54
           +  +G+ L   +       L I + ++       +G+     Q   +    D     ++ 
Sbjct: 231 TSKNGVLLGISSAKVDAIGLEIVDGKVLFHVNNGAGRITATYQPRAARALCDGKWHTLQA 290

Query: 55  NVER---MMFVDGIGPFSGESQGAFQGLDLSELVYIGAVPDFGEIHPSAGFSNGFKGCVS 111
           +  +   ++ VDG    +          D ++ +Y+G  P       S      F+GCV 
Sbjct: 291 HKSKHRIVLTVDGNSVRAESPHTHSTSADTNDPIYVGGYPA-HIKQNSLSSRASFRGCVR 349

Query: 112 RLKYNKTEFEL---FKMAVERVGV--DSC 135
            L+ ++           A +  GV   SC
Sbjct: 350 NLRLSRGSQVQSLDLSRAFDLQGVFPHSC 378

>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus} Length = 383

 Score = 44.6 bits (105), Expect = 1e-04
 Identities = 18/112 (16%), Positives = 35/112 (31%), Gaps = 7/112 (6%)

Query: 194 VDGAMKCLCPIGTAGKRCEQKIKILQPAFKHG-SYLAYPTP--KTMRKFKVSLRLNPRDV 250
           V+G         +A       +   +  F  G  Y A      K     +++L       
Sbjct: 174 VNGQQLDKDRPLSASAVDRCYVVAQEGTFFEGSGYAALVKEGYKVRLDLQITLEFRTTS- 232

Query: 251 RDGIILYSGQSDDGLGDFISLAIREKHMEFRFDTGSATPLYSNDAPAFNPVS 302
           ++G++L          D I L I +  + F  + G+     +    A   + 
Sbjct: 233 KNGVLLGIS---SAKVDAIGLEIVDGKVLFHVNNGAGRITATYQPRAARALC 281

>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A Length = 394

 Score =  115 bits (288), Expect = 1e-27
 Identities = 42/213 (19%), Positives = 77/213 (36%), Gaps = 15/213 (7%)

Query: 387 FTQKPLSYLALPTL-TDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLE 445
           F     S++A+    T      +IEL  +    +GL+ Y    N        DF +  L 
Sbjct: 38  FGLSRNSHIAIAFDDTKVKNRLTIELEVRTEAESGLLFYMARIN------HADFATVQLR 91

Query: 446 DGYPVFRFDVG--LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQ 503
           +G+P F +D+G           +   +W  + I++  +EG L V         +P +   
Sbjct: 92  NGFPYFSYDLGSGDTSTMIPTKINDGQWHKIKIVRVKQEGILYVDDAS-SQTISPKKA-D 149

Query: 504 VLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANIMDCS 563
           +L++   LY+GG  I + T  +   VT    GC+  + +  + +DL +    S ++  C 
Sbjct: 150 ILDVVGILYVGGLPINYTTRRIGP-VTYSLDGCVRNLHMEQAPVDL-DQPTSSFHVGTCF 207

Query: 564 DLESSPVCAPKPCQNYGICYPTDTSERGYNCSC 596
               S          +                 
Sbjct: 208 ANAESGTYF--DGTGFAKAVGGFKVGLDLLVEF 238

>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A Length = 394

 Score =  111 bits (279), Expect = 2e-26
 Identities = 42/190 (22%), Positives = 78/190 (41%), Gaps = 13/190 (6%)

Query: 627 TPDSYECLCSLGYAPPNCAKRVSIGSEVHFLGEGYVELKKELIEERRNEETIAFDFVTDD 686
            P      C     P         G         ++ +      + +N  TI  +  T+ 
Sbjct: 15  VPTMVHGPCVAESEPALLTGSKQFG----LSRNSHIAIAF-DDTKVKNRLTIELEVRTEA 69

Query: 687 KNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVN 746
           ++ LL +  + ++ +     F  V + NG+  +SYDLG G  +       +NDG  H + 
Sbjct: 70  ESGLLFYMARINHAD-----FATVQLRNGFPYFSYDLGSGDTSTM-IPTKINDGQWHKIK 123

Query: 747 VTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTP-NMDLMTGGRYVHPMSGLM 805
           + R+ + G L VD     +  SP   D+++  G +Y+GG P N      G   + + G +
Sbjct: 124 IVRVKQEGILYVDDASS-QTISPKKADILDVVGILYVGGLPINYTTRRIGPVTYSLDGCV 182

Query: 806 MNIHIQNKHI 815
            N+H++   +
Sbjct: 183 RNLHMEQAPV 192

>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A Length = 394

 Score =  108 bits (270), Expect = 3e-25
 Identities = 55/439 (12%), Positives = 106/439 (24%), Gaps = 85/439 (19%)

Query: 166 PPGFSGDRCSVLGEPCYPGACGDGSCQDVDGAMKCLCPIGTAGKRCEQKIKILQPAFKHG 225
           P             P        G C                           Q      
Sbjct: 2   PLASVPTPAFPFPVPTMVH----GPCVAESEPALLTGS--------------KQFGLSRN 43

Query: 226 SYLAYPTPKTM--RKFKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKHMEFRFD 283
           S++A     T    +  + L +       G++ Y  + +    DF ++ +R     F +D
Sbjct: 44  SHIAIAFDDTKVKNRLTIELEVRTEA-ESGLLFYMARINHA--DFATVQLRNGFPYFSYD 100

Query: 284 TGSATPLYSNDAP--------------------AFNPVSTKEAPYGSKITLTCNNDL--- 320
            GS                                +  S++         L     L   
Sbjct: 101 LGSGDTSTMIPTKINDGQWHKIKIVRVKQEGILYVDDASSQTISPKKADILDVVGILYVG 160

Query: 321 EAPVEYTWSKRSNGHVLPFGAFSR----ENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPS 376
             P+ YT  +         G        +  + L +  +S         +      +   
Sbjct: 161 GLPINYTTRRIGPVTYSLDGCVRNLHMEQAPVDLDQPTSSFHVGTCFANAESGTYFDGTG 220

Query: 377 ILLVTDSVPLFTQKPLSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGK 436
                                       L    E  F+ T   G+++            K
Sbjct: 221 FAKAVGGFK---------------VGLDLLVEFE--FRTTRPTGVLLGVSS-------QK 256

Query: 437 GDFVSFGLEDGYPVFRFDVG------LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGE 490
            D +   + D   +F  D G      +        +   +W  VT  K     +L V G 
Sbjct: 257 MDGMGIEMIDEKLMFHVDNGAGRFTAIYDAEIPGHMCNGQWHKVTAKKIKNRLELVVDGN 316

Query: 491 PLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLI 550
            +   S         +   P+++GG+          +     F GCI ++ +       +
Sbjct: 317 QVDAQSPNSASTS-ADTNDPVFVGGFP--GGLNQFGLTTNIRFRGCIRSLKLTKGTGKPL 373

Query: 551 NSAVDSANIMDCSDLESSP 569
              V+ A  ++   ++   
Sbjct: 374 --EVNFAKALELRGVQPVS 390

>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A Length = 394

 Score = 95.8 bits (238), Expect = 3e-21
 Identities = 27/168 (16%), Positives = 56/168 (33%), Gaps = 11/168 (6%)

Query: 654 VHFLGEGYVELKKELIEERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVV 713
            +F G G+ +       +   +  + F+F T     +LL             + + + ++
Sbjct: 214 TYFDGTGFAKAVGGF--KVGLDLLVEFEFRTTRPTGVLLGVSSQK------MDGMGIEMI 265

Query: 714 NGYLEYSYDLGDGVVTIKFS---KKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPG 770
           +  L +  D G G  T  +       + +G  H V   +I     L VD   V       
Sbjct: 266 DEKLMFHVDNGAGRFTAIYDAEIPGHMCNGQWHKVTAKKIKNRLELVVDGNQVDAQSPNS 325

Query: 771 SQDVINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNIHIQNKHISNI 818
           +    +T   +++GG P      G        G + ++ +       +
Sbjct: 326 ASTSADTNDPVFVGGFPGGLNQFGLTTNIRFRGCIRSLKLTKGTGKPL 373

>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A Length = 394

 Score = 53.9 bits (129), Expect = 1e-07
 Identities = 19/110 (17%), Positives = 32/110 (29%), Gaps = 21/110 (19%)

Query: 60  MFVDGIGPFSGESQGAFQGLDLSELVYIGAVPDFGEIHPSAGFSNGFKGCVSRLKYNKTE 119
           ++VD        S      LD+  ++Y+G +P           +    GCV  L   +  
Sbjct: 133 LYVDDASS-QTISPKKADILDVVGILYVGGLPINYTTRRIGPVTYSLDGCVRNLHMEQAP 191

Query: 120 FELFKMAVERVGVDSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGF 169
            +L                   +  +  + G C   A     T     GF
Sbjct: 192 VDL------------------DQPTSSFHVGTCFANAES--GTYFDGTGF 221

>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A Length = 394

 Score = 48.5 bits (115), Expect = 6e-06
 Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 10/93 (10%)

Query: 52  VKLNVER---MMFVDGIGPFSGESQGAFQGLDLSELVYIGAVPDFGEIHPSAGFSNGFKG 108
           V     +    + VDG    +     A    D ++ V++G  P  G        +  F+G
Sbjct: 300 VTAKKIKNRLELVVDGNQVDAQSPNSASTSADTNDPVFVGGFPG-GLNQFGLTTNIRFRG 358

Query: 109 CVSRLKYNKTEFEL----FKMAVERVGV--DSC 135
           C+  LK  K   +     F  A+E  GV   SC
Sbjct: 359 CIRSLKLTKGTGKPLEVNFAKALELRGVQPVSC 391

>1f5f_A SHBG, sex hormone-binding globulin; jellyroll, signaling protein; HET: DHT; 1.70A {Homo sapiens} SCOP: b.29.1.4 PDB: 1lhw_A* 1lho_A* 1lhn_A* 1lhv_A* 1lhu_A* Length = 205

 Score =  107 bits (269), Expect = 9e-27
 Identities = 33/175 (18%), Positives = 58/175 (33%), Gaps = 13/175 (7%)

Query: 387 FTQKPLSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLED 446
             Q+P++ +            S     +  D  G+I Y   +       K D+   GL D
Sbjct: 22  PGQEPIAVMTFDLTKITK--TSSSFEVRTWDPEGVIFYGDTNP------KDDWFMLGLRD 73

Query: 447 GYPVFRFDVG--LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSV-GGEPLIVGSTPGEKLQ 503
           G P  +       + + +   L    W  V +  +     L V G E L +    G    
Sbjct: 74  GRPEIQLHNHWAQLTVGAGPRLDDGRWHQVEVKMEGDSVLLEVDGEEVLRLRQVSGPLTS 133

Query: 504 VLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAVDSAN 558
             +    + LGG  +     +L + +     GC+     L  + ++  SA  S  
Sbjct: 134 KRHPIMRIALGG--LLFPASNLRLPLVPALDGCLRRDSWLDKQAEISASAPTSLR 186

>1f5f_A SHBG, sex hormone-binding globulin; jellyroll, signaling protein; HET: DHT; 1.70A {Homo sapiens} SCOP: b.29.1.4 PDB: 1lhw_A* 1lho_A* 1lhn_A* 1lhv_A* 1lhu_A* Length = 205

 Score = 98.4 bits (245), Expect = 1e-23
 Identities = 28/171 (16%), Positives = 56/171 (32%), Gaps = 10/171 (5%)

Query: 656 FLGEGYVELKKELIEERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNG 715
              E    +  +L +  +   + +F+  T D   ++ +            ++  + + +G
Sbjct: 22  PGQEPIAVMTFDLTKITKT--SSSFEVRTWDPEGVIFYGDTNP-----KDDWFMLGLRDG 74

Query: 716 YLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVD--SVIVGKGESPGSQD 773
             E         +T+  +   ++DG  H V V        LEVD   V+  +  S     
Sbjct: 75  RPEIQLHNHWAQLTVG-AGPRLDDGRWHQVEVKMEGDSVLLEVDGEEVLRLRQVSGPLTS 133

Query: 774 VINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNIHIQNKHISNIGSSASS 824
             +    I LGG            V  + G +      +K      S+ +S
Sbjct: 134 KRHPIMRIALGGLLFPASNLRLPLVPALDGCLRRDSWLDKQAEISASAPTS 184

>1f5f_A SHBG, sex hormone-binding globulin; jellyroll, signaling protein; HET: DHT; 1.70A {Homo sapiens} SCOP: b.29.1.4 PDB: 1lhw_A* 1lho_A* 1lhn_A* 1lhv_A* 1lhu_A* Length = 205

 Score = 48.0 bits (114), Expect = 3e-06
 Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 4/70 (5%)

Query: 219 QPAFKHGSYLAYPTPKTMRKFKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKHM 278
            P  +  + + +   K + K   S  +   D  +G+I Y   +     D+  L +R+   
Sbjct: 21  GPGQEPIAVMTFDLTK-ITKTSSSFEVRTWD-PEGVIFYGDTNPKD--DWFMLGLRDGRP 76

Query: 279 EFRFDTGSAT 288
           E +     A 
Sbjct: 77  EIQLHNHWAQ 86

>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium, cell adhesion, EGF-like domain, glycoprotein, membrane, metal- binding; 1.70A {Mus musculus} PDB: 2vh8_C 2xb6_C* 2wqz_C* 1c4r_A 3bop_A 3mw4_A* Length = 178

 Score =  106 bits (266), Expect = 1e-26
 Identities = 35/182 (19%), Positives = 72/182 (39%), Gaps = 16/182 (8%)

Query: 651 GSEVHFL-GEGYVELK-KELIEERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFI 708
           GS   F  G G +  K           + +A  F T  K A+L+     S       +++
Sbjct: 4   GSTYIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLG----DYL 59

Query: 709 AVAVVNGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSV-IVGKGE 767
            + +  G +   +++G   + I+ S   +NDG  H V  TR     +L+VDS  ++ +  
Sbjct: 60  ELHIHQGKIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYP 119

Query: 768 SPGSQDVINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNIHIQNKHISNIGSSASSGLH 827
           +     + N++  I +GG              P  G +  ++     + N+ +   + + 
Sbjct: 120 AGRQLTIFNSQATIIIGGKEQG---------QPFQGQLSGLYYNGLKVLNMAAENDANIA 170

Query: 828 VM 829
           ++
Sbjct: 171 IV 172

>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium, cell adhesion, EGF-like domain, glycoprotein, membrane, metal- binding; 1.70A {Mus musculus} PDB: 2vh8_C 2xb6_C* 2wqz_C* 1c4r_A 3bop_A 3mw4_A* Length = 178

 Score = 89.9 bits (223), Expect = 6e-21
 Identities = 30/173 (17%), Positives = 64/173 (36%), Gaps = 20/173 (11%)

Query: 392 LSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVF 451
           ++Y   P    +     + + F       +++    S+     G GD++   +  G    
Sbjct: 16  ITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSS-----GLGDYLELHIHQGKIGV 70

Query: 452 RFDVG---LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLR 508
           +F+VG   + +  S   +   ++ VV   +      L V   P+I     G +L + N +
Sbjct: 71  KFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQ 130

Query: 509 TPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSE-LDLINSAVDSANIM 560
             + +GG            E  + F G +S +   G + L++      +  I+
Sbjct: 131 ATIIIGG-----------KEQGQPFQGQLSGLYYNGLKVLNMAAENDANIAIV 172

>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium, cell adhesion, EGF-like domain, glycoprotein, membrane, metal- binding; 1.70A {Mus musculus} PDB: 2vh8_C 2xb6_C* 2wqz_C* 1c4r_A 3bop_A 3mw4_A* Length = 178

 Score = 47.6 bits (113), Expect = 2e-06
 Identities = 15/82 (18%), Positives = 34/82 (41%), Gaps = 6/82 (7%)

Query: 222 FKHGSYLAYPTP----KTMRKFKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKH 277
            K G  + Y  P     + R  ++++  +    ++ +++    S  GLGD++ L I +  
Sbjct: 10  SKGGGQITYKWPPNDRPSTRADRLAIGFSTV-QKEAVLVRVD-SSSGLGDYLELHIHQGK 67

Query: 278 MEFRFDTGSATPLYSNDAPAFN 299
           +  +F+ G+            N
Sbjct: 68  IGVKFNVGTDDIAIEESNAIIN 89

>2r16_A Neurexin-1-alpha; beta-sandwich, cell adhesion, splicing; 1.04A {Bos taurus} Length = 182

 Score =  106 bits (266), Expect = 1e-26
 Identities = 26/173 (15%), Positives = 62/173 (35%), Gaps = 10/173 (5%)

Query: 651 GSEVHFLGEGYVELKKELIEERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAV 710
            + + + G  +++++   +      E ++  F +     +L+             + + +
Sbjct: 5   ATVLSYDGSMFMKIQL-PVVMHTEAEDVSLRFRSQRAYGILMATTSRD-----SADTLRL 58

Query: 711 AVVNGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPG 770
            +  G ++ + +LG G  T+ F+   +ND   H+V V R  K   L VD      G+  G
Sbjct: 59  ELDAGRVKLTVNLGKGPETL-FAGYNLNDNEWHTVRVVRRGKSLKLTVDDQQAMTGQMAG 117

Query: 771 SQDVINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNIHIQNKHISNIGSSAS 823
               +    NI  G       ++         G + ++        ++  +  
Sbjct: 118 DHTRLEF-HNIETGIITERRYLSSVP--SNFIGHLQSLTFNGMAYIDLCKNGD 167

>2r16_A Neurexin-1-alpha; beta-sandwich, cell adhesion, splicing; 1.04A {Bos taurus} Length = 182

 Score = 99.2 bits (247), Expect = 5e-24
 Identities = 34/200 (17%), Positives = 67/200 (33%), Gaps = 26/200 (13%)

Query: 382 DSVPLFTQKPLSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVS 441
            +V  +       + LP +        + L F+     G++M T        +   D + 
Sbjct: 5   ATVLSYDGSMFMKIQLPVVMHTE-AEDVSLRFRSQRAYGILMATTS------RDSADTLR 57

Query: 442 FGLEDGYPVFRFDVG--LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPG 499
             L+ G      ++G     L +   L  +EW  V +++  K  KL+V  +  + G   G
Sbjct: 58  LELDAGRVKLTVNLGKGPETLFAGYNLNDNEWHTVRVVRRGKSLKLTVDDQQAMTGQMAG 117

Query: 500 EKLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSE-LDLINSAVDSAN 558
           +  + L     +  G              V   F G + ++   G   +DL  +      
Sbjct: 118 DHTR-LEF-HNIETGII----TERRYLSSVPSNFIGHLQSLTFNGMAYIDLCKNG----- 166

Query: 559 IMDCSDLESSPVCAPKPCQN 578
                D++   + A    +N
Sbjct: 167 -----DIDYCELNARFGFRN 181

>2r16_A Neurexin-1-alpha; beta-sandwich, cell adhesion, splicing; 1.04A {Bos taurus} Length = 182

 Score = 51.0 bits (122), Expect = 2e-07
 Identities = 12/79 (15%), Positives = 26/79 (32%), Gaps = 7/79 (8%)

Query: 60  MFVDGIGPFSGESQGAFQGLDLSELVYIGAVPDFGEIHPSAGFSNGFKGCVSRLKYNKTE 119
           + VD     +G+  G    L+   +   G + +       +   + F G +  L +N   
Sbjct: 103 LTVDDQQAMTGQMAGDHTRLEFHNI-ETGIITER---RYLSSVPSNFIGHLQSLTFN--G 156

Query: 120 FELFKMAVERVGVDSCNTC 138
                +  +   +D C   
Sbjct: 157 MAYIDLC-KNGDIDYCELN 174

>2r16_A Neurexin-1-alpha; beta-sandwich, cell adhesion, splicing; 1.04A {Bos taurus} Length = 182

 Score = 47.2 bits (112), Expect = 4e-06
 Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 5/69 (7%)

Query: 220 PAFKHGSYLAYPTPKTMRK--FKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKH 277
            ++    ++    P  M      VSLR   +    GI++ +   D    D + L +    
Sbjct: 8   LSYDGSMFMKIQLPVVMHTEAEDVSLRFRSQR-AYGILMATTSRDSA--DTLRLELDAGR 64

Query: 278 MEFRFDTGS 286
           ++   + G 
Sbjct: 65  VKLTVNLGK 73

>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein, vitamin K-dependent protein, AXL/SKY/MER ligand, laminin G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4 b.29.1.4 PDB: 2c5d_A* Length = 422

 Score =  112 bits (280), Expect = 2e-26
 Identities = 40/242 (16%), Positives = 75/242 (30%), Gaps = 32/242 (13%)

Query: 593 NCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDSYECLCSLGYAPPNCAKRVSIGS 652
              C  G  G    ++ + C     C    + K     Y                     
Sbjct: 3   LAHCD-GRGGLKLSQDMDTCEDILPCVPFSVAKSVKSLYLGRM----------------- 44

Query: 653 EVHFLGEGYVELKKELIEERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAV 712
              F G   + L+ + ++  R      FDF T D   +LL+ G           +I +A+
Sbjct: 45  ---FSGTPVIRLRFKRLQPTRL--VAEFDFRTFDPEGILLFAGGHQ-----DSTWIVLAL 94

Query: 713 VNGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQ 772
             G LE              S   +N G+  +++V  + +   ++V+   V K    G  
Sbjct: 95  RAGRLELQLRYNGVGRVTS-SGPVINHGMWQTISVEELARNLVIKVNRDAVMKIAVAGDL 153

Query: 773 ---DVINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNIHIQNKHISNIGSSASSGLHVM 829
              +      N+ +GG P  +          + G M + +  N   + I  +      + 
Sbjct: 154 FQPERGLYHLNLTVGGIPFHEKDLVQPINPRLDGCMRSWNWLNGEDTTIQETVKVNTRMQ 213

Query: 830 PW 831
            +
Sbjct: 214 CF 215

>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein, vitamin K-dependent protein, AXL/SKY/MER ligand, laminin G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4 b.29.1.4 PDB: 2c5d_A* Length = 422

 Score =  108 bits (270), Expect = 3e-25
 Identities = 30/202 (14%), Positives = 61/202 (30%), Gaps = 20/202 (9%)

Query: 387 FTQKPLSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLED 446
           F+  P+  L    L         E  F+  D  G++++ G            ++   L  
Sbjct: 45  FSGTPVIRLRFKRL--QPTRLVAEFDFRTFDPEGILLFAGGHQ------DSTWIVLALRA 96

Query: 447 GYPVFRFDVG--LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGE--KL 502
           G    +        V  S   +    W  +++ +  +   + V  + ++  +  G+  + 
Sbjct: 97  GRLELQLRYNGVGRVTSSGPVINHGMWQTISVEELARNLVIKVNRDAVMKIAVAGDLFQP 156

Query: 503 QVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANIMDC 562
           +       L +GG  I      L   +     GC+ + + L  E   I   V     M C
Sbjct: 157 ERGLYHLNLTVGG--IPFHEKDLVQPINPRLDGCMRSWNWLNGEDTTIQETVKVNTRMQC 214

Query: 563 SDLESSPVCAPKPCQNYGICYP 584
                      +     G  + 
Sbjct: 215 FS------VTERGSFYPGSGFA 230

>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein, vitamin K-dependent protein, AXL/SKY/MER ligand, laminin G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4 b.29.1.4 PDB: 2c5d_A* Length = 422

 Score = 98.3 bits (244), Expect = 6e-22
 Identities = 63/429 (14%), Positives = 124/429 (28%), Gaps = 60/429 (13%)

Query: 171 GDRCSVLGEPCYPGACGDGSCQDVDGAMKCLCPIGTAGKRCEQKIKILQPAFKHGSYLAY 230
                  G      +    +C+D+       C   +  K  +        +      L +
Sbjct: 1   APLAHCDGRGGLKLSQDMDTCEDI-----LPCVPFSVAKSVKSLYLGRMFSGTPVIRLRF 55

Query: 231 PTPKTMRKFKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKHMEFRFDTGSATPL 290
              +   +          D  +GI+L++G   D    +I LA+R   +E +        +
Sbjct: 56  KRLQP-TRLVAEFDFRTFD-PEGILLFAGGHQDS--TWIVLALRAGRLELQLRYNGVGRV 111

Query: 291 YSNDAP----AFNPVSTKEAPYGSKITLTCNND----LEAPVEYTWSKRSNGHV------ 336
            S+        +  +S +E      + +  N D    +    +    +R   H+      
Sbjct: 112 TSSGPVINHGMWQTISVEE--LARNLVIKVNRDAVMKIAVAGDLFQPERGLYHLNLTVGG 169

Query: 337 LPFGAFSRENT-----------LTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVP 385
           +PF                         +++     V   +                S  
Sbjct: 170 IPFHEKDLVQPINPRLDGCMRSWNWLNGEDTTIQETVKVNTRMQCFSVTERGSFYPGSGF 229

Query: 386 LFTQKPLSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLE 445
            F         L   T++     +    +P    G++      +      +   +S  L 
Sbjct: 230 AFYSLDYMRTPLDVGTESTWEVEVVAHIRPAADTGVLFALWAPD-----LRAVPLSVALV 284

Query: 446 DGYPVFRFDVGLVVLRSKVTLVPH--------EWVVVTIIKDFKEGKLSVGGEPLIVGST 497
           D +   +    LVVL  + T +          +  VVT+     E  L V G       +
Sbjct: 285 DYHSTKKLKKQLVVLAVEHTALALMEIKVCDGQEHVVTVSLRDGEATLEVDGTRGQSEVS 344

Query: 498 PGEKLQV-------LNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLI 550
             +  +        L      + GG       P  S  VT  + GC++ ++V    LDL 
Sbjct: 345 AAQLQERLAVLERHLRSPVLTFAGGLP---DVPVTSAPVTAFYRGCMT-LEVNRRLLDLD 400

Query: 551 NSAVDSANI 559
            +A   ++I
Sbjct: 401 EAAYKHSDI 409

>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein, vitamin K-dependent protein, AXL/SKY/MER ligand, laminin G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4 b.29.1.4 PDB: 2c5d_A* Length = 422

 Score = 60.2 bits (145), Expect = 1e-09
 Identities = 32/218 (14%), Positives = 66/218 (30%), Gaps = 20/218 (9%)

Query: 612 CMKGDVCKNGGMCKVTPDSYECLCSLGYAPPNCAKRVSIGSEVHFLGEGYVELKKELIEE 671
           CM+       G      ++ +    +             GS   F    Y+    ++  E
Sbjct: 188 CMR-SWNWLNGEDTTIQETVKVNTRMQCFSVTERGSFYPGSGFAFYSLDYMRTPLDVGTE 246

Query: 672 RRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVV--- 728
              E  +           +L     P  +       ++VA+V+ +          V+   
Sbjct: 247 STWEVEVVAHIRPAADTGVLFALWAPDLR----AVPLSVALVDYHSTKKLKKQLVVLAVE 302

Query: 729 --TIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGS--------QDVINTR 778
              +   +  V DG +H V V+  +   +LEVD        S           +  + + 
Sbjct: 303 HTALALMEIKVCDGQEHVVTVSLRDGEATLEVDGTRGQSEVSAAQLQERLAVLERHLRSP 362

Query: 779 GNIYLGGTPNMDLMTGGRYVHPMSGLMMNIHIQNKHIS 816
              + GG P++ + T         G  M + +  + + 
Sbjct: 363 VLTFAGGLPDVPV-TSAPVTAFYRGC-MTLEVNRRLLD 398

>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein, vitamin K-dependent protein, AXL/SKY/MER ligand, laminin G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4 b.29.1.4 PDB: 2c5d_A* Length = 422

 Score = 45.6 bits (107), Expect = 5e-05
 Identities = 9/90 (10%), Positives = 22/90 (24%), Gaps = 4/90 (4%)

Query: 60  MFVDGIGPFSGESQGAFQGLDLSEL---VYIGAVPDFGEIHPSAGFSNGFKGCVSRLKYN 116
           + V+          G     +       + +G +P   +       +    GC+    + 
Sbjct: 137 IKVNRDAVMKIAVAGDLFQPERGLYHLNLTVGGIPFHEK-DLVQPINPRLDGCMRSWNWL 195

Query: 117 KTEFELFKMAVERVGVDSCNTCKSSKHNNC 146
             E    +  V+      C +         
Sbjct: 196 NGEDTTIQETVKVNTRMQCFSVTERGSFYP 225

>1d2s_A SHBG, sex hormone-binding globulin; steroid transport, laminin G-like domain, jellyroll, androgen binding protein (ABP); HET: DHT; 1.55A {Homo sapiens} SCOP: b.29.1.4 PDB: 1kdk_A* 1kdm_A* Length = 170

 Score =  104 bits (261), Expect = 4e-26
 Identities = 30/169 (17%), Positives = 56/169 (33%), Gaps = 17/169 (10%)

Query: 387 FTQKPLSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLED 446
             Q+P++ +            S     +  D  G+I Y   +       K D+   GL D
Sbjct: 10  PGQEPIAVMTFDLTKI--TKTSSSFEVRTWDPEGVIFYGDTNP------KDDWFMLGLRD 61

Query: 447 GYPVFRFDVG--LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQV 504
           G P  +       + + +   L    W  V +  +     L V GE ++           
Sbjct: 62  GRPEIQLHNHWAQLTVGAGPRLDDGRWHQVEVKMEGDSVLLEVDGEEVLRLRQVS----- 116

Query: 505 LNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSA 553
            +    + LGG  +     +L + +     GC+     L  + ++  SA
Sbjct: 117 GHPIMRIALGG--LLFPASNLRLPLVPALDGCLRRDSWLDKQAEISASA 163

>1d2s_A SHBG, sex hormone-binding globulin; steroid transport, laminin G-like domain, jellyroll, androgen binding protein (ABP); HET: DHT; 1.55A {Homo sapiens} SCOP: b.29.1.4 PDB: 1kdk_A* 1kdm_A* Length = 170

 Score = 95.0 bits (236), Expect = 9e-23
 Identities = 25/153 (16%), Positives = 50/153 (32%), Gaps = 10/153 (6%)

Query: 672 RRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIK 731
           +  + + +F+  T D   ++ +            ++  + + +G  E         +T+ 
Sbjct: 24  KITKTSSSFEVRTWDPEGVIFYGDTNP-----KDDWFMLGLRDGRPEIQLHNHWAQLTVG 78

Query: 732 FSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPNMDL 791
            +   ++DG  H V V        LEVD   V +          +    I LGG      
Sbjct: 79  -AGPRLDDGRWHQVEVKMEGDSVLLEVDGEEVLRLRQVS----GHPIMRIALGGLLFPAS 133

Query: 792 MTGGRYVHPMSGLMMNIHIQNKHISNIGSSASS 824
                 V  + G +      +K      S+ +S
Sbjct: 134 NLRLPLVPALDGCLRRDSWLDKQAEISASAPTS 166

>1d2s_A SHBG, sex hormone-binding globulin; steroid transport, laminin G-like domain, jellyroll, androgen binding protein (ABP); HET: DHT; 1.55A {Homo sapiens} SCOP: b.29.1.4 PDB: 1kdk_A* 1kdm_A* Length = 170

 Score = 53.4 bits (128), Expect = 3e-08
 Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 4/70 (5%)

Query: 219 QPAFKHGSYLAYPTPKTMRKFKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKHM 278
            P  +  + + +   K   K   S  +   D  +G+I Y   +     D+  L +R+   
Sbjct: 9   GPGQEPIAVMTFDLTKI-TKTSSSFEVRTWD-PEGVIFYGDTNPKD--DWFMLGLRDGRP 64

Query: 279 EFRFDTGSAT 288
           E +     A 
Sbjct: 65  EIQLHNHWAQ 74

>1d2s_A SHBG, sex hormone-binding globulin; steroid transport, laminin G-like domain, jellyroll, androgen binding protein (ABP); HET: DHT; 1.55A {Homo sapiens} SCOP: b.29.1.4 PDB: 1kdk_A* 1kdm_A* Length = 170

 Score = 40.3 bits (94), Expect = 6e-04
 Identities = 11/77 (14%), Positives = 23/77 (29%), Gaps = 7/77 (9%)

Query: 59  MMFVDGIGPFSGESQGAFQGLDLSELVYIGAVPDFGEIHPSAGFSNGFKGCVSRLKYNKT 118
           ++ VDG              + +     +G +      +          GC+ R  +   
Sbjct: 101 LLEVDGEEVLRLRQVSGHPIMRI----ALGGLLF-PASNLRLPLVPALDGCLRRDSWLDK 155

Query: 119 EFELFKMAVERVGVDSC 135
           + E+   A     + SC
Sbjct: 156 QAEI--SASAPTSLRSC 170

>2r1d_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 2.60A {Rattus norvegicus} SCOP: b.29.1.4 PDB: 3biw_E* Length = 226

 Score =  101 bits (252), Expect = 3e-24
 Identities = 33/197 (16%), Positives = 78/197 (39%), Gaps = 15/197 (7%)

Query: 635 CSLGYAPPNCAKRVSIGSEVHFLGEGYVELKKELIEERR-NEETIAFDFVTDDKNALLLW 693
            ++  +P +     +  + +   G G +  K    +      + +A  F T  K A+L+ 
Sbjct: 23  IAIYRSPASLRGGHAGTTYIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVR 82

Query: 694 NGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVTRINKF 753
               S       +++ + +  G +   +++G   + I+ S   +NDG  H V  TR    
Sbjct: 83  VDSSSGLG----DYLELHIHQGKIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGN 138

Query: 754 GSLEVDSV-IVGKGESPGSQDVINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNIHIQN 812
            +L+VDS  ++ +  +     + N++  I +GG              P  G +  ++   
Sbjct: 139 ATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKEQG---------QPFQGQLSGLYYNG 189

Query: 813 KHISNIGSSASSGLHVM 829
             + N+ +   + + ++
Sbjct: 190 LKVLNMAAENDANIAIV 206

>2r1d_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 2.60A {Rattus norvegicus} SCOP: b.29.1.4 PDB: 3biw_E* Length = 226

 Score = 90.5 bits (224), Expect = 1e-20
 Identities = 32/191 (16%), Positives = 69/191 (36%), Gaps = 21/191 (10%)

Query: 392 LSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVF 451
           ++Y   P    +     + + F       +++    S+     G GD++   +  G    
Sbjct: 50  ITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSS-----GLGDYLELHIHQGKIGV 104

Query: 452 RFDVG---LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLR 508
           +F+VG   + +  S   +   ++ VV   +      L V   P+I     G +L + N +
Sbjct: 105 KFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQ 164

Query: 509 TPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSE-LDLINSAVDSANIMDCSDLES 567
             + +GG            E  + F G +S +   G + L++      +  I+    L  
Sbjct: 165 ATIIIGG-----------KEQGQPFQGQLSGLYYNGLKVLNMAAENDANIAIVGNVRL-V 212

Query: 568 SPVCAPKPCQN 578
             V +    ++
Sbjct: 213 GEVPSSMTTES 223

>2r1d_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 2.60A {Rattus norvegicus} SCOP: b.29.1.4 PDB: 3biw_E* Length = 226

 Score = 43.1 bits (101), Expect = 1e-04
 Identities = 14/69 (20%), Positives = 33/69 (47%), Gaps = 6/69 (8%)

Query: 222 FKHGSYLAYPTP----KTMRKFKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKH 277
            K G  + Y  P     + R  ++++  +    ++ +++    S  GLGD++ L I +  
Sbjct: 44  SKGGGQITYKWPPNDRPSTRADRLAIGFSTV-QKEAVLVRVD-SSSGLGDYLELHIHQGK 101

Query: 278 MEFRFDTGS 286
           +  +F+ G+
Sbjct: 102 IGVKFNVGT 110

>2r1b_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 1.72A {Rattus norvegicus} PDB: 3mw2_A* 3b3q_E* 3mw3_A* Length = 220

 Score = 89.4 bits (221), Expect = 2e-20
 Identities = 36/156 (23%), Positives = 62/156 (39%), Gaps = 11/156 (7%)

Query: 651 GSEVHFL-GEGYVELK-KELIEERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFI 708
           G+   F  G G +  K           + +A  F T  K A+L+     S       +++
Sbjct: 10  GTTYIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLG----DYL 65

Query: 709 AVAVVNGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGES 768
            + +  G +   +++G   + I+ S   +NDG  H V  TR     +L+VDS  V +   
Sbjct: 66  ELHIHQGKIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYP 125

Query: 769 PGSQD-----VINTRGNIYLGGTPNMDLMTGGRYVH 799
            G+ D     +   R    LG   +  L+  GR + 
Sbjct: 126 AGNNDNERLAIARQRIPYRLGRVVDEWLLDKGRQLT 161

>2r1b_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 1.72A {Rattus norvegicus} PDB: 3mw2_A* 3b3q_E* 3mw3_A* Length = 220

 Score = 75.9 bits (186), Expect = 1e-15
 Identities = 30/173 (17%), Positives = 61/173 (35%), Gaps = 27/173 (15%)

Query: 392 LSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVF 451
           ++Y   P    +     + + F       +++    S+     G GD++   +  G    
Sbjct: 22  ITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSS-----GLGDYLELHIHQGKIGV 76

Query: 452 RFDVG---LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPG----EKLQV 504
           +F+VG   + +  S   +   ++ VV   +      L V   P+I     G    E+L +
Sbjct: 77  KFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGNNDNERLAI 136

Query: 505 LNLRTPLYLGG------------YNIYHVTPSLSV---EVTEGFHGCISTIDV 542
              R P  LG               I++   ++ +   E  + F G +S +  
Sbjct: 137 ARQRIPYRLGRVVDEWLLDKGRQLTIFNSQATIIIGGKEQGQPFQGQLSGLYY 189

>2r1b_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 1.72A {Rattus norvegicus} PDB: 3mw2_A* 3b3q_E* 3mw3_A* Length = 220

 Score = 44.0 bits (103), Expect = 8e-05
 Identities = 14/69 (20%), Positives = 33/69 (47%), Gaps = 6/69 (8%)

Query: 222 FKHGSYLAYPTPK----TMRKFKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKH 277
            K G  + Y  P     + R  ++++  +    ++ +++    S  GLGD++ L I +  
Sbjct: 16  SKGGGQITYKWPPNDRPSTRADRLAIGFSTV-QKEAVLVRVD-SSSGLGDYLELHIHQGK 73

Query: 278 MEFRFDTGS 286
           +  +F+ G+
Sbjct: 74  IGVKFNVGT 82

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135

 Score = 80.7 bits (200), Expect = 3e-18
 Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 11/89 (12%)

Query: 556 SANIMDCSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKG 615
           + ++ +CS           PC++ G C   +T    + C CL GY+G  CE + N C+  
Sbjct: 2   AQDVDECS-------LGANPCEHAGKC--INTLG-SFECQCLQGYTGPRCEIDVNECV-S 50

Query: 616 DVCKNGGMCKVTPDSYECLCSLGYAPPNC 644
           + C+N   C      ++C+C  GY   +C
Sbjct: 51  NPCQNDATCLDQIGEFQCICMPGYEGVHC 79

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135

 Score = 76.5 bits (189), Expect = 1e-16
 Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 4/74 (5%)

Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDS 630
           C   PCQN   C         + C C+ GY G HCE   + C     C + G C    + 
Sbjct: 48  CVSNPCQNDATCLDQIG---EFQCICMPGYEGVHCEVNTDECASSP-CLHNGRCLDKINE 103

Query: 631 YECLCSLGYAPPNC 644
           ++C C  G+    C
Sbjct: 104 FQCECPTGFTGHLC 117

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135

 Score = 73.0 bits (180), Expect = 1e-15
 Identities = 26/85 (30%), Positives = 35/85 (41%), Gaps = 7/85 (8%)

Query: 132 VDSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACG-DGS 190
           VD C    S   N C + G C +      + C C  G++G RC +    C    C  D +
Sbjct: 5   VDEC----SLGANPCEHAGKCINTLG--SFECQCLQGYTGPRCEIDVNECVSNPCQNDAT 58

Query: 191 CQDVDGAMKCLCPIGTAGKRCEQKI 215
           C D  G  +C+C  G  G  CE   
Sbjct: 59  CLDQIGEFQCICMPGYEGVHCEVNT 83

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135

 Score = 70.3 bits (173), Expect = 1e-14
 Identities = 27/81 (33%), Positives = 35/81 (43%), Gaps = 6/81 (7%)

Query: 136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACG-DGSCQDV 194
           N C S   N C N+  C D      + CIC PG+ G  C V  + C    C  +G C D 
Sbjct: 46  NECVS---NPCQNDATCLDQIG--EFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDK 100

Query: 195 DGAMKCLCPIGTAGKRCEQKI 215
               +C CP G  G  C+  +
Sbjct: 101 INEFQCECPTGFTGHLCQVDL 121

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135

 Score = 52.6 bits (127), Expect = 2e-08
 Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 4/52 (7%)

Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGD-VCKNG 621
           CA  PC + G C         + C C TG++G  C+ + +  +    +  N 
Sbjct: 86  CASSPCLHNGRCLDKIN---EFQCECPTGFTGHLCQVDLHHILDAQKMVWNH 134

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135

 Score = 48.8 bits (117), Expect = 4e-07
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 5/57 (8%)

Query: 136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGSCQ 192
           + C S   + C++NG C D      + C CP GF+G  C V             + +
Sbjct: 84  DECAS---SPCLHNGRCLDKIN--EFQCECPTGFTGHLCQVDLHHILDAQKMVWNHR 135

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... Length = 134

 Score = 77.7 bits (192), Expect = 4e-17
 Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 3/74 (4%)

Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDS 630
           C   PCQN G C   D     Y C+CL G+ G +CE         D       C    +S
Sbjct: 45  CETSPCQNQGKC--KDG-LGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNS 101

Query: 631 YECLCSLGYAPPNC 644
             C C+ GY   + 
Sbjct: 102 VVCSCARGYTLADN 115

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... Length = 134

 Score = 68.9 bits (169), Expect = 4e-14
 Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 7/83 (8%)

Query: 135 CNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCS-VLGEPCYPGACG-DGSCQ 192
            + C++   + C N G C+D      YTC C  GF G  C     + C       D  C 
Sbjct: 42  GDQCET---SPCQNQGKCKDGLG--EYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCH 96

Query: 193 DVDGAMKCLCPIGTAGKRCEQKI 215
           +   ++ C C  G       +  
Sbjct: 97  EEQNSVVCSCARGYTLADNGKAC 119

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... Length = 134

 Score = 63.8 bits (156), Expect = 2e-12
 Identities = 16/71 (22%), Positives = 23/71 (32%), Gaps = 4/71 (5%)

Query: 574 KPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDSYEC 633
           + C      Y      R             +  K+ + C +   C+N G CK     Y C
Sbjct: 10  RECMEETCSY---EEAREVFEDSDKTNEFWNKYKDGDQC-ETSPCQNQGKCKDGLGEYTC 65

Query: 634 LCSLGYAPPNC 644
            C  G+   NC
Sbjct: 66  TCLEGFEGKNC 76

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... Length = 134

 Score = 60.4 bits (147), Expect = 4e-11
 Identities = 16/71 (22%), Positives = 20/71 (28%), Gaps = 3/71 (4%)

Query: 146 CINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGAC-GDGSCQDVDGAMKCLCPI 204
           C+      + A                     G+ C    C   G C+D  G   C C  
Sbjct: 12  CMEETCSYEEAR--EVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLE 69

Query: 205 GTAGKRCEQKI 215
           G  GK CE   
Sbjct: 70  GFEGKNCELFT 80

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... Length = 134

 Score = 58.1 bits (141), Expect = 3e-10
 Identities = 10/55 (18%), Positives = 15/55 (27%), Gaps = 4/55 (7%)

Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCK 625
           C+         C+    S     CSC  GY+     K          C    + +
Sbjct: 84  CSLDNGDCDQFCHEEQNS---VVCSCARGYTLADNGKACIPTGP-YPCGKQTLER 134

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... Length = 134

 Score = 51.5 bits (124), Expect = 6e-08
 Identities = 9/50 (18%), Positives = 15/50 (30%), Gaps = 3/50 (6%)

Query: 144 NNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACG-DGSCQ 192
           +N   +  C +        C C  G++         P  P  CG     +
Sbjct: 87  DNGDCDQFCHEEQN--SVVCSCARGYTLADNGKACIPTGPYPCGKQTLER 134

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} Length = 143

 Score = 77.1 bits (190), Expect = 8e-17
 Identities = 31/94 (32%), Positives = 40/94 (42%), Gaps = 8/94 (8%)

Query: 558 NIMDCSDLESSPV---CAPKPCQNYGICYPTDTSER----GYNCSCLTGYSGDHCEKENN 610
            +   SD E       C P PC N G C  ++        GY C C  G++G HC+   N
Sbjct: 39  VVEVASDEEEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNIN 98

Query: 611 MCMKGDVCKNGGMCKVTPDSYECLCSLGYAPPNC 644
            C     CKNGG+C     +Y C C   +   NC
Sbjct: 99  ECEVEP-CKNGGICTDLVANYSCECPGEFMGRNC 131

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} Length = 143

 Score = 75.5 bits (186), Expect = 3e-16
 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 19/92 (20%)

Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDV-----------CK 619
           C P PC+N GIC P   ++  ++C C  G++  +C     +    +            C 
Sbjct: 3   CDPNPCENGGICLP-GLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCH 61

Query: 620 NGGMCKVTP-------DSYECLCSLGYAPPNC 644
           NGG C+++          Y C C  G+   +C
Sbjct: 62  NGGTCEISEAYRGDTFIGYVCKCPRGFNGIHC 93

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} Length = 143

 Score = 69.4 bits (170), Expect = 4e-14
 Identities = 26/86 (30%), Positives = 32/86 (37%), Gaps = 9/86 (10%)

Query: 136 NTCKSSKHNNCINNGLCQDAATRI-----GYTCICPPGFSGDRCSVLGEPCYPGAC-GDG 189
             C     N C N G C+ +         GY C CP GF+G  C      C    C   G
Sbjct: 53  GPCTP---NPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEPCKNGG 109

Query: 190 SCQDVDGAMKCLCPIGTAGKRCEQKI 215
            C D+     C CP    G+ C+ K 
Sbjct: 110 ICTDLVANYSCECPGEFMGRNCQYKG 135

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} Length = 143

 Score = 65.1 bits (159), Expect = 1e-12
 Identities = 23/98 (23%), Positives = 32/98 (32%), Gaps = 23/98 (23%)

Query: 138 CKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACG---------- 187
           C  +    C N G+C        ++C CP GF+   CS + E                  
Sbjct: 3   CDPNP---CENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNP 59

Query: 188 ---DGSCQ-------DVDGAMKCLCPIGTAGKRCEQKI 215
               G+C+       D      C CP G  G  C+  I
Sbjct: 60  CHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNI 97

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} Length = 143

 Score = 48.6 bits (116), Expect = 6e-07
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMC 612
           C  +PC+N GIC  TD     Y+C C   + G +C+ +    
Sbjct: 100 CEVEPCKNGGIC--TDL-VANYSCECPGEFMGRNCQYKGGGH 138

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} Length = 143

 Score = 46.6 bits (111), Expect = 3e-06
 Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 5/47 (10%)

Query: 136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCY 182
           N C+      C N G+C D      Y+C CP  F G  C   G   +
Sbjct: 98  NECEV---EPCKNGGICTDLVA--NYSCECPGEFMGRNCQYKGGGHH 139

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195

 Score = 78.3 bits (193), Expect = 1e-16
 Identities = 24/78 (30%), Positives = 30/78 (38%), Gaps = 3/78 (3%)

Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDS 630
           C   PCQN G C   D     Y C+CL G+ G +CE         D       C    +S
Sbjct: 45  CETSPCQNQGKC--KDG-LGEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNS 101

Query: 631 YECLCSLGYAPPNCAKRV 648
             C C+ GY   +  K  
Sbjct: 102 VVCSCARGYTLADNGKAC 119

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195

 Score = 69.8 bits (171), Expect = 8e-14
 Identities = 14/74 (18%), Positives = 21/74 (28%), Gaps = 4/74 (5%)

Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDS 630
           C+         C+    S     CSC  GY+     K          C    + +     
Sbjct: 84  CSLDNGDCDQFCHEEQNS---VVCSCARGYTLADNGKACIPTGP-YPCGKQTLERRKRSV 139

Query: 631 YECLCSLGYAPPNC 644
            +   S G AP + 
Sbjct: 140 AQATSSSGEAPDSI 153

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195

 Score = 69.0 bits (169), Expect = 2e-13
 Identities = 20/83 (24%), Positives = 31/83 (37%), Gaps = 7/83 (8%)

Query: 135 CNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSV-LGEPCYPGACG-DGSCQ 192
            + C++   + C N G C+D      YTC C  GF G  C +   + C       D  C 
Sbjct: 42  GDQCET---SPCQNQGKCKDGLG--EYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCH 96

Query: 193 DVDGAMKCLCPIGTAGKRCEQKI 215
           +   ++ C C  G       +  
Sbjct: 97  EEQNSVVCSCARGYTLADNGKAC 119

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195

 Score = 62.5 bits (152), Expect = 3e-11
 Identities = 10/74 (13%), Positives = 18/74 (24%), Gaps = 4/74 (5%)

Query: 144 NNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACG-DGSCQDVDGAMKCLC 202
           +N   +  C +        C C  G++         P  P  CG     +      +   
Sbjct: 87  DNGDCDQFCHEEQN--SVVCSCARGYTLADNGKACIPTGPYPCGKQTLERRKRSVAQATS 144

Query: 203 PIG-TAGKRCEQKI 215
             G        +  
Sbjct: 145 SSGEAPDSITWKPY 158

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195

 Score = 62.1 bits (151), Expect = 4e-11
 Identities = 15/74 (20%), Positives = 22/74 (29%), Gaps = 9/74 (12%)

Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDS 630
           C  + C                           +  K+ + C +   C+N G CK     
Sbjct: 12  CMEETCSYEEAR--------EVFEDSDKTNEFWNKYKDGDQC-ETSPCQNQGKCKDGLGE 62

Query: 631 YECLCSLGYAPPNC 644
           Y C C  G+   NC
Sbjct: 63  YTCTCLEGFEGKNC 76

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195

 Score = 55.9 bits (135), Expect = 5e-09
 Identities = 16/71 (22%), Positives = 20/71 (28%), Gaps = 3/71 (4%)

Query: 146 CINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACG-DGSCQDVDGAMKCLCPI 204
           C+      + A                     G+ C    C   G C+D  G   C C  
Sbjct: 12  CMEETCSYEEAR--EVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLE 69

Query: 205 GTAGKRCEQKI 215
           G  GK CE   
Sbjct: 70  GFEGKNCELFT 80

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195

 Score = 47.8 bits (114), Expect = 3e-06
 Identities = 8/67 (11%), Positives = 16/67 (23%), Gaps = 5/67 (7%)

Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGD-HCEKENNMCMKGDVCKNGGMCKVTPD 629
             P PC    +     +       +  +G + D    K  +     D  +N         
Sbjct: 122 TGPYPCGKQTLERRKRS---VAQATSSSGEAPDSITWKPYDAAD-LDPTENPFDLLDFNQ 177

Query: 630 SYECLCS 636
           +      
Sbjct: 178 TQPERGD 184

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A Length = 169

 Score = 75.9 bits (187), Expect = 4e-16
 Identities = 30/75 (40%), Positives = 37/75 (49%), Gaps = 7/75 (9%)

Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVT-PD 629
           C P P   +GIC         + C C T + G  C+K+ N C     C NGG C  T PD
Sbjct: 99  CIPHPGCVHGIC------NEPWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPD 152

Query: 630 SYECLCSLGYAPPNC 644
            Y+C C  GY+ PNC
Sbjct: 153 KYQCSCPEGYSGPNC 167

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A Length = 169

 Score = 63.5 bits (155), Expect = 8e-12
 Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 11/81 (13%)

Query: 135 CNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSV-LGEPCYPGAC-GDGSCQ 192
           C+ C     +    +G+C +      + C+C   + G  C   L        C   G+C 
Sbjct: 96  CDKCIP---HPGCVHGICNE-----PWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCS 147

Query: 193 DVD-GAMKCLCPIGTAGKRCE 212
           +      +C CP G +G  CE
Sbjct: 148 NTGPDKYQCSCPEGYSGPNCE 168

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A Length = 169

 Score = 62.8 bits (153), Expect = 2e-11
 Identities = 14/79 (17%), Positives = 22/79 (27%), Gaps = 12/79 (15%)

Query: 570 VCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPD 629
           +       ++G        E     +C   Y G  C K    C   D       C     
Sbjct: 1   MRGSHHHHHHGSI------EGRSAVTCDDYYYGFGCNKF---CRPRDDFFGHYACD---Q 48

Query: 630 SYECLCSLGYAPPNCAKRV 648
           +    C  G+  P C + +
Sbjct: 49  NGNKTCMEGWMGPECNRAI 67

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A Length = 169

 Score = 60.1 bits (146), Expect = 1e-10
 Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 11/82 (13%)

Query: 568 SPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVT 627
           +  C P+              ++  N +C+ G+ G  C +              G CK  
Sbjct: 31  NKFCRPRDDFFGHYAC-----DQNGNKTCMEGWMGPECNRAICRQ---GCSPKHGSCK-- 80

Query: 628 PDSYECLCSLGYAPPNCAKRVS 649
               +C C  G+    C K + 
Sbjct: 81  -LPGDCRCQYGWQGLYCDKCIP 101

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A Length = 169

 Score = 59.3 bits (144), Expect = 2e-10
 Identities = 14/79 (17%), Positives = 28/79 (35%), Gaps = 16/79 (20%)

Query: 567 SSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEK-ENNMCMKGDVCKNGGMCK 625
           +  +C       +G C      +   +C C  G+ G +C+K   +      +C       
Sbjct: 64  NRAICRQGCSPKHGSC------KLPGDCRCQYGWQGLYCDKCIPHPGCVHGICN------ 111

Query: 626 VTPDSYECLCSLGYAPPNC 644
              + ++CLC   +    C
Sbjct: 112 ---EPWQCLCETNWGGQLC 127

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A Length = 169

 Score = 57.0 bits (138), Expect = 1e-09
 Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 18/86 (20%)

Query: 133 DSCNT--CKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGAC-GDG 189
             CN   C+         +G C+         C C  G+ G  C    + C P      G
Sbjct: 61  PECNRAICRQ---GCSPKHGSCKL-----PGDCRCQYGWQGLYC----DKCIPHPGCVHG 108

Query: 190 SCQDVDGAMKCLCPIGTAGKRCEQKI 215
            C +     +CLC     G+ C++ +
Sbjct: 109 ICNEPW---QCLCETNWGGQLCDKDL 131

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A Length = 169

 Score = 57.0 bits (138), Expect = 1e-09
 Identities = 16/83 (19%), Positives = 26/83 (31%), Gaps = 9/83 (10%)

Query: 144 NNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGSCQDVDGAMKCLCP 203
           ++  ++G  +           C   + G  C+    P            D +G     C 
Sbjct: 5   HHHHHHGSIEG-----RSAVTCDDYYYGFGCNKFCRPRDD--FFGHYACDQNG--NKTCM 55

Query: 204 IGTAGKRCEQKIKILQPAFKHGS 226
            G  G  C + I     + KHGS
Sbjct: 56  EGWMGPECNRAICRQGCSPKHGS 78

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A Length = 169

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCE 606
              +PC N G C  ++T    Y CSC  GYSG +CE
Sbjct: 135 GTHQPCLNGGTC--SNTGPDKYQCSCPEGYSGPNCE 168

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A Length = 169

 Score = 45.8 bits (109), Expect = 8e-06
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSV 176
           N C +  H  C+N G C +      Y C CP G+SG  C +
Sbjct: 132 NYCGT--HQPCLNGGTCSNTGPD-KYQCSCPEGYSGPNCEI 169

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ... Length = 142

 Score = 72.4 bits (178), Expect = 4e-15
 Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 8/78 (10%)

Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGG---MCKVT 627
           CA  PCQN G C   D   + Y C CL  + G +CE   +  +     +NGG    C   
Sbjct: 50  CASSPCQNGGSC--KDQ-LQSYICFCLPAFEGRNCETHKDDQLICV-NENGGCEQYCSDH 105

Query: 628 PDS-YECLCSLGYAPPNC 644
             +   C C  GY+    
Sbjct: 106 TGTKRSCRCHEGYSLLAD 123

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ... Length = 142

 Score = 67.7 bits (166), Expect = 1e-13
 Identities = 20/86 (23%), Positives = 24/86 (27%), Gaps = 10/86 (11%)

Query: 135 CNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSV-----LGEPCYPGACGDG 189
            + C S   + C N G C+D      Y C C P F G  C       L      G C   
Sbjct: 47  GDQCAS---SPCQNGGSCKDQLQ--SYICFCLPAFEGRNCETHKDDQLICVNENGGCEQY 101

Query: 190 SCQDVDGAMKCLCPIGTAGKRCEQKI 215
                     C C  G +        
Sbjct: 102 CSDHTGTKRSCRCHEGYSLLADGVSC 127

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ... Length = 142

 Score = 49.6 bits (119), Expect = 3e-07
 Identities = 11/57 (19%), Positives = 15/57 (26%), Gaps = 1/57 (1%)

Query: 135 CNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGSC 191
            +      + N      C D       +C C  G+S     V   P     CG    
Sbjct: 85  KDDQLICVNENGGCEQYCSDHTGT-KRSCRCHEGYSLLADGVSCTPTVEYPCGKIPI 140

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ... Length = 142

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 15/71 (21%), Positives = 20/71 (28%), Gaps = 3/71 (4%)

Query: 146 CINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGAC-GDGSCQDVDGAMKCLCPI 204
           C     C     R  +                G+ C    C   GSC+D   +  C C  
Sbjct: 17  CKE-EQCSFEEAREIFKD-AERTKLFWISYSDGDQCASSPCQNGGSCKDQLQSYICFCLP 74

Query: 205 GTAGKRCEQKI 215
              G+ CE   
Sbjct: 75  AFEGRNCETHK 85

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ... Length = 142

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 17/74 (22%), Positives = 24/74 (32%), Gaps = 9/74 (12%)

Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDS 630
           C  + C           +ER         +       + + C     C+NGG CK    S
Sbjct: 17  CKEEQCSFEEAREIFKDAERTK-----LFW---ISYSDGDQC-ASSPCQNGGSCKDQLQS 67

Query: 631 YECLCSLGYAPPNC 644
           Y C C   +   NC
Sbjct: 68  YICFCLPAFEGRNC 81

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ... Length = 142

 Score = 46.6 bits (111), Expect = 3e-06
 Identities = 10/55 (18%), Positives = 17/55 (30%), Gaps = 2/55 (3%)

Query: 571 CAPKPCQNYGIC-YPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMC 624
                 +N G   Y +D +    +C C  GYS           ++   C    + 
Sbjct: 88  QLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVE-YPCGKIPIL 141

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* Length = 146

 Score = 72.0 bits (177), Expect = 5e-15
 Identities = 21/82 (25%), Positives = 29/82 (35%), Gaps = 6/82 (7%)

Query: 135 CNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCY-PGACGDGSCQD 193
            + C+    N C+N GLC+D      Y C C  GF G  C +        G C       
Sbjct: 48  GDQCEP---NPCLNGGLCKDDIN--SYECWCQVGFEGKNCELDATCNIKNGRCKQFCKTG 102

Query: 194 VDGAMKCLCPIGTAGKRCEQKI 215
            D  + C C  G      ++  
Sbjct: 103 ADSKVLCSCTTGYRLAPDQKSC 124

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* Length = 146

 Score = 71.6 bits (176), Expect = 7e-15
 Identities = 23/75 (30%), Positives = 30/75 (40%), Gaps = 6/75 (8%)

Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDS 630
           C P PC N G+C   D     Y C C  G+ G +CE +    +     +    CK   DS
Sbjct: 51  CEPNPCLNGGLC--KD-DINSYECWCQVGFEGKNCELDATCNI--KNGRCKQFCKTGADS 105

Query: 631 -YECLCSLGYAPPNC 644
              C C+ GY     
Sbjct: 106 KVLCSCTTGYRLAPD 120

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* Length = 146

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 11/55 (20%), Positives = 17/55 (30%), Gaps = 3/55 (5%)

Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCK 625
           C  K  +    C     ++    CSC TGY     +K     +    C    +  
Sbjct: 88  CNIKNGRCKQFC--KTGADSKVLCSCTTGYRLAPDQKSCKPAVP-FPCGRVSVSH 139

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* Length = 146

 Score = 48.9 bits (117), Expect = 6e-07
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 590 RGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDSYECLCSLGYAPPNC 644
           R    +            + + C + + C NGG+CK   +SYEC C +G+   NC
Sbjct: 29  REVFENTEKTNEFWKQYVDGDQC-EPNPCLNGGLCKDDINSYECWCQVGFEGKNC 82

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* Length = 146

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 12/57 (21%), Positives = 16/57 (28%), Gaps = 1/57 (1%)

Query: 135 CNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGSC 191
           C    +    N      C+  A      C C  G+         +P  P  CG  S 
Sbjct: 82  CELDATCNIKNGRCKQFCKTGADS-KVLCSCTTGYRLAPDQKSCKPAVPFPCGRVSV 137

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* Length = 146

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 1/54 (1%)

Query: 163 CICPPGFSGDRCSVLGEPCYPGAC-GDGSCQDVDGAMKCLCPIGTAGKRCEQKI 215
                     +  V G+ C P  C   G C+D   + +C C +G  GK CE   
Sbjct: 33  ENTEKTNEFWKQYVDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCELDA 86

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* Length = 114

 Score = 65.9 bits (161), Expect = 3e-13
 Identities = 16/77 (20%), Positives = 26/77 (33%), Gaps = 4/77 (5%)

Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCM-KGDVCKNGGMCKVTPD 629
                C  +G C   D     ++C C +G+ G  C++E +      D       C     
Sbjct: 17  PCASLCCGHGTC--IDG-IGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTHYCLEEVG 73

Query: 630 SYECLCSLGYAPPNCAK 646
              C C+ GY   +   
Sbjct: 74  WRRCSCAPGYKLGDDLL 90

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* Length = 114

 Score = 60.1 bits (146), Expect = 3e-11
 Identities = 18/86 (20%), Positives = 27/86 (31%), Gaps = 7/86 (8%)

Query: 134 SCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRC----SVLGEPCYPGACGDG 189
                +    + C  +G C D      ++C C  G+ G  C    S L      G C   
Sbjct: 10  LVLPLEHPCASLCCGHGTCIDGIG--SFSCDCRSGWEGRFCQREVSFLNCSLDNGGCT-H 66

Query: 190 SCQDVDGAMKCLCPIGTAGKRCEQKI 215
            C +  G  +C C  G        + 
Sbjct: 67  YCLEEVGWRRCSCAPGYKLGDDLLQC 92

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* Length = 114

 Score = 47.8 bits (114), Expect = 6e-07
 Identities = 13/53 (24%), Positives = 17/53 (32%)

Query: 598 TGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDSYECLCSLGYAPPNCAKRVSI 650
               GD C           +C   G C     S+ C C  G+    C + VS 
Sbjct: 2   KHVDGDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSF 54

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* Length = 114

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 9/55 (16%), Positives = 13/55 (23%), Gaps = 4/55 (7%)

Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCK 625
           C+         C           CSC  GY       + +  +K   C       
Sbjct: 57  CSLDNGGCTHYCLEEVGW---RRCSCAPGYKLGDDLLQCHPAVK-FPCGRPWKRM 107

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* Length = 114

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 12/56 (21%), Positives = 16/56 (28%), Gaps = 6/56 (10%)

Query: 132 VDSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACG 187
           V   N C     +N      C +        C C PG+      +   P     CG
Sbjct: 52  VSFLN-CSL---DNGGCTHYCLEEVG--WRRCSCAPGYKLGDDLLQCHPAVKFPCG 101

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* Length = 114

 Score = 39.3 bits (92), Expect = 6e-04
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 168 GFSGDRCSV--LGEPCYPGACGDGSCQDVDGAMKCLCPIGTAGKRCEQKIKILQPAFKHG 225
              GD+C V  L  PC    CG G+C D  G+  C C  G  G+ C++++  L  +  +G
Sbjct: 3   HVDGDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNG 62

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} Length = 317

 Score = 67.8 bits (166), Expect = 3e-12
 Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 3/74 (4%)

Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDS 630
           C  +PC + G C  +     GY C+C  GY G +CE   N C           C    +S
Sbjct: 8   CISQPCLHNGSCQDSI---WGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQES 64

Query: 631 YECLCSLGYAPPNC 644
           Y C C+ GY     
Sbjct: 65  YTCSCAQGYRLGED 78

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} Length = 317

 Score = 59.0 bits (143), Expect = 2e-09
 Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 7/78 (8%)

Query: 138 CKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGS--CQDVD 195
           C S     C++NG CQD+    GYTC C PG+ G  C +    C+P         C    
Sbjct: 8   CISQP---CLHNGSCQDSIW--GYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQ 62

Query: 196 GAMKCLCPIGTAGKRCEQ 213
            +  C C  G       +
Sbjct: 63  ESYTCSCAQGYRLGEDHK 80

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} Length = 324

 Score = 66.0 bits (161), Expect = 1e-11
 Identities = 24/80 (30%), Positives = 30/80 (37%), Gaps = 14/80 (17%)

Query: 569 PVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTP 628
             C P+PC+N G C           C C  GY GD C K          C   G C    
Sbjct: 245 SKC-PQPCRNGGKCI------GKSKCKCSKGYQGDLCSKPVCEP----GCGAHGTCH--- 290

Query: 629 DSYECLCSLGYAPPNCAKRV 648
           +  +C C  G+   +C KR 
Sbjct: 291 EPNKCQCQEGWHGRHCNKRY 310

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} Length = 324

 Score = 64.1 bits (156), Expect = 4e-11
 Identities = 23/74 (31%), Positives = 28/74 (37%), Gaps = 13/74 (17%)

Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDS 630
             P  C+N G C           C C  G+ G HCEK          C NGG+C      
Sbjct: 150 ECPGGCRNGGFC------NERRICECPDGFHGPHCEKALCTP----RCMNGGLCV---TP 196

Query: 631 YECLCSLGYAPPNC 644
             C+C  G+   NC
Sbjct: 197 GFCICPPGFYGVNC 210

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} Length = 324

 Score = 63.3 bits (154), Expect = 8e-11
 Identities = 24/78 (30%), Positives = 30/78 (38%), Gaps = 13/78 (16%)

Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDS 630
                C N G C+          C C  G  G+ C  E + C     C+NGG C      
Sbjct: 214 NCSTTCFNGGTCFYP------GKCICPPGLEGEQC--EISKCP--QPCRNGGKCI---GK 260

Query: 631 YECLCSLGYAPPNCAKRV 648
            +C CS GY    C+K V
Sbjct: 261 SKCKCSKGYQGDLCSKPV 278

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} Length = 324

 Score = 62.6 bits (152), Expect = 1e-10
 Identities = 20/74 (27%), Positives = 26/74 (35%), Gaps = 13/74 (17%)

Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDS 630
                C N G+C           C C  G+ G +C+K N        C NGG C      
Sbjct: 182 LCTPRCMNGGLC------VTPGFCICPPGFYGVNCDKANCST----TCFNGGTCF---YP 228

Query: 631 YECLCSLGYAPPNC 644
            +C+C  G     C
Sbjct: 229 GKCICPPGLEGEQC 242

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} Length = 324

 Score = 61.4 bits (149), Expect = 3e-10
 Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 12/81 (14%)

Query: 135 CNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGSCQDV 194
           C   K      C N G C          C C  G+ GD CS     C PG    G+C + 
Sbjct: 242 CEISKCP--QPCRNGGKCIG-----KSKCKCSKGYQGDLCSK--PVCEPGCGAHGTCHEP 292

Query: 195 DGAMKCLCPIGTAGKRCEQKI 215
           +   KC C  G  G+ C ++ 
Sbjct: 293 N---KCQCQEGWHGRHCNKRY 310

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} Length = 324

 Score = 61.4 bits (149), Expect = 3e-10
 Identities = 22/81 (27%), Positives = 28/81 (34%), Gaps = 12/81 (14%)

Query: 133 DSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGSCQ 192
            +C   +      C N G C +        C CP GF G  C      C P     G C 
Sbjct: 144 KTCQQAECP--GGCRNGGFCNE-----RRICECPDGFHGPHCEK--ALCTPRCMNGGLCV 194

Query: 193 DVDGAMKCLCPIGTAGKRCEQ 213
                  C+CP G  G  C++
Sbjct: 195 TPG---FCICPPGFYGVNCDK 212

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} Length = 324

 Score = 60.3 bits (146), Expect = 7e-10
 Identities = 23/81 (28%), Positives = 29/81 (35%), Gaps = 12/81 (14%)

Query: 135 CNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGSCQDV 194
           C+    S    C N G C          CICPPG  G++C +    C       G C   
Sbjct: 210 CDKANCS--TTCFNGGTCFY-----PGKCICPPGLEGEQCEI--SKCPQPCRNGGKCIGK 260

Query: 195 DGAMKCLCPIGTAGKRCEQKI 215
               KC C  G  G  C + +
Sbjct: 261 S---KCKCSKGYQGDLCSKPV 278

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} Length = 324

 Score = 54.1 bits (130), Expect = 8e-08
 Identities = 13/79 (16%), Positives = 24/79 (30%), Gaps = 10/79 (12%)

Query: 566 ESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCK 625
                       +  +    ++       +         C++    C  G  C+NGG C 
Sbjct: 110 LGKQDGVAAFEVDVIVM---NSEGNTILKTPQNAIFFKTCQQ--AECPGG--CRNGGFCN 162

Query: 626 VTPDSYECLCSLGYAPPNC 644
              +   C C  G+  P+C
Sbjct: 163 ---ERRICECPDGFHGPHC 178

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} Length = 324

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 13/82 (15%), Positives = 17/82 (20%), Gaps = 13/82 (15%)

Query: 134 SCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGSCQD 193
                         + G                       C      C  G    G C +
Sbjct: 114 DGVAAFEVDVIVMNSEGNT--------ILKTPQNAIFFKTCQQ--AECPGGCRNGGFCNE 163

Query: 194 VDGAMKCLCPIGTAGKRCEQKI 215
                 C CP G  G  CE+ +
Sbjct: 164 RR---ICECPDGFHGPHCEKAL 182

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} Length = 324

 Score = 50.6 bits (121), Expect = 9e-07
 Identities = 16/56 (28%), Positives = 20/56 (35%), Gaps = 7/56 (12%)

Query: 567 SSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGG 622
           S PVC P  C  +G C           C C  G+ G HC K     + G    +  
Sbjct: 275 SKPVCEP-GCGAHGTC------HEPNKCQCQEGWHGRHCNKRYEASLIGTKHHHHH 323

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} Length = 324

 Score = 48.3 bits (115), Expect = 5e-06
 Identities = 10/44 (22%), Positives = 14/44 (31%), Gaps = 5/44 (11%)

Query: 143 HNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGAC 186
              C  +G C +        C C  G+ G  C+   E    G  
Sbjct: 280 EPGCGAHGTCHE-----PNKCQCQEGWHGRHCNKRYEASLIGTK 318

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B* Length = 423

 Score = 64.0 bits (155), Expect = 8e-11
 Identities = 18/86 (20%), Positives = 27/86 (31%), Gaps = 8/86 (9%)

Query: 561 DCSDLESSPVCA-PKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCK 619
            C      P C     C N  +C           C C  G+ G  CE+E    M   +  
Sbjct: 279 ACHPGFYGPDCKLRCSCNNGEMCDRF------QGCLCSPGWQGLQCEREGIPRMTPKIVD 332

Query: 620 NGGMCKVTPDSYECLC-SLGYAPPNC 644
                +V    +  +C + G+  P  
Sbjct: 333 LPDHIEVNSGKFNPICKASGWPLPTN 358

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B* Length = 423

 Score = 63.6 bits (154), Expect = 1e-10
 Identities = 23/91 (25%), Positives = 31/91 (34%), Gaps = 17/91 (18%)

Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKE----------NNMCMKGDVCKN 620
                C N G+C+          C C  G+ G  CEK              C   + CK+
Sbjct: 200 HLCTACMNNGVCHEDT-----GECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKS 254

Query: 621 GGMCKVTPDSYECLCSLGYAPPNCAKRVSIG 651
              C   PD Y C C+ G+    C +    G
Sbjct: 255 YVFC--LPDPYGCSCATGWKGLQCNEACHPG 283

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B* Length = 423

 Score = 62.0 bits (150), Expect = 3e-10
 Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 6/84 (7%)

Query: 132 VDSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGSC 191
           +       +  ++     G    +A        C     G  C+ L   C       G C
Sbjct: 156 LPHAQPQDAGVYSARYIGGNLFTSAFTRLIVRRCEAQKWGPECNHLCTACMNN----GVC 211

Query: 192 QDVDGAMKCLCPIGTAGKRCEQKI 215
            +  G  +C+CP G  G+ CE+  
Sbjct: 212 HEDTG--ECICPPGFMGRTCEKAC 233

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B* Length = 423

 Score = 60.5 bits (146), Expect = 1e-09
 Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 9/91 (9%)

Query: 134 SCNTCKSSKH--NNCINNGLCQDAAT--RIGYTCICPPGFSGDRCSVLGEPCYPGACGDG 189
           +C      +     C     C+         Y C C  G+ G +C+    P + G     
Sbjct: 232 ACELHTFGRTCKERCSGQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGFYGPDCKL 291

Query: 190 SCQDVDGAM-----KCLCPIGTAGKRCEQKI 215
            C   +G M      CLC  G  G +CE++ 
Sbjct: 292 RCSCNNGEMCDRFQGCLCSPGWQGLQCEREG 322

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B* Length = 423

 Score = 59.7 bits (144), Expect = 2e-09
 Identities = 22/84 (26%), Positives = 27/84 (32%), Gaps = 18/84 (21%)

Query: 144 NNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGAC------------GDGSC 191
             C+NNG+C +        CICPPGF G  C    E    G                  C
Sbjct: 203 TACMNNGVCHE----DTGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVFC 258

Query: 192 QDVDGAMKCLCPIGTAGKRCEQKI 215
                   C C  G  G +C +  
Sbjct: 259 LPDPY--GCSCATGWKGLQCNEAC 280

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B* Length = 423

 Score = 59.7 bits (144), Expect = 2e-09
 Identities = 24/84 (28%), Positives = 31/84 (36%), Gaps = 14/84 (16%)

Query: 567 SSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGD------VCKN 620
                  + C++Y  C P       Y CSC TG+ G  C +  +    G        C N
Sbjct: 243 KERCSGQEGCKSYVFCLPDP-----YGCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNN 297

Query: 621 GGMCKVTPDSYECLCSLGYAPPNC 644
           G MC        CLCS G+    C
Sbjct: 298 GEMCD---RFQGCLCSPGWQGLQC 318

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B* Length = 423

 Score = 51.2 bits (122), Expect = 8e-07
 Identities = 16/86 (18%), Positives = 25/86 (29%), Gaps = 12/86 (13%)

Query: 135 CNTCKS----SKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLG-EPCYPGAC-GD 188
           C+            +C N  +C          C+C PG+ G +C   G     P      
Sbjct: 280 CHPGFYGPDCKLRCSCNNGEMCDR-----FQGCLCSPGWQGLQCEREGIPRMTPKIVDLP 334

Query: 189 GSCQDVDGAMKCLCPI-GTAGKRCEQ 213
              +   G    +C   G      E+
Sbjct: 335 DHIEVNSGKFNPICKASGWPLPTNEE 360

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B* Length = 423

 Score = 48.5 bits (115), Expect = 6e-06
 Identities = 16/92 (17%), Positives = 26/92 (28%), Gaps = 9/92 (9%)

Query: 561 DCSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKN 620
                +             G  + +  +       C     G  C      C     C N
Sbjct: 155 HLPHAQPQDAGVYSARYIGGNLFTSAFTRL-IVRRCEAQKWGPECNHL---C---TACMN 207

Query: 621 GGMCKVTPDSYECLCSLGYAPPNCAKRVSIGS 652
            G+C    D+ EC+C  G+    C K   + +
Sbjct: 208 NGVC--HEDTGECICPPGFMGRTCEKACELHT 237

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 56.4 bits (136), Expect = 4e-10
 Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 5/97 (5%)

Query: 288 TPLYSNDAPAF---NPVSTKEAPYGSKITLTCNNDLEAPV-EYTWSKRSNGHVLPFGAFS 343
            PL +   P         ++    G+ +T  C    ++P     W+ R +   LP  A  
Sbjct: 1   APLAAPSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWT-RLHNGKLPSRAMD 59

Query: 344 RENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLV 380
               LT++ ++ SDAG YVC  SN     +  + L V
Sbjct: 60  FNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 45.2 bits (107), Expect = 4e-06
 Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 9/59 (15%)

Query: 4  IKWSRADG--LPLQRYAEGNVLRITNARLQDSGKYKCE---IQGHDSFRGSDYVKLNVE 57
          + W+R     LP +      +L I N +  D+G Y C    +   D         L+V+
Sbjct: 43 LVWTRLHNGKLPSRAMDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGT----ATLHVQ 97

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* Length = 687

 Score = 58.2 bits (140), Expect = 9e-09
 Identities = 15/79 (18%), Positives = 19/79 (24%), Gaps = 12/79 (15%)

Query: 566 ESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCK 625
           +  P C P PC  Y  C                G  G +C          +    G  CK
Sbjct: 591 QECPGC-PSPCGKYISC--------AECLKFEKGPFGKNCSAACPGLQLSNNPVKGRTCK 641

Query: 626 VTPDSYECLCSLGYAPPNC 644
                    C + Y     
Sbjct: 642 ER---DSEGCWVAYTLEQQ 657

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* Length = 687

 Score = 57.0 bits (137), Expect = 2e-08
 Identities = 18/82 (21%), Positives = 24/82 (29%), Gaps = 14/82 (17%)

Query: 134 SCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGD-GSCQ 192
           +   C + +   C   G C+         C C  G+    C     P  P  CG   SC 
Sbjct: 556 TTEGCLNPRRVECSGRGRCRC------NVCECHSGYQLPLCQEC--PGCPSPCGKYISCA 607

Query: 193 DVDGAMKCLCPIGTAGKRCEQK 214
           +           G  GK C   
Sbjct: 608 EC-----LKFEKGPFGKNCSAA 624

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* Length = 687

 Score = 52.8 bits (126), Expect = 3e-07
 Identities = 12/89 (13%), Positives = 22/89 (24%), Gaps = 19/89 (21%)

Query: 133 DSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGD---- 188
             C  C     + C     C               G  G  CS     C      +    
Sbjct: 588 PLCQECPGC-PSPCGKYISC-------AECLKFEKGPFGKNCS---AACPGLQLSNNPVK 636

Query: 189 -GSCQDVDGAMKCLCPIGTAGKRCEQKIK 216
             +C++ D      C +    ++ +   +
Sbjct: 637 GRTCKERDS---EGCWVAYTLEQQDGMDR 662

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* Length = 687

 Score = 50.9 bits (121), Expect = 2e-06
 Identities = 17/75 (22%), Positives = 22/75 (29%), Gaps = 13/75 (17%)

Query: 574 KPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENN----MCMKGDVCKNGGMCKVTPD 629
           + C   G             C C  G+ G  C+ E      +  +   C   G C     
Sbjct: 525 QVCGGPGRGLCFC-----GKCRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRC----R 575

Query: 630 SYECLCSLGYAPPNC 644
              C C  GY  P C
Sbjct: 576 CNVCECHSGYQLPLC 590

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* Length = 687

 Score = 49.7 bits (118), Expect = 3e-06
 Identities = 19/97 (19%), Positives = 25/97 (25%), Gaps = 13/97 (13%)

Query: 134 SCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGSCQD 193
           +C    + +       GLC          C C PGF G  C                C  
Sbjct: 518 NCE-RYNGQVCGGPGRGLCFC------GKCRCHPGFEGSACQCERTTEGCLNPRRVECSG 570

Query: 194 ----VDGAMKCLCPIGTAGKRCEQKIKILQPAFKHGS 226
                     C C  G     C++      P  K+ S
Sbjct: 571 RGRCRCN--VCECHSGYQLPLCQECPGCPSPCGKYIS 605

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* Length = 687

 Score = 45.9 bits (108), Expect = 5e-05
 Identities = 18/87 (20%), Positives = 23/87 (26%), Gaps = 18/87 (20%)

Query: 561 DCSDLESSPVCA---PKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDV 617
            C    ++  C       C   G C       R   C C +GY    C+ E   C     
Sbjct: 550 ACQCERTTEGCLNPRRVECSGRGRC-------RCNVCECHSGYQLPLCQ-ECPGC--PSP 599

Query: 618 CKNGGMCKVTPDSYECLCSLGYAPPNC 644
           C     C     +       G    NC
Sbjct: 600 CGKYISC-----AECLKFEKGPFGKNC 621

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* Length = 687

 Score = 45.5 bits (107), Expect = 8e-05
 Identities = 16/95 (16%), Positives = 29/95 (30%), Gaps = 12/95 (12%)

Query: 128 ERVGVDSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACG 187
           + V V     C+    +   +  LC          C C  G+ G  C    +        
Sbjct: 413 DIVTVQVLPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQEL- 471

Query: 188 DGSCQDVDGAM-----------KCLCPIGTAGKRC 211
           +GSC+  + ++           +CLC       + 
Sbjct: 472 EGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKL 506

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* Length = 687

 Score = 42.8 bits (100), Expect = 5e-04
 Identities = 15/76 (19%), Positives = 20/76 (26%), Gaps = 5/76 (6%)

Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMC--MKGDVCKNGGMCKVTP 628
                C   G C          +        G +CE +   C    G VC   G      
Sbjct: 479 NNSIICSGLGDCV-CGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRG--LC 535

Query: 629 DSYECLCSLGYAPPNC 644
              +C C  G+    C
Sbjct: 536 FCGKCRCHPGFEGSAC 551

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 57.0 bits (137), Expect = 1e-08
 Identities = 13/112 (11%), Positives = 34/112 (30%), Gaps = 7/112 (6%)

Query: 285 GSATPLYSNDAPAFNPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSR 344
                L    +      +  E    + ITL    D    +   W        L       
Sbjct: 39  DLGCALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVF--KHSSLNCQPHFD 96

Query: 345 EN-----TLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
                  ++ + ++  + AG Y+  + ++     I   + + +++    ++P
Sbjct: 97  LQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRP 148

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 48.5 bits (115), Expect = 6e-06
 Identities = 12/112 (10%), Positives = 29/112 (25%), Gaps = 8/112 (7%)

Query: 285 GSATPLYSNDAPAFNPVSTK---EAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGA 341
             +  +   +    N  ++    E     +   +        +  TW+   +    P   
Sbjct: 314 SQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTF--SRKSFPCEQ 371

Query: 342 FSREN--TLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
              +N  +++         G Y+    N D        L +    P    + 
Sbjct: 372 KGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRK-PQVLAEA 422

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 47.4 bits (112), Expect = 2e-05
 Identities = 13/92 (14%), Positives = 23/92 (25%), Gaps = 16/92 (17%)

Query: 290 LYSNDAPAFNPVSTKEAPYGSKITLTCN-NDLEAPVEYTWSKRSNGHVLPFGAFSREN-- 346
           +  N  P    +       G  + + C    +      TW        L  G +   +  
Sbjct: 224 IDLNQTPQT-TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWEL--ENKALEEGNYFEMSTY 280

Query: 347 ----------TLTLQEIKNSDAGMYVCKVSNK 368
                        +  +  +D G Y C  S  
Sbjct: 281 STNRTMIRILFAFVSSVARNDTGYYTCSSSKH 312

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 52.0 bits (125), Expect = 1e-08
 Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 5/86 (5%)

Query: 302 STKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMY 361
           ++++   GS + L C         Y W K  N   L       +    +  +     G Y
Sbjct: 11  TSQKLMPGSTLVLQCVAVGSPIPHYQWFK--NELPLTH---ETKKLYMVPYVDLEHQGTY 65

Query: 362 VCKVSNKDMTVEIPSILLVTDSVPLF 387
            C V N   + +   + ++ D +   
Sbjct: 66  WCHVYNDRDSQDSKKVEIIIDELNNL 91

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 10/57 (17%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 3  YIKWSRADGLPLQRYAEGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNVERM 59
          + +W + + LPL       +  +    L+  G Y C +      + S  V++ ++ +
Sbjct: 34 HYQWFK-NELPLTH-ETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDEL 88

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A Length = 91

 Score = 51.3 bits (123), Expect = 2e-08
 Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 6/47 (12%)

Query: 128 ERVGVDSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRC 174
             V V SC          C N G CQ A     + C CP GF+G  C
Sbjct: 44  HSVPVKSC------SEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSC 84

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A Length = 91

 Score = 50.6 bits (121), Expect = 4e-08
 Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 1/36 (2%)

Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCE 606
           C+   C N G C         + C C  G++G  CE
Sbjct: 51  CSEPRCFNGGTCQQ-ALYFSDFVCQCPEGFAGKSCE 85

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A Length = 91

 Score = 49.8 bits (119), Expect = 6e-08
 Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 4/55 (7%)

Query: 161 YTCICPPGFSGDRCSVLGEPCYPGACG-DGSCQDV--DGAMKCLCPIGTAGKRCE 212
             C C  G +    SV  + C    C   G+CQ         C CP G AGK CE
Sbjct: 32  EYCWCNSGRAQ-CHSVPVKSCSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCE 85

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A Length = 91

 Score = 49.4 bits (118), Expect = 1e-07
 Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 4/63 (6%)

Query: 584 PTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCK--VTPDSYECLCSLGYAP 641
           P   S R   C C +G +  H       C +   C NGG C+  +    + C C  G+A 
Sbjct: 24  PVLRSNRVEYCWCNSGRAQCHSV-PVKSCSEPR-CFNGGTCQQALYFSDFVCQCPEGFAG 81

Query: 642 PNC 644
            +C
Sbjct: 82  KSC 84

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 54.4 bits (131), Expect = 2e-08
 Identities = 23/134 (17%), Positives = 44/134 (32%), Gaps = 20/134 (14%)

Query: 295 APAFNPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSR--------EN 346
           AP            G+++ +TC          +W +  +G +LP   +S          +
Sbjct: 19  APKLQGPVAVYTWEGNQVNITCEVFAYPSATISWFR--DGQLLPSSNYSNIKIYNTPSAS 76

Query: 347 TLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKPLSYLALPTLTDAHLH 406
            L +     +D G Y C   N+     +  IL+  D  P       S   +   +     
Sbjct: 77  YLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQAD-TP----SSPSIDQVEPYSS---- 127

Query: 407 FSIELSFKPTDYNG 420
            + ++ F   +  G
Sbjct: 128 -TAQVQFDEPEATG 140

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 56.9 bits (137), Expect = 2e-08
 Identities = 22/99 (22%), Positives = 35/99 (35%), Gaps = 8/99 (8%)

Query: 302 STKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMY 361
            T+   +G     TC          +W K  +G  +       E+ L ++ +K  D GMY
Sbjct: 351 PTQTVDFGRPAVFTCQYTGNPIKTVSWMK--DGKAIG----HSESVLRIESVKKEDKGMY 404

Query: 362 VCKVSNKDMTVEIPSILLVTDSV--PLFTQKPLSYLALP 398
            C V N   + E  + L +      P+  Q        P
Sbjct: 405 QCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEP 443

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 54.6 bits (131), Expect = 1e-07
 Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 7/98 (7%)

Query: 300 PVSTKEAPYGSKITLTCNNDLEAPVEYTWSK------RSNGHVLPFGAFSRENTLTLQEI 353
               K     S + L C         + W K      R    VL         TL +++ 
Sbjct: 254 KFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDA 313

Query: 354 KNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
              D+G Y+C V+N      + ++L VT +       P
Sbjct: 314 VVEDSGKYLCVVNNSVGGESVETVLTVT-APLSAKIDP 350

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 52.6 bits (126), Expect = 4e-07
 Identities = 20/117 (17%), Positives = 34/117 (29%), Gaps = 6/117 (5%)

Query: 294 DAPAFNPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGA---FSRENTLTL 350
             P    +  K    G  + +TC           W +  +   LP           TL +
Sbjct: 526 GLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWER--DNRALPINRKQKVFPNGTLII 583

Query: 351 QEI-KNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKPLSYLALPTLTDAHLH 406
           + + +NSD   Y C   N++      S+ +    +P                   LH
Sbjct: 584 ENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLH 640

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 48.8 bits (116), Expect = 8e-06
 Identities = 22/107 (20%), Positives = 41/107 (38%), Gaps = 9/107 (8%)

Query: 293 NDAPAFNPVSTKE--APYGSKITLTCN-NDLEAPVEYTWSK-----RSNGHVLPFGAFSR 344
              P   P + +E  A  G  +TL C+    + P+   W+        +  +       R
Sbjct: 616 MVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRR 675

Query: 345 ENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
            + LT++ ++ S AG + C   N     +  + L V    P +  +P
Sbjct: 676 GSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVP-PRWILEP 721

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 48.4 bits (115), Expect = 8e-06
 Identities = 16/118 (13%), Positives = 33/118 (27%), Gaps = 13/118 (11%)

Query: 286 SATPLYSNDAPAF--NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFS 343
           +  P      P F   P +  +    +   + C        E  W + S+G  +      
Sbjct: 29  ANPPDADQKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIR-SDGTAVGDVPGL 87

Query: 344 R----ENTLTLQEIKNSD------AGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
           R    +  L     +  D      A +Y C   N+  ++    + +       +    
Sbjct: 88  RQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADV 145

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 45.3 bits (107), Expect = 8e-05
 Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 7/83 (8%)

Query: 305 EAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSR-------ENTLTLQEIKNSD 357
               GS   + C  D     + TW K        +    +       E TL +  I+ ++
Sbjct: 725 AFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTN 784

Query: 358 AGMYVCKVSNKDMTVEIPSILLV 380
            G Y+C+  N   +     I++ 
Sbjct: 785 EGYYLCEAINGIGSGLSAVIMIS 807

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 43.0 bits (101), Expect = 5e-04
 Identities = 19/101 (18%), Positives = 31/101 (30%), Gaps = 14/101 (13%)

Query: 294 DAPAFNPV-STKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLP------FGAFSREN 346
           D P        +    G  + L C        E +W    +G  +        G +   N
Sbjct: 428 DPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWEL--DGKKIANNDRYQVGQYVTVN 485

Query: 347 -----TLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTD 382
                 L +  +  +D G+Y C   +K    E  + L V  
Sbjct: 486 GDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYG 526

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 55.2 bits (133), Expect = 3e-08
 Identities = 17/101 (16%), Positives = 29/101 (28%), Gaps = 4/101 (3%)

Query: 295 APAF-NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEI 353
           AP F     + E   G  + +TC           W +      L            L+  
Sbjct: 205 APRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQ--GAEDLTPEDDMPVGRNVLELT 262

Query: 354 KNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKPLSY 394
              D+  Y C   +    +E  + + V   +P    K   +
Sbjct: 263 DVKDSANYTCVAMSSLGVIEAVAQITVKS-LPKAGTKHHHH 302

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 23/126 (18%), Positives = 40/126 (31%), Gaps = 20/126 (15%)

Query: 287 ATPLYSNDAPAF-NPVSTKEAPYGSKITLTCNNDLEA---PV-EYTWSKRSNGHVLPFGA 341
                 +  P        K        T+ C     A   P  E TW K  +   +   A
Sbjct: 100 REDQLPSGFPNIDMGPQLKVVERTRTATMLC----AASGNPDPEITWFK--DFLPVDPSA 153

Query: 342 FSR------ENTLTLQEIKNSDAGMYVCKVSNK---DMTVEIPSILLVTDSVPLFTQKPL 392
            +          L ++  + +D G Y C  +N      +      + V +  P F+  P+
Sbjct: 154 SNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPM 213

Query: 393 SYLALP 398
           S+  +P
Sbjct: 214 SHEIMP 219

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 56.1 bits (135), Expect = 4e-08
 Identities = 22/98 (22%), Positives = 41/98 (41%), Gaps = 8/98 (8%)

Query: 290 LYSNDAPAFNPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLT 349
           LY  D P  +P  T     G  ++L+C+     P +Y+W    +G++           L 
Sbjct: 378 LYGPDDPTISPSYT-YYRPGVNLSLSCHAASNPPAQYSWLI--DGNIQQHT-----QELF 429

Query: 350 LQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLF 387
           +  I   ++G+Y C+ +N        ++  +T S  L 
Sbjct: 430 ISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELP 467

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 53.0 bits (127), Expect = 3e-07
 Identities = 23/109 (21%), Positives = 36/109 (33%), Gaps = 8/109 (7%)

Query: 288 TPLYSNDAPAFNPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGA----FS 343
           T       P     ++        + LTC  +++    Y W    N   LP        +
Sbjct: 283 TVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQ-NTTYLWWV--NNQSLPVSPRLQLSN 339

Query: 344 RENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVP-LFTQKP 391
              TLTL  +  +D G Y C + N+        ++L     P   T  P
Sbjct: 340 DNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISP 388

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 52.3 bits (125), Expect = 5e-07
 Identities = 22/101 (21%), Positives = 34/101 (33%), Gaps = 8/101 (7%)

Query: 296 PAFNPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSR----ENTLTLQ 351
           P+ +  ++K       +  TC  +      Y W    N   LP     +      TLTL 
Sbjct: 113 PSISSNNSKPVEDKDAVAFTCEPE-TQDATYLWWV--NNQSLPVSPRLQLSNGNRTLTLF 169

Query: 352 EIKNSDAGMYVCKVSNKDMTVEIPSILL-VTDSVPLFTQKP 391
            +  +D   Y C+  N        S++L V       T  P
Sbjct: 170 NVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISP 210

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 51.9 bits (124), Expect = 8e-07
 Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 7/82 (8%)

Query: 300 PVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAG 359
                    G+ + L+C++      +Y+W    NG             L + +I  ++ G
Sbjct: 565 SPPDSSYLSGANLNLSCHSASNPSPQYSWRI--NGIPQQHTQ-----VLFIAKITPNNNG 617

Query: 360 MYVCKVSNKDMTVEIPSILLVT 381
            Y C VSN         +  +T
Sbjct: 618 TYACFVSNLATGRNNSIVKSIT 639

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 51.1 bits (122), Expect = 1e-06
 Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 8/98 (8%)

Query: 288 TPLYSNDAPAFNPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENT 347
             LY  DAP  +P        G  + L+C+     P +Y+W    NG             
Sbjct: 198 NVLYGPDAPTISP-LNTSYRSGENLNLSCHAASNPPAQYSWFV--NGTFQQST-----QE 249

Query: 348 LTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVP 385
           L +  I  +++G Y C+  N D  +   ++  +T    
Sbjct: 250 LFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAE 287

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 49.2 bits (117), Expect = 4e-06
 Identities = 24/97 (24%), Positives = 32/97 (32%), Gaps = 8/97 (8%)

Query: 300 PVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFG---AFSREN-TLTLQEIKN 355
             ++K       +  TC  +      Y W    NG  LP       S  N TLTL  +  
Sbjct: 473 SNNSKPVEDKDAVAFTCEPE-AQNTTYLWWV--NGQSLPVSPRLQLSNGNRTLTLFNVTR 529

Query: 356 SDAGMYVCKVSNKDMTVEIPSILL-VTDSVPLFTQKP 391
           +DA  YVC + N         + L V          P
Sbjct: 530 NDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISP 566

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 45.3 bits (107), Expect = 8e-05
 Identities = 22/115 (19%), Positives = 37/115 (32%), Gaps = 24/115 (20%)

Query: 300 PVSTKEAPYGSKITLTCNNDLEAPVEYTWSK--------------RSNGHVLPFGAFSR- 344
           P +  E   G ++ L  +N  +    Y+W K                     P  A+S  
Sbjct: 8   PFNVAE---GKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGR 64

Query: 345 -----ENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSI-LLVTDSVPLFTQKPLS 393
                  +L +Q I  +D G Y   V   D+  E  +    V   +P  +    +
Sbjct: 65  EIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNN 119

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 55.9 bits (134), Expect = 4e-08
 Identities = 18/113 (15%), Positives = 34/113 (30%), Gaps = 8/113 (7%)

Query: 285 GSATPLYSNDAPAFNP-VSTKEAPYGSKITLTCNNDLEAPVEYTWSKR-----SNGHVLP 338
               P  S D P  +           + + +TC    +  +++ W            V  
Sbjct: 21  SVGLPSVSLDLPRLSIQKDILTIKANTTLQITC--RGQRDLDWLWPNNQSGSEQRVEVTE 78

Query: 339 FGAFSRENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
                   TLT+ ++  +D G Y C     D+   I   +    S  + +   
Sbjct: 79  CSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSD 131

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 55.5 bits (133), Expect = 6e-08
 Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 4/96 (4%)

Query: 300 PVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSREN-TLTLQEIKNSDA 358
             S  EA  G ++ +        P E  W K  NG  L      +    LT+ E+   D 
Sbjct: 336 MESLVEATVGERVRIPAKYLGYPPPEIKWYK--NGIPLESNHTIKAGHVLTIMEVSERDT 393

Query: 359 GMYVCKVSNKDMTVEIPSILLVTDSV-PLFTQKPLS 393
           G Y   ++N     +   ++ +   V P   +K L 
Sbjct: 394 GNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLI 429

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 54.8 bits (131), Expect = 1e-07
 Identities = 12/103 (11%), Positives = 30/103 (29%), Gaps = 3/103 (2%)

Query: 288 TPLYSNDAPAFNPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGA---FSR 344
              +       + V          + + C   +        ++      +P G    +  
Sbjct: 122 RSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDS 181

Query: 345 ENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLF 387
           +   T+     S AGM  C+    D + +    ++V     ++
Sbjct: 182 KKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIY 224

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 50.5 bits (120), Expect = 2e-06
 Identities = 25/135 (18%), Positives = 44/135 (32%), Gaps = 19/135 (14%)

Query: 298 FNPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSREN----------- 346
            +P    E   G K+ L C    E  V   ++                +           
Sbjct: 228 LSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKK 287

Query: 347 ---TLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKPLSYLALPTLTDA 403
              TLT+  +  SD G+Y C  S+  MT +  + + V +  P           + +L +A
Sbjct: 288 FLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEK-PFVAFGS----GMESLVEA 342

Query: 404 HLHFSIELSFKPTDY 418
            +   + +  K   Y
Sbjct: 343 TVGERVRIPAKYLGY 357

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 47.1 bits (111), Expect = 2e-05
 Identities = 16/107 (14%), Positives = 35/107 (32%), Gaps = 8/107 (7%)

Query: 290 LYSNDAPAF-NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAF----SR 344
           +    AP     +  +    G  I ++C      P +  W K  +   L   +       
Sbjct: 661 VLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFK--DNETLVEDSGIVLKDG 718

Query: 345 ENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
              LT++ ++  D G+Y C+  +     ++     + +     T   
Sbjct: 719 NRNLTIRRVRKEDEGLYTCQACSVLGCAKV-EAFFIIEGAQEKTNLE 764

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 45.9 bits (108), Expect = 5e-05
 Identities = 16/129 (12%), Positives = 29/129 (22%), Gaps = 27/129 (20%)

Query: 290 LYSNDAPAFNPVSTKEAPYGSKITLTCNNDLEAPVEYTWSK------------------- 330
            +    P        +      ++L C  D       TW K                   
Sbjct: 545 FHVTRGPEITLQPDMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCK 604

Query: 331 -----RSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSV- 384
                      +   + +    + L+     D G YVC   ++        +  +T    
Sbjct: 605 NLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLER 664

Query: 385 --PLFTQKP 391
             P  T   
Sbjct: 665 VAPTITGNL 673

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 55.6 bits (134), Expect = 5e-08
 Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 10/100 (10%)

Query: 300 PVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSREN------TLTLQEI 353
           P+   EA  G  ITL C  D    +   W K      L      +        +L + ++
Sbjct: 11  PLEHVEAAIGEPITLQCKVDGTPEIRIAWYK--EHTKLRSAPAYKMQFKNNVASLVINKV 68

Query: 354 KNSDAGMYVCKVSNKDMTVEIPSILLVTDSV--PLFTQKP 391
            +SD G Y CK  N    V   ++L++ +    P F +K 
Sbjct: 69  DHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKL 108

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 52.1 bits (125), Expect = 5e-07
 Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 11/105 (10%)

Query: 295 APAF--NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSR------EN 346
            P F      ++           C       ++  W K  +   +   +  R        
Sbjct: 290 PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYK--DETEIQESSKFRMSFVESVA 347

Query: 347 TLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
            L +  +   D+G Y C+  N   +    + L V    P+F +KP
Sbjct: 348 VLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK-EPPVFRKKP 391

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 50.6 bits (121), Expect = 2e-06
 Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 10/104 (9%)

Query: 295 APAFNPV-STKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFG------AFSRENT 347
            P F       E   G+ + L C      P + +W K  +   L  G      + +   +
Sbjct: 384 PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHK--DKRELRSGKKYKIMSENFLTS 441

Query: 348 LTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
           + +  + ++D G Y CK SN   +      + +    P F +K 
Sbjct: 442 IHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAP-PRFVKKL 484

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 49.0 bits (117), Expect = 5e-06
 Identities = 26/104 (25%), Positives = 41/104 (39%), Gaps = 10/104 (9%)

Query: 295 APAFN-PVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSR------ENT 347
            P F+    + +   G   T  C+    AP++ TW+K  +   +  G   +        T
Sbjct: 197 PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAK--DNREIRPGGNYKMTLVENTAT 254

Query: 348 LTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
           LT+ ++   DAG Y C  SN        + L V    P F +K 
Sbjct: 255 LTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ-EPPRFIKKL 297

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 48.3 bits (115), Expect = 8e-06
 Identities = 25/117 (21%), Positives = 42/117 (35%), Gaps = 11/117 (9%)

Query: 291 YSNDAPAF-NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSR----- 344
                P+F   +       G  +   C  +   P++ +W K  +G +L   A  +     
Sbjct: 97  ERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYK--DGELLKDDANLQTSFIH 154

Query: 345 -ENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTD--SVPLFTQKPLSYLALP 398
              TL + +   S  G Y C  SN   T    + L +++    P F  KP+S     
Sbjct: 155 NVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLAL 211

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 47.9 bits (114), Expect = 1e-05
 Identities = 15/84 (17%), Positives = 30/84 (35%), Gaps = 10/84 (11%)

Query: 293 NDAPAF-NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRE------ 345
              P F   +S      G ++ L    +   P+   W K  +   +   + +        
Sbjct: 475 KAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFK--DKGEIVRESDNIWISYSEN 532

Query: 346 -NTLTLQEIKNSDAGMYVCKVSNK 368
             TL     + ++AG Y C++ N+
Sbjct: 533 IATLQFSRAEPANAGKYTCQIKNE 556

>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A Length = 53

 Score = 49.0 bits (117), Expect = 6e-08
 Identities = 18/42 (42%), Positives = 23/42 (54%)

Query: 133 DSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRC 174
           +S   C SS    C+N G+C    +   YTC C  G+SGDRC
Sbjct: 1   NSYPGCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRC 42

>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A Length = 53

 Score = 41.7 bits (98), Expect = 2e-05
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 569 PVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCE 606
           P      C N G+C   ++ +  Y C+C+ GYSGD C+
Sbjct: 7   PSSYDGYCLNGGVCMHIESLDS-YTCNCVIGYSGDRCQ 43

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A Length = 39

 Score = 48.2 bits (116), Expect = 6e-08
 Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 3/36 (8%)

Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCE 606
           C   PC N G C   D     Y C C  G+ G +CE
Sbjct: 6   CESNPCLNGGSC--KD-DINSYECWCPFGFEGKNCE 38

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A Length = 39

 Score = 45.5 bits (109), Expect = 5e-07
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 5/39 (12%)

Query: 136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRC 174
           + C+S   N C+N G C+D      Y C CP GF G  C
Sbjct: 4   DQCES---NPCLNGGSCKDDIN--SYECWCPFGFEGKNC 37

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A Length = 39

 Score = 37.8 bits (89), Expect = 3e-04
 Identities = 14/27 (51%), Positives = 16/27 (59%)

Query: 618 CKNGGMCKVTPDSYECLCSLGYAPPNC 644
           C NGG CK   +SYEC C  G+   NC
Sbjct: 11  CLNGGSCKDDINSYECWCPFGFEGKNC 37

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 52.3 bits (125), Expect = 7e-08
 Identities = 20/73 (27%), Positives = 24/73 (32%), Gaps = 5/73 (6%)

Query: 297 AFNPVSTKEAPYGSKITLTC--NNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIK 354
           A   V T     GSKI LTC  N+       + W K   G VL   A         +   
Sbjct: 1   AAGTVFTTVEDLGSKILLTCSLNDSATEVTGHRWLK--GGVVLKEDALP-GQKTEFKVDS 57

Query: 355 NSDAGMYVCKVSN 367
           +   G Y C    
Sbjct: 58  DDQWGEYSCVFLP 70

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 41.9 bits (98), Expect = 3e-04
 Identities = 18/136 (13%), Positives = 39/136 (28%), Gaps = 20/136 (14%)

Query: 251 RDGIILYSGQSDDGLGDFISLAIREKHM-----EFRFDTGSATPLYSNDAPAFNPVSTKE 305
           + G++L          +F      +         F  +      +  +  P    V + E
Sbjct: 36  KGGVVLKEDALPGQKTEFKV--DSDDQWGEYSCVFLPEPMGTANIQLHGPPRVKAVKSSE 93

Query: 306 -APYGSKITLTCN-NDLEAPVEYTWSKRSNGHVLPFGAFS----------RENTLTLQEI 353
               G    L C    +    ++ W K ++         S            + L ++ +
Sbjct: 94  HINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENL 153

Query: 354 K-NSDAGMYVCKVSNK 368
              +D G Y C  ++ 
Sbjct: 154 NMEADPGQYRCNGTSS 169

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 53.7 bits (129), Expect = 8e-08
 Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 10/99 (10%)

Query: 302 STKEAPYGSKITLTC--NNDLEAPVEYTWSKRSNGHVLP-------FGAFSRENTLTLQE 352
           S  E   G      C    D +   + +W   +   + P              +TLT+  
Sbjct: 10  SQGEISVGESKFFLCQVAGDAKDK-DISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYN 68

Query: 353 IKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
               DAG+Y C V+ +D T    ++ +      +F   P
Sbjct: 69  ANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAP 107

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 46.0 bits (109), Expect = 3e-05
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 10/63 (15%)

Query: 4  IKWSRADGLPL----QRYA------EGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVK 53
          I W   +G  L    QR +      + + L I NA + D+G YKC +   D  +    V 
Sbjct: 35 ISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVN 94

Query: 54 LNV 56
          + +
Sbjct: 95 VKI 97

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 19/104 (18%), Positives = 32/104 (30%), Gaps = 9/104 (8%)

Query: 295 APAFNPVST-KEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSR-----ENTL 348
              F    T +E   G    + C+     P    W     G  +      R      N L
Sbjct: 100 KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKH--KGRDVILKKDVRFIVLSNNYL 157

Query: 349 TLQEIKNSDAGMYVCKVSNK-DMTVEIPSILLVTDSVPLFTQKP 391
            ++ IK +D G Y C+        +    I ++ +  P    + 
Sbjct: 158 QIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQ 201

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 52.1 bits (125), Expect = 9e-08
 Identities = 18/98 (18%), Positives = 31/98 (31%), Gaps = 8/98 (8%)

Query: 302 STKEAPYGSKITLTCN-NDLEAPVEYTWSKR-------SNGHVLPFGAFSRENTLTLQEI 353
           S  E   G      C         + +W          +   +         +TLT+   
Sbjct: 10  SQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNA 69

Query: 354 KNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
              DAG+Y C V+ +D T    ++ +      +F   P
Sbjct: 70  NIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAP 107

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 46.4 bits (110), Expect = 7e-06
 Identities = 17/79 (21%), Positives = 26/79 (32%), Gaps = 8/79 (10%)

Query: 295 APAF-NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSR-----ENTL 348
              F N  + +E   G    + C+     P    W     G  +      R      N L
Sbjct: 100 KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKH--KGRDVILKKDVRFIVLSNNYL 157

Query: 349 TLQEIKNSDAGMYVCKVSN 367
            ++ IK +D G Y C+   
Sbjct: 158 QIRGIKKTDEGTYRCEGRI 176

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 40.6 bits (95), Expect = 7e-04
 Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 10/63 (15%)

Query: 4  IKWSRADGLPL----------QRYAEGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVK 53
          I W   +G  L              + + L I NA + D+G YKC +   D  +    V 
Sbjct: 35 ISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVN 94

Query: 54 LNV 56
          + +
Sbjct: 95 VKI 97

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 53.2 bits (127), Expect = 1e-07
 Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 3/82 (3%)

Query: 300 PVSTKEAPYGSKITLTCNNDLE-APVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDA 358
                     ++ TLTC+      P  Y WS       LP  A ++   L ++ +     
Sbjct: 223 GYDNNWYLGQNEATLTCDARSNPEPTGYNWST--TMGPLPPFAVAQGAQLLIRPVDKPIN 280

Query: 359 GMYVCKVSNKDMTVEIPSILLV 380
              +C V+N     +    + V
Sbjct: 281 TTLICNVTNALGARQAELTVQV 302

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 51.8 bits (124), Expect = 1e-07
 Identities = 23/116 (19%), Positives = 39/116 (33%), Gaps = 21/116 (18%)

Query: 294 DAPAF--NPVSTKEAPYGSKITLTCNNDLEA-PVEYTWSKRSNGHVLPFGAFSREN---- 346
           +   F  NP        G   TL C   ++  P E  W +  +G +L     ++      
Sbjct: 1   EESPFVGNP-GNITGARGLTGTLRCQLQVQGEPPEVHWLR--DGQILELADSTQTQVPLG 57

Query: 347 -----------TLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
                       L +  ++ SD G Y C V     T       +  + +P F ++P
Sbjct: 58  EDEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEP 113

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 13/80 (16%), Positives = 24/80 (30%), Gaps = 13/80 (16%)

Query: 295 APAF-NPVSTKEAPYGSKITLTCNNDLEA-----PVEYTWSKRSNGHVLPFGAFSRENTL 348
            P F      +     +   L+C    +A     PV+  W +  +   L   A       
Sbjct: 106 LPYFLEEPEDRTVAANTPFNLSC----QAQGPPEPVDLLWLQ--DAVPLA-TAPGHGPQR 158

Query: 349 TLQEIKNSDAGMYVCKVSNK 368
           +L     +    + C+  N 
Sbjct: 159 SLHVPGLNKTSSFSCEAHNA 178

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 53.7 bits (129), Expect = 1e-07
 Identities = 28/137 (20%), Positives = 50/137 (36%), Gaps = 20/137 (14%)

Query: 293 NDAPAF-NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSR------- 344
             AP F +  +   +  G+ I ++C+     P    W +  +  VLP    +        
Sbjct: 98  EYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRR--DKLVLPAKNTTNLKTYSTG 155

Query: 345 -ENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKPLSYLALPTLTDA 403
            +  L +    ++D G Y C  +N   T     IL + D VP     P        + + 
Sbjct: 156 RKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALAD-VP---SSPYG----VKIIEL 207

Query: 404 HLHFSIELSFKPTDYNG 420
               + ++SF   D +G
Sbjct: 208 SQT-TAKVSFNKPDSHG 223

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 49.8 bits (119), Expect = 2e-06
 Identities = 21/107 (19%), Positives = 43/107 (40%), Gaps = 12/107 (11%)

Query: 296 PAFNPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSREN--------- 346
           P    +  +      ++TL C+ + E   E TW +  +G     G  S +          
Sbjct: 2   PHIIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHG 61

Query: 347 --TLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
             +L ++++K SD+G Y C+ +++    +    L +  + P F    
Sbjct: 62  SSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYA-PKFISNQ 107

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 53.9 bits (129), Expect = 1e-07
 Identities = 12/110 (10%), Positives = 36/110 (32%), Gaps = 3/110 (2%)

Query: 285 GSATPLYSNDAPAFNPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSR 344
                L    +      +  E    + ITL    D    +   W  + +          +
Sbjct: 39  DLGCALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQ 98

Query: 345 EN---TLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
                ++ + ++  + AG Y+  + ++     I   + + +++    ++P
Sbjct: 99  NRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRP 148

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 47.4 bits (112), Expect = 1e-05
 Identities = 11/104 (10%), Positives = 25/104 (24%), Gaps = 7/104 (6%)

Query: 285 GSATPLYSNDAPAFNPV---STKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGA 341
             +  +   +    N        E     +   +        +  TW+   +    P   
Sbjct: 314 SQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTF--SRKSFPCEQ 371

Query: 342 FSREN--TLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDS 383
              +N  +++         G Y+    N D        L +   
Sbjct: 372 KGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSG 415

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 53.8 bits (129), Expect = 1e-07
 Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 5/77 (6%)

Query: 295 APAF--NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFS-RENTLTLQ 351
           AP +   P        G  +T+ C           WS   N   L  G  +  ++ L ++
Sbjct: 308 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSH--NAKPLSGGRATVTDSGLVIK 365

Query: 352 EIKNSDAGMYVCKVSNK 368
            +KN D G Y C+ +N+
Sbjct: 366 GVKNGDKGYYGCRATNE 382

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 53.0 bits (127), Expect = 2e-07
 Identities = 19/115 (16%), Positives = 33/115 (28%), Gaps = 14/115 (12%)

Query: 302 STKEAPYGSKITLTCNNDLEA----PVEYTWSK------RSNGHVLPFGAFSRENTLTLQ 351
               A  G    + C               + K       +    +     +    L  +
Sbjct: 220 KDMMAKAGDVTMIYC----MYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFK 275

Query: 352 EIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKPLSYLALPTLTDAHLH 406
                D G+Y C+V N     +  S+ L   S P + QKP   + +    D  + 
Sbjct: 276 TTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIP 330

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 51.8 bits (124), Expect = 6e-07
 Identities = 19/110 (17%), Positives = 30/110 (27%), Gaps = 11/110 (10%)

Query: 290 LYSNDAPAF--NPVSTKEAPYGSKITLTCN-NDLEAPVEYTWSKRSNGHVLPFGAFSR-- 344
           L  +  P     P         +   L C     +  V+Y+W K  +G    +   +   
Sbjct: 1   LPVDKYPVLKDQPAEV-LFRENNPTVLECIIEGNDQGVKYSWKK--DGKSYNWQEHNAAL 57

Query: 345 ---ENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
              E +L     + SD G Y C             I      +     K 
Sbjct: 58  RKDEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKT 107

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 8/109 (7%)

Query: 295 APAF-NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLP-----FGAFSRENTL 348
           AP    P+ T +A      T  C  +     E +W++  N  ++      +        L
Sbjct: 7   APVITTPLETVDALVEEVATFMCAVESYPQPEISWTR--NKILIKLFDTRYSIRENGQLL 64

Query: 349 TLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKPLSYLAL 397
           T+  +++SD G+Y C  +N           L     P  T+ P++   +
Sbjct: 65  TILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKII 113

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 16/78 (20%), Positives = 23/78 (29%), Gaps = 6/78 (7%)

Query: 295 APAF-NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGA---FSRENTLTL 350
            P    P    +   G K  L C          +W K      L   +        +L +
Sbjct: 100 KPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIK--GDSALRENSRIAVLESGSLRI 157

Query: 351 QEIKNSDAGMYVCKVSNK 368
             ++  DAG Y C   N 
Sbjct: 158 HNVQKEDAGQYRCVAKNS 175

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 40.5 bits (95), Expect = 9e-04
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 12/62 (19%)

Query: 4   IKWSRADGLPLQ---RYA--EGNVLRITNARLQDSGKYKCE---IQGHDSFRGSDYVKLN 55
           + W +     L+   R A  E   LRI N + +D+G+Y+C      G      S  VKL 
Sbjct: 132 VSWIK-GDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAY---SKLVKLE 187

Query: 56  VE 57
           VE
Sbjct: 188 VE 189

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A Length = 82

 Score = 48.3 bits (116), Expect = 2e-07
 Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 7/71 (9%)

Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGD--HCEKENNMCMKGDVCKNGGMCKVTP 628
           C       +G C  TD S   Y C C  GY      C  + + C  G+ C NG  CK   
Sbjct: 8   CKEPDVCKHGQCINTDGS---YRCECPFGYILAGNECV-DTDECSVGNPCGNG-TCKNVI 62

Query: 629 DSYECLCSLGY 639
             +EC C  G+
Sbjct: 63  GGFECTCEEGF 73

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A Length = 82

 Score = 44.1 bits (105), Expect = 7e-06
 Identities = 26/91 (28%), Positives = 33/91 (36%), Gaps = 23/91 (25%)

Query: 132 VDSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPC-------YPG 184
           +D C      KH  CIN        T   Y C CP G+        G  C          
Sbjct: 5   MDECKEPDVCKHGQCIN--------TDGSYRCECPFGYILA-----GNECVDTDECSVGN 51

Query: 185 ACGDGSCQDVDGAMKCLCPIG---TAGKRCE 212
            CG+G+C++V G  +C C  G        CE
Sbjct: 52  PCGNGTCKNVIGGFECTCEEGFEPGPMMTCE 82

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 426

 Score = 52.9 bits (126), Expect = 3e-07
 Identities = 19/81 (23%), Positives = 26/81 (32%), Gaps = 6/81 (7%)

Query: 133 DSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGSCQ 192
             C  CK +      + G         G    C P  S    +V          G G+C 
Sbjct: 324 PDCGKCKKNYQGRPWSPGSYLPIPK--GAANACIPSISSIGTNVCDNELLHCQNG-GTCH 380

Query: 193 DVDGAMKCLCPIGTAGKRCEQ 213
                ++CLCP    G  CE+
Sbjct: 381 ---NNVRCLCPAAYTGILCEK 398

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 426

 Score = 45.6 bits (107), Expect = 5e-05
 Identities = 13/76 (17%), Positives = 17/76 (22%), Gaps = 4/76 (5%)

Query: 569 PVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTP 628
            V     C  +      D S     C C    +G  C K      +G     G      P
Sbjct: 292 KVRGRCKCNLHATVCVYDNS--KLTCECEHNTTGPDCGKCKKNY-QGRPWSPGS-YLPIP 347

Query: 629 DSYECLCSLGYAPPNC 644
                 C    +    
Sbjct: 348 KGAANACIPSISSIGT 363

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 426

 Score = 45.6 bits (107), Expect = 5e-05
 Identities = 19/84 (22%), Positives = 24/84 (28%), Gaps = 16/84 (19%)

Query: 561 DCSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKN 620
             S   +        CQN G C           C C   Y+G  CEK          C+ 
Sbjct: 358 ISSIGTNVCDNELLHCQNGGTC------HNNVRCLCPAAYTGILCEK----LR----CEE 403

Query: 621 GGMCKVTPDSYECLCSLGYAPPNC 644
            G C    DS +     G    + 
Sbjct: 404 AGSC--GSDSGQGAPPHGTHHHHH 425

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 426

 Score = 44.4 bits (104), Expect = 1e-04
 Identities = 11/82 (13%), Positives = 17/82 (20%), Gaps = 7/82 (8%)

Query: 132 VDSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGSC 191
           +     CK      C  +            TC C    +G  C    +         GS 
Sbjct: 291 IKVRGRCK------CNLHATVCVY-DNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSY 343

Query: 192 QDVDGAMKCLCPIGTAGKRCEQ 213
             +       C    +      
Sbjct: 344 LPIPKGAANACIPSISSIGTNV 365

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 426

 Score = 44.4 bits (104), Expect = 1e-04
 Identities = 15/83 (18%), Positives = 22/83 (26%), Gaps = 15/83 (18%)

Query: 562 CSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNG 621
           C         +P                     +C+   S       +N       C+NG
Sbjct: 329 CKKNYQGRPWSPGSYLPIPKGAA---------NACIPSISSIGTNVCDNEL---LHCQNG 376

Query: 622 GMCKVTPDSYECLCSLGYAPPNC 644
           G C    ++  CLC   Y    C
Sbjct: 377 GTCH---NNVRCLCPAAYTGILC 396

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 52.4 bits (125), Expect = 3e-07
 Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 5/94 (5%)

Query: 300 PVSTKEAPYGSKITLTCNNDLE-APVEYTWSKRSNGHVLPFGAFSRENTLTLQE-IKNSD 357
                       + LTC  D      EY W+       LP G  ++  TL  +  I  S 
Sbjct: 238 GFDGNWYLQRMDVKLTCKADANPPATEYHWTT--LNGSLPKGVEAQNRTLFFKGPINYSL 295

Query: 358 AGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
           AG Y+C+ +N   T      + +T++        
Sbjct: 296 AGTYICEATNPIGTRSGQVEVNITEA-AALEHHH 328

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 42.8 bits (100), Expect = 3e-04
 Identities = 18/114 (15%), Positives = 30/114 (26%), Gaps = 8/114 (7%)

Query: 300 PVSTKEAPYGSKITLTCNNDLEAPV-EYTWSKRSNGHVL------PFGAFSRENTLTLQE 352
            +  K+      +  TC +    P    +W  R  G         P G  +  +   L  
Sbjct: 141 VLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVP 200

Query: 353 IKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKPLSYLALPTLTDAHLH 406
            + +      C V+      +    L V    P  T +           D  L 
Sbjct: 201 SREAHQQSLACIVNYHMDRFKESLTLNVQYE-PEVTIEGFDGNWYLQRMDVKLT 253

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 50.7 bits (121), Expect = 4e-07
 Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 5/90 (5%)

Query: 302 STKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMY 361
           ++++   GS + L C         Y W K  N   L       +    +  +     G Y
Sbjct: 126 TSQKLMPGSTLVLQCVAVGSPIPHYQWFK--NELPLTH---ETKKLYMVPYVDLEHQGTY 180

Query: 362 VCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
            C V N   + +   + ++ D +       
Sbjct: 181 WCHVYNDRDSQDSKKVEIIIDELNNLGHPD 210

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 49.1 bits (117), Expect = 1e-06
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 5/66 (7%)

Query: 302 STKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMY 361
            +K    G  + L C       V+Y W K      +P G     + L    +   DAG Y
Sbjct: 26  ESKAVLAGQFVKLCCRATGHPFVQYQWFK--MNKEIPNG---NTSELIFNAVHVKDAGFY 80

Query: 362 VCKVSN 367
           VC+V+N
Sbjct: 81  VCRVNN 86

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 44.5 bits (105), Expect = 4e-05
 Identities = 10/53 (18%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 4   IKWSRADGLPLQRYAEGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNV 56
            +W +     +      + L      ++D+G Y C +  + +F  S + +L+V
Sbjct: 50  YQWFK-MNKEIPN-GNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDV 100

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 8/38 (21%), Positives = 15/38 (39%), Gaps = 2/38 (5%)

Query: 4   IKWSRADGLPLQRYAEGNVLRITNARLQDSGKYKCEIQ 41
            +W + + LPL       +  +    L+  G Y C + 
Sbjct: 150 YQWFK-NELPLTH-ETKKLYMVPYVDLEHQGTYWCHVY 185

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 50.2 bits (120), Expect = 4e-07
 Identities = 16/102 (15%), Positives = 29/102 (28%), Gaps = 8/102 (7%)

Query: 294 DAPAFN-PVSTKEAPYGSKITLTC--NNDLEAPVEYTWSKRSNGHVLPFGAFSREN-TLT 349
           + P                +TL C   +     +   W+K  NG  L     +  N    
Sbjct: 2   NEPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTK--NGVELTATRKNASNMEYR 59

Query: 350 LQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
           + + +  D+G Y C            +  +   + P  T   
Sbjct: 60  INKPRAEDSGEYHCVYHFVSAPKA--NATIEVKAAPDITGHK 99

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 6/57 (10%)

Query: 4  IKWSRADGLPLQ---RYAEGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNVE 57
            W++ +G+ L    + A     RI   R +DSG+Y C      + + +    + V+
Sbjct: 37 SYWTK-NGVELTATRKNASNMEYRINKPRAEDSGEYHCVYHFVSAPKAN--ATIEVK 90

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 52.2 bits (125), Expect = 4e-07
 Identities = 20/94 (21%), Positives = 31/94 (32%), Gaps = 11/94 (11%)

Query: 302 STKEAPYGSKITLTCNNDLEA---PV-EYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSD 357
           +   A  G  +TL C     A   PV +  W K            S E  L +Q +   D
Sbjct: 215 ADTYALTGQMVTLEC----FAFGNPVPQIKWRK--LDGSQTSKWLSSEPLLHIQNVDFED 268

Query: 358 AGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
            G Y C+  N          +++  + P +    
Sbjct: 269 EGTYECEAENIKGRDTYQGRIIIH-AQPDWLDVI 301

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 47.5 bits (113), Expect = 1e-05
 Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 5/77 (6%)

Query: 295 APAF-NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSR--ENTLTLQ 351
            P + + ++  EA  GS +  +C    +      W +  +G  L            L   
Sbjct: 294 QPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLR--DGQPLASQNRIEVSGGELRFS 351

Query: 352 EIKNSDAGMYVCKVSNK 368
           ++   D+GMY C   NK
Sbjct: 352 KLVLEDSGMYQCVAENK 368

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 47.2 bits (112), Expect = 1e-05
 Identities = 29/108 (26%), Positives = 35/108 (32%), Gaps = 11/108 (10%)

Query: 295 APAF----NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSR----EN 346
            P F          E     K+TLTC      P  Y W    NG  L  G  SR      
Sbjct: 4   GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKM--NGTELKMGPDSRYRLVAG 61

Query: 347 TLT-LQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKPLS 393
            L     +K  DAG Y C  +N   TV      L    +  F+ +   
Sbjct: 62  DLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERD 109

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 44.5 bits (105), Expect = 1e-04
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 8/58 (13%)

Query: 4   IKWSRADG-LPLQRYAEGNVLRITNARLQDSGKYKCE---IQGHDSFRGSDYVKLNVE 57
           IKW + DG    +  +   +L I N   +D G Y+CE   I+G D+++     ++ + 
Sbjct: 239 IKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQ----GRIIIH 292

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 21/123 (17%), Positives = 33/123 (26%), Gaps = 13/123 (10%)

Query: 300 PVSTKEAPYGSKITLTCN-NDLEAPVEYTWSKRSNGHVLPFGAFSR------ENTLTLQE 352
                +   G  +  TC+       + Y W    N       A  R         L + +
Sbjct: 107 ERDPVKITEGWGVMFTCSPPPHYPALSYRWLL--NEFPNFIPADGRRFVSQTTGNLYIAK 164

Query: 353 IKNSDAGMYVCKVSNK----DMTVEIPSILLVTDSVPLFTQKPLSYLALPTLTDAHLHFS 408
            + SD G Y C  ++       +V      L   +       P      P  T A     
Sbjct: 165 TEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQM 224

Query: 409 IEL 411
           + L
Sbjct: 225 VTL 227

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 51.5 bits (123), Expect = 5e-07
 Identities = 14/93 (15%), Positives = 29/93 (31%), Gaps = 8/93 (8%)

Query: 309 GSKITLTCN-NDLEAPVEYTWSKRSNGHVLP------FGAFSRENTLTLQEIKNSDAGMY 361
           G    + C+ + ++   +      +    +P         + +  TL L ++    AG Y
Sbjct: 201 GEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNY 260

Query: 362 VCKVSNKDMTVEIPSILLVTDSVPLFTQKPLSY 394
            C  SN            V +S    +     +
Sbjct: 261 SCVASNVQGKHSTSMFFRVVES-AGNSHHHHHH 292

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 50.0 bits (119), Expect = 1e-06
 Identities = 16/97 (16%), Positives = 26/97 (26%), Gaps = 6/97 (6%)

Query: 296 PAFNP-VSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIK 354
           P   P V       G+ +TL C           W    + H   + +    + L+     
Sbjct: 5   PVIEPSVPELVVKPGATVTLRC----VGNGSVEWDGPPSPHWTLY-SDGSSSILSTNNAT 59

Query: 355 NSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
             + G Y C      +       L V D    +    
Sbjct: 60  FQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLA 96

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 48.8 bits (116), Expect = 4e-06
 Identities = 20/97 (20%), Positives = 26/97 (26%), Gaps = 9/97 (9%)

Query: 309 GSKITLTCN-NDLEAPVEYTWSKRSNGHVLPFGA---FSRENTLTLQEIKNSDAGMYVCK 364
                L C   D       +   R  G  L       FS  +  T+   K   +  Y C 
Sbjct: 104 DQDALLPCLLTDPVLEAGVSL-VRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCS 162

Query: 365 VSNKDMTVEIPSILL----VTDSVPLFTQKPLSYLAL 397
                  V   SI L    V    P  T  P   + +
Sbjct: 163 ALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRI 199

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 41.9 bits (98), Expect = 6e-04
 Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 5/59 (8%)

Query: 4   IKWSRADGLPL-----QRYAEGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNVE 57
           +   R  G PL       ++  +   I  A+   S  Y+C          S  ++L V+
Sbjct: 122 VSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQ 180

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 50.6 bits (120), Expect = 5e-07
 Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 14/101 (13%)

Query: 296 PAFNPVSTKEAPYGSKITLTCN--NDLEAPVEYTWS------------KRSNGHVLPFGA 341
              +P    E   G K+ L C    +L   +++ W              R          
Sbjct: 107 VVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEM 166

Query: 342 FSRENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTD 382
               +TLT+  +  SD G+Y C  S+  MT +  + + V +
Sbjct: 167 KKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE 207

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 51.7 bits (123), Expect = 5e-07
 Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 6/77 (7%)

Query: 309 GSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCKVSNK 368
           G  +TLT  +   +            ++          TL++ +++  D+G + C V   
Sbjct: 111 GQSLTLTLESPPGSSPSVQCRSPRGKNI------QGGKTLSVSQLELQDSGTWTCTVLQN 164

Query: 369 DMTVEIPSILLVTDSVP 385
              VE    ++V     
Sbjct: 165 QKKVEFKIDIVVLAFQK 181

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 42.9 bits (100), Expect = 3e-04
 Identities = 10/61 (16%), Positives = 18/61 (29%), Gaps = 5/61 (8%)

Query: 309 GSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCKVSNK 368
             +  LTC        +   S +                     + N +AGM+ C +S+ 
Sbjct: 296 QLQKNLTCEVWGPTSPKLMLSLKLENKEAKVS-----KREKAVWVLNPEAGMWQCLLSDS 350

Query: 369 D 369
            
Sbjct: 351 G 351

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 42.1 bits (98), Expect = 6e-04
 Identities = 13/87 (14%), Positives = 30/87 (34%), Gaps = 21/87 (24%)

Query: 309 GSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAF---------------------SRENT 347
           G  + LTC    +  +++ W   +   +L                               
Sbjct: 9   GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFP 68

Query: 348 LTLQEIKNSDAGMYVCKVSNKDMTVEI 374
           L ++ +K  D+  Y+C+V ++   V++
Sbjct: 69  LIIKNLKIEDSDTYICEVEDQKEEVQL 95

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 51.4 bits (123), Expect = 7e-07
 Identities = 22/112 (19%), Positives = 34/112 (30%), Gaps = 14/112 (12%)

Query: 288 TPLYSNDAPAF--NPVSTKEAPYGSKITLTCNNDLEA---PV-EYTWSKRSNGHVLPFGA 341
             +     P        T  A  G+ + L C     A   PV    W +  +G  +   A
Sbjct: 197 DGVMGEYEPKIEVQFPETVPAEKGTTVKLEC----FALGNPVPTILWRRA-DGKPIARKA 251

Query: 342 FSREN--TLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
              ++   L +   +  DAG Y C   N          L    + P + Q  
Sbjct: 252 RRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFY-AQPNWVQII 302

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 23/108 (21%), Positives = 34/108 (31%), Gaps = 11/108 (10%)

Query: 295 APAF----NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSR----EN 346
            P F    + V         K+ L+C           W    NG  +  G   R    + 
Sbjct: 5   GPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKL--NGTDVDIGMDFRYSVVDG 62

Query: 347 TLTLQEI-KNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKPLS 393
           +L +    K  DAG Y C  +N   T+      L    +  F  +  S
Sbjct: 63  SLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRS 110

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 45.6 bits (108), Expect = 4e-05
 Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 5/77 (6%)

Query: 295 APAF-NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSR--ENTLTLQ 351
            P +   ++         +   C  +      Y W K  NG  L      +  + TL + 
Sbjct: 295 QPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLK--NGDPLLTRDRIQIEQGTLNIT 352

Query: 352 EIKNSDAGMYVCKVSNK 368
            +  SDAGMY C   NK
Sbjct: 353 IVNLSDAGMYQCVAENK 369

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 45.2 bits (107), Expect = 6e-05
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 4/40 (10%)

Query: 4   IKWSRADGLPLQRYA----EGNVLRITNARLQDSGKYKCE 39
           I W RADG P+ R A       +L I N + +D+G Y+C 
Sbjct: 237 ILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECV 276

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 24/120 (20%), Positives = 44/120 (36%), Gaps = 10/120 (8%)

Query: 300 PVSTKEAPYGSKITLTCN-NDLEAPVEYTWSKRSNGHVLPFG---AFSREN-TLTLQEIK 354
             ST     G  + L C        + Y W    N +          S+E   L + +++
Sbjct: 108 TRSTVSVRRGQGMVLLCGPPPHSGELSYAWIF--NEYPSYQDNRRFVSQETGNLYIAKVE 165

Query: 355 NSDAGMYVCKVSN---KDMTVEIPSILLVTDSVPLFTQKPLSYLALPTLTDAHLHFSIEL 411
            SD G Y C V+N       +  P+ L++ +   +   +P   +  P    A    +++L
Sbjct: 166 KSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKL 225

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 47.0 bits (112), Expect = 8e-07
 Identities = 17/95 (17%), Positives = 37/95 (38%), Gaps = 6/95 (6%)

Query: 294 DAPAFNP-VSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSR--ENTLTL 350
            + +    V +     G  + L C    +      W +  +G  L     +R     + +
Sbjct: 2   SSGSSGVEVESFLVHPGDLLQLRCRLR-DDVQSINWLR--DGVQLAESNRTRITGEEVEV 58

Query: 351 QEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVP 385
           Q+   +D+G+Y C  S+   +      + V+D++P
Sbjct: 59  QDSVPADSGLYACVTSSPSGSDTTYFSVNVSDALP 93

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 8/57 (14%)

Query: 4  IKWSRADGLPLQ---RYA-EGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNV 56
          I W R DG+ L    R    G  + + ++   DSG Y C         GSD    +V
Sbjct: 34 INWLR-DGVQLAESNRTRITGEEVEVQDSVPADSGLYACVTSSP---SGSDTTYFSV 86

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 50.3 bits (120), Expect = 9e-07
 Identities = 18/89 (20%), Positives = 30/89 (33%), Gaps = 7/89 (7%)

Query: 302 STKEAPYGSKITLTCN-NDLEAPVEYTWSKRSNGHVLPFGAFSREN------TLTLQEIK 354
           S      G    + C+  + E        +      +P  +  ++N       L+L  + 
Sbjct: 194 SKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVD 253

Query: 355 NSDAGMYVCKVSNKDMTVEIPSILLVTDS 383
             DAG+Y C  SN   T        V +S
Sbjct: 254 FQDAGIYSCVASNDVGTRTATMNFQVVES 282

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 45.7 bits (108), Expect = 3e-05
 Identities = 19/97 (19%), Positives = 30/97 (30%), Gaps = 9/97 (9%)

Query: 309 GSKITLTCN-NDLEAPVEYTWSKRSNGHVLPFGA---FSRENTLTLQEIKNSDAGMYVCK 364
           G +  L C   D       +   R  G  +       FS      +++ K  D+  YVCK
Sbjct: 104 GQEAVLPCLITDPALKDSVSL-MREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCK 162

Query: 365 VSNKDMTVEIPSILLVTDSV----PLFTQKPLSYLAL 397
                       I L  + V    P    +P   + +
Sbjct: 163 TMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRI 199

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 45.3 bits (107), Expect = 4e-05
 Identities = 19/98 (19%), Positives = 25/98 (25%), Gaps = 6/98 (6%)

Query: 295 APAFNPV-STKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEI 353
           AP   P         G  +TL C     +     W              S  +TLT +  
Sbjct: 4   APVIEPSGPELVVEPGETVTLRC----VSNGSVEWDGP-ISPYWTLDPESPGSTLTTRNA 58

Query: 354 KNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
              + G Y C      M       L V D    +    
Sbjct: 59  TFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLA 96

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 41.9 bits (98), Expect = 5e-04
 Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 5/61 (8%)

Query: 4   IKWSRADGLPL-----QRYAEGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNVER 58
           +   R  G  +       ++      I  A++ DS  Y C+   +     S  + L V R
Sbjct: 122 VSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNR 181

Query: 59  M 59
           +
Sbjct: 182 V 182

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 50.1 bits (119), Expect = 1e-06
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 12/86 (13%)

Query: 309 GSKITLTCN-NDLEAPVEYTWSK-----------RSNGHVLPFGAFSRENTLTLQEIKNS 356
           G   T+ C   D+   V   W K           + N        + R+ TLT+   +  
Sbjct: 203 GDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVD 262

Query: 357 DAGMYVCKVSNKDMTVEIPSILLVTD 382
           D+G+++C  +N   +  + + L V +
Sbjct: 263 DSGVFMCYANNTFGSANVTTTLKVVE 288

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 43.6 bits (102), Expect = 1e-04
 Identities = 20/106 (18%), Positives = 42/106 (39%), Gaps = 14/106 (13%)

Query: 284 TGSATPLYSNDAPAFNPVSTK-EAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAF 342
             SA+P      P+ +P  ++     G  ++LTC      P    W+ ++  + +     
Sbjct: 2   QPSASP-GEPSPPSIHPAQSELIVEAGDTLSLTC----IDPDFVRWTFKTYFNEMVE--- 53

Query: 343 SRENTLTLQEIKNSDAGMYVCKVSNK-----DMTVEIPSILLVTDS 383
           +++N    ++ + +  G Y C  SN       + V  P+ L +   
Sbjct: 54  NKKNEWIQEKAEATRTGTYTCSNSNGLTSSIYVFVRDPAKLFLVGL 99

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 41.6 bits (97), Expect = 6e-04
 Identities = 16/124 (12%), Positives = 36/124 (29%), Gaps = 10/124 (8%)

Query: 283 DTGSATPLYSNDAP-AFNPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGA 341
              S+  ++  D    F           S   + C        +Y+     +G  LP   
Sbjct: 79  GLTSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSL-IECDGKSLPTDL 137

Query: 342 ---FSRENTLTLQEIKNS-DAGMYVCKVSNKDMTVEIPSILL----VTDSVPLFTQKPLS 393
               + +  +T++ +K +       C        +      L       ++P+ +    S
Sbjct: 138 TFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETS 197

Query: 394 YLAL 397
           +L  
Sbjct: 198 HLLK 201

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 49.1 bits (117), Expect = 1e-06
 Identities = 24/100 (24%), Positives = 36/100 (36%), Gaps = 13/100 (13%)

Query: 300 PVSTKEAPYGSKITLTCN--NDLEAPVEYTWSKRSNGHVLPFGAFSR------ENTLTLQ 351
            V  KE   G  + L C+        + Y W    N   +      R         L + 
Sbjct: 17  EVRVKE---GKGMVLLCDPPYHFPDDLSYRWLL--NEFPVFITMDKRRFVSQTNGNLYIA 71

Query: 352 EIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
            ++ SD G Y C VS+  +T  + S  +    +P  T KP
Sbjct: 72  NVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKP 111

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 19/80 (23%), Positives = 27/80 (33%), Gaps = 13/80 (16%)

Query: 295 APAF-NPVSTKEAPYGSKITLTCNNDLEA---PV-EYTWSKRSNGHVLPFGAF--SRENT 347
                       A  G  +TL C     A   PV +  W K      +P  A   +    
Sbjct: 113 PADIVVQFKDVYALMGQNVTLEC----FALGNPVPDIRWRK--VLEPMPSTAEISTSGAV 166

Query: 348 LTLQEIKNSDAGMYVCKVSN 367
           L +  I+  D G+Y C+  N
Sbjct: 167 LKIFNIQLEDEGIYECEAEN 186

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 12/61 (19%)

Query: 4   IKWSRADGLPLQRYA----EGNVLRITNARLQDSGKYKCE---IQGHDSFRGSDYVKLNV 56
           I+W +    P+   A     G VL+I N +L+D G Y+CE   I+G D  +      + V
Sbjct: 145 IRWRK-VLEPMPSTAEISTSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQAR----IYV 199

Query: 57  E 57
           +
Sbjct: 200 Q 200

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 50.6 bits (121), Expect = 1e-06
 Identities = 26/116 (22%), Positives = 41/116 (35%), Gaps = 18/116 (15%)

Query: 287 ATPLYSNDAPAF----NPVSTKEAPYGSKITLTCNNDLEA----PVEYTWSKRSNGHVLP 338
            T   +   P+F       S++    G  + L C     A      +  W K   G  LP
Sbjct: 211 TTRGVAERTPSFMYPQGTASSQMVLRGMDLLLEC----IASGVPTPDIAWYK--KGGDLP 264

Query: 339 FGAFSREN---TLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
                 EN    L +  +   D+G Y C  SNK  ++     + V  + P +  +P
Sbjct: 265 SDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVK-AAPYWLDEP 319

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 47.2 bits (112), Expect = 1e-05
 Identities = 15/80 (18%), Positives = 26/80 (32%), Gaps = 8/80 (10%)

Query: 295 APAF-NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSR-----ENTL 348
           AP + +         G    L C  +        W    NG  L     +       +T+
Sbjct: 312 APYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMV--NGEPLQSAPPNPNREVAGDTI 369

Query: 349 TLQEIKNSDAGMYVCKVSNK 368
             ++ + S   +Y C  SN+
Sbjct: 370 IFRDTQISSRAVYQCNTSNE 389

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 19/111 (17%), Positives = 27/111 (24%), Gaps = 14/111 (12%)

Query: 295 APAF--NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSR------EN 346
            P                 I + C         + W++  N          R        
Sbjct: 16  PPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTR--NSRFFNIAKDPRVSMRRRSG 73

Query: 347 TLTLQEI----KNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKPLS 393
           TL +            G Y C   NK  T     I L     PL+ ++ L 
Sbjct: 74  TLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLD 124

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 20/93 (21%), Positives = 30/93 (32%), Gaps = 8/93 (8%)

Query: 295 APAF--NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQE 352
                  P        G  +TLTC    +   +  W K  +G  LP         L L E
Sbjct: 10  EVQLVVEPEGG-AVAPGGTVTLTCEVPAQPSPQIHWMK--DGVPLPL---PPSPVLILPE 63

Query: 353 IKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVP 385
           I   D G Y C  ++     +    + ++   P
Sbjct: 64  IGPQDQGTYSCVATHSSHGPQESRAVSISIIEP 96

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 38.5 bits (90), Expect = 7e-04
 Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 4  IKWSRADGLPLQRYAEGNVLRITNARLQDSGKYKCE 39
          I W + DG+PL       VL +     QD G Y C 
Sbjct: 42 IHWMK-DGVPLP-LPPSPVLILPEIGPQDQGTYSCV 75

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 50.8 bits (121), Expect = 1e-06
 Identities = 21/111 (18%), Positives = 45/111 (40%), Gaps = 12/111 (10%)

Query: 300 PVSTKEAPYGSKITLTCN-NDLEAPVEYTWSK---------RSNGHVLPFGAFSRENTLT 349
             ++     G + T+TC   D+ + V  TW +         + N        + R+ TLT
Sbjct: 217 SKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLT 276

Query: 350 LQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDS--VPLFTQKPLSYLALP 398
           +   + +D+G+++C  +N   +  + + L V D   + +F     +     
Sbjct: 277 ISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVND 327

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 47.7 bits (113), Expect = 1e-05
 Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 12/92 (13%)

Query: 281 RFDTGSATP---LYSNDAPAFNPV-STKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHV 336
           R  TGS+ P         P+ +P  S      G +I L C      P    W+       
Sbjct: 19  RVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLC----TDPGFVKWTFEIL--- 71

Query: 337 LPFGAFSRENTLTLQEIKNSDAGMYVCKVSNK 368
                 +++N    ++ + ++ G Y C   + 
Sbjct: 72  -DETNENKQNEWITEKAEATNTGKYTCTNKHG 102

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 43.9 bits (103), Expect = 2e-04
 Identities = 18/104 (17%), Positives = 30/104 (28%), Gaps = 19/104 (18%)

Query: 302 STKEAPYGSKITLTCNNDLEA---PVEYTWSKRSNGHVLPFGA-----------FSRENT 347
           +T     G  + L    + EA   P    W                            + 
Sbjct: 321 TTVFVNDGENVDLIV--EYEAFPKPEHQQWIY--MNRTFTDKWEDYPKSENESNIRYVSE 376

Query: 348 LTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
           L L  +K ++ G Y   VSN D+   I +  +  ++ P      
Sbjct: 377 LHLTRLKGTEGGTYTFLVSNSDVNAAI-AFNVYVNTKPEILTYD 419

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 43.5 bits (102), Expect = 3e-04
 Identities = 19/128 (14%), Positives = 39/128 (30%), Gaps = 12/128 (9%)

Query: 281 RFDTGSATPLYSNDAP-AFNPVSTKEAPYGSKITLTCN-NDLEAPVEYTWSKRSNGHVLP 338
           +    ++  ++  D    F    +      +   + C   D E        K   G  LP
Sbjct: 100 KHGLSNSIYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTN--YSLKGCQGKPLP 157

Query: 339 FGA---FSRENTLTLQEIKNS-DAGMYVCKVSNKDMTVEIPSILL----VTDSVPLFTQK 390
                    +  + ++ +K +       C V  +  +V     +L       +VP+ +  
Sbjct: 158 KDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVS 217

Query: 391 PLSYLALP 398
             SYL   
Sbjct: 218 KASYLLRE 225

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 19/106 (17%), Positives = 35/106 (33%), Gaps = 7/106 (6%)

Query: 283 DTGSATPLYSNDAPAFNPVSTKEAPY--GSKITLTCNNDLEAPV-EYTWSKRSNGHVLPF 339
            +G + P+       +  +      +  G  + L C+   +  V    + +  NG    F
Sbjct: 69  LSGRSDPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYR--NGKAFKF 126

Query: 340 GAFSRENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVP 385
             F   + LT+ +   S  G Y C    K         + V +  P
Sbjct: 127 --FHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFP 170

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 48.8 bits (116), Expect = 2e-06
 Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 5/88 (5%)

Query: 295 APAFNPVSTKEAPYGSKITLTCNNDLEAP---VEYTWSKRSNGHVLPFGAFSRENTLTLQ 351
           AP  N   T     G+ +TL+C   L      ++  +S       L     +  +   + 
Sbjct: 171 APVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRG--RNTSSEYQIL 228

Query: 352 EIKNSDAGMYVCKVSNKDMTVEIPSILL 379
             +  D+G+Y C+ + +D  V   S  L
Sbjct: 229 TARREDSGLYWCEAATEDGNVLKRSPEL 256

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 48.8 bits (116), Expect = 3e-06
 Identities = 15/84 (17%), Positives = 23/84 (27%), Gaps = 10/84 (11%)

Query: 309 GSKITLTCN-NDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCKVSN 367
              +TL C    L       W    NG        +   +  +     +D+G Y C+   
Sbjct: 16  EETVTLHCEVLHLPGSSSTQWFL--NGTATQ----TSTPSYRITSASVNDSGEYRCQRGL 69

Query: 368 KDMTVEIPSILLVTDSVPLFTQKP 391
              +     I L      L  Q  
Sbjct: 70  ---SGRSDPIQLEIHRGWLLLQVS 90

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 3   YIKWSRADGLPLQRYAEGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNVE 57
            + + R +G   + +   + L I    +  +G Y C   G   +  S  + + V+
Sbjct: 114 NVLYYR-NGKAFKFFHWNSNLTILKTNISHNGTYHCSGMGKHRYT-SAGISVTVK 166

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 41.8 bits (98), Expect = 4e-04
 Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 4   IKWS-RADGLPLQRYAEGNVLRITNARLQDSGKYKCEIQG--HDSFRGSDYVKLNV 56
           + +S       L+     +  +I  AR +DSG Y CE      +  + S  ++L V
Sbjct: 205 LYFSFYMGSKTLRGRNTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQV 260

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 41.8 bits (98), Expect = 5e-04
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 6/58 (10%)

Query: 1  NAYIKWSRADGLPLQRYAEGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNVER 58
          ++  +W   +G   Q        RIT+A + DSG+Y+C+         SD ++L + R
Sbjct: 31 SSSTQWFL-NGTATQT--STPSYRITSASVNDSGEYRCQRGL---SGRSDPIQLEIHR 82

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 20/88 (22%), Positives = 30/88 (34%), Gaps = 6/88 (6%)

Query: 285 GSATPLYSNDAPAF-NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFS 343
           GS+       AP+F + +       G    L C+         TW    NG  + +   +
Sbjct: 1   GSSGSSGMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLL--NGQPIQYARST 58

Query: 344 REN---TLTLQEIKNSDAGMYVCKVSNK 368
            E     L +Q+    D G Y C   N 
Sbjct: 59  CEAGVAELHIQDALPEDHGTYTCLAENA 86

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 49.8 bits (118), Expect = 2e-06
 Identities = 27/124 (21%), Positives = 51/124 (41%), Gaps = 14/124 (11%)

Query: 309 GSKITLTC----NNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCK 364
           G   TLT     +  L + + YTW+K  +         +   TLT+ +  + +AG Y   
Sbjct: 17  GDGFTLTATVAGDEPLPSNLTYTWTK--DDQPHE----NNTATLTVADATSENAGSYKVT 70

Query: 365 VSNKDMTVEIPSILLVTD--SVPLFTQKPLSYLALPTLTDAHLHFSIELSF-KPTDYNGL 421
           V + D    + S + + +   + +   +P  +      TD  LH +++ S  K    N  
Sbjct: 71  VQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQ-TDVELHATVKFSGGKTPADNYE 129

Query: 422 IMYT 425
           + Y+
Sbjct: 130 LHYS 133

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 42.9 bits (100), Expect = 3e-04
 Identities = 14/105 (13%), Positives = 25/105 (23%), Gaps = 16/105 (15%)

Query: 295 APAFNPVSTKEAPYGSKITLTCNNDL--------EAPVEYTWSKRSNGHVLPFGAFSREN 346
                          + + L                 + Y+WSK     V+         
Sbjct: 93  IVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSK--GEDVI-----DTTQ 145

Query: 347 TLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
            +T+QE      G+Y  KV  +       S         +   + 
Sbjct: 146 DITIQEFTADKNGVYTVKVWGESEDSA-ASASTKIMLATMNVDQD 189

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 47.9 bits (114), Expect = 2e-06
 Identities = 11/75 (14%), Positives = 23/75 (30%), Gaps = 5/75 (6%)

Query: 295 APAFNPVSTKEAPYGSKITLTCNNDLEAPV-EYTWSKRSNGHVLPFGAFSRENTLTLQEI 353
                            I L C++     + + T+ +  NG    +  F   +   + + 
Sbjct: 89  GWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQ--NGKDRKY--FHHNSDFHIPKA 144

Query: 354 KNSDAGMYVCKVSNK 368
              D+G Y C+    
Sbjct: 145 TLKDSGSYFCRGLVG 159

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 46.8 bits (111), Expect = 5e-06
 Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 10/87 (11%)

Query: 309 GSKITLTCN-NDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCKVSN 367
              +TL C            W    N  ++     S+ ++  +     +D+G Y C+ + 
Sbjct: 22  KDSVTLKCQGAYSPEDNSTQWFH--NESLIS----SQASSYFIDAATVNDSGEYRCQTNL 75

Query: 368 KDMTVEIPSILLVTDSVPLFTQKPLSY 394
             ++     + L      L  Q P   
Sbjct: 76  STLS---DPVQLEVHIGWLLLQAPRWV 99

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 2   AYIKWSRADGLPLQRYAEGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNV 56
             + + + +G   + +   +   I  A L+DSG Y C          S+ V + +
Sbjct: 119 HKVTYLQ-NGKDRKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITI 172

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 40.6 bits (95), Expect = 5e-04
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 6/56 (10%)

Query: 1  NAYIKWSRADGLPLQRYAEGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNV 56
          +   +W   +   +    + +   I  A + DSG+Y+C+         SD V+L V
Sbjct: 37 DNSTQWFH-NESLISS--QASSYFIDAATVNDSGEYRCQTNLST---LSDPVQLEV 86

>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C* Length = 53

 Score = 44.4 bits (105), Expect = 2e-06
 Identities = 13/42 (30%), Positives = 21/42 (50%)

Query: 133 DSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRC 174
           +S + C  S    C+++G+C        Y C C  G+ G+RC
Sbjct: 1   NSDSECPLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERC 42

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 10/81 (12%)

Query: 562 CSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKE---NNMCMKGDVC 618
           CS  +        PC+       ++       C    G+  +         + C +    
Sbjct: 79  CSLGK----AWGTPCEMCPAVNTSEYK---ILCPGGEGFRPNPITVILEDIDECQELPGL 131

Query: 619 KNGGMCKVTPDSYECLCSLGY 639
             GG C  T  S++C C  GY
Sbjct: 132 CQGGKCINTFGSFQCRCPTGY 152

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162

 Score = 46.6 bits (111), Expect = 4e-06
 Identities = 11/72 (15%), Positives = 15/72 (20%), Gaps = 6/72 (8%)

Query: 575 PCQNYGICYPTDTSERGYNCSCLTGY--SGDHCEKENNMCMKGDVCKNGGMCKVTPDSYE 632
            C         +       CS   G   S   C         G  C+       +     
Sbjct: 48  NCYLDIRPRGDNGD---TACSNEIGVGVSKASCCCSLGKAW-GTPCEMCPAVNTSEYKIL 103

Query: 633 CLCSLGYAPPNC 644
           C    G+ P   
Sbjct: 104 CPGGEGFRPNPI 115

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162

 Score = 45.8 bits (109), Expect = 8e-06
 Identities = 11/72 (15%), Positives = 15/72 (20%), Gaps = 10/72 (13%)

Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKE---NNMCMKGDVCKNGGMCKVT 627
           C        G C  T  S   Y C C   +  +                 C      +  
Sbjct: 6   CLDPTTCISGNCVNTPGS---YICDCPPDFELNPTRVGCVDTRSG----NCYLDIRPRGD 58

Query: 628 PDSYECLCSLGY 639
                C   +G 
Sbjct: 59  NGDTACSNEIGV 70

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 15/82 (18%), Positives = 22/82 (26%), Gaps = 17/82 (20%)

Query: 143 HNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPC--------YPGACGDGSCQDV 194
              C          +     C    GF  +                  PG C  G C + 
Sbjct: 86  GTPCEMCPAVNT--SEYKILCPGGEGFRPNPI---TVILEDIDECQELPGLCQGGKCINT 140

Query: 195 DGAMKCLCPIG----TAGKRCE 212
            G+ +C CP G       + C+
Sbjct: 141 FGSFQCRCPTGYYLNEDTRVCD 162

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 8/85 (9%), Positives = 13/85 (15%), Gaps = 15/85 (17%)

Query: 135 CNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGD---RCSVLGEPCYPGACGDGSC 191
             +                         C    G        C  LG+          + 
Sbjct: 44  TRSGNCYLDIRPRG--------DNGDTACSNEIGVGVSKASCCCSLGKAWGTPCEMCPAV 95

Query: 192 QDVDGAMKCLCPIG----TAGKRCE 212
              +  + C    G          E
Sbjct: 96  NTSEYKILCPGGEGFRPNPITVILE 120

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 20/75 (26%), Positives = 26/75 (34%), Gaps = 9/75 (12%)

Query: 132 VDSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACG-DGS 190
           V+ C    +    NC+N        T   Y C CPP F  +   V       G C  D  
Sbjct: 3   VNECLDPTTCISGNCVN--------TPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIR 54

Query: 191 CQDVDGAMKCLCPIG 205
            +  +G   C   IG
Sbjct: 55  PRGDNGDTACSNEIG 69

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens} Length = 147

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 18/88 (20%), Positives = 29/88 (32%), Gaps = 16/88 (18%)

Query: 561 DCSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSG---------DHCEKENNM 611
            C    +      + C + G  + +  +    +  C  GYS          D CE    +
Sbjct: 57  RCEININGATLKSQCCSSLGAAWGSPCTLCQVDPICGKGYSRIKGTQCEDIDECEVFPGV 116

Query: 612 CMKGDVCKNGGMCKVTPDSYECLCSLGY 639
           C         G+C  T  S++C C  G 
Sbjct: 117 C-------KNGLCVNTRGSFKCQCPSGM 137

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens} Length = 147

 Score = 46.2 bits (110), Expect = 4e-06
 Identities = 16/74 (21%), Positives = 25/74 (33%), Gaps = 11/74 (14%)

Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDS 630
           C   PC N G+C  +  S   + C C +  + D  +         +  K  G C  T   
Sbjct: 7   CESSPCIN-GVCKNSPGS---FICECSSESTLDPTKTICI-----ETIK--GTCWQTVID 55

Query: 631 YECLCSLGYAPPNC 644
             C  ++  A    
Sbjct: 56  GRCEININGATLKS 69

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens} Length = 147

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 23/92 (25%), Positives = 34/92 (36%), Gaps = 18/92 (19%)

Query: 134 SCNT-CKSSKHNNCINNGLCQDAATRIG-YTCICPPGFSGDRCSVLGEPC--------YP 183
             N    + K   C + G    +   +     IC  G+S  +    G  C        +P
Sbjct: 59  EININGATLKSQCCSSLGAAWGSPCTLCQVDPICGKGYSRIK----GTQCEDIDECEVFP 114

Query: 184 GACGDGSCQDVDGAMKCLCPIG----TAGKRC 211
           G C +G C +  G+ KC CP G      G+ C
Sbjct: 115 GVCKNGLCVNTRGSFKCQCPSGMTLDATGRIC 146

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 45.6 bits (108), Expect = 2e-06
 Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 7/96 (7%)

Query: 290 LYSNDAPAFNPV--STKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSR--E 345
           L     P   PV   +     G  + L C    +      W +  +G  L     +R   
Sbjct: 3   LPEQAQPWGVPVEVESLLVHPGDLLQLRCRLR-DDVQSINWLR--DGVQLVESNRTRITG 59

Query: 346 NTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVT 381
             + +++   +D+G+Y C  S+   +      + V+
Sbjct: 60  EEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNVS 95

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 12/60 (20%)

Query: 4  IKWSRADGLPLQ---RYA-EGNVLRITNARLQDSGKYKCEIQ---GHDSFRGSDYVKLNV 56
          I W R DG+ L    R    G  + + ++   DSG Y C      G D+     Y  +NV
Sbjct: 40 INWLR-DGVQLVESNRTRITGEEVEVRDSIPADSGLYACVTSSPSGSDTT----YFSVNV 94

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* Length = 690

 Score = 50.1 bits (119), Expect = 2e-06
 Identities = 18/86 (20%), Positives = 27/86 (31%), Gaps = 15/86 (17%)

Query: 134 SCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGSCQD 193
              +C   K   C  +G C          C+C   ++G  C+          C   +   
Sbjct: 524 DDFSCVRYKGEMCSGHGQCSC------GDCLCDSDWTGYYCN---CTTRTDTCMSSNGLL 574

Query: 194 VDGAMKCLC------PIGTAGKRCEQ 213
             G  KC C        G+ G  CE+
Sbjct: 575 CSGRGKCECGSCVCIQPGSYGDTCEK 600

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* Length = 690

 Score = 47.8 bits (113), Expect = 1e-05
 Identities = 13/83 (15%), Positives = 24/83 (28%), Gaps = 2/83 (2%)

Query: 131 GVDSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGS 190
                N+ + +  N     G+C+     +G  C C              P          
Sbjct: 439 AQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQR 498

Query: 191 CQDVDGAMKCLCPIGTAGKRCEQ 213
            + + G  +C+C     GK   +
Sbjct: 499 GECLCG--QCVCHSSDFGKITGK 519

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* Length = 690

 Score = 47.0 bits (111), Expect = 3e-05
 Identities = 20/98 (20%), Positives = 28/98 (28%), Gaps = 18/98 (18%)

Query: 561 DCSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKE------NNMCMK 614
              D  S     P  C   G C        G  C C +   G    K       + +  K
Sbjct: 481 SQQDECSPREGQP-VCSQRGEC------LCG-QCVCHSSDFGKITGKYCECDDFSCVRYK 532

Query: 615 GDVCKNGGMCKVTPDSYECLCSLGYAPPNCAKRVSIGS 652
           G++C   G C       +CLC   +    C       +
Sbjct: 533 GEMCSGHGQC----SCGDCLCDSDWTGYYCNCTTRTDT 566

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* Length = 690

 Score = 46.2 bits (109), Expect = 4e-05
 Identities = 19/88 (21%), Positives = 29/88 (32%), Gaps = 16/88 (18%)

Query: 564 DLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENN----MCMKGDVCK 619
           D  S      + C  +G C          +C C + ++G +C         M   G +C 
Sbjct: 524 DDFSCVRYKGEMCSGHGQCSC-------GDCLCDSDWTGYYCNCTTRTDTCMSSNGLLCS 576

Query: 620 NGGMCKVTPDSYECLCS-LGYAPPNCAK 646
             G C    +   C+C   G     C K
Sbjct: 577 GRGKC----ECGSCVCIQPGSYGDTCEK 600

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* Length = 690

 Score = 46.2 bits (109), Expect = 4e-05
 Identities = 20/96 (20%), Positives = 24/96 (25%), Gaps = 23/96 (23%)

Query: 131 GVDSCNTCKSSKHNN-CINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDG 189
                + C   +    C   G C          C+C     G      G+ C    C D 
Sbjct: 479 RPSQQDECSPREGQPVCSQRGECLCG------QCVCHSSDFGKIT---GKYC---ECDDF 526

Query: 190 SCQDVDGAM----------KCLCPIGTAGKRCEQKI 215
           SC    G M           CLC     G  C    
Sbjct: 527 SCVRYKGEMCSGHGQCSCGDCLCDSDWTGYYCNCTT 562

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* Length = 690

 Score = 45.8 bits (108), Expect = 6e-05
 Identities = 18/83 (21%), Positives = 24/83 (28%), Gaps = 16/83 (19%)

Query: 133 DSCNTCKSSKHNNCINNGLCQDAATRIGYTCIC-PPGFSGDRCSVLGEPCYPGACGDGSC 191
              +TC SS    C   G C+        +C+C  PG  GD C      C         C
Sbjct: 562 TRTDTCMSSNGLLCSGRGKCEC------GSCVCIQPGSYGDTCEKC-PTCPDACTFKKEC 614

Query: 192 QDVDGAMKCLCPIGTAGKRCEQK 214
                     C     G   ++ 
Sbjct: 615 --------VECKKFDRGALHDEN 629

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* Length = 690

 Score = 42.4 bits (99), Expect = 6e-04
 Identities = 17/85 (20%), Positives = 21/85 (24%), Gaps = 12/85 (14%)

Query: 134 SCNTCKSSKH----NNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDG 189
            C +C   +     + C     C DA T       C     G       E      C D 
Sbjct: 582 ECGSCVCIQPGSYGDTCEKCPTCPDACTFKKECVECKKFDRGALHD---ENTCNRYCRDE 638

Query: 190 SCQDVDGAMKCLCPIGTAGKRCEQK 214
             + V      L   G     C  K
Sbjct: 639 -IESVK----ELKDTGKDAVNCTYK 658

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 48.3 bits (115), Expect = 2e-06
 Identities = 23/102 (22%), Positives = 30/102 (29%), Gaps = 7/102 (6%)

Query: 295 APAF-NPVSTKEAPYGSKITLTCNNDLEAPV-EYTWSKRSNGHVLPFGA---FSRENTLT 349
              F    S      G    + C      P    +W K  +G  L         R   L 
Sbjct: 111 RDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKK--DGSPLDDKDERITIRGGKLM 168

Query: 350 LQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
           +   + SDAG YVC  +N     E     L     P F +  
Sbjct: 169 ITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFVKAA 210

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 47.6 bits (113), Expect = 3e-06
 Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 10/84 (11%)

Query: 309 GSKITLTCN-NDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCKVSN 367
           G  +TLTCN N+        W    NG +         ++L +   K  D+G Y C+   
Sbjct: 19  GENVTLTCNGNNFFEVSSTKWFH--NGSLSE----ETNSSLNIVNAKFEDSGEYKCQHQQ 72

Query: 368 KDMTVEIPSILLVTDSVPLFTQKP 391
            + +     + L   S  L  Q  
Sbjct: 73  VNES---EPVYLEVFSDWLLLQAS 93

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 46.0 bits (109), Expect = 9e-06
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 4   IKWSRADGLPLQRYAEGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNV 56
           + + + DG  L+ + E + + ITNA ++DSG Y C  +       S+ + + V
Sbjct: 118 VIYYK-DGEALKYWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITV 169

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 44.1 bits (104), Expect = 3e-05
 Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 5/60 (8%)

Query: 309 GSKITLTCNNDLEAPV-EYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCKVSN 367
           G  + L C+      V +  + K  +G  L +  +   + +++      D+G Y C    
Sbjct: 100 GQPLFLRCHGWRNWDVYKVIYYK--DGEALKY--WYENHNISITNATVEDSGTYYCTGKV 155

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 47.5 bits (113), Expect = 3e-06
 Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 6/96 (6%)

Query: 302 STKEAPYGSKITLTCNNDLEAPVEYTWSK------RSNGHVLPFGAFSRENTLTLQEIKN 355
                  G  + L C+ +     +  W K        +   +P         L+L+ ++ 
Sbjct: 10  VKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVER 69

Query: 356 SDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
           SDAG Y C+V +   T     + L  + VP FT +P
Sbjct: 70  SDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEP 105

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 16/86 (18%), Positives = 25/86 (29%), Gaps = 17/86 (19%)

Query: 290 LYSNDAPAFN--PVSTKEAPYGSKITLTCNNDLEA-----PVEYTWSKRSNGHVLPFGAF 342
           L     P F   P      P  +   L+C    EA     PV   W +      +     
Sbjct: 93  LTVEGVPFFTVEPKDL-AVPPNAPFQLSC----EAVGPPEPVTIVWWR--GTTKIGG--- 142

Query: 343 SRENTLTLQEIKNSDAGMYVCKVSNK 368
              +   L     + + M+ C+  N 
Sbjct: 143 PAPSPSVLNVTGVTQSTMFSCEAHNL 168

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 48.0 bits (114), Expect = 3e-06
 Identities = 13/93 (13%), Positives = 30/93 (32%), Gaps = 6/93 (6%)

Query: 295 APAFNPVSTKEAPYGSKITLTCNNDLEAPV-EYTWSKRSNGHVLPFGAFSRENTLTLQEI 353
                            I L C++     + + T+ +  NG    +  F   +   + + 
Sbjct: 89  GWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQ--NGKGRKY--FHHNSDFYIPKA 144

Query: 354 KNSDAGMYVCKVSNKDMTVEIPSI-LLVTDSVP 385
              D+G Y C+       V   ++ + +T  + 
Sbjct: 145 TLKDSGSYFCRGLVGSKNVSSETVQITITQGLA 177

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 16/87 (18%), Positives = 27/87 (31%), Gaps = 10/87 (11%)

Query: 309 GSKITLTCNNDLE-APVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCKVSN 367
              +TL C            W    N  ++     S+ ++  +      D+G Y C+   
Sbjct: 22  KDSVTLKCQGAYSPEDQSTQWFH--NESLIS----SQASSYFIDAATVDDSGEYRCQTQL 75

Query: 368 KDMTVEIPSILLVTDSVPLFTQKPLSY 394
             ++   P  L V     L  Q P   
Sbjct: 76  STLS--DPVQLEVH-IGWLLLQAPRWV 99

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 2   AYIKWSRADGLPLQRYAEGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNV 56
             + + + +G   + +   +   I  A L+DSG Y C          S+ V++ +
Sbjct: 119 HKVTYLQ-NGKGRKYFHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITI 172

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 40.6 bits (95), Expect = 9e-04
 Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 6/56 (10%)

Query: 1  NAYIKWSRADGLPLQRYAEGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNV 56
          +   +W   +   +    + +   I  A + DSG+Y+C+ Q       SD V+L V
Sbjct: 37 DQSTQWFH-NESLISS--QASSYFIDAATVDDSGEYRCQTQLST---LSDPVQLEV 86

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 46.3 bits (109), Expect = 3e-06
 Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 14/98 (14%)

Query: 299 NPVSTKEAPYGSKITLTCN--NDLEAPVEYTWSKRSNGHVLP------------FGAFSR 344
           +P    E   G K+ L C    +L   +++ W   S+ H                     
Sbjct: 13  SPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKF 72

Query: 345 ENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTD 382
            +TLT+  +  SD G+Y C  S+  MT +  + + V +
Sbjct: 73  LSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE 110

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 48.5 bits (115), Expect = 4e-06
 Identities = 25/155 (16%), Positives = 42/155 (27%), Gaps = 17/155 (10%)

Query: 229 AYPTPKTMRKFKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKHMEFRFDTGSAT 288
           A+P    +    V  +      +  ++L +   D+G   F   A  E   +      +  
Sbjct: 122 AHPRA-KVTLNGVPAQPLGPRAQ--LLLKATPEDNG-RSFSCSATLEVAGQLIHKNQTRE 177

Query: 289 PLYSNDAPAFNPVSTKE---APYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRE 345
            L     P  +          P  S+ T  C        E    K      LP G     
Sbjct: 178 -LRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKD-GTFPLPIG----- 230

Query: 346 NTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLV 380
                  +     G Y+C+  +    V     + V
Sbjct: 231 ---ESVTVTRDLEGTYLCRARSTQGEVTREVTVNV 262

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 Length = 86

 Score = 44.6 bits (106), Expect = 4e-06
 Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 10/75 (13%)

Query: 571 CA--PKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKEN----NMCMKGDVCKNGGMC 624
           C   P  C   G C  T      + C C  GY       +N    + C +  +   GG+C
Sbjct: 6   CRISPDLCGR-GQCVNTPGD---FECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVC 61

Query: 625 KVTPDSYECLCSLGY 639
             T  SY C C  G+
Sbjct: 62  HNTEGSYRCECPPGH 76

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 Length = 86

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 18/71 (25%)

Query: 143 HNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPC--------YPGACGDGSCQDV 194
              C+N        T   + C C  G+      ++ + C         P  C  G C + 
Sbjct: 15  RGQCVN--------TPGDFECKCDEGYESG--FMMMKNCMDIDECQRDPLLCRGGVCHNT 64

Query: 195 DGAMKCLCPIG 205
           +G+ +C CP G
Sbjct: 65  EGSYRCECPPG 75

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 49.1 bits (117), Expect = 4e-06
 Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 7/94 (7%)

Query: 302 STKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGA----FSRENTLTLQEIKNSD 357
           S   A  G    L C      P  +TW +     V+   +        + L +  + + D
Sbjct: 229 SNVIAIEGKDAVLECCVSGYPPPSFTWLR--GEEVIQLRSKKYSLLGGSNLLISNVTDDD 286

Query: 358 AGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
           +G Y C V+ K+  +   + L V    P F   P
Sbjct: 287 SGTYTCVVTYKNENISASAELTVLVP-PWFLNHP 319

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 45.6 bits (108), Expect = 4e-05
 Identities = 15/68 (22%), Positives = 21/68 (30%), Gaps = 5/68 (7%)

Query: 304 KEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGA---FSRENTLTLQEIKNSDAGM 360
             A     I   C    +      W K  NG V+           + L +  +  SD G 
Sbjct: 322 LYAYESMDIEFECAVSGKPVPTVNWMK--NGDVVIPSDYFQIVGGSNLRILGVVKSDEGF 379

Query: 361 YVCKVSNK 368
           Y C   N+
Sbjct: 380 YQCVAENE 387

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 21/109 (19%), Positives = 36/109 (33%), Gaps = 14/109 (12%)

Query: 302 STKEAPYGSKITLTCNNDLEAPV-EYTWSKRSNGHVLPFGAFSRENTLT----------L 350
           S      G  + L C+ + +  V    W K  +G +L  G   R+  L            
Sbjct: 29  SDAVTMRGGNVLLNCSAESDRGVPVIKWKK--DGLILALGMDDRKQQLPNGSLLIQNILH 86

Query: 351 QEIKNSDAGMYVCKVSNKDM-TVEIPSILLVTDSVPLFTQKPLSYLALP 398
                 D G+Y C+ S  D  ++   +  ++      F  +  S  A  
Sbjct: 87  SRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFM 135

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 46.7 bits (111), Expect = 5e-06
 Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 5/74 (6%)

Query: 296 PAFNPVSTKEAPYGSKITLTCNNDLEAPV-EYTWSKRSNGHVLPFGAFSRENTLTLQEIK 354
                    E   G  I L C++  + P+ + T+ +  NG    F     + T ++ +  
Sbjct: 87  WLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQ--NGKSQKF--SHLDPTFSIPQAN 142

Query: 355 NSDAGMYVCKVSNK 368
           +S +G Y C  +  
Sbjct: 143 HSHSGDYHCTGNIG 156

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 1/53 (1%)

Query: 4   IKWSRADGLPLQRYAEGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNV 56
           + + + +G   +         I  A    SG Y C      +   S  V + V
Sbjct: 118 VTFFQ-NGKSQKFSHLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 10/84 (11%)

Query: 309 GSKITLTCNNDLEAPVE-YTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCKVSN 367
              +TLTC        +   W    NG+++P    +        +  N+D+G Y C+   
Sbjct: 19  EDSVTLTCQGARSPESDSIQWFH--NGNLIP----THTQPSYRFKANNNDSGEYTCQTGQ 72

Query: 368 KDMTVEIPSILLVTDSVPLFTQKP 391
              ++  P  L V     L  Q P
Sbjct: 73  --TSLSDPVHLTVL-FEWLVLQTP 93

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 15/62 (24%), Positives = 21/62 (33%), Gaps = 6/62 (9%)

Query: 1  NAYIKWSRADGLPLQRYAEGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNVERMM 60
          +  I+W   +G  +             A   DSG+Y C+         SD V L V    
Sbjct: 34 SDSIQWFH-NGNLIPT--HTQPSYRFKANNNDSGEYTCQTGQTS---LSDPVHLTVLFEW 87

Query: 61 FV 62
           V
Sbjct: 88 LV 89

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 47.4 bits (112), Expect = 5e-06
 Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 7/72 (9%)

Query: 300 PVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGA---FSREN-TLTLQEIKN 355
            V+         +TLTC ++ +      W    N   L        S+ N  L +  IK 
Sbjct: 116 QVTNTTVKELDSVTLTCLSN-DIGANIQWLF--NSQSLQLTERMTLSQNNSILRIDPIKR 172

Query: 356 SDAGMYVCKVSN 367
            DAG Y C++SN
Sbjct: 173 EDAGEYQCEISN 184

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 45.0 bits (106), Expect = 3e-05
 Identities = 15/105 (14%), Positives = 33/105 (31%), Gaps = 20/105 (19%)

Query: 309 GSKITLTCNNDLEAPVEYTWSK--------------RSNGHVLPFGAFS-REN-----TL 348
            + + L  +N   A   + W K               ++       A+S RE      +L
Sbjct: 14  DNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSL 73

Query: 349 TLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKPLS 393
             Q I   D G+Y   +++++      ++              ++
Sbjct: 74  LFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVT 118

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 42.7 bits (100), Expect = 2e-04
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 7/59 (11%)

Query: 4   IKWSRADGLPLQ---RY---AEGNVLRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNV 56
           I+W   +   LQ   R       ++LRI   + +D+G+Y+CEI    S R S+ +KL++
Sbjct: 141 IQWLF-NSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDI 198

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 46.9 bits (111), Expect = 5e-06
 Identities = 13/72 (18%), Positives = 27/72 (37%), Gaps = 6/72 (8%)

Query: 309 GSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCKVSNK 368
           G  +TLT  +   +            ++          TL++ +++  D+G + C V   
Sbjct: 112 GQSLTLTLESPPGSSPSVQCRSPRGKNI------QGGKTLSVSQLELQDSGTWTCTVLQN 165

Query: 369 DMTVEIPSILLV 380
              VE    ++V
Sbjct: 166 QKKVEFKIDIVV 177

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 43.8 bits (103), Expect = 5e-05
 Identities = 14/94 (14%), Positives = 31/94 (32%), Gaps = 21/94 (22%)

Query: 309 GSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAF---------------------SRENT 347
           G  + LTC    +  +++ W   +   +L                               
Sbjct: 10  GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFP 69

Query: 348 LTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVT 381
           L ++ +K  D+  Y+C+V ++   V++    L  
Sbjct: 70  LIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTA 103

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A Length = 107

 Score = 45.0 bits (107), Expect = 5e-06
 Identities = 13/63 (20%), Positives = 19/63 (30%), Gaps = 11/63 (17%)

Query: 580 GICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGG---MCKVTPDSYECLCS 636
              +   +    Y+               N  C+      NGG   +C      YECLC 
Sbjct: 4   HHHHHPMSD---YDIPTTENLYFQGAMGTNE-CLDN----NGGCSYVCNDLKIGYECLCP 55

Query: 637 LGY 639
            G+
Sbjct: 56  DGF 58

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A Length = 107

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 11/67 (16%)

Query: 576 CQNYGICYPTDTSERGYNCSCLTGY---SGDHCEKENNMCMKGDVCKNGGMCKVTPDSYE 632
           C    +C         Y C C  G+   +   CE + + C   D C    +C      Y+
Sbjct: 39  CS--YVCNDLKIG---YECLCPDGFQLVAQRRCE-DIDECQDPDTC--SQLCVNLEGGYK 90

Query: 633 CLCSLGY 639
           C C  G+
Sbjct: 91  CQCEEGF 97

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A Length = 107

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 18/76 (23%), Positives = 24/76 (31%), Gaps = 15/76 (19%)

Query: 142 KHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPC--YPGACGDGSCQDVDGAMK 199
           KH++  +            Y                 E C    G C    C D+    +
Sbjct: 2   KHHHHHH--------PMSDYDIPTTENLYFQGAMGTNE-CLDNNGGC-SYVCNDLKIGYE 51

Query: 200 CLCPIG---TAGKRCE 212
           CLCP G    A +RCE
Sbjct: 52  CLCPDGFQLVAQRRCE 67

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 45.1 bits (107), Expect = 5e-06
 Identities = 24/104 (23%), Positives = 36/104 (34%), Gaps = 15/104 (14%)

Query: 295 APAF-NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGA---FSREN---T 347
              F   + TKEA  G+  TL C  +L       W K      L  G      ++     
Sbjct: 8   PARFTQDLKTKEASEGATATLQC--ELSKVAPVEWKK--GPETLRDGGRYSLKQDGTRCE 63

Query: 348 LTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
           L + ++  +DAG Y C    +  +      L V      FT+  
Sbjct: 64  LQIHDLSVADAGEYSCMCGQERTSAT----LTVRALPARFTEGS 103

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 47.8 bits (114), Expect = 7e-06
 Identities = 22/132 (16%), Positives = 40/132 (30%), Gaps = 18/132 (13%)

Query: 296 PAFNPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSR----ENTLTLQ 351
                +    A  G  +++      +     TW K     ++      +     +  +L 
Sbjct: 106 KTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQK--GQDLIDNNGHYQVIVTRSFTSLV 163

Query: 352 EIKN---SDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKPLSYLALPTLTDAHLHFS 408
                   DAG YV    N+    +    L V D VP     P        ++D     S
Sbjct: 164 FPNGVERKDAGFYVVCAKNRFGIDQKTVELDVAD-VP---DPPRG----VKVSDVS-RDS 214

Query: 409 IELSFKPTDYNG 420
           + L++     +G
Sbjct: 215 VNLTWTEPASDG 226

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 18/108 (16%), Positives = 32/108 (29%), Gaps = 11/108 (10%)

Query: 295 APAF-NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSK------RSNGHVLPFGAFSRENT 347
           AP F   +      Y S  TL C           W +                     + 
Sbjct: 4   APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63

Query: 348 LTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTD----SVPLFTQKP 391
           L +  + + DA +Y  + +N+  +V   + L V       +P   +  
Sbjct: 64  LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGM 111

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 48.1 bits (114), Expect = 7e-06
 Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 7/79 (8%)

Query: 295 APAFNPVSTKEAPYGSKITLTCN-NDLEAPVEYTWSKRSNGHVLPFGA-FSREN---TLT 349
            P F    + E      + L C   +++      W K  +   +        ++   TL 
Sbjct: 222 GPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYK--DEREISVDEKHDFKDGICTLL 279

Query: 350 LQEIKNSDAGMYVCKVSNK 368
           + E    DAG+Y   + + 
Sbjct: 280 ITEFSKKDAGIYEVILKDD 298

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 41.5 bits (97), Expect = 8e-04
 Identities = 16/106 (15%), Positives = 33/106 (31%), Gaps = 9/106 (8%)

Query: 300 PVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFG------AFSRENTLTLQEI 353
            V   +      +   C+       E++WSK  +             +   +  +T +++
Sbjct: 9   VVVNVDDDGVISLNFECDKMTPKS-EFSWSK--DYVSTEDSPRLEVESKGNKTKMTFKDL 65

Query: 354 KNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKPLSYLALPT 399
              D G+Y C V++ D       I        L       +  +P 
Sbjct: 66  GMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPV 111

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 47.8 bits (114), Expect = 7e-06
 Identities = 18/111 (16%), Positives = 36/111 (32%), Gaps = 19/111 (17%)

Query: 293 NDAPAF--NPVSTKEAPYGSKITLTCNNDLEA----PVEYTWSKRSNGHVLPFGAFSR-- 344
            + P F      ++           C    +      ++  W K  +   +   +  R  
Sbjct: 96  QEPPRFIKKLEPSRIVKQDEHTRYEC----KIGGSPEIKVLWYK--DETEIQESSKFRMS 149

Query: 345 ----ENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
                  L +  +   D+G Y C+  N   +    + L V +  P+F +KP
Sbjct: 150 FVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEP-PVFRKKP 199

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 26/104 (25%), Positives = 40/104 (38%), Gaps = 10/104 (9%)

Query: 295 APAF-NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSR------ENT 347
            P F     + +   G   T  C+    AP++ TW+K  +   +  G   +        T
Sbjct: 5   PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAK--DNREIRPGGNYKMTLVENTAT 62

Query: 348 LTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
           LT+ ++   DAG Y C  SN        + L V    P F +K 
Sbjct: 63  LTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ-EPPRFIKKL 105

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 45.1 bits (107), Expect = 5e-05
 Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 9/83 (10%)

Query: 293 NDAPAF-NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGA---FSREN-- 346
            + P F       E   G+ + L C      P + +W K  +   L  G       EN  
Sbjct: 190 KEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHK--DKRELRSGKKYKIMSENFL 247

Query: 347 -TLTLQEIKNSDAGMYVCKVSNK 368
            ++ +  + ++D G Y CK SN 
Sbjct: 248 TSIHILNVDSADIGEYQCKASND 270

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 47.6 bits (113), Expect = 1e-05
 Identities = 27/116 (23%), Positives = 41/116 (35%), Gaps = 17/116 (14%)

Query: 288 TPLYSNDAPAFNPVSTK--EAPYGSKITLTCNNDLEA----PVEYTWSK------RSNGH 335
           T   S+ AP    +  K  E      I+L C     A       + W K      R    
Sbjct: 204 TEPISSSAPRTPALVQKPLELMVAHTISLLC----PAQGFPAPSFRWYKFIEGTTRKQAV 259

Query: 336 VLPFGAFSRENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
           VL         TL +++    D+G Y+C V+N      + ++L VT +       P
Sbjct: 260 VLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVT-APLSAKIDP 314

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 46.9 bits (111), Expect = 2e-05
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 6/67 (8%)

Query: 302 STKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMY 361
            T+   +G     TC          +W K  +G  +       E+ L ++ +K  D GMY
Sbjct: 315 PTQTVDFGRPAVFTCQYTGNPIKTVSWMK--DGKAIG----HSESVLRIESVKKEDKGMY 368

Query: 362 VCKVSNK 368
            C V N 
Sbjct: 369 QCFVRND 375

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 46.5 bits (110), Expect = 2e-05
 Identities = 11/108 (10%), Positives = 25/108 (23%), Gaps = 11/108 (10%)

Query: 295 APAF--NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSK---------RSNGHVLPFGAFS 343
            P F   P +  +    +   + C        E  W +              +   G   
Sbjct: 3   GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLV 62

Query: 344 RENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
                     +   A +Y C   N+  ++    + +       +    
Sbjct: 63  FPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADV 110

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386

 Score = 47.5 bits (112), Expect = 1e-05
 Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 8/69 (11%)

Query: 144 NNC-INNGLCQD--AATRIGYTCICPPGF----SGDRCSVLGEPCYPGACGDGSCQDVDG 196
            NC +NNG C       R    C C  G+     G  C  + E    G C    C + +G
Sbjct: 4   ENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYC-SQGCTNSEG 62

Query: 197 AMKCLCPIG 205
           A +C C  G
Sbjct: 63  AFQCWCEAG 71

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386

 Score = 42.8 bits (100), Expect = 3e-04
 Identities = 15/73 (20%), Positives = 22/73 (30%), Gaps = 10/73 (13%)

Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGG----MCKV 626
           C          C           C+C TGY      +    C   + C   G     C  
Sbjct: 6   CNVNNGGCAQKCQMIR---GAVQCTCHTGYRLTEDGR---TCQDVNECAEEGYCSQGCTN 59

Query: 627 TPDSYECLCSLGY 639
           +  +++C C  GY
Sbjct: 60  SEGAFQCWCEAGY 72

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 21/112 (18%), Positives = 36/112 (32%), Gaps = 19/112 (16%)

Query: 295 APAF-NPVSTKEAPYGSKITLTCNNDLEA----PVEYTWSKRSNGHVLPFGAFSR----- 344
              F   VS +E   G    + C              +W    +   +   + +R     
Sbjct: 2   MLTFREVVSPQEFKQGEDAEVVC----RVSSSPAPAVSWLY--HNEEVTTISDNRFAMLA 55

Query: 345 ENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVP---LFTQKPLS 393
            N L +  I  SD G+Y C+   +         ++V  +VP      QK  +
Sbjct: 56  NNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFN 107

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 44.4 bits (105), Expect = 4e-05
 Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 9/83 (10%)

Query: 293 NDAPAF---NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFG---AFSREN 346
           N  PA           A  G ++T +C          +W +  NG ++           N
Sbjct: 94  NVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFR--NGKLIEENEKYILKGSN 151

Query: 347 -TLTLQEIKNSDAGMYVCKVSNK 368
             LT++ I NSD G YVC+ +NK
Sbjct: 152 TELTVRNIINSDGGPYVCRATNK 174

>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A Length = 162

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 14/46 (30%), Positives = 17/46 (36%), Gaps = 3/46 (6%)

Query: 569 PVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMK 614
             C    C   G C  T  +   Y CSC  G+ G  CE   +   K
Sbjct: 120 ASCQDMSCSKQGECLETIGN---YTCSCYPGFYGPECEYVRDDDDK 162

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 25/112 (22%), Positives = 39/112 (34%), Gaps = 21/112 (18%)

Query: 295 APAF-NPVSTKEAPYGSKITLTCNNDLEA---PV-EYTWSKRSNGHVLPFGAFSR----- 344
           AP F  P+ +     GS  T            PV E +W +  +G V+            
Sbjct: 5   APTFTQPLQSVVVLEGSTATFEA----HISGFPVPEVSWFR--DGQVISTSTLPGVQISF 58

Query: 345 ---ENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSV--PLFTQKP 391
                 LT+  +  +++G Y  K +N        + LLV      P F Q+ 
Sbjct: 59  SDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRL 110

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 47.1 bits (111), Expect = 1e-05
 Identities = 18/104 (17%), Positives = 32/104 (30%), Gaps = 7/104 (6%)

Query: 286 SATPLYSNDAPAFNPV-STKEAPYGSKITLTCNN-DLEAPVEYTWSKRSNGHVLPFGA-- 341
                +    P+  P            I L C     +     TW K  N   L      
Sbjct: 119 GIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYK--NNQELIIDGTK 176

Query: 342 FSREN-TLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSV 384
           +S+    L +   +  D+G Y C V   D+ ++   ++     +
Sbjct: 177 YSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKIL 220

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 44.8 bits (105), Expect = 7e-05
 Identities = 14/93 (15%), Positives = 25/93 (26%), Gaps = 14/93 (15%)

Query: 302 STKEAPYGSKITLTC----NNDLEAPVEYTWSK---------RSNGHVLPFGAFSRENTL 348
                  G    +TC     + L   V   W                +L       E TL
Sbjct: 236 PKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATL 295

Query: 349 TLQEIKNSDAGM-YVCKVSNKDMTVEIPSILLV 380
             + +     G  Y C+  N      + + +++
Sbjct: 296 YFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL 328

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 41.7 bits (97), Expect = 6e-04
 Identities = 16/128 (12%), Positives = 39/128 (30%), Gaps = 9/128 (7%)

Query: 273 IREKHMEFRFDTGSATPLYSNDAPAFNPVSTKEAPYGSKITLTCNNDLEAPVEYTWS--- 329
           I E   + R    +    + N +  F       A  G   +  C    ++ + + ++   
Sbjct: 8   ITEFFNKMRDTLPAKDSKWLNPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKD 67

Query: 330 -----KRSNGHVLPFGAFSRENTLTLQEIKNSDAG-MYVCKVSNKDMTVEIPSILLVTDS 383
                ++      P     +   L +    ++D+   Y+C V+ K+       +      
Sbjct: 68  NVVNWEKIGKTRRPLNRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRK 127

Query: 384 VPLFTQKP 391
            P    + 
Sbjct: 128 PPSCIPET 135

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 47.4 bits (112), Expect = 1e-05
 Identities = 22/109 (20%), Positives = 33/109 (30%), Gaps = 11/109 (10%)

Query: 309 GSKITLTCNNDLEA-------PVEYTWSKRSNGHVLPFGAFSR----ENTLTLQEIKNSD 357
           G  + L C              +  TW K  +   +P    +R    +  L L      D
Sbjct: 33  GEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQED 92

Query: 358 AGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKPLSYLALPTLTDAHLH 406
           +G YVC   N     ++   L V ++   F         L   T   L 
Sbjct: 93  SGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLV 141

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 45.1 bits (106), Expect = 7e-05
 Identities = 15/111 (13%), Positives = 34/111 (30%), Gaps = 20/111 (18%)

Query: 299 NPVSTKEAPYGSKITLTCNNDLEAPV-----EYTWSKRSNGHVLP-----FGAFSRENTL 348
                +     +   L C +  E        +  W K  +  +L      F +      L
Sbjct: 125 FISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYK--DSLLLDKDNEKFLSVRGTTHL 182

Query: 349 TLQEIKNSDAGMYVCKVSNKDM--------TVEIPSILLVTDSVPLFTQKP 391
            + ++   DAG Y C ++            ++E+       +++P+     
Sbjct: 183 LVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPL 233

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 46.7 bits (111), Expect = 1e-05
 Identities = 18/99 (18%), Positives = 30/99 (30%), Gaps = 14/99 (14%)

Query: 302 STKEAPYGSKITLTCNNDLEA---PVEYTWSKRSNGHVLPFGAFSR------ENTLTLQE 352
           S  E   G     TC     A   P    W     G  +              + LT+  
Sbjct: 12  SKVELSVGESKFFTC----TAIGEPESIDWYNP-QGEKIISTQRVVVQKEGVRSRLTIYN 66

Query: 353 IKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
               DAG+Y C+ ++     +  +++L       F +  
Sbjct: 67  ANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVV 105

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 46.0 bits (109), Expect = 3e-05
 Identities = 23/117 (19%), Positives = 38/117 (32%), Gaps = 19/117 (16%)

Query: 295 APAF-NPVSTKEAPYGSKITLTCNNDLEA---PV-EYTWSKRSNGHVLPFGAFSR----- 344
              F   VS +E   G    + C         P    +W    +   +   + +R     
Sbjct: 98  KLTFREVVSPQEFKQGEDAEVVC----RVSSSPAPAVSWLY--HNEEVTTISDNRFAMLA 151

Query: 345 ENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVP---LFTQKPLSYLALP 398
            N L +  I  SD G+Y C+   +         ++V  +VP      QK  +  A  
Sbjct: 152 NNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAER 208

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 41.7 bits (98), Expect = 5e-04
 Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 9/81 (11%)

Query: 295 APAF---NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFG---AFSREN-T 347
            PA           A  G ++T +C          +W +  NG ++           N  
Sbjct: 192 PPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFR--NGKLIEENEKYILKGSNTE 249

Query: 348 LTLQEIKNSDAGMYVCKVSNK 368
           LT++ I NSD G YVC+ +NK
Sbjct: 250 LTVRNIINSDGGPYVCRATNK 270

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 12/91 (13%)

Query: 283 DTGSATPLYSNDAPAFNPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGA- 341
              S   +++ + PA   V  +    G+  TL+C    +A  E TW K  +G  L   + 
Sbjct: 3   SGSSGKVVFAKEQPAHREVQAEA---GASATLSCEVA-QAQTEVTWYK--DGKKLSSSSK 56

Query: 342 --FSREN---TLTLQEIKNSDAGMYVCKVSN 367
                      L +Q+   ++AG Y C+   
Sbjct: 57  VRVEAVGCTRRLVVQQAGQAEAGEYSCEAGG 87

>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus} Length = 525

 Score = 47.4 bits (112), Expect = 2e-05
 Identities = 20/94 (21%), Positives = 30/94 (31%), Gaps = 21/94 (22%)

Query: 135 CNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCS-------VLGEP------- 180
           C +C  +          C D+ T     C C    +G RC         L          
Sbjct: 438 CKSCACNPLGTIPGGNPC-DSETG---YCYCKRLVTGQRCDQCLPQHWGLSNDLDGCRPC 493

Query: 181 -CYPGACGDGSCQDVDGAMKCLCPIGTAGKRCEQ 213
            C  G   + SC +  G  +C C     G++C +
Sbjct: 494 DCDLGGALNNSCSEDSG--QCSCLPHMIGRQCNE 525

>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus} Length = 525

 Score = 46.6 bits (110), Expect = 3e-05
 Identities = 20/112 (17%), Positives = 30/112 (26%), Gaps = 34/112 (30%)

Query: 130 VGVDSCNTCK----------SSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRC----- 174
             +   N C+          +    +   +      A +    C C     G+RC     
Sbjct: 370 RDIRDPNLCEPCTCDPAGSENGGICDGYTDFSVGLIAGQ----CRCKLHVEGERCDVCKE 425

Query: 175 ------SVLGEPCYPGAC-------GDGSCQDVDGAMKCLCPIGTAGKRCEQ 213
                 +     C   AC       G   C    G   C C     G+RC+Q
Sbjct: 426 GFYDLSAEDPYGCKSCACNPLGTIPGGNPCDSETGY--CYCKRLVTGQRCDQ 475

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 45.8 bits (108), Expect = 2e-05
 Identities = 16/94 (17%), Positives = 32/94 (34%), Gaps = 12/94 (12%)

Query: 295 APAFNPVS-TKEAPYGSKITLTCNNDLEAPV-EYTWSKRSNGHVLPFGAFSREN--TLTL 350
            P+            G+   L C     +   ++ W K S+   +P    +      +++
Sbjct: 121 KPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISV 180

Query: 351 QEIKNSDAGMYVCKVSNK--------DMTVEIPS 376
           +   +  +G Y C V N+         + V  PS
Sbjct: 181 KNASSEYSGTYSCTVQNRVGSDQCMLRLDVVPPS 214

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 40.4 bits (94), Expect = 9e-04
 Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 1/76 (1%)

Query: 318 NDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSI 377
           +  +    Y    +   H       S + ++ +  ++ SD G Y CKV           +
Sbjct: 56  SGDKIYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFL 115

Query: 378 LLVTDSVPLFTQKPLS 393
           L V    P  T+  + 
Sbjct: 116 LTVL-VKPSGTRCFVD 130

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A Length = 118

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 14/72 (19%), Positives = 18/72 (25%), Gaps = 12/72 (16%)

Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGG---MCKVT 627
           C    C+    C      +  Y C C  G++    E           C        C   
Sbjct: 7   CFRANCEY--QC--QPLDQTSYLCVCAEGFAPIPHEPHRCQM----FCNQTACPADCDPN 58

Query: 628 PDSYECLCSLGY 639
                C C  GY
Sbjct: 59  T-QASCECPEGY 69

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A Length = 118

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 19/81 (23%), Positives = 27/81 (33%), Gaps = 17/81 (20%)

Query: 562 CSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYS---GDHCEKENNMCMKGDVC 618
           C    +   C P  C                +C C  GY    G  C  + + C  G  C
Sbjct: 42  CQMFCNQTAC-PADCDPNT----------QASCECPEGYILDDGFICT-DIDECENGGFC 89

Query: 619 KNGGMCKVTPDSYECLCSLGY 639
              G+C   P ++EC+C    
Sbjct: 90  --SGVCHNLPGTFECICGPDS 108

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 25/89 (28%), Positives = 33/89 (37%), Gaps = 17/89 (19%)

Query: 295 APAFNPV-STKEAPYGSKITLTCN-NDLEAPVEYTWSKRSNGHVLPFGAFSREN------ 346
            P+   V     A  G++  LTC+  D   P EYTW K  +G V+P    S         
Sbjct: 107 PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFK--DGIVMPTNPKSTRAFSNSSY 164

Query: 347 -------TLTLQEIKNSDAGMYVCKVSNK 368
                   L    +  SD G Y C+  N 
Sbjct: 165 VLNPTTGELVFDPLSASDTGEYSCEARNG 193

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 13/79 (16%), Positives = 26/79 (32%), Gaps = 7/79 (8%)

Query: 309 GSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSREN-----TLTLQEIKNSDAGMYVC 363
           G ++ L      +   +  W+K   G  L                 +++   SD+G Y  
Sbjct: 39  GEQLNLVVPFQGKPRPQVVWTK--GGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYEL 96

Query: 364 KVSNKDMTVEIPSILLVTD 382
            V  ++M       + V +
Sbjct: 97  SVQIENMKDTATIRIRVVE 115

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 11/60 (18%), Positives = 17/60 (28%), Gaps = 7/60 (11%)

Query: 309 GSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCKVSNK 368
               TLTC        E    +  +G  L          +   +   S +  + C   NK
Sbjct: 115 CINTTLTCEVMNGTDPELNLYQ--DGKHLKL-----SQRVITHKWTTSLSAKFKCTAGNK 167

>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens} Length = 121

 Score = 43.8 bits (103), Expect = 2e-05
 Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 18/95 (18%)

Query: 309 GSKITLTCNNDLEAPVE-YTWSKRSNGHVLPFGAFSREN----------------TLTLQ 351
           GS +TL  +  L    +  TW    +  ++ + +   +                  L + 
Sbjct: 19  GSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYIS 78

Query: 352 EIKNSDAGMYVCKVSNKDMTVEIPSILL-VTDSVP 385
           +++  D   Y+ +V  K    +   I L V D VP
Sbjct: 79  KVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVP 113

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 17/103 (16%), Positives = 36/103 (34%), Gaps = 16/103 (15%)

Query: 295 APAF-NPVSTKEAPYGSKITLTCNNDLEA---PV-EYTWSKRSNGHVLP----FGAFSRE 345
           AP     +  +    G  I ++C     A   P  +  W K  +   L            
Sbjct: 10  APTITGNLENQTTSIGESIEVSC----TASGNPPPQIMWFK--DNETLVEDSGIVLKDGN 63

Query: 346 NTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFT 388
             LT++ ++  D G+Y C+  +     ++ +  ++ +     T
Sbjct: 64  RNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFII-EGAQEKT 105

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 19/105 (18%), Positives = 32/105 (30%), Gaps = 14/105 (13%)

Query: 295 APAF-NPVSTKEAPYGSKITLTCNNDLEA---PV-EYTWSKRSNGHVLPFGA---FSREN 346
            P       T+    G  + +TC    +A   P     W K  N   +         ++ 
Sbjct: 110 FPVITQGPGTRVIEVGHTVLMTC----KAIGNPTPNIYWIK--NQTKVDMSNPRYSLKDG 163

Query: 347 TLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
            L ++  +  D G Y C   N   T    +  L      + T+  
Sbjct: 164 FLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRRVGTKHH 208

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 46.1 bits (109), Expect = 2e-05
 Identities = 27/130 (20%), Positives = 43/130 (33%), Gaps = 16/130 (12%)

Query: 296 PAFNPVSTKEAPYGSKITLTCNNDLEA---PV-EYTWSK-----RSNGHVLPFGAFSREN 346
           P          P  + +   C     A   P    +W K     R    +       ++ 
Sbjct: 125 PERMDKKLLAVPAANTVRFRC----PAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQW 180

Query: 347 TLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKPLSYLALPTLTDAHLH 406
           +L ++ +  SD G Y C V NK  ++     L V +  P    +P+    LP    A L 
Sbjct: 181 SLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSP---HRPILQAGLPANQTAVLG 237

Query: 407 FSIELSFKPT 416
             +E   K  
Sbjct: 238 SDVEFHCKVY 247

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 44.6 bits (105), Expect = 9e-05
 Identities = 16/129 (12%), Positives = 35/129 (27%), Gaps = 7/129 (5%)

Query: 294 DAPAFNPVSTKE--APYGSKITLTCNNDLEAPV-EYTWSKRSNGHVLPFGAFSREN--TL 348
           + P   P   ++     G  + L+C      P+    W K  +G  L            L
Sbjct: 6   EVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVK--DGTGLVPSERVLVGPQRL 63

Query: 349 TLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKPLSYLALPTLTDAHLHFS 408
            +    + D+G Y C+       +   S+ +         +          +     +++
Sbjct: 64  QVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWT 123

Query: 409 IELSFKPTD 417
                    
Sbjct: 124 RPERMDKKL 132

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A Length = 143

 Score = 43.7 bits (103), Expect = 3e-05
 Identities = 24/100 (24%), Positives = 31/100 (31%), Gaps = 27/100 (27%)

Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSG---------------DHCEKENNMCMKG 615
           CA   C     C           C C  G+S                + C   + +    
Sbjct: 5   CAR-WCPQDSSCVNA------TACRCNPGFSSFSEIITTPMETCDDINECATLSKVS--- 54

Query: 616 DVCKNGGMCKVTPDSYECLCSLGYAPPNCAKRVSIGSEVH 655
             C     C  T  SY+C+CS GY P + AK     SE  
Sbjct: 55  --CGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENT 92

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A Length = 143

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 17/84 (20%), Positives = 26/84 (30%), Gaps = 16/84 (19%)

Query: 136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGD------- 188
           N C +    +C     C +  T   Y C+C PG+     +   +      C D       
Sbjct: 45  NECATLSKVSCGKFSDCWN--TEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSG 102

Query: 189 -------GSCQDVDGAMKCLCPIG 205
                    C +  G+  C C  G
Sbjct: 103 QHQCDSSTVCFNTVGSYSCRCRPG 126

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A Length = 143

 Score = 40.2 bits (94), Expect = 5e-04
 Identities = 22/88 (25%), Positives = 29/88 (32%), Gaps = 27/88 (30%)

Query: 575 PCQNYGICYPTDTSERGYNCSCLTGYSG------------------DHCEKENNMCMKGD 616
            C  +  C+ T+ S   Y+C C  GY                    D C    + C    
Sbjct: 54  SCGKFSDCWNTEGS---YDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSST 110

Query: 617 VCKNGGMCKVTPDSYECLCSLGYAPPNC 644
           VC N      T  SY C C  G+ P + 
Sbjct: 111 VCFN------TVGSYSCRCRPGWKPRHG 132

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 9/98 (9%)

Query: 292 SNDAPAF-NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSR-----E 345
           S+  P      + +         L C    +     +W K   G   P G   R     +
Sbjct: 5   SSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLK--EGFTFP-GRDPRATIQEQ 61

Query: 346 NTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDS 383
            TL ++ ++ SD G Y C  ++        ++L VT+S
Sbjct: 62  GTLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVTES 99

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 7/41 (17%)

Query: 4  IKWSRADGLPLQ----RYA--EGNVLRITNARLQDSGKYKC 38
          I W + +G        R    E   L+I N R+ D+G Y C
Sbjct: 40 ISWLK-EGFTFPGRDPRATIQEQGTLQIKNLRISDTGTYTC 79

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400

 Score = 46.0 bits (108), Expect = 3e-05
 Identities = 38/176 (21%), Positives = 58/176 (32%), Gaps = 15/176 (8%)

Query: 136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPPGF--SGDRCSVLGEPCY-PGACGDGSCQ 192
           N C     NN   + +C D   +IGY C+CP GF     R     + C  P  C    C 
Sbjct: 1   NECLD---NNGGCSHVCND--LKIGYECLCPDGFQLVAQRRCEDIDECQDPDTC-SQLCV 54

Query: 193 DVDGAMKCLCPIGTA----GKRCEQKIKILQPAFKHGSYLAYPTPKTMRKFKVSLRLNP- 247
           +++G  KC C  G       K C+    I    F +   +   T        +   L   
Sbjct: 55  NLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNV 114

Query: 248 -RDVRDGIILYSGQSDDGLGDFISLAIREKHMEFRFDTGSATPLYSNDAPAFNPVS 302
                +        SD       S  +   H    +DT  +  + + D  A + + 
Sbjct: 115 VALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 170

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400

 Score = 44.1 bits (103), Expect = 1e-04
 Identities = 14/67 (20%), Positives = 21/67 (31%), Gaps = 7/67 (10%)

Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGY--SGDHCEKENNMCMKGDVCKNGGMCKVTP 628
           C         +C        GY C C  G+        ++ + C   D C    +C    
Sbjct: 3   CLDNNGGCSHVCNDLKI---GYECLCPDGFQLVAQRRCEDIDECQDPDTC--SQLCVNLE 57

Query: 629 DSYECLC 635
             Y+C C
Sbjct: 58  GGYKCQC 64

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 45.5 bits (107), Expect = 3e-05
 Identities = 13/69 (18%), Positives = 20/69 (28%), Gaps = 9/69 (13%)

Query: 309 GSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSREN---------TLTLQEIKNSDAG 359
           G  ITL C       V + W+             +             L +   +  D+G
Sbjct: 196 GENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSG 255

Query: 360 MYVCKVSNK 368
            Y C V+  
Sbjct: 256 TYTCNVTES 264

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 45.1 bits (106), Expect = 5e-05
 Identities = 18/100 (18%), Positives = 24/100 (24%), Gaps = 14/100 (14%)

Query: 300 PVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSREN-----TLTLQEIK 354
           P         S   LTC           W +       P      ++      LTL  + 
Sbjct: 6   PGPELVLNVSSTFVLTC----SGSAPVVWER--MSQEPPQEMAKAQDGTFSSVLTLTNLT 59

Query: 355 NSDAGMYVCKVSNKDMTVEIPSILL---VTDSVPLFTQKP 391
             D G Y C  ++           L   V D    F    
Sbjct: 60  GLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPND 99

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A* Length = 634

 Score = 46.2 bits (109), Expect = 4e-05
 Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 15/79 (18%)

Query: 571 CAPKPCQNYGICYPTDTSERGYNC-SCLTGYSGDH--------CEKENNMCMKGDVCKNG 621
           C   PC     C  +   +  ++C  C  G+ G+         C    ++C         
Sbjct: 6   CLSNPCFPGAQC--SSFPDGSWSCGFCPVGFLGNGTHCEDLDECALVPDIC---FSTSKV 60

Query: 622 GMCKVTPDSYECL-CSLGY 639
             C  T   + CL C   Y
Sbjct: 61  PRCVNTQPGFHCLPCPPRY 79

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 44.5 bits (104), Expect = 4e-05
 Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 6/70 (8%)

Query: 299 NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDA 358
           + V   +      + LTC+   EA    TW K  +G ++ F     +    L        
Sbjct: 8   HLVKVYDYQEDGSVLLTCD--AEAK-NITWFK--DGKMIGFLT-EDKKKWNLGSNAKDPR 61

Query: 359 GMYVCKVSNK 368
           GMY CK S  
Sbjct: 62  GMYQCKGSQN 71

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 13/82 (15%)

Query: 305 EAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGA---FSREN---TLTLQEIKNSDA 358
                 ++ LTC          TW K  +G  +          +     L L E K  D+
Sbjct: 21  TFTTSERVVLTCELS-RVDFPATWYK--DGQKVEESELLVVKMDGRKHRLILPEAKVQDS 77

Query: 359 GMYVCKVSNK----DMTVEIPS 376
           G + C+         +TV+ PS
Sbjct: 78  GEFECRTEGVSAFFGVTVQDPS 99

>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A Length = 157

 Score = 43.6 bits (103), Expect = 5e-05
 Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 3/39 (7%)

Query: 569 PVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEK 607
             C    C  +G C  T  +   Y C C  G+SG  CE+
Sbjct: 120 AACTNTSCSGHGECVETINN---YTCKCDPGFSGLKCEQ 155

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 44.2 bits (104), Expect = 5e-05
 Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 18/90 (20%)

Query: 295 APAFNPVST-KEAPYGSKITLTCN-NDLEAPVEYTWSKRSNGHVLPFGAFSREN------ 346
            P+   +S       G++  LTC+ +D   P EY+W K  +G  +      +        
Sbjct: 104 PPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFK--DGISMLTADAKKTRAFMNSS 161

Query: 347 --------TLTLQEIKNSDAGMYVCKVSNK 368
                    L    +   D+G Y C+  N 
Sbjct: 162 FTIDPKSGDLIFDPVTAFDSGEYYCQAQNG 191

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 42.0 bits (99), Expect = 6e-05
 Identities = 16/88 (18%), Positives = 30/88 (34%), Gaps = 18/88 (20%)

Query: 295 APAF-----NPVSTKEAPYGSKITLTCNNDLEA---PV-EYTWSK-----RSNGHVLPFG 340
           AP +             P  + +   C     A   P+    W K     +    +  + 
Sbjct: 4   APYWTNTEKMEKRLHAVPAANTVKFRC----PAGGNPMPTMRWLKNGKEFKQEHRIGGYK 59

Query: 341 AFSRENTLTLQEIKNSDAGMYVCKVSNK 368
             ++  +L ++ +  SD G Y C V N+
Sbjct: 60  VRNQHWSLIMESVVPSDKGNYTCVVENE 87

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 44.5 bits (105), Expect = 6e-05
 Identities = 20/102 (19%), Positives = 30/102 (29%), Gaps = 21/102 (20%)

Query: 305 EAPYGSKITLTCNNDLEA----PVEYTWSKRSNGHVLPFGAFSREN-------TLTLQEI 353
             P  + +   C     A        +W K  NG                   +L ++ +
Sbjct: 26  AVPAANTVRFRC----PAAGNPTPSISWLK--NGREFRGEHRIGGIKLRHQQWSLVMESV 79

Query: 354 KNSDAGMYVCKVSNKDMTVEIPSILLVTDSV----PLFTQKP 391
             SD G Y C V NK  ++     L V +       L    P
Sbjct: 80  VPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLP 121

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 44.7 bits (105), Expect = 6e-05
 Identities = 18/97 (18%), Positives = 26/97 (26%), Gaps = 5/97 (5%)

Query: 300 PVSTKEAPYGSKITLTCN-NDLEAPVEYTWSKRSNGHVLPFGAFSR----ENTLTLQEIK 354
                 +         C  N  E     TW K  +   +     SR    +  L     K
Sbjct: 11  EKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAK 70

Query: 355 NSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
             D+G Y C V N    + I       ++ P      
Sbjct: 71  VEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNA 107

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 42.0 bits (98), Expect = 5e-04
 Identities = 12/104 (11%), Positives = 26/104 (25%), Gaps = 13/104 (12%)

Query: 299 NPVSTKEAPYGSKITLTCNNDLEAPV------EYTWSKRSNGHVLPFGAFSR---ENTLT 349
             +  ++ P      L C              +  W    +   L          ++ L 
Sbjct: 108 QAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQW--YKDCKPLLLDNIHFSGVKDRLI 165

Query: 350 LQEIKNSDAGMYVCKVSNKDMTVE--IPSILLVTDSVPLFTQKP 391
           +  +     G Y C  S   +  +  I  ++           +P
Sbjct: 166 VMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRP 209

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 41.5 bits (98), Expect = 7e-05
 Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 9/76 (11%)

Query: 300 PVSTKEAPYGSKITLTCN-NDLEAPVEYTWSKRSNGHVLPFGA---FSREN---TLTLQE 352
            +       G  +   C   + +   + TW        L        + E+    L +++
Sbjct: 7   QIMHAVGEEGGHVKYVCKIENYDQSTQVTWYF--GVRQLENSEKYEITYEDGVAILYVKD 64

Query: 353 IKNSDAGMYVCKVSNK 368
           I   D G Y CKV N 
Sbjct: 65  ITKLDDGTYRCKVVND 80

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 41.9 bits (99), Expect = 7e-05
 Identities = 19/98 (19%), Positives = 29/98 (29%), Gaps = 9/98 (9%)

Query: 292 SNDAPAF-NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVL-PFGAFSREN--- 346
            +  P        ++   G  + L        P+  TW K      +        EN   
Sbjct: 4   GSSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMK--FRKQIQESEHMKVENSEN 61

Query: 347 --TLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTD 382
              LT+   +    G Y   V NK  + +    L V D
Sbjct: 62  GSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVD 99

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 43.6 bits (103), Expect = 7e-05
 Identities = 22/119 (18%), Positives = 40/119 (33%), Gaps = 23/119 (19%)

Query: 295 APAF-NPVSTKEAPYGSKITLTCNNDLEA----PVEYTWSKRSNGH-VLPFGAFSR---- 344
           AP F   +      Y S  TL C    +          W +   G  ++  G   R    
Sbjct: 4   APHFKEELRNLNVRYQSNATLVC----KVTGHPKPIVKWYR--QGKEIIADGLKYRIQEF 57

Query: 345 ---ENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLV----TDSVPLFTQKPLSYLA 396
               + L +  + + DA +Y  + +N+  +V   + L V       +P   +   +  A
Sbjct: 58  KGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHA 116

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 41.2 bits (97), Expect = 7e-05
 Identities = 14/93 (15%), Positives = 27/93 (29%), Gaps = 9/93 (9%)

Query: 295 APAF-NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLP----FGAFSREN--T 347
            P         +   G    L  +         TW+                 ++ +  +
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTV--GDSGAALAPELLVDAKSSTTS 59

Query: 348 LTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLV 380
           +     K +D+G Y  KV N+    E    ++V
Sbjct: 60  IFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A Length = 139

 Score = 42.2 bits (99), Expect = 8e-05
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 18  AEGNV-LRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNVE 57
            EG V LRI N R  D G Y C  +   S++    V+L VE
Sbjct: 81  GEGKVALRIQNVRFSDEGGYTCFFR-DHSYQEEAAVELKVE 120

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 44.7 bits (106), Expect = 9e-05
 Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 6/73 (8%)

Query: 300 PVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSR-----ENTLTLQEIK 354
                    G  +   C  D + P    W      H++   +  R     + TL ++  +
Sbjct: 391 KAQQVFVDEGHTVQFVCRADGDPPPAILW-LSPRKHLVSAKSNGRLTVFPDGTLEVRYAQ 449

Query: 355 NSDAGMYVCKVSN 367
             D G Y+C  +N
Sbjct: 450 VQDNGTYLCIAAN 462

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 9e-05
 Identities = 83/552 (15%), Positives = 138/552 (25%), Gaps = 186/552 (33%)

Query: 106 FKGCVSRLKYNKTEFELFKMAVERVGVDSCNTCKSSKHNNCINNGLCQDAATRIGYTCIC 165
           +     RL YN  +    K  V R+           +    +   L +          I 
Sbjct: 112 YIEQRDRL-YNDNQ-VFAKYNVSRL-----------QPYLKLRQALLEL--RPAKNVLID 156

Query: 166 PPGFSGDRC--SVL-GEPCYPGACGDGSCQDVDGAMKCLCPIG----TAGKRC--EQKIK 216
             G  G     + +  +           C      ++C                 E  ++
Sbjct: 157 --GVLG--SGKTWVALD----------VCLSYK--VQCKMDFKIFWLNLKNCNSPETVLE 200

Query: 217 ILQ-------PAFKHGSYLAYPTPKTMRKFKVSLR------LNPR------DVRDGIIL- 256
           +LQ       P +   S  +      +   +  LR                +V++     
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260

Query: 257 -YSGQS-------DDGLGDFISLA----IREKHMEFRFDTGSATPLYSN----------- 293
            ++             + DF+S A    I   H            L              
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320

Query: 294 DAPAFNPV-------STKEAP--------YG----SKITLTCNNDLEAPVEYTWSKRSNG 334
           +    NP        S ++                + I  +  N LE P EY    R   
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE-PAEY----RKM- 374

Query: 335 HVLPFGAFS--RENTL----TLQ----EIKNSDAGMYVCKVSN--------KDMTVEIPS 376
               F   S    +       L     ++  SD  + V K+          K+ T+ IPS
Sbjct: 375 ----FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430

Query: 377 ILLVTDSVPLFTQKPLSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGK 436
           I L               L +    +  LH SI        YN    +  D  +  Y   
Sbjct: 431 IYLE--------------LKVKLENEYALHRSI-----VDHYNIPKTFDSDDLIPPY--- 468

Query: 437 GDFVSFGLEDGYPVFRFDVG--LVVLR--SKVTLVPHEWVVVTIIKDFK--EGKLSVGGE 490
                    D Y  +   +G  L  +    ++TL         +  DF+  E K+     
Sbjct: 469 --------LDQY-FYSH-IGHHLKNIEHPERMTLFRM------VFLDFRFLEQKIRHDST 512

Query: 491 PLIVGSTPGEKLQVLNLRTPLYLGGYNIY----HVTPSLSVEVTEGFHGCISTIDVLGSE 546
                 +    LQ L          Y  Y           V     F   I    +    
Sbjct: 513 AWNASGSILNTLQQLKF--------YKPYICDNDPKYERLVNAILDFLPKIEENLICSKY 564

Query: 547 LDLINSAVDSAN 558
            DL+  A+ + +
Sbjct: 565 TDLLRIALMAED 576

>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster} Length = 58

 Score = 39.9 bits (93), Expect = 1e-04
 Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 3/41 (7%)

Query: 137 TCKSSKHNN-CINNGLCQ--DAATRIGYTCICPPGFSGDRC 174
            C  +     C+N+  C     A    Y+C C  GF G RC
Sbjct: 6   KCPETFDAWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRC 46

>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A Length = 63

 Score = 40.1 bits (93), Expect = 1e-04
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 3/40 (7%)

Query: 138 CKSSKHNNCINNGLC---QDAATRIGYTCICPPGFSGDRC 174
           C   +   C+N G C   +D +    Y C C PGF+G RC
Sbjct: 6   CAEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARC 45

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 17/105 (16%), Positives = 29/105 (27%), Gaps = 8/105 (7%)

Query: 292 SNDAPAF-NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGA----FSREN 346
           S+  P        +         L+C           W K  +G ++             
Sbjct: 5   SSGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRK--DGVLVSTQDSRIKQLENG 62

Query: 347 TLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
            L ++  K  D G Y C  S         + + V +   +  Q P
Sbjct: 63  VLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEF-GVPVQPP 106

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 39.4 bits (92), Expect = 6e-04
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 7/41 (17%)

Query: 4  IKWSRADGLPLQ----RYA--EGNVLRITNARLQDSGKYKC 38
          I W + DG+ +     R    E  VL+I  A+L D+G+Y C
Sbjct: 40 ILWRK-DGVLVSTQDSRIKQLENGVLQIRYAKLGDTGRYTC 79

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 43.7 bits (102), Expect = 1e-04
 Identities = 23/122 (18%), Positives = 36/122 (29%), Gaps = 29/122 (23%)

Query: 275 EKHMEFRFDTGSATPLYSNDAPAF----NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSK 330
               EF  D  S     +   P+     +     +   G+ IT+TC     A    TW  
Sbjct: 113 SIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYT 172

Query: 331 RSN-------------GHVLPFGA------------FSRENTLTLQEIKNSDAGMYVCKV 365
                            +   FG             FS    L ++  K +DAG   C++
Sbjct: 173 GPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCEL 232

Query: 366 SN 367
           + 
Sbjct: 233 AT 234

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 43.0 bits (101), Expect = 1e-04
 Identities = 14/86 (16%), Positives = 27/86 (31%), Gaps = 7/86 (8%)

Query: 288 TPLYSNDAPAFNPVSTKEAPYGSKITLTCN-NDLEAPVEYTWSKRSNGHVLPFGA-FSRE 345
                   P F    + E      + L C   +++      W K  +   +        +
Sbjct: 110 QEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYK--DEREISVDEKHDFK 167

Query: 346 N---TLTLQEIKNSDAGMYVCKVSNK 368
           +   TL + E    DAG+Y   + + 
Sbjct: 168 DGICTLLITEFSKKDAGIYEVILKDD 193

>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A Length = 50

 Score = 39.4 bits (92), Expect = 1e-04
 Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 1/39 (2%)

Query: 136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRC 174
           + C     + CI  G C+        +C+C  G+ G RC
Sbjct: 6   SRCPKQYKHYCIK-GRCRFVVAEQTPSCVCDEGYIGARC 43

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 15/94 (15%), Positives = 31/94 (32%), Gaps = 13/94 (13%)

Query: 305 EAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGA----FSREN---TLTLQEIKNSD 357
           +   GS  T  C           W    +   L         ++      LTL+++   D
Sbjct: 24  DVQEGSSATFRCRISPANYEPVHWFL--DKTPLHANELNEIDAQPGGYHVLTLRQLALKD 81

Query: 358 AGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
           +G    +  ++  +      L VT+   +F++  
Sbjct: 82  SGTIYFEAGDQRASAA----LRVTEKPSVFSRSG 111

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 40.8 bits (95), Expect = 2e-04
 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 14/80 (17%)

Query: 302 STKEAPYGSKITLTC--NNDLEAPVEYTW----------SKRSNGHVLPFGAFSRENT-- 347
            T+ A  GS ++ TC   +  ++P+ + W             +  H+   G    E T  
Sbjct: 18  ETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTI 77

Query: 348 LTLQEIKNSDAGMYVCKVSN 367
           L L+ ++ +  G Y C +SN
Sbjct: 78  LRLRNVEFTSEGXYQCVISN 97

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 43.3 bits (101), Expect = 2e-04
 Identities = 20/105 (19%), Positives = 32/105 (30%), Gaps = 11/105 (10%)

Query: 290 LYSNDAPAFN-PVSTKEAPYGSKITLTCN-NDLEAPVEYTWSKRSNGHVLPFG---AFSR 344
           L     PA         +  G  +TLTC   + E      W                   
Sbjct: 1   LAPRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVL--RKPAAGSHPSRWAGM 58

Query: 345 ENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQ 389
              L L+ ++  D+G Y C  + +       ++ L+ D  P   Q
Sbjct: 59  GRRLLLRSVQLHDSGNYSCYRAGRPAG----TVHLLVDVPPEEPQ 99

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 20/102 (19%), Positives = 31/102 (30%), Gaps = 21/102 (20%)

Query: 305 EAPYGSKITLTCNNDLEA---PV-EYTWSKRSNGHVLPFGAFSREN-------TLTLQEI 353
             P  + +   C     A   P+    W K  NG                   +L ++ +
Sbjct: 30  AVPAANTVKFRC----PAGGNPMPTMRWLK--NGKEFKQEHRIGGYKVRNQHWSLIMESV 83

Query: 354 KNSDAGMYVCKVSNKDMTVEIPSILLVTDSV----PLFTQKP 391
             SD G Y C V N+  ++     L V +       L    P
Sbjct: 84  VPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLP 125

>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* 3krk_A* ... Length = 587

 Score = 43.6 bits (102), Expect = 2e-04
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)

Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCL-TGYSGDHCEKENNM 611
           C   PCQN G C    T    Y C C  TG+ G++C     +
Sbjct: 4   CCSNPCQNRGEC--MSTGFDQYKCDCTRTGFYGENCTTPEFL 43

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 12/60 (20%), Positives = 17/60 (28%), Gaps = 7/60 (11%)

Query: 309 GSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCKVSNK 368
            S  TLTC       VE    +      L           T+     +    + CK  N+
Sbjct: 110 CSNATLTCEVLEGTDVELKLYQ--GKEHLRSL-----RQKTMSYQWTNLRAPFKCKAVNR 162

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 43.3 bits (101), Expect = 2e-04
 Identities = 26/156 (16%), Positives = 40/156 (25%), Gaps = 19/156 (12%)

Query: 229 AYPTPK-TMRKFKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKHMEFRFDTGSA 287
           A+P  K T+             +     L +   D+G   F   A  E   +      + 
Sbjct: 307 AHPRAKVTLNGVPAQPLGPRAQLL----LKATPEDNG-RSFSCSATLEVAGQLIHKNQTR 361

Query: 288 TPLYSNDAPAFNPVSTKE---APYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSR 344
             L     P  +          P  S+ T  C        E    K      LP G    
Sbjct: 362 E-LRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKD-GTFPLPIG---- 415

Query: 345 ENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLV 380
                   +     G Y+C+  +    V     + V
Sbjct: 416 ----ESVTVTRDLEGTYLCRARSTQGEVTREVTVNV 447

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A Length = 186

 Score = 41.9 bits (97), Expect = 2e-04
 Identities = 19/115 (16%), Positives = 34/115 (29%), Gaps = 9/115 (7%)

Query: 536 CISTIDVLGSELDLINSAVDSANIMDCSDL-ESSPVCAPKPCQNYGIC--YPTDTSERGY 592
            +           + N  +   +   C +  E         C  +G C   P       Y
Sbjct: 18  LVQMS---NHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIENPDPAQVNMY 74

Query: 593 NCSCLTGYSGDHCEKENNMCMKGDVCKNGG---MCKVTPDSYECLCSLGYAPPNC 644
            C C+ GY+        ++C   +  ++G           S  C C++G  P   
Sbjct: 75  XCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSCAIGXVPNPE 129

>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein, membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A {Homo sapiens} Length = 164

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 3/36 (8%)

Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCE 606
           C P  C  +G C     +   Y C+C  GY G  C+
Sbjct: 122 CQPWSCSGHGECVEIINN---YTCNCDVGYYGPQCQ 154

>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A Length = 50

 Score = 38.3 bits (89), Expect = 3e-04
 Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 1/39 (2%)

Query: 136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRC 174
           N C  S    C + G C+         C+C  G+ G RC
Sbjct: 6   NDCPDSHTQFCFH-GTCRFLVQEDKPACVCHSGYVGARC 43

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 19/91 (20%), Positives = 29/91 (31%), Gaps = 16/91 (17%)

Query: 284 TGSATPLYSNDAPAF-NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGA- 341
           +GS+ P       A   P+  +    G  + L C     A     W K  +   +     
Sbjct: 3   SGSSGP------AAIIKPLEDQWVAPGEDVELRCELS-RAGTPVHWLK--DRKAIRKSQK 53

Query: 342 --FSREN---TLTLQEIKNSDAGMYVCKVSN 367
                E     L ++     DAG Y C+V  
Sbjct: 54  YDVVCEGTMAMLVIRGASLKDAGEYTCEVEA 84

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 17/90 (18%)

Query: 300 PVSTKEAPYGSKITLTCN-NDLEAPVEYTWSKRSNGHVLPFGAFSR--------ENTLTL 350
            +    A  G ++ L C  ++ +A V   W K  NG  +  G  SR        ++ L +
Sbjct: 13  QLEDTTAYCGERVELECEVSEDDANV--KWFK--NGEEIIPGPKSRYRIRVEGKKHILII 68

Query: 351 QEIKNSDAGMYVCKVSNK----DMTVEIPS 376
           +    +DA  Y    +       ++V++ S
Sbjct: 69  EGATKADAAEYSVMTTGGQSSAKLSVDLKS 98

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 42.6 bits (99), Expect = 3e-04
 Identities = 21/118 (17%), Positives = 34/118 (28%), Gaps = 31/118 (26%)

Query: 305 EAPYGSKITLTCN---NDLEAPVEYTWSKRSNGH-------------------------- 335
               G    + C+    + +   +  W   S  H                          
Sbjct: 129 RVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRN 188

Query: 336 -VLPFGAFSREN-TLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
            V   G  SR + ++ LQ +K SD G+Y C +    +      +L V       T  P
Sbjct: 189 RVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQRTISP 246

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 13/75 (17%), Positives = 19/75 (25%), Gaps = 11/75 (14%)

Query: 300 PVSTKEAPYGSKITLTCNNDLEAP-VEYTWSKRSNGHVLPFGA---FSREN---TLTLQE 352
           P+   E   G         +L  P V   W     G  L          +     L L  
Sbjct: 11  PLYGVEVFVGETAHFEI--ELSEPDVHGQWKL--KGQPLAASPDCEIIEDGKKHILILHN 66

Query: 353 IKNSDAGMYVCKVSN 367
            +    G    + +N
Sbjct: 67  CQLGMTGEVSFQAAN 81

>2i9a_A Urokinase-type plasminogen activator; growth factor-like domain, kringle domain, hydrolase; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 2i9b_A* Length = 145

 Score = 40.7 bits (94), Expect = 3e-04
 Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 1/66 (1%)

Query: 570 VCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKE-NNMCMKGDVCKNGGMCKVTP 628
           V +   C N G C         + C+C   + G HCE + +  C +G+     G      
Sbjct: 9   VPSNCDCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDKSKTCYEGNGHFYRGKASTDT 68

Query: 629 DSYECL 634
               CL
Sbjct: 69  MGRPCL 74

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 42.6 bits (100), Expect = 4e-04
 Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 5/72 (6%)

Query: 302 STKEAPYGSKITLTCNNDLEAPVEYTWSK-----RSNGHVLPFGAFSRENTLTLQEIKNS 356
                  G  + LTCN   + P E +W K      S+ H        R    T+  +  +
Sbjct: 230 DVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTA 289

Query: 357 DAGMYVCKVSNK 368
           D+G Y   V NK
Sbjct: 290 DSGKYGLVVKNK 301

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 41.4 bits (97), Expect = 7e-04
 Identities = 17/109 (15%), Positives = 30/109 (27%), Gaps = 8/109 (7%)

Query: 295 APAFNPVSTKEAPYGSKITLTCNNDLEAPV-EYTWSKRSNGHVLPFGA----FSRENTLT 349
            P F    + E      + L C            W K  +   +             TL 
Sbjct: 7   GPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYK--DEREISVDEKHDFKDGICTLL 64

Query: 350 LQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKPLSYLALP 398
           + E    DAG+Y   + +     +    L+   +      +    +AL 
Sbjct: 65  ITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE-AFKELMMEVCKKIALS 112

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.5 bits (100), Expect = 4e-04
 Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 5/105 (4%)

Query: 299 NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGA----FSRENTLTLQEIK 354
              S  EA  G  +T+ C+   +  +   W   SN  VL  G+      R   L  ++++
Sbjct: 251 YKESAWEAHLGDTLTIRCDTKQQ-GMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQ 309

Query: 355 NSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKPLSYLALPT 399
             D G+Y C    +     +   L V +         L+  A P 
Sbjct: 310 VEDGGVYTCYAMGETFNETLSVELKVYNFTLHGHHDTLNAAADPW 354

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 41.8 bits (98), Expect = 4e-04
 Identities = 20/111 (18%), Positives = 25/111 (22%), Gaps = 17/111 (15%)

Query: 295 APAF--NPVSTKEAPYGSKITLTCNNDLEAPV-EYTWSKRSNGHVLPFGAFSREN----- 346
              F   P  T     G    L C      P     W K  +G  L              
Sbjct: 108 RDDFRVEPKDT-RVAKGETALLECGPPKGIPEPTLIWIK--DGVPLDDLKAMSFGASSRV 164

Query: 347 ------TLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
                  L +  ++  D G Y C   N   T E     L+           
Sbjct: 165 RIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKAAAHHHH 215

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 41.8 bits (98), Expect = 4e-04
 Identities = 18/107 (16%), Positives = 28/107 (26%), Gaps = 13/107 (12%)

Query: 302 STKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENT----------LTLQ 351
           +          TL C  + +      W K  +G  +                     T+Q
Sbjct: 17  TDLVVKKNEPATLNCKVEGKPEPTIEWFK--DGEPVSTNEKKSHRVQFKDGALFFYRTMQ 74

Query: 352 EIKNSDAGMYVCKVSNKD-MTVEIPSILLVTDSVPLFTQKPLSYLAL 397
             K  D G Y C   N+    V   + L +      F  +P      
Sbjct: 75  GKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVA 121

>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A Length = 46

 Score = 37.9 bits (88), Expect = 4e-04
 Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 1/37 (2%)

Query: 138 CKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRC 174
           C S  +  C++ G C          C C  G++G RC
Sbjct: 6   CSSDMNGYCLH-GQCIYLVDMSQNYCRCEVGYTGVRC 41

>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex (toxin-growth factor), diphtheria toxin, receptor, H binding epidermal growth factor; 2.65A {Homo sapiens} SCOP: g.3.11.1 Length = 79

 Score = 38.6 bits (89), Expect = 5e-04
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 128 ERVGVDSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRC 174
            +      + C     + CI+ G C+        +CIC PG+ G+RC
Sbjct: 30  GKGLGKKRDPCLRKYKDFCIH-GECKYVKELRAPSCICHPGYHGERC 75

>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ... Length = 553

 Score = 42.7 bits (100), Expect = 5e-04
 Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 3/42 (7%)

Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCL-TGYSGDHCEKENNM 611
           C   PCQ+ GIC         Y C C  TGYSG +C      
Sbjct: 5   CCYYPCQHQGIC--VRFGLDRYQCDCTRTGYSGPNCTIPEIW 44

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 42.2 bits (98), Expect = 5e-04
 Identities = 14/101 (13%), Positives = 25/101 (24%), Gaps = 9/101 (8%)

Query: 300 PVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGA---------FSRENTLTL 350
           P   K   +   +    +    A +   W        L                ++ L  
Sbjct: 24  PARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWF 83

Query: 351 QEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
           +    +D G Y C + N     ++   L V      F    
Sbjct: 84  RPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPM 124

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 39.4 bits (92), Expect = 5e-04
 Identities = 21/118 (17%), Positives = 41/118 (34%), Gaps = 20/118 (16%)

Query: 285 GSATPLYSNDAPAFNPVSTK-----EAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPF 339
           GS+    S    +   V         A    ++ LTC        E  W+K  +G  +  
Sbjct: 1   GSSGS--SGTDVSSWIVYPSGKVYVAAVRLERVVLTCELCRPWA-EVRWTK--DGEEVVE 55

Query: 340 GA---FSREN---TLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKP 391
                  +E+    L L  ++  D+G Y+C++ ++  +      + VT+         
Sbjct: 56  SPALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDDESASFT----VTVTEPPVRIIYSG 109

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 40.8 bits (95), Expect = 6e-04
 Identities = 13/87 (14%), Positives = 23/87 (26%), Gaps = 13/87 (14%)

Query: 300 PVSTKEAPYGSKITLTCNNDLEAPVEYTWSK-------------RSNGHVLPFGAFSREN 346
           P        GS ++L C+ D     E    +                  +L       + 
Sbjct: 8   PKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKA 67

Query: 347 TLTLQEIKNSDAGMYVCKVSNKDMTVE 373
              +  ++  D+G Y C V        
Sbjct: 68  LFHIPSVQVRDSGQYRCLVICGAAWDY 94

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 12/88 (13%)

Query: 292 SNDAPAF--NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGA---FSREN 346
           S  +      P++ +    G +I L C  ++   +   W+K  NG  +         ++ 
Sbjct: 3   SGSSGLKILTPLTDQTVNLGKEICLKC--EISENIPGKWTK--NGLPVQESDRLKVVQKG 58

Query: 347 ---TLTLQEIKNSDAGMYVCKVSNKDMT 371
               L +      D G YV      ++T
Sbjct: 59  RIHKLVIANALTEDEGDYVFAPDAYNVT 86

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 38.9 bits (91), Expect = 7e-04
 Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 10/79 (12%)

Query: 296 PAF-NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGA---FSREN---TL 348
            AF     + E   GS        +  A V+  W +   G  +        + E    TL
Sbjct: 9   SAFSKKPRSVEVAAGSPAVFEAETE-RAGVKVRWQR--GGSDISASNKYGLATEGTRHTL 65

Query: 349 TLQEIKNSDAGMYVCKVSN 367
           T++E+  +D G Y     +
Sbjct: 66  TVREVGPADQGSYAVIAGS 84

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 38.9 bits (91), Expect = 7e-04
 Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 4   IKWSRADGLPLQ---RY---AEGNV--LRITNARLQDSGKYKCEIQGHDSFRGSDYVKLN 55
            KW + +G+ ++   R      G    L I + R +D G Y     G   +  S   KLN
Sbjct: 39  GKWYK-NGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDG---YALSLSAKLN 94

Query: 56  VERMMFVDGIGPFSG 70
                 +   GP SG
Sbjct: 95  FLE---IKVSGPSSG 106

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B Length = 126

 Score = 39.5 bits (92), Expect = 8e-04
 Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 2/40 (5%)

Query: 18  AEGNV-LRITNARLQDSGKYKCEIQGHDSFRGSDYVKLNV 56
             G+  + +TN +L D G Y+C+++       +  + L V
Sbjct: 85  KSGDASINVTNLQLSDIGTYQCKVK-KAPGVANKKIHLVV 123

>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen, glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A {Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4 Length = 105

 Score = 38.9 bits (90), Expect = 8e-04
 Identities = 16/81 (19%), Positives = 22/81 (27%), Gaps = 14/81 (17%)

Query: 570 VCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGD--HCEKENNMCMKGDVCKNGG----- 622
            C          CY            CL G+      C   +  C +     NGG     
Sbjct: 12  KCIDTNVPENAACYRYLDGTE--EWRCLLGFKEVGGKCVPASITCEE----NNGGCAPEA 65

Query: 623 MCKVT-PDSYECLCSLGYAPP 642
            C +      EC C+   + P
Sbjct: 66  ECTMDDKKEVECKCTKEGSEP 86

>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor, IG-like domain, immune system; 1.00A {Mus musculus} PDB: 2icc_A 2ice_S* 2icf_S* Length = 119

 Score = 39.2 bits (91), Expect = 8e-04
 Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 1/33 (3%)

Query: 14  LQRYAEGNV-LRITNARLQDSGKYKCEIQGHDS 45
           +     G+V L+I   ++ D   Y CE+     
Sbjct: 70  VSHKVPGDVSLQINTLQMDDRNHYTCEVTWQTP 102

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 39.1 bits (91), Expect = 9e-04
 Identities = 23/93 (24%), Positives = 32/93 (34%), Gaps = 16/93 (17%)

Query: 290 LYSNDAPAFNPVSTKEAPYGSKITLTCN-NDLEAPVEYTWSKRSNGHVLPFGAFSR---- 344
           L  N  P  +   T+ A +G K  + C       P    WS     +VL  G   R    
Sbjct: 9   LTVNGPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSW--KENVLESGTSGRYTVE 66

Query: 345 --------ENTLTLQEIKNSD-AGMYVCKVSNK 368
                    +TLT+  I  +D   +Y C   N 
Sbjct: 67  TISTEEGVISTLTISNIVRADFQTIYNCTAWNS 99

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	834
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	100.0
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	100.0
2wjs_A	608	Laminin subunit alpha-2; integrin, secreted, coile	100.0
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	100.0
2jd4_A	383	Laminin subunit alpha-1; basement membrane protein	100.0
1dyk_A	394	Laminin alpha 2 chain; metal binding protein; 2.0A	100.0
1h30_A	422	GAS6, growth-arrest-specific protein; laminin G-do	100.0
2wjs_A	608	Laminin subunit alpha-2; integrin, secreted, coile	100.0
3sh4_A	195	LG3 peptide; actin disassambly, integrin alpha12 B	99.97
1pz7_A	204	Agrin; structural protein; 1.42A {Gallus gallus} S	99.96
2jd4_A	383	Laminin subunit alpha-1; basement membrane protein	99.96
3v64_A	191	Low-density lipoprotein receptor-related protein;	99.96
1dyk_A	394	Laminin alpha 2 chain; metal binding protein; 2.0A	99.96
3pve_A	189	Agrin, AGRN protein; mRNA splicing, structural gen	99.95
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	99.95
2r16_A	182	Neurexin-1-alpha; beta-sandwich, cell adhesion, sp	99.94
1d2s_A	170	SHBG, sex hormone-binding globulin; steroid transp	99.94
1h30_A	422	GAS6, growth-arrest-specific protein; laminin G-do	99.94
2h0b_A	184	Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A	99.93
3bod_A	178	Neurexin-1-alpha; neurexin1D, LNS6, alternative sp	99.93
1f5f_A	205	SHBG, sex hormone-binding globulin; jellyroll, sig	99.93
2r1d_A	226	Neurexin-1-beta, neurexin I-beta; beta-sandwich, c	99.92
2r1b_A	220	Neurexin-1-beta, neurexin I-beta; beta-sandwich, c	99.92
3v64_A	191	Low-density lipoprotein receptor-related protein;	99.9
1pz7_A	204	Agrin; structural protein; 1.42A {Gallus gallus} S	99.9
3pve_A	189	Agrin, AGRN protein; mRNA splicing, structural gen	99.88
3sh4_A	195	LG3 peptide; actin disassambly, integrin alpha12 B	99.88
1d2s_A	170	SHBG, sex hormone-binding globulin; steroid transp	99.88
1f5f_A	205	SHBG, sex hormone-binding globulin; jellyroll, sig	99.84
2r16_A	182	Neurexin-1-alpha; beta-sandwich, cell adhesion, sp	99.83
3bod_A	178	Neurexin-1-alpha; neurexin1D, LNS6, alternative sp	99.82
2h0b_A	184	Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A	99.82
2r1b_A	220	Neurexin-1-beta, neurexin I-beta; beta-sandwich, c	99.78
2r1d_A	226	Neurexin-1-beta, neurexin I-beta; beta-sandwich, c	99.78
4fbr_A	267	Lectin, myxobacterial hemagglutinin; beta-barrel,	99.77
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	99.75
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	99.75
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	99.74
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	99.74
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	99.68
4fbr_A	267	Lectin, myxobacterial hemagglutinin; beta-barrel,	99.64
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	99.62
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	99.53
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	99.51
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	99.5
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	99.5
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	99.47
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	99.47
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	99.44
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	99.44
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	99.41
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	99.37
2bou_A	143	EGF-like module containing mucin-like hormone rece	99.37
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	99.34
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	99.32
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	99.3
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	99.29
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	99.28
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	99.28
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	99.28
2vh0_B	134	Activated factor XA light chain; serine protease,	99.27
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	99.27
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	99.25
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	99.24
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	99.23
1aut_L	114	Activated protein C; serine proteinase, plasma cal	99.2
2vh0_B	134	Activated factor XA light chain; serine protease,	99.19
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	99.19
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	99.19
3u7u_G	55	Neuregulin 1; signaling protein, transferase-trans	99.19
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	99.17
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	99.16
3u7u_G	55	Neuregulin 1; signaling protein, transferase-trans	99.15
1aut_L	114	Activated protein C; serine proteinase, plasma cal	99.12
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	99.11
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	99.11
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	99.08
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.06
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	99.01
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	99.0
2bou_A	143	EGF-like module containing mucin-like hormone rece	98.97
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	98.96
1hae_A	63	Heregulin-alpha; growth factor; NMR {Homo sapiens}	98.88
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	98.82
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	98.82
1a3p_A	45	Epidermal growth factor; disulfide connectivities,	98.78
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	98.76
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	98.75
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	98.71
1a3p_A	45	Epidermal growth factor; disulfide connectivities,	98.7
1egf_A	53	Epidermal growth factor; NMR {Mus musculus} SCOP:	98.69
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.66
3flp_A	217	SAP-like pentraxin; physiological doubly-stacked h	98.65
1k36_A	46	Epiregulin; EGF-like fold, hormone/growth factor c	98.65
1hae_A	63	Heregulin-alpha; growth factor; NMR {Homo sapiens}	98.64
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	98.64
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.62
4aqs_A	525	Laminin subunit beta-1; cell adhesion; HET: NAG BM	98.62
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.61
1egf_A	53	Epidermal growth factor; NMR {Mus musculus} SCOP:	98.61
2p28_B	217	Integrin beta-2; hybrid domain, PSI domain, I-EGF	98.6
1k36_A	46	Epiregulin; EGF-like fold, hormone/growth factor c	98.58
3kqr_A	204	Serum amyloid P-component; glycoprotein, disulfide	98.56
3ca7_A	52	Protein spitz; argos, EGF, developmental protein,	98.53
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.53
1nql_B	53	Epidermal growth factor; cell surface receptor, ty	98.52
3pvn_A	206	C-reactive protein; pentraxin family, immune syste	98.52
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	98.45
2k2s_B	61	Micronemal protein 6; microneme protein complex, c	98.45
3ca7_A	52	Protein spitz; argos, EGF, developmental protein,	98.44
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	98.44
2k2s_B	61	Micronemal protein 6; microneme protein complex, c	98.43
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	98.4
2fd6_A	122	Urokinase-type plasminogen activator; UPAR, ATF, A	98.39
2erf_A	209	Thrombospondin-1; TSP-1, N-terminal TSPN, HBD, sug	98.35
1za4_A	251	Thrombospondin 1; TSP-1, NTSP-1, HBD, arixtra, cel	98.34
2v73_A	191	CBM40, putative EXO-alpha-sialidase; carbohydrate-	98.33
2fd6_A	122	Urokinase-type plasminogen activator; UPAR, ATF, A	98.31
1nql_B	53	Epidermal growth factor; cell surface receptor, ty	98.3
2uur_A	245	Collagen alpha-1(IX) chain; glycoprotein, hydroxyl	98.15
4dqa_A	355	Uncharacterized protein; two domains structure, DU	98.06
4aqs_A	525	Laminin subunit beta-1; cell adhesion; HET: NAG BM	98.06
3ltf_D	58	Protein spitz; receptor-ligand complex ectodomain	98.04
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.98
3ltf_D	58	Protein spitz; receptor-ligand complex ectodomain	97.95
2p28_B	217	Integrin beta-2; hybrid domain, PSI domain, I-EGF	97.9
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.84
2i9a_A	145	Urokinase-type plasminogen activator; growth facto	97.82
3flp_A	217	SAP-like pentraxin; physiological doubly-stacked h	97.81
2i9a_A	145	Urokinase-type plasminogen activator; growth facto	97.79
1g1s_A	162	P-selectin; selectin, lectin, EGF, sulphated, SLEX	97.71
3e50_C	50	Protransforming growth factor alpha; IDE, TGF-alph	97.7
1q4g_A	553	Prostaglandin G/H synthase 1; cyclooxygenase, non-	97.66
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	97.63
3kqr_A	204	Serum amyloid P-component; glycoprotein, disulfide	97.63
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.62
3pvn_A	206	C-reactive protein; pentraxin family, immune syste	97.61
1q4g_A	553	Prostaglandin G/H synthase 1; cyclooxygenase, non-	97.61
1g1s_A	162	P-selectin; selectin, lectin, EGF, sulphated, SLEX	97.58
1klo_A	162	Laminin; glycoprotein; 2.10A {Mus musculus} SCOP:	97.56
3nt1_A	587	Prostaglandin-endoperoxide synthase 2; prostagland	97.53
1xdt_R	79	Hbegf, heparin-binding epidermal growth factor; co	97.5
3r08_E	82	T-cell surface glycoprotein CD3 epsilon chain; ant	97.5
1klo_A	162	Laminin; glycoprotein; 2.10A {Mus musculus} SCOP:	97.47
1iox_A	50	Betacellulin; EGF-like fold, hormone/growth factor	97.46
3nt1_A	587	Prostaglandin-endoperoxide synthase 2; prostagland	97.43
2rnl_A	50	Amphiregulin; AR, colorectum cell-derived growth f	97.43
2v73_A	191	CBM40, putative EXO-alpha-sialidase; carbohydrate-	97.43
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	97.39
1xau_A	122	B- and T-lymphocyte attenuator; IG domain, beta sa	97.37
2erf_A	209	Thrombospondin-1; TSP-1, N-terminal TSPN, HBD, sug	97.35
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	97.35
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	97.34
1za4_A	251	Thrombospondin 1; TSP-1, NTSP-1, HBD, arixtra, cel	97.32
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	97.31
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	97.31
2jkb_A	686	Sialidase B; intramolecular trans-sialidase, lyase	97.29
1apq_A	53	Complement protease C1R; EGF, calcium binding, ser	97.27
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	97.26
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	97.25
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	97.24
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	97.21
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	97.21
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	97.2
1xdt_R	79	Hbegf, heparin-binding epidermal growth factor; co	97.2
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	97.19
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	97.18
2sli_A	679	Intramolecular trans-sialidase; hydrolase, neurami	97.14
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	97.14
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	97.11
2aw2_A	120	B and T lymphocyte attenuator; IGI domain, IGG dom	97.1
2rnl_A	50	Amphiregulin; AR, colorectum cell-derived growth f	97.08
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	97.07
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	97.06
1he7_A	126	High affinity nerve growth factor receptor; transf	97.03
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	97.01
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	97.01
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	96.99
1g1t_A	157	E-selectin; EGF, adhesion molecule, SLEX, immune s	96.98
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	96.94
3e50_C	50	Protransforming growth factor alpha; IDE, TGF-alph	96.92
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	96.9
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	96.9
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	96.86
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	96.82
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	96.81
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	96.8
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	96.79
1g1t_A	157	E-selectin; EGF, adhesion molecule, SLEX, immune s	96.78
1iox_A	50	Betacellulin; EGF-like fold, hormone/growth factor	96.78
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	96.77
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	96.77
2ens_A	96	Advanced glycosylation END product-specific recept	96.74
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	96.73
2ygo_A	188	WIF-1, WNT inhibitory factor 1; signaling protein,	96.73
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	96.72
4dqa_A	355	Uncharacterized protein; two domains structure, DU	96.72
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	96.72
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	96.7
2uur_A	245	Collagen alpha-1(IX) chain; glycoprotein, hydroxyl	96.69
1a8d_A	452	Tetanus neurotoxin; clostridial, ganglioside bindi	96.67
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	96.64
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	96.64
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	96.64
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	96.61
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	96.61
1apq_A	53	Complement protease C1R; EGF, calcium binding, ser	96.59
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	96.59
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	96.57
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	96.56
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	96.56
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	96.55
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	96.54
2ygo_A	188	WIF-1, WNT inhibitory factor 1; signaling protein,	96.54
2qsq_A	111	Carcinoembryonic antigen-related cell adhesion MO;	96.52
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	96.51
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	96.51
4b1m_A	185	Levanase; hydrolase, CBM66; HET: FRU; 1.10A {Bacil	96.47
3cfw_A	164	L-selectin; EGF, cell adhesion, EGF-like domain, g	96.46
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	96.46
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	96.45
3cfw_A	164	L-selectin; EGF, cell adhesion, EGF-like domain, g	96.43
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	96.43
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	96.34
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	96.32
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	96.3
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	96.28
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	96.28
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	96.26
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	96.23
2jkh_L	55	Factor X light chain; plasma, calcium, zymogen, se	96.23
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	96.17
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	96.11
1gl4_A	285	Nidogen-1, entactin; immunoglobulin-like domain, e	96.08
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	96.04
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	96.02
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	96.01
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	96.0
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	95.89
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	95.87
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	95.84
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	95.82
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	95.81
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	95.79
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	95.78
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	95.78
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	95.77
2kl7_A	71	Fibulin-4; secreted, calcium, disease mutation, di	95.76
4hwn_A	108	FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG	95.73
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	95.72
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	95.72
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	95.71
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	95.71
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	95.69
1szb_A	170	Mannose binding lectin-associated serine protease-	95.68
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	95.65
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	95.64
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	95.59
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	95.59
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	95.59
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	95.54
4gos_A	125	V-SET domain-containing T-cell activation inhibit;	95.48
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	95.45
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	95.43
2vsd_A	105	CHIR AB1; immune system receptor, FC receptor; HET	95.42
1jhl_L	108	IGG1-kappa D11.15 FV (light chain); complex(antibo	95.42
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	95.41
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	95.35
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	95.33
2jkh_L	55	Factor X light chain; plasma, calcium, zymogen, se	95.32
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	95.29
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	95.24
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	95.24
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	95.23
2kl7_A	71	Fibulin-4; secreted, calcium, disease mutation, di	95.21
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	95.2
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	95.2
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	95.19
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	95.18
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	95.17
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	95.16
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	95.16
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	95.14
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	95.13
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	95.12
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	95.1
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	95.08
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	95.05
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	95.03
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	95.01
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	94.95
1ob1_C	99	Major merozoite surface protein; immune system, im	94.91
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	94.9
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	94.9
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	94.88
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	94.88
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	94.85
1gl4_A	285	Nidogen-1, entactin; immunoglobulin-like domain, e	94.76
4aqt_A	375	Laminin subunit gamma-1; cell adhesion; HET: NAG B	94.75
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	94.73
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	94.69
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	94.68
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	94.68
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	94.67
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	94.66
1ob1_C	99	Major merozoite surface protein; immune system, im	94.61
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	94.61
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	94.58
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	94.56
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	94.55
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	94.54
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	94.53
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	94.53
2oyp_A	109	Hepatitis A virus cellular receptor 2; TIM-3, T-ce	94.53
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	94.52
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	94.51
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	94.48
1szb_A	170	Mannose binding lectin-associated serine protease-	94.45
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	94.44
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	94.43
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	94.39
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	94.38
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	94.38
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	94.37
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	94.35
4gjt_B	123	Poliovirus receptor-related protein 4; six-bladed	94.32
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	94.28
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	94.23
2or8_A	116	Hepatitis A virus cellular receptor 1 homolog; bet	94.22
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	94.21
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	94.2
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	94.19
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	94.07
1qfw_M	108	FV, antibody (anti beta subunit) (light chain); gl	94.07
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	94.07
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	94.06
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	94.06
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	94.01
1h5b_A	113	Murine T cell receptor (TCR) valpha domain; immune	93.99
1mqk_L	120	Antibody 7E2 FV fragment, light chain; membrane pr	93.96
1kig_L	51	Factor XA; glycoprotein, serine protease, plasma,	93.94
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	93.94
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	93.93
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	93.89
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	93.88
3khq_A	133	B-cell antigen receptor complex-associated protei	93.86
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	93.85
1xt5_A	135	Variable region-containing chitin-binding protein	93.8
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	93.79
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	93.74
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	93.71
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	93.71
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	93.7
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	93.69
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	93.69
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	93.63
3v0a_B	1196	NTNH; botulinum neurotoxin, toxin, neurotoxin asso	93.59
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	93.56
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	93.54
2yz1_A	120	Tyrosine-protein phosphatase non-receptor type sub	93.52
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	93.51
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	93.51
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	93.51
2q20_A	109	VK1 O18/O8 germline light chain variable domain; A	93.44
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	93.44
2edo_A	121	CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte	93.44
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	93.43
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	93.42
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	93.35
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	93.34
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	93.32
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	93.25
1n1i_A	105	Merozoite surface protein-1; MSP1, malaria, surfac	93.23
1kli_L	69	Factor VIIA; extrinsic coagulation pathway, serine	93.23
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	93.23
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	93.22
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	93.2
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	93.19
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	93.18
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	93.02
2ywz_A	111	NEW antigen receptor variable domain; IG VNAR, imm	93.01
2jju_A	127	Signal regulatory protein beta-1; immunoglobulin d	93.0
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	93.0
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	93.0
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	92.99
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	92.97
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	92.97
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	92.94
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	92.91
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	92.9
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	92.84
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	92.84
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	92.8
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	92.8
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	92.78
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	92.76
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	92.75
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	92.75
2bz6_L	53	Blood coagulation factor VIIA; serine protease, en	92.72
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	92.72
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	92.71
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	92.71
2d9c_A	136	Signal-regulatory protein beta-1; beta-sandwich, S	92.65
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	92.63
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	92.62
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	92.58
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	92.57
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	92.56
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	92.55
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	92.55
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	92.51
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	92.49
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	92.49
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	92.46
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	92.43
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	92.42
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	92.38
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	92.36
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	92.36
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	92.36
2y38_A	403	Laminin subunit alpha-5; structural protein, cell	92.33
4b1m_A	185	Levanase; hydrolase, CBM66; HET: FRU; 1.10A {Bacil	92.31
1xiw_B	79	T-cell surface glycoprotein CD3 delta chain; CD3-e	92.31
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	92.28
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	92.28
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	92.23
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	92.22
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	92.18
1olz_A	663	Semaphorin 4D; developmental protein, CD100, beta-	92.13
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	92.09
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	92.01
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	92.01
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	91.99
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	91.98
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	91.97
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	91.93
1a8d_A	452	Tetanus neurotoxin; clostridial, ganglioside bindi	91.93
3noi_A	120	Natural cytotoxicity triggering receptor 3; immune	91.87
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	91.85
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	91.85
1kli_L	69	Factor VIIA; extrinsic coagulation pathway, serine	91.83
1n1i_A	105	Merozoite surface protein-1; MSP1, malaria, surfac	91.82
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	91.82
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	91.81
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	91.81
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	91.81
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	91.78
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	91.78
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	91.78
2e26_A	725	Reelin, reeler protein; signaling protein; HET: NA	91.78
3sob_L	237	Antibody light chain; beta propeller, protein bind	91.77
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	91.73
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	91.73
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	91.65
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	91.61
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	91.54
3ux9_B	256	SCFV antibody; five helices, long loop connecting	91.53
2jjs_C	127	Leukocyte surface antigen CD47; signal regulatory	91.45
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	91.37
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	91.34
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	91.34
2ptt_A	110	CD48 antigen; CD244, CD48, NK cell receptor, X-RAY	91.34
1nzi_A	159	Complement C1S component; calcium, innate immunity	91.32
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	91.31
2jkb_A	686	Sialidase B; intramolecular trans-sialidase, lyase	91.27
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	91.26
2p26_A	280	Integrin beta-2; hybrid domain, PSI domain, I-EGF	91.25
1ncn_A	110	T lymphocyte activation antigen CD86; IG V, beta s	91.23
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	91.15
3r0n_A	128	Poliovirus receptor-related protein 2; IG-domain,	91.13
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	91.12
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	91.12
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	91.11
2or7_A	115	T-cell immunoglobulin and mucin domain- containing	91.05
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	90.94
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	90.89
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	90.88
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	90.86
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	90.84
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	90.82
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	90.8
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	90.65
3moq_A	126	NEW antigen receptor variable domain, P3(40) PEPT	90.57
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	90.52
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	90.5
1i8k_A	107	Epidermal growth factor receptor antibody MR1SCFV	90.48
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	90.46
1neu_A	124	Myelin P0 protein; structural protein, glycoprotei	90.45
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	90.41
2sli_A	679	Intramolecular trans-sialidase; hydrolase, neurami	90.4
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	90.37
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	90.31
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	90.25
3t5o_A	913	Complement component C6; macpf, MAC, membrane atta	90.2
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	90.15
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	90.14
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	90.13
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	90.12
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	90.1
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	90.09

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*

Probab=100.00  E-value=1.5e-65  Score=641.10  Aligned_cols=658  Identities=21%  Similarity=0.350  Sum_probs=380.5

Q ss_pred             CceeEEEcCCcceeeeeCCcccCCCcceeeeeCCCCCCCcCCC------CccCCCCccceEEEEEEcCEEEEeecccccc
Q psy9228          56 VERMMFVDGIGPFSGESQGAFQGLDLSELVYIGAVPDFGEIHP------SAGFSNGFKGCVSRLKYNKTEFELFKMAVER  129 (834)
Q Consensus        56 ~~g~~cvd~~~~~~~~~~~~~~g~~~~~~~~~gg~p~~~~~~~------~~~~~~gf~gCi~~~~~~~~~~~~~~~~~~~  129 (834)
                      +++.|.||+.....-+.+.....++....+||||+|.......      ......+|.|||+++.++++++.+++.....
T Consensus        94 ~~~~L~Vd~~~~~~~~~~~~~~~~~~~~~l~vGG~p~~~~~~~~~l~~~~v~~~~~F~Gci~~l~~~~~~~~l~~~~~~~  173 (1245)
T 3qcw_A           94 RNTTLFIDQVEAKWVEVKSKRRDMTVFSGLFVGGLPPELRAAALKLTLASVREREPFKGWIRDVRVQSSLALPVDSGEVK  173 (1245)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CeEEEEECCccceeeeecCCcccccccCceeeeeCChHHhcccccccCccccccCCcceEEEEEEECCcccccccccCcc
Confidence            5778899995443344444455567778999999997654221      1223479999999999999987776532211


Q ss_pred             ---cCCCCCCccCCCCCCCCCCCCEeccCCCCCceEeeCCCCCCCCCCCCCCCCccCCCCCC-CeeecCCCCeEEeCCC-
Q psy9228         130 ---VGVDSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGD-GSCQDVDGAMKCLCPI-  204 (834)
Q Consensus       130 ---~~~~~c~~C~~~~~~pC~n~g~C~~~~~~~~~~C~C~~g~~G~~Ce~~~~~C~~~~C~~-g~C~~~~~~~~C~C~~-  204 (834)
                         .++.   .|.   .+||.                             ..++|..+||+| |+|+...++|.|.|+. 
T Consensus       174 ~~~~~~~---~~~---~~pC~-----------------------------~~~~~~~~~C~ngg~C~~~~~~~~C~C~~~  218 (1245)
T 3qcw_A          174 LDDEPPN---SGG---GSPCE-----------------------------AGEEGEGGVCLNGGVCSVVDDQAVCDCSRT  218 (1245)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccc---ccC---CCCcC-----------------------------CcccCCCCCCCCCCCCccCCCCceeECCCC
Confidence               1111   111   22222                             112455555554 3555555556666664 


Q ss_pred             CcccCcccccccccccCCCCcceEEcCCCCCc---ceEEEEEEEcccCCCceEEEeecccCCCCCCeEEEEEecCeEEEE
Q psy9228         205 GTAGKRCEQKIKILQPAFKHGSYLAYPTPKTM---RKFKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKHMEFR  281 (834)
Q Consensus       205 g~~G~~Ce~~~~~~~~~F~g~~y~~~~~~~~~---~~~~i~l~f~t~~~~~glll~~~~~~~~~~d~~~l~l~~G~v~~~  281 (834)
                      ||.|+.||+......+.|+|.+|+.|+.+...   ....|+|.|||. .++|||||.+..    .||++|+|++|+++++
T Consensus       219 g~~G~~Ce~~~~~~~~~F~G~~~~~y~~~~~~~~~~~~~i~l~FrT~-~~~GlLl~~g~~----~d~l~L~L~~G~l~l~  293 (1245)
T 3qcw_A          219 GFRGKDCSQGKEEYIATFKGSEYFCYDLSQNPIQSSSDEITLSFKTL-QRNGLMLHTGKS----ADYVNLALKNGAVSLV  293 (1245)
T ss_dssp             ------------CCEEEECSSCEEEEECTTSCEEESEEEEEEEEECS-CSCEEEEEECSS----SEEEEEEEETTEEEEE
T ss_pred             CccCCccccCcccceeeeCCcEEEEEccccCcccccccEEEEEEEeC-CCCceEEEecCC----CCEEEEEEECCEEEEE
Confidence            66666666544446789999999999876433   457899999999 699999999743    6999999999999999


Q ss_pred             EecCCCcc--eecC--CCCCccccc-ceeccCCCeEEEEecCCCCC----CceeeeeecCCCceeccccccccccccccc
Q psy9228         282 FDTGSATP--LYSN--DAPAFNPVS-TKEAPYGSKITLTCNNDLEA----PVEYTWSKRSNGHVLPFGAFSRENTLTLQE  352 (834)
Q Consensus       282 ~~~g~~~~--~~~~--~~~~~~~~~-~~~~~~~~~v~l~vd~~~~~----~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~  352 (834)
                      +++|++..  +...  .......|| +.+.|.+++++|+||.....    +..+..  ......+++||+|......   
T Consensus       294 ~~lG~g~~~~~~~~~~~~l~Dg~WH~V~v~r~~~~~~l~VD~~~~~~~~~~~~~~~--l~~~~~l~vGG~p~~~~~~---  368 (1245)
T 3qcw_A          294 INLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQVTISVDGILTTTGYTQEDYTM--LGSDDFFYVGGSPSTADLP---  368 (1245)
T ss_dssp             EEESSCCEEEEECCCSSCSSSSSCEEEEEEEETTEEEEEESSSCCEEEECSSSCCC--EEECSEEEESCCSSTTTST---
T ss_pred             EEcCCCeEEEEEccCCcccCCCCEEEEEEEEeCCEEEEEECCcceeeeecCCCccc--ccCCCCEEECCcCChhhcc---
Confidence            99998862  2222  233344455 55678899999999975421    111111  1123458899988543211   


Q ss_pred             cccCCCceEEEEeCCC----Ccee--------EeeEEe-------e---eeccccccCCCcccccccCCccccceeEEEE
Q psy9228         353 IKNSDAGMYVCKVSNK----DMTV--------EIPSIL-------L---VTDSVPLFTQKPLSYLALPTLTDAHLHFSIE  410 (834)
Q Consensus       353 ~~~~~~~~~~C~~~~~----~~~~--------~~~~~~-------~---~~~~~~~f~~~~~s~l~~~~~~~~~~~~~i~  410 (834)
                      ......++.+|+.+..    .+..        ..+...       .   .....|..|..+.||+.+|.+.. ...++|+
T Consensus       369 ~~~~~~~F~GCi~~l~~n~~~i~l~~~~~~~~~~~~~~~~g~~~~~C~~~~~~~~vsF~~~~syl~lp~~~~-~~~~~is  447 (1245)
T 3qcw_A          369 GSPVSNNFMGCLKEVVYKNNDVRLELSRLAKQGDPKMKIHGVVAFKCENVATLDPITFETPESFISLPKWNA-KKTGSIS  447 (1245)
T ss_dssp             TCCCCCCCCEEEEEEEEEESSCEECHHHHHHSCCTTEEEESSCCCCCSCCCCCCCEEECSTTCCEEECCCCC-SSEEEEE
T ss_pred             CCccCCCceeEeeeeEECCccccccchhhhhcCCCccccCCceeecccCCCccccceeCCCCeEEEecCCCc-cCceEEE
Confidence            1122346778876521    1000        000000       0   01123566677889999998864 4578999


Q ss_pred             EEEeeCCCCeeEEEeccCCc------cccCCCCCeEEEEEECcEEEEEEeccc--EEEE-eeeeecCCCeEEEEEEEECC
Q psy9228         411 LSFKPTDYNGLIMYTGDSNM------KSYKGKGDFVSFGLEDGYPVFRFDVGL--VVLR-SKVTLVPHEWVVVTIIKDFK  481 (834)
Q Consensus       411 ~~frt~~~~GlLl~~~~~~~------~~~~~~~d~~~l~L~~G~l~~~~~~G~--~~i~-s~~~~~dg~wH~V~v~~~~~  481 (834)
                      |+|||.+++|||||......      .......||++|+|.+|+++++++.|.  ..+. +..+++||+||+|.+.|..+
T Consensus       448 ~~FrT~~~~GlLly~~~~~~~~~~~~~~~~~~~df~~LeL~~G~l~l~~~~G~g~~~l~~s~~~vnDG~WH~V~l~r~~~  527 (1245)
T 3qcw_A          448 FDFRTTEPNGLILFSHGKPRHQKDAKHPQMIKVDFFAIEMLDGHLYLLLDMGSGTIKIKALQKKVNDGEWYHVDFQRDGR  527 (1245)
T ss_dssp             EEEECCCSCEEEEEEECCCCSSCCSSCTTSCCCCEEEEEEETTEEEEEEESSSCEEEEESCSSCCCSSCCEEEEEEEETT
T ss_pred             EEEEeCCCCeEEEEecCccccccccccccccCCCEEEEEEeCCeEEEEEECCCCeEEEeecccEecCCCEEEEEEEEecC
Confidence            99999999999999864321      011245799999999999999999984  4444 56789999999999999999


Q ss_pred             eEEEEECCeeeeeeecCCCccccccCCCceeeccccCCCcccCcC-----cccccCceeEEeeeEEcCeeeeecccc--c
Q psy9228         482 EGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTPSLS-----VEVTEGFHGCISTIDVLGSELDLINSA--V  554 (834)
Q Consensus       482 ~~~l~VD~~~~~~~~~~g~~~~~l~~~~~l~iGG~~~~~~~~~~~-----~~~~~gF~GCi~~v~ing~~~~~~~~~--~  554 (834)
                      .++|.||+..... ..++. ...|++..++||||+|........+     .....+|.|||++|.||++.+++....  .
T Consensus       528 ~~~L~VD~~~~~~-~~~~~-~~~l~~~~~lylGG~p~~~~~~~~p~~~~~~~~~~gF~GCir~l~ing~~~dl~~~~~~~  605 (1245)
T 3qcw_A          528 SGTISVNTLRTPY-TAPGE-SEILDLDDELYLGGLPENKAGLVFPTEVWTALLNYGYVGCIRDLFIDGQSKDIRQMAEVQ  605 (1245)
T ss_dssp             EEEEEETTEEEEE-ECSSS-CCCCCCCSCEEESSCCSSCTTCCCCTTCHHHHTTCBCCEEEEEEEETTEEECHHHHTTTT
T ss_pred             EEEEEEccccccc-ccCCC-cceeccCCceEEcccccccccccccccccccccccCceEEEEEEEECCEEcCchhhhhhh
Confidence            9999999976543 44555 6778899999999999853211111     123579999999999999999986532  1


Q ss_pred             ccCCc-ccCCCCCCCCCCCCCCCCCCCeecccCCCCCceeeecCCCCCCCCCccCccCCCCCCccCCCceeeecCCCcEE
Q psy9228         555 DSANI-MDCSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDSYEC  633 (834)
Q Consensus       555 ~~~~~-~~C~~~~~~~~C~~~pC~ngg~C~~~~~~~~~~~C~C~~G~~G~~Ce~~~~~C~~~~pC~ngg~C~~~~~~~~C  633 (834)
                      ...++ .+|...                                          ..+.|.++ ||+|+|+|.+.+.+|.|
T Consensus       606 ~~~gv~~gC~~~------------------------------------------~~~~C~~~-pC~ngg~C~~~~~~~~C  642 (1245)
T 3qcw_A          606 STAGVKPSCSRE------------------------------------------TAKPCLSN-PCKNNGMCRDGWNRYVC  642 (1245)
T ss_dssp             TCTTEESSCCCC------------------------------------------SSCGGGSC-CCCTTCEEEECSSSEEE
T ss_pred             cccccccccccc------------------------------------------CCCCCCcc-CCCCCCEEeCCCCCeEE
Confidence            12222 244310                                          11345555 77777777777777777


Q ss_pred             cCC-CCCCCCCcccccccceeeEEcCCceeeechhhhhhccCcceEEEEEEeCCCCeeEEecCCCCCCCCCCcceEEEEE
Q psy9228         634 LCS-LGYAPPNCAKRVSIGSEVHFLGEGYVELKKELIEERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAV  712 (834)
Q Consensus       634 ~C~-~g~~G~~Ce~~~~~~~~~~F~g~s~~~~~~~~~~~~~~~~~i~~~frT~~~~GlLl~~~~~~~~~~~~~~~~~l~l  712 (834)
                      .|+ +||+|+.|+.+.   ..+.|+|.+|+.+...... ......|+|+|||..++|+|||++...     ..||++|+|
T Consensus       643 ~C~~~g~~G~~C~~~~---~~~~fdGs~~l~~~~~~~~-~~~~~~isl~FrT~~~~GlLl~~~~~~-----~~d~l~L~L  713 (1245)
T 3qcw_A          643 DCSGTGYLGRSCEREA---TVLSYDGSMFMKIQLPVVM-HTEAEDVSLRFRSQRAYGILMATTSRD-----SADTLRLEL  713 (1245)
T ss_dssp             ECTTTTEESTTSCEEC---CEEEEESSCCEEEEEEEEE-EESEEEEEEEEECSSSCEEEEEEEBTT-----BSCEEEEEE
T ss_pred             ECCCCCcccccCcccc---cccccCCCCceEEeccccc-ccccceEEEEEEEcCCCEEEEEecCCC-----CccEEEEEE
Confidence            777 577777777653   2468999999876432221 135678999999999999999986532     368999999


Q ss_pred             ECCEEEEEEEcCCcEEEEEeCCceecCCCcEEEEEEEECCEEEEEEcCeeeecccCCCCccceecCCceEEcCcCCCCCC
Q psy9228         713 VNGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPNMDLM  792 (834)
Q Consensus       713 ~~G~l~~~~~~g~~~~~l~~s~~~~nDg~wH~V~i~r~~~~~~l~VD~~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~~~  792 (834)
                      .+|+|++++++|.++..+. +..+++||+||+|.+.|.++.++|+||+........++....++.. .+|+|+++.....
T Consensus       714 ~~G~l~l~~nlg~g~~~~~-~~~~~~DG~WH~V~v~r~~~~~~l~vD~~~~~~g~~~g~~~~l~~~-~~~~G~~~~~~~~  791 (1245)
T 3qcw_A          714 DAGRVKLTVNLGKGPETLF-AGYNLNDNEWHTVRVVRRGKSLKLTVDDQQAMTGQMAGDHTRLEFH-NIETGIITERRYL  791 (1245)
T ss_dssp             ETTEEEEEEESSSSEEEEE-ECSCCCSSSCEEEEEEEETTEEEEEETTSCCEEEECSSSCCCEEEE-EEEESSCCCCTTC
T ss_pred             eCCEEEEEEECCCCceEEE-eCccccCCCcEEEEEEEeCCEEEEEECCccceeEecCCCcceeecc-ccccccccccccc
Confidence            9999999999999888776 6788999999999999999999999999877666666655555443 4788988754222


Q ss_pred             CCCccCCCceEEEEEEEECCceecc
Q psy9228         793 TGGRYVHPMSGLMMNIHIQNKHISN  817 (834)
Q Consensus       793 ~~~~~~~~F~GCi~~v~in~~~~~~  817 (834)
                        .....+|+|||++|++|+..+++
T Consensus       792 --~~~~~~F~GCl~~v~~ng~~~~~  814 (1245)
T 3qcw_A          792 --SSVPSNFIGHLQSLTFNGMAYID  814 (1245)
T ss_dssp             --SCCCCCCEEEEEEEEETTEEHHH
T ss_pred             --CCCCCCCEEEeeeEEECCEEchh
Confidence              12345899999999999976544

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*

Probab=100.00  E-value=1.2e-64  Score=633.12  Aligned_cols=636  Identities=24%  Similarity=0.405  Sum_probs=429.5

Q ss_pred             CceeEEEcCCcceeeeeCCcccCCCcceeeeeCCCCCCCcC---CCC---ccCCCCccceEEEEEEcCEEEEeeccc--c
Q psy9228          56 VERMMFVDGIGPFSGESQGAFQGLDLSELVYIGAVPDFGEI---HPS---AGFSNGFKGCVSRLKYNKTEFELFKMA--V  127 (834)
Q Consensus        56 ~~g~~cvd~~~~~~~~~~~~~~g~~~~~~~~~gg~p~~~~~---~~~---~~~~~gf~gCi~~~~~~~~~~~~~~~~--~  127 (834)
                      +.+.|.||+... ....++....+++..++|+||+|.....   +..   .....||.|||+++.||++.+++....  .
T Consensus       527 ~~~~L~VD~~~~-~~~~~~~~~~l~~~~~lylGG~p~~~~~~~~p~~~~~~~~~~gF~GCir~l~ing~~~dl~~~~~~~  605 (1245)
T 3qcw_A          527 RSGTISVNTLRT-PYTAPGESEILDLDDELYLGGLPENKAGLVFPTEVWTALLNYGYVGCIRDLFIDGQSKDIRQMAEVQ  605 (1245)
T ss_dssp             TEEEEEETTEEE-EEECSSSCCCCCCCSCEEESSCCSSCTTCCCCTTCHHHHTTCBCCEEEEEEEETTEEECHHHHTTTT
T ss_pred             CEEEEEEccccc-ccccCCCcceeccCCceEEcccccccccccccccccccccccCceEEEEEEEECCEEcCchhhhhhh
Confidence            467888998643 3455667778899999999999975431   111   123579999999999999999885421  1


Q ss_pred             cccCC-CCC-----CccCCCCCCCCCCCCEeccCCCCCceEeeCC-CCCCCCCCCCCCCCccCCCCCCCeeecCCCCeEE
Q psy9228         128 ERVGV-DSC-----NTCKSSKHNNCINNGLCQDAATRIGYTCICP-PGFSGDRCSVLGEPCYPGACGDGSCQDVDGAMKC  200 (834)
Q Consensus       128 ~~~~~-~~c-----~~C~~~~~~pC~n~g~C~~~~~~~~~~C~C~-~g~~G~~Ce~~~~~C~~~~C~~g~C~~~~~~~~C  200 (834)
                      ...++ ..|     +.|.   ++||+|+|+|.+..  .+|.|.|+ +||+|.+|+                         
T Consensus       606 ~~~gv~~gC~~~~~~~C~---~~pC~ngg~C~~~~--~~~~C~C~~~g~~G~~C~-------------------------  655 (1245)
T 3qcw_A          606 STAGVKPSCSRETAKPCL---SNPCKNNGMCRDGW--NRYVCDCSGTGYLGRSCE-------------------------  655 (1245)
T ss_dssp             TCTTEESSCCCCSSCGGG---SCCCCTTCEEEECS--SSEEEECTTTTEESTTSC-------------------------
T ss_pred             ccccccccccccCCCCCC---ccCCCCCCEEeCCC--CCeEEECCCCCcccccCc-------------------------
Confidence            12232 234     3566   66666666666543  55666665 455555554                         


Q ss_pred             eCCCCcccCcccccccccccCCCCcceEEcCCCCCc--ceEEEEEEEcccCCCceEEEeecccCCCCCCeEEEEEecCeE
Q psy9228         201 LCPIGTAGKRCEQKIKILQPAFKHGSYLAYPTPKTM--RKFKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKHM  278 (834)
Q Consensus       201 ~C~~g~~G~~Ce~~~~~~~~~F~g~~y~~~~~~~~~--~~~~i~l~f~t~~~~~glll~~~~~~~~~~d~~~l~l~~G~v  278 (834)
                                  .+  .....|+|.+|+.+..+...  ....|+|.|+|. .++|+|||.+..  ...||++|+|.+|++
T Consensus       656 ------------~~--~~~~~fdGs~~l~~~~~~~~~~~~~~isl~FrT~-~~~GlLl~~~~~--~~~d~l~L~L~~G~l  718 (1245)
T 3qcw_A          656 ------------RE--ATVLSYDGSMFMKIQLPVVMHTEAEDVSLRFRSQ-RAYGILMATTSR--DSADTLRLELDAGRV  718 (1245)
T ss_dssp             ------------EE--CCEEEEESSCCEEEEEEEEEEESEEEEEEEEECS-SSCEEEEEEEBT--TBSCEEEEEEETTEE
T ss_pred             ------------cc--ccccccCCCCceEEecccccccccceEEEEEEEc-CCCEEEEEecCC--CCccEEEEEEeCCEE
Confidence                        33  23467899999876554322  457899999999 699999998753  236999999999999


Q ss_pred             EEEEecCCCcc-eecCCCCCccccc-ceeccCCCeEEEEecCCCCC----Cceee-eeecCCCceecccccccccccccc
Q psy9228         279 EFRFDTGSATP-LYSNDAPAFNPVS-TKEAPYGSKITLTCNNDLEA----PVEYT-WSKRSNGHVLPFGAFSRENTLTLQ  351 (834)
Q Consensus       279 ~~~~~~g~~~~-~~~~~~~~~~~~~-~~~~~~~~~v~l~vd~~~~~----~~~~~-~~~~~~~~~~~~gg~~~~~~~~~~  351 (834)
                      ++++++|.+.. +..........|| +...|.+..+.|+||+....    +.... +..    ..++.|+.+....+.  
T Consensus       719 ~l~~nlg~g~~~~~~~~~~~DG~WH~V~v~r~~~~~~l~vD~~~~~~g~~~g~~~~l~~----~~~~~G~~~~~~~~~--  792 (1245)
T 3qcw_A          719 KLTVNLGKGPETLFAGYNLNDNEWHTVRVVRRGKSLKLTVDDQQAMTGQMAGDHTRLEF----HNIETGIITERRYLS--  792 (1245)
T ss_dssp             EEEEESSSSEEEEEECSCCCSSSCEEEEEEEETTEEEEEETTSCCEEEECSSSCCCEEE----EEEEESSCCCCTTCS--
T ss_pred             EEEEECCCCceEEEeCccccCCCcEEEEEEEeCCEEEEEECCccceeEecCCCcceeec----ccccccccccccccC--
Confidence            99999988753 3344444555455 55678889999999975431    11110 000    012333333221111  


Q ss_pred             ccccCCCceEEEEeCCC--Cce----------eEeeEEee----eeccccccCCCcccccccCCccccceeEEEEEEEee
Q psy9228         352 EIKNSDAGMYVCKVSNK--DMT----------VEIPSILL----VTDSVPLFTQKPLSYLALPTLTDAHLHFSIELSFKP  415 (834)
Q Consensus       352 ~~~~~~~~~~~C~~~~~--~~~----------~~~~~~~~----~~~~~~~f~~~~~s~l~~~~~~~~~~~~~i~~~frt  415 (834)
                         ....++.+|+....  +..          ..|.....    .....|.+|.+..||+.+|.+... ..+.|+|+|||
T Consensus       793 ---~~~~~F~GCl~~v~~ng~~~~~~~~~g~~~~C~~~~~~g~~~~~~~~~~F~~~~sy~~~p~~~~~-~~~~is~~frT  868 (1245)
T 3qcw_A          793 ---SVPSNFIGHLQSLTFNGMAYIDLCKNGDIDYCELNARFGFRNIIADPVTFKTKSSYVALATLQAY-TSMHLFFQFKT  868 (1245)
T ss_dssp             ---CCCCCCEEEEEEEEETTEEHHHHHHTTSCSCEEECCEESCCCCCCSCEEECSTTCEEEESCCCCS-SCEEEEEEEEC
T ss_pred             ---CCCCCCEEEeeeEEECCEEchhhhhcCCccccccccccCccccccCCccccccccEEEcCCcccc-ceEEEEEEEEe
Confidence               11124556664321  100          01221110    112345566678899999987653 47899999999


Q ss_pred             CCCCeeEEEeccCCccccCCCCCeEEEEEECcEEEEEEecc--cEEE--EeeeeecCCCeEEEEEEEECCe-EEEEECCe
Q psy9228         416 TDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVG--LVVL--RSKVTLVPHEWVVVTIIKDFKE-GKLSVGGE  490 (834)
Q Consensus       416 ~~~~GlLl~~~~~~~~~~~~~~d~~~l~L~~G~l~~~~~~G--~~~i--~s~~~~~dg~wH~V~v~~~~~~-~~l~VD~~  490 (834)
                      .+++|+|||..+       ...||++|+|.+|++++.+++|  ...+  .+..+++||+||+|.+.|..+. ..|.||+.
T Consensus       869 ~~~~GlLly~~~-------~~~dfi~l~L~~G~l~~~~~~G~g~~~~~~~s~~~vnDg~WH~V~~~~~~~~~~~L~VD~~  941 (1245)
T 3qcw_A          869 TSLDGLILYNSG-------DGNDFIVVELVKGYLHYVFDLGNGANLIKGSSNKPLNDNQWHNVMISRDTSNLHTVKIDTK  941 (1245)
T ss_dssp             SCSCEEEEEEEE-------STTCEEEEEEETTEEEEEEESSSCCEEEECCCSSCSCSSSCEEEEEEECTTCEEEEEETTE
T ss_pred             CCCCEEEEEeCC-------CCCCEEEEEEeCCEEEEEEECCCCcEEEEecCcccccCCCeEEEEEEEeCCeeEEEEECCE
Confidence            999999999854       2479999999999999999987  3344  3778999999999999999864 68999997


Q ss_pred             eeeeeecCCCccccccCCCceeeccccCCCc-ccCcCcccccCceeEEeeeEEcCeeeeeccccccc-CCc-ccCCCCCC
Q psy9228         491 PLIVGSTPGEKLQVLNLRTPLYLGGYNIYHV-TPSLSVEVTEGFHGCISTIDVLGSELDLINSAVDS-ANI-MDCSDLES  567 (834)
Q Consensus       491 ~~~~~~~~g~~~~~l~~~~~l~iGG~~~~~~-~~~~~~~~~~gF~GCi~~v~ing~~~~~~~~~~~~-~~~-~~C~~~~~  567 (834)
                      ...... .+  ...|++..+|||||+|.... ..+.......+|.|||++|.||++.+++....... .++ .+|..  .
T Consensus       942 ~~~~~~-~~--~~~l~~~~~lylGG~p~~~~~~~~~~~~~~~~F~GCi~~l~ing~~~~l~~~~~~~~~~v~~gC~~--~ 1016 (1245)
T 3qcw_A          942 ITTQIT-AG--ARNLDLKSDLYIGGVAKETYKSLPKLVHAKEGFQGCLASVDLNGRLPDLISDALFCNGQIERGCEG--P 1016 (1245)
T ss_dssp             EEEEEC-CC--CCCCCEEEEEEESCCCGGGGGGCCTTCCCSSBCCEEEEEEEETTBCCCTTTTCSEEESCEEESSSC--C
T ss_pred             eeeecc-CC--cceeccCCCeEECcccccchhhhcccccccCCcEEEeeeEEECCEEcccccchhccccceeeeeec--c
Confidence            654322 22  34678888999999987421 11222334578999999999999988876543211 112 34542  1


Q ss_pred             CCCCCCCCCCCCCeecccCCCCCceeeecCCCCCCCCCccCccCCCCCCccCCCceeeecCCCcEEcCC-CCCCCCCccc
Q psy9228         568 SPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDSYECLCS-LGYAPPNCAK  646 (834)
Q Consensus       568 ~~~C~~~pC~ngg~C~~~~~~~~~~~C~C~~G~~G~~Ce~~~~~C~~~~pC~ngg~C~~~~~~~~C~C~-~g~~G~~Ce~  646 (834)
                      .+.|.++                                          ||+|+|+|.+.+++|.|.|+ ++|+|++|++
T Consensus      1017 ~~~C~~~------------------------------------------pC~ngG~C~~~~~~~~C~C~~~g~~G~~C~~ 1054 (1245)
T 3qcw_A         1017 STTCQED------------------------------------------SCSNQGVCLQQWDGFSCDCSMTSFSGPLCND 1054 (1245)
T ss_dssp             CCCCCTT------------------------------------------SSSSSCEEEEETTEEEEECTTSSCBSTTSCB
T ss_pred             cCceECC------------------------------------------cCCCCCEeCCCCCCCEEECCCCCCCCCCccC
Confidence            2344444                                          55555555555555555555 3555555554


Q ss_pred             ccccceeeEEc-CCceeeechhhh-hhccCcceEEEEEEeCCCCeeEEecCCCCCCCCCCcceEEEEEECCEEEEEEEcC
Q psy9228         647 RVSIGSEVHFL-GEGYVELKKELI-EERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLG  724 (834)
Q Consensus       647 ~~~~~~~~~F~-g~s~~~~~~~~~-~~~~~~~~i~~~frT~~~~GlLl~~~~~~~~~~~~~~~~~l~l~~G~l~~~~~~g  724 (834)
                      +..   .+.|. +.++++|..... ........|+|.|||++++|+|||+....    ...|||+|+|.||+|+++|++|
T Consensus      1055 ~~~---~~~f~~~~~~v~y~~~~~~~~~~~~~~i~l~FrT~~~~g~Ll~~~s~~----~~~~~l~l~l~~G~l~~~~~~g 1127 (1245)
T 3qcw_A         1055 PGT---TYIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSS----GLGDYLELHIHQGKIGVKFNVG 1127 (1245)
T ss_dssp             CCC---EEEEEEEEEEEEEECCTTCCCCBSEEEEEEEEEBCCSSEEEEEEEECT----TCCCEEEEEEETTEEEEEEESS
T ss_pred             CCc---eEEEcCCCcEEEEecCCCCccccccceEEEEEEEcCCCeEEEEEeccC----CCCceEEEEEECCEEEEEEECC
Confidence            432   34453 457887742211 11124578999999999999999986532    1259999999999999999999


Q ss_pred             CcEEEEEeCCceecCCCcEEEEEEEECCEEEEEEcCeeeecccCCCC-ccceecCCceEEcCcCCCCCCCCCccCCCceE
Q psy9228         725 DGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGS-QDVINTRGNIYLGGTPNMDLMTGGRYVHPMSG  803 (834)
Q Consensus       725 ~~~~~l~~s~~~~nDg~wH~V~i~r~~~~~~l~VD~~~~~~~~~~~~-~~~l~~~~~lyiGG~p~~~~~~~~~~~~~F~G  803 (834)
                      ++...+..+..+++||+||+|+|.|.++.++|+||+..+.....++. ...++....|||||.+.         ..+|.|
T Consensus      1128 ~~~~~~~~~~~~v~DG~wH~V~i~r~~~~~~l~VD~~~~~~~~~~g~~~~~~~~~~~l~lGg~~~---------~~~F~G 1198 (1245)
T 3qcw_A         1128 TDDIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKEQ---------GQPFQG 1198 (1245)
T ss_dssp             SCCEEEECCSCCCBSSSCEEEEEEEETTEEEEEETTSCCEEECCCSCCCCCBCSEEEEEESSTTT---------TCCCCE
T ss_pred             CCceEEecCCcEecCCCeEEEEEEECCCEEEEEECCeeeeeccCCcceeEEeccCceEEECCccC---------CCCCEE
Confidence            88777766788999999999999999999999999987654433332 23456677899999754         378999


Q ss_pred             EEEEEEECCceecccC
Q psy9228         804 LMMNIHIQNKHISNIG  819 (834)
Q Consensus       804 Ci~~v~in~~~~~~l~  819 (834)
                      ||++|++|+..++++.
T Consensus      1199 cls~v~~n~~~pl~~a 1214 (1245)
T 3qcw_A         1199 QLSGLYYNGLKVLNMA 1214 (1245)
T ss_dssp             EEEEEEETTBCHHHHH
T ss_pred             EEceEEECChHHHHHh
Confidence            9999999997655543

>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus}

Probab=100.00  E-value=6.8e-50  Score=466.69  Aligned_cols=502  Identities=17%  Similarity=0.206  Sum_probs=338.7

Q ss_pred             ccCCCCcceEEcCCCC-CcceEEEEEEEcccCCCceEEEeecccCCCCCCeEEEEEecCeEEEEEecCCCcc-eecC-CC
Q psy9228         219 QPAFKHGSYLAYPTPK-TMRKFKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKHMEFRFDTGSATP-LYSN-DA  295 (834)
Q Consensus       219 ~~~F~g~~y~~~~~~~-~~~~~~i~l~f~t~~~~~glll~~~~~~~~~~d~~~l~l~~G~v~~~~~~g~~~~-~~~~-~~  295 (834)
                      ...|+|++|+.|+.+. ......|+|+|||. .++|+|||.+..  ...||++|+|++|++++++++|++.. +... ..
T Consensus        12 ~~~F~g~~~~~y~p~~~~~~~~~isl~FrT~-~~~glLly~~~~--~~~dfl~l~L~~G~l~~~~~~G~g~~~l~~~~~~   88 (608)
T 2wjs_A           12 SVSSGGDCVRTYRPEIKKGSYNNIVVHVKTA-VADNLLFYLGSA--KFIDFLAIEMRKGKVSFLWDVGSGVGRVEYPDLT   88 (608)
T ss_dssp             BCC----CEEEECCCCSCTTEEEEEEEEEES-CSCEEEEEEECS--SCSCEEEEEEETTEEEEEEESSSCEEEEECCSCC
T ss_pred             EEEcCCCeEEEecCCCCCcccceEEEEEecC-CCceEEEEeCCC--CCCcEEEEEEECCEEEEEEECCCCceEEeeCCcc
Confidence            5789999999998642 22678899999999 699999999865  24799999999999999999999863 3332 23


Q ss_pred             CCccccc-ceeccCCCeEEEEecCCCCCCc-------eeee--ee--cCC--CceeccccccccccccccccccCCCceE
Q psy9228         296 PAFNPVS-TKEAPYGSKITLTCNNDLEAPV-------EYTW--SK--RSN--GHVLPFGAFSRENTLTLQEIKNSDAGMY  361 (834)
Q Consensus       296 ~~~~~~~-~~~~~~~~~v~l~vd~~~~~~~-------~~~~--~~--~~~--~~~~~~gg~~~~~~~~~~~~~~~~~~~~  361 (834)
                      .....|| +...|.++.+.|+||.......       ....  ..  ...  ...+++||+|....... .  ....++.
T Consensus        89 ~~dg~WH~V~v~r~~~~~~l~Vd~~~~~~~~~~~~~~~~~~~g~~~~L~l~~~~~l~vGG~p~~~~~~~-~--~~~~~F~  165 (608)
T 2wjs_A           89 IDDSYWYRIEASRTGRNGSISVRALDGPKASMVPSTYHSVSPPGYTILDVDANAMLFVGGLTGKIKKAD-A--VRVITFT  165 (608)
T ss_dssp             CTTSCCEEEEEEEETTEEEEEEEESSSTTTTSCCCCEEEECCSSCCSCCCCSSCEEEESSCCTTSCCCT-T--CCCCCCC
T ss_pred             ccCCceEEEEEEEeCCEEEEEEecccCccccccccccccccCCcceeeccCCCCcEEeCCcCccccCCc-c--cccCCcc
Confidence            4444565 4566888999999987543211       1110  00  011  24588999886322110 0  0124677


Q ss_pred             EEEeCCC--Cce-------------eEeeEEeeeecc-ccccCCCcccccccCCcc-ccceeEEEEEEEeeCCCCeeEEE
Q psy9228         362 VCKVSNK--DMT-------------VEIPSILLVTDS-VPLFTQKPLSYLALPTLT-DAHLHFSIELSFKPTDYNGLIMY  424 (834)
Q Consensus       362 ~C~~~~~--~~~-------------~~~~~~~~~~~~-~~~f~~~~~s~l~~~~~~-~~~~~~~i~~~frt~~~~GlLl~  424 (834)
                      +|+....  +..             ..|......... .+..|. ..+|+.++... .....++|+|+|||.+++|+|||
T Consensus       166 GCi~~l~in~~~i~l~~~~~~~g~~~gC~~~p~~~~~~~~~~F~-g~sy~~~~~~~~~~~~~~~isl~FrT~~~~GlLl~  244 (608)
T 2wjs_A          166 GCMGETYFDNKPIGLWNFREKEGDCKGCTVSPQVEDSEGTIQFD-GEGYALVSRPIRWYPNISTVMFKFRTFSSSALLMY  244 (608)
T ss_dssp             EEECCCEESSSBC----CCEEESCCCCC--------CCCCEEEE-EEEEEEEECCTTCBTTEEEEEEEEEESCSEEEEEE
T ss_pred             EEEEEEEECCEEccccccccccCCCCCCCCCcccccCCcceEEC-CCcceEEeccccCCCcceEEEEEEEeCCCCeEEEE
Confidence            8876531  100             112211000011 123332 35788776432 23457899999999999999999


Q ss_pred             eccCCccccCCCCCeEEEEEECcEEEEEEeccc--EEEEeeeeecCCCeEEEEEEEECCeEEEEECCe-----eeeeeec
Q psy9228         425 TGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVGL--VVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGE-----PLIVGST  497 (834)
Q Consensus       425 ~~~~~~~~~~~~~d~~~l~L~~G~l~~~~~~G~--~~i~s~~~~~dg~wH~V~v~~~~~~~~l~VD~~-----~~~~~~~  497 (834)
                      .+..      ...||++|+|.+|++++++++|.  ..+.+...++||+||+|.+.|..+.++|.||+.     .......
T Consensus       245 ~~~~------~~~d~l~L~L~~G~l~~~~~~g~~~~~l~s~~~~nDg~WH~V~v~r~~~~~~L~VD~~~~~~~~~~~~~~  318 (608)
T 2wjs_A          245 LATR------DLKDFMSVELSDGHVKVSYDLGSGMTSVVSNQNHNDGKWKAFTLSRIQKQANISIVDIDSNQEENVATSS  318 (608)
T ss_dssp             EECT------TSSSEEEEEEETTEEEEEEECSSCEEEEEEEEECCSSSCEEEEEEEETTEEEEEEEETTTCCEEEEEEEC
T ss_pred             ecCC------CCCceEEEEEECCEEEEEEECCCCcEEEEcCccccCCceEEEEEEEecceEEEEEecccccccccccccc
Confidence            9652      35899999999999999999984  667788899999999999999999999999973     2334445


Q ss_pred             CCCcccccc--CCCceeeccccCCCcccCcCcccccCceeEEeeeEEcCeeeeecccccccCCcccCCCCCCCCCCCCCC
Q psy9228         498 PGEKLQVLN--LRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANIMDCSDLESSPVCAPKP  575 (834)
Q Consensus       498 ~g~~~~~l~--~~~~l~iGG~~~~~~~~~~~~~~~~gF~GCi~~v~ing~~~~~~~~~~~~~~~~~C~~~~~~~~C~~~p  575 (834)
                      ++. ...|+  ....+||||+|.... . .......+|.|||++|.+|++.+++..... ..++.               
T Consensus       319 ~g~-~~~l~~~~~~~lylGG~p~~~~-~-~~~~~~~~F~GCi~~v~in~~~~~l~~~~~-~~~v~---------------  379 (608)
T 2wjs_A          319 SGN-NFGLDLKADDKIYFGGLPTLRN-L-RPEVNVKKYSGCLKDIEISRTPYNILSSPD-YVGVT---------------  379 (608)
T ss_dssp             CSS-CCCCCCCTTCEEEESCCCCCSC-C-CTTCCCCCCEEEEEEEEETTEEECGGGCSS-CEEEE---------------
T ss_pred             CCc-cccccccCCCceEEeccCcccc-c-CcccccCCceEEeeeEEECCEecCcccccc-ccccc---------------
Confidence            555 45566  467899999998532 1 112345789999999999999988765310 11110               


Q ss_pred             CCCCCeecccCCCCCceeeecCCCCCCCCCccCccCCCCCCccCCCceeeecCCCcEEcCCCCCCCCCcccccccceeeE
Q psy9228         576 CQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDSYECLCSLGYAPPNCAKRVSIGSEVH  655 (834)
Q Consensus       576 C~ngg~C~~~~~~~~~~~C~C~~G~~G~~Ce~~~~~C~~~~pC~ngg~C~~~~~~~~C~C~~g~~G~~Ce~~~~~~~~~~  655 (834)
                                                        ..|... +                                 ..++.
T Consensus       380 ----------------------------------~gC~~~-~---------------------------------~~~~~  391 (608)
T 2wjs_A          380 ----------------------------------KGCSLE-N---------------------------------VYTVS  391 (608)
T ss_dssp             ----------------------------------ESCCCC-C---------------------------------TTEEE
T ss_pred             ----------------------------------cCCCcc-c---------------------------------ccccc
Confidence                                              011110 0                                 12578


Q ss_pred             EcCCceeeechhhhhhccCcceEEEEEEeCCCCeeEEecCCCCCCCCCCcceEEEEEECCEEEEEEEcCCcE---EEEEe
Q psy9228         656 FLGEGYVELKKELIEERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGV---VTIKF  732 (834)
Q Consensus       656 F~g~s~~~~~~~~~~~~~~~~~i~~~frT~~~~GlLl~~~~~~~~~~~~~~~~~l~l~~G~l~~~~~~g~~~---~~l~~  732 (834)
                      |.+.||++++...+   .....|+|+|||++++|+|||++..      ..+|++|+|.||+|++++++|++.   .++..
T Consensus       392 F~~~g~~~~~~~~~---~~~~~i~~~FRT~~~~GlLl~~~~~------~~~~l~l~L~~G~l~~~~~~g~~~~~~~~l~~  462 (608)
T 2wjs_A          392 FPKPGFVELAAVSI---DVGTEINLSFSTRNESGIILLGSGG------GQAYYAIFLNKGRLEVHLSSGTRTMRKIVIKP  462 (608)
T ss_dssp             CSSSCEEEECCCCB---CTTEEEEEEEEESCSSEEEEEEC---------CCEEEEEEETTEEEEEEEC----CEEEEECC
T ss_pred             cCCCCeEEecCccC---CCCcEEEEEEEeCCCCeEEEEEcCC------CCceEEEEEECCEEEEEEECCCCceeEEEEeC
Confidence            99999999875432   3568999999999999999998753      368999999999999999998764   23442


Q ss_pred             CCceecCCCcEEEEEEEECCEEEEEEcCeeeecccCCCCccceecCCceEEcCcCCCCCCCCCccCCCceEEEEEEEECC
Q psy9228         733 SKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNIHIQN  812 (834)
Q Consensus       733 s~~~~nDg~wH~V~i~r~~~~~~l~VD~~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~~~~~~~~~~~F~GCi~~v~in~  812 (834)
                      +..++|||+||+|+|.|.++.++|+||+........ .....++. +.+||||+|............+|+|||++|+||+
T Consensus       463 ~~~~l~DG~WH~V~v~~~~~~~~L~VD~~~~~~~~~-~~~~~l~~-~~lylGG~p~~~~~~~~~~~~~F~GCi~~v~in~  540 (608)
T 2wjs_A          463 EPNRFHDGREHSVHVERTRGIFTVQIDEDRRHMQNL-TEEQPIEV-KKLFVGGAPPEFQPSPLRNIPAFQGCVWNLVINS  540 (608)
T ss_dssp             CSSCSSSSSCEEEEEEECSSEEEEEESSSCCEEEEC-CCCSCBCC-SCEEESCCCC--------CCCCCCEEEEEEEETT
T ss_pred             CCcccCCCCeEEEEEEEeCCEEEEEECCcccccccC-Cccccccc-CceEEeCCCccccccccccCCCCcEEEEEEEECC
Confidence            467899999999999999999999999987643322 22233433 6899999997643222345678999999999999


Q ss_pred             ceecccCCCC-CCCccccccc
Q psy9228         813 KHISNIGSSA-SSGLHVMPWI  832 (834)
Q Consensus       813 ~~~~~l~~~a-~~~~nv~~c~  832 (834)
                      + .++|...+ ..++++..|.
T Consensus       541 ~-~ldl~~~~~~~~v~~~~C~  560 (608)
T 2wjs_A          541 I-PMDFAQPIAFKNADIGRCT  560 (608)
T ss_dssp             E-ECCCSSCSEEESCCTTSCC
T ss_pred             E-EccchhhhhccceeccccC
Confidence            7 56776643 5666667664

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}

Probab=100.00  E-value=1.5e-50  Score=448.97  Aligned_cols=366  Identities=26%  Similarity=0.461  Sum_probs=276.0

Q ss_pred             ccccCCCcccccccCCccccceeEEEEEEEeeCCCCeeEEEeccCCccccCCCCCeEEEEEECcEEEEEEeccc--EEEE
Q psy9228         384 VPLFTQKPLSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVGL--VVLR  461 (834)
Q Consensus       384 ~~~f~~~~~s~l~~~~~~~~~~~~~i~~~frt~~~~GlLl~~~~~~~~~~~~~~d~~~l~L~~G~l~~~~~~G~--~~i~  461 (834)
                      .|..|.++.||+++|.+.. ...++|+|+|||.+++|+|||.++       ...||++|+|.+|++++++++|.  ..++
T Consensus         6 ~~v~F~~~~Syl~~p~~~~-~~~~~is~~frT~~~~GlLly~~~-------~~~dfi~l~L~~G~l~~~~~~G~g~~~~~   77 (410)
T 3asi_A            6 DPVTFKTKSSYVALATLQA-YTSMHLFFQFKTTSLDGLILYNSG-------DGNDFIVVELVKGYLHYVFDLGNGANLIK   77 (410)
T ss_dssp             CCEEECSTTCEEEESCCCC-SSCEEEEEEEECSCSCEEEEEEEB-------STTCEEEEEEETTEEEEEEESSSCEEEEE
T ss_pred             cccEeCCCCeeEEeCCCCC-CceEEEEEEEEeCCCCeEEEEeCC-------CCCCEEEEEEECCEEEEEEECCCCcEEEE
Confidence            4556666789999998864 347999999999999999999864       24799999999999999999983  4444


Q ss_pred             --eeeeecCCCeEEEEEEEECCe-EEEEECCeeeeeeecCCCccccccCCCceeeccccCCCc-ccCcCcccccCceeEE
Q psy9228         462 --SKVTLVPHEWVVVTIIKDFKE-GKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHV-TPSLSVEVTEGFHGCI  537 (834)
Q Consensus       462 --s~~~~~dg~wH~V~v~~~~~~-~~l~VD~~~~~~~~~~g~~~~~l~~~~~l~iGG~~~~~~-~~~~~~~~~~gF~GCi  537 (834)
                        +..+++||+||+|.+.|..+. +.|.||+...... .++  ...|++..++||||+|.... ..+.......+|.|||
T Consensus        78 ~~s~~~vnDg~WH~V~v~r~~~~~~~l~VD~~~~~~~-~~~--~~~l~~~~~lyvGG~p~~~~~~~~~~~~~~~~F~GCi  154 (410)
T 3asi_A           78 GSSNKPLNDNQWHNVMISRDTSNLHTVKIDTKITTQI-TAG--ARNLDLKSDLYIGGVAKETYKSLPKLVHAKEGFQGCL  154 (410)
T ss_dssp             CCCSSCSCSSSCEEEEEEECTTCEEEEEETTEEEEEE-CTT--CCCCCBCSCEEESCCCGGGGGGSCTTCCCSSBCCEEE
T ss_pred             eccCcEeCCCCeEEEEEEEcCCceEEEEECCEeceec-cCC--ccceecCCceEECccccchhhhhhhhcccccCchhhe
Confidence              678999999999999999875 7999999865443 333  35678888999999997421 1222334567899999


Q ss_pred             eeeEEcCeeeeecccccc-cCCc-ccCCCCCCCCCCCCCCCCCCCeecccCCCCCceeeecCCCCCCCCCccCccCCCCC
Q psy9228         538 STIDVLGSELDLINSAVD-SANI-MDCSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKG  615 (834)
Q Consensus       538 ~~v~ing~~~~~~~~~~~-~~~~-~~C~~~~~~~~C~~~pC~ngg~C~~~~~~~~~~~C~C~~G~~G~~Ce~~~~~C~~~  615 (834)
                      +++.+|++.+++...... ..++ .+|.                                           ...++|.+.
T Consensus       155 ~~l~ing~~~dl~~~~~~~~~~v~~gC~-------------------------------------------~~~~~C~~~  191 (410)
T 3asi_A          155 ASVDLNGRLPDLISDALFCNGQIERGCE-------------------------------------------GPSTTCQED  191 (410)
T ss_dssp             EEEESSSCCCCTTTTCSEEESSEEESCC-------------------------------------------CCSSCCCTT
T ss_pred             eheeeCCcccCchhhhhccCCccCCCCC-------------------------------------------CCCCCcccc
Confidence            999999998887653221 1112 2332                                           122455555


Q ss_pred             CccCCCceeeecCCCcEEcCCC-CCCCCCcccccccceeeEEc-CCceeeechhhhh-hccCcceEEEEEEeCCCCeeEE
Q psy9228         616 DVCKNGGMCKVTPDSYECLCSL-GYAPPNCAKRVSIGSEVHFL-GEGYVELKKELIE-ERRNEETIAFDFVTDDKNALLL  692 (834)
Q Consensus       616 ~pC~ngg~C~~~~~~~~C~C~~-g~~G~~Ce~~~~~~~~~~F~-g~s~~~~~~~~~~-~~~~~~~i~~~frT~~~~GlLl  692 (834)
                       ||+|+|+|++.+++|.|.|+. +|+|+.|+.+..   .+.|. +++|++|...... .......|+|+|||.+++|+||
T Consensus       192 -pC~n~g~C~~~~~~~~C~C~~~~~~G~~C~~~~~---~~~f~~~~~~~~~~~~~~~~~~~~~~~i~l~frT~~~~GlLl  267 (410)
T 3asi_A          192 -SCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGT---TYIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLV  267 (410)
T ss_dssp             -SSSTTCEEEECSSSEEEECTTTSEESTTSCEECC---EEEEEEEEEEEEEECCTTCCCCBSEEEEEEEEECCCSEEEEE
T ss_pred             -cCCCCCEecCCCCCceEeccCCcccCCCCCCCcc---cccccCCCceEEEecCCCCCccceeeEEEEEEEeCCCCEEEE
Confidence             777777777777777777775 777777776542   45674 6789887532211 1123468999999999999999


Q ss_pred             ecCCCCCCCCCCcceEEEEEECCEEEEEEEcCCcEEEEEeCCceecCCCcEEEEEEEECCEEEEEEcCeeeecccCCCC-
Q psy9228         693 WNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGS-  771 (834)
Q Consensus       693 ~~~~~~~~~~~~~~~~~l~l~~G~l~~~~~~g~~~~~l~~s~~~~nDg~wH~V~i~r~~~~~~l~VD~~~~~~~~~~~~-  771 (834)
                      |+....    ...+|++|+|.+|+|++++++|++...+..+..+++||+||+|.+.|.++.++|+||+..+.....++. 
T Consensus       268 ~~~~~~----~~~~~l~l~L~~G~l~~~~~~g~~~~~~~~~~~~l~DG~wH~V~v~r~~~~~~L~VD~~~~~~~~~~g~~  343 (410)
T 3asi_A          268 RVDSSS----GLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQ  343 (410)
T ss_dssp             EEEECT----TCCCEEEEEEETTEEEEEEESSSSCEEEECCSCCCCSSSCEEEEEEEETTEEEEEETTSCCEEECCSSCC
T ss_pred             EEecCC----CCCceEEEEEeCCEEEEEEECCCCceEEecCccCcCCCCeEEEEEEEECCEEEEEECCcceecccCCCcc
Confidence            986432    125899999999999999999988777764458899999999999999999999999987665544432 


Q ss_pred             ccceecCCceEEcCcCCCCCCCCCccCCCceEEEEEEEECCceecccCC
Q psy9228         772 QDVINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNIHIQNKHISNIGS  820 (834)
Q Consensus       772 ~~~l~~~~~lyiGG~p~~~~~~~~~~~~~F~GCi~~v~in~~~~~~l~~  820 (834)
                      ...++...+|||||+|..         .+|+|||++|++|+..++++..
T Consensus       344 ~~~~~~~~~lylGG~p~~---------~~F~GCi~~v~ing~~~l~~a~  383 (410)
T 3asi_A          344 LTIFNSQATIIIGGKEQG---------QPFQGQLSGLYYNGLKVLNMAA  383 (410)
T ss_dssp             CCCBCCEEEEEESSTTTT---------CCCCEEEEEEEETTBCHHHHHH
T ss_pred             ceeeeccceEEECCcccC---------CCCEEEEEEEEECCHHHHHHHh
Confidence            234566678999999863         6899999999999988777653

>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus}

Probab=100.00  E-value=2.1e-45  Score=404.73  Aligned_cols=344  Identities=23%  Similarity=0.314  Sum_probs=260.6

Q ss_pred             cccCCCcccccccCCcc-ccceeEEEEEEEeeCCCCeeEEEeccCCccccCCCCCeEEEEEECcEEEEEEecc--cEEEE
Q psy9228         385 PLFTQKPLSYLALPTLT-DAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVG--LVVLR  461 (834)
Q Consensus       385 ~~f~~~~~s~l~~~~~~-~~~~~~~i~~~frt~~~~GlLl~~~~~~~~~~~~~~d~~~l~L~~G~l~~~~~~G--~~~i~  461 (834)
                      ..|+.++.||+.++... .....++|+|+|||.+++|+|||.++.      ...||++|+|.+|++++++++|  ...+.
T Consensus        22 ~~Fg~~~~S~~~~~~~~~~~~~~~~is~~frT~~~~GlLly~~~~------~~~d~~~l~L~~G~l~~~~~~g~~~~~~~   95 (383)
T 2jd4_A           22 HQFGLSQNSHLVLPLQQSDVRKRLQVQLSIRTFASSGLIYYVAHQ------NQMDYATLQLQEGRLHFMFDLGKGRTKVS   95 (383)
T ss_dssp             EECCSSTTCEEEEECCSCCCSSEEEEEEEEEECCSCEEEEEEECT------TSSSEEEEEEETTEEEEEEECSSCEEEEE
T ss_pred             cccCCCCCeeEEEeCCchhcccceEEEEEEEcCCCCeEEEEeCCC------CCCcEEEEEEECCEEEEEEECCCCeEEEe
Confidence            34666779999887532 335679999999999999999999752      3579999999999999999987  46677


Q ss_pred             eeeeecCCCeEEEEEEEECCeEEEEECCeeeeeeecCCCccccccCCCceeeccccCCCcccCcCcccccCceeEEeeeE
Q psy9228         462 SKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTID  541 (834)
Q Consensus       462 s~~~~~dg~wH~V~v~~~~~~~~l~VD~~~~~~~~~~g~~~~~l~~~~~l~iGG~~~~~~~~~~~~~~~~gF~GCi~~v~  541 (834)
                      +...++||+||+|.+.|..+.++|.||+........++. ...|++..++||||+|.... .........+|.|||+++.
T Consensus        96 ~~~~~~Dg~WH~V~v~r~~~~~~L~VD~~~~~~~~~~g~-~~~l~~~~~l~vGG~p~~~~-~~~~~~~~~~F~GCi~~l~  173 (383)
T 2jd4_A           96 HPALLSDGKWHTVKTEYIKRKAFMTVDGQESPSVTVVGK-ATTLDVERKLYLGGLPSHYR-ARNIGTITHSIPACIGEIM  173 (383)
T ss_dssp             CCCCCTTSSCEEEEEEEETTEEEEEETTEECCCEECCSS-CCCCCCCSEEEESSCCTTCC-CCSSCSCCSBCCEEEEEEE
T ss_pred             CcceecCCCcEEEEEEEeCCEEEEEEcCccccceecCCC-cceecCCCCeEEeccCcccc-cccccccCCCceEEeEEEE
Confidence            888999999999999999999999999998877666666 67788889999999997421 1112234578999999999


Q ss_pred             EcCeeeeecccccccCCcccCCCCCCCCCCCCCCCCCCCeecccCCCCCceeeecCCCCCCCCCccCccCCCCCCccCCC
Q psy9228         542 VLGSELDLINSAVDSANIMDCSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNG  621 (834)
Q Consensus       542 ing~~~~~~~~~~~~~~~~~C~~~~~~~~C~~~pC~ngg~C~~~~~~~~~~~C~C~~G~~G~~Ce~~~~~C~~~~pC~ng  621 (834)
                      +|++.+++....                                                               .|.|.
T Consensus       174 in~~~l~l~~~~---------------------------------------------------------------~~~~~  190 (383)
T 2jd4_A          174 VNGQQLDKDRPL---------------------------------------------------------------SASAV  190 (383)
T ss_dssp             ETTEECCTTSCS---------------------------------------------------------------EEESC
T ss_pred             ECCEEeccCCcc---------------------------------------------------------------ccCcc
Confidence            999987765321                                                               11122


Q ss_pred             ceeeecCCCcEEcCCCCCCCCCcccccccceeeEEcCCceeeechhhhhhccCcceEEEEEEeCCCCeeEEecCCCCCCC
Q psy9228         622 GMCKVTPDSYECLCSLGYAPPNCAKRVSIGSEVHFLGEGYVELKKELIEERRNEETIAFDFVTDDKNALLLWNGQPSYKN  701 (834)
Q Consensus       622 g~C~~~~~~~~C~C~~g~~G~~Ce~~~~~~~~~~F~g~s~~~~~~~~~~~~~~~~~i~~~frT~~~~GlLl~~~~~~~~~  701 (834)
                      +.|...                    .  ..+..|.|+||+.|...... ......|+|+|||++++|+|||.+..    
T Consensus       191 ~~C~~~--------------------~--~~g~~F~g~sy~~~~~~~~~-~~~~~~isl~frT~~~~GlLl~~~~~----  243 (383)
T 2jd4_A          191 DRCYVV--------------------A--QEGTFFEGSGYAALVKEGYK-VRLDLQITLEFRTTSKNGVLLGISSA----  243 (383)
T ss_dssp             BCCBSS--------------------E--ESSEEEEEEEEEEEEEEEEC-CBSCEEEEEEEEESCSCEEEEEEECS----
T ss_pred             ccccCc--------------------C--ccCceECCCeEEEEecCccc-cCCceEEEEEEEeCCCCEEEEEecCC----
Confidence            222110                    0  12467999999998422221 23567999999999999999998653    


Q ss_pred             CCCcceEEEEEECCEEEEEEEcCCcEEEEEeC---CceecCCCcEEEEEEEECCEEEEEEcCeeeecccCCCCccceecC
Q psy9228         702 GIGREFIAVAVVNGYLEYSYDLGDGVVTIKFS---KKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTR  778 (834)
Q Consensus       702 ~~~~~~~~l~l~~G~l~~~~~~g~~~~~l~~s---~~~~nDg~wH~V~i~r~~~~~~l~VD~~~~~~~~~~~~~~~l~~~  778 (834)
                        ..||++|+|++|+|++++++|++...+...   ..+||||+||+|.+.|.++.++|+||+........++....++..
T Consensus       244 --~~d~l~l~L~~G~l~~~~~~g~g~~~~~~~~~~~~~l~DG~WH~V~l~~~~~~~~L~VD~~~~~~~~~~~~~~~l~~~  321 (383)
T 2jd4_A          244 --KVDAIGLEIVDGKVLFHVNNGAGRITATYQPRAARALCDGKWHTLQAHKSKHRIVLTVDGNSVRAESPHTHSTSADTN  321 (383)
T ss_dssp             --SSCEEEEEEETTEEEEEEESSSCEEEEEECCSSTTGGGSSSCEEEEEEEETTEEEEEETTEEEEEC----CCCCBCCC
T ss_pred             --CCcEEEEEEECCEEEEEEECCCCcEEEEEecCCCccccCCCcEEEEEEEcCCEEEEEECCeecccccCCCCcccccCC
Confidence              269999999999999999999887766532   467999999999999999999999999887654433334467777


Q ss_pred             CceEEcCcCCCCCCCCCccCCCceEEEEEEEECCce---ecccCCCCCCCcccc
Q psy9228         779 GNIYLGGTPNMDLMTGGRYVHPMSGLMMNIHIQNKH---ISNIGSSASSGLHVM  829 (834)
Q Consensus       779 ~~lyiGG~p~~~~~~~~~~~~~F~GCi~~v~in~~~---~~~l~~~a~~~~nv~  829 (834)
                      .+|||||+|............+|+|||++|+||+..   .+|+..+ ....+|.
T Consensus       322 ~~lylGG~p~~~~~~~~~~~~~F~GCi~~v~in~~~~~~~~dl~~~-~~~~gv~  374 (383)
T 2jd4_A          322 DPIYVGGYPAHIKQNSLSSRASFRGCVRNLRLSRGSQVQSLDLSRA-FDLQGVF  374 (383)
T ss_dssp             EEEEESCCCTTSCCTTCSCCCBCEEEEEEEEEC---CCEECCGGGC-SEEEEEE
T ss_pred             CCEEEeccccccccCCccccCCCceEccEEEECCCCcccccChhhH-HhhcCcc
Confidence            899999999764333334577899999999999964   5677653 3344443

>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A

Probab=100.00  E-value=1.1e-43  Score=391.69  Aligned_cols=345  Identities=21%  Similarity=0.311  Sum_probs=259.6

Q ss_pred             cccCCCcccccccCCc-cccceeEEEEEEEeeCCCCeeEEEeccCCccccCCCCCeEEEEEECcEEEEEEecc--cEEEE
Q psy9228         385 PLFTQKPLSYLALPTL-TDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVG--LVVLR  461 (834)
Q Consensus       385 ~~f~~~~~s~l~~~~~-~~~~~~~~i~~~frt~~~~GlLl~~~~~~~~~~~~~~d~~~l~L~~G~l~~~~~~G--~~~i~  461 (834)
                      ..|+..+.||+.++-. ......++|+|+|||.+++|+|||.++.      ...||++|+|.+|++++++++|  ...+.
T Consensus        36 ~~Fg~~~~s~~~~~~~~~~~~~~~~is~~frT~~~~GlLly~~~~------~~~dfi~l~L~~G~l~~~~~~g~g~~~~~  109 (394)
T 1dyk_A           36 KQFGLSRNSHIAIAFDDTKVKNRLTIELEVRTEAESGLLFYMARI------NHADFATVQLRNGFPYFSYDLGSGDTSTM  109 (394)
T ss_dssp             EECCSSTTCEEEEECCGGGGSSEEEEEEEEEECCSCEEEEEEECT------TSSSEEEEEEETTEEEEEEESSSCEEEEE
T ss_pred             eecCCCCCcEEEEEcCccccccceEEEEEEEeCCCCeEEEEcCCC------CCCceEEEEEECCEEEEEEECCCCceEEE
Confidence            3466667788766532 2234579999999999999999999752      3589999999999999999997  46677


Q ss_pred             eeeeecCCCeEEEEEEEECCeEEEEECCeeeeeeecCCCccccccCCCceeeccccCCCcccCcCcccccCceeEEeeeE
Q psy9228         462 SKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTID  541 (834)
Q Consensus       462 s~~~~~dg~wH~V~v~~~~~~~~l~VD~~~~~~~~~~g~~~~~l~~~~~l~iGG~~~~~~~~~~~~~~~~gF~GCi~~v~  541 (834)
                      +...++||+||+|.+.|..+.++|.||+....... ++. ...|++..++||||+|..... ........+|.|||+++.
T Consensus       110 ~~~~~~Dg~WH~V~v~r~~~~~~L~VD~~~~~~~~-~g~-~~~l~~~~~l~vGG~p~~~~~-~~~~~~~~~F~GCi~~l~  186 (394)
T 1dyk_A          110 IPTKINDGQWHKIKIVRVKQEGILYVDDASSQTIS-PKK-ADILDVVGILYVGGLPINYTT-RRIGPVTYSLDGCVRNLH  186 (394)
T ss_dssp             CCSCCCSSSCEEEEEEEETTEEEEEETTEEEEEEC-STT-CCCCCCCSEEEESSCCTTCCC-CSSCSCCSBCSEEEEEEE
T ss_pred             cccccCCCCEEEEEEEEeCCEEEEEEcCcccceec-CCC-CceecCCCCEEEcccCCcccc-cccccCCCCccEeeeEEE
Confidence            88899999999999999999999999998876655 665 677888899999999974321 111234578999999999


Q ss_pred             EcCeeeeecccccccCCcccCCCCCCCCCCCCCCCCCCCeecccCCCCCceeeecCCCCCCCCCccCccCCCCCCccCCC
Q psy9228         542 VLGSELDLINSAVDSANIMDCSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNG  621 (834)
Q Consensus       542 ing~~~~~~~~~~~~~~~~~C~~~~~~~~C~~~pC~ngg~C~~~~~~~~~~~C~C~~G~~G~~Ce~~~~~C~~~~pC~ng  621 (834)
                      +|++.+++..... ..++.                                                  .|... +    
T Consensus       187 in~~~~~l~~~~~-~~~~~--------------------------------------------------~C~~~-~----  210 (394)
T 1dyk_A          187 MEQAPVDLDQPTS-SFHVG--------------------------------------------------TCFAN-A----  210 (394)
T ss_dssp             ESSSCCCTTSCSE-EESCB--------------------------------------------------CCBSS-E----
T ss_pred             ECCEEecCCCccc-cCcCC--------------------------------------------------CCCCC-C----
Confidence            9999887764210 00000                                                  11111 1    


Q ss_pred             ceeeecCCCcEEcCCCCCCCCCcccccccceeeEEcCCceeeechhhhhhccCcceEEEEEEeCCCCeeEEecCCCCCCC
Q psy9228         622 GMCKVTPDSYECLCSLGYAPPNCAKRVSIGSEVHFLGEGYVELKKELIEERRNEETIAFDFVTDDKNALLLWNGQPSYKN  701 (834)
Q Consensus       622 g~C~~~~~~~~C~C~~g~~G~~Ce~~~~~~~~~~F~g~s~~~~~~~~~~~~~~~~~i~~~frT~~~~GlLl~~~~~~~~~  701 (834)
                                                   ..+..|.++||+.+....  .......|+|+|||++++|+|||....    
T Consensus       211 -----------------------------~~g~~F~g~gy~~~~~~~--~~~~~~~is~~frT~~~~GlLl~~~~~----  255 (394)
T 1dyk_A          211 -----------------------------ESGTYFDGTGFAKAVGGF--KVGLDLLVEFEFRTTRPTGVLLGVSSQ----  255 (394)
T ss_dssp             -----------------------------EESEEEEEEEEEECCSSB--CCBSEEEEEEEEEESCSCEEEEEEECS----
T ss_pred             -----------------------------ccCceeCCCceeEEcCCc--ccCCceEEEEEEEeCCCCEEEEEecCC----
Confidence                                         124578889998874221  123568999999999999999998532    


Q ss_pred             CCCcceEEEEEECCEEEEEEEcCCcEEEEEe---CCceecCCCcEEEEEEEECCEEEEEEcCeeeecccCCCCccceecC
Q psy9228         702 GIGREFIAVAVVNGYLEYSYDLGDGVVTIKF---SKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTR  778 (834)
Q Consensus       702 ~~~~~~~~l~l~~G~l~~~~~~g~~~~~l~~---s~~~~nDg~wH~V~i~r~~~~~~l~VD~~~~~~~~~~~~~~~l~~~  778 (834)
                        ..+|++|+|+||+|++++++|++...+..   +..+++||+||+|+|.|.++.++|+||+..............++..
T Consensus       256 --~~~~l~l~L~~G~l~~~~~~g~~~~~~~~~~~~~~~l~DG~WH~V~v~~~~~~~~L~VD~~~~~~~~~~~~~~~l~~~  333 (394)
T 1dyk_A          256 --KMDGMGIEMIDEKLMFHVDNGAGRFTAIYDAEIPGHMCNGQWHKVTAKKIKNRLELVVDGNQVDAQSPNSASTSADTN  333 (394)
T ss_dssp             --SSCEEEEEEETTEEEEEEESSSCCEEEEECCCSTTSTTSSSCEEEEEEEETTEEEEEETTEEEEEECCCTTCCCBCCC
T ss_pred             --CCCEEEEEEECCEEEEEEECCCCcEEEEEecCCCccccCCceEEEEEEEeCCEEEEEECCcccccccCCCcceecccC
Confidence              26899999999999999999987765553   2678999999999999999999999999887655443444557777


Q ss_pred             CceEEcCcCCCCCCCCCccCCCceEEEEEEEECCc----eecccCCC-CCCCcccccc
Q psy9228         779 GNIYLGGTPNMDLMTGGRYVHPMSGLMMNIHIQNK----HISNIGSS-ASSGLHVMPW  831 (834)
Q Consensus       779 ~~lyiGG~p~~~~~~~~~~~~~F~GCi~~v~in~~----~~~~l~~~-a~~~~nv~~c  831 (834)
                      .+|||||+|............+|+|||++|+||+.    ..+++... ...++....|
T Consensus       334 ~~lylGG~p~~~~~~~~~~~~~F~GCi~~v~in~~~~~~~~~d~~~a~~~~gV~~~~C  391 (394)
T 1dyk_A          334 DPVFVGGFPGGLNQFGLTTNIRFRGCIRSLKLTKGTGKPLEVNFAKALELRGVQPVSC  391 (394)
T ss_dssp             BCCEESCCCTTCCCTTCSCCCCCEEEEEEEEEECTTSCCEECCGGGCSEEEEEESSEE
T ss_pred             CCEEEcCCCccccccccccCCCCceeeeEEEECCccCcccccchhHhhhccCcccCCC
Confidence            88999999986433333457899999999999882    35666542 2445444545

>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein, vitamin K-dependent protein, AXL/SKY/MER ligand, laminin G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4 b.29.1.4 PDB: 2c5d_A*

Probab=100.00  E-value=4.5e-42  Score=381.85  Aligned_cols=381  Identities=16%  Similarity=0.211  Sum_probs=250.2

Q ss_pred             EeeCCCCCCCCCCCCCCCCccCCCCCC-CeeecCCCCeEEeCCCCcccCcccccccccccCCCCcceEEcCCCCC-cceE
Q psy9228         162 TCICPPGFSGDRCSVLGEPCYPGACGD-GSCQDVDGAMKCLCPIGTAGKRCEQKIKILQPAFKHGSYLAYPTPKT-MRKF  239 (834)
Q Consensus       162 ~C~C~~g~~G~~Ce~~~~~C~~~~C~~-g~C~~~~~~~~C~C~~g~~G~~Ce~~~~~~~~~F~g~~y~~~~~~~~-~~~~  239 (834)
                      .|.| +|++|..|+     |..++|.+ ++|+.....   .|...         . ....+|.|.+|+.++.+.. ....
T Consensus         3 ~C~C-~~~~g~~~~-----~~~~~C~~~~~C~p~~~~---~~~~~---------~-~~~~~F~g~~~~~~~f~~~~~~~~   63 (422)
T 1h30_A            3 LAHC-DGRGGLKLS-----QDMDTCEDILPCVPFSVA---KSVKS---------L-YLGRMFSGTPVIRLRFKRLQPTRL   63 (422)
T ss_dssp             --CC-CGGGTEEEE-----TTTTEEEECCCSSCBCCC---EETTE---------E-ECCC-----CCEEEECCBSSCCCC
T ss_pred             eeEc-CCCCccccc-----cccCcCCCCCccCCcccc---cCccc---------c-eeeeEECCCceEEEEccCCCCCce
Confidence            6999 799998884     55566664 467654421   12211         0 1346899999988866433 4678


Q ss_pred             EEEEEEcccCCCceEEEeecccCCCCCCeEEEEEecCeEEEEEecCCCcceecCCCCCcccccceeccCCCeEEEEecCC
Q psy9228         240 KVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKHMEFRFDTGSATPLYSNDAPAFNPVSTKEAPYGSKITLTCNND  319 (834)
Q Consensus       240 ~i~l~f~t~~~~~glll~~~~~~~~~~d~~~l~l~~G~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~vd~~  319 (834)
                      .|+|.|||. .++|+|||.+..  ...||++|+|.+|+++++++.|++.                               
T Consensus        64 ~is~~FrT~-~~~GlLly~~~~--~~~df~~l~L~~G~l~~~~~~g~~~-------------------------------  109 (422)
T 1h30_A           64 VAEFDFRTF-DPEGILLFAGGH--QDSTWIVLALRAGRLELQLRYNGVG-------------------------------  109 (422)
T ss_dssp             EEEEEEEEC-CSSEEEEEEESC--TTSEEEEEEEETTEEEEEEEETTEE-------------------------------
T ss_pred             EEEEEEEeC-CCCeEEEEECCC--CCCcEEEEEEECCEEEEEEECCCCc-------------------------------
Confidence            899999999 699999999853  2357888888888888777766531                               


Q ss_pred             CCCCceeeeeecCCCceeccccccccccccccccccCCCceEEEEeCCCCceeEeeEEeeeeccccccCCCcccccccCC
Q psy9228         320 LEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVPLFTQKPLSYLALPT  399 (834)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~f~~~~~s~l~~~~  399 (834)
                                                                                                      
T Consensus       110 --------------------------------------------------------------------------------  109 (422)
T 1h30_A          110 --------------------------------------------------------------------------------  109 (422)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccceeEEEEEEEeeCCCCeeEEEeccCCccccCCCCCeEEEEEECcEEEEEEecccEEEEeeeeecCCCeEEEEEEEE
Q psy9228         400 LTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVGLVVLRSKVTLVPHEWVVVTIIKD  479 (834)
Q Consensus       400 ~~~~~~~~~i~~~frt~~~~GlLl~~~~~~~~~~~~~~d~~~l~L~~G~l~~~~~~G~~~i~s~~~~~dg~wH~V~v~~~  479 (834)
                                                                                ..+.+...++||+||+|++.|.
T Consensus       110 ----------------------------------------------------------~~~~~~~~~nDg~WH~V~v~r~  131 (422)
T 1h30_A          110 ----------------------------------------------------------RVTSSGPVINHGMWQTISVEEL  131 (422)
T ss_dssp             ----------------------------------------------------------EEEEEEEECCSSCCEEEEEEEC
T ss_pred             ----------------------------------------------------------EEEecCceecCCCCEEEEEEEc
Confidence                                                                      2334567899999999999999


Q ss_pred             CCeEEEEECCeeeeeeecCCCcccccc---CCCceeeccccCCCcccCcCcccccCceeEEeeeEEcCee-eeecccccc
Q psy9228         480 FKEGKLSVGGEPLIVGSTPGEKLQVLN---LRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSE-LDLINSAVD  555 (834)
Q Consensus       480 ~~~~~l~VD~~~~~~~~~~g~~~~~l~---~~~~l~iGG~~~~~~~~~~~~~~~~gF~GCi~~v~ing~~-~~~~~~~~~  555 (834)
                      ++.++|.||+........++. ...|+   +..++||||+|....  ........+|.|||+++.+|+.. +++.... .
T Consensus       132 ~~~~~L~VD~~~~~~~~~~g~-~~~l~~~~~~~~lyvGG~p~~~~--~~~~~~~~~F~GCi~~v~i~~~~~~~l~~~~-~  207 (422)
T 1h30_A          132 ARNLVIKVNRDAVMKIAVAGD-LFQPERGLYHLNLTVGGIPFHEK--DLVQPINPRLDGCMRSWNWLNGEDTTIQETV-K  207 (422)
T ss_dssp             SSEEEEEETTEEEEEEECCSC-SSEEETTEEECEEEESSCSSCGG--GSSSCCCCCCCEEEEEEEEC---------CC-C
T ss_pred             CCEEEEEECCeeeEEeecCCc-ccccccccccceEEEecCccccc--ccccccCCCCeEEEEEeEECCccccchhhhh-h
Confidence            999999999998777667776 55666   568999999997532  12223467899999999995543 3443210 0


Q ss_pred             cCCcccCCCCCCCCCCCCCCCCCCCeecccCCCCCceeeecCCCCCCCCCccCccCCCCCCccCCCceeeecCCCcEEcC
Q psy9228         556 SANIMDCSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDSYECLC  635 (834)
Q Consensus       556 ~~~~~~C~~~~~~~~C~~~pC~ngg~C~~~~~~~~~~~C~C~~G~~G~~Ce~~~~~C~~~~pC~ngg~C~~~~~~~~C~C  635 (834)
                      ....                                                  .      ||..               
T Consensus       208 ~~~~--------------------------------------------------~------~C~~---------------  216 (422)
T 1h30_A          208 VNTR--------------------------------------------------M------QCFS---------------  216 (422)
T ss_dssp             CCGG--------------------------------------------------G------SEES---------------
T ss_pred             cccC--------------------------------------------------C------CCCC---------------
Confidence            0000                                                  0      2211               


Q ss_pred             CCCCCCCCcccccccceeeEEcCCceeeechhhh--h-----hccCcceEEEEEEeCCCCeeEEecCCCCCCCCCCcceE
Q psy9228         636 SLGYAPPNCAKRVSIGSEVHFLGEGYVELKKELI--E-----ERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFI  708 (834)
Q Consensus       636 ~~g~~G~~Ce~~~~~~~~~~F~g~s~~~~~~~~~--~-----~~~~~~~i~~~frT~~~~GlLl~~~~~~~~~~~~~~~~  708 (834)
                                 ..  .....|.|+||++|+.+..  +     .......|+|+|||++++|+|||.+...    ...||+
T Consensus       217 -----------~~--~~g~~F~g~s~~~~~~~~~~lp~~~~~~~~~~~~is~~fRT~~~~GlLl~~~~~~----~~~d~l  279 (422)
T 1h30_A          217 -----------VT--ERGSFYPGSGFAFYSLDYMRTPLDVGTESTWEVEVVAHIRPAADTGVLFALWAPD----LRAVPL  279 (422)
T ss_dssp             -----------SC--BSSEEECSSCCEEECCCCBC--------CCBCEEEEEEEEESSSCEEEEEEEEGG----GTEEEE
T ss_pred             -----------cC--CCCceECCCeEEEEecCccccccccccccccceEEEEEEecCCCCEEEEEecCCC----cCCCcE
Confidence                       00  0235799999999864321  0     1124679999999999999999986321    115899


Q ss_pred             EEEEECCEE-------EEEEEcCCcEEEEEeCCceecCCCcEEE--EEEEECCEEEEEEcCeeeecccCC----CCc---
Q psy9228         709 AVAVVNGYL-------EYSYDLGDGVVTIKFSKKPVNDGIKHSV--NVTRINKFGSLEVDSVIVGKGESP----GSQ---  772 (834)
Q Consensus       709 ~l~l~~G~l-------~~~~~~g~~~~~l~~s~~~~nDg~wH~V--~i~r~~~~~~l~VD~~~~~~~~~~----~~~---  772 (834)
                      +|+|+||++       ++.++.+++. +++ +..+||||+||+|  ++.|.++.  |.||+........+    +..   
T Consensus       280 ~l~L~~G~le~~~~~~~l~~~~~~g~-~~~-~~~~l~DG~WH~V~~~l~~~~~~--L~vD~~~~~~~~~~~~~~~~~~~~  355 (422)
T 1h30_A          280 SVALVDYHSTKKLKKQLVVLAVEHTA-LAL-MEIKVCDGQEHVVTVSLRDGEAT--LEVDGTRGQSEVSAAQLQERLAVL  355 (422)
T ss_dssp             EEEEESCC-----CCCEEEEEETTEE-EEE-EECCTTSSCCEEEEEEEETTEEE--EEETTEECEESSCHHHHHHHHHHH
T ss_pred             EEEEEcCccccccccceEEEEeCCee-EEE-eeecccCCCEeEeEEEEEEeccE--EEEeCCccceeechhhcccchhhh
Confidence            999999987       5777777776 344 3578999999999  77766544  99999875543221    111   


Q ss_pred             -cceecCCceEEcCcCCCCCCCCCccCCCceEEEEEEEECCceecccCCCCCCC--ccccccc
Q psy9228         773 -DVINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNIHIQNKHISNIGSSASSG--LHVMPWI  832 (834)
Q Consensus       773 -~~l~~~~~lyiGG~p~~~~~~~~~~~~~F~GCi~~v~in~~~~~~l~~~a~~~--~nv~~c~  832 (834)
                       ..++..++|||||+|+. .........+|+||| +|+||++ .++|..+....  ++..+|-
T Consensus       356 ~~~l~~~~~lyiGG~p~~-~~~~~~~~~~F~GCi-~l~ing~-~ldl~~a~~~~~~v~~~~Cp  415 (422)
T 1h30_A          356 ERHLRSPVLTFAGGLPDV-PVTSAPVTAFYRGCM-TLEVNRR-LLDLDEAAYKHSDITAHSCP  415 (422)
T ss_dssp             HHHHTSCCEEEESCCCSC-CTTSSSCCSBCCEEE-EEEETTE-ECCGGGSSEECTTSBTTCBC
T ss_pred             hhhhccCCceEEcccCCC-CccccCccCCccccE-EEEECCE-EecHHHHHHhcCCeecCCCC
Confidence             12566779999999984 222234567899999 6999997 55776543222  3345663

>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus}

Probab=100.00  E-value=1.3e-39  Score=380.03  Aligned_cols=342  Identities=23%  Similarity=0.335  Sum_probs=247.2

Q ss_pred             ccccccCCccccceeEEEEEEEeeCCCCeeEEEeccCCccccCCCCCeEEEEEECcEEEEEEeccc--EEEEe-eeeecC
Q psy9228         392 LSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVGL--VVLRS-KVTLVP  468 (834)
Q Consensus       392 ~s~l~~~~~~~~~~~~~i~~~frt~~~~GlLl~~~~~~~~~~~~~~d~~~l~L~~G~l~~~~~~G~--~~i~s-~~~~~d  468 (834)
                      .+|+.+++........+|+|+|||.+++|+|||.++.      ...||++|+|.+|++++++++|.  ..+.. ...++|
T Consensus        18 ~~~~~y~p~~~~~~~~~isl~FrT~~~~glLly~~~~------~~~dfl~l~L~~G~l~~~~~~G~g~~~l~~~~~~~~d   91 (608)
T 2wjs_A           18 DCVRTYRPEIKKGSYNNIVVHVKTAVADNLLFYLGSA------KFIDFLAIEMRKGKVSFLWDVGSGVGRVEYPDLTIDD   91 (608)
T ss_dssp             -CEEEECCCCSCTTEEEEEEEEEESCSCEEEEEEECS------SCSCEEEEEEETTEEEEEEESSSCEEEEECCSCCCTT
T ss_pred             CeEEEecCCCCCcccceEEEEEecCCCceEEEEeCCC------CCCcEEEEEEECCEEEEEEECCCCceEEeeCCccccC
Confidence            4666665433455678999999999999999999863      35899999999999999999984  45554 468999


Q ss_pred             CCeEEEEEEEECCeEEEEECCeee---------eeeecCCCccccccCC--CceeeccccCCCcccCcCcccccCceeEE
Q psy9228         469 HEWVVVTIIKDFKEGKLSVGGEPL---------IVGSTPGEKLQVLNLR--TPLYLGGYNIYHVTPSLSVEVTEGFHGCI  537 (834)
Q Consensus       469 g~wH~V~v~~~~~~~~l~VD~~~~---------~~~~~~g~~~~~l~~~--~~l~iGG~~~~~~~~~~~~~~~~gF~GCi  537 (834)
                      |+||+|.+.|.++.++|.||+...         ....+++. ...|+++  ..+||||+|.... .+... ...+|.|||
T Consensus        92 g~WH~V~v~r~~~~~~l~Vd~~~~~~~~~~~~~~~~~~~g~-~~~L~l~~~~~l~vGG~p~~~~-~~~~~-~~~~F~GCi  168 (608)
T 2wjs_A           92 SYWYRIEASRTGRNGSISVRALDGPKASMVPSTYHSVSPPG-YTILDVDANAMLFVGGLTGKIK-KADAV-RVITFTGCM  168 (608)
T ss_dssp             SCCEEEEEEEETTEEEEEEEESSSTTTTSCCCCEEEECCSS-CCSCCCCSSCEEEESSCCTTSC-CCTTC-CCCCCCEEE
T ss_pred             CceEEEEEEEeCCEEEEEEecccCccccccccccccccCCc-ceeeccCCCCcEEeCCcCcccc-CCccc-ccCCccEEE
Confidence            999999999999999999997653         23455665 5667765  6799999997422 11111 236899999


Q ss_pred             eeeEEcCeeeeecccccccCCcccCCCCCCCCCCCCCCCCCCCeecccCCCCCceeeecCCCCCCCCCccCccCCCCCCc
Q psy9228         538 STIDVLGSELDLINSAVDSANIMDCSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDV  617 (834)
Q Consensus       538 ~~v~ing~~~~~~~~~~~~~~~~~C~~~~~~~~C~~~pC~ngg~C~~~~~~~~~~~C~C~~G~~G~~Ce~~~~~C~~~~p  617 (834)
                      +++.+|++.+++.+.....   ..|.                                                     +
T Consensus       169 ~~l~in~~~i~l~~~~~~~---g~~~-----------------------------------------------------g  192 (608)
T 2wjs_A          169 GETYFDNKPIGLWNFREKE---GDCK-----------------------------------------------------G  192 (608)
T ss_dssp             CCCEESSSBC----CCEEE---SCCC-----------------------------------------------------C
T ss_pred             EEEEECCEEcccccccccc---CCCC-----------------------------------------------------C
Confidence            9999999998876431100   0010                                                     1


Q ss_pred             cCCCceeeecCCCcEEcCCCCCCCCCcccccccceeeEEcCCceeeechhhhhhccCcceEEEEEEeCCCCeeEEecCCC
Q psy9228         618 CKNGGMCKVTPDSYECLCSLGYAPPNCAKRVSIGSEVHFLGEGYVELKKELIEERRNEETIAFDFVTDDKNALLLWNGQP  697 (834)
Q Consensus       618 C~ngg~C~~~~~~~~C~C~~g~~G~~Ce~~~~~~~~~~F~g~s~~~~~~~~~~~~~~~~~i~~~frT~~~~GlLl~~~~~  697 (834)
                      |..                    ++.|+..   ..++.|.|+||+.++.... .......|+|+|||.+++|+|||++..
T Consensus       193 C~~--------------------~p~~~~~---~~~~~F~g~sy~~~~~~~~-~~~~~~~isl~FrT~~~~GlLl~~~~~  248 (608)
T 2wjs_A          193 CTV--------------------SPQVEDS---EGTIQFDGEGYALVSRPIR-WYPNISTVMFKFRTFSSSALLMYLATR  248 (608)
T ss_dssp             C----------------------------C---CCCEEEEEEEEEEEECCTT-CBTTEEEEEEEEEESCSEEEEEEEECT
T ss_pred             CCC--------------------CcccccC---CcceEECCCcceEEecccc-CCCcceEEEEEEEeCCCCeEEEEecCC
Confidence            110                    0123221   1257899999999864321 113568999999999999999998653


Q ss_pred             CCCCCCCcceEEEEEECCEEEEEEEcCCcEEEEEeCCceecCCCcEEEEEEEECCEEEEEEcCee-----eecccCCCCc
Q psy9228         698 SYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVI-----VGKGESPGSQ  772 (834)
Q Consensus       698 ~~~~~~~~~~~~l~l~~G~l~~~~~~g~~~~~l~~s~~~~nDg~wH~V~i~r~~~~~~l~VD~~~-----~~~~~~~~~~  772 (834)
                      .     ..||++|+|++|+|++++++|++...+. +..++|||+||+|.|.|.++.++|.||+..     ......++..
T Consensus       249 ~-----~~d~l~L~L~~G~l~~~~~~g~~~~~l~-s~~~~nDg~WH~V~v~r~~~~~~L~VD~~~~~~~~~~~~~~~g~~  322 (608)
T 2wjs_A          249 D-----LKDFMSVELSDGHVKVSYDLGSGMTSVV-SNQNHNDGKWKAFTLSRIQKQANISIVDIDSNQEENVATSSSGNN  322 (608)
T ss_dssp             T-----SSSEEEEEEETTEEEEEEECSSCEEEEE-EEEECCSSSCEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSSC
T ss_pred             C-----CCceEEEEEECCEEEEEEECCCCcEEEE-cCccccCCceEEEEEEEecceEEEEEeccccccccccccccCCcc
Confidence            2     2699999999999999999999887777 678999999999999999999999999732     2222344444


Q ss_pred             ccee--cCCceEEcCcCCCCCCCCCccCCCceEEEEEEEECCceecccCCCCCCCccccc
Q psy9228         773 DVIN--TRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNIHIQNKHISNIGSSASSGLHVMP  830 (834)
Q Consensus       773 ~~l~--~~~~lyiGG~p~~~~~~~~~~~~~F~GCi~~v~in~~~~~~l~~~a~~~~nv~~  830 (834)
                      ..++  ....+||||+|............+|+|||++|+||++. ++|... ....+|.+
T Consensus       323 ~~l~~~~~~~lylGG~p~~~~~~~~~~~~~F~GCi~~v~in~~~-~~l~~~-~~~~~v~~  380 (608)
T 2wjs_A          323 FGLDLKADDKIYFGGLPTLRNLRPEVNVKKYSGCLKDIEISRTP-YNILSS-PDYVGVTK  380 (608)
T ss_dssp             CCCCCCTTCEEEESCCCCCSCCCTTCCCCCCEEEEEEEEETTEE-ECGGGC-SSCEEEEE
T ss_pred             ccccccCCCceEEeccCcccccCcccccCCceEEeeeEEECCEe-cCcccc-cccccccc
Confidence            4565  45789999999864333334567899999999999975 466553 23455554

>3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal binding Pro; 1.50A {Homo sapiens} PDB: 3sh5_A

Probab=99.97  E-value=5.3e-30  Score=252.30  Aligned_cols=180  Identities=29%  Similarity=0.585  Sum_probs=148.8

Q ss_pred             eeeEEcCCceeeechhhhhhc--cCcceEEEEEEeCCCCeeEEecCCCCCCCCCCcceEEEEEECCEEEEEEEcCCcEEE
Q psy9228         652 SEVHFLGEGYVELKKELIEER--RNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVT  729 (834)
Q Consensus       652 ~~~~F~g~s~~~~~~~~~~~~--~~~~~i~~~frT~~~~GlLl~~~~~~~~~~~~~~~~~l~l~~G~l~~~~~~g~~~~~  729 (834)
                      .++.|.|+||++|+.......  .....|+|+|||.+++|+|||++....+.....|||+|+|.+|+|++++++|++...
T Consensus         6 ~~~~F~G~syl~lp~~~~~~~~~~~~~~is~~frT~~~~GlLl~~~~~~~~~~~~~d~l~l~L~~G~l~~~~~~G~g~~~   85 (195)
T 3sh4_A            6 YGAYFHDDGFLAFPGHVFSRSLPEVPETIELEVRTSTASGLLLWQGVEVGEAGQGKDFISLGLQDGHLVFRYQLGSGEAR   85 (195)
T ss_dssp             TEEEEEEEEEEEECGGGGCCCSTTCCEEEEEEEEECCSSEEEEEECCCTTCTTSTTCEEEEEEETTEEEEEEECSSCEEE
T ss_pred             ccCEECCCEEEEEccccccccccccceEEEEEEEeCCCCcEEEEecccccCCCCCCcEEEEEEeCCEEEEEEECCCCcEE
Confidence            578999999999987643221  245799999999999999999875321122347999999999999999999999887


Q ss_pred             EEeCCceecCCCcEEEEEEEECCEEEEEEcCeeeecccCCCCccceecCCceEEcCcCCCCCCCCCccCCCceEEEEEEE
Q psy9228         730 IKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNIH  809 (834)
Q Consensus       730 l~~s~~~~nDg~wH~V~i~r~~~~~~l~VD~~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~~~~~~~~~~~F~GCi~~v~  809 (834)
                      +. +..+||||+||+|.+.|.++.++|+||+........++....+++.++|||||+|+...........+|+|||++|+
T Consensus        86 ~~-s~~~l~Dg~WH~V~v~r~~~~~~L~VD~~~~~~~~~~~~~~~l~~~~~lyvGG~p~~~~~~~~~~~~~F~GCi~~l~  164 (195)
T 3sh4_A           86 LV-SEDPINDGEWHRVTALREGRRGSIQVDGEELVSGRSPGPNVAVNAKGSVYIGGAPDVATLTGGRFSSGITGCVKNLV  164 (195)
T ss_dssp             EE-EEEECCSSSCEEEEEEEETTEEEEEETTCCCEEEECCSSCCCCCCCSCEEESCCTTHHHHTTTSCCCCCSEEEEEEE
T ss_pred             EE-cCceeCCCCeEEEEEEEeCCEEEEEECCeeeeeeeCCCCcccccCCCCEEECCCCCcccccccccccCCEEEEEEEE
Confidence            77 78899999999999999999999999998776666666666788889999999997532233345789999999999


Q ss_pred             ECC-------ceecccCCCCCCCccccccc
Q psy9228         810 IQN-------KHISNIGSSASSGLHVMPWI  832 (834)
Q Consensus       810 in~-------~~~~~l~~~a~~~~nv~~c~  832 (834)
                      ||+       .+.+||+..|..+.||.+|-
T Consensus       165 in~~~~~~~~~~~ldl~~~a~~~~nv~~C~  194 (195)
T 3sh4_A          165 LHSARPGAPPPQPLDLQHRAQAGANTRPCP  194 (195)
T ss_dssp             EEECCTTCCCCCCCCTTTSCSEEEEEEECC
T ss_pred             ECCcCCCCCCceeecchhhhccCCccCCCC
Confidence            985       34789999999999999994

>1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} SCOP: b.29.1.4 PDB: 1pz8_A 1pz9_A 1q56_A

Probab=99.96  E-value=1.2e-28  Score=244.91  Aligned_cols=187  Identities=21%  Similarity=0.398  Sum_probs=146.6

Q ss_pred             CCCCCCCcccccccceeeEEcCCceeeechhhh--------h-----hccCcceEEEEEEeCCCCeeEEecCCCCCCCCC
Q psy9228         637 LGYAPPNCAKRVSIGSEVHFLGEGYVELKKELI--------E-----ERRNEETIAFDFVTDDKNALLLWNGQPSYKNGI  703 (834)
Q Consensus       637 ~g~~G~~Ce~~~~~~~~~~F~g~s~~~~~~~~~--------~-----~~~~~~~i~~~frT~~~~GlLl~~~~~~~~~~~  703 (834)
                      .+|.++.|+..     ++.|.|+||+.|+....        .     ......+|+|+|||.+++|+|||.+...    .
T Consensus         3 ~~~e~~~~~~~-----~~~F~G~sy~~~~~~~~~~~~~l~~~~~~~~~~~~~~~is~~frT~~~~GlLl~~g~~~----~   73 (204)
T 1pz7_A            3 VIIEKAAGDAE-----AIAFDGRTYMEYHNAVTKSPDALDYPAEPSEKALQSNHFELSIKTEATQGLILWSGKGL----E   73 (204)
T ss_dssp             ----CTTSSSC-----CEEEESSCCEEEECCSCCC-------CCSSCEEESEEEEEEEEEECCSSEEEEEESCCS----T
T ss_pred             ccccccccccc-----ceeECCceeEEEcCcccccccccccccccccccceeEEEEEEEEcCCCCeEEEEeCCCC----C
Confidence            35667777754     57899999999974311        0     0124678999999999999999987521    2


Q ss_pred             CcceEEEEEECCEEEEEEEcCCcEEEEEeCCceecCCCcEEEEEEEECCEEEEEEcCeeeecccCCCCccceecCCceEE
Q psy9228         704 GREFIAVAVVNGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYL  783 (834)
Q Consensus       704 ~~~~~~l~l~~G~l~~~~~~g~~~~~l~~s~~~~nDg~wH~V~i~r~~~~~~l~VD~~~~~~~~~~~~~~~l~~~~~lyi  783 (834)
                      ..||++|+|.+|+|++++++|++...|. +..+||||+||+|.|.|.++.++|+||+.......+++....++..++|||
T Consensus        74 ~~dfl~l~L~~G~l~~~~~~G~g~~~v~-s~~~lnDg~WH~V~v~r~~~~~~L~VD~~~~~~~~~~~~~~~l~~~~~lyl  152 (204)
T 1pz7_A           74 RSDYIALAIVDGFVQMMYDLGSKPVVLR-STVPINTNHWTHIKAYRVQREGSLQVGNEAPITGSSPLGATQLDTDGALWL  152 (204)
T ss_dssp             TCCEEEEEEETTEEEEEEESSSCCEEEE-EEEECCSSSCEEEEEEEETTEEEEEETTSCCEEEECCSSCCCEEECCEEEE
T ss_pred             CCCeEEEEEECCEEEEEEECCCCeEEEE-CCcccCCCCeEEEEEEEeCCEEEEEECCcceEEEECCCCCceEcCCCCEEE
Confidence            3699999999999999999999888776 778999999999999999999999999987666666666677888999999


Q ss_pred             cCcCCCCCCC--CCccCCCceEEEEEEEECCceecccCCCCCCCcccccccCC
Q psy9228         784 GGTPNMDLMT--GGRYVHPMSGLMMNIHIQNKHISNIGSSASSGLHVMPWIRK  834 (834)
Q Consensus       784 GG~p~~~~~~--~~~~~~~F~GCi~~v~in~~~~~~l~~~a~~~~nv~~c~~~  834 (834)
                      ||+|......  +.....+|+|||++|+||++ .++|...+....+|.+|-.|
T Consensus       153 GG~p~~~~~~~~~~~~~~~F~GCi~~l~in~~-~~dl~~~~~~~~~v~~C~~~  204 (204)
T 1pz7_A          153 GGMERLSVAHKLPKAYSTGFIGCIRDVIVDRQ-ELHLVEDALNNPTILHCSAK  204 (204)
T ss_dssp             SSCSCCSTTTTSCGGGGSBCEEEEEEEEETTE-ECCTTTSCSSCCCCCBC---
T ss_pred             ecCCCcccccccccccCCCceEEEEEEEECCE-EccchhhhhcCCCCCCCCCC
Confidence            9999763221  12246789999999999996 67888777778889999765

>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus}

Probab=99.96  E-value=1.1e-27  Score=263.36  Aligned_cols=316  Identities=19%  Similarity=0.280  Sum_probs=211.5

Q ss_pred             cCCCCcceEEcCCCCC--cceEEEEEEEcccCCCceEEEeecccCCCCCCeEEEEEecCeEEEEEecCCCcc-eecCCCC
Q psy9228         220 PAFKHGSYLAYPTPKT--MRKFKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKHMEFRFDTGSATP-LYSNDAP  296 (834)
Q Consensus       220 ~~F~g~~y~~~~~~~~--~~~~~i~l~f~t~~~~~glll~~~~~~~~~~d~~~l~l~~G~v~~~~~~g~~~~-~~~~~~~  296 (834)
                      +.+.+.||+.++.+..  .....|+|.|||. .++|+|||.+..  ...||++|+|.+|++++++++|++.. +.+....
T Consensus        24 Fg~~~~S~~~~~~~~~~~~~~~~is~~frT~-~~~GlLly~~~~--~~~d~~~l~L~~G~l~~~~~~g~~~~~~~~~~~~  100 (383)
T 2jd4_A           24 FGLSQNSHLVLPLQQSDVRKRLQVQLSIRTF-ASSGLIYYVAHQ--NQMDYATLQLQEGRLHFMFDLGKGRTKVSHPALL  100 (383)
T ss_dssp             CCSSTTCEEEEECCSCCCSSEEEEEEEEEEC-CSCEEEEEEECT--TSSSEEEEEEETTEEEEEEECSSCEEEEECCCCC
T ss_pred             cCCCCCeeEEEeCCchhcccceEEEEEEEcC-CCCeEEEEeCCC--CCCcEEEEEEECCEEEEEEECCCCeEEEeCccee
Confidence            3444589999987543  3678999999999 699999999754  23699999999999999999998863 4444444


Q ss_pred             Cccccc-ceeccCCCeEEEEecCCCCCCceee--eeecCCCceeccccccccccccccccccCCCceEEEEeCCC--Cce
Q psy9228         297 AFNPVS-TKEAPYGSKITLTCNNDLEAPVEYT--WSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCKVSNK--DMT  371 (834)
Q Consensus       297 ~~~~~~-~~~~~~~~~v~l~vd~~~~~~~~~~--~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~C~~~~~--~~~  371 (834)
                      ....|| +...|.++.++|+||..........  .........+++||.|.....  ........++.+|+....  +..
T Consensus       101 ~Dg~WH~V~v~r~~~~~~L~VD~~~~~~~~~~g~~~~l~~~~~l~vGG~p~~~~~--~~~~~~~~~F~GCi~~l~in~~~  178 (383)
T 2jd4_A          101 SDGKWHTVKTEYIKRKAFMTVDGQESPSVTVVGKATTLDVERKLYLGGLPSHYRA--RNIGTITHSIPACIGEIMVNGQQ  178 (383)
T ss_dssp             TTSSCEEEEEEEETTEEEEEETTEECCCEECCSSCCCCCCCSEEEESSCCTTCCC--CSSCSCCSBCCEEEEEEEETTEE
T ss_pred             cCCCcEEEEEEEeCCEEEEEEcCccccceecCCCcceecCCCCeEEeccCccccc--ccccccCCCceEEeEEEEECCEE
Confidence            555566 4566788999999987533221110  111123457899998854221  111223456778876531  111


Q ss_pred             eE------eeEEeeeec--cccccCCCcccccccC-CccccceeEEEEEEEeeCCCCeeEEEeccCCccccCCCCCeEEE
Q psy9228         372 VE------IPSILLVTD--SVPLFTQKPLSYLALP-TLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSF  442 (834)
Q Consensus       372 ~~------~~~~~~~~~--~~~~f~~~~~s~l~~~-~~~~~~~~~~i~~~frt~~~~GlLl~~~~~~~~~~~~~~d~~~l  442 (834)
                      .+      +........  ....+| ...+|+.++ ........++|+|+|||.+++|+|||..+       ...||++|
T Consensus       179 l~l~~~~~~~~~~~C~~~~~~g~~F-~g~sy~~~~~~~~~~~~~~~isl~frT~~~~GlLl~~~~-------~~~d~l~l  250 (383)
T 2jd4_A          179 LDKDRPLSASAVDRCYVVAQEGTFF-EGSGYAALVKEGYKVRLDLQITLEFRTTSKNGVLLGISS-------AKVDAIGL  250 (383)
T ss_dssp             CCTTSCSEEESCBCCBSSEESSEEE-EEEEEEEEEEEEECCBSCEEEEEEEEESCSCEEEEEEEC-------SSSCEEEE
T ss_pred             eccCCccccCccccccCcCccCceE-CCCeEEEEecCccccCCceEEEEEEEeCCCCEEEEEecC-------CCCcEEEE
Confidence            10      000000000  011222 235788873 22223456899999999999999999864       25799999


Q ss_pred             EEECcEEEEEEeccc--EEEEe----eeeecCCCeEEEEEEEECCeEEEEECCeeeeeeecCCCccccccCCCceeeccc
Q psy9228         443 GLEDGYPVFRFDVGL--VVLRS----KVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGY  516 (834)
Q Consensus       443 ~L~~G~l~~~~~~G~--~~i~s----~~~~~dg~wH~V~v~~~~~~~~l~VD~~~~~~~~~~g~~~~~l~~~~~l~iGG~  516 (834)
                      +|.+|+++++++.|.  ..+..    ...++||+||+|.+.|.++.++|.||+........++. ...++...++||||+
T Consensus       251 ~L~~G~l~~~~~~g~g~~~~~~~~~~~~~l~DG~WH~V~l~~~~~~~~L~VD~~~~~~~~~~~~-~~~l~~~~~lylGG~  329 (383)
T 2jd4_A          251 EIVDGKVLFHVNNGAGRITATYQPRAARALCDGKWHTLQAHKSKHRIVLTVDGNSVRAESPHTH-STSADTNDPIYVGGY  329 (383)
T ss_dssp             EEETTEEEEEEESSSCEEEEEECCSSTTGGGSSSCEEEEEEEETTEEEEEETTEEEEEC----C-CCCBCCCEEEEESCC
T ss_pred             EEECCEEEEEEECCCCcEEEEEecCCCccccCCCcEEEEEEEcCCEEEEEECCeecccccCCCC-cccccCCCCEEEecc
Confidence            999999999999974  33332    35699999999999999999999999987665443333 446778889999999


Q ss_pred             cCCCcccCcCcccccCceeEEeeeEEcCee----eeecc
Q psy9228         517 NIYHVTPSLSVEVTEGFHGCISTIDVLGSE----LDLIN  551 (834)
Q Consensus       517 ~~~~~~~~~~~~~~~gF~GCi~~v~ing~~----~~~~~  551 (834)
                      |....  ........+|.|||++|.+|+..    +|+..
T Consensus       330 p~~~~--~~~~~~~~~F~GCi~~v~in~~~~~~~~dl~~  366 (383)
T 2jd4_A          330 PAHIK--QNSLSSRASFRGCVRNLRLSRGSQVQSLDLSR  366 (383)
T ss_dssp             CTTSC--CTTCSCCCBCEEEEEEEEEC---CCEECCGGG
T ss_pred             ccccc--cCCccccCCCceEccEEEECCCCcccccChhh
Confidence            87432  12234567899999999999864    67654

>3v64_A Low-density lipoprotein receptor-related protein; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} PDB: 3v65_A

Probab=99.96  E-value=4.7e-28  Score=237.55  Aligned_cols=177  Identities=24%  Similarity=0.407  Sum_probs=147.3

Q ss_pred             eeeEEcCCceeeechhhhh----------hccCcceEEEEEEeCCCCeeEEecCCCCCCCCCCcceEEEEEECCEEEEEE
Q psy9228         652 SEVHFLGEGYVELKKELIE----------ERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSY  721 (834)
Q Consensus       652 ~~~~F~g~s~~~~~~~~~~----------~~~~~~~i~~~frT~~~~GlLl~~~~~~~~~~~~~~~~~l~l~~G~l~~~~  721 (834)
                      .++.|.|+||+.|......          ......+|+|+|||.+++|+|||.+...    ...||++|+|.+|+|++++
T Consensus         3 ~~~~F~G~sy~~y~~~~~~~~~~~~~~~~~~~~~~~isl~frT~~~~GlLl~~~~~~----~~~d~l~l~L~~G~l~~~~   78 (191)
T 3v64_A            3 ETLAFDGRTYIEYLNAVIESELTNEIPAEKALQSNHFELSLRTEATQGLVLWIGKAA----ERADYMALAIVDGHLQLSY   78 (191)
T ss_dssp             CEEEEESSCCEEEECSCCCHHHHCCCCCCEEESEEEEEEEEECSCSSEEEEEESCCS----TTCCEEEEEEETTEEEEEE
T ss_pred             ccceecCceeEEEccccccccccccccccccccceEEEEEEEeCCCCeEEEEeCCCC----CCCcEEEEEEECCEEEEEE
Confidence            3689999999999643211          1136689999999999999999997631    2369999999999999999


Q ss_pred             EcCCcEEEEEeCCceecCCCcEEEEEEEECCEEEEEEcCeeeecccCCCCccceecCCceEEcCcCCCCCCC--CCccCC
Q psy9228         722 DLGDGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPNMDLMT--GGRYVH  799 (834)
Q Consensus       722 ~~g~~~~~l~~s~~~~nDg~wH~V~i~r~~~~~~l~VD~~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~~~~--~~~~~~  799 (834)
                      ++|++..++. +..++|||+||+|.+.|.++.++|+||+........++....+++.++|||||+|......  ......
T Consensus        79 ~~G~~~~~l~-s~~~v~Dg~WH~V~v~r~~~~~~L~VD~~~~~~~~~~~~~~~l~~~~~lylGG~p~~~~~~~~~~~~~~  157 (191)
T 3v64_A           79 DLGSQPVVLR-STVKVNTNRWLRIRAHREHREGSLQVGNEAPVTGSSPLGATQLDTDGALWLGGLQKLPVGQALPKAYGT  157 (191)
T ss_dssp             ESSSCCEEEE-EEEECTTSSCEEEEEEEETTEEEEEETTSCCEEEECCTTCCCEEECSEEEESCCSSCCSSCCSCGGGTS
T ss_pred             ECCCccEEEe-cCccccCCCCEEEEEEEeCCEEEEEECCeeeEeEECCCCcceeccCCceEEcccCcccccccccccccC
Confidence            9999888887 6789999999999999999999999999876666667777788999999999999763321  223567


Q ss_pred             CceEEEEEEEECCceecccCCCCCCCcccccccCC
Q psy9228         800 PMSGLMMNIHIQNKHISNIGSSASSGLHVMPWIRK  834 (834)
Q Consensus       800 ~F~GCi~~v~in~~~~~~l~~~a~~~~nv~~c~~~  834 (834)
                      +|+|||++|+||++ .++|.+.+....++.+|--|
T Consensus       158 ~F~GCi~~l~in~~-~l~l~~~~~~~~~~~gC~~~  191 (191)
T 3v64_A          158 GFVGCLRDVVVGHR-QLHLLEDAVTKPELRPCPTP  191 (191)
T ss_dssp             BCEEEEEEEEETTE-ECCTTTTCSBCCCCCCCSCC
T ss_pred             CceEEeeEEEECCE-EccchhHHhcCCCCCCCCCC
Confidence            89999999999997 57888889899999999765

>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A

Probab=99.96  E-value=6.5e-27  Score=257.74  Aligned_cols=314  Identities=16%  Similarity=0.191  Sum_probs=214.7

Q ss_pred             ccCCCCcceEEcCCCCC--cceEEEEEEEcccCCCceEEEeecccCCCCCCeEEEEEecCeEEEEEecCCCcc-eecCCC
Q psy9228         219 QPAFKHGSYLAYPTPKT--MRKFKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKHMEFRFDTGSATP-LYSNDA  295 (834)
Q Consensus       219 ~~~F~g~~y~~~~~~~~--~~~~~i~l~f~t~~~~~glll~~~~~~~~~~d~~~l~l~~G~v~~~~~~g~~~~-~~~~~~  295 (834)
                      .+.+...+|+.++.+..  .....|+|.|||. .++|+|||.+..  ...||++|+|.+|++++++++|++.. +.+...
T Consensus        37 ~Fg~~~~s~~~~~~~~~~~~~~~~is~~frT~-~~~GlLly~~~~--~~~dfi~l~L~~G~l~~~~~~g~g~~~~~~~~~  113 (394)
T 1dyk_A           37 QFGLSRNSHIAIAFDDTKVKNRLTIELEVRTE-AESGLLFYMARI--NHADFATVQLRNGFPYFSYDLGSGDTSTMIPTK  113 (394)
T ss_dssp             ECCSSTTCEEEEECCGGGGSSEEEEEEEEEEC-CSCEEEEEEECT--TSSSEEEEEEETTEEEEEEESSSCEEEEECCSC
T ss_pred             ecCCCCCcEEEEEcCccccccceEEEEEEEeC-CCCeEEEEcCCC--CCCceEEEEEECCEEEEEEECCCCceEEEcccc
Confidence            34445579988876533  3678999999999 699999999753  23699999999999999999998863 334444


Q ss_pred             CCcccccc-eeccCCCeEEEEecCCCCCCce-eeeeecCCCceeccccccccccccccccccCCCceEEEEeCCC--Cce
Q psy9228         296 PAFNPVST-KEAPYGSKITLTCNNDLEAPVE-YTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCKVSNK--DMT  371 (834)
Q Consensus       296 ~~~~~~~~-~~~~~~~~v~l~vd~~~~~~~~-~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~C~~~~~--~~~  371 (834)
                      .....||. ...|.++.+.|+||........ ...........+++||.|......  .......++.+|+....  +..
T Consensus       114 ~~Dg~WH~V~v~r~~~~~~L~VD~~~~~~~~~g~~~~l~~~~~l~vGG~p~~~~~~--~~~~~~~~F~GCi~~l~in~~~  191 (394)
T 1dyk_A          114 INDGQWHKIKIVRVKQEGILYVDDASSQTISPKKADILDVVGILYVGGLPINYTTR--RIGPVTYSLDGCVRNLHMEQAP  191 (394)
T ss_dssp             CCSSSCEEEEEEEETTEEEEEETTEEEEEECSTTCCCCCCCSEEEESSCCTTCCCC--SSCSCCSBCSEEEEEEEESSSC
T ss_pred             cCCCCEEEEEEEEeCCEEEEEEcCcccceecCCCCceecCCCCEEEcccCCccccc--ccccCCCCccEeeeEEEECCEE
Confidence            45555664 4667888999999864321110 000111223578899987543211  11122346778876531  111


Q ss_pred             e------------EeeEEeeeeccccccCCCcccccccCCccccceeEEEEEEEeeCCCCeeEEEeccCCccccCCCCCe
Q psy9228         372 V------------EIPSILLVTDSVPLFTQKPLSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDF  439 (834)
Q Consensus       372 ~------------~~~~~~~~~~~~~~f~~~~~s~l~~~~~~~~~~~~~i~~~frt~~~~GlLl~~~~~~~~~~~~~~d~  439 (834)
                      .            .|....    ....+| ...+|+.+.........++|+|+|||.+++|+|||...       ...+|
T Consensus       192 ~~l~~~~~~~~~~~C~~~~----~~g~~F-~g~gy~~~~~~~~~~~~~~is~~frT~~~~GlLl~~~~-------~~~~~  259 (394)
T 1dyk_A          192 VDLDQPTSSFHVGTCFANA----ESGTYF-DGTGFAKAVGGFKVGLDLLVEFEFRTTRPTGVLLGVSS-------QKMDG  259 (394)
T ss_dssp             CCTTSCSEEESCBCCBSSE----EESEEE-EEEEEEECCSSBCCBSEEEEEEEEEESCSCEEEEEEEC-------SSSCE
T ss_pred             ecCCCccccCcCCCCCCCC----ccCcee-CCCceeEEcCCcccCCceEEEEEEEeCCCCEEEEEecC-------CCCCE
Confidence            0            111100    112223 23577765433334457899999999999999999852       35799


Q ss_pred             EEEEEECcEEEEEEeccc--EEEEe----eeeecCCCeEEEEEEEECCeEEEEECCeeeeeeecCCCccccccCCCceee
Q psy9228         440 VSFGLEDGYPVFRFDVGL--VVLRS----KVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYL  513 (834)
Q Consensus       440 ~~l~L~~G~l~~~~~~G~--~~i~s----~~~~~dg~wH~V~v~~~~~~~~l~VD~~~~~~~~~~g~~~~~l~~~~~l~i  513 (834)
                      ++|+|.+|+++++++.|.  ..+..    ...++||+||+|.+.+.++.++|.||+........++. ...++....+||
T Consensus       260 l~l~L~~G~l~~~~~~g~~~~~~~~~~~~~~~l~DG~WH~V~v~~~~~~~~L~VD~~~~~~~~~~~~-~~~l~~~~~lyl  338 (394)
T 1dyk_A          260 MGIEMIDEKLMFHVDNGAGRFTAIYDAEIPGHMCNGQWHKVTAKKIKNRLELVVDGNQVDAQSPNSA-STSADTNDPVFV  338 (394)
T ss_dssp             EEEEEETTEEEEEEESSSCCEEEEECCCSTTSTTSSSCEEEEEEEETTEEEEEETTEEEEEECCCTT-CCCBCCCBCCEE
T ss_pred             EEEEEECCEEEEEEECCCCcEEEEEecCCCccccCCceEEEEEEEeCCEEEEEECCcccccccCCCc-ceecccCCCEEE
Confidence            999999999999999973  33332    56799999999999999999999999987665443333 456777888999


Q ss_pred             ccccCCCcccCcCcccccCceeEEeeeEEcC-----eeeeeccc
Q psy9228         514 GGYNIYHVTPSLSVEVTEGFHGCISTIDVLG-----SELDLINS  552 (834)
Q Consensus       514 GG~~~~~~~~~~~~~~~~gF~GCi~~v~ing-----~~~~~~~~  552 (834)
                      ||+|....  ........+|.|||++|.+|+     +.+++...
T Consensus       339 GG~p~~~~--~~~~~~~~~F~GCi~~v~in~~~~~~~~~d~~~a  380 (394)
T 1dyk_A          339 GGFPGGLN--QFGLTTNIRFRGCIRSLKLTKGTGKPLEVNFAKA  380 (394)
T ss_dssp             SCCCTTCC--CTTCSCCCCCEEEEEEEEEECTTSCCEECCGGGC
T ss_pred             cCCCcccc--ccccccCCCCceeeeEEEECCccCcccccchhHh
Confidence            99998421  122345678999999999998     66777653

>3pve_A Agrin, AGRN protein; mRNA splicing, structural genomics, PSI-2, protein structure initiative; 1.40A {Mus musculus}

Probab=99.95  E-value=3.3e-27  Score=231.29  Aligned_cols=174  Identities=26%  Similarity=0.440  Sum_probs=141.4

Q ss_pred             eeeEEcCCceeeechhhhh--hccCcceEEEEEEeCCCCeeEEecCCCCCCCCCCcceEEEEEECCEEEEEEEcCCcEEE
Q psy9228         652 SEVHFLGEGYVELKKELIE--ERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVT  729 (834)
Q Consensus       652 ~~~~F~g~s~~~~~~~~~~--~~~~~~~i~~~frT~~~~GlLl~~~~~~~~~~~~~~~~~l~l~~G~l~~~~~~g~~~~~  729 (834)
                      ..+.|.|+||++|+.....  .......|+|+|||.+++|+|||.+...   ....||++|+|.+|+|++++++|++...
T Consensus        10 ~~~~F~g~syl~~~~~~~~~~~~~~~~~isl~frT~~~~GlLl~~~~~~---~~~~d~l~l~L~~G~l~~~~~~G~g~~~   86 (189)
T 3pve_A           10 FLADFNGFSYLELKGLHTFERDLGEKMALEMVFLARGPSGLLLYNGQKT---DGKGDFVSLALHNRHLEFRYDLGKGAAI   86 (189)
T ss_dssp             CCEEEESSCEEEECCGGGC-------CEEEEEEEESSSCEEEEEEESCC----CCSCEEEEEEETTEEEEEEESSSCEEE
T ss_pred             eeeEECCCceEEEcCcccccccccceEEEEEEEEeCCCCEEEEEecCCC---CCCCCeEEEEEECCEEEEEEecCCCCEE
Confidence            4679999999999865421  1135789999999999999999998631   1236999999999999999999999888


Q ss_pred             EEeCCceecCCCcEEEEEEEECCEEEEEEcCeeeecccCCCCccceecCCceEEcCcCCCCCC-CCCccCCCceEEEEEE
Q psy9228         730 IKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPNMDLM-TGGRYVHPMSGLMMNI  808 (834)
Q Consensus       730 l~~s~~~~nDg~wH~V~i~r~~~~~~l~VD~~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~~~-~~~~~~~~F~GCi~~v  808 (834)
                      +. +..+++||+||+|.+.|.++.++|+||+........++....++...+|||||+|..... .......+|+|||++|
T Consensus        87 l~-s~~~l~Dg~WH~V~v~r~~~~~~L~VD~~~~~~~~~~~~~~~l~~~~~lyvGG~p~~~~~~~~~~~~~~F~GCi~~v  165 (189)
T 3pve_A           87 IR-SKEPIALGTWVRVFLERNGRKGALQVGDGPRVLGESPVPHTMLNLKEPLYVGGAPDFSKLARGAAVASGFDGAIQLV  165 (189)
T ss_dssp             EE-CSSCCCTTSEEEEEEEEETTEEEEEETTSCCEEEECCSSCCCCCCCSCEEESCCSCGGGSCGGGCCCSBCEEEEEEE
T ss_pred             EE-cCcccCCCCEEEEEEEEeCCEEEEEECCceeEeEEcCCCcceecCCCCEEECCcCchhhcccccccCCCCcEEceEE
Confidence            87 889999999999999999999999999987665566666677888899999999976321 1123567899999999


Q ss_pred             EECCceecccCCCCCCCccccc
Q psy9228         809 HIQNKHISNIGSSASSGLHVMP  830 (834)
Q Consensus       809 ~in~~~~~~l~~~a~~~~nv~~  830 (834)
                      +||++.+ ++...+.+++||..
T Consensus       166 ~ing~~l-~~~~~~~~~~~v~~  186 (189)
T 3pve_A          166 SLRGHQL-LTQEHVLRAVDVAP  186 (189)
T ss_dssp             EETTEEC-CBGGGEEEEESCEE
T ss_pred             EECCEEc-cChhhccccccccc
Confidence            9999855 77777888888865

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}

Probab=99.95  E-value=4.1e-26  Score=252.76  Aligned_cols=309  Identities=18%  Similarity=0.290  Sum_probs=203.8

Q ss_pred             ccCCC-CcceEEcCCCCCcceEEEEEEEcccCCCceEEEeecccCCCCCCeEEEEEecCeEEEEEecCCCccee---cCC
Q psy9228         219 QPAFK-HGSYLAYPTPKTMRKFKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKHMEFRFDTGSATPLY---SND  294 (834)
Q Consensus       219 ~~~F~-g~~y~~~~~~~~~~~~~i~l~f~t~~~~~glll~~~~~~~~~~d~~~l~l~~G~v~~~~~~g~~~~~~---~~~  294 (834)
                      .++|. +.||+.++........+|+|.|||. .++|+|||.+..   ..||++|+|.+|++++++++|++....   +..
T Consensus         7 ~v~F~~~~Syl~~p~~~~~~~~~is~~frT~-~~~GlLly~~~~---~~dfi~l~L~~G~l~~~~~~G~g~~~~~~~s~~   82 (410)
T 3asi_A            7 PVTFKTKSSYVALATLQAYTSMHLFFQFKTT-SLDGLILYNSGD---GNDFIVVELVKGYLHYVFDLGNGANLIKGSSNK   82 (410)
T ss_dssp             CEEECSTTCEEEESCCCCSSCEEEEEEEECS-CSCEEEEEEEBS---TTCEEEEEEETTEEEEEEESSSCEEEEECCCSS
T ss_pred             ccEeCCCCeeEEeCCCCCCceEEEEEEEEeC-CCCeEEEEeCCC---CCCEEEEEEECCEEEEEEECCCCcEEEEeccCc
Confidence            56885 6899999987766788999999999 699999998642   369999999999999999999986432   233


Q ss_pred             CCCcccccce-eccCCCe-EEEEecCCCCCCceeeeeecCCCceeccccccccccccccccccCCCceEEEEeCC-----
Q psy9228         295 APAFNPVSTK-EAPYGSK-ITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIKNSDAGMYVCKVSN-----  367 (834)
Q Consensus       295 ~~~~~~~~~~-~~~~~~~-v~l~vd~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~C~~~~-----  367 (834)
                      ......||.+ ..|.+++ +.|+||........-..........+++||.|......+........++.+|+..+     
T Consensus        83 ~vnDg~WH~V~v~r~~~~~~~l~VD~~~~~~~~~~~~~l~~~~~lyvGG~p~~~~~~~~~~~~~~~~F~GCi~~l~ing~  162 (410)
T 3asi_A           83 PLNDNQWHNVMISRDTSNLHTVKIDTKITTQITAGARNLDLKSDLYIGGVAKETYKSLPKLVHAKEGFQGCLASVDLNGR  162 (410)
T ss_dssp             CSCSSSCEEEEEEECTTCEEEEEETTEEEEEECTTCCCCCBCSCEEESCCCGGGGGGSCTTCCCSSBCCEEEEEEESSSC
T ss_pred             EeCCCCeEEEEEEEcCCceEEEEECCEeceeccCCccceecCCceEECccccchhhhhhhhcccccCchhheeheeeCCc
Confidence            4455556655 5566655 78888864211100000011123467888887542211111112223445554321     


Q ss_pred             -----------------------------------------CCceeEeeE-Eeee--e--ccccccCCCccccccc--CC
Q psy9228         368 -----------------------------------------KDMTVEIPS-ILLV--T--DSVPLFTQKPLSYLAL--PT  399 (834)
Q Consensus       368 -----------------------------------------~~~~~~~~~-~~~~--~--~~~~~f~~~~~s~l~~--~~  399 (834)
                                                               ....+.|+. ...-  +  ...+.++....+|+.+  +.
T Consensus       163 ~~dl~~~~~~~~~~v~~gC~~~~~~C~~~pC~n~g~C~~~~~~~~C~C~~~~~~G~~C~~~~~~~~f~~~~~~~~~~~~~  242 (410)
T 3asi_A          163 LPDLISDALFCNGQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQITYKWPP  242 (410)
T ss_dssp             CCCTTTTCSEEESSEEESCCCCSSCCCTTSSSTTCEEEECSSSEEEECTTTSEESTTSCEECCEEEEEEEEEEEEEECCT
T ss_pred             ccCchhhhhccCCccCCCCCCCCCCcccccCCCCCEecCCCCCceEeccCCcccCCCCCCCcccccccCCCceEEEecCC
Confidence                                                     111111110 0000  0  0001122223456554  22


Q ss_pred             c-cccceeEEEEEEEeeCCCCeeEEEeccCCccccCCCCCeEEEEEECcEEEEEEeccc--EEEEe-eeeecCCCeEEEE
Q psy9228         400 L-TDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVGL--VVLRS-KVTLVPHEWVVVT  475 (834)
Q Consensus       400 ~-~~~~~~~~i~~~frt~~~~GlLl~~~~~~~~~~~~~~d~~~l~L~~G~l~~~~~~G~--~~i~s-~~~~~dg~wH~V~  475 (834)
                      . ........++|.|||.+++|+|||....     ....+|++|+|.+|++++++++|.  ..+.+ ...++||+||+|.
T Consensus       243 ~~~~~~~~~~i~l~frT~~~~GlLl~~~~~-----~~~~~~l~l~L~~G~l~~~~~~g~~~~~~~~~~~~l~DG~wH~V~  317 (410)
T 3asi_A          243 NDRPSTRADRLAIGFSTVQKEAVLVRVDSS-----SGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAIINDGKYHVVR  317 (410)
T ss_dssp             TCCCCBSEEEEEEEEECCCSEEEEEEEEEC-----TTCCCEEEEEEETTEEEEEEESSSSCEEEECCSCCCCSSSCEEEE
T ss_pred             CCCccceeeEEEEEEEeCCCCEEEEEEecC-----CCCCceEEEEEeCCEEEEEEECCCCceEEecCccCcCCCCeEEEE
Confidence            1 1122356899999999999999998642     134799999999999999999873  55554 3789999999999


Q ss_pred             EEEECCeEEEEECCeeeeeeecCCCccccccCCCceeeccccCCCcccCcCcccccCceeEEeeeEEcCeee
Q psy9228         476 IIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSEL  547 (834)
Q Consensus       476 v~~~~~~~~l~VD~~~~~~~~~~g~~~~~l~~~~~l~iGG~~~~~~~~~~~~~~~~gF~GCi~~v~ing~~~  547 (834)
                      +.|.++.++|+||+........++.....++....+||||+|..           .+|.|||+++.+|+..+
T Consensus       318 v~r~~~~~~L~VD~~~~~~~~~~g~~~~~~~~~~~lylGG~p~~-----------~~F~GCi~~v~ing~~~  378 (410)
T 3asi_A          318 FTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKEQG-----------QPFQGQLSGLYYNGLKV  378 (410)
T ss_dssp             EEEETTEEEEEETTSCCEEECCSSCCCCCBCCEEEEEESSTTTT-----------CCCCEEEEEEEETTBCH
T ss_pred             EEEECCEEEEEECCcceecccCCCccceeeeccceEEECCcccC-----------CCCEEEEEEEEECCHHH
Confidence            99999999999999776655444431334566778999999872           68999999999999863

>2r16_A Neurexin-1-alpha; beta-sandwich, cell adhesion, splicing; 1.04A {Bos taurus}

Probab=99.94  E-value=4.4e-26  Score=221.59  Aligned_cols=160  Identities=16%  Similarity=0.237  Sum_probs=131.7

Q ss_pred             eeeEEcCCceeeechhhhhhccCcceEEEEEEeCCCCeeEEecCCCCCCCCCCcceEEEEEECCEEEEEEEcCCcEEEEE
Q psy9228         652 SEVHFLGEGYVELKKELIEERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIK  731 (834)
Q Consensus       652 ~~~~F~g~s~~~~~~~~~~~~~~~~~i~~~frT~~~~GlLl~~~~~~~~~~~~~~~~~l~l~~G~l~~~~~~g~~~~~l~  731 (834)
                      .++.|+|+||+.+...... .....+|+|+|||.+++|+|||.+...     ..||++|+|.+|+|++++++|++...+.
T Consensus         6 ~~~~F~G~sy~~~~~~~~~-~~~~~~isl~FrT~~~~GlLl~~~~~~-----~~d~l~L~L~~G~l~~~~~~G~~~~~~~   79 (182)
T 2r16_A            6 TVLSYDGSMFMKIQLPVVM-HTEAEDVSLRFRSQRAYGILMATTSRD-----SADTLRLELDAGRVKLTVNLGKGPETLF   79 (182)
T ss_dssp             CEEEEESSCCEEEEEEEEE-EESEEEEEEEEECSCSSEEEEEEECSS-----SCCEEEEEEETTEEEEEEESSSCCEEEE
T ss_pred             ccEEECCCceEEEECCCcC-CccceEEEEEEEECCCCEEEEEeCCCC-----CCCEEEEEEECCEEEEEEECCCCceEEE
Confidence            4689999999887532221 246789999999999999999997532     3699999999999999999999888887


Q ss_pred             eCCceecCCCcEEEEEEEECCEEEEEEcCeeeecccCCCCccceecCCceEEcCcCCCCCCCCCccCCCceEEEEEEEEC
Q psy9228         732 FSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNIHIQ  811 (834)
Q Consensus       732 ~s~~~~nDg~wH~V~i~r~~~~~~l~VD~~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~~~~~~~~~~~F~GCi~~v~in  811 (834)
                       +..++|||+||+|.|.|.++.++|+||+........++....++.. ++||||+|....  ......+|+|||++|+||
T Consensus        80 -~~~~lnDg~WH~V~v~r~~~~~~L~VD~~~~~~~~~~g~~~~l~~~-~l~iGG~~~~~~--~~~~~~~F~GCi~~l~in  155 (182)
T 2r16_A           80 -AGYNLNDNEWHTVRVVRRGKSLKLTVDDQQAMTGQMAGDHTRLEFH-NIETGIITERRY--LSSVPSNFIGHLQSLTFN  155 (182)
T ss_dssp             -ECSSCCSSSCEEEEEEEETTEEEEEETTCCEEEEECCSSCCCEEEE-EEEESSCCCCTT--CSSCCCCCEEEEEEEEET
T ss_pred             -cCcccCCCCeEEEEEEEECCEEEEEECCceeEeEECCCCccEEecc-CeEECCcccccc--cCCCCCCCEEEEeEEEEC
Confidence             7889999999999999999999999999887666666666677776 799999987522  123457899999999999


Q ss_pred             CceecccCCC
Q psy9228         812 NKHISNIGSS  821 (834)
Q Consensus       812 ~~~~~~l~~~  821 (834)
                      +..++++...
T Consensus       156 ~~~~~~~~~~  165 (182)
T 2r16_A          156 GMAYIDLCKN  165 (182)
T ss_dssp             TEEHHHHHHH
T ss_pred             CEEhHHHHhc
Confidence            9877776543

>1d2s_A SHBG, sex hormone-binding globulin; steroid transport, laminin G-like domain, jellyroll, androgen binding protein (ABP); HET: DHT; 1.55A {Homo sapiens} SCOP: b.29.1.4 PDB: 1kdk_A* 1kdm_A*

Probab=99.94  E-value=5.7e-26  Score=217.84  Aligned_cols=160  Identities=17%  Similarity=0.109  Sum_probs=124.9

Q ss_pred             EEcCCc--eeeechhhhhhccCcceEEEEEEeCCCCeeEEecCCCCCCCCCCcceEEEEEECCEEEEEEEcCCcEEEEEe
Q psy9228         655 HFLGEG--YVELKKELIEERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKF  732 (834)
Q Consensus       655 ~F~g~s--~~~~~~~~~~~~~~~~~i~~~frT~~~~GlLl~~~~~~~~~~~~~~~~~l~l~~G~l~~~~~~g~~~~~l~~  732 (834)
                      .|.|.+  |+.|+...    .....|+|+|||.+++|+|||++...     +.||++|+|++|+|+++++.|++...+. 
T Consensus         9 ~F~g~s~~~l~f~~~~----~~~~~is~~FrT~~~~GlLly~~~~~-----~~df~~l~L~~G~l~~~~~~g~~~~~~~-   78 (170)
T 1d2s_A            9 GPGQEPIAVMTFDLTK----ITKTSSSFEVRTWDPEGVIFYGDTNP-----KDDWFMLGLRDGRPEIQLHNHWAQLTVG-   78 (170)
T ss_dssp             TTCCSCSEEEEEEGGG----CCCCEEEEEEEESCSSEEEEEEEEET-----TTEEEEEEEETTEEEEEEESSSCEEEEE-
T ss_pred             CCCCCceEEEEecCCC----CCceEEEEEEEeCCCCEEEEEecCCC-----CCCEEEEEEeCCEEEEEEECCCceEEEe-
Confidence            466655  56665432    25679999999999999999997632     3699999999999999999998877775 


Q ss_pred             CCceecCCCcEEEEEEEECCEEEEEEcCeeeecccCCCCccceecCCceEEcCcCCCCCCCCCccCCCceEEEEEEEECC
Q psy9228         733 SKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNIHIQN  812 (834)
Q Consensus       733 s~~~~nDg~wH~V~i~r~~~~~~l~VD~~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~~~~~~~~~~~F~GCi~~v~in~  812 (834)
                      +..++|||+||+|.+.|.++.++|.||+...........   ++. +++||||+|............+|+||||+|+||+
T Consensus        79 s~~~vnDG~WH~V~v~~~~~~~~L~VD~~~~~~~~~~~~---l~~-~~lylGG~p~~~~~~~~~~~~~F~GCi~~l~in~  154 (170)
T 1d2s_A           79 AGPRLDDGRWHQVEVKMEGDSVLLEVDGEEVLRLRQVSG---HPI-MRIALGGLLFPASNLRLPLVPALDGCLRRDSWLD  154 (170)
T ss_dssp             CSCCCCSSSCEEEEEEEETTEEEEEETTEEEEEETTCCC---CCE-EEEEESSCSSCGGGSSSCCCCCCCEEEEEEEESC
T ss_pred             CCCccCCCCCEEEEEEEeCCEEEEEECCeeeeeeccCCC---ccc-ccEEEECcccchhhcccCCCCCeeeEeEEeEECC
Confidence            788999999999999999999999999988765433222   333 6899999997533222345788999999999999


Q ss_pred             ceecccCCCCCCCcccccc
Q psy9228         813 KHISNIGSSASSGLHVMPW  831 (834)
Q Consensus       813 ~~~~~l~~~a~~~~nv~~c  831 (834)
                      ..+. +...|.  -+|.+|
T Consensus       155 ~~~~-l~~~~~--~~~~~c  170 (170)
T 1d2s_A          155 KQAE-ISASAP--TSLRSC  170 (170)
T ss_dssp             GGGE-EEEECS--SCCCBC
T ss_pred             ccce-eeeccc--cCCCCC
Confidence            8554 444454  488887

>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein, vitamin K-dependent protein, AXL/SKY/MER ligand, laminin G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4 b.29.1.4 PDB: 2c5d_A*

Probab=99.94  E-value=2.5e-26  Score=255.16  Aligned_cols=212  Identities=18%  Similarity=0.176  Sum_probs=149.5

Q ss_pred             eeeecCCCCCCCCCccCccCCCCCCccCCCceeeecCCCcEEcCCCCCCCCCcccccccceeeEEcCCceeeechhhhhh
Q psy9228         592 YNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDSYECLCSLGYAPPNCAKRVSIGSEVHFLGEGYVELKKELIEE  671 (834)
Q Consensus       592 ~~C~C~~G~~G~~Ce~~~~~C~~~~pC~ngg~C~~~~~~~~C~C~~g~~G~~Ce~~~~~~~~~~F~g~s~~~~~~~~~~~  671 (834)
                      ..|.| +|++|..|+.+     .. +|+++++|+.....   .|...         .  -.+..|.|.+|+.+.....  
T Consensus         2 ~~C~C-~~~~g~~~~~~-----~~-~C~~~~~C~p~~~~---~~~~~---------~--~~~~~F~g~~~~~~~f~~~--   58 (422)
T 1h30_A            2 PLAHC-DGRGGLKLSQD-----MD-TCEDILPCVPFSVA---KSVKS---------L--YLGRMFSGTPVIRLRFKRL--   58 (422)
T ss_dssp             ---CC-CGGGTEEEETT-----TT-EEEECCCSSCBCCC---EETTE---------E--ECCC-----CCEEEECCBS--
T ss_pred             CeeEc-CCCCccccccc-----cC-cCCCCCccCCcccc---cCccc---------c--eeeeEECCCceEEEEccCC--
Confidence            36999 79999887654     44 78888888764422   11111         0  1256899988887753222  


Q ss_pred             ccCcceEEEEEEeCCCCeeEEecCCCCCCCCCCcceEEEEEECCEEEEEEEcCCcEEEEEeCCceecCCCcEEEEEEEEC
Q psy9228         672 RRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVTRIN  751 (834)
Q Consensus       672 ~~~~~~i~~~frT~~~~GlLl~~~~~~~~~~~~~~~~~l~l~~G~l~~~~~~g~~~~~l~~s~~~~nDg~wH~V~i~r~~  751 (834)
                      ......|+|+|||.+++|||||.+...     ..||++|+|++|+|++++++|++...+. +..++|||+||+|+|.|.+
T Consensus        59 ~~~~~~is~~FrT~~~~GlLly~~~~~-----~~df~~l~L~~G~l~~~~~~g~~~~~~~-~~~~~nDg~WH~V~v~r~~  132 (422)
T 1h30_A           59 QPTRLVAEFDFRTFDPEGILLFAGGHQ-----DSTWIVLALRAGRLELQLRYNGVGRVTS-SGPVINHGMWQTISVEELA  132 (422)
T ss_dssp             SCCCCEEEEEEEECCSSEEEEEEESCT-----TSEEEEEEEETTEEEEEEEETTEEEEEE-EEEECCSSCCEEEEEEECS
T ss_pred             CCCceEEEEEEEeCCCCeEEEEECCCC-----CCcEEEEEEECCEEEEEEECCCCcEEEe-cCceecCCCCEEEEEEEcC
Confidence            146789999999999999999998642     3699999999999999999999876665 7789999999999999999


Q ss_pred             CEEEEEEcCeeeecccCCCCcccee---cCCceEEcCcCCCCCCCCCccCCCceEEEEEEEECCceecccCCCCCCCccc
Q psy9228         752 KFGSLEVDSVIVGKGESPGSQDVIN---TRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNIHIQNKHISNIGSSASSGLHV  828 (834)
Q Consensus       752 ~~~~l~VD~~~~~~~~~~~~~~~l~---~~~~lyiGG~p~~~~~~~~~~~~~F~GCi~~v~in~~~~~~l~~~a~~~~nv  828 (834)
                      +.++|.||+..+.....++....++   ...+|||||+|............+|+|||++|+||+..+.++... +....+
T Consensus       133 ~~~~L~VD~~~~~~~~~~g~~~~l~~~~~~~~lyvGG~p~~~~~~~~~~~~~F~GCi~~v~i~~~~~~~l~~~-~~~~~~  211 (422)
T 1h30_A          133 RNLVIKVNRDAVMKIAVAGDLFQPERGLYHLNLTVGGIPFHEKDLVQPINPRLDGCMRSWNWLNGEDTTIQET-VKVNTR  211 (422)
T ss_dssp             SEEEEEETTEEEEEEECCSCSSEEETTEEECEEEESSCSSCGGGSSSCCCCCCCEEEEEEEEC---------C-CCCCGG
T ss_pred             CEEEEEECCeeeEEeecCCcccccccccccceEEEecCcccccccccccCCCCeEEEEEeEECCccccchhhh-hhcccC
Confidence            9999999999877665666656666   568999999997643322245678999999999977656566553 455677


Q ss_pred             ccccC
Q psy9228         829 MPWIR  833 (834)
Q Consensus       829 ~~c~~  833 (834)
                      .+|+.
T Consensus       212 ~~C~~  216 (422)
T 1h30_A          212 MQCFS  216 (422)
T ss_dssp             GSEES
T ss_pred             CCCCC
Confidence            88864

>2h0b_A Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A {Bos taurus}

Probab=99.93  E-value=1.9e-25  Score=218.34  Aligned_cols=156  Identities=21%  Similarity=0.367  Sum_probs=127.7

Q ss_pred             eeeEEcCCceeeechhhhhhccCcceEEEEEEeCCCCeeEEecCCCCCCCCCCcceEEEEEECCEEEEEEEcCCcEEEE-
Q psy9228         652 SEVHFLGEGYVELKKELIEERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTI-  730 (834)
Q Consensus       652 ~~~~F~g~s~~~~~~~~~~~~~~~~~i~~~frT~~~~GlLl~~~~~~~~~~~~~~~~~l~l~~G~l~~~~~~g~~~~~l-  730 (834)
                      ..+.|.|+||+.|+...........+|+|+|||.+++|+|||.+..       .||++|+|++|+|++++++|++.... 
T Consensus         6 ~~~~F~G~sy~~~~~~~~~~~~~~~~isl~frT~~~~GlLl~~g~~-------~d~l~l~L~~G~l~~~~~~G~g~~~~~   78 (184)
T 2h0b_A            6 YIATFKGSEYFCYDLSQNPIQSSSDEITLSFKTLQRNGLMLHTGKS-------ADYVNLALKNGAVSLVINLGSGAFEAL   78 (184)
T ss_dssp             CEEEEESSEEEEEECSSSCEEESEEEEEEEEEESCSCEEEEEECCT-------TEEEEEEEETTEEEEEEEESSCEEEEE
T ss_pred             ceeEECCceEEEEccccCccccCccEEEEEEEeCCCCEEEEEeCCC-------CCEEEEEEECCEEEEEEECCCCeEEEE
Confidence            4689999999999754221123568999999999999999998642       69999999999999999999987542 


Q ss_pred             E-eCCceecCCCcEEEEEEEECCEEEEEEcCeeeecccCCCCccceecCCceEEcCcCCCCCCCCCccCCCceEEEEEEE
Q psy9228         731 K-FSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNIH  809 (834)
Q Consensus       731 ~-~s~~~~nDg~wH~V~i~r~~~~~~l~VD~~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~~~~~~~~~~~F~GCi~~v~  809 (834)
                      . .+..++|||+||+|.+.|.++.++|.||+........++....++...++||||+|.....+......+|+|||++|+
T Consensus        79 ~~~~~~~l~Dg~WH~V~v~r~~~~~~L~VD~~~~~~~~~~~~~~~l~~~~~l~lGG~p~~~~~~~~~~~~~F~GCi~~v~  158 (184)
T 2h0b_A           79 VEPVNGKFNDNAWHDVKVTRNLRQVTISVDGILTTTGYTQEDYTMLGSDDFFYVGGSPSTADLPGSPVSNNFMGCLKEVV  158 (184)
T ss_dssp             ECCSSSCSSSSSCEEEEEEEETTEEEEEETTTEEEEEECSTTCCCEEECSEEEESCCTTGGGSTTCSCCCBCEEEEEEEE
T ss_pred             EecCCcccCCCCeEEEEEEEeCCEEEEEEcCceeeeeECCCCceeccCCCCEEECCCCccccCcCCcccCCCEEEeeEEE
Confidence            2 356789999999999999999999999998776655556556678888999999998644344456788999999999


Q ss_pred             ECCce
Q psy9228         810 IQNKH  814 (834)
Q Consensus       810 in~~~  814 (834)
                      ||+..
T Consensus       159 in~~~  163 (184)
T 2h0b_A          159 YKNND  163 (184)
T ss_dssp             EEESS
T ss_pred             ECCEE
Confidence            99875

>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium, cell adhesion, EGF-like domain, glycoprotein, membrane, metal- binding; 1.70A {Mus musculus} PDB: 2vh8_C 2xb6_C* 2wqz_C* 1c4r_A 3bop_A 3mw4_A*

Probab=99.93  E-value=2e-25  Score=216.09  Aligned_cols=159  Identities=23%  Similarity=0.330  Sum_probs=126.6

Q ss_pred             eeeEEcC-Cceeeechhhh-hhccCcceEEEEEEeCCCCeeEEecCCCCCCCCCCcceEEEEEECCEEEEEEEcCCcEEE
Q psy9228         652 SEVHFLG-EGYVELKKELI-EERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVT  729 (834)
Q Consensus       652 ~~~~F~g-~s~~~~~~~~~-~~~~~~~~i~~~frT~~~~GlLl~~~~~~~~~~~~~~~~~l~l~~G~l~~~~~~g~~~~~  729 (834)
                      .++.|.+ +||+.|..... ........|+|+|||.+++|+|||+....    ...||++|+|++|+|++++++|++...
T Consensus         5 t~~~F~~~~s~l~y~~~~~~~~~~~~~~isl~FrT~~~~GlLl~~~~~~----~~~dfi~l~L~~G~l~~~~~~G~~~~~   80 (178)
T 3bod_A            5 STYIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSS----GLGDYLELHIHQGKIGVKFNVGTDDIA   80 (178)
T ss_dssp             CEEEEEEEEEEEEEECCTTSCCCBSEEEEEEEEECCCSSEEEEEEEESS----SSCCEEEEEEETTEEEEEEESSSCCEE
T ss_pred             eEEEECCCCcEEEEECCCcCCCCccccEEEEEEEECCCCEEEEEEcCCC----CCCCEEEEEEECCEEEEEEECCCCceE
Confidence            4688964 79998853321 11235679999999999999999964221    236999999999999999999998887


Q ss_pred             EEeCCceecCCCcEEEEEEEECCEEEEEEcCeeeecccCCCCc-cceecCCceEEcCcCCCCCCCCCccCCCceEEEEEE
Q psy9228         730 IKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQ-DVINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNI  808 (834)
Q Consensus       730 l~~s~~~~nDg~wH~V~i~r~~~~~~l~VD~~~~~~~~~~~~~-~~l~~~~~lyiGG~p~~~~~~~~~~~~~F~GCi~~v  808 (834)
                      +..+..++|||+||+|.+.|.++.++|+||+........++.. ..++...+|||||+|.         ..+|+|||++|
T Consensus        81 ~~~~~~~vnDg~WH~V~v~r~~~~~~L~VD~~~~~~~~~~~~~~~~l~~~~~lylGG~p~---------~~~F~GCi~~v  151 (178)
T 3bod_A           81 IEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKEQ---------GQPFQGQLSGL  151 (178)
T ss_dssp             EECCSSCCCSSSCEEEEEEEETTEEEEEETTSCCEEECCCSCCCCCBCCEEEEEESCCTT---------SCBCCEEEEEE
T ss_pred             EecCCcCccCCCeEEEEEEEeCCEEEEEEeCCceeeeecCCCcceEEeCCCcEEEecccC---------CCCCEEEEEEE
Confidence            7756678999999999999999999999999876544344333 4577778999999986         26899999999


Q ss_pred             EECCceecccCCCCC
Q psy9228         809 HIQNKHISNIGSSAS  823 (834)
Q Consensus       809 ~in~~~~~~l~~~a~  823 (834)
                      ++|+..++++.....
T Consensus       152 ~in~~~vl~l~~~~~  166 (178)
T 3bod_A          152 YYNGLKVLNMAAEND  166 (178)
T ss_dssp             EETTEEHHHHHHTTC
T ss_pred             EECCEehHhHhhcCC
Confidence            999987788876543

>1f5f_A SHBG, sex hormone-binding globulin; jellyroll, signaling protein; HET: DHT; 1.70A {Homo sapiens} SCOP: b.29.1.4 PDB: 1lhw_A* 1lho_A* 1lhn_A* 1lhv_A* 1lhu_A*

Probab=99.93  E-value=6.6e-25  Score=217.88  Aligned_cols=168  Identities=17%  Similarity=0.131  Sum_probs=126.7

Q ss_pred             eeeEEcCC------ceeeechhhhhhccCcceEEEEEEeCCCCeeEEecCCCCCCCCCCcceEEEEEECCEEEEEEEcCC
Q psy9228         652 SEVHFLGE------GYVELKKELIEERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGD  725 (834)
Q Consensus       652 ~~~~F~g~------s~~~~~~~~~~~~~~~~~i~~~frT~~~~GlLl~~~~~~~~~~~~~~~~~l~l~~G~l~~~~~~g~  725 (834)
                      .++.|.+.      +|+.|+...    ....+|+|+|||++++|||||++...     +.||++|+|++|+|++++++|+
T Consensus        14 ~~~~F~~~~~~~~~~y~~~~~~~----~~~~~is~~frT~~~~GlLly~~~~~-----~~d~~~l~L~~G~l~~~~~~g~   84 (205)
T 1f5f_A           14 PAVHLSNGPGQEPIAVMTFDLTK----ITKTSSSFEVRTWDPEGVIFYGDTNP-----KDDWFMLGLRDGRPEIQLHNHW   84 (205)
T ss_dssp             CCEESCCTTCCSCSEEEEEEGGG----CCCCEEEEEEEESCSSEEEEEEEEET-----TTEEEEEEEETTEEEEEEESSS
T ss_pred             ccEEeccCCCCcEeEEEEECCCC----CCceEEEEEEEeCCCCEEEEEeCCCC-----CCCEEEEEEECCEEEEEEECCC
Confidence            35778752      445555332    24589999999999999999997642     2599999999999999999999


Q ss_pred             cEEEEEeCCceecCCCcEEEEEEEECCEEEEEEcCeeeecccC---CCCccceecCCceEEcCcCCCCCCCCCccCCCce
Q psy9228         726 GVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGES---PGSQDVINTRGNIYLGGTPNMDLMTGGRYVHPMS  802 (834)
Q Consensus       726 ~~~~l~~s~~~~nDg~wH~V~i~r~~~~~~l~VD~~~~~~~~~---~~~~~~l~~~~~lyiGG~p~~~~~~~~~~~~~F~  802 (834)
                      +...+. +..+||||+||+|.|.|.++.++|.||+........   +.....+ ..++|||||+|............+|+
T Consensus        85 ~~~~~~-s~~~vnDG~WH~V~v~r~~~~~~L~VD~~~~~~~~~~~~~~~~~~~-~~~~lyiGG~p~~~~~~~~~~~~~F~  162 (205)
T 1f5f_A           85 AQLTVG-AGPRLDDGRWHQVEVKMEGDSVLLEVDGEEVLRLRQVSGPLTSKRH-PIMRIALGGLLFPASNLRLPLVPALD  162 (205)
T ss_dssp             CEEEEE-CSCCCCSSSCEEEEEEEETTEEEEEETTEEEEEECSCCCCC----C-CEEEEEESSCSSCGGGSSSCCCCCCC
T ss_pred             ceEEEe-cCCccCCCCCEEEEEEEeCCEEEEEECCeeeeeeeccCCCcccccC-CCceEEEeCccCccccccccCCCCee
Confidence            887775 788999999999999999999999999988664321   1111222 23689999999753222234578899


Q ss_pred             EEEEEEEECCceecccCCCCCCCcccccccC
Q psy9228         803 GLMMNIHIQNKHISNIGSSASSGLHVMPWIR  833 (834)
Q Consensus       803 GCi~~v~in~~~~~~l~~~a~~~~nv~~c~~  833 (834)
                      |||++|++|+. .++|...+  ..+|.+|..
T Consensus       163 GCi~~l~i~~~-~~~l~~~~--~~~v~~C~~  190 (205)
T 1f5f_A          163 GCLRRDSWLDK-QAEISASA--PTSLRSCDV  190 (205)
T ss_dssp             EEEEEEECSCG-GGEEEEEC--SSCCCBC--
T ss_pred             EEeeeeEECCe-eccccccC--cccCCCCCC
Confidence            99999999887 46776643  389999964

>2r1d_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 2.60A {Rattus norvegicus} SCOP: b.29.1.4 PDB: 3biw_E*

Probab=99.92  E-value=1.4e-24  Score=217.25  Aligned_cols=154  Identities=21%  Similarity=0.298  Sum_probs=122.9

Q ss_pred             eeEEcCCceeeechhhh-hhccCcceEEEEEEeCCCCeeEEecCCCCCCCCCCcceEEEEEECCEEEEEEEcCCcEEEEE
Q psy9228         653 EVHFLGEGYVELKKELI-EERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIK  731 (834)
Q Consensus       653 ~~~F~g~s~~~~~~~~~-~~~~~~~~i~~~frT~~~~GlLl~~~~~~~~~~~~~~~~~l~l~~G~l~~~~~~g~~~~~l~  731 (834)
                      .+.|.| +|+.|..... ........|+|+|||.+++|+|||+....    ...||++|+|++|+|++++++|++...+.
T Consensus        42 ~f~~~g-s~i~y~~~~~~~~~~~~~~isl~FrT~~~~GlLl~~~~~~----~~~dfi~L~L~~G~l~~~~~~G~~~~~~~  116 (226)
T 2r1d_A           42 IFSKGG-GQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSS----GLGDYLELHIHQGKIGVKFNVGTDDIAIE  116 (226)
T ss_dssp             EEEEEE-EEEEEECCGGGCCCBSEEEEEEEEECCCSSEEEEEEEECT----TCCCEEEEEEETTEEEEEEESSSCEEEEE
T ss_pred             EEecCC-cEEEEECCccccccccccEEEEEEEeCCCCEEEEEecCCC----CCCCEEEEEEECCEEEEEEECCCCcEEEE
Confidence            467788 9998853221 11224568999999999999999975321    23699999999999999999999998887


Q ss_pred             eCCceecCCCcEEEEEEEECCEEEEEEcCeeeec-ccCCCCccceecCCceEEcCcCCCCCCCCCccCCCceEEEEEEEE
Q psy9228         732 FSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGK-GESPGSQDVINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNIHI  810 (834)
Q Consensus       732 ~s~~~~nDg~wH~V~i~r~~~~~~l~VD~~~~~~-~~~~~~~~~l~~~~~lyiGG~p~~~~~~~~~~~~~F~GCi~~v~i  810 (834)
                      .+..+||||+||+|+|.|.++.++|+||+..... ...++....++...+|||||+|..         .+|+|||++|++
T Consensus       117 ~~~~~vnDG~WH~V~v~r~~~~~~L~VD~~~~~~~~~~~~~~~~l~~~~~lylGG~p~~---------~~F~GCi~~v~i  187 (226)
T 2r1d_A          117 ESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKEQG---------QPFQGQLSGLYY  187 (226)
T ss_dssp             CCSSCCCSSSCEEEEEEEETTEEEEEETTSCCEEECCSSCCCCCBCSEEEEEESSTTTT---------CCCCEEEEEEEE
T ss_pred             eCCeEecCCCCEEEEEEEeCCEEEEEEcCccceEEecCCCcceeccCCCeEEEccccCC---------CCCeEEEeeEEE
Confidence            4557899999999999999999999999976432 233444556787789999999852         689999999999


Q ss_pred             CCceecccCC
Q psy9228         811 QNKHISNIGS  820 (834)
Q Consensus       811 n~~~~~~l~~  820 (834)
                      |+..++++..
T Consensus       188 ng~~vl~la~  197 (226)
T 2r1d_A          188 NGLKVLNMAA  197 (226)
T ss_dssp             TTBCHHHHHH
T ss_pred             CCEeHHhhhh
Confidence            9987777754

>2r1b_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 1.72A {Rattus norvegicus} PDB: 3mw2_A* 3b3q_E* 3mw3_A*

Probab=99.92  E-value=1e-24  Score=217.90  Aligned_cols=156  Identities=23%  Similarity=0.343  Sum_probs=119.4

Q ss_pred             eeEEc-CCceeeechhh-hhhccCcceEEEEEEeCCCCeeEEecCCCCCCCCCCcceEEEEEECCEEEEEEEcCCcEEEE
Q psy9228         653 EVHFL-GEGYVELKKEL-IEERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTI  730 (834)
Q Consensus       653 ~~~F~-g~s~~~~~~~~-~~~~~~~~~i~~~frT~~~~GlLl~~~~~~~~~~~~~~~~~l~l~~G~l~~~~~~g~~~~~l  730 (834)
                      .+.|. +.||+.|.... .........|+|+|||.+++|||||.....    ...|||+|+|++|+|++++++|++...+
T Consensus        12 ~~~F~~g~s~l~y~~~~~~~~~~~~~~isl~FrT~~~~GlLly~~~~~----~~~dfi~LeL~~G~l~~~~~~G~~~~~~   87 (220)
T 2r1b_A           12 TYIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSS----GLGDYLELHIHQGKIGVKFNVGTDDIAI   87 (220)
T ss_dssp             EEEEEEEEEEEEEECCGGGCCCBSEEEEEEEEECCCSSEEEEEEEEST----TCCCEEEEEEETTEEEEEEESSSSCEEE
T ss_pred             eEEECCCCeEEEEECCCCCcccccCcEEEEEEEeCCCCEEEEEecCCC----CCCCeEEEEEECCEEEEEEECCCCceEE
Confidence            57896 47999885332 112234568999999999999999964321    1369999999999999999999998888


Q ss_pred             EeCCceecCCCcEEEEEEEECCEEEEEEcCeeeecccCCCCcc--c-----------------------------eecCC
Q psy9228         731 KFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQD--V-----------------------------INTRG  779 (834)
Q Consensus       731 ~~s~~~~nDg~wH~V~i~r~~~~~~l~VD~~~~~~~~~~~~~~--~-----------------------------l~~~~  779 (834)
                      ..+..+||||+||+|+|.|.++.++|+||+..+.....++...  .                             ++...
T Consensus        88 ~~~~~~vnDG~WH~V~v~r~~~~~~L~VD~~~~~~~~~~g~~~~~~l~~~~~~ip~~~~~~~~~~~~~~~~~~~~~n~~~  167 (220)
T 2r1b_A           88 EESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGNNDNERLAIARQRIPYRLGRVVDEWLLDKGRQLTIFNSQA  167 (220)
T ss_dssp             ECTTCCCCSSSCEEEEEEEETTEEEEEETTSCCEEECC-----------------CHHHHHHHHHHHHHHHGGGSBCCEE
T ss_pred             EeCceEecCCceEEEEEEEeCCEEEEEECCcceeeeccCCCccchheeccccccccccccccccccccccccceEecCCC
Confidence            7445689999999999999999999999998654432222211  1                             23366


Q ss_pred             ceEEcCcCCCCCCCCCccCCCceEEEEEEEECCceecccCCC
Q psy9228         780 NIYLGGTPNMDLMTGGRYVHPMSGLMMNIHIQNKHISNIGSS  821 (834)
Q Consensus       780 ~lyiGG~p~~~~~~~~~~~~~F~GCi~~v~in~~~~~~l~~~  821 (834)
                      +|||||+|.         ..+|+|||++|++|+..+++|...
T Consensus       168 ~l~lGG~p~---------~~~F~GCi~~l~ing~~vl~la~~  200 (220)
T 2r1b_A          168 TIIIGGKEQ---------GQPFQGQLSGLYYNGLKVLNMAAE  200 (220)
T ss_dssp             EEEESSTTT---------TCCCCEEEEEEEETTBCHHHHHHT
T ss_pred             cEEECCccC---------CCCCEEEEeEEEECCChHHhHhhc
Confidence            899999982         468999999999999877777664

>3v64_A Low-density lipoprotein receptor-related protein; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} PDB: 3v65_A

Probab=99.90  E-value=1.5e-22  Score=198.30  Aligned_cols=155  Identities=28%  Similarity=0.547  Sum_probs=130.2

Q ss_pred             ceeEEEEEEEeeCCCCeeEEEeccCCccccCCCCCeEEEEEECcEEEEEEecc--cEEEEeeeeecCCCeEEEEEEEECC
Q psy9228         404 HLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVG--LVVLRSKVTLVPHEWVVVTIIKDFK  481 (834)
Q Consensus       404 ~~~~~i~~~frt~~~~GlLl~~~~~~~~~~~~~~d~~~l~L~~G~l~~~~~~G--~~~i~s~~~~~dg~wH~V~v~~~~~  481 (834)
                      ...++|+|+|||.+++|+|||.++.     ....||++|+|.+|++++++++|  ...+.+..+++||+||+|.+.|.++
T Consensus        34 ~~~~~isl~frT~~~~GlLl~~~~~-----~~~~d~l~l~L~~G~l~~~~~~G~~~~~l~s~~~v~Dg~WH~V~v~r~~~  108 (191)
T 3v64_A           34 LQSNHFELSLRTEATQGLVLWIGKA-----AERADYMALAIVDGHLQLSYDLGSQPVVLRSTVKVNTNRWLRIRAHREHR  108 (191)
T ss_dssp             ESEEEEEEEEECSCSSEEEEEESCC-----STTCCEEEEEEETTEEEEEEESSSCCEEEEEEEECTTSSCEEEEEEEETT
T ss_pred             ccceEEEEEEEeCCCCeEEEEeCCC-----CCCCcEEEEEEECCEEEEEEECCCccEEEecCccccCCCCEEEEEEEeCC
Confidence            4568999999999999999999752     23579999999999999999997  4677788899999999999999999


Q ss_pred             eEEEEECCeeeeeeecCCCccccccCCCceeeccccCCCcccCcCcccccCceeEEeeeEEcCeeeeecccccccCCccc
Q psy9228         482 EGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANIMD  561 (834)
Q Consensus       482 ~~~l~VD~~~~~~~~~~g~~~~~l~~~~~l~iGG~~~~~~~~~~~~~~~~gF~GCi~~v~ing~~~~~~~~~~~~~~~~~  561 (834)
                      .++|.||+........++. ...|++..++||||+|..............+|.|||++|.+|++.+++.+......++.+
T Consensus       109 ~~~L~VD~~~~~~~~~~~~-~~~l~~~~~lylGG~p~~~~~~~~~~~~~~~F~GCi~~l~in~~~l~l~~~~~~~~~~~g  187 (191)
T 3v64_A          109 EGSLQVGNEAPVTGSSPLG-ATQLDTDGALWLGGLQKLPVGQALPKAYGTGFVGCLRDVVVGHRQLHLLEDAVTKPELRP  187 (191)
T ss_dssp             EEEEEETTSCCEEEECCTT-CCCEEECSEEEESCCSSCCSSCCSCGGGTSBCEEEEEEEEETTEECCTTTTCSBCCCCCC
T ss_pred             EEEEEECCeeeEeEECCCC-cceeccCCceEEcccCcccccccccccccCCceEEeeEEEECCEEccchhHHhcCCCCCC
Confidence            9999999987777777776 778889999999999985322111223467999999999999999999988777777777


Q ss_pred             CCC
Q psy9228         562 CSD  564 (834)
Q Consensus       562 C~~  564 (834)
                      |+.
T Consensus       188 C~~  190 (191)
T 3v64_A          188 CPT  190 (191)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            763

>1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} SCOP: b.29.1.4 PDB: 1pz8_A 1pz9_A 1q56_A

Probab=99.90  E-value=1.4e-22  Score=201.17  Aligned_cols=153  Identities=33%  Similarity=0.596  Sum_probs=126.3

Q ss_pred             eeEEEEEEEeeCCCCeeEEEeccCCccccCCCCCeEEEEEECcEEEEEEecc--cEEEEeeeeecCCCeEEEEEEEECCe
Q psy9228         405 LHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVG--LVVLRSKVTLVPHEWVVVTIIKDFKE  482 (834)
Q Consensus       405 ~~~~i~~~frt~~~~GlLl~~~~~~~~~~~~~~d~~~l~L~~G~l~~~~~~G--~~~i~s~~~~~dg~wH~V~v~~~~~~  482 (834)
                      ..++|+|+|||.+++|+|||.++.     ....||++|+|.+|++++++++|  ...+.+..+++||+||+|.+.|.++.
T Consensus        48 ~~~~is~~frT~~~~GlLl~~g~~-----~~~~dfl~l~L~~G~l~~~~~~G~g~~~v~s~~~lnDg~WH~V~v~r~~~~  122 (204)
T 1pz7_A           48 QSNHFELSIKTEATQGLILWSGKG-----LERSDYIALAIVDGFVQMMYDLGSKPVVLRSTVPINTNHWTHIKAYRVQRE  122 (204)
T ss_dssp             SEEEEEEEEEECCSSEEEEEESCC-----STTCCEEEEEEETTEEEEEEESSSCCEEEEEEEECCSSSCEEEEEEEETTE
T ss_pred             eeEEEEEEEEcCCCCeEEEEeCCC-----CCCCCeEEEEEECCEEEEEEECCCCeEEEECCcccCCCCeEEEEEEEeCCE
Confidence            468999999999999999998642     13579999999999999999998  36778889999999999999999999


Q ss_pred             EEEEECCeeeeeeecCCCccccccCCCceeeccccCCCcccCcCcccccCceeEEeeeEEcCeeeeecccccccCCcccC
Q psy9228         483 GKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANIMDC  562 (834)
Q Consensus       483 ~~l~VD~~~~~~~~~~g~~~~~l~~~~~l~iGG~~~~~~~~~~~~~~~~gF~GCi~~v~ing~~~~~~~~~~~~~~~~~C  562 (834)
                      ++|.||+.......+++. ...|++..++||||+|........+.....+|.|||++|.+|++.+++........++.+|
T Consensus       123 ~~L~VD~~~~~~~~~~~~-~~~l~~~~~lylGG~p~~~~~~~~~~~~~~~F~GCi~~l~in~~~~dl~~~~~~~~~v~~C  201 (204)
T 1pz7_A          123 GSLQVGNEAPITGSSPLG-ATQLDTDGALWLGGMERLSVAHKLPKAYSTGFIGCIRDVIVDRQELHLVEDALNNPTILHC  201 (204)
T ss_dssp             EEEEETTSCCEEEECCSS-CCCEEECCEEEESSCSCCSTTTTSCGGGGSBCEEEEEEEEETTEECCTTTSCSSCCCCCBC
T ss_pred             EEEEECCcceEEEECCCC-CceEcCCCCEEEecCCCcccccccccccCCCceEEEEEEEECCEEccchhhhhcCCCCCCC
Confidence            999999987777677776 6778889999999999853221122234679999999999999999998766555556666


Q ss_pred             C
Q psy9228         563 S  563 (834)
Q Consensus       563 ~  563 (834)
                      +
T Consensus       202 ~  202 (204)
T 1pz7_A          202 S  202 (204)
T ss_dssp             -
T ss_pred             C
Confidence            4

>3pve_A Agrin, AGRN protein; mRNA splicing, structural genomics, PSI-2, protein structure initiative; 1.40A {Mus musculus}

Probab=99.88  E-value=8.1e-22  Score=192.90  Aligned_cols=167  Identities=31%  Similarity=0.586  Sum_probs=133.7

Q ss_pred             cccCCCcccccccCCccc----cceeEEEEEEEeeCCCCeeEEEeccCCccccCCCCCeEEEEEECcEEEEEEecc--cE
Q psy9228         385 PLFTQKPLSYLALPTLTD----AHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVG--LV  458 (834)
Q Consensus       385 ~~f~~~~~s~l~~~~~~~----~~~~~~i~~~frt~~~~GlLl~~~~~~~~~~~~~~d~~~l~L~~G~l~~~~~~G--~~  458 (834)
                      +.|.  ..||+.+|.+..    ....++|+|+|||.+++|+|||.++..    ....||++|+|.+|++++++++|  ..
T Consensus        12 ~~F~--g~syl~~~~~~~~~~~~~~~~~isl~frT~~~~GlLl~~~~~~----~~~~d~l~l~L~~G~l~~~~~~G~g~~   85 (189)
T 3pve_A           12 ADFN--GFSYLELKGLHTFERDLGEKMALEMVFLARGPSGLLLYNGQKT----DGKGDFVSLALHNRHLEFRYDLGKGAA   85 (189)
T ss_dssp             EEEE--SSCEEEECCGGGC-------CEEEEEEEESSSCEEEEEEESCC-----CCSCEEEEEEETTEEEEEEESSSCEE
T ss_pred             eEEC--CCceEEEcCcccccccccceEEEEEEEEeCCCCEEEEEecCCC----CCCCCeEEEEEECCEEEEEEecCCCCE
Confidence            4444  369999998854    245789999999999999999997531    13579999999999999999997  45


Q ss_pred             EEEeeeeecCCCeEEEEEEEECCeEEEEECCeeeeeeecCCCccccccCCCceeeccccCCCcccCcCcccccCceeEEe
Q psy9228         459 VLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCIS  538 (834)
Q Consensus       459 ~i~s~~~~~dg~wH~V~v~~~~~~~~l~VD~~~~~~~~~~g~~~~~l~~~~~l~iGG~~~~~~~~~~~~~~~~gF~GCi~  538 (834)
                      .+.+..+++||+||+|.+.|.++.++|.||+........++. ...|++..++||||+|.... .........+|.|||+
T Consensus        86 ~l~s~~~l~Dg~WH~V~v~r~~~~~~L~VD~~~~~~~~~~~~-~~~l~~~~~lyvGG~p~~~~-~~~~~~~~~~F~GCi~  163 (189)
T 3pve_A           86 IIRSKEPIALGTWVRVFLERNGRKGALQVGDGPRVLGESPVP-HTMLNLKEPLYVGGAPDFSK-LARGAAVASGFDGAIQ  163 (189)
T ss_dssp             EEECSSCCCTTSEEEEEEEEETTEEEEEETTSCCEEEECCSS-CCCCCCCSCEEESCCSCGGG-SCGGGCCCSBCEEEEE
T ss_pred             EEEcCcccCCCCEEEEEEEEeCCEEEEEECCceeEeEEcCCC-cceecCCCCEEECCcCchhh-cccccccCCCCcEEce
Confidence            677888999999999999999999999999987777777776 77888999999999987432 1223345689999999


Q ss_pred             eeEEcCeeeeecccccccCCc
Q psy9228         539 TIDVLGSELDLINSAVDSANI  559 (834)
Q Consensus       539 ~v~ing~~~~~~~~~~~~~~~  559 (834)
                      ++.+|++.+++........+|
T Consensus       164 ~v~ing~~l~~~~~~~~~~~v  184 (189)
T 3pve_A          164 LVSLRGHQLLTQEHVLRAVDV  184 (189)
T ss_dssp             EEEETTEECCBGGGEEEEESC
T ss_pred             EEEECCEEccChhhccccccc
Confidence            999999999777665554444

>3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal binding Pro; 1.50A {Homo sapiens} PDB: 3sh5_A

Probab=99.88  E-value=3.7e-22  Score=196.20  Aligned_cols=169  Identities=28%  Similarity=0.488  Sum_probs=135.7

Q ss_pred             cccccccCCcccc----ceeEEEEEEEeeCCCCeeEEEeccCCccccCCCCCeEEEEEECcEEEEEEecc--cEEEEeee
Q psy9228         391 PLSYLALPTLTDA----HLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVG--LVVLRSKV  464 (834)
Q Consensus       391 ~~s~l~~~~~~~~----~~~~~i~~~frt~~~~GlLl~~~~~~~~~~~~~~d~~~l~L~~G~l~~~~~~G--~~~i~s~~  464 (834)
                      ..||+.+|.+...    ...++|+|+|||.+++|+|||.++.... .....||++|+|.+|++++++++|  ...+.+..
T Consensus        12 G~syl~lp~~~~~~~~~~~~~~is~~frT~~~~GlLl~~~~~~~~-~~~~~d~l~l~L~~G~l~~~~~~G~g~~~~~s~~   90 (195)
T 3sh4_A           12 DDGFLAFPGHVFSRSLPEVPETIELEVRTSTASGLLLWQGVEVGE-AGQGKDFISLGLQDGHLVFRYQLGSGEARLVSED   90 (195)
T ss_dssp             EEEEEEECGGGGCCCSTTCCEEEEEEEEECCSSEEEEEECCCTTC-TTSTTCEEEEEEETTEEEEEEECSSCEEEEEEEE
T ss_pred             CCEEEEEccccccccccccceEEEEEEEeCCCCcEEEEecccccC-CCCCCcEEEEEEeCCEEEEEEECCCCcEEEEcCc
Confidence            4699999987422    3458999999999999999998742100 023579999999999999999997  46677889


Q ss_pred             eecCCCeEEEEEEEECCeEEEEECCeeeeeeecCCCccccccCCCceeeccccCCCcccCcCcccccCceeEEeeeEEc-
Q psy9228         465 TLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVL-  543 (834)
Q Consensus       465 ~~~dg~wH~V~v~~~~~~~~l~VD~~~~~~~~~~g~~~~~l~~~~~l~iGG~~~~~~~~~~~~~~~~gF~GCi~~v~in-  543 (834)
                      .++||+||+|.+.|.++.++|.||+........++. ...|++..+|||||+|.....  .......+|.|||++|.+| 
T Consensus        91 ~l~Dg~WH~V~v~r~~~~~~L~VD~~~~~~~~~~~~-~~~l~~~~~lyvGG~p~~~~~--~~~~~~~~F~GCi~~l~in~  167 (195)
T 3sh4_A           91 PINDGEWHRVTALREGRRGSIQVDGEELVSGRSPGP-NVAVNAKGSVYIGGAPDVATL--TGGRFSSGITGCVKNLVLHS  167 (195)
T ss_dssp             ECCSSSCEEEEEEEETTEEEEEETTCCCEEEECCSS-CCCCCCCSCEEESCCTTHHHH--TTTSCCCCCSEEEEEEEEEE
T ss_pred             eeCCCCeEEEEEEEeCCEEEEEECCeeeeeeeCCCC-cccccCCCCEEECCCCCcccc--cccccccCCEEEEEEEEECC
Confidence            999999999999999999999999988777777776 677888999999999873210  1123467999999999997 


Q ss_pred             -------CeeeeecccccccCCcccCC
Q psy9228         544 -------GSELDLINSAVDSANIMDCS  563 (834)
Q Consensus       544 -------g~~~~~~~~~~~~~~~~~C~  563 (834)
                             ++.+|+...+....++..|+
T Consensus       168 ~~~~~~~~~~ldl~~~a~~~~nv~~C~  194 (195)
T 3sh4_A          168 ARPGAPPPQPLDLQHRAQAGANTRPCP  194 (195)
T ss_dssp             CCTTCCCCCCCCTTTSCSEEEEEEECC
T ss_pred             cCCCCCCceeecchhhhccCCccCCCC
Confidence                   57889888777777777775

>1d2s_A SHBG, sex hormone-binding globulin; steroid transport, laminin G-like domain, jellyroll, androgen binding protein (ABP); HET: DHT; 1.55A {Homo sapiens} SCOP: b.29.1.4 PDB: 1kdk_A* 1kdm_A*

Probab=99.88  E-value=9.5e-22  Score=188.41  Aligned_cols=154  Identities=19%  Similarity=0.259  Sum_probs=123.6

Q ss_pred             ccCCCcccccccCCccccceeEEEEEEEeeCCCCeeEEEeccCCccccCCCCCeEEEEEECcEEEEEEecc--cEEEEee
Q psy9228         386 LFTQKPLSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVG--LVVLRSK  463 (834)
Q Consensus       386 ~f~~~~~s~l~~~~~~~~~~~~~i~~~frt~~~~GlLl~~~~~~~~~~~~~~d~~~l~L~~G~l~~~~~~G--~~~i~s~  463 (834)
                      .|.+.+.+|+.++.+..  ..++|+|+|||.+++|+|||.+..      ...||++|+|.+|+++++++.|  .+.+.+.
T Consensus         9 ~F~g~s~~~l~f~~~~~--~~~~is~~FrT~~~~GlLly~~~~------~~~df~~l~L~~G~l~~~~~~g~~~~~~~s~   80 (170)
T 1d2s_A            9 GPGQEPIAVMTFDLTKI--TKTSSSFEVRTWDPEGVIFYGDTN------PKDDWFMLGLRDGRPEIQLHNHWAQLTVGAG   80 (170)
T ss_dssp             TTCCSCSEEEEEEGGGC--CCCEEEEEEEESCSSEEEEEEEEE------TTTEEEEEEEETTEEEEEEESSSCEEEEECS
T ss_pred             CCCCCceEEEEecCCCC--CceEEEEEEEeCCCCEEEEEecCC------CCCCEEEEEEeCCEEEEEEECCCceEEEeCC
Confidence            46677788898887654  357999999999999999999752      3479999999999999999998  3556678


Q ss_pred             eeecCCCeEEEEEEEECCeEEEEECCeeeeeeecCCCccccccCCCceeeccccCCCcccCcCcccccCceeEEeeeEEc
Q psy9228         464 VTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVL  543 (834)
Q Consensus       464 ~~~~dg~wH~V~v~~~~~~~~l~VD~~~~~~~~~~g~~~~~l~~~~~l~iGG~~~~~~~~~~~~~~~~gF~GCi~~v~in  543 (834)
                      ..++||+||+|.+.|.++.++|.||+.........+    .+.. .++||||+|......  ......+|.|||+++.+|
T Consensus        81 ~~vnDG~WH~V~v~~~~~~~~L~VD~~~~~~~~~~~----~l~~-~~lylGG~p~~~~~~--~~~~~~~F~GCi~~l~in  153 (170)
T 1d2s_A           81 PRLDDGRWHQVEVKMEGDSVLLEVDGEEVLRLRQVS----GHPI-MRIALGGLLFPASNL--RLPLVPALDGCLRRDSWL  153 (170)
T ss_dssp             CCCCSSSCEEEEEEEETTEEEEEETTEEEEEETTCC----CCCE-EEEEESSCSSCGGGS--SSCCCCCCCEEEEEEEES
T ss_pred             CccCCCCCEEEEEEEeCCEEEEEECCeeeeeeccCC----Cccc-ccEEEECcccchhhc--ccCCCCCeeeEeEEeEEC
Confidence            889999999999999999999999998776543322    2333 689999999743211  224568899999999999


Q ss_pred             Ceeeeeccccc
Q psy9228         544 GSELDLINSAV  554 (834)
Q Consensus       544 g~~~~~~~~~~  554 (834)
                      +..+++...+.
T Consensus       154 ~~~~~l~~~~~  164 (170)
T 1d2s_A          154 DKQAEISASAP  164 (170)
T ss_dssp             CGGGEEEEECS
T ss_pred             Cccceeeeccc
Confidence            99988877654

>1f5f_A SHBG, sex hormone-binding globulin; jellyroll, signaling protein; HET: DHT; 1.70A {Homo sapiens} SCOP: b.29.1.4 PDB: 1lhw_A* 1lho_A* 1lhn_A* 1lhv_A* 1lhu_A*

Probab=99.84  E-value=2.2e-20  Score=185.25  Aligned_cols=160  Identities=18%  Similarity=0.278  Sum_probs=120.2

Q ss_pred             ccccccCCccccceeEEEEEEEeeCCCCeeEEEeccCCccccCCCCCeEEEEEECcEEEEEEecc--cEEEEeeeeecCC
Q psy9228         392 LSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVG--LVVLRSKVTLVPH  469 (834)
Q Consensus       392 ~s~l~~~~~~~~~~~~~i~~~frt~~~~GlLl~~~~~~~~~~~~~~d~~~l~L~~G~l~~~~~~G--~~~i~s~~~~~dg  469 (834)
                      .+|+.++....  ..++|+|+|||.+++|+|||.+..      ...||++|+|.+|+++++++.|  .+.+.+...++||
T Consensus        27 ~~y~~~~~~~~--~~~~is~~frT~~~~GlLly~~~~------~~~d~~~l~L~~G~l~~~~~~g~~~~~~~s~~~vnDG   98 (205)
T 1f5f_A           27 IAVMTFDLTKI--TKTSSSFEVRTWDPEGVIFYGDTN------PKDDWFMLGLRDGRPEIQLHNHWAQLTVGAGPRLDDG   98 (205)
T ss_dssp             SEEEEEEGGGC--CCCEEEEEEEESCSSEEEEEEEEE------TTTEEEEEEEETTEEEEEEESSSCEEEEECSCCCCSS
T ss_pred             eEEEEECCCCC--CceEEEEEEEeCCCCEEEEEeCCC------CCCCEEEEEEECCEEEEEEECCCceEEEecCCccCCC
Confidence            47788876543  237999999999999999999752      2469999999999999999997  3556678899999


Q ss_pred             CeEEEEEEEECCeEEEEECCeeeeeeecCCCccc-cccCCCceeeccccCCCcccCcCcccccCceeEEeeeEEcCeeee
Q psy9228         470 EWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQ-VLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELD  548 (834)
Q Consensus       470 ~wH~V~v~~~~~~~~l~VD~~~~~~~~~~g~~~~-~l~~~~~l~iGG~~~~~~~~~~~~~~~~gF~GCi~~v~ing~~~~  548 (834)
                      +||+|.+.|..+.++|.||+.............. .+....++||||+|......  ......+|.|||+++.+++..++
T Consensus        99 ~WH~V~v~r~~~~~~L~VD~~~~~~~~~~~~~~~~~~~~~~~lyiGG~p~~~~~~--~~~~~~~F~GCi~~l~i~~~~~~  176 (205)
T 1f5f_A           99 RWHQVEVKMEGDSVLLEVDGEEVLRLRQVSGPLTSKRHPIMRIALGGLLFPASNL--RLPLVPALDGCLRRDSWLDKQAE  176 (205)
T ss_dssp             SCEEEEEEEETTEEEEEETTEEEEEECSCCCCC----CCEEEEEESSCSSCGGGS--SSCCCCCCCEEEEEEECSCGGGE
T ss_pred             CCEEEEEEEeCCEEEEEECCeeeeeeeccCCCcccccCCCceEEEeCccCccccc--cccCCCCeeEEeeeeEECCeecc
Confidence            9999999999999999999988665431111011 12223689999999743211  23456899999999999999998


Q ss_pred             ecccccccCCcccCC
Q psy9228         549 LINSAVDSANIMDCS  563 (834)
Q Consensus       549 ~~~~~~~~~~~~~C~  563 (834)
                      +....  ..++..|.
T Consensus       177 l~~~~--~~~v~~C~  189 (205)
T 1f5f_A          177 ISASA--PTSLRSCD  189 (205)
T ss_dssp             EEEEC--SSCCCBC-
T ss_pred             ccccC--cccCCCCC
Confidence            87643  24555564

>2r16_A Neurexin-1-alpha; beta-sandwich, cell adhesion, splicing; 1.04A {Bos taurus}

Probab=99.83  E-value=6.2e-20  Score=178.17  Aligned_cols=146  Identities=20%  Similarity=0.322  Sum_probs=118.5

Q ss_pred             cccccc--CCccccceeEEEEEEEeeCCCCeeEEEeccCCccccCCCCCeEEEEEECcEEEEEEecc--cEEEEeeeeec
Q psy9228         392 LSYLAL--PTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVG--LVVLRSKVTLV  467 (834)
Q Consensus       392 ~s~l~~--~~~~~~~~~~~i~~~frt~~~~GlLl~~~~~~~~~~~~~~d~~~l~L~~G~l~~~~~~G--~~~i~s~~~~~  467 (834)
                      .||+.+  |... ....++|+|+|||.+++|+|||.+..      ...||++|+|.+|++++++++|  ...+.+...++
T Consensus        13 ~sy~~~~~~~~~-~~~~~~isl~FrT~~~~GlLl~~~~~------~~~d~l~L~L~~G~l~~~~~~G~~~~~~~~~~~ln   85 (182)
T 2r16_A           13 SMFMKIQLPVVM-HTEAEDVSLRFRSQRAYGILMATTSR------DSADTLRLELDAGRVKLTVNLGKGPETLFAGYNLN   85 (182)
T ss_dssp             SCCEEEEEEEEE-EESEEEEEEEEECSCSSEEEEEEECS------SSCCEEEEEEETTEEEEEEESSSCCEEEEECSSCC
T ss_pred             CceEEEECCCcC-CccceEEEEEEEECCCCEEEEEeCCC------CCCCEEEEEEECCEEEEEEECCCCceEEEcCcccC
Confidence            477654  3332 24568999999999999999999752      3689999999999999999987  46777888999


Q ss_pred             CCCeEEEEEEEECCeEEEEECCeeeeeeecCCCccccccCCCceeeccccCCCcccCcCcccccCceeEEeeeEEcCeee
Q psy9228         468 PHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSEL  547 (834)
Q Consensus       468 dg~wH~V~v~~~~~~~~l~VD~~~~~~~~~~g~~~~~l~~~~~l~iGG~~~~~~~~~~~~~~~~gF~GCi~~v~ing~~~  547 (834)
                      ||+||+|.+.|.++.++|.||+........++. ...|++. ++|+||+|....    ......+|.|||++|.+|+..+
T Consensus        86 Dg~WH~V~v~r~~~~~~L~VD~~~~~~~~~~g~-~~~l~~~-~l~iGG~~~~~~----~~~~~~~F~GCi~~l~in~~~~  159 (182)
T 2r16_A           86 DNEWHTVRVVRRGKSLKLTVDDQQAMTGQMAGD-HTRLEFH-NIETGIITERRY----LSSVPSNFIGHLQSLTFNGMAY  159 (182)
T ss_dssp             SSSCEEEEEEEETTEEEEEETTCCEEEEECCSS-CCCEEEE-EEEESSCCCCTT----CSSCCCCCEEEEEEEEETTEEH
T ss_pred             CCCeEEEEEEEECCEEEEEECCceeEeEECCCC-ccEEecc-CeEECCcccccc----cCCCCCCCEEEEeEEEECCEEh
Confidence            999999999999999999999988777677776 6677776 799999987421    1233578999999999999884


Q ss_pred             -eec
Q psy9228         548 -DLI  550 (834)
Q Consensus       548 -~~~  550 (834)
                       ++.
T Consensus       160 ~~~~  163 (182)
T 2r16_A          160 IDLC  163 (182)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence             444

>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium, cell adhesion, EGF-like domain, glycoprotein, membrane, metal- binding; 1.70A {Mus musculus} PDB: 2vh8_C 2xb6_C* 2wqz_C* 1c4r_A 3bop_A 3mw4_A*

Probab=99.82  E-value=6.9e-20  Score=177.18  Aligned_cols=145  Identities=19%  Similarity=0.352  Sum_probs=114.0

Q ss_pred             cccccc--CCc-cccceeEEEEEEEeeCCCCeeEEEeccCCccccCCCCCeEEEEEECcEEEEEEeccc--EEEE-eeee
Q psy9228         392 LSYLAL--PTL-TDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVGL--VVLR-SKVT  465 (834)
Q Consensus       392 ~s~l~~--~~~-~~~~~~~~i~~~frt~~~~GlLl~~~~~~~~~~~~~~d~~~l~L~~G~l~~~~~~G~--~~i~-s~~~  465 (834)
                      .||+.+  +.. ........|+|+|||.+++|+|||....     ....||++|+|.+|++++++++|.  ..+. +...
T Consensus        13 ~s~l~y~~~~~~~~~~~~~~isl~FrT~~~~GlLl~~~~~-----~~~~dfi~l~L~~G~l~~~~~~G~~~~~~~~~~~~   87 (178)
T 3bod_A           13 GGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSS-----SGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAI   87 (178)
T ss_dssp             EEEEEEECCTTSCCCBSEEEEEEEEECCCSSEEEEEEEES-----SSSCCEEEEEEETTEEEEEEESSSCCEEEECCSSC
T ss_pred             CcEEEEECCCcCCCCccccEEEEEEEECCCCEEEEEEcCC-----CCCCCEEEEEEECCEEEEEEECCCCceEEecCCcC
Confidence            466554  332 2234568999999999999999996421     246899999999999999999983  4444 4578


Q ss_pred             ecCCCeEEEEEEEECCeEEEEECCeeeeeeecCCCccccccCCCceeeccccCCCcccCcCcccccCceeEEeeeEEcCe
Q psy9228         466 LVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGS  545 (834)
Q Consensus       466 ~~dg~wH~V~v~~~~~~~~l~VD~~~~~~~~~~g~~~~~l~~~~~l~iGG~~~~~~~~~~~~~~~~gF~GCi~~v~ing~  545 (834)
                      ++||+||+|.+.|.++.++|.||+........++.....|+...++||||+|.           ..+|.|||+++.+|++
T Consensus        88 vnDg~WH~V~v~r~~~~~~L~VD~~~~~~~~~~~~~~~~l~~~~~lylGG~p~-----------~~~F~GCi~~v~in~~  156 (178)
T 3bod_A           88 INDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKEQ-----------GQPFQGQLSGLYYNGL  156 (178)
T ss_dssp             CCSSSCEEEEEEEETTEEEEEETTSCCEEECCCSCCCCCBCCEEEEEESCCTT-----------SCBCCEEEEEEEETTE
T ss_pred             ccCCCeEEEEEEEeCCEEEEEEeCCceeeeecCCCcceEEeCCCcEEEecccC-----------CCCCEEEEEEEEECCE
Confidence            99999999999999999999999987655444443135578888999999986           2689999999999999


Q ss_pred             e-eeeccc
Q psy9228         546 E-LDLINS  552 (834)
Q Consensus       546 ~-~~~~~~  552 (834)
                      . +++...
T Consensus       157 ~vl~l~~~  164 (178)
T 3bod_A          157 KVLNMAAE  164 (178)
T ss_dssp             EHHHHHHT
T ss_pred             ehHhHhhc
Confidence            7 666643

>2h0b_A Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A {Bos taurus}

Probab=99.82  E-value=1.8e-19  Score=175.77  Aligned_cols=148  Identities=22%  Similarity=0.366  Sum_probs=118.1

Q ss_pred             ccccccCCccc--cceeEEEEEEEeeCCCCeeEEEeccCCccccCCCCCeEEEEEECcEEEEEEecccE--E-E--Eeee
Q psy9228         392 LSYLALPTLTD--AHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVGLV--V-L--RSKV  464 (834)
Q Consensus       392 ~s~l~~~~~~~--~~~~~~i~~~frt~~~~GlLl~~~~~~~~~~~~~~d~~~l~L~~G~l~~~~~~G~~--~-i--~s~~  464 (834)
                      .+|+.++....  ....++|+|+|||.+++|+|||.++        ..||++|+|.+|++++++++|..  . +  .+..
T Consensus        13 ~sy~~~~~~~~~~~~~~~~isl~frT~~~~GlLl~~g~--------~~d~l~l~L~~G~l~~~~~~G~g~~~~~~~~~~~   84 (184)
T 2h0b_A           13 SEYFCYDLSQNPIQSSSDEITLSFKTLQRNGLMLHTGK--------SADYVNLALKNGAVSLVINLGSGAFEALVEPVNG   84 (184)
T ss_dssp             SEEEEEECSSSCEEESEEEEEEEEEESCSCEEEEEECC--------TTEEEEEEEETTEEEEEEEESSCEEEEEECCSSS
T ss_pred             ceEEEEccccCccccCccEEEEEEEeCCCCEEEEEeCC--------CCCEEEEEEECCEEEEEEECCCCeEEEEEecCCc
Confidence            57887765432  2356899999999999999999853        47999999999999999998742  2 2  3567


Q ss_pred             eecCCCeEEEEEEEECCeEEEEECCeeeeeeecCCCccccccCCCceeeccccCCCcccCcCcccccCceeEEeeeEEcC
Q psy9228         465 TLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLG  544 (834)
Q Consensus       465 ~~~dg~wH~V~v~~~~~~~~l~VD~~~~~~~~~~g~~~~~l~~~~~l~iGG~~~~~~~~~~~~~~~~gF~GCi~~v~ing  544 (834)
                      .++||+||+|.+.|..+.++|.||+........++. ...++...++||||+|.....  .......+|.|||+++.+|+
T Consensus        85 ~l~Dg~WH~V~v~r~~~~~~L~VD~~~~~~~~~~~~-~~~l~~~~~l~lGG~p~~~~~--~~~~~~~~F~GCi~~v~in~  161 (184)
T 2h0b_A           85 KFNDNAWHDVKVTRNLRQVTISVDGILTTTGYTQED-YTMLGSDDFFYVGGSPSTADL--PGSPVSNNFMGCLKEVVYKN  161 (184)
T ss_dssp             CSSSSSCEEEEEEEETTEEEEEETTTEEEEEECSTT-CCCEEECSEEEESCCTTGGGS--TTCSCCCBCEEEEEEEEEEE
T ss_pred             ccCCCCeEEEEEEEeCCEEEEEEcCceeeeeECCCC-ceeccCCCCEEECCCCccccC--cCCcccCCCEEEeeEEEECC
Confidence            899999999999999999999999987776666665 556778889999999874221  12345678999999999999


Q ss_pred             eeeeec
Q psy9228         545 SELDLI  550 (834)
Q Consensus       545 ~~~~~~  550 (834)
                      +.+++.
T Consensus       162 ~~~~l~  167 (184)
T 2h0b_A          162 NDVRLE  167 (184)
T ss_dssp             SSCEEC
T ss_pred             EEcchh
Confidence            886543

>2r1b_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 1.72A {Rattus norvegicus} PDB: 3mw2_A* 3b3q_E* 3mw3_A*

Probab=99.78  E-value=8.8e-19  Score=174.90  Aligned_cols=132  Identities=18%  Similarity=0.343  Sum_probs=102.1

Q ss_pred             ceeEEEEEEEeeCCCCeeEEEeccCCccccCCCCCeEEEEEECcEEEEEEeccc--EEEEee-eeecCCCeEEEEEEEEC
Q psy9228         404 HLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVGL--VVLRSK-VTLVPHEWVVVTIIKDF  480 (834)
Q Consensus       404 ~~~~~i~~~frt~~~~GlLl~~~~~~~~~~~~~~d~~~l~L~~G~l~~~~~~G~--~~i~s~-~~~~dg~wH~V~v~~~~  480 (834)
                      .....|+|.|||.+++|+|||.+..     ....||++|+|.+|++++++++|.  ..+... ..++||+||+|++.|.+
T Consensus        34 ~~~~~isl~FrT~~~~GlLly~~~~-----~~~~dfi~LeL~~G~l~~~~~~G~~~~~~~~~~~~vnDG~WH~V~v~r~~  108 (220)
T 2r1b_A           34 TRADRLAIGFSTVQKEAVLVRVDSS-----SGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSG  108 (220)
T ss_dssp             BSEEEEEEEEECCCSSEEEEEEEES-----TTCCCEEEEEEETTEEEEEEESSSSCEEEECTTCCCCSSSCEEEEEEEET
T ss_pred             ccCcEEEEEEEeCCCCEEEEEecCC-----CCCCCeEEEEEECCEEEEEEECCCCceEEEeCceEecCCceEEEEEEEeC
Confidence            3456899999999999999996432     135799999999999999999983  555553 57999999999999999


Q ss_pred             CeEEEEECCeeeeeeecCCCccc--c-----------------------------ccCCCceeeccccCCCcccCcCccc
Q psy9228         481 KEGKLSVGGEPLIVGSTPGEKLQ--V-----------------------------LNLRTPLYLGGYNIYHVTPSLSVEV  529 (834)
Q Consensus       481 ~~~~l~VD~~~~~~~~~~g~~~~--~-----------------------------l~~~~~l~iGG~~~~~~~~~~~~~~  529 (834)
                      +.++|.||+........++. ..  .                             ++...++||||+|.           
T Consensus       109 ~~~~L~VD~~~~~~~~~~g~-~~~~~l~~~~~~ip~~~~~~~~~~~~~~~~~~~~~n~~~~l~lGG~p~-----------  176 (220)
T 2r1b_A          109 GNATLQVDSWPVIERYPAGN-NDNERLAIARQRIPYRLGRVVDEWLLDKGRQLTIFNSQATIIIGGKEQ-----------  176 (220)
T ss_dssp             TEEEEEETTSCCEEECC------------------CHHHHHHHHHHHHHHHGGGSBCCEEEEEESSTTT-----------
T ss_pred             CEEEEEECCcceeeeccCCC-ccchheeccccccccccccccccccccccccceEecCCCcEEECCccC-----------
Confidence            99999999986554333332 11  2                             22366899999983           


Q ss_pred             ccCceeEEeeeEEcCee-eeeccc
Q psy9228         530 TEGFHGCISTIDVLGSE-LDLINS  552 (834)
Q Consensus       530 ~~gF~GCi~~v~ing~~-~~~~~~  552 (834)
                      ..+|.|||+++.+|++. +++...
T Consensus       177 ~~~F~GCi~~l~ing~~vl~la~~  200 (220)
T 2r1b_A          177 GQPFQGQLSGLYYNGLKVLNMAAE  200 (220)
T ss_dssp             TCCCCEEEEEEEETTBCHHHHHHT
T ss_pred             CCCCEEEEeEEEECCChHHhHhhc
Confidence            46899999999999986 466543

>2r1d_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 2.60A {Rattus norvegicus} SCOP: b.29.1.4 PDB: 3biw_E*

Probab=99.78  E-value=1.4e-18  Score=173.59  Aligned_cols=129  Identities=18%  Similarity=0.361  Sum_probs=105.2

Q ss_pred             eeEEEEEEEeeCCCCeeEEEeccCCccccCCCCCeEEEEEECcEEEEEEeccc--EEEEe-eeeecCCCeEEEEEEEECC
Q psy9228         405 LHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVGL--VVLRS-KVTLVPHEWVVVTIIKDFK  481 (834)
Q Consensus       405 ~~~~i~~~frt~~~~GlLl~~~~~~~~~~~~~~d~~~l~L~~G~l~~~~~~G~--~~i~s-~~~~~dg~wH~V~v~~~~~  481 (834)
                      ....|+|.|||.+++|+|||.+..     ....||++|+|.+|++++++++|.  ..+.. ...++||+||+|++.|.++
T Consensus        63 ~~~~isl~FrT~~~~GlLl~~~~~-----~~~~dfi~L~L~~G~l~~~~~~G~~~~~~~~~~~~vnDG~WH~V~v~r~~~  137 (226)
T 2r1d_A           63 RADRLAIGFSTVQKEAVLVRVDSS-----SGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGG  137 (226)
T ss_dssp             SEEEEEEEEECCCSSEEEEEEEEC-----TTCCCEEEEEEETTEEEEEEESSSCEEEEECCSSCCCSSSCEEEEEEEETT
T ss_pred             cccEEEEEEEeCCCCEEEEEecCC-----CCCCCEEEEEEECCEEEEEEECCCCcEEEEeCCeEecCCCCEEEEEEEeCC
Confidence            456899999999999999997531     135799999999999999999984  44544 3679999999999999999


Q ss_pred             eEEEEECCeeeeee-ecCCCccccccCCCceeeccccCCCcccCcCcccccCceeEEeeeEEcCeee-eec
Q psy9228         482 EGKLSVGGEPLIVG-STPGEKLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSEL-DLI  550 (834)
Q Consensus       482 ~~~l~VD~~~~~~~-~~~g~~~~~l~~~~~l~iGG~~~~~~~~~~~~~~~~gF~GCi~~v~ing~~~-~~~  550 (834)
                      .+.|+||+...... ..++. ...|+...++||||+|.           ..+|.|||++|.+|+..+ ++.
T Consensus       138 ~~~L~VD~~~~~~~~~~~~~-~~~l~~~~~lylGG~p~-----------~~~F~GCi~~v~ing~~vl~la  196 (226)
T 2r1d_A          138 NATLQVDSWPVIERYPAGRQ-LTIFNSQATIIIGGKEQ-----------GQPFQGQLSGLYYNGLKVLNMA  196 (226)
T ss_dssp             EEEEEETTSCCEEECCSSCC-CCCBCSEEEEEESSTTT-----------TCCCCEEEEEEEETTBCHHHHH
T ss_pred             EEEEEEcCccceEEecCCCc-ceeccCCCeEEEccccC-----------CCCCeEEEeeEEECCEeHHhhh
Confidence            99999999764332 33444 56788888999999986           268999999999999853 443

>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A*

Probab=99.77  E-value=1.8e-22  Score=200.74  Aligned_cols=96  Identities=16%  Similarity=0.085  Sum_probs=80.2

Q ss_pred             CceeEEEcCCcceeeeeCCcccCCCcceeeeeCCCCCCCcCCCCccCCCCccceEEEEEEcCEEEEeecccccccCCCCC
Q psy9228          56 VERMMFVDGIGPFSGESQGAFQGLDLSELVYIGAVPDFGEIHPSAGFSNGFKGCVSRLKYNKTEFELFKMAVERVGVDSC  135 (834)
Q Consensus        56 ~~g~~cvd~~~~~~~~~~~~~~g~~~~~~~~~gg~p~~~~~~~~~~~~~gf~gCi~~~~~~~~~~~~~~~~~~~~~~~~c  135 (834)
                      .||+.|+|+.++|+|.||.+|+|.+|+..++.                     |...                       
T Consensus        41 ~ngG~C~~g~~~y~C~Cp~Gf~G~~Ce~ni~e---------------------c~~~-----------------------   76 (267)
T 4fbr_A           41 DDGGKTLKGTMTYNGEGPIGFRGTLSSANNYT---------------------VENQ-----------------------   76 (267)
T ss_dssp             SSTTSEEEEEEEETTSCCEEEEEEECSTTEEE---------------------EEEE-----------------------
T ss_pred             CCCCeecCCCCCeEEeCCCCcccccccccccc---------------------cccc-----------------------
Confidence            79999999999999999999999999876620                     1000                       


Q ss_pred             CccCCCCCCCCCCCCEeccCCCCCceEeeCCCCCCCCCCCCCCCCccCCCCCC-CeeecCCCCeEEeCCCCcccCccccc
Q psy9228         136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGD-GSCQDVDGAMKCLCPIGTAGKRCEQK  214 (834)
Q Consensus       136 ~~C~~~~~~pC~n~g~C~~~~~~~~~~C~C~~g~~G~~Ce~~~~~C~~~~C~~-g~C~~~~~~~~C~C~~g~~G~~Ce~~  214 (834)
                      ..|.   ++||+|+|+|.                .|.+|+.. ++|.+.||+| |+|++...+|+|.|+.||+|.+||.+
T Consensus        77 ~~c~---s~pC~nggtc~----------------~G~~c~~~-~eC~s~pC~ngG~C~~~~~sy~C~C~~Gf~G~~Ce~~  136 (267)
T 4fbr_A           77 WGGT---SAPWQPGGVWV----------------LGARDKQN-IVAVSIKSNDGGKTLTGTTTYNGEGPIGFKSEVTDGD  136 (267)
T ss_dssp             SSST---TSCEEEEEEEE----------------CCCCSSCC-EEEEEEECSSTTSEEEEEEEETTSCCEEEEEEECCCC
T ss_pred             cCcC---CCcccCCCeee----------------ccCccccc-cccCCCCCCCCCEEecCCccEEeeCCCCccccCCCCC
Confidence            2366   99999998874                46788665 5999999997 79999999999999999999999987


Q ss_pred             c
Q psy9228         215 I  215 (834)
Q Consensus       215 ~  215 (834)
                      +
T Consensus       137 ~  137 (267)
T 4fbr_A          137 T  137 (267)
T ss_dssp             E
T ss_pred             c
Confidence            4

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A

Probab=99.75  E-value=1.3e-19  Score=176.83  Aligned_cols=74  Identities=22%  Similarity=0.537  Sum_probs=62.3

Q ss_pred             CCCCCCCCCCeec----ccCCCCCceeeecCCCCCC-----CCCccC-ccCCCCCCcc-CCCceeeecCCCcEEcCCCCC
Q psy9228         571 CAPKPCQNYGICY----PTDTSERGYNCSCLTGYSG-----DHCEKE-NNMCMKGDVC-KNGGMCKVTPDSYECLCSLGY  639 (834)
Q Consensus       571 C~~~pC~ngg~C~----~~~~~~~~~~C~C~~G~~G-----~~Ce~~-~~~C~~~~pC-~ngg~C~~~~~~~~C~C~~g~  639 (834)
                      |..+||.|+|+|+    +...   +|+|.|++||+|     ..|+.. +++|. . || .++++|++..++|+|.|++||
T Consensus        94 C~~~~C~~~g~C~~~~~~~~g---~~~C~C~~Gy~g~~~~~~~C~~~~~~~C~-~-~C~~~~~~C~n~~g~y~C~C~~G~  168 (186)
T 1z1y_A           94 CQYXNCGESGECIVEYLSEIQ---SAGCSCAIGXVPNPEDEXXCTXTGETACQ-L-XCNTDNEVCXNVEGVYXCQCMEGF  168 (186)
T ss_dssp             GTTCCCCTTEEEEEEEETTEE---EEEEEECTEEEEETTTTTEEEEEECCCCC-C-CCCTTTEEEEEETTEEEEEECTTC
T ss_pred             CcCCCCCCCCEEeeCCcCCCC---CceEECCCCCcccCCCCCcceEcCCCccc-c-cccccCcceecCCCCeeeECCCCC
Confidence            4455677777777    4444   899999999998     899875 68997 4 99 999999999999999999999


Q ss_pred             CCCCcccccc
Q psy9228         640 APPNCAKRVS  649 (834)
Q Consensus       640 ~G~~Ce~~~~  649 (834)
                      +|..|+..+.
T Consensus       169 ~g~~~~~~~~  178 (186)
T 1z1y_A          169 TFDXEXNVCL  178 (186)
T ss_dssp             EEETTTTEEE
T ss_pred             ccCcccccCC
Confidence            9999987643

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*

Probab=99.75  E-value=5.4e-18  Score=185.11  Aligned_cols=115  Identities=18%  Similarity=0.234  Sum_probs=76.6

Q ss_pred             CCCCCCeecccCCCCCceeeecCCCCCCCCCccCccCCCCCCccCCCceeeecCCCcEEcCCCCCCCCCcccccccceee
Q psy9228         575 PCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDSYECLCSLGYAPPNCAKRVSIGSEV  654 (834)
Q Consensus       575 pC~ngg~C~~~~~~~~~~~C~C~~G~~G~~Ce~~~~~C~~~~pC~ngg~C~~~~~~~~C~C~~g~~G~~Ce~~~~~~~~~  654 (834)
                      ||.|+|+|...      +.|.|++||+|.+||....+...  |.     +.+  ..-.|.|.+||.|+.|+...      
T Consensus       294 ~C~ngg~C~~~------~~C~C~~G~~G~~Ce~~~~~~~~--~~-----~~~--~~~~~~c~~g~~g~~C~~~~------  352 (423)
T 2gy5_A          294 SCNNGEMCDRF------QGCLCSPGWQGLQCEREGIPRMT--PK-----IVD--LPDHIEVNSGKFNPICKASG------  352 (423)
T ss_dssp             CCTTCCEEETT------TEEECCTTCBSTTSCBCSSCCCC--CE-----ECS--CCSBCCEESEEECCEEEEEC------
T ss_pred             cCCCCCEecCC------CceECCCCCcCCCCccCccCCcC--cc-----eec--CCCeEEeCCCccCCcccccC------
Confidence            68899999764      34999999999999976433211  21     111  12337778888887775210      


Q ss_pred             EEcCCceeeechhhhhhccCcceEEEEEEeCCCCeeEEecCCCCCCCCCCcceEEEEEECCEEEEEEEcCCcEEEEEeCC
Q psy9228         655 HFLGEGYVELKKELIEERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSK  734 (834)
Q Consensus       655 ~F~g~s~~~~~~~~~~~~~~~~~i~~~frT~~~~GlLl~~~~~~~~~~~~~~~~~l~l~~G~l~~~~~~g~~~~~l~~s~  734 (834)
                            .      ..   .....  +.|  .+++|++||.+...     ..||++|+|.+|+++++|++|+....+..+.
T Consensus       353 ------~------~~---~~~~~--~~~--~~~~G~cl~~~~~~-----~~d~ial~l~~G~v~~syd~G~~~~~v~t~~  408 (423)
T 2gy5_A          353 ------W------PL---PTNEE--MTL--VKPDGTVLHPKDFN-----HTDHFSVAIFTIHRILPPDSGVWVCSVNTVA  408 (423)
T ss_dssp             ------T------TC---CCGGG--EEE--ECTTSCEECCSEEE-----ECSSCEEEECCEEEECGGGCEEEEEEEEETT
T ss_pred             ------C------cC---CCCce--EEE--ECCCeEEEeCCCcC-----cccceeeeEEeeeEEEeecCCCcceEEEecC
Confidence                  0      00   01122  333  47899999987532     3699999999999999999988777666444

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*

Probab=99.74  E-value=3.6e-18  Score=156.77  Aligned_cols=107  Identities=28%  Similarity=0.652  Sum_probs=95.6

Q ss_pred             CceeEEEcCCcceeeeeCCcccCCCcceeeeeCCCCCCCcCCCCccCCCCccceEEEEEEcCEEEEeecccccccCCCCC
Q psy9228          56 VERMMFVDGIGPFSGESQGAFQGLDLSELVYIGAVPDFGEIHPSAGFSNGFKGCVSRLKYNKTEFELFKMAVERVGVDSC  135 (834)
Q Consensus        56 ~~g~~cvd~~~~~~~~~~~~~~g~~~~~~~~~gg~p~~~~~~~~~~~~~gf~gCi~~~~~~~~~~~~~~~~~~~~~~~~c  135 (834)
                      .++++|++..+.|+|.|++||+|..|+.++                                                  
T Consensus        16 ~~~g~C~~~~g~~~C~C~~Gy~G~~C~~~~--------------------------------------------------   45 (135)
T 2vj3_A           16 EHAGKCINTLGSFECQCLQGYTGPRCEIDV--------------------------------------------------   45 (135)
T ss_dssp             STTCEEEECSSSEEEECCTTEESTTSCEEC--------------------------------------------------
T ss_pred             CCCCEeECCCCCEEEECCCCCcCCcccccC--------------------------------------------------
Confidence            577899999999999999999987665332                                                  


Q ss_pred             CccCCCCCCCCCCCCEeccCCCCCceEeeCCCCCCCCCCCCCCCCccCCCCCC-CeeecCCCCeEEeCCCCcccCccccc
Q psy9228         136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGD-GSCQDVDGAMKCLCPIGTAGKRCEQK  214 (834)
Q Consensus       136 ~~C~~~~~~pC~n~g~C~~~~~~~~~~C~C~~g~~G~~Ce~~~~~C~~~~C~~-g~C~~~~~~~~C~C~~g~~G~~Ce~~  214 (834)
                      ++|.   .+||.|+|+|++..  ++|+|.|++||+|.+|+.++++|.++||.+ |+|++..++|+|.|++||+|..||.+
T Consensus        46 ~~C~---~~~C~~~~~C~~~~--g~~~C~C~~G~~G~~C~~~~~~C~~~~C~~~g~C~~~~g~~~C~C~~G~~G~~C~~~  120 (135)
T 2vj3_A           46 NECV---SNPCQNDATCLDQI--GEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQVD  120 (135)
T ss_dssp             CTTT---TCCCCSSCEEEECS--SCEEEECCTTEESSSSCEECCTTTTCCSTTTCEEEECSSCEEEECCTTEESSSSCEE
T ss_pred             ccCC---CCCCCCCCEEeCCC--CCceeeCCCCCcCCcceecCCcccCCCcCCCCEeECCCCCeEEECCCCCcCCccCcc
Confidence            4677   89999999999976  889999999999999999999999999996 89999999999999999999999977


Q ss_pred             ccc
Q psy9228         215 IKI  217 (834)
Q Consensus       215 ~~~  217 (834)
                      ++.
T Consensus       121 i~~  123 (135)
T 2vj3_A          121 LHH  123 (135)
T ss_dssp             CC-
T ss_pred             Ccc
Confidence            543

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*

Probab=99.74  E-value=6e-18  Score=155.32  Aligned_cols=74  Identities=30%  Similarity=0.813  Sum_probs=67.0

Q ss_pred             CccCCCCCCCCCCCCEeccCCCCCceEeeCCCCCCCCCCCCCCCCccCCCCCC-CeeecCCCCeEEeCCCCcccCccc
Q psy9228         136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGD-GSCQDVDGAMKCLCPIGTAGKRCE  212 (834)
Q Consensus       136 ~~C~~~~~~pC~n~g~C~~~~~~~~~~C~C~~g~~G~~Ce~~~~~C~~~~C~~-g~C~~~~~~~~C~C~~g~~G~~Ce  212 (834)
                      |+|. ...+||.|+|+|++..  ++|+|.|++||+|.+|+.++++|..+||.+ ++|++..++|+|.|++||+|..|+
T Consensus         6 deC~-~~~~~C~~~g~C~~~~--g~~~C~C~~Gy~G~~C~~~~~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~G~~C~   80 (135)
T 2vj3_A            6 DECS-LGANPCEHAGKCINTL--GSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCE   80 (135)
T ss_dssp             CTTT-SSSCSSSTTCEEEECS--SSEEEECCTTEESTTSCEECCTTTTCCCCSSCEEEECSSCEEEECCTTEESSSSC
T ss_pred             cccc-CCCCCCCCCCEeECCC--CCEEEECCCCCcCCcccccCccCCCCCCCCCCEEeCCCCCceeeCCCCCcCCcce
Confidence            5675 2358999999999986  889999999999999999999999999996 899999999999999999998885

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}

Probab=99.68  E-value=5.3e-17  Score=151.20  Aligned_cols=117  Identities=32%  Similarity=0.657  Sum_probs=93.2

Q ss_pred             CceeEEEcCC--cceeeeeCCcccCCCcceeeeeCCCCCCCcCCCCccCCCCccceEEEEEEcCEEEEeecccccccCCC
Q psy9228          56 VERMMFVDGI--GPFSGESQGAFQGLDLSELVYIGAVPDFGEIHPSAGFSNGFKGCVSRLKYNKTEFELFKMAVERVGVD  133 (834)
Q Consensus        56 ~~g~~cvd~~--~~~~~~~~~~~~g~~~~~~~~~gg~p~~~~~~~~~~~~~gf~gCi~~~~~~~~~~~~~~~~~~~~~~~  133 (834)
                      .++++|++..  +.|+|.|++||+|..|+..+..               .....+|                       .
T Consensus         9 ~~~g~C~~~~~~g~~~C~C~~G~~G~~C~~~~~~---------------~~~~~~c-----------------------~   50 (143)
T 4d90_A            9 ENGGICLPGLADGSFSCECPDGFTDPNCSSVVEV---------------ASDEEEP-----------------------T   50 (143)
T ss_dssp             GGGCEEEC-----CCEEECCTTCCTTTTCSCCCC---------------TTTTTSC-----------------------C
T ss_pred             CCCCEeeCCCCCCCEEeECCCCCCCCCCccCccc---------------ccccccc-----------------------c
Confidence            5788999876  5799999999999988753310               0000111                       1


Q ss_pred             CCCccCCCCCCCCCCCCEec-------cCCCCCceEeeCCCCCCCCCCCCCCCCccCCCCCC-CeeecCCCCeEEeCCCC
Q psy9228         134 SCNTCKSSKHNNCINNGLCQ-------DAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGD-GSCQDVDGAMKCLCPIG  205 (834)
Q Consensus       134 ~c~~C~~~~~~pC~n~g~C~-------~~~~~~~~~C~C~~g~~G~~Ce~~~~~C~~~~C~~-g~C~~~~~~~~C~C~~g  205 (834)
                      .-++|.   ++||.|+|+|+       +..  ++|+|.|++||+|.+|+.++++|..+||.+ |+|++..++|+|.|++|
T Consensus        51 ~~~~C~---~~~C~~~g~C~~~~~~~~~~~--~~~~C~C~~G~~G~~C~~~i~~C~~~~C~~~~~C~~~~g~~~C~C~~G  125 (143)
T 4d90_A           51 SAGPCT---PNPCHNGGTCEISEAYRGDTF--IGYVCKCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCECPGE  125 (143)
T ss_dssp             CCCTTS---SCCCCTTCEEEECCCEETTEE--CCEEEECCTTEESTTSCEECCTTTTCCSCTTCEEEEETTEEEEECCTT
T ss_pred             cCCcCC---CCCCCCCCEecCCCccccCCC--CCeEeECcCCCcCCCcccCCCcCCCCCCCCCCEeECCCCCeEeECCCC
Confidence            115788   89999999999       443  789999999999999999999999999996 89999999999999999


Q ss_pred             cccCcccccc
Q psy9228         206 TAGKRCEQKI  215 (834)
Q Consensus       206 ~~G~~Ce~~~  215 (834)
                      |+|++|+...
T Consensus       126 ~~G~~c~~~~  135 (143)
T 4d90_A          126 FMGRNCQYKG  135 (143)
T ss_dssp             CBSTTSCBC-
T ss_pred             CccCCceecC
Confidence            9999998763

>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A*

Probab=99.64  E-value=5e-19  Score=176.10  Aligned_cols=49  Identities=10%  Similarity=0.121  Sum_probs=39.4

Q ss_pred             CCCCCCccCccCCCCCCccCCCceeeecCCCcEEcCCCCCCCCCccccccc
Q psy9228         600 YSGDHCEKENNMCMKGDVCKNGGMCKVTPDSYECLCSLGYAPPNCAKRVSI  650 (834)
Q Consensus       600 ~~G~~Ce~~~~~C~~~~pC~ngg~C~~~~~~~~C~C~~g~~G~~Ce~~~~~  650 (834)
                      +.|.+|+..++ |.+. ||+|+|+|++..++|+|.|++||+|..|+.+++.
T Consensus       158 ~~G~~c~~~i~-c~~~-~c~ngg~C~dg~~~y~C~Cp~Gf~G~~c~~~i~e  206 (267)
T 4fbr_A          158 VLGTRGKQNVI-NVDA-KSNDGGKTLSGTMTYNGEGPIGFRGTLTSPDTYT  206 (267)
T ss_dssp             ECCSSTTSCEE-EEEE-ECSSTTSEEEEEEEETTSCCEEEEEEEEETTEEE
T ss_pred             ecccccccccc-cCCC-CCCCCCEeeCCCCCeEEeCCCCccccccccccce
Confidence            34555555543 3344 8999999999999999999999999999998875

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}

Probab=99.62  E-value=2.4e-16  Score=166.18  Aligned_cols=63  Identities=37%  Similarity=0.896  Sum_probs=0.0

Q ss_pred             CCCCCCCeecccCCCCCceeeecCCCCCCCCCccCccCCCCCCccCCCceeeecCCCcEEcCCCCCCCCCcccccc
Q psy9228         574 KPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDSYECLCSLGYAPPNCAKRVS  649 (834)
Q Consensus       574 ~pC~ngg~C~~~~~~~~~~~C~C~~G~~G~~Ce~~~~~C~~~~pC~ngg~C~~~~~~~~C~C~~g~~G~~Ce~~~~  649 (834)
                      +||.|+|+|..      .++|.|++||+|..|+.  +.|. . +|.++|+|.+   .++|.|++||+|++||....
T Consensus       249 ~~C~~~g~C~~------~~~C~C~~G~~G~~C~~--~~C~-~-~C~~~g~C~~---~~~C~C~~G~~G~~C~~~~~  311 (324)
T 2ygq_A          249 QPCRNGGKCIG------KSKCKCSKGYQGDLCSK--PVCE-P-GCGAHGTCHE---PNKCQCQEGWHGRHCNKRYE  311 (324)
T ss_dssp             ----------------------------------------------------------------------------
T ss_pred             CcCCCCCEECC------CCEEECCCCCcCCCCcC--CCCC-C-CCCCCCEECC---CCEeECCCCCcCCCCCCCCc
Confidence            68999999973      68999999999999995  4686 4 9999999986   68999999999999997754

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A

Probab=99.53  E-value=2.3e-15  Score=143.62  Aligned_cols=64  Identities=42%  Similarity=1.014  Sum_probs=56.5

Q ss_pred             CCCCCeecccCCCCCceeeecCCCCCCCCCccCccCCCCCCccCCCceeeec-CCCcEEcCCCCCCCCCccc
Q psy9228         576 CQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVT-PDSYECLCSLGYAPPNCAK  646 (834)
Q Consensus       576 C~ngg~C~~~~~~~~~~~C~C~~G~~G~~Ce~~~~~C~~~~pC~ngg~C~~~-~~~~~C~C~~g~~G~~Ce~  646 (834)
                      |.|| +|+   .   .|+|.|++||+|..|+.++++|....||.|+|+|++. .++|+|.|++||+|.+||.
T Consensus       105 C~~g-~C~---~---~~~C~C~~G~~G~~C~~~~~~C~~~~~C~~~g~C~~~~~~~~~C~C~~G~~G~~Ce~  169 (169)
T 2vj2_A          105 CVHG-ICN---E---PWQCLCETNWGGQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGPNCEI  169 (169)
T ss_dssp             CSSE-ECS---S---TTCCEECTTEETTTTCEESCHHHHTCCCCTTCEEEECSTTCEEEECCTTCCSTTSCC
T ss_pred             CCCC-CcC---C---CCEEeCCCCCCCCcccCCCCCCCCCCCCCCCCEEcCCCCCCcEeECCCCCcCcCcCC
Confidence            6665 777   2   7999999999999999999999863399999999996 7899999999999999973

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A

Probab=99.51  E-value=9.2e-15  Score=123.08  Aligned_cols=64  Identities=30%  Similarity=0.633  Sum_probs=57.1

Q ss_pred             CCCCCCCCEeccCCCCCceEeeCCCCCCCCCCC-CCCCCccCCCCCC-CeeecCC--CCeEEeCCCCcccCccccccc
Q psy9228         143 HNNCINNGLCQDAATRIGYTCICPPGFSGDRCS-VLGEPCYPGACGD-GSCQDVD--GAMKCLCPIGTAGKRCEQKIK  216 (834)
Q Consensus       143 ~~pC~n~g~C~~~~~~~~~~C~C~~g~~G~~Ce-~~~~~C~~~~C~~-g~C~~~~--~~~~C~C~~g~~G~~Ce~~~~  216 (834)
                      .+||.|+      .  ++|+|.|++||+  +|| .++++|.++||+| |+|++..  ++|.|.|++||+|++||.+++
T Consensus        22 ~~pC~n~------~--~~y~C~C~~G~~--~C~~~~~~~C~~~pC~ngg~C~~~~~~~~~~C~C~~G~~G~~Ce~~id   89 (91)
T 1tpg_A           22 LRPVLRS------N--RVEYCWCNSGRA--QCHSVPVKSCSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEIDTR   89 (91)
T ss_dssp             EEECSSS------S--CEEEEECSSSCC--BCCEECEEECSSCCSCTTCEEEEESSSSCEEEECCTTCBSSSCCBCSS
T ss_pred             CCccccC------C--CCcEeECCCCCc--ccccCcCCcccCCCCCCCCEeecCCCCCCeEeECCCCCcCCcCCcCCC
Confidence            6788775      2  789999999998  998 6899999999997 7999987  999999999999999998754

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A

Probab=99.50  E-value=1e-14  Score=142.00  Aligned_cols=127  Identities=19%  Similarity=0.384  Sum_probs=99.9

Q ss_pred             CeeEEEEEcCCCCccCCcEEE-Ec-----------CceeEEEcCC-----cceeeeeCCcccCCCcceeeeeCCCCCCCc
Q psy9228          33 SGKYKCEIQGHDSFRGSDYVK-LN-----------VERMMFVDGI-----GPFSGESQGAFQGLDLSELVYIGAVPDFGE   95 (834)
Q Consensus        33 ~g~y~c~~~~~~~~~~~~~~~-~~-----------~~g~~cvd~~-----~~~~~~~~~~~~g~~~~~~~~~gg~p~~~~   95 (834)
                      .|.|.|.|..++....+..|+ ++           .++++|++..     +.|+|.|++||+|..+.             
T Consensus        22 ~g~~~C~C~~G~~g~~~~~C~~id~C~~~~~~~~C~~~~~C~~~~~~~~~g~y~C~C~~G~~g~~~~-------------   88 (186)
T 1z1y_A           22 SNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIENPDPAQVNMYXCGCIEGYTLXEDT-------------   88 (186)
T ss_dssp             SSCEEEEECTTEEEEETTEEEECCCCSGGGTTSEEETTEEEEECSSTTSSCSEEEEECTTEEEETTE-------------
T ss_pred             CCCeEeECCCCCccCCCCccCCCCcccCCCCCCCCCCCCEeecCCCCcCCCCEECCCCCCCccCCCC-------------
Confidence            578999995544311133564 22           3568999998     89999999999875332             


Q ss_pred             CCCCccCCCCccceEEEEEEcCEEEEeecccccccCCCCCCccCCCCCCCCCCCCEec----cCCCCCceEeeCCCCCCC
Q psy9228          96 IHPSAGFSNGFKGCVSRLKYNKTEFELFKMAVERVGVDSCNTCKSSKHNNCINNGLCQ----DAATRIGYTCICPPGFSG  171 (834)
Q Consensus        96 ~~~~~~~~~gf~gCi~~~~~~~~~~~~~~~~~~~~~~~~c~~C~~~~~~pC~n~g~C~----~~~~~~~~~C~C~~g~~G  171 (834)
                                   |.    +                    ++|.   .+||.|+|+|+    +..  ++|+|.|++||+|
T Consensus        89 -------------C~----~--------------------d~C~---~~~C~~~g~C~~~~~~~~--g~~~C~C~~Gy~g  126 (186)
T 1z1y_A           89 -------------CV----L--------------------DVCQ---YXNCGESGECIVEYLSEI--QSAGCSCAIGXVP  126 (186)
T ss_dssp             -------------EE----E--------------------GGGT---TCCCCTTEEEEEEEETTE--EEEEEEECTEEEE
T ss_pred             -------------CC----C--------------------CcCc---CCCCCCCCEEeeCCcCCC--CCceEECCCCCcc
Confidence                         11    0                    4688   89999999999    654  7899999999998


Q ss_pred             -----CCCCCC-CCCccCCCC-CC-CeeecCCCCeEEeCCCCcccCcccccc
Q psy9228         172 -----DRCSVL-GEPCYPGAC-GD-GSCQDVDGAMKCLCPIGTAGKRCEQKI  215 (834)
Q Consensus       172 -----~~Ce~~-~~~C~~~~C-~~-g~C~~~~~~~~C~C~~g~~G~~Ce~~~  215 (834)
                           ..|+.. +++|. +|| .+ ++|++..++|+|.|++||+|..|+...
T Consensus       127 ~~~~~~~C~~~~~~~C~-~~C~~~~~~C~n~~g~y~C~C~~G~~g~~~~~~~  177 (186)
T 1z1y_A          127 NPEDEXXCTXTGETACQ-LXCNTDNEVCXNVEGVYXCQCMEGFTFDXEXNVC  177 (186)
T ss_dssp             ETTTTTEEEEEECCCCC-CCCCTTTEEEEEETTEEEEEECTTCEEETTTTEE
T ss_pred             cCCCCCcceEcCCCccc-ccccccCcceecCCCCeeeECCCCCccCcccccC
Confidence                 889764 79998 499 75 799999999999999999999998763

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*

Probab=99.50  E-value=2.4e-14  Score=164.02  Aligned_cols=69  Identities=29%  Similarity=0.752  Sum_probs=60.7

Q ss_pred             ccCCCCCCCCCCCCEeccCCCCCceE---eeCCCCCCCCCCCCCC--------CCccCC----CCC-CCeeecCCCCeEE
Q psy9228         137 TCKSSKHNNCINNGLCQDAATRIGYT---CICPPGFSGDRCSVLG--------EPCYPG----ACG-DGSCQDVDGAMKC  200 (834)
Q Consensus       137 ~C~~~~~~pC~n~g~C~~~~~~~~~~---C~C~~g~~G~~Ce~~~--------~~C~~~----~C~-~g~C~~~~~~~~C  200 (834)
                      +|.   ++||.|+++|.+..  +.|.   |.|++||+|.+||..+        ++|...    +|. +|+|++    +.|
T Consensus       436 ~C~---~~pc~n~~~C~~g~--G~~~~G~C~C~~Gy~G~~Ce~~~~~~~~~~~~~C~~~~~~~~Cs~~G~C~~----g~C  506 (690)
T 3fcs_B          436 ACQ---AQAEPNSHRCNNGN--GTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGECLC----GQC  506 (690)
T ss_dssp             GGG---TTCCTTCTTTTTTS--EEEETTEEEECTTCCSSSSCCSCC------CCCCSSSSSSCGGGGSEEECS----SSE
T ss_pred             CCc---CCCCCCCCcccCCC--CeEeCCceEeCCCccCCceeeccCccCCccCCcCCCCCCCCCCCCCCEEEC----Cee
Confidence            788   99999999999755  7888   9999999999999876        889874    598 489984    699


Q ss_pred             eCC----CCcccCccccc
Q psy9228         201 LCP----IGTAGKRCEQK  214 (834)
Q Consensus       201 ~C~----~g~~G~~Ce~~  214 (834)
                      .|+    +||+|..||.+
T Consensus       507 ~C~~~~~~Gy~G~~Ce~~  524 (690)
T 3fcs_B          507 VCHSSDFGKITGKYCECD  524 (690)
T ss_dssp             EECCCSSCCCBSTTSCBC
T ss_pred             EeecCCCCCeeCCCcCcc
Confidence            999    99999999865

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*

Probab=99.47  E-value=5.2e-14  Score=161.24  Aligned_cols=105  Identities=20%  Similarity=0.426  Sum_probs=81.2

Q ss_pred             CceeEEEcCCccee---eeeCCcccCCCcceeeeeCCCCCCCcCCCCccCCCCccceEEEEEEcCEEEEeecccccccCC
Q psy9228          56 VERMMFVDGIGPFS---GESQGAFQGLDLSELVYIGAVPDFGEIHPSAGFSNGFKGCVSRLKYNKTEFELFKMAVERVGV  132 (834)
Q Consensus        56 ~~g~~cvd~~~~~~---~~~~~~~~g~~~~~~~~~gg~p~~~~~~~~~~~~~gf~gCi~~~~~~~~~~~~~~~~~~~~~~  132 (834)
                      .|+++|.|+.+.+.   |.|++||+|.+|+..+  +...                                        .
T Consensus       443 ~n~~~C~~g~G~~~~G~C~C~~Gy~G~~Ce~~~--~~~~----------------------------------------~  480 (690)
T 3fcs_B          443 PNSHRCNNGNGTFECGVCRCGPGWLGSQCECSE--EDYR----------------------------------------P  480 (690)
T ss_dssp             TTCTTTTTTSEEEETTEEEECTTCCSSSSCCSC--C--------------------------------------------
T ss_pred             CCCCcccCCCCeEeCCceEeCCCccCCceeecc--CccC----------------------------------------C
Confidence            47888988888888   9999999999997543  1000                                        0


Q ss_pred             CCCCccCC-CCCCCCCCCCEeccCCCCCceEeeCC----CCCCCCCCCCCCCCccC---CCCC-CCeeecCCCCeEEeCC
Q psy9228         133 DSCNTCKS-SKHNNCINNGLCQDAATRIGYTCICP----PGFSGDRCSVLGEPCYP---GACG-DGSCQDVDGAMKCLCP  203 (834)
Q Consensus       133 ~~c~~C~~-~~~~pC~n~g~C~~~~~~~~~~C~C~----~g~~G~~Ce~~~~~C~~---~~C~-~g~C~~~~~~~~C~C~  203 (834)
                      ...+.|.. ....+|.|+|+|.+      ++|.|+    +||+|.+||.+.++|..   .+|. +|+|.+    +.|.|+
T Consensus       481 ~~~~~C~~~~~~~~Cs~~G~C~~------g~C~C~~~~~~Gy~G~~Ce~~~~~C~~~~~~~C~~~G~C~~----g~C~C~  550 (690)
T 3fcs_B          481 SQQDECSPREGQPVCSQRGECLC------GQCVCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSC----GDCLCD  550 (690)
T ss_dssp             --CCCCSSSSSSCGGGGSEEECS------SSEEECCCSSCCCBSTTSCBCSSCCCBSSSSBGGGSEEEET----TEEEEC
T ss_pred             ccCCcCCCCCCCCCCCCCCEEEC------CeeEeecCCCCCeeCCCcCcccCcCcCCCCCCCCCCCEecC----CeeECc
Confidence            00123431 01367999999984      589999    99999999999999997   5898 589987    899999


Q ss_pred             CCcccCccc
Q psy9228         204 IGTAGKRCE  212 (834)
Q Consensus       204 ~g~~G~~Ce  212 (834)
                      +||+|..|+
T Consensus       551 ~Gy~G~~Ce  559 (690)
T 3fcs_B          551 SDWTGYYCN  559 (690)
T ss_dssp             TTEESSSSC
T ss_pred             CCCcCCCCc
Confidence            999999996

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*

Probab=99.47  E-value=9.4e-14  Score=156.46  Aligned_cols=71  Identities=28%  Similarity=0.724  Sum_probs=64.5

Q ss_pred             CccCCCCCCCCCCCCEeccCCCCCc-eEe-eCCCCCCC--CCCCCCCCCccCCC--CCC-C---eeecCCCCeEEe-CCC
Q psy9228         136 NTCKSSKHNNCINNGLCQDAATRIG-YTC-ICPPGFSG--DRCSVLGEPCYPGA--CGD-G---SCQDVDGAMKCL-CPI  204 (834)
Q Consensus       136 ~~C~~~~~~pC~n~g~C~~~~~~~~-~~C-~C~~g~~G--~~Ce~~~~~C~~~~--C~~-g---~C~~~~~~~~C~-C~~  204 (834)
                      ++|.   ++||.++++|++..  ++ |+| .|++||+|  .+|+ ++++|..+|  |.+ +   +|++..++|+|. |++
T Consensus         4 DeC~---~nPC~~gg~C~n~~--~Gsy~C~~C~~GytGdg~~Ce-DiDEC~~~p~~C~~gg~~~~CvNt~gsY~C~~C~~   77 (634)
T 1yo8_A            4 DGCL---SNPCFPGAQCSSFP--DGSWSCGFCPVGFLGNGTHCE-DLDECALVPDICFSTSKVPRCVNTQPGFHCLPCPP   77 (634)
T ss_dssp             CGGG---GCCSCTTCCEEECT--TSCEEECCCCTTBCSCSSSCC-BCCTTTTSCCCSCCCSSSCCEEECSSSEEECCCCT
T ss_pred             cccC---CCCCCCCCEEecCC--CCCeECCcCCCccCCCCCCcc-ccccccCCCCcccCCccccceeeccCceecccCCC
Confidence            5788   99999999999876  44 999 99999998  8996 899999988  996 6   899999999999 999


Q ss_pred             CcccCccc
Q psy9228         205 GTAGKRCE  212 (834)
Q Consensus       205 g~~G~~Ce  212 (834)
                      ||+|..|+
T Consensus        78 Gy~G~~c~   85 (634)
T 1yo8_A           78 RYRGNQPV   85 (634)
T ss_dssp             TEEECCCE
T ss_pred             CcccCccc
Confidence            99999885

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A

Probab=99.44  E-value=4.4e-14  Score=134.65  Aligned_cols=148  Identities=15%  Similarity=0.329  Sum_probs=94.4

Q ss_pred             CCCCCeeEEEEEcCCCCccCCcEEEEc-------CceeEEEcCCcceeeeeCCcccCCCcceeeeeCCCCCCCcCC-CCc
Q psy9228          29 RLQDSGKYKCEIQGHDSFRGSDYVKLN-------VERMMFVDGIGPFSGESQGAFQGLDLSELVYIGAVPDFGEIH-PSA  100 (834)
Q Consensus        29 ~~~d~g~y~c~~~~~~~~~~~~~~~~~-------~~g~~cvd~~~~~~~~~~~~~~g~~~~~~~~~gg~p~~~~~~-~~~  100 (834)
                      .......|.|++..+  |. |+.|+..       ..++.|+.   ...|.|+++|+|.+|+..+...+      +. ...
T Consensus        10 ~~~~~~~~~c~C~~g--~~-G~~C~~~C~~~~~c~~~g~C~~---~g~C~C~~G~~G~~C~~~~C~~~------C~~~~g   77 (169)
T 2vj2_A           10 HGSIEGRSAVTCDDY--YY-GFGCNKFCRPRDDFFGHYACDQ---NGNKTCMEGWMGPECNRAICRQG------CSPKHG   77 (169)
T ss_dssp             -----------CCTT--EE-TTTTCEECCCEEETTEEEEECS---SCCEEECTTEESTTSCEECCCTT------CCTTTE
T ss_pred             ccccccCeeeeCCCc--Cc-CCCcccccCCCCCcCCCCEeCC---CCeeECCCCCcCCCCCCCCCCCC------CCCCCc
Confidence            345667888988554  43 3334321       34567742   56789999999999987542211      11 001


Q ss_pred             cCCCCccceEEEEEEcCEEEEeecccccccCCCCCCccCCCCCCC-CCCCCEeccCCCCCceEeeCCCCCCCCCCCCCCC
Q psy9228         101 GFSNGFKGCVSRLKYNKTEFELFKMAVERVGVDSCNTCKSSKHNN-CINNGLCQDAATRIGYTCICPPGFSGDRCSVLGE  179 (834)
Q Consensus       101 ~~~~gf~gCi~~~~~~~~~~~~~~~~~~~~~~~~c~~C~~~~~~p-C~n~g~C~~~~~~~~~~C~C~~g~~G~~Ce~~~~  179 (834)
                      .+...| -|.+.               ..+....|++|.   .+| |.|+ +|+     ..|+|.|++||+|.+|+.+++
T Consensus        78 ~C~~~~-~C~C~---------------~G~~G~~C~~C~---~~~~C~~g-~C~-----~~~~C~C~~G~~G~~C~~~~~  132 (169)
T 2vj2_A           78 SCKLPG-DCRCQ---------------YGWQGLYCDKCI---PHPGCVHG-ICN-----EPWQCLCETNWGGQLCDKDLN  132 (169)
T ss_dssp             ECSSTT-CCEEC---------------TTEESSSSCEEC---CCTTCSSE-ECS-----STTCCEECTTEETTTTCEESC
T ss_pred             ccCCCC-eeECC---------------CCCCCCCcccCC---CCCCCCCC-CcC-----CCCEEeCCCCCCCCcccCCCC
Confidence            111111 13221               122235677888   777 9876 998     468999999999999999999


Q ss_pred             CccC-CCCCC-CeeecC-CCCeEEeCCCCcccCcccc
Q psy9228         180 PCYP-GACGD-GSCQDV-DGAMKCLCPIGTAGKRCEQ  213 (834)
Q Consensus       180 ~C~~-~~C~~-g~C~~~-~~~~~C~C~~g~~G~~Ce~  213 (834)
                      +|.. .||.+ |+|++. .++|+|.|++||+|++||+
T Consensus       133 ~C~~~~~C~~~g~C~~~~~~~~~C~C~~G~~G~~Ce~  169 (169)
T 2vj2_A          133 YCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGPNCEI  169 (169)
T ss_dssp             HHHHTCCCCTTCEEEECSTTCEEEECCTTCCSTTSCC
T ss_pred             CCCCCCCCCCCCEEcCCCCCCcEeECCCCCcCcCcCC
Confidence            9986 89996 899996 7899999999999999974

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*

Probab=99.44  E-value=6.1e-14  Score=153.09  Aligned_cols=210  Identities=20%  Similarity=0.347  Sum_probs=131.2

Q ss_pred             eEEEcccCCCCCeeEEEEEcCCCCcc-------------C--CcEEEEc----CceeEEEcCCcceeeeeCCcccCCCcc
Q psy9228          22 VLRITNARLQDSGKYKCEIQGHDSFR-------------G--SDYVKLN----VERMMFVDGIGPFSGESQGAFQGLDLS   82 (834)
Q Consensus        22 ~l~~~~~~~~d~g~y~c~~~~~~~~~-------------~--~~~~~~~----~~g~~cvd~~~~~~~~~~~~~~g~~~~   82 (834)
                      .+.+++++..|+|.|.|.+.++..|.             +  |+.|+..    .++++|++  ..+.|.|+++|+|.+|+
T Consensus       153 ~~~~~~~~~~d~g~y~~~~~~g~~~~~~~~~~~~c~C~~g~~G~~C~~~C~~C~~~G~C~~--~~g~C~C~~G~~G~~Ce  230 (423)
T 2gy5_A          153 EVHLPHAQPQDAGVYSARYIGGNLFTSAFTRLIVRRCEAQKWGPECNHLCTACMNNGVCHE--DTGECICPPGFMGRTCE  230 (423)
T ss_dssp             EEEETTCCGGGCEEEEEEETTCCGGGCEEEEEEECSSCTTEESTTSCEECCCCCTTCEECT--TTCCEECCTTEESTTSC
T ss_pred             EeccCcCCCCCCCeEeeEECCCcEeccccccccCCcCCCCCCCCCCCCCCCCCCCCCEEEC--CCCcEeCCCCccCCCcc
Confidence            35668999999999999887664321             0  2233221    35556655  34566666666666665


Q ss_pred             eeeeeCCCCCCCcCCCCccCCCCccceEEEEEEcCEEEEeecccccccCCCCC-CccCCCCCCCCCCCCEeccCCCCCce
Q psy9228          83 ELVYIGAVPDFGEIHPSAGFSNGFKGCVSRLKYNKTEFELFKMAVERVGVDSC-NTCKSSKHNNCINNGLCQDAATRIGY  161 (834)
Q Consensus        83 ~~~~~gg~p~~~~~~~~~~~~~gf~gCi~~~~~~~~~~~~~~~~~~~~~~~~c-~~C~~~~~~pC~n~g~C~~~~~~~~~  161 (834)
                      ...                 ..+|.|                        ..| +.|..  .++|.++++|..    ++|
T Consensus       231 ~~C-----------------~~g~~g------------------------~~C~~~C~~--~~~C~~~g~C~~----~~~  263 (423)
T 2gy5_A          231 KAC-----------------ELHTFG------------------------RTCKERCSG--QEGCKSYVFCLP----DPY  263 (423)
T ss_dssp             EEC-----------------CTTEES------------------------TTSCEECCS--TTTTTTCCEEET----TTT
T ss_pred             ccc-----------------CCCCCC------------------------CCcCccCCC--CCCCCCCCEECC----CCC
Confidence            432                 111111                        123 24541  578999999964    679


Q ss_pred             EeeCCCCCCCCCCCCCC------CCccC-CCCCC-CeeecCCCCeEEeCCCCcccCcccccccc-cccCC-CCcceEEcC
Q psy9228         162 TCICPPGFSGDRCSVLG------EPCYP-GACGD-GSCQDVDGAMKCLCPIGTAGKRCEQKIKI-LQPAF-KHGSYLAYP  231 (834)
Q Consensus       162 ~C~C~~g~~G~~Ce~~~------~~C~~-~~C~~-g~C~~~~~~~~C~C~~g~~G~~Ce~~~~~-~~~~F-~g~~y~~~~  231 (834)
                      +|.|++||+|.+|+..-      +.|.. -+|.+ |+|.+..   .|.|++||+|.+||..... ..+.| ...+|+.+.
T Consensus       264 ~C~C~~G~~G~~C~~~C~~G~~G~~C~~~C~C~ngg~C~~~~---~C~C~~G~~G~~Ce~~~~~~~~~~~~~~~~~~~c~  340 (423)
T 2gy5_A          264 GCSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMCDRFQ---GCLCSPGWQGLQCEREGIPRMTPKIVDLPDHIEVN  340 (423)
T ss_dssp             EEECCBTCBSGGGCBCCCTTBCSBTTCCBCCCTTCCEEETTT---EEECCTTCBSTTSCBCSSCCCCCEECSCCSBCCEE
T ss_pred             eEEeCCCcccccccCccCCCCcCCcccccccCCCCCEecCCC---ceECCCCCcCCCCccCccCCcCcceecCCCeEEeC
Confidence            99999999999998621      23332 27886 7998764   3999999999999986321 12223 223333222


Q ss_pred             CCCCc---------ceEEEEEEEcccCCCceEEEeecccCCCCCCeEEEEEecCeEEEEEecCCCc
Q psy9228         232 TPKTM---------RKFKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKHMEFRFDTGSAT  288 (834)
Q Consensus       232 ~~~~~---------~~~~i~l~f~t~~~~~glll~~~~~~~~~~d~~~l~l~~G~v~~~~~~g~~~  288 (834)
                      .....         ....+++.|.   ..+|+++|.+...  ..||++|+|.+|++++++++|+..
T Consensus       341 ~g~~g~~C~~~~~~~~~~~~~~~~---~~~G~cl~~~~~~--~~d~ial~l~~G~v~~syd~G~~~  401 (423)
T 2gy5_A          341 SGKFNPICKASGWPLPTNEEMTLV---KPDGTVLHPKDFN--HTDHFSVAIFTIHRILPPDSGVWV  401 (423)
T ss_dssp             SEEECCEEEEECTTCCCGGGEEEE---CTTSCEECCSEEE--ECSSCEEEECCEEEECGGGCEEEE
T ss_pred             CCccCCcccccCCcCCCCceEEEE---CCCeEEEeCCCcC--cccceeeeEEeeeEEEeecCCCcc
Confidence            10000         0111223332   5799999987542  269999999999999999988653

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}

Probab=99.41  E-value=1.8e-13  Score=127.14  Aligned_cols=78  Identities=37%  Similarity=0.860  Sum_probs=70.5

Q ss_pred             CCCCCCCCCCCCCeec-------ccCCCCCceeeecCCCCCCCCCccCccCCCCCCccCCCceeeecCCCcEEcCCCCCC
Q psy9228         568 SPVCAPKPCQNYGICY-------PTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDSYECLCSLGYA  640 (834)
Q Consensus       568 ~~~C~~~pC~ngg~C~-------~~~~~~~~~~C~C~~G~~G~~Ce~~~~~C~~~~pC~ngg~C~~~~~~~~C~C~~g~~  640 (834)
                      .++|.++||.|+|+|+       +...   +|+|.|++||+|..|+.++++|... ||.++|+|++..++|+|.|++||+
T Consensus        52 ~~~C~~~~C~~~g~C~~~~~~~~~~~~---~~~C~C~~G~~G~~C~~~i~~C~~~-~C~~~~~C~~~~g~~~C~C~~G~~  127 (143)
T 4d90_A           52 AGPCTPNPCHNGGTCEISEAYRGDTFI---GYVCKCPRGFNGIHCQHNINECEVE-PCKNGGICTDLVANYSCECPGEFM  127 (143)
T ss_dssp             CCTTSSCCCCTTCEEEECCCEETTEEC---CEEEECCTTEESTTSCEECCTTTTC-CSCTTCEEEEETTEEEEECCTTCB
T ss_pred             CCcCCCCCCCCCCEecCCCccccCCCC---CeEeECcCCCcCCCcccCCCcCCCC-CCCCCCEeECCCCCeEeECCCCCc
Confidence            3679999999999999       4444   8999999999999999999999988 999999999999999999999999


Q ss_pred             CCCcccccc
Q psy9228         641 PPNCAKRVS  649 (834)
Q Consensus       641 G~~Ce~~~~  649 (834)
                      |.+|+....
T Consensus       128 G~~c~~~~~  136 (143)
T 4d90_A          128 GRNCQYKGG  136 (143)
T ss_dssp             STTSCBC--
T ss_pred             cCCceecCC
Confidence            999997653

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A

Probab=99.37  E-value=3e-13  Score=111.63  Aligned_cols=69  Identities=33%  Similarity=0.886  Sum_probs=61.7

Q ss_pred             CccCCCCCCCCCCCCEeccCCCCCceEeeCCCCCC--CCCCCCCCCCcc-CCCCCCCeeecCCCCeEEeCCCCcccCc
Q psy9228         136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFS--GDRCSVLGEPCY-PGACGDGSCQDVDGAMKCLCPIGTAGKR  210 (834)
Q Consensus       136 ~~C~~~~~~pC~n~g~C~~~~~~~~~~C~C~~g~~--G~~Ce~~~~~C~-~~~C~~g~C~~~~~~~~C~C~~g~~G~~  210 (834)
                      |+|..  .+||.| |+|++..  ++|+|.|++||+  |..| +++|+|. ++||.+|+|++..++|.|.|++||+|..
T Consensus         6 deC~~--~~~C~~-g~C~n~~--g~y~C~C~~Gy~~~g~~C-~dideC~~~~~C~~~~C~n~~g~y~C~C~~G~~g~~   77 (82)
T 1emn_A            6 DECKE--PDVCKH-GQCINTD--GSYRCECPFGYILAGNEC-VDTDECSVGNPCGNGTCKNVIGGFECTCEEGFEPGP   77 (82)
T ss_dssp             CSSSS--TTSCSS-SEECCCS--SCCCEECCTTEEEETTEE-EECCGGGTCCTTSSSCEEECSSSEEECCSSSSCCCS
T ss_pred             ccCCC--CCCcCC-CEEEecC--CCEEEECCCCeECCCCcc-CCcccccCCCCCCCCEeECCCCCEEeECCCCeEeCC
Confidence            67871  389987 8999986  899999999997  9999 6899998 7999999999999999999999999853

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A

Probab=99.37  E-value=2.7e-13  Score=125.73  Aligned_cols=76  Identities=22%  Similarity=0.569  Sum_probs=62.4

Q ss_pred             CccCCCCCCCCCCCCEeccCCCCCceEeeCCCCCCCC------------CCCCCCCCccC--CCCCC-CeeecCCCCeEE
Q psy9228         136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGD------------RCSVLGEPCYP--GACGD-GSCQDVDGAMKC  200 (834)
Q Consensus       136 ~~C~~~~~~pC~n~g~C~~~~~~~~~~C~C~~g~~G~------------~Ce~~~~~C~~--~~C~~-g~C~~~~~~~~C  200 (834)
                      ++|.....+||.++++|++..  ++|+|.|++||+|.            .|+ ++|+|..  +||.+ ++|++..++|+|
T Consensus        45 deC~~~~~~~C~~~~~C~n~~--g~y~C~C~~Gy~g~~~~~~~~~~~~~~C~-dideC~~~~~~C~~~~~C~n~~g~y~C  121 (143)
T 2bou_A           45 NECATLSKVSCGKFSDCWNTE--GSYDCVCSPGYEPVSGAKTFKNESENTCQ-DVDECSSGQHQCDSSTVCFNTVGSYSC  121 (143)
T ss_dssp             CGGGC----CCCTTEEEEECS--SCEEEEECTTEEETTCCSCBSSGGGCCEE-ECCHHHHTCCCCCTTSEEEECSSCEEE
T ss_pred             ccccCCCCCCCCCCCEEEcCC--CCeEeECCCCcccCcCccccccCCCCCcC-CccCccCcCCCCCCCCEEECCCCCEEe
Confidence            577610113999999999987  89999999999987            453 7899985  89985 899999999999


Q ss_pred             eCCCCcccCccccc
Q psy9228         201 LCPIGTAGKRCEQK  214 (834)
Q Consensus       201 ~C~~g~~G~~Ce~~  214 (834)
                      .|++||+|..+...
T Consensus       122 ~C~~Gy~g~~~~~~  135 (143)
T 2bou_A          122 RCRPGWKPRHGIPN  135 (143)
T ss_dssp             ECCSSSCBCTTCCS
T ss_pred             eCCCCcccCCCCcc
Confidence            99999999877543

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A

Probab=99.34  E-value=5.2e-13  Score=112.33  Aligned_cols=69  Identities=25%  Similarity=0.559  Sum_probs=61.8

Q ss_pred             CCCCCCCCCCCCeecccCCCCCceeeecCCCCCCCCCc-cCccCCCCCCccCCCceeeecC--CCcEEcCCCCCCCCCcc
Q psy9228         569 PVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCE-KENNMCMKGDVCKNGGMCKVTP--DSYECLCSLGYAPPNCA  645 (834)
Q Consensus       569 ~~C~~~pC~ngg~C~~~~~~~~~~~C~C~~G~~G~~Ce-~~~~~C~~~~pC~ngg~C~~~~--~~~~C~C~~g~~G~~Ce  645 (834)
                      ++|..+||.|+.         ++|+|.|++||+  .|+ .++++|.++ ||+|+|+|++..  ++|+|.|++||+|.+||
T Consensus        18 ~~c~~~pC~n~~---------~~y~C~C~~G~~--~C~~~~~~~C~~~-pC~ngg~C~~~~~~~~~~C~C~~G~~G~~Ce   85 (91)
T 1tpg_A           18 HQSWLRPVLRSN---------RVEYCWCNSGRA--QCHSVPVKSCSEP-RCFNGGTCQQALYFSDFVCQCPEGFAGKSCE   85 (91)
T ss_dssp             SCEEEEECSSSS---------CEEEEECSSSCC--BCCEECEEECSSC-CSCTTCEEEEESSSSCEEEECCTTCBSSSCC
T ss_pred             CcccCCccccCC---------CCcEeECCCCCc--ccccCcCCcccCC-CCCCCCEeecCCCCCCeEeECCCCCcCCcCC
Confidence            667788888762         389999999998  999 688999998 999999999987  99999999999999999


Q ss_pred             cccc
Q psy9228         646 KRVS  649 (834)
Q Consensus       646 ~~~~  649 (834)
                      .+++
T Consensus        86 ~~id   89 (91)
T 1tpg_A           86 IDTR   89 (91)
T ss_dssp             BCSS
T ss_pred             cCCC
Confidence            8765

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*

Probab=99.32  E-value=2.7e-13  Score=130.10  Aligned_cols=73  Identities=33%  Similarity=0.869  Sum_probs=31.6

Q ss_pred             CccCCCCCCCCCCCCEeccCCCCCceEeeCCCCCCCCCCCCCC-CCccC--CCCCCCeeecCCCCeEEeCCCCcc----c
Q psy9228         136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLG-EPCYP--GACGDGSCQDVDGAMKCLCPIGTA----G  208 (834)
Q Consensus       136 ~~C~~~~~~pC~n~g~C~~~~~~~~~~C~C~~g~~G~~Ce~~~-~~C~~--~~C~~g~C~~~~~~~~C~C~~g~~----G  208 (834)
                      ++|.   ++||+|+|+|++..  ++|+|.|++||+|.+|+.++ ++|..  .+|.+ +|++..++|.|.|++||+    |
T Consensus        43 deC~---~~pC~ngg~C~n~~--g~y~C~C~~Gf~G~~Ce~~i~deC~~~~~~C~~-~C~n~~gsy~C~C~~Gy~l~~dG  116 (195)
T 1nfu_B           43 DQCE---TSPCQNQGKCKDGL--GEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQ-FCHEEQNSVVCSCARGYTLADNG  116 (195)
T ss_dssp             -------------------------------------------CCGGGTGGGGCSS-EEEEETTEEEEECCTTEEECTTS
T ss_pred             cccC---CCCCCCCCEeECCC--CCeeEeCCCCceeccccccccccccCCCCCCCC-EeECCCCCeEEECCCCceeCCCC
Confidence            6899   99999999999976  89999999999999999888 89997  46777 999999999999999999    9


Q ss_pred             Cccccc
Q psy9228         209 KRCEQK  214 (834)
Q Consensus       209 ~~Ce~~  214 (834)
                      ..|+..
T Consensus       117 ~~C~~~  122 (195)
T 1nfu_B          117 KACIPT  122 (195)
T ss_dssp             SCEEES
T ss_pred             CccccC
Confidence            999875

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*

Probab=99.30  E-value=1.6e-12  Score=146.43  Aligned_cols=104  Identities=22%  Similarity=0.480  Sum_probs=86.8

Q ss_pred             CceeEEEcCCcc-eee-eeCCcccCC--CcceeeeeCCCCCCCcCCCCccCCCCccceEEEEEEcCEEEEeecccccccC
Q psy9228          56 VERMMFVDGIGP-FSG-ESQGAFQGL--DLSELVYIGAVPDFGEIHPSAGFSNGFKGCVSRLKYNKTEFELFKMAVERVG  131 (834)
Q Consensus        56 ~~g~~cvd~~~~-~~~-~~~~~~~g~--~~~~~~~~gg~p~~~~~~~~~~~~~gf~gCi~~~~~~~~~~~~~~~~~~~~~  131 (834)
                      .+|++|++..+. |+| .|++||+|.  .|+ .                                               
T Consensus        12 ~~gg~C~n~~~Gsy~C~~C~~GytGdg~~Ce-D-----------------------------------------------   43 (634)
T 1yo8_A           12 FPGAQCSSFPDGSWSCGFCPVGFLGNGTHCE-D-----------------------------------------------   43 (634)
T ss_dssp             CTTCCEEECTTSCEEECCCCTTBCSCSSSCC-B-----------------------------------------------
T ss_pred             CCCCEEecCCCCCeECCcCCCccCCCCCCcc-c-----------------------------------------------
Confidence            577899998854 999 999999872  221 0                                               


Q ss_pred             CCCCCccCCCCCCC--CCCCC---EeccCCCCCceEee-CCCCCCCCCCC--------------CCCCCccC--CCCCC-
Q psy9228         132 VDSCNTCKSSKHNN--CINNG---LCQDAATRIGYTCI-CPPGFSGDRCS--------------VLGEPCYP--GACGD-  188 (834)
Q Consensus       132 ~~~c~~C~~~~~~p--C~n~g---~C~~~~~~~~~~C~-C~~g~~G~~Ce--------------~~~~~C~~--~~C~~-  188 (834)
                         -++|.   .+|  |.+++   +|++..  ++|+|. |++||+|..|+              +++++|..  +||++ 
T Consensus        44 ---iDEC~---~~p~~C~~gg~~~~CvNt~--gsY~C~~C~~Gy~G~~c~g~g~~~~~~dg~~C~dideC~~~~~pC~~~  115 (634)
T 1yo8_A           44 ---LDECA---LVPDICFSTSKVPRCVNTQ--PGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKH  115 (634)
T ss_dssp             ---CCTTT---TSCCCSCCCSSSCCEEECS--SSEEECCCCTTEEECCCEESSSHHHHSCCCCEEECCTTTTTCCCCCTT
T ss_pred             ---ccccc---CCCCcccCCccccceeecc--CceecccCCCCcccCccccccccccccCCCcccccccccCCCcccccC
Confidence               05787   777  99999   999976  899999 99999999876              57899986  59995 


Q ss_pred             CeeecCC----CCeEEeCCCCccc--Ccccccc
Q psy9228         189 GSCQDVD----GAMKCLCPIGTAG--KRCEQKI  215 (834)
Q Consensus       189 g~C~~~~----~~~~C~C~~g~~G--~~Ce~~~  215 (834)
                      ++|++..    ++|+|.|++||+|  ..|+..+
T Consensus       116 ~~Cvnt~~~~~GsY~C~C~~Gy~GdG~~Ce~d~  148 (634)
T 1yo8_A          116 AECIYLGHFSDPMYKCECQTGYAGDGLICGEDS  148 (634)
T ss_dssp             EEEEECCTTCSSSEEEEECTTEEESSSSEEECT
T ss_pred             ccccccccccccceeeeccCCccccCccccccc
Confidence            7999998    9999999999998  8998643

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*

Probab=99.29  E-value=1.5e-12  Score=120.31  Aligned_cols=72  Identities=33%  Similarity=0.863  Sum_probs=64.6

Q ss_pred             CccCCCCCCCCCCCCEeccCCCCCceEeeCCCCCCCCCCCCCCCCccCC--CCCCCee-ecCCCCeEEeCCCCcc----c
Q psy9228         136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPG--ACGDGSC-QDVDGAMKCLCPIGTA----G  208 (834)
Q Consensus       136 ~~C~~~~~~pC~n~g~C~~~~~~~~~~C~C~~g~~G~~Ce~~~~~C~~~--~C~~g~C-~~~~~~~~C~C~~g~~----G  208 (834)
                      |+|.   ++||+|+|+|++..  ++|+|.|++||+|.+|+.. |+|...  +|.+ +| ++..++|+|.|++||+    |
T Consensus        49 deC~---~~pC~n~g~C~~~~--~~y~C~C~~G~~G~~C~~~-deC~~~~~~C~~-~C~~n~~g~y~C~C~~Gy~l~~dG  121 (146)
T 1x7a_L           49 DQCE---PNPCLNGGLCKDDI--NSYECWCQVGFEGKNCELD-ATCNIKNGRCKQ-FCKTGADSKVLCSCTTGYRLAPDQ  121 (146)
T ss_dssp             -CCS---SCSSCTTCEEEECS--SCEEEECCSSEESTTTCEE-CCTTSGGGSCSS-BCCCCSSSCCCCBCCTTEEECTTS
T ss_pred             CcCC---CCCCCCCCEeECCC--CCEEEecCCCCcCCcCCCC-ccccCCCCCCcC-CCCCCCCCCEEeEcCCCcEeCCCC
Confidence            6898   99999999999987  8999999999999999765 999974  6776 99 9999999999999999    9


Q ss_pred             Cccccc
Q psy9228         209 KRCEQK  214 (834)
Q Consensus       209 ~~Ce~~  214 (834)
                      ..|+..
T Consensus       122 ~~C~~~  127 (146)
T 1x7a_L          122 KSCKPA  127 (146)
T ss_dssp             SSEEEC
T ss_pred             CcCCCC
Confidence            999864

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...

Probab=99.28  E-value=1.2e-12  Score=120.55  Aligned_cols=77  Identities=34%  Similarity=0.739  Sum_probs=69.3

Q ss_pred             CCCCCCCCCCCCCeecccCCCCCceeeecCCCCCCCCCccCccCCCCCCccCCCc---eeeecCC-CcEEcCCCCCC---
Q psy9228         568 SPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGG---MCKVTPD-SYECLCSLGYA---  640 (834)
Q Consensus       568 ~~~C~~~pC~ngg~C~~~~~~~~~~~C~C~~G~~G~~Ce~~~~~C~~~~pC~ngg---~C~~~~~-~~~C~C~~g~~---  640 (834)
                      +++|.++||+|+|+|++..+   +|+|.|++||+|+.|+.++++|.+- +|.+++   +|++..+ +|+|.|++||+   
T Consensus        47 id~C~~~pC~n~g~C~~~~g---~y~C~C~~G~~G~~C~~~~~~c~~c-~~~~~~C~~~C~~~~g~~y~C~C~~Gy~l~~  122 (142)
T 2c4f_L           47 GDQCASSPCQNGGSCKDQLQ---SYICFCLPAFEGRNCETHKDDQLIC-VNENGGCEQYCSDHTGTKRSCRCHEGYSLLA  122 (142)
T ss_dssp             CCGGGGCCCCTTCEEEEETT---EEEEECCTTEESTTSCEEGGGCCST-TTGGGGCSSEEECCTTSCCEEECCTTEEECT
T ss_pred             cCcCcCCCcCCCCEEeCCCC---CEEeeCCCCccCCccccCccccccc-cCCCCCccCEeECCCCCCEEEECCCCceECC
Confidence            57899999999999999987   9999999999999999877787655 788888   9999998 99999999999   


Q ss_pred             -CCCccccc
Q psy9228         641 -PPNCAKRV  648 (834)
Q Consensus       641 -G~~Ce~~~  648 (834)
                       |..|+...
T Consensus       123 dG~~C~~~~  131 (142)
T 2c4f_L          123 DGVSCTPTV  131 (142)
T ss_dssp             TSSCEEESS
T ss_pred             CCCCCCCCC
Confidence             99998654

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}

Probab=99.28  E-value=9e-13  Score=110.17  Aligned_cols=71  Identities=24%  Similarity=0.733  Sum_probs=63.9

Q ss_pred             CccCCCCCCC--CCCCCEeccCCCCCceEeeCCCCCC----CCCCCCCCCCccCCCCCCCeeecCCCCeEEeCCCCcccC
Q psy9228         136 NTCKSSKHNN--CINNGLCQDAATRIGYTCICPPGFS----GDRCSVLGEPCYPGACGDGSCQDVDGAMKCLCPIGTAGK  209 (834)
Q Consensus       136 ~~C~~~~~~p--C~n~g~C~~~~~~~~~~C~C~~g~~----G~~Ce~~~~~C~~~~C~~g~C~~~~~~~~C~C~~g~~G~  209 (834)
                      ++|.   .+|  | ++++|++.+  ++|+|.|++||+    |..|+ ++|+|.++||. ++|++..++|+|.|+ |+.|.
T Consensus         4 deC~---~~~~~C-~~~~C~n~~--g~y~C~C~~G~~~~~~g~~C~-dideC~~~~C~-~~C~n~~g~y~C~C~-g~~G~   74 (87)
T 1z6c_A            4 DECS---LKPSIC-GTAVCKNIP--GDFECECPEGYRYNLKSKSCE-DIDECSENMCA-QLCVNYPGGYTCYCD-GKKGF   74 (87)
T ss_dssp             CSSS---SSSSSB-TTSSCCCBT--TBCCCSSSTTCEEETTTTEEE-CCCHHHHSCCS-SEECCCSSSCCEECC-SSSCC
T ss_pred             cccc---CCCCCC-CCCEeECCC--CCEEEECCCCceECCCCCcCC-CcCeeCCCCCC-CEEEccCCCEEEECC-CCcCC
Confidence            6787   777  9 899999987  899999999999    89995 89999999998 899999999999999 89998


Q ss_pred             cccccc
Q psy9228         210 RCEQKI  215 (834)
Q Consensus       210 ~Ce~~~  215 (834)
                      .|+.+.
T Consensus        75 ~~~~~~   80 (87)
T 1z6c_A           75 KLAQDQ   80 (87)
T ss_dssp             BCCTTS
T ss_pred             cccCCC
Confidence            887653

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...

Probab=99.28  E-value=1.4e-12  Score=120.27  Aligned_cols=74  Identities=30%  Similarity=0.734  Sum_probs=66.7

Q ss_pred             CccCCCCCCCCCCCCEeccCCCCCceEeeCCCCCCCCCCCCCCCCccCCCCCC-C---eeecCCC-CeEEeCCCCcc---
Q psy9228         136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGD-G---SCQDVDG-AMKCLCPIGTA---  207 (834)
Q Consensus       136 ~~C~~~~~~pC~n~g~C~~~~~~~~~~C~C~~g~~G~~Ce~~~~~C~~~~C~~-g---~C~~~~~-~~~C~C~~g~~---  207 (834)
                      ++|.   ++||+|+|+|++..  ++|+|.|++||+|.+|+.++++|.+.+|.+ +   +|++..+ +|+|.|++||+   
T Consensus        48 d~C~---~~pC~n~g~C~~~~--g~y~C~C~~G~~G~~C~~~~~~c~~c~~~~~~C~~~C~~~~g~~y~C~C~~Gy~l~~  122 (142)
T 2c4f_L           48 DQCA---SSPCQNGGSCKDQL--QSYICFCLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLA  122 (142)
T ss_dssp             CGGG---GCCCCTTCEEEEET--TEEEEECCTTEESTTSCEEGGGCCSTTTGGGGCSSEEECCTTSCCEEECCTTEEECT
T ss_pred             CcCc---CCCcCCCCEEeCCC--CCEEeeCCCCccCCccccCccccccccCCCCCccCEeECCCCCCEEEECCCCceECC
Confidence            6898   99999999999986  899999999999999998788887777765 4   8999998 99999999999   


Q ss_pred             -cCccccc
Q psy9228         208 -GKRCEQK  214 (834)
Q Consensus       208 -G~~Ce~~  214 (834)
                       |.+|+..
T Consensus       123 dG~~C~~~  130 (142)
T 2c4f_L          123 DGVSCTPT  130 (142)
T ss_dssp             TSSCEEES
T ss_pred             CCCCCCCC
Confidence             9999865

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...

Probab=99.27  E-value=8e-13  Score=120.43  Aligned_cols=73  Identities=33%  Similarity=0.869  Sum_probs=31.1

Q ss_pred             CccCCCCCCCCCCCCEeccCCCCCceEeeCCCCCCCCCCCCCC-CCccC--CCCCCCeeecCCCCeEEeCCCCcc----c
Q psy9228         136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLG-EPCYP--GACGDGSCQDVDGAMKCLCPIGTA----G  208 (834)
Q Consensus       136 ~~C~~~~~~pC~n~g~C~~~~~~~~~~C~C~~g~~G~~Ce~~~-~~C~~--~~C~~g~C~~~~~~~~C~C~~g~~----G  208 (834)
                      ++|.   ++||+|+|+|++..  ++|+|.|++||+|.+|+..+ |+|..  .+|.+ +|++..++|+|.|++||+    |
T Consensus        43 d~C~---~~pC~n~g~C~~~~--~~y~C~C~~G~~G~~C~~~i~d~C~~~~~~C~~-~C~~~~g~y~C~C~~Gy~l~~~g  116 (134)
T 2vh0_B           43 DQCE---TSPCQNQGKCKDGL--GEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQ-FCHEEQNSVVCSCARGYTLADNG  116 (134)
T ss_dssp             -------------------------------------------CCGGGTGGGGCSS-EEEEETTEEEEECCTTEEECTTS
T ss_pred             CcCC---CCCCCCcCCcccCC--CCEEeeCCCCccCCccccCCCCccccCCCCCCC-EeECCCCCEEEECCCCcEECCCC
Confidence            6898   99999999999876  88999999999999999877 89987  45777 999999999999999999    9


Q ss_pred             Cccccc
Q psy9228         209 KRCEQK  214 (834)
Q Consensus       209 ~~Ce~~  214 (834)
                      ..|+..
T Consensus       117 ~~C~~~  122 (134)
T 2vh0_B          117 KACIPT  122 (134)
T ss_dssp             SCEEES
T ss_pred             CccCcC
Confidence            999864

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1

Probab=99.27  E-value=1.2e-12  Score=109.32  Aligned_cols=67  Identities=24%  Similarity=0.731  Sum_probs=59.1

Q ss_pred             CccCCCCCCC--CCCCCEeccCCCCCceEeeCCCCCC-----CCCCCCCCCCccCCC--CCCCeeecCCCCeEEeCCCCc
Q psy9228         136 NTCKSSKHNN--CINNGLCQDAATRIGYTCICPPGFS-----GDRCSVLGEPCYPGA--CGDGSCQDVDGAMKCLCPIGT  206 (834)
Q Consensus       136 ~~C~~~~~~p--C~n~g~C~~~~~~~~~~C~C~~g~~-----G~~Ce~~~~~C~~~~--C~~g~C~~~~~~~~C~C~~g~  206 (834)
                      |+|.   .+|  |.|+ +|++.+  ++|+|.|++||+     |..|+ ++|+|..+|  |.+++|++..++|+|.|++||
T Consensus         4 deC~---~~~~~C~~g-~C~n~~--g~y~C~C~~Gy~~~~~~g~~C~-dideC~~~~~~C~~~~C~n~~g~y~C~C~~G~   76 (86)
T 1lmj_A            4 DECR---ISPDLCGRG-QCVNTP--GDFECKCDEGYESGFMMMKNCM-DIDECQRDPLLCRGGVCHNTEGSYRCECPPGH   76 (86)
T ss_dssp             CTTT---TCSSTTTTS-CEEEET--TEEEECCCSSEEECTTTSSSEE-ECCHHHHCSSTTTTSEEEEETTEEEEESCTTS
T ss_pred             cccc---CCCCCCCCC-EEECCC--CCEEeeCCCCcCccCCCCCccC-CcccccCCCCcCCCCEeEcCCCCEEEECcCCc
Confidence            6787   655  9875 999987  899999999998     88995 899999887  667899999999999999999


Q ss_pred             ccC
Q psy9228         207 AGK  209 (834)
Q Consensus       207 ~G~  209 (834)
                      ++.
T Consensus        77 ~~~   79 (86)
T 1lmj_A           77 QLS   79 (86)
T ss_dssp             CCC
T ss_pred             ccC
Confidence            875

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A

Probab=99.25  E-value=5.5e-12  Score=103.95  Aligned_cols=69  Identities=36%  Similarity=0.935  Sum_probs=60.9

Q ss_pred             CCCCCC-CCCCCCCeecccCCCCCceeeecCCCCC--CCCCccCccCCCCCCccCCCceeeecCCCcEEcCCCCCCCC
Q psy9228         568 SPVCAP-KPCQNYGICYPTDTSERGYNCSCLTGYS--GDHCEKENNMCMKGDVCKNGGMCKVTPDSYECLCSLGYAPP  642 (834)
Q Consensus       568 ~~~C~~-~pC~ngg~C~~~~~~~~~~~C~C~~G~~--G~~Ce~~~~~C~~~~pC~ngg~C~~~~~~~~C~C~~g~~G~  642 (834)
                      +++|.. +||.| |+|++..+   +|+|.|++||+  |..|+ ++++|....||.| |+|++..++|+|.|++||+|.
T Consensus         5 ideC~~~~~C~~-g~C~n~~g---~y~C~C~~Gy~~~g~~C~-dideC~~~~~C~~-~~C~n~~g~y~C~C~~G~~g~   76 (82)
T 1emn_A            5 MDECKEPDVCKH-GQCINTDG---SYRCECPFGYILAGNECV-DTDECSVGNPCGN-GTCKNVIGGFECTCEEGFEPG   76 (82)
T ss_dssp             CCSSSSTTSCSS-SEECCCSS---CCCEECCTTEEEETTEEE-ECCGGGTCCTTSS-SCEEECSSSEEECCSSSSCCC
T ss_pred             cccCCCCCCcCC-CEEEecCC---CEEEECCCCeECCCCccC-CcccccCCCCCCC-CEeECCCCCEEeECCCCeEeC
Confidence            578985 89987 89999887   99999999997  99994 6799984349997 599999999999999999985

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*

Probab=99.24  E-value=1.3e-12  Score=125.48  Aligned_cols=76  Identities=32%  Similarity=0.789  Sum_probs=31.8

Q ss_pred             CCCCCCCCCCCCCeecccCCCCCceeeecCCCCCCCCCccCc-cCCCCC-CccCCCceeeecCCCcEEcCCCCCC----C
Q psy9228         568 SPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKEN-NMCMKG-DVCKNGGMCKVTPDSYECLCSLGYA----P  641 (834)
Q Consensus       568 ~~~C~~~pC~ngg~C~~~~~~~~~~~C~C~~G~~G~~Ce~~~-~~C~~~-~pC~ngg~C~~~~~~~~C~C~~g~~----G  641 (834)
                      +++|.++||+|+|+|++..+   +|+|.|++||+|..|+..+ ++|... .||.+  +|++..++|+|.|++||+    |
T Consensus        42 ideC~~~pC~ngg~C~n~~g---~y~C~C~~Gf~G~~Ce~~i~deC~~~~~~C~~--~C~n~~gsy~C~C~~Gy~l~~dG  116 (195)
T 1nfu_B           42 GDQCETSPCQNQGKCKDGLG---EYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQ--FCHEEQNSVVCSCARGYTLADNG  116 (195)
T ss_dssp             ------------------------------------------CCGGGTGGGGCSS--EEEEETTEEEEECCTTEEECTTS
T ss_pred             CcccCCCCCCCCCEeECCCC---CeeEeCCCCceeccccccccccccCCCCCCCC--EeECCCCCeEEECCCCceeCCCC
Confidence            57899999999999999987   9999999999999999987 889874 26876  999999999999999999    9


Q ss_pred             CCccccc
Q psy9228         642 PNCAKRV  648 (834)
Q Consensus       642 ~~Ce~~~  648 (834)
                      ..|+...
T Consensus       117 ~~C~~~~  123 (195)
T 1nfu_B          117 KACIPTG  123 (195)
T ss_dssp             SCEEESS
T ss_pred             CccccCC
Confidence            9998653

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A

Probab=99.23  E-value=3.2e-12  Score=113.66  Aligned_cols=92  Identities=22%  Similarity=0.517  Sum_probs=76.3

Q ss_pred             EEEcC-CcceeeeeCCcccCCCcceeeeeCCCCCCCcCCCCccCCCCccceEEEEEEcCEEEEeecccccccCCCCCCcc
Q psy9228          60 MFVDG-IGPFSGESQGAFQGLDLSELVYIGAVPDFGEIHPSAGFSNGFKGCVSRLKYNKTEFELFKMAVERVGVDSCNTC  138 (834)
Q Consensus        60 ~cvd~-~~~~~~~~~~~~~g~~~~~~~~~gg~p~~~~~~~~~~~~~gf~gCi~~~~~~~~~~~~~~~~~~~~~~~~c~~C  138 (834)
                      +|+|. .+.|+|.|++||+|...+..                       -|.                         ++|
T Consensus        15 ~C~~~~~g~y~C~C~~Gy~g~~~~~~-----------------------~C~-------------------------~~C   46 (118)
T 1dx5_I           15 QCQPLDQTSYLCVCAEGFAPIPHEPH-----------------------RCQ-------------------------MFC   46 (118)
T ss_dssp             EEEECSSSCEEEECCTTEEEETTEEE-----------------------EEE-------------------------ECC
T ss_pred             CCCCCCCCCEEeECCCCccccCCCCC-----------------------ccc-------------------------ccc
Confidence            89999 89999999999988632110                       021                         135


Q ss_pred             CCCCCCCCCCCCEeccCCCCCceEeeCCCCCC---CCCCCCCCCCccC-CCCCCCeeecCCCCeEEeCCCCcccC
Q psy9228         139 KSSKHNNCINNGLCQDAATRIGYTCICPPGFS---GDRCSVLGEPCYP-GACGDGSCQDVDGAMKCLCPIGTAGK  209 (834)
Q Consensus       139 ~~~~~~pC~n~g~C~~~~~~~~~~C~C~~g~~---G~~Ce~~~~~C~~-~~C~~g~C~~~~~~~~C~C~~g~~G~  209 (834)
                      .   .+||.  ++|++ .  ++|+|.|++||+   |..| +++|+|.. +|| +++|++..++|+|.|++||+|.
T Consensus        47 ~---~~~C~--~~C~~-~--~~y~C~C~~Gy~~~~g~~C-~dideC~~~~~C-~~~C~n~~g~y~C~C~~G~~g~  111 (118)
T 1dx5_I           47 N---QTACP--ADCDP-N--TQASCECPEGYILDDGFIC-TDIDECENGGFC-SGVCHNLPGTFECICGPDSALA  111 (118)
T ss_dssp             C---SSEEE--CEECT-T--STTCEECCTTEEEETTTEE-EECCHHHHCSSC-SSEEEECSSSEEEEECSSSSCE
T ss_pred             C---CCCCC--CcccC-C--CCeEeECCCCccCCCCCcc-ccccccCCCCCC-cCeEEeCCCCEEEECCCCCccC
Confidence            5   77887  79987 3  789999999999   9999 68999998 999 8899999999999999999875

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*

Probab=99.20  E-value=8.7e-12  Score=110.19  Aligned_cols=73  Identities=25%  Similarity=0.591  Sum_probs=61.8

Q ss_pred             CccCCCCCCC--------CCCCCEeccCCCCCceEeeCCCCCCCCCCCCCC--CCccCC--CCCCCeeecCCCCeEEeCC
Q psy9228         136 NTCKSSKHNN--------CINNGLCQDAATRIGYTCICPPGFSGDRCSVLG--EPCYPG--ACGDGSCQDVDGAMKCLCP  203 (834)
Q Consensus       136 ~~C~~~~~~p--------C~n~g~C~~~~~~~~~~C~C~~g~~G~~Ce~~~--~~C~~~--~C~~g~C~~~~~~~~C~C~  203 (834)
                      |+|.   ++|        |.|+|+|++..  ++|+|.|++||+|.+|+..+  ++|..+  +|.+ +|++..++|+|.|+
T Consensus         7 d~C~---~~p~~~~C~~~C~~~g~C~~~~--~~y~C~C~~G~~G~~C~~~~~~~~C~~~~~~C~~-~C~n~~g~y~C~C~   80 (114)
T 1aut_L            7 DQCL---VLPLEHPCASLCCGHGTCIDGI--GSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTH-YCLEEVGWRRCSCA   80 (114)
T ss_dssp             -CCC---CCSSCCSSSSTTTTSEEECCCS--SCCCEEECTTEESTTSCEECCSSSSSSGGGGCSS-EEEECSSSEEEECC
T ss_pred             cccc---CCCccccccccCCCcCCCCCCC--CCcEeeCCCCCcCCCcCcCCcCCcCcCCCCCCCC-EeECCCCCEEeECC
Confidence            5788   888        99999999876  89999999999999998754  489854  4555 99999999999999


Q ss_pred             CCcc----cCccccc
Q psy9228         204 IGTA----GKRCEQK  214 (834)
Q Consensus       204 ~g~~----G~~Ce~~  214 (834)
                      +||+    |..|+..
T Consensus        81 ~G~~~~~~g~~C~~~   95 (114)
T 1aut_L           81 PGYKLGDDLLQCHPA   95 (114)
T ss_dssp             TTEEECTTSSCEEEC
T ss_pred             CCeeECCCCCccCcC
Confidence            9999    5677654

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...

Probab=99.19  E-value=3.1e-12  Score=116.53  Aligned_cols=75  Identities=32%  Similarity=0.814  Sum_probs=30.9

Q ss_pred             CCCCCCCCCCCCCeecccCCCCCceeeecCCCCCCCCCccCc-cCCCCC-CccCCCceeeecCCCcEEcCCCCCC----C
Q psy9228         568 SPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKEN-NMCMKG-DVCKNGGMCKVTPDSYECLCSLGYA----P  641 (834)
Q Consensus       568 ~~~C~~~pC~ngg~C~~~~~~~~~~~C~C~~G~~G~~Ce~~~-~~C~~~-~pC~ngg~C~~~~~~~~C~C~~g~~----G  641 (834)
                      +++|.++||+|+|+|++..+   +|+|.|++||+|..|+..+ ++|... .+|.+  +|++..++|+|.|++||+    |
T Consensus        42 ~d~C~~~pC~n~g~C~~~~~---~y~C~C~~G~~G~~C~~~i~d~C~~~~~~C~~--~C~~~~g~y~C~C~~Gy~l~~~g  116 (134)
T 2vh0_B           42 GDQCETSPCQNQGKCKDGLG---EYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQ--FCHEEQNSVVCSCARGYTLADNG  116 (134)
T ss_dssp             ------------------------------------------CCGGGTGGGGCSS--EEEEETTEEEEECCTTEEECTTS
T ss_pred             cCcCCCCCCCCcCCcccCCC---CEEeeCCCCccCCccccCCCCccccCCCCCCC--EeECCCCCEEEECCCCcEECCCC
Confidence            57899999999999999887   9999999999999999987 889864 26776  999999999999999999    9


Q ss_pred             CCcccc
Q psy9228         642 PNCAKR  647 (834)
Q Consensus       642 ~~Ce~~  647 (834)
                      ..|+..
T Consensus       117 ~~C~~~  122 (134)
T 2vh0_B          117 KACIPT  122 (134)
T ss_dssp             SCEEES
T ss_pred             CccCcC
Confidence            999754

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*

Probab=99.19  E-value=8.2e-12  Score=115.25  Aligned_cols=75  Identities=32%  Similarity=0.830  Sum_probs=65.7

Q ss_pred             CCCCCCCCCCCCCeecccCCCCCceeeecCCCCCCCCCccCccCCCCC-CccCCCcee-eecCCCcEEcCCCCCC----C
Q psy9228         568 SPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKG-DVCKNGGMC-KVTPDSYECLCSLGYA----P  641 (834)
Q Consensus       568 ~~~C~~~pC~ngg~C~~~~~~~~~~~C~C~~G~~G~~Ce~~~~~C~~~-~pC~ngg~C-~~~~~~~~C~C~~g~~----G  641 (834)
                      +++|.++||+|+|+|++..+   +|+|.|++||+|..|+.. ++|... .+|.+  +| ++..++|+|.|++||+    |
T Consensus        48 ideC~~~pC~n~g~C~~~~~---~y~C~C~~G~~G~~C~~~-deC~~~~~~C~~--~C~~n~~g~y~C~C~~Gy~l~~dG  121 (146)
T 1x7a_L           48 GDQCEPNPCLNGGLCKDDIN---SYECWCQVGFEGKNCELD-ATCNIKNGRCKQ--FCKTGADSKVLCSCTTGYRLAPDQ  121 (146)
T ss_dssp             --CCSSCSSCTTCEEEECSS---CEEEECCSSEESTTTCEE-CCTTSGGGSCSS--BCCCCSSSCCCCBCCTTEEECTTS
T ss_pred             cCcCCCCCCCCCCEeECCCC---CEEEecCCCCcCCcCCCC-ccccCCCCCCcC--CCCCCCCCCEEeEcCCCcEeCCCC
Confidence            57899999999999999987   999999999999999976 899874 26766  99 9999999999999999    9


Q ss_pred             CCccccc
Q psy9228         642 PNCAKRV  648 (834)
Q Consensus       642 ~~Ce~~~  648 (834)
                      ..|+...
T Consensus       122 ~~C~~~~  128 (146)
T 1x7a_L          122 KSCKPAV  128 (146)
T ss_dssp             SSEEECS
T ss_pred             CcCCCCC
Confidence            9998643

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}

Probab=99.19  E-value=4.5e-12  Score=133.51  Aligned_cols=26  Identities=12%  Similarity=0.047  Sum_probs=17.1

Q ss_pred             CceeEEEcCCcceeeeeCCcccCCCccee
Q psy9228          56 VERMMFVDGIGPFSGESQGAFQGLDLSEL   84 (834)
Q Consensus        56 ~~g~~cvd~~~~~~~~~~~~~~g~~~~~~   84 (834)
                      .+++.|++   .+.|.|++||+|.+|+..
T Consensus       156 ~~~G~C~~---~~~C~C~~G~~G~~C~~~  181 (324)
T 2ygq_A          156 RNGGFCNE---RRICECPDGFHGPHCEKA  181 (324)
T ss_dssp             CSSCEECT---TSCEECCTTEESSSSCEE
T ss_pred             CCCCEECC---CCeEECCCCCcCCCCCCC
Confidence            45666664   366777777777777654

>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}

Probab=99.19  E-value=6e-12  Score=92.99  Aligned_cols=47  Identities=28%  Similarity=0.534  Sum_probs=40.2

Q ss_pred             CCCCccCccCCCCCCccCCCcee-----eecCCCcEEcCCCCCCCCCcccccc
Q psy9228         602 GDHCEKENNMCMKGDVCKNGGMC-----KVTPDSYECLCSLGYAPPNCAKRVS  649 (834)
Q Consensus       602 G~~Ce~~~~~C~~~~pC~ngg~C-----~~~~~~~~C~C~~g~~G~~Ce~~~~  649 (834)
                      |.+|+.++++|.++ ||+|||+|     ++..++|+|.|++||+|++||..+.
T Consensus         1 G~~c~~~~~eC~s~-pC~NgGtC~~~~~~d~~~~y~C~C~~g~~G~~CE~~v~   52 (55)
T 3u7u_G            1 GTSHLVKCAEKEKT-FCVNGGECFMVKDLSNPSRYLCKCPNEFTGDRCQNYVM   52 (55)
T ss_dssp             --CCEEECCSTTTT-TSCTTCEEEEECCC--CCCEEEEECTTEESTTSCEECC
T ss_pred             CCCCcccCCCCcCC-CCCCCCCcCCCCccCCCCCEeEeCCCCCcCCCcCccCc
Confidence            67899999999999 99999999     4667899999999999999998764

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}

Probab=99.17  E-value=6.2e-12  Score=105.06  Aligned_cols=74  Identities=27%  Similarity=0.738  Sum_probs=65.5

Q ss_pred             CCCCCCCC--CCCCCeecccCCCCCceeeecCCCCC----CCCCccCccCCCCCCccCCCceeeecCCCcEEcCCCCCCC
Q psy9228         568 SPVCAPKP--CQNYGICYPTDTSERGYNCSCLTGYS----GDHCEKENNMCMKGDVCKNGGMCKVTPDSYECLCSLGYAP  641 (834)
Q Consensus       568 ~~~C~~~p--C~ngg~C~~~~~~~~~~~C~C~~G~~----G~~Ce~~~~~C~~~~pC~ngg~C~~~~~~~~C~C~~g~~G  641 (834)
                      +++|.++|  | ++++|++..+   +|+|.|++||+    |+.|+ ++++|.+. ||.  ++|++.+++|+|.|+ ||.|
T Consensus         3 ideC~~~~~~C-~~~~C~n~~g---~y~C~C~~G~~~~~~g~~C~-dideC~~~-~C~--~~C~n~~g~y~C~C~-g~~G   73 (87)
T 1z6c_A            3 VDECSLKPSIC-GTAVCKNIPG---DFECECPEGYRYNLKSKSCE-DIDECSEN-MCA--QLCVNYPGGYTCYCD-GKKG   73 (87)
T ss_dssp             SCSSSSSSSSB-TTSSCCCBTT---BCCCSSSTTCEEETTTTEEE-CCCHHHHS-CCS--SEECCCSSSCCEECC-SSSC
T ss_pred             cccccCCCCCC-CCCEeECCCC---CEEEECCCCceECCCCCcCC-CcCeeCCC-CCC--CEEEccCCCEEEECC-CCcC
Confidence            47899888  9 8999999987   99999999999    89996 78999887 997  799999999999999 8999


Q ss_pred             CCccccccc
Q psy9228         642 PNCAKRVSI  650 (834)
Q Consensus       642 ~~Ce~~~~~  650 (834)
                      ..|+.+...
T Consensus        74 ~~~~~~~~~   82 (87)
T 1z6c_A           74 FKLAQDQKS   82 (87)
T ss_dssp             CBCCTTSSS
T ss_pred             CcccCCCCc
Confidence            888766543

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=99.16  E-value=2e-11  Score=129.90  Aligned_cols=68  Identities=34%  Similarity=0.881  Sum_probs=63.9

Q ss_pred             CccCCCCCCCCCCCCEeccCCCCCceEeeCCCCCCCCCCCCCCCCccC---CCCCCCeeecCCCCeEEeCCCCcccC
Q psy9228         136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYP---GACGDGSCQDVDGAMKCLCPIGTAGK  209 (834)
Q Consensus       136 ~~C~~~~~~pC~n~g~C~~~~~~~~~~C~C~~g~~G~~Ce~~~~~C~~---~~C~~g~C~~~~~~~~C~C~~g~~G~  209 (834)
                      ++|.   ++||+|+|+|.+..  ++|+|.|++||+|.+||.++|+|..   +||.+ +|++..++|.|.|++||+|.
T Consensus         6 ~~C~---~~pC~~~g~C~~~~--~~~~C~C~~g~~g~~C~~~~~eC~~~~~~~C~~-~C~~~~g~~~C~C~~g~~~~   76 (317)
T 3h5c_B            6 SPCI---SQPCLHNGSCQDSI--WGYTCTCSPGYEGSNCELAKNECHPERTDGCQH-FCLPGQESYTCSCAQGYRLG   76 (317)
T ss_dssp             CCTT---SCCCTTTCCCCCCS--SSCCCCCSSSCCSSSSCCCSSSCCTTCTTSCSS-EEECCSSSCEEECCTTEECC
T ss_pred             CcCC---CCCCCCCCEeECCC--CCeEEECCCCCcCCccccCcccCCCCCCCCCcC-ccccCCCeeEEecccccccc
Confidence            6898   99999999999876  8899999999999999999999997   89998 99999999999999999873

>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}

Probab=99.15  E-value=1.5e-11  Score=90.82  Aligned_cols=45  Identities=24%  Similarity=0.479  Sum_probs=38.1

Q ss_pred             CCCCCCCCCCccCCCCCC-Cee-----ecCCCCeEEeCCCCcccCcccccc
Q psy9228         171 GDRCSVLGEPCYPGACGD-GSC-----QDVDGAMKCLCPIGTAGKRCEQKI  215 (834)
Q Consensus       171 G~~Ce~~~~~C~~~~C~~-g~C-----~~~~~~~~C~C~~g~~G~~Ce~~~  215 (834)
                      |.+|+.++|+|+++||+| |+|     ++..++|+|.|++||+|++||..+
T Consensus         1 G~~c~~~~~eC~s~pC~NgGtC~~~~~~d~~~~y~C~C~~g~~G~~CE~~v   51 (55)
T 3u7u_G            1 GTSHLVKCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCPNEFTGDRCQNYV   51 (55)
T ss_dssp             --CCEEECCSTTTTTSCTTCEEEEECCC--CCCEEEEECTTEESTTSCEEC
T ss_pred             CCCCcccCCCCcCCCCCCCCCcCCCCccCCCCCEeEeCCCCCcCCCcCccC
Confidence            678999999999999997 799     466789999999999999999874

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*

Probab=99.12  E-value=4.3e-11  Score=105.70  Aligned_cols=75  Identities=25%  Similarity=0.666  Sum_probs=61.6

Q ss_pred             CCCCCCCC--------CCCCCeecccCCCCCceeeecCCCCCCCCCccCcc--CCCCC-CccCCCceeeecCCCcEEcCC
Q psy9228         568 SPVCAPKP--------CQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENN--MCMKG-DVCKNGGMCKVTPDSYECLCS  636 (834)
Q Consensus       568 ~~~C~~~p--------C~ngg~C~~~~~~~~~~~C~C~~G~~G~~Ce~~~~--~C~~~-~pC~ngg~C~~~~~~~~C~C~  636 (834)
                      .++|.++|        |.|+|+|++..+   +|+|.|++||+|..|+..++  +|... .+|.+  +|++..++|+|.|+
T Consensus         6 ~d~C~~~p~~~~C~~~C~~~g~C~~~~~---~y~C~C~~G~~G~~C~~~~~~~~C~~~~~~C~~--~C~n~~g~y~C~C~   80 (114)
T 1aut_L            6 GDQCLVLPLEHPCASLCCGHGTCIDGIG---SFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTH--YCLEEVGWRRCSCA   80 (114)
T ss_dssp             --CCCCCSSCCSSSSTTTTSEEECCCSS---CCCEEECTTEESTTSCEECCSSSSSSGGGGCSS--EEEECSSSEEEECC
T ss_pred             cccccCCCccccccccCCCcCCCCCCCC---CcEeeCCCCCcCCCcCcCCcCCcCcCCCCCCCC--EeECCCCCEEeECC
Confidence            46788888        999999999887   99999999999999998644  78653 24543  99999999999999


Q ss_pred             CCCC----CCCcccc
Q psy9228         637 LGYA----PPNCAKR  647 (834)
Q Consensus       637 ~g~~----G~~Ce~~  647 (834)
                      +||+    |..|+..
T Consensus        81 ~G~~~~~~g~~C~~~   95 (114)
T 1aut_L           81 PGYKLGDDLLQCHPA   95 (114)
T ss_dssp             TTEEECTTSSCEEEC
T ss_pred             CCeeECCCCCccCcC
Confidence            9999    5667643

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1

Probab=99.11  E-value=2.2e-11  Score=101.55  Aligned_cols=68  Identities=31%  Similarity=0.773  Sum_probs=59.9

Q ss_pred             CCCCCCCC--CCCCCeecccCCCCCceeeecCCCCC-----CCCCccCccCCCCCCc--cCCCceeeecCCCcEEcCCCC
Q psy9228         568 SPVCAPKP--CQNYGICYPTDTSERGYNCSCLTGYS-----GDHCEKENNMCMKGDV--CKNGGMCKVTPDSYECLCSLG  638 (834)
Q Consensus       568 ~~~C~~~p--C~ngg~C~~~~~~~~~~~C~C~~G~~-----G~~Ce~~~~~C~~~~p--C~ngg~C~~~~~~~~C~C~~g  638 (834)
                      +++|.++|  |.|+ +|++..+   +|+|.|++||+     |..|+ ++++|... |  |. +++|++..++|+|.|++|
T Consensus         3 ideC~~~~~~C~~g-~C~n~~g---~y~C~C~~Gy~~~~~~g~~C~-dideC~~~-~~~C~-~~~C~n~~g~y~C~C~~G   75 (86)
T 1lmj_A            3 IDECRISPDLCGRG-QCVNTPG---DFECKCDEGYESGFMMMKNCM-DIDECQRD-PLLCR-GGVCHNTEGSYRCECPPG   75 (86)
T ss_dssp             CCTTTTCSSTTTTS-CEEEETT---EEEECCCSSEEECTTTSSSEE-ECCHHHHC-SSTTT-TSEEEEETTEEEEESCTT
T ss_pred             cccccCCCCCCCCC-EEECCCC---CEEeeCCCCcCccCCCCCccC-CcccccCC-CCcCC-CCEeEcCCCCEEEECcCC
Confidence            57898776  9875 9999987   99999999998     88997 78999877 6  75 589999999999999999


Q ss_pred             CCCC
Q psy9228         639 YAPP  642 (834)
Q Consensus       639 ~~G~  642 (834)
                      |++.
T Consensus        76 ~~~~   79 (86)
T 1lmj_A           76 HQLS   79 (86)
T ss_dssp             SCCC
T ss_pred             cccC
Confidence            9875

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*

Probab=99.11  E-value=4.8e-11  Score=136.29  Aligned_cols=62  Identities=27%  Similarity=0.683  Sum_probs=51.4

Q ss_pred             CCCCCCCCEeccCCCCCceEeeCCCCCCCCCCCCCCC---------CccCC----CCCC-CeeecCCCCeEEeCC-----
Q psy9228         143 HNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGE---------PCYPG----ACGD-GSCQDVDGAMKCLCP-----  203 (834)
Q Consensus       143 ~~pC~n~g~C~~~~~~~~~~C~C~~g~~G~~Ce~~~~---------~C~~~----~C~~-g~C~~~~~~~~C~C~-----  203 (834)
                      +++|.++|+|..      ..|.|++||+|.+||...+         .|...    +|.+ |+|++.    .|.|+     
T Consensus       434 s~~Cs~~G~C~~------g~C~C~~Gy~G~~Cec~~~~~~~~~~~~~C~~~~~~~~Cs~~G~C~~G----~C~C~~~~~~  503 (687)
T 3k6s_B          434 RSLCHGKGFLEC------GICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCG----QCLCHTSDVP  503 (687)
T ss_dssp             SSTGGGSEEESS------SSEEECSSEESTTSCEESSSCCCSGGGSTTSSSTTSCGGGSSEEEETT----EEEECCCCST
T ss_pred             CCCCCCCCEEeC------CEeEcCCCCcCCcccccCCcCCccccCCCCCCCCCCCcCCCCCEEeCC----EEEcCCCCCC
Confidence            678999999984      3699999999999996554         68764    4984 899952    99999     


Q ss_pred             -CCcccCccccc
Q psy9228         204 -IGTAGKRCEQK  214 (834)
Q Consensus       204 -~g~~G~~Ce~~  214 (834)
                       +||+|..||.+
T Consensus       504 ~~G~~G~~Ce~~  515 (687)
T 3k6s_B          504 GKLIYGQYCECD  515 (687)
T ss_dssp             TCCEESTTSCEE
T ss_pred             CCCccccccccc
Confidence             99999999854

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=99.08  E-value=6.9e-11  Score=125.68  Aligned_cols=70  Identities=36%  Similarity=0.894  Sum_probs=64.0

Q ss_pred             CCCCCCCCCCCCCeecccCCCCCceeeecCCCCCCCCCccCccCCCC--CCccCCCceeeecCCCcEEcCCCCCCCC
Q psy9228         568 SPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMK--GDVCKNGGMCKVTPDSYECLCSLGYAPP  642 (834)
Q Consensus       568 ~~~C~~~pC~ngg~C~~~~~~~~~~~C~C~~G~~G~~Ce~~~~~C~~--~~pC~ngg~C~~~~~~~~C~C~~g~~G~  642 (834)
                      .++|.++||+|+|+|.+...   +|+|.|++||+|+.|+.++++|..  ..||.+  +|++..++|+|.|++||.|.
T Consensus         5 ~~~C~~~pC~~~g~C~~~~~---~~~C~C~~g~~g~~C~~~~~eC~~~~~~~C~~--~C~~~~g~~~C~C~~g~~~~   76 (317)
T 3h5c_B            5 GSPCISQPCLHNGSCQDSIW---GYTCTCSPGYEGSNCELAKNECHPERTDGCQH--FCLPGQESYTCSCAQGYRLG   76 (317)
T ss_dssp             -CCTTSCCCTTTCCCCCCSS---SCCCCCSSSCCSSSSCCCSSSCCTTCTTSCSS--EEECCSSSCEEECCTTEECC
T ss_pred             CCcCCCCCCCCCCEeECCCC---CeEEECCCCCcCCccccCcccCCCCCCCCCcC--ccccCCCeeEEecccccccc
Confidence            47899999999999999887   999999999999999999999987  249998  99999999999999999873

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.06  E-value=7.1e-09  Score=113.37  Aligned_cols=72  Identities=29%  Similarity=0.704  Sum_probs=21.2

Q ss_pred             CccCCCCCCCCCCCCEeccCCCCCceEeeCCCCCC----CCCCCCCCCCcc-CCCCCCCeeecCCCCeEEeCCCCcc---
Q psy9228         136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFS----GDRCSVLGEPCY-PGACGDGSCQDVDGAMKCLCPIGTA---  207 (834)
Q Consensus       136 ~~C~~~~~~pC~n~g~C~~~~~~~~~~C~C~~g~~----G~~Ce~~~~~C~-~~~C~~g~C~~~~~~~~C~C~~g~~---  207 (834)
                      |+|.   ++||....+|.+..  ++|+|.|++||.    |..| +++|||. +.||.++ |++..++|.|.|++||+   
T Consensus         4 ~~C~---~~~~~c~~~C~~~~--g~~~C~C~~G~~l~~~~~~C-~d~~eC~~~~~C~~~-C~~~~g~~~C~C~~g~~l~~   76 (386)
T 3v65_B            4 ENCN---VNNGGCAQKCQMIR--GAVQCTCHTGYRLTEDGRTC-QDVNECAEEGYCSQG-CTNSEGAFQCWCEAGYELRP   76 (386)
T ss_dssp             ------------------------------------------------------CCTTE-EC-----CCEECCTTEEECT
T ss_pred             Cccc---CCCCCCCCCCcCCC--CCcEeECCCCceECCCCCcc-CccceeCCcCcccCc-CCCCCCCCeEEECCCceEcC
Confidence            5787   78866666998765  789999999998    9999 7899997 6899876 99999999999999998   


Q ss_pred             -cCccccc
Q psy9228         208 -GKRCEQK  214 (834)
Q Consensus       208 -G~~Ce~~  214 (834)
                       |..|+..
T Consensus        77 d~~~C~~~   84 (386)
T 3v65_B           77 DRRSCKAL   84 (386)
T ss_dssp             TSSCEEEC
T ss_pred             CCCeECCc
Confidence             8899753

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A

Probab=99.01  E-value=3.1e-11  Score=114.32  Aligned_cols=64  Identities=27%  Similarity=0.644  Sum_probs=51.8

Q ss_pred             CCCCCCCCEeccCCCCCceEeeCCC--CCCCC---CCCCCCCCccC--CCCCCCeeecCCCCeEEeCCCCcccCc
Q psy9228         143 HNNCINNGLCQDAATRIGYTCICPP--GFSGD---RCSVLGEPCYP--GACGDGSCQDVDGAMKCLCPIGTAGKR  210 (834)
Q Consensus       143 ~~pC~n~g~C~~~~~~~~~~C~C~~--g~~G~---~Ce~~~~~C~~--~~C~~g~C~~~~~~~~C~C~~g~~G~~  210 (834)
                      .+||.   +|... ..++|+|.|++  ||+|.   .+.+++|||..  +||.+|+|++..++|+|.|++||+|..
T Consensus        86 ~~~C~---~C~~~-~~~~y~C~C~~g~G~~~~~~~~~c~dideC~~~~~~C~~g~C~n~~gsy~C~C~~Gy~g~~  156 (162)
T 1uzk_A           86 GTPCE---MCPAV-NTSEYKILCPGGEGFRPNPITVILEDIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNE  156 (162)
T ss_dssp             TTTTE---ECCCT-TSHHHHHHCTTCTTEEECTTTCCEEECCHHHHCGGGGBTSEEEECSSCEEEECCTTCCBCT
T ss_pred             CCCcc---cCCCC-CCCCceeECCCCCCcccCCCCCccCccccccCCCCCcCCCEeEcCCCCEEeeCCCCccCCC
Confidence            46675   46543 23789999998  99886   45579999986  569989999999999999999999864

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}

Probab=99.00  E-value=9.1e-11  Score=109.15  Aligned_cols=30  Identities=27%  Similarity=0.821  Sum_probs=25.0

Q ss_pred             CccCCCCCCCCCCCCEeccCCCCCceEeeCCCCCCC
Q psy9228         136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSG  171 (834)
Q Consensus       136 ~~C~~~~~~pC~n~g~C~~~~~~~~~~C~C~~g~~G  171 (834)
                      |+|.   ++||.| |+|++.+  ++|+|.|++||+|
T Consensus         5 deC~---~~pC~n-g~C~n~~--g~y~C~C~~G~~g   34 (147)
T 2w86_A            5 DECE---SSPCIN-GVCKNSP--GSFICECSSESTL   34 (147)
T ss_dssp             CGGG---GCCSBT-SEEEEET--TEEEEECCTTEEE
T ss_pred             ccCc---CCCCCC-CEeECCC--CCEEeECCCCccc
Confidence            6888   899987 6999876  7899988888864

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A

Probab=98.97  E-value=1.5e-10  Score=107.10  Aligned_cols=75  Identities=28%  Similarity=0.736  Sum_probs=64.5

Q ss_pred             CCCCCCC---CCCCCCeecccCCCCCceeeecCCCCCCC------------CCccCccCCCC-CCccCCCceeeecCCCc
Q psy9228         568 SPVCAPK---PCQNYGICYPTDTSERGYNCSCLTGYSGD------------HCEKENNMCMK-GDVCKNGGMCKVTPDSY  631 (834)
Q Consensus       568 ~~~C~~~---pC~ngg~C~~~~~~~~~~~C~C~~G~~G~------------~Ce~~~~~C~~-~~pC~ngg~C~~~~~~~  631 (834)
                      +++|...   ||.++++|++...   +|+|.|++||+|.            .|+ ++++|.. ..||.++++|++..++|
T Consensus        44 ideC~~~~~~~C~~~~~C~n~~g---~y~C~C~~Gy~g~~~~~~~~~~~~~~C~-dideC~~~~~~C~~~~~C~n~~g~y  119 (143)
T 2bou_A           44 INECATLSKVSCGKFSDCWNTEG---SYDCVCSPGYEPVSGAKTFKNESENTCQ-DVDECSSGQHQCDSSTVCFNTVGSY  119 (143)
T ss_dssp             CCGGGC----CCCTTEEEEECSS---CEEEEECTTEEETTCCSCBSSGGGCCEE-ECCHHHHTCCCCCTTSEEEECSSCE
T ss_pred             cccccCCCCCCCCCCCEEEcCCC---CeEeECCCCcccCcCccccccCCCCCcC-CccCccCcCCCCCCCCEEECCCCCE
Confidence            4778875   9999999999887   9999999999987            554 6789974 23999999999999999


Q ss_pred             EEcCCCCCCCCCccc
Q psy9228         632 ECLCSLGYAPPNCAK  646 (834)
Q Consensus       632 ~C~C~~g~~G~~Ce~  646 (834)
                      +|.|++||+|..+..
T Consensus       120 ~C~C~~Gy~g~~~~~  134 (143)
T 2bou_A          120 SCRCRPGWKPRHGIP  134 (143)
T ss_dssp             EEECCSSSCBCTTCC
T ss_pred             EeeCCCCcccCCCCc
Confidence            999999999987654

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A

Probab=98.96  E-value=1.2e-10  Score=101.05  Aligned_cols=56  Identities=36%  Similarity=0.876  Sum_probs=22.4

Q ss_pred             CEeccCCCCCceEeeCCCCCCC---CCCCCCCCCccC-CCCCCCeeecCCCCeEEeCCCCcccC
Q psy9228         150 GLCQDAATRIGYTCICPPGFSG---DRCSVLGEPCYP-GACGDGSCQDVDGAMKCLCPIGTAGK  209 (834)
Q Consensus       150 g~C~~~~~~~~~~C~C~~g~~G---~~Ce~~~~~C~~-~~C~~g~C~~~~~~~~C~C~~g~~G~  209 (834)
                      .+|++.+  ++|+|.|++||+|   ..|+ ++|+|.. +||. ++|++..++|.|.|++||+|.
T Consensus        41 ~~C~n~~--g~y~C~C~~Gy~g~~g~~C~-dideC~~~~~C~-~~C~n~~gsy~C~C~~Gy~~~  100 (107)
T 2w2n_E           41 YVCNDLK--IGYECLCPDGFQLVAQRRCE-DIDECQDPDTCS-QLCVNLEGGYKCQCEEGFQLD  100 (107)
T ss_dssp             SEEECCS--BSCEEECCTTCEEETTTEEE-C---------------------------------
T ss_pred             CEeEeCC--CCeEEECCCCccccCCCccc-cccccCCCCCcC-CeeecCCCCEEEECCCCceEC
Confidence            3899876  8999999999998   8997 8999984 8997 899999999999999999864

>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A

Probab=98.88  E-value=5.3e-10  Score=86.52  Aligned_cols=48  Identities=29%  Similarity=0.648  Sum_probs=40.9

Q ss_pred             CCCccCCCCCCCCCCCCEeccC---CCCCceEeeCCCCCCCCCCCCCCCCccCC
Q psy9228         134 SCNTCKSSKHNNCINNGLCQDA---ATRIGYTCICPPGFSGDRCSVLGEPCYPG  184 (834)
Q Consensus       134 ~c~~C~~~~~~pC~n~g~C~~~---~~~~~~~C~C~~g~~G~~Ce~~~~~C~~~  184 (834)
                      .|++|.   ++||+|||+|++.   ...++|+|.|++||+|.+||.++++|...
T Consensus         5 ~c~~C~---~~pC~ngG~C~~~~~~~~~~~y~C~C~~Gf~G~~Ce~~i~~~~~~   55 (63)
T 1hae_A            5 KCAEKE---KTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPMKVQN   55 (63)
T ss_dssp             ECCHHH---HTTSCTTCEEEEEESSSSSCCEEEECCTTEESTTSCEECCSSCTT
T ss_pred             ccCCCC---CCcCCCCcEEecCCccCCCCCEEEECCCCCcCCccCcCcCccccc
Confidence            478898   9999999999962   12378999999999999999999888764

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A

Probab=98.82  E-value=5.7e-10  Score=96.67  Aligned_cols=68  Identities=25%  Similarity=0.690  Sum_probs=28.2

Q ss_pred             CCCCCCCCCC--C---CeecccCCCCCceeeecCCCCCC---CCCccCccCCCCCCccCCCceeeecCCCcEEcCCCCCC
Q psy9228         569 PVCAPKPCQN--Y---GICYPTDTSERGYNCSCLTGYSG---DHCEKENNMCMKGDVCKNGGMCKVTPDSYECLCSLGYA  640 (834)
Q Consensus       569 ~~C~~~pC~n--g---g~C~~~~~~~~~~~C~C~~G~~G---~~Ce~~~~~C~~~~pC~ngg~C~~~~~~~~C~C~~g~~  640 (834)
                      +.|..+||.+  +   .+|++..+   +|+|.|++||+|   ..|+ ++++|....||.  ++|++..++|+|.|++||.
T Consensus        25 ~~Cd~neC~~~~~~C~~~C~n~~g---~y~C~C~~Gy~g~~g~~C~-dideC~~~~~C~--~~C~n~~gsy~C~C~~Gy~   98 (107)
T 2w2n_E           25 GAMGTNECLDNNGGCSYVCNDLKI---GYECLCPDGFQLVAQRRCE-DIDECQDPDTCS--QLCVNLEGGYKCQCEEGFQ   98 (107)
T ss_dssp             CCBSCCGGGTGGGGCSSEEECCSB---SCEEECCTTCEEETTTEEE-C--------------------------------
T ss_pred             CCCcCccCcCCCCCCCCEeEeCCC---CeEEECCCCccccCCCccc-cccccCCCCCcC--CeeecCCCCEEEECCCCce
Confidence            3455566653  2   38999887   999999999998   8999 889998534996  7999999999999999998


Q ss_pred             CC
Q psy9228         641 PP  642 (834)
Q Consensus       641 G~  642 (834)
                      |.
T Consensus        99 ~~  100 (107)
T 2w2n_E           99 LD  100 (107)
T ss_dssp             --
T ss_pred             EC
Confidence            74

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}

Probab=98.82  E-value=8.3e-10  Score=102.60  Aligned_cols=31  Identities=26%  Similarity=0.712  Sum_probs=25.7

Q ss_pred             CCCCCCCCCCCCCeecccCCCCCceeeecCCCCCC
Q psy9228         568 SPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSG  602 (834)
Q Consensus       568 ~~~C~~~pC~ngg~C~~~~~~~~~~~C~C~~G~~G  602 (834)
                      +++|+++||+| |+|++..+   +|+|.|++||+|
T Consensus         4 ideC~~~pC~n-g~C~n~~g---~y~C~C~~G~~g   34 (147)
T 2w86_A            4 IDECESSPCIN-GVCKNSPG---SFICECSSESTL   34 (147)
T ss_dssp             CCGGGGCCSBT-SEEEEETT---EEEEECCTTEEE
T ss_pred             CccCcCCCCCC-CEeECCCC---CEEeECCCCccc
Confidence            57888999997 59998876   888888888864

>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1

Probab=98.78  E-value=3.5e-09  Score=75.57  Aligned_cols=40  Identities=33%  Similarity=0.679  Sum_probs=32.0

Q ss_pred             ccCCCCCC---CCCCCCEeccCCCCCceEeeCCCCCCCCCCCCCCC
Q psy9228         137 TCKSSKHN---NCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGE  179 (834)
Q Consensus       137 ~C~~~~~~---pC~n~g~C~~~~~~~~~~C~C~~g~~G~~Ce~~~~  179 (834)
                      +|.   ++   ||+|||+|+.....++|+|.|++||+|.+||.+++
T Consensus         2 ~C~---~~~~~pC~ngg~C~~~~~~~~~~C~C~~G~~G~~Ce~~~~   44 (45)
T 1a3p_A            2 GXP---SSYDGYCLNGGVXMHIESLDSYTCNCVIGYSGDRCQTRDL   44 (45)
T ss_dssp             CCT---TCCSSCCSSSCEEEECTTTSSEEEECCTTEETTTTCEECC
T ss_pred             Ccc---cCCCCCCCCCCEEEeecCCCCEEEEcCCCCcCCcCCcccC
Confidence            466   55   99999999832233789999999999999987664

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A

Probab=98.76  E-value=5e-09  Score=72.38  Aligned_cols=36  Identities=42%  Similarity=1.130  Sum_probs=32.4

Q ss_pred             CccCCCCCCCCCCCCEeccCCCCCceEeeCCCCCCCCCCCC
Q psy9228         136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSV  176 (834)
Q Consensus       136 ~~C~~~~~~pC~n~g~C~~~~~~~~~~C~C~~g~~G~~Ce~  176 (834)
                      ++|.   ++||+|+|+|++..  ++|+|.|++||+|.+||.
T Consensus         4 d~C~---~~pC~ngg~C~~~~--~~~~C~C~~G~~G~~Ce~   39 (39)
T 1edm_B            4 DQCE---SNPCLNGGSCKDDI--NSYECWCPFGFEGKNCEL   39 (39)
T ss_dssp             CTTT---TCCCCTTCEEEEET--TEEEEECCTTCCSTTSCC
T ss_pred             ccCC---CCCCCCCCEeEcCC--CceEeECCCCCcCCccCC
Confidence            5788   89999999999876  889999999999999973

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A

Probab=98.75  E-value=6.6e-09  Score=71.73  Aligned_cols=38  Identities=39%  Similarity=0.963  Sum_probs=35.0

Q ss_pred             CccCCCCCCccCCCceeeecCCCcEEcCCCCCCCCCccc
Q psy9228         608 ENNMCMKGDVCKNGGMCKVTPDSYECLCSLGYAPPNCAK  646 (834)
Q Consensus       608 ~~~~C~~~~pC~ngg~C~~~~~~~~C~C~~g~~G~~Ce~  646 (834)
                      ++++|.+. ||+|+|+|++..++|+|.|++||+|.+||.
T Consensus         2 d~d~C~~~-pC~ngg~C~~~~~~~~C~C~~G~~G~~Ce~   39 (39)
T 1edm_B            2 DGDQCESN-PCLNGGSCKDDINSYECWCPFGFEGKNCEL   39 (39)
T ss_dssp             CCCTTTTC-CCCTTCEEEEETTEEEEECCTTCCSTTSCC
T ss_pred             ccccCCCC-CCCCCCEeEcCCCceEeECCCCCcCCccCC
Confidence            46789888 999999999999999999999999999973

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A

Probab=98.71  E-value=3.2e-09  Score=94.17  Aligned_cols=72  Identities=29%  Similarity=0.645  Sum_probs=57.1

Q ss_pred             CccCCCCCCCCCCCCEeccC-CCCCceEeeCCCCCCCCCCCCC--CCCccCCCCCCCeeecCCCCeEEeCCCCcc---cC
Q psy9228         136 NTCKSSKHNNCINNGLCQDA-ATRIGYTCICPPGFSGDRCSVL--GEPCYPGACGDGSCQDVDGAMKCLCPIGTA---GK  209 (834)
Q Consensus       136 ~~C~~~~~~pC~n~g~C~~~-~~~~~~~C~C~~g~~G~~Ce~~--~~~C~~~~C~~g~C~~~~~~~~C~C~~g~~---G~  209 (834)
                      |+|.   ++||+|  +|++. .  ++|+|.|++||+|..++.+  .++|..+||. ++|++ .++|+|.|++||+   |.
T Consensus         5 deC~---~~pC~~--~C~~~~~--g~y~C~C~~Gy~g~~~~~~~C~~~C~~~~C~-~~C~~-~~~y~C~C~~Gy~~~~g~   75 (118)
T 1dx5_I            5 DPCF---RANCEY--QCQPLDQ--TSYLCVCAEGFAPIPHEPHRCQMFCNQTACP-ADCDP-NTQASCECPEGYILDDGF   75 (118)
T ss_dssp             CGGG---GCCCSS--EEEECSS--SCEEEECCTTEEEETTEEEEEEECCCSSEEE-CEECT-TSTTCEECCTTEEEETTT
T ss_pred             ccCC---CCCCCC--CCCCCCC--CCEEeECCCCccccCCCCCccccccCCCCCC-CcccC-CCCeEeECCCCccCCCCC
Confidence            6888   999996  99997 6  8999999999999865321  1245667776 78998 5899999999999   89


Q ss_pred             cccccccc
Q psy9228         210 RCEQKIKI  217 (834)
Q Consensus       210 ~Ce~~~~~  217 (834)
                      .|+ +++.
T Consensus        76 ~C~-dide   82 (118)
T 1dx5_I           76 ICT-DIDE   82 (118)
T ss_dssp             EEE-ECCH
T ss_pred             ccc-cccc
Confidence            995 4433

>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1

Probab=98.70  E-value=9.3e-09  Score=73.31  Aligned_cols=38  Identities=32%  Similarity=0.749  Sum_probs=33.0

Q ss_pred             CCCCC---CCCCCCeec--ccCCCCCceeeecCCCCCCCCCccCcc
Q psy9228         570 VCAPK---PCQNYGICY--PTDTSERGYNCSCLTGYSGDHCEKENN  610 (834)
Q Consensus       570 ~C~~~---pC~ngg~C~--~~~~~~~~~~C~C~~G~~G~~Ce~~~~  610 (834)
                      +|.++   ||+|||+|+  +..+   +|+|.|++||+|++||.+++
T Consensus         2 ~C~~~~~~pC~ngg~C~~~~~~~---~~~C~C~~G~~G~~Ce~~~~   44 (45)
T 1a3p_A            2 GXPSSYDGYCLNGGVXMHIESLD---SYTCNCVIGYSGDRCQTRDL   44 (45)
T ss_dssp             CCTTCCSSCCSSSCEEEECTTTS---SEEEECCTTEETTTTCEECC
T ss_pred             CcccCCCCCCCCCCEEEeecCCC---CEEEEcCCCCcCCcCCcccC
Confidence            57788   999999998  5555   89999999999999998754

>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A

Probab=98.69  E-value=1.9e-08  Score=74.50  Aligned_cols=43  Identities=40%  Similarity=0.845  Sum_probs=33.3

Q ss_pred             CccCCCCCCCCCCCCEec--cCCCCCceEeeCCCCCCCCCCCCCCCC
Q psy9228         136 NTCKSSKHNNCINNGLCQ--DAATRIGYTCICPPGFSGDRCSVLGEP  180 (834)
Q Consensus       136 ~~C~~~~~~pC~n~g~C~--~~~~~~~~~C~C~~g~~G~~Ce~~~~~  180 (834)
                      ++|.....+||+|||+|+  +..  ++|+|.|++||+|.+||..+..
T Consensus         4 ~~C~~~~~~pC~ngg~C~~~~~~--~~~~C~C~~G~~G~~Ce~~~~~   48 (53)
T 1egf_A            4 PGCPSSYDGYCLNGGVCMHIESL--DSYTCNCVIGYSGDRCQTRDLR   48 (53)
T ss_dssp             CCCCTTSSCSSCSSCEEEEESSS--SCEEEECCTTCCSSSSCCCSCC
T ss_pred             ccCCCCCCCcCCCCcEEEeeCCC--CCEEEECCCCCcCCcCCccCcc
Confidence            467611124999999999  554  8999999999999999876543

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.66  E-value=1e-08  Score=112.57  Aligned_cols=67  Identities=37%  Similarity=0.881  Sum_probs=60.3

Q ss_pred             CccCCCCCCCCCCCCEeccCCCCCceEeeCCCCCC---CCCCCCCCCCcc-CCCCCCCeeecCCCCeEEeCCCCcccC
Q psy9228         136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFS---GDRCSVLGEPCY-PGACGDGSCQDVDGAMKCLCPIGTAGK  209 (834)
Q Consensus       136 ~~C~~~~~~pC~n~g~C~~~~~~~~~~C~C~~g~~---G~~Ce~~~~~C~-~~~C~~g~C~~~~~~~~C~C~~g~~G~  209 (834)
                      |+|.   .+||.++++|.+.+  ++|.|.|++||.   |..|+ ++|||. +.||.+ +|++..++|.|.|++||.+.
T Consensus         1 ~eC~---~~~~~c~~~C~~~~--~~y~C~C~~G~~~~~~~~C~-dideC~~~~~C~~-~C~n~~g~~~C~C~~g~~~~   71 (400)
T 3p5b_L            1 NECL---DNNGGCSHVCNDLK--IGYECLCPDGFQLVAQRRCE-DIDECQDPDTCSQ-LCVNLEGGYKCQCEEGFQLD   71 (400)
T ss_dssp             CCTT---TTGGGCSSEEEECS--SSEEEECCTTEEECSSSCEE-ECCCCSTTSSCSS-CCBCCSSSCBCCCCTTCCCC
T ss_pred             Cccc---CCCCCCCCEeECCC--CCeEEECCCCCCcCCCCccc-CchhhhccCCCCC-ccCCCccceeeecccccccc
Confidence            4788   89999999999987  899999999998   89995 899998 478976 99999999999999999854

>3flp_A SAP-like pentraxin; physiological doubly-stacked heptamer, pentraxin fold, cyclic heptamer, invertebrate lectin, sugar binding protein; 2.30A {Limulus polyphemus} PDB: 3flr_A 3flt_A

Probab=98.65  E-value=6.5e-07  Score=88.57  Aligned_cols=156  Identities=11%  Similarity=0.082  Sum_probs=97.4

Q ss_pred             eeeEEcC---CceeeechhhhhhccCcceEEEEEEeCC-CCeeEEecCCCCCCCCCCcceEEEEEE-CCE--EEEEEEcC
Q psy9228         652 SEVHFLG---EGYVELKKELIEERRNEETIAFDFVTDD-KNALLLWNGQPSYKNGIGREFIAVAVV-NGY--LEYSYDLG  724 (834)
Q Consensus       652 ~~~~F~g---~s~~~~~~~~~~~~~~~~~i~~~frT~~-~~GlLl~~~~~~~~~~~~~~~~~l~l~-~G~--l~~~~~~g  724 (834)
                      ..+.|..   .+|+.+.+.........+++.+++|+.. ..+.||..+...     ....+.|... ++.  ..+.+..+
T Consensus         7 ~~~~Fp~~s~~~yv~l~~~~~~p~l~~fTvc~wv~~~~~~~~~lfSy~~~~-----~~n~l~l~~~~~~~g~~~~~l~i~   81 (217)
T 3flp_A            7 VKISFPGTQNPKFPHLRFMQTLPAVRQLTVCQRIKPFHRNTGYIFSCATSN-----QDNQFITSMYVKSDGTLNLGLQVN   81 (217)
T ss_dssp             EEEEECCCBTTBCCEEEESSCBCCBSEEEEEEEEEESCSSCEEEEEEEETT-----EEEEEEEEEEECTTSEEEEEEEET
T ss_pred             CEEEcCCCCCCCEEEEecCCCCCCCccEEEEEEEEecCCCCeeEEEEECCC-----CCceEEEEEeCCCCcceEEEEEEC
Confidence            3567776   4688876431112347899999999544 566777443321     1235556665 333  33344443


Q ss_pred             CcE-EEEEeCCceecCCCcEEEEEEEEC--CEEEEEEcCeeeecccCCCCccceecCCceEEcCcCCCCCCCCCccCCCc
Q psy9228         725 DGV-VTIKFSKKPVNDGIKHSVNVTRIN--KFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPNMDLMTGGRYVHPM  801 (834)
Q Consensus       725 ~~~-~~l~~s~~~~nDg~wH~V~i~r~~--~~~~l~VD~~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~~~~~~~~~~~F  801 (834)
                      +.. ..+. .+.++.||+||||.++++.  +.++|+|||..............+...+.+.||...+..- ........|
T Consensus        82 g~~~~~~~-~~~~~~~g~W~Hv~~t~d~~~G~~~lYvdG~~~~~~~~~~~g~~i~~~g~l~lG~~~~~~g-g~f~~~~~f  159 (217)
T 3flp_A           82 ASSNKYIS-CPIEIELGQWYHVCHVWSGVDGRMAVYANGSPCGTMENVGKGHQISAGGTVVIGQEQDKIG-GGFEEQESW  159 (217)
T ss_dssp             TCCCEEEE-EEEECCTTSCEEEEEEEETTTTEEEEEETTEEEEEESCSSTTCCBCSCBEEEESSCCSBTT-BCCCGGGCC
T ss_pred             CccceeEE-cccccCCCCEEEEEEEEECCCCEEEEEECCEEecceeccccCcEECCCCEEEeCCcccCCC-CccCCCCce
Confidence            332 3333 3457999999999999996  5899999999876532222222345567899997554210 011235789


Q ss_pred             eEEEEEEEECCce
Q psy9228         802 SGLMMNIHIQNKH  814 (834)
Q Consensus       802 ~GCi~~v~in~~~  814 (834)
                      .|-|.+|+|.+..
T Consensus       160 ~G~i~~v~iw~~a  172 (217)
T 3flp_A          160 SGELSDLQVWDEA  172 (217)
T ss_dssp             CEEEEEEEEESSC
T ss_pred             EEEEeeEEEECcc
Confidence            9999999998864

>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A

Probab=98.65  E-value=1.4e-08  Score=72.33  Aligned_cols=41  Identities=27%  Similarity=0.681  Sum_probs=31.2

Q ss_pred             CccCCCCCCCCCCCCEeccCCCCCceEeeCCCCCCCCCCCCC
Q psy9228         136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVL  177 (834)
Q Consensus       136 ~~C~~~~~~pC~n~g~C~~~~~~~~~~C~C~~g~~G~~Ce~~  177 (834)
                      ++|.+..++||+| |+|.+....++|+|.|++||+|.+||..
T Consensus         4 ~~C~~~~~~pC~n-G~C~~~~~~~~~~C~C~~GytG~~Ce~~   44 (46)
T 1k36_A            4 TKCSSDMNGYCLH-GQCIYLVDMSQNYCRCEVGYTGVRCEHF   44 (46)
T ss_dssp             ECCCTTCCSSCSS-EEEEEETTTTEEEEEECTTCSSTTSCCC
T ss_pred             ccCCCCCCCCCCC-CEeeccCCCCCEEEECCCCCccCCCCcc
Confidence            3565111499999 8999754446899999999999999864

>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A

Probab=98.64  E-value=5.7e-09  Score=80.71  Aligned_cols=47  Identities=23%  Similarity=0.584  Sum_probs=38.4

Q ss_pred             CCCCCCCCCCCCeecccC--CCCCceeeecCCCCCCCCCccCccCCCCC
Q psy9228         569 PVCAPKPCQNYGICYPTD--TSERGYNCSCLTGYSGDHCEKENNMCMKG  615 (834)
Q Consensus       569 ~~C~~~pC~ngg~C~~~~--~~~~~~~C~C~~G~~G~~Ce~~~~~C~~~  615 (834)
                      ++|.++||+|||+|++..  +..++|+|.|++||+|++||.++++|...
T Consensus         7 ~~C~~~pC~ngG~C~~~~~~~~~~~y~C~C~~Gf~G~~Ce~~i~~~~~~   55 (63)
T 1hae_A            7 AEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPMKVQN   55 (63)
T ss_dssp             CHHHHTTSCTTCEEEEEESSSSSCCEEEECCTTEESTTSCEECCSSCTT
T ss_pred             CCCCCCcCCCCcEEecCCccCCCCCEEEECCCCCcCCccCcCcCccccc
Confidence            568899999999999721  11138999999999999999999888654

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*

Probab=98.64  E-value=1.9e-08  Score=114.91  Aligned_cols=138  Identities=20%  Similarity=0.406  Sum_probs=84.8

Q ss_pred             ceeEEEcCCcceeeeeCCcccCCCcceeeeeCCCCCCC-cCCCC--ccCCCCccceEEEEEEcCEEEEeecccc--cccC
Q psy9228          57 ERMMFVDGIGPFSGESQGAFQGLDLSELVYIGAVPDFG-EIHPS--AGFSNGFKGCVSRLKYNKTEFELFKMAV--ERVG  131 (834)
Q Consensus        57 ~g~~cvd~~~~~~~~~~~~~~g~~~~~~~~~gg~p~~~-~~~~~--~~~~~gf~gCi~~~~~~~~~~~~~~~~~--~~~~  131 (834)
                      +++.|+.+    .|.|++||+|.+|+....-.+.+... .+...  .....+---|+     .+ .+.......  ..+.
T Consensus       439 ~~G~C~~g----~C~C~~Gy~G~~Cec~~~~~~~~~~~~~C~~~~~~~~Cs~~G~C~-----~G-~C~C~~~~~~~~G~~  508 (687)
T 3k6s_B          439 GKGFLECG----ICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCV-----CG-QCLCHTSDVPGKLIY  508 (687)
T ss_dssp             GSEEESSS----SEEECSSEESTTSCEESSSCCCSGGGSTTSSSTTSCGGGSSEEEE-----TT-EEEECCCCSTTCCEE
T ss_pred             CCCEEeCC----EeEcCCCCcCCcccccCCcCCccccCCCCCCCCCCCcCCCCCEEe-----CC-EEEcCCCCCCCCCcc
Confidence            45667643    59999999999999543211111111 12110  00011111243     22 233321000  2233


Q ss_pred             CCCC----CccCCCCCCCCCC--CCEeccCCCCCceEeeCCCCCCCCCCCC--CCCCccCC---CCCC-CeeecCCCCeE
Q psy9228         132 VDSC----NTCKSSKHNNCIN--NGLCQDAATRIGYTCICPPGFSGDRCSV--LGEPCYPG---ACGD-GSCQDVDGAMK  199 (834)
Q Consensus       132 ~~~c----~~C~~~~~~pC~n--~g~C~~~~~~~~~~C~C~~g~~G~~Ce~--~~~~C~~~---~C~~-g~C~~~~~~~~  199 (834)
                      ...|    ..|.+....+|.+  +|+|..      ..|.|++||+|.+|+.  ..+.|...   +|.+ |+|.+    ..
T Consensus       509 G~~Ce~~~~~C~~~~~~~C~~~~~G~C~~------g~C~C~~G~~G~~Cec~~~~~~C~~~~g~~Cs~~G~C~~----g~  578 (687)
T 3k6s_B          509 GQYCECDTINCERYNGQVCGGPGRGLCFC------GKCRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCRC----NV  578 (687)
T ss_dssp             STTSCEESSCSCEETTEETSHHHHEEEET------TEEEECTTCCSTTSCSCCSSCTTBCTTCSBTSSSCCBCS----SC
T ss_pred             ccccccccccccCCCCcCcCCCCCCeEEC------CEEEcCCCCcCCCCccCCCCCCCCCCCCCCCCCCCcCCC----CE
Confidence            3555    2575211357999  999985      2799999999999983  46899875   8985 89987    57


Q ss_pred             EeCCCCcccCccccc
Q psy9228         200 CLCPIGTAGKRCEQK  214 (834)
Q Consensus       200 C~C~~g~~G~~Ce~~  214 (834)
                      |.|++||+|+.||+.
T Consensus       579 C~C~~Gy~G~~Ce~c  593 (687)
T 3k6s_B          579 CECHSGYQLPLCQEC  593 (687)
T ss_dssp             BCCSTTCCTTTTCCC
T ss_pred             EECCCCCcCCCCCCC
Confidence            999999999999973

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.62  E-value=3.7e-06  Score=99.43  Aligned_cols=70  Identities=39%  Similarity=1.013  Sum_probs=57.5

Q ss_pred             ccCCCCCCCCCCCC-----EeccCCCCCceEeeCCCCCC---CCCCCCCCCCcc-CCCCCCCeeecCCCCeEEeCCCCcc
Q psy9228         137 TCKSSKHNNCINNG-----LCQDAATRIGYTCICPPGFS---GDRCSVLGEPCY-PGACGDGSCQDVDGAMKCLCPIGTA  207 (834)
Q Consensus       137 ~C~~~~~~pC~n~g-----~C~~~~~~~~~~C~C~~g~~---G~~Ce~~~~~C~-~~~C~~g~C~~~~~~~~C~C~~g~~  207 (834)
                      +|.   .++|.+++     +|.+.+  ++|+|.|++||.   |..|+ ++|||. +.+|. .+|++..++|.|.|++||.
T Consensus       309 ~C~---~~~C~~~~~~C~~~C~~~~--~~y~C~C~~Gy~l~~g~~C~-dideC~~~~~C~-~~C~n~~gsy~C~C~~Gy~  381 (791)
T 3m0c_C          309 ECG---TNECLDNNGGCSHVCNDLK--IGYECLCPDGFQLVAQRRCE-DIDECQDPDTCS-QLCVNLEGGYKCQCEEGFQ  381 (791)
T ss_dssp             TBS---CCSTTTGGGGCSSEEEECS--BSEEEECCTTCEEETTTEEE-CCCCCSSSSSCT-TTCCBCSSCBCCCCCSSEE
T ss_pred             ccc---cccccccccCccccccCCC--CCcccCCCCCCccCCCCccc-cCcccCCCCCCC-CeeecCCCCceeecCCCCE
Confidence            366   78887665     899887  899999999994   89995 899997 35564 4899999999999999996


Q ss_pred             c----Ccccc
Q psy9228         208 G----KRCEQ  213 (834)
Q Consensus       208 G----~~Ce~  213 (834)
                      +    ..|..
T Consensus       382 l~~~~~~C~~  391 (791)
T 3m0c_C          382 LDPHTKACKA  391 (791)
T ss_dssp             CCSSCCCCEE
T ss_pred             eCCCCceeee
Confidence            4    56754

>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}

Probab=98.62  E-value=2.7e-08  Score=112.90  Aligned_cols=67  Identities=12%  Similarity=0.216  Sum_probs=51.1

Q ss_pred             CCCCCCEeccCCCCCceEeeCCCCCCCCCCCCCCCCccCCCCCCCeeecCCCCeEEeCCCCcccCcccccc
Q psy9228         145 NCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGDGSCQDVDGAMKCLCPIGTAGKRCEQKI  215 (834)
Q Consensus       145 pC~n~g~C~~~~~~~~~~C~C~~g~~G~~Ce~~~~~C~~~~C~~g~C~~~~~~~~C~C~~g~~G~~Ce~~~  215 (834)
                      |+.+...|....  ..++|.|++||+|.+||+..+.|...||..++|.+....+.|.|+.  .+..|+.+.
T Consensus       265 p~~g~~~~~~g~--~~g~C~C~~G~~G~~Ce~C~~g~~~~p~~~~~c~~~~~~~~C~C~~--~~~~C~~d~  331 (525)
T 4aqs_A          265 PVDGVNEEVEGM--VHGHCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCNCNE--HSSSCHFDM  331 (525)
T ss_dssp             CC------CCSC--CCCEECCCTTEESSSSCEECTTCCSSCCCCCBTTBCCCCCCCCCTT--SCSEEEECH
T ss_pred             CcCCcccCCCCC--cCccccCcCCCcCCCCcCCCCccCCCccCCCcccCCCcccccccCC--CCCCCCCCc
Confidence            455555566554  7789999999999999999999999999988998888888899974  467776553

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.61  E-value=6e-08  Score=106.42  Aligned_cols=72  Identities=25%  Similarity=0.705  Sum_probs=63.1

Q ss_pred             CCCCCCCCCCCCeecccCCCCCceeeecCCCCC---CCCCccCccCCCCCCccCCCceeeecCCCcEEcCCCCCCCC---
Q psy9228         569 PVCAPKPCQNYGICYPTDTSERGYNCSCLTGYS---GDHCEKENNMCMKGDVCKNGGMCKVTPDSYECLCSLGYAPP---  642 (834)
Q Consensus       569 ~~C~~~pC~ngg~C~~~~~~~~~~~C~C~~G~~---G~~Ce~~~~~C~~~~pC~ngg~C~~~~~~~~C~C~~g~~G~---  642 (834)
                      ++|..+||.++++|++...   +|.|.|++||+   |+.|+ ++++|....||.+  +|++..++|.|.|++||.+.   
T Consensus         1 ~eC~~~~~~c~~~C~~~~~---~y~C~C~~G~~~~~~~~C~-dideC~~~~~C~~--~C~n~~g~~~C~C~~g~~~~~~~   74 (400)
T 3p5b_L            1 NECLDNNGGCSHVCNDLKI---GYECLCPDGFQLVAQRRCE-DIDECQDPDTCSQ--LCVNLEGGYKCQCEEGFQLDPHT   74 (400)
T ss_dssp             CCTTTTGGGCSSEEEECSS---SEEEECCTTEEECSSSCEE-ECCCCSTTSSCSS--CCBCCSSSCBCCCCTTCCCCTTT
T ss_pred             CcccCCCCCCCCEeECCCC---CeEEECCCCCCcCCCCccc-CchhhhccCCCCC--ccCCCccceeeeccccccccccc
Confidence            4799999999999999987   99999999998   89996 7899986459976  99999999999999999854   


Q ss_pred             -Cccc
Q psy9228         643 -NCAK  646 (834)
Q Consensus       643 -~Ce~  646 (834)
                       .|..
T Consensus        75 ~~C~~   79 (400)
T 3p5b_L           75 KACKA   79 (400)
T ss_dssp             SSCCC
T ss_pred             cceee
Confidence             5654

>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A

Probab=98.61  E-value=3.5e-08  Score=73.08  Aligned_cols=41  Identities=37%  Similarity=0.916  Sum_probs=35.3

Q ss_pred             CCCCCCC---CCCCCCeec--ccCCCCCceeeecCCCCCCCCCccCccC
Q psy9228         568 SPVCAPK---PCQNYGICY--PTDTSERGYNCSCLTGYSGDHCEKENNM  611 (834)
Q Consensus       568 ~~~C~~~---pC~ngg~C~--~~~~~~~~~~C~C~~G~~G~~Ce~~~~~  611 (834)
                      +++|.++   ||+|||+|+  +..+   +|+|.|++||+|.+||..+..
T Consensus         3 i~~C~~~~~~pC~ngg~C~~~~~~~---~~~C~C~~G~~G~~Ce~~~~~   48 (53)
T 1egf_A            3 YPGCPSSYDGYCLNGGVCMHIESLD---SYTCNCVIGYSGDRCQTRDLR   48 (53)
T ss_dssp             ECCCCTTSSCSSCSSCEEEEESSSS---CEEEECCTTCCSSSSCCCSCC
T ss_pred             cccCCCCCCCcCCCCcEEEeeCCCC---CEEEECCCCCcCCcCCccCcc
Confidence            3678887   999999999  6665   999999999999999987543

>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A

Probab=98.60  E-value=2.7e-08  Score=97.44  Aligned_cols=62  Identities=29%  Similarity=0.611  Sum_probs=54.3

Q ss_pred             CCCCCCCCEeccCCCCCceEeeCCCC------CCCCCCCCCCCCccCC---CCC-C--CeeecCCCCeEEeCCCCcccCc
Q psy9228         143 HNNCINNGLCQDAATRIGYTCICPPG------FSGDRCSVLGEPCYPG---ACG-D--GSCQDVDGAMKCLCPIGTAGKR  210 (834)
Q Consensus       143 ~~pC~n~g~C~~~~~~~~~~C~C~~g------~~G~~Ce~~~~~C~~~---~C~-~--g~C~~~~~~~~C~C~~g~~G~~  210 (834)
                      +.||.++|+|..      .+|.|.+|      |+|.+||.+.+.|..+   +|. +  |+|.+    ..|.|.+||+|..
T Consensus       142 ~~~Csg~G~C~~------g~C~C~~gw~~~~~~~G~~Ce~~~~~C~~~~g~~C~~~~~G~C~~----g~C~C~~G~~G~~  211 (217)
T 2p28_B          142 SIICSGLGDCVC------GQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFC----GKCRCHPGFEGSA  211 (217)
T ss_dssp             SCBGGGTEEEET------TEEEECCCCSTTCCEESTTSCEESSCSCEETTEETTCTTTEEEET----TEEEECTTEESTT
T ss_pred             CCCCCCCCEEeC------CceECCCCCCCcccEECCCcccCCccCCCCCCCCCCCCCCcEEeC----CeeECCCCCccCC
Confidence            688999999995      27999999      6999999888899876   897 5  89996    3899999999999


Q ss_pred             cccc
Q psy9228         211 CEQK  214 (834)
Q Consensus       211 Ce~~  214 (834)
                      |+..
T Consensus       212 C~~~  215 (217)
T 2p28_B          212 CQHH  215 (217)
T ss_dssp             SCEE
T ss_pred             cCCC
Confidence            9864

>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A

Probab=98.58  E-value=1.7e-08  Score=71.87  Aligned_cols=38  Identities=32%  Similarity=0.652  Sum_probs=33.7

Q ss_pred             CCCCccC---CCCCCCeeecCC--CCeEEeCCCCcccCccccc
Q psy9228         177 LGEPCYP---GACGDGSCQDVD--GAMKCLCPIGTAGKRCEQK  214 (834)
Q Consensus       177 ~~~~C~~---~~C~~g~C~~~~--~~~~C~C~~g~~G~~Ce~~  214 (834)
                      ++++|.+   +||+||+|++..  ++|.|.|++||+|.+||..
T Consensus         2 ~i~~C~~~~~~pC~nG~C~~~~~~~~~~C~C~~GytG~~Ce~~   44 (46)
T 1k36_A            2 SITKCSSDMNGYCLHGQCIYLVDMSQNYCRCEVGYTGVRCEHF   44 (46)
T ss_dssp             CEECCCTTCCSSCSSEEEEEETTTTEEEEEECTTCSSTTSCCC
T ss_pred             ccccCCCCCCCCCCCCEeeccCCCCCEEEECCCCCccCCCCcc
Confidence            4678988   999999999754  7899999999999999975

>3kqr_A Serum amyloid P-component; glycoprotein, disulfide bond, lectin, metal-binding secreted; HET: NAG; 1.50A {Homo sapiens} SCOP: b.29.1.5 PDB: 1lgn_A* 1gyk_A 2a3w_A* 2a3x_A* 2a3y_A* 1sac_A* 3d5o_A* 2w08_A*

Probab=98.56  E-value=2.8e-06  Score=82.96  Aligned_cols=150  Identities=14%  Similarity=0.033  Sum_probs=98.7

Q ss_pred             eeeEEcC---CceeeechhhhhhccCcceEEEEEEeCC-CCeeEEecCCCCCCCCCCcceEEEEE-ECCEEEEEEEcCCc
Q psy9228         652 SEVHFLG---EGYVELKKELIEERRNEETIAFDFVTDD-KNALLLWNGQPSYKNGIGREFIAVAV-VNGYLEYSYDLGDG  726 (834)
Q Consensus       652 ~~~~F~g---~s~~~~~~~~~~~~~~~~~i~~~frT~~-~~GlLl~~~~~~~~~~~~~~~~~l~l-~~G~l~~~~~~g~~  726 (834)
                      ..+.|..   .+|+.+.+.. +.....+++.+++||.. ..+.||..+....     ..-+.|.. .+|.+.+.+  ++.
T Consensus         7 k~l~Fp~~s~~~yv~l~~~~-~~~l~~fTvc~wv~~~~~~~~tlfSy~~~~~-----~nel~l~~~~~~~~~l~i--~g~   78 (204)
T 3kqr_A            7 KVFVFPRESVTDHVNLITPL-EKPLQNFTLCFRAYSDLSRAYSLFSYNTQGR-----DNELLVYKERVGEYSLYI--GRH   78 (204)
T ss_dssp             EEEEECSCCSSCEEEEECCC-CSCBSEEEEEEEEECCCCSCEEEEEEEETTE-----EEEEEEEEEETTEEEEEE--TTE
T ss_pred             CEEEcCCCCCCCEEEEeCCC-CCCcCCEEEEEEEEeCCCCCeEEEEEECCCC-----CceEEEEEcCCCeEEEEE--CCe
Confidence            4678886   4688886432 11247899999999875 5677775443211     22344444 467877766  444


Q ss_pred             EEEEEeCCceecCCCcEEEEEEEEC--CEEEEEEcCeeeecccCCCCccceecCCceEEcCcCCCCCCCCCccCCCceEE
Q psy9228         727 VVTIKFSKKPVNDGIKHSVNVTRIN--KFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPNMDLMTGGRYVHPMSGL  804 (834)
Q Consensus       727 ~~~l~~s~~~~nDg~wH~V~i~r~~--~~~~l~VD~~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~~~~~~~~~~~F~GC  804 (834)
                      ...+.   .+++||+||||.+++..  +.++|+|||....... ......+...+.+.||...+.. .........|.|-
T Consensus        79 ~~~~~---~~~~~g~W~Hv~~twd~~~G~~~lyvdG~~~~~~~-~~~g~~i~~~g~l~lGq~qd~~-gg~f~~~~~f~G~  153 (204)
T 3kqr_A           79 KVTSK---VIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKG-LRQGYFVEAQPKIVLGQEQDSY-GGKFDRSQSFVGE  153 (204)
T ss_dssp             EEEEE---CCCCSSCCEEEEEEEETTTCEEEEEETTEECCCEE-CCTTCCBCSSCEEEESSCCSSS-SCCCCGGGCCCEE
T ss_pred             EEEEe---cccCCCceEEEEEEEECCCCeEEEEECCEEeeeec-cCCCCEECCCcEEEEcccccCC-CCCcCcccceeEE
Confidence            43333   57999999999999995  5899999998765421 1111234556789999765431 1112235789999


Q ss_pred             EEEEEECCce
Q psy9228         805 MMNIHIQNKH  814 (834)
Q Consensus       805 i~~v~in~~~  814 (834)
                      |.+|+|.+..
T Consensus       154 i~~v~iW~~a  163 (204)
T 3kqr_A          154 IGDLYMWDSV  163 (204)
T ss_dssp             EEEEEEESSC
T ss_pred             EeeEEEECcc
Confidence            9999998864

>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D

Probab=98.53  E-value=4.4e-09  Score=77.56  Aligned_cols=44  Identities=20%  Similarity=0.534  Sum_probs=37.4

Q ss_pred             ceeeecCCCCCCCCCccCccCCCCCCccCCCceeee----cCCCcEEcCCCCCCCCCcccc
Q psy9228         591 GYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKV----TPDSYECLCSLGYAPPNCAKR  647 (834)
Q Consensus       591 ~~~C~C~~G~~G~~Ce~~~~~C~~~~pC~ngg~C~~----~~~~~~C~C~~g~~G~~Ce~~  647 (834)
                      -++|.|++||+            ++ ||+|||+|++    ..++|+|.|++||+|.+||..
T Consensus         2 ~~~C~C~~g~~------------~~-pC~NGGtC~~~~~~~~~~y~C~C~~Gf~G~~Ce~~   49 (52)
T 3ca7_A            2 FPTYKCPETFD------------AW-YCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYK   49 (52)
T ss_dssp             CCCBCCCHHHH------------HH-TSCTTCEEEEEEETTEEEEEEECCTTEESTTSCEE
T ss_pred             CeeeECCCCCc------------CC-cCCCCCEEecCccCCCCCEEEECCCCCcCCCCccc
Confidence            35799999997            23 9999999996    356899999999999999964

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.53  E-value=3.6e-08  Score=107.75  Aligned_cols=74  Identities=26%  Similarity=0.692  Sum_probs=21.1

Q ss_pred             CCCCCCCCCCCCCeecccCCCCCceeeecCCCCC----CCCCccCccCCCCCCccCCCceeeecCCCcEEcCCCCCC---
Q psy9228         568 SPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYS----GDHCEKENNMCMKGDVCKNGGMCKVTPDSYECLCSLGYA---  640 (834)
Q Consensus       568 ~~~C~~~pC~ngg~C~~~~~~~~~~~C~C~~G~~----G~~Ce~~~~~C~~~~pC~ngg~C~~~~~~~~C~C~~g~~---  640 (834)
                      +++|.++||....+|.+..+   +|+|.|++||+    |+.| .++++|....||.++  |++..++|+|.|++||.   
T Consensus         3 ~~~C~~~~~~c~~~C~~~~g---~~~C~C~~G~~l~~~~~~C-~d~~eC~~~~~C~~~--C~~~~g~~~C~C~~g~~l~~   76 (386)
T 3v65_B            3 EENCNVNNGGCAQKCQMIRG---AVQCTCHTGYRLTEDGRTC-QDVNECAEEGYCSQG--CTNSEGAFQCWCEAGYELRP   76 (386)
T ss_dssp             -----------------------------------------------------CCTTE--EC-----CCEECCTTEEECT
T ss_pred             cCcccCCCCCCCCCCcCCCC---CcEeECCCCceECCCCCcc-CccceeCCcCcccCc--CCCCCCCCeEEECCCceEcC
Confidence            47899888777779977765   89999999999    9999 678999744499875  99999999999999998   


Q ss_pred             -CCCcccc
Q psy9228         641 -PPNCAKR  647 (834)
Q Consensus       641 -G~~Ce~~  647 (834)
                       |..|+..
T Consensus        77 d~~~C~~~   84 (386)
T 3v65_B           77 DRRSCKAL   84 (386)
T ss_dssp             TSSCEEEC
T ss_pred             CCCeECCc
Confidence             8999753

>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*

Probab=98.52  E-value=2.8e-08  Score=73.14  Aligned_cols=36  Identities=28%  Similarity=0.771  Sum_probs=29.2

Q ss_pred             CCCCCCCCEeccCCCCCceEeeCCCCCCCCCCCCCC
Q psy9228         143 HNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLG  178 (834)
Q Consensus       143 ~~pC~n~g~C~~~~~~~~~~C~C~~g~~G~~Ce~~~  178 (834)
                      ++||+|||+|......++|+|.|++||+|.+||..+
T Consensus        11 ~~pC~nGG~C~~~~~~~~~~C~C~~GytG~~Ce~~~   46 (53)
T 1nql_B           11 DGYCLHDGVCMYIEALDKYACNCVVGYIGERCQYRD   46 (53)
T ss_dssp             CCEECTTCEEEEETTTTEEEEEECTTEESTTSCEEC
T ss_pred             CCCCCCCeEEeeecCCCCEEEecCCCCcCCCCCcCC
Confidence            899999999983222378999999999999998643

>3pvn_A C-reactive protein; pentraxin family, immune system; 1.98A {Homo sapiens} SCOP: b.29.1.5 PDB: 1gnh_A 1lj7_A 3l2y_A 1b09_A 3pvo_A

Probab=98.52  E-value=3.3e-06  Score=82.63  Aligned_cols=150  Identities=13%  Similarity=0.065  Sum_probs=98.9

Q ss_pred             eeeEEcC---CceeeechhhhhhccCcceEEEEEEeCC---CCeeEEecCCCCCCCCCCcceEEEEEE-CCEEEEEEEcC
Q psy9228         652 SEVHFLG---EGYVELKKELIEERRNEETIAFDFVTDD---KNALLLWNGQPSYKNGIGREFIAVAVV-NGYLEYSYDLG  724 (834)
Q Consensus       652 ~~~~F~g---~s~~~~~~~~~~~~~~~~~i~~~frT~~---~~GlLl~~~~~~~~~~~~~~~~~l~l~-~G~l~~~~~~g  724 (834)
                      ..+.|.+   .+|+.+.+.... ....+++.++++|..   ..+.||..+....     ..-+.|.+. +|.+.+.+  +
T Consensus         7 k~l~Fp~~s~~~yv~l~~~~~~-~l~~fTvc~wv~~~~~~~~~~~lfSy~~~~~-----~n~l~l~~~~~g~~~l~i--~   78 (206)
T 3pvn_A            7 KAFVFPKESDTSYVSLKAPLTK-PLKAFTVCLHFYTELSSTRGYSIFSYATKRQ-----DNEILIFWSKDIGYSFTV--G   78 (206)
T ss_dssp             EEEEECSCCSSCEEEECCCCCS-CBSEEEEEEEEEESGGGTCCEEEEEEEETTE-----EEEEEEEEETTTEEEEEE--T
T ss_pred             CEEEcCCCCCCCEEEEecCCCC-CcCCEEEEEEEEecCCCCCcEEEEEEEcCCC-----CCEEEEEEcCCCeEEEEE--C
Confidence            4678887   478888654221 247899999999975   4778885443211     234555664 67777766  4


Q ss_pred             CcEEEEEeCCceecCCCcEEEEEEEEC--CEEEEEEcCeeeecccCCCCccceecCCceEEcCcCCCCCCCCCccCCCce
Q psy9228         725 DGVVTIKFSKKPVNDGIKHSVNVTRIN--KFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPNMDLMTGGRYVHPMS  802 (834)
Q Consensus       725 ~~~~~l~~s~~~~nDg~wH~V~i~r~~--~~~~l~VD~~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~~~~~~~~~~~F~  802 (834)
                      +....+.   .+++||+||||.+++..  +.++|+|||....... ......+...+.+.||...+..- ........|.
T Consensus        79 g~~~~~~---~~~~~g~W~Hv~~twd~~~G~~~lyvdG~~~~~~~-~~~g~~i~~~g~l~lGq~qd~~g-g~f~~~~~f~  153 (206)
T 3pvn_A           79 GSEILFE---VPEVTVAPVHICTSWESASGIVEFWVDGKPRVRKS-LKKGYTVGAEASIILGQEQDSFG-GNFEGSQSLV  153 (206)
T ss_dssp             TEEEEEE---CSSCCSSCEEEEEEEETTTCEEEEEETTEECCCEE-CCTTCCBCSSCEEEESSCCSBTT-BCCCGGGCCC
T ss_pred             CeEEEEe---ccCCCCceEEEEEEEECCCCeEEEEECCEEccccc-ccCCcEECCCCEEEEccccccCC-CCcCCccceE
Confidence            4343333   56899999999999996  5899999998865421 11112345567899986543210 0112357899


Q ss_pred             EEEEEEEECCce
Q psy9228         803 GLMMNIHIQNKH  814 (834)
Q Consensus       803 GCi~~v~in~~~  814 (834)
                      |-|.+|+|.+..
T Consensus       154 G~i~~v~iw~~a  165 (206)
T 3pvn_A          154 GDIGNVNMWDFV  165 (206)
T ss_dssp             EEEEEEEEESSC
T ss_pred             EEEeeEEEECcc
Confidence            999999998864

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A

Probab=98.45  E-value=2.3e-08  Score=94.46  Aligned_cols=71  Identities=37%  Similarity=0.881  Sum_probs=55.4

Q ss_pred             CccCCCCCCCCCCCCEeccCCCCCceEeeCCCCCC----CCCCCCCCCC--ccCC--CCC---CCeeecCCC----CeEE
Q psy9228         136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFS----GDRCSVLGEP--CYPG--ACG---DGSCQDVDG----AMKC  200 (834)
Q Consensus       136 ~~C~~~~~~pC~n~g~C~~~~~~~~~~C~C~~g~~----G~~Ce~~~~~--C~~~--~C~---~g~C~~~~~----~~~C  200 (834)
                      |+|..  .+||. +|+|++.+  ++|+|.|++||+    |.+|+ ++++  |...  ||.   +++|++..+    +|+|
T Consensus         4 deC~~--~~~C~-~~~C~n~~--gsy~C~C~~Gy~~~~~g~~C~-d~~~~~C~~~~~~c~~~~~~~C~~~~~~~~~~~~C   77 (162)
T 1uzk_A            4 NECLD--PTTCI-SGNCVNTP--GSYICDCPPDFELNPTRVGCV-DTRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASC   77 (162)
T ss_dssp             CGGGS--TTSSB-TSEEEEET--TEEEEECCTTCEECTTSSBEE-CCCCEEEEEEC----------CEEEEEEEECHHHH
T ss_pred             ccCCC--CCCCC-CCEeECCC--CCEEEeCCCCCeECCCCCccc-CCCCCcccCCCcccCCCCCCcccCCcCCcccCcee
Confidence            67862  48997 68999987  899999999998    89997 6776  9864  463   479999876    8999


Q ss_pred             eCCCCcc-cCccc
Q psy9228         201 LCPIGTA-GKRCE  212 (834)
Q Consensus       201 ~C~~g~~-G~~Ce  212 (834)
                      .|++||. |..|+
T Consensus        78 ~C~~G~~~~~~C~   90 (162)
T 1uzk_A           78 CCSLGKAWGTPCE   90 (162)
T ss_dssp             HTTTCCEETTTTE
T ss_pred             eCCCCCCcCCCcc
Confidence            9999998 77775

>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A

Probab=98.45  E-value=3.4e-08  Score=74.62  Aligned_cols=37  Identities=27%  Similarity=0.678  Sum_probs=33.5

Q ss_pred             CccCCCCCCCCCCC--CEeccCCCCCceEeeCCCCCC-CCCCCCC
Q psy9228         136 NTCKSSKHNNCINN--GLCQDAATRIGYTCICPPGFS-GDRCSVL  177 (834)
Q Consensus       136 ~~C~~~~~~pC~n~--g~C~~~~~~~~~~C~C~~g~~-G~~Ce~~  177 (834)
                      |+|.   ++||+||  |+|++..  ++|+|.|++||+ |.+|+..
T Consensus        12 d~C~---snPC~nga~gtC~~~~--g~y~C~C~~Gy~~G~~C~~~   51 (61)
T 2k2s_B           12 AACS---SNPCGPEAAGTCKETN--SGYICRCNQGYRISLDGTGN   51 (61)
T ss_dssp             CHHH---HCSSCSSSCCEEEECS--SEEEEECCTTEEEEECSSSC
T ss_pred             CcCc---CCCCcCCCccccccCC--CceEeECCCCCccCCCCCCC
Confidence            6898   9999999  8999986  889999999999 9999753

>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D

Probab=98.44  E-value=1.5e-08  Score=74.74  Aligned_cols=42  Identities=36%  Similarity=0.660  Sum_probs=28.2

Q ss_pred             eEeeCCCCCCCCCCCCCCCCccCCCCCC-Ceeec----CCCCeEEeCCCCcccCccccc
Q psy9228         161 YTCICPPGFSGDRCSVLGEPCYPGACGD-GSCQD----VDGAMKCLCPIGTAGKRCEQK  214 (834)
Q Consensus       161 ~~C~C~~g~~G~~Ce~~~~~C~~~~C~~-g~C~~----~~~~~~C~C~~g~~G~~Ce~~  214 (834)
                      ++|.|++||+            ++||+| |+|++    ..++|.|.|+.||+|.+||..
T Consensus         3 ~~C~C~~g~~------------~~pC~NGGtC~~~~~~~~~~y~C~C~~Gf~G~~Ce~~   49 (52)
T 3ca7_A            3 PTYKCPETFD------------AWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYK   49 (52)
T ss_dssp             CCBCCCHHHH------------HHTSCTTCEEEEEEETTEEEEEEECCTTEESTTSCEE
T ss_pred             eeeECCCCCc------------CCcCCCCCEEecCccCCCCCEEEECCCCCcCCCCccc
Confidence            3577777775            567776 57775    235677777777777777754

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=98.44  E-value=2.2e-08  Score=111.09  Aligned_cols=63  Identities=43%  Similarity=1.006  Sum_probs=27.6

Q ss_pred             CccCCCCCCCCCCCCEeccCCCCCceEeeCCCCCCCCCCCCCCCCccCCCCCC-CeeecCCCCeEEeCCCCcccCccccc
Q psy9228         136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYPGACGD-GSCQDVDGAMKCLCPIGTAGKRCEQK  214 (834)
Q Consensus       136 ~~C~~~~~~pC~n~g~C~~~~~~~~~~C~C~~g~~G~~Ce~~~~~C~~~~C~~-g~C~~~~~~~~C~C~~g~~G~~Ce~~  214 (834)
                      +.|.    .||.| |+|.+.     ++|.|++||+|.+|+  +++|.+ ||.| |+|++.   +.|.|++||+|..||..
T Consensus       393 ~~C~----~~C~n-G~C~~~-----~~C~C~~G~~G~~C~--~~~C~~-~C~~~g~C~~~---~~C~C~~G~~G~~C~~~  456 (463)
T 2wg3_C          393 SECS----RLCRN-GYCTPT-----GKCCCSPGWEGDFCR--TAKCEP-ACRHGGVCVRP---NKCLCKKGYLGPQCEQV  456 (463)
T ss_dssp             CHHH----HHCCS-EEECTT-----SCEEECTTEESTTSC--EECC----------------------------------
T ss_pred             cccc----CCCCC-CccCCC-----CeECCCCCcCCCcCC--cCcCCC-CCCCCCEECCC---CEEECCCCcccCCCCCC
Confidence            4675    37998 899853     489999999999996  458988 9996 799975   69999999999999975

>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A

Probab=98.43  E-value=5.3e-08  Score=73.55  Aligned_cols=39  Identities=21%  Similarity=0.565  Sum_probs=35.5

Q ss_pred             CCCCCccCCCCCC---CeeecCCCCeEEeCCCCcc-cCccccc
Q psy9228         176 VLGEPCYPGACGD---GSCQDVDGAMKCLCPIGTA-GKRCEQK  214 (834)
Q Consensus       176 ~~~~~C~~~~C~~---g~C~~~~~~~~C~C~~g~~-G~~Ce~~  214 (834)
                      +++|+|.++||+|   |+|++..++|.|.|++||+ |.+|+..
T Consensus         9 ~~~d~C~snPC~nga~gtC~~~~g~y~C~C~~Gy~~G~~C~~~   51 (61)
T 2k2s_B            9 ETPAACSSNPCGPEAAGTCKETNSGYICRCNQGYRISLDGTGN   51 (61)
T ss_dssp             TSCCHHHHCSSCSSSCCEEEECSSEEEEECCTTEEEEECSSSC
T ss_pred             CCCCcCcCCCCcCCCccccccCCCceEeECCCCCccCCCCCCC
Confidence            4679999999996   5999999999999999999 9999865

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=98.40  E-value=2.6e-08  Score=110.43  Aligned_cols=64  Identities=38%  Similarity=1.040  Sum_probs=27.5

Q ss_pred             CCCCCCCCCCCCeecccCCCCCceeeecCCCCCCCCCccCccCCCCCCccCCCceeeecCCCcEEcCCCCCCCCCcccc
Q psy9228         569 PVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDSYECLCSLGYAPPNCAKR  647 (834)
Q Consensus       569 ~~C~~~pC~ngg~C~~~~~~~~~~~C~C~~G~~G~~Ce~~~~~C~~~~pC~ngg~C~~~~~~~~C~C~~g~~G~~Ce~~  647 (834)
                      +.|.. ||.| |+|.+      .++|.|++||+|..|+.  +.|.+  ||.|+|+|++.   ++|.|++||+|..||..
T Consensus       393 ~~C~~-~C~n-G~C~~------~~~C~C~~G~~G~~C~~--~~C~~--~C~~~g~C~~~---~~C~C~~G~~G~~C~~~  456 (463)
T 2wg3_C          393 SECSR-LCRN-GYCTP------TGKCCCSPGWEGDFCRT--AKCEP--ACRHGGVCVRP---NKCLCKKGYLGPQCEQV  456 (463)
T ss_dssp             CHHHH-HCCS-EEECT------TSCEEECTTEESTTSCE--ECC-----------------------------------
T ss_pred             ccccC-CCCC-CccCC------CCeECCCCCcCCCcCCc--CcCCC--CCCCCCEECCC---CEEECCCCcccCCCCCC
Confidence            45654 7998 79985      35899999999999974  57975  99999999864   79999999999999975

>2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615 antibody, FAB, ternary complex, immune SY hydrolase; HET: PGE NAG FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A* 3laq_A* 1kdu_A

Probab=98.39  E-value=1.6e-07  Score=83.07  Aligned_cols=62  Identities=24%  Similarity=0.544  Sum_probs=49.0

Q ss_pred             CCCCCCEeccCCCCCce-EeeCCCCCCCCCCCCCCCCccCCCCCCCeeecCCCCeEEeCCCCcccCccccc
Q psy9228         145 NCINNGLCQDAATRIGY-TCICPPGFSGDRCSVLGEPCYPGACGDGSCQDVDGAMKCLCPIGTAGKRCEQK  214 (834)
Q Consensus       145 pC~n~g~C~~~~~~~~~-~C~C~~g~~G~~Ce~~~~~C~~~~C~~g~C~~~~~~~~C~C~~g~~G~~Ce~~  214 (834)
                      ||+|||+|++.....+| +|.|++||+|.+||.+++    .+|.++    ....|++.|..+++|..|+.-
T Consensus         2 pC~nggtC~~~~~~~~~~~C~Cp~g~~G~~Ce~~~~----~~C~~g----~G~~YrG~~~~t~sG~~Cq~W   64 (122)
T 2fd6_A            2 DCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDKS----KTCYEG----NGHFYRGKASTDTMGRPCLPW   64 (122)
T ss_dssp             CCCSSCEEEECTTTTTCEEEECCTTEESTTSCEESS----CCSBCS----SCTTCCSCCCBBTTSCBBCCT
T ss_pred             CCCCcCCcCCCcccCCCCCccCCCCCCCccccccCc----CCCccc----ccccceeeccccccCCcccCc
Confidence            89999999886423456 999999999999998765    234332    235799999999999999864

>2erf_A Thrombospondin-1; TSP-1, N-terminal TSPN, HBD, sugar binding protein; 1.45A {Homo sapiens} SCOP: b.29.1.4 PDB: 2es3_A 1z78_A

Probab=98.35  E-value=7e-06  Score=80.43  Aligned_cols=125  Identities=11%  Similarity=0.084  Sum_probs=88.0

Q ss_pred             CcceEEEEEEeC-CCCeeEEecCCCCCCCCCCcceEEEEEE--CCEEEEEEEcCCcEEEEEeCCceecCCCcEEEEEEEE
Q psy9228         674 NEETIAFDFVTD-DKNALLLWNGQPSYKNGIGREFIAVAVV--NGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVTRI  750 (834)
Q Consensus       674 ~~~~i~~~frT~-~~~GlLl~~~~~~~~~~~~~~~~~l~l~--~G~l~~~~~~g~~~~~l~~s~~~~nDg~wH~V~i~r~  750 (834)
                      ..+.|.+.||.. ...|.||.+....    ....++.|.+.  ...|.|.|...++...+...+.++.||+||+|.+...
T Consensus        62 ~eFsi~~t~r~~~~~~~~LfsI~~~~----~~~~ql~l~l~g~~~~l~~~y~~~g~~~~~~f~~v~l~dg~WH~l~l~V~  137 (209)
T 2erf_A           62 KGFLLLASLRQMKKTRGTLLALERKD----HSGQVFSVVSNGKAGTLDLSLTVQGKQHVVSVEEALLATGQWKSITLFVQ  137 (209)
T ss_dssp             TEEEEEEEEEECTTCEEEEEEEEETT----SSCEEEEEEEETTTTEEEEEEEETTEEEEEEESSCCCCSSSEEEEEEEEE
T ss_pred             CCEEEEEEEEcCCCCCceEEEEEcCC----CCEEEEEEEEcCCCCEEEEEEcCCCCEEEEEEeccccCCCcEEEEEEEEE
Confidence            678888999964 4677777555432    11467888886  4478898866555555555667899999999999999


Q ss_pred             CCEEEEEEcCeeeecccCCCCc-cceec----CCceEEcCcCCCCCCCCCccCCCceEEEEEEEEC
Q psy9228         751 NKFGSLEVDSVIVGKGESPGSQ-DVINT----RGNIYLGGTPNMDLMTGGRYVHPMSGLMMNIHIQ  811 (834)
Q Consensus       751 ~~~~~l~VD~~~~~~~~~~~~~-~~l~~----~~~lyiGG~p~~~~~~~~~~~~~F~GCi~~v~in  811 (834)
                      ++.++|+||-..+......... ..++.    .+.+|||-....        .. |.|=|++|+|-
T Consensus       138 ~~~v~L~vDC~~~~~~~l~~~~~~~~~~~~~~~~~~~iGq~~~~--------~~-F~G~lq~l~i~  194 (209)
T 2erf_A          138 EDRAQLYIDCEKMENAELDVPIQSVFTRDLASIARLRIAKGGVN--------DN-FQGVLQNVRFV  194 (209)
T ss_dssp             TTEEEEEETTTEEEEEECSSCGGGTCCTTHHHHEEEEESCCTTT--------CB-CCEEEEEEEEE
T ss_pred             CCEEEEEEcCeEeEeEEccCCchhccccccCCceEEEEecCCCC--------CC-CeEEeEEEEEE
Confidence            9999999999887654332211 22211    357899964332        23 99999999983

>1za4_A Thrombospondin 1; TSP-1, NTSP-1, HBD, arixtra, cell adhesion; HET: SGN; 1.90A {Homo sapiens} SCOP: b.29.1.4 PDB: 2ouh_A 2ouj_A

Probab=98.34  E-value=6.2e-06  Score=83.00  Aligned_cols=125  Identities=11%  Similarity=0.087  Sum_probs=85.8

Q ss_pred             CcceEEEEEEeCC-CCeeEEecCCCCCCCCCCcceEEEEEE--CCEEEEEEEcCCcEEEEEeCCceecCCCcEEEEEEEE
Q psy9228         674 NEETIAFDFVTDD-KNALLLWNGQPSYKNGIGREFIAVAVV--NGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVTRI  750 (834)
Q Consensus       674 ~~~~i~~~frT~~-~~GlLl~~~~~~~~~~~~~~~~~l~l~--~G~l~~~~~~g~~~~~l~~s~~~~nDg~wH~V~i~r~  750 (834)
                      ..+.|.+.||... ..|.||...+...    ...++.|.+.  ...|.|.|...++...+......+.||+||+|.+...
T Consensus        72 ~eFsil~tlr~~~~~~g~LfsI~~~~g----~~~ql~l~~~G~~~~l~~~Y~~~g~~~~~~f~~~~L~Dg~WH~lalsV~  147 (251)
T 1za4_A           72 KGFLLLASLRQMKKTRGTLLALERKDH----SGQVFSVVSNGKAGTLDLSLTVQGKQHVVSVEEALLATGQWKSITLFVQ  147 (251)
T ss_dssp             TEEEEEEEEEECTTCEEEEEEEEETTS----SCEEEEEEEETTTTEEEEEEEETTEEEEEEESSCCCCSSSCEEEEEEEE
T ss_pred             CcEEEEEEEEecCCCCeEEEEEEeCCC----CEEEEEEEECCCCcEEEEEEEcCCCeeeEEEecccccCCCEEEEEEEEE
Confidence            6788889999654 6678886654321    1346655543  2378888876655554554567899999999999999


Q ss_pred             CCEEEEEEcCeeeecccCCCCc-cce----ecCCceEEcCcCCCCCCCCCccCCCceEEEEEEEEC
Q psy9228         751 NKFGSLEVDSVIVGKGESPGSQ-DVI----NTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNIHIQ  811 (834)
Q Consensus       751 ~~~~~l~VD~~~~~~~~~~~~~-~~l----~~~~~lyiGG~p~~~~~~~~~~~~~F~GCi~~v~in  811 (834)
                      +..++|+||-..+......... ..+    ...+.++||-....        .. |.|=|++|+|-
T Consensus       148 ~~~VtLyvDC~~~~~~~l~~~~~~i~~~~~~~~~~~~iGq~~~~--------~~-F~G~lq~l~i~  204 (251)
T 1za4_A          148 EDRAQLYIDCEKMENAELDVPIQSVFTRDLASIARLRIAKGGVN--------DN-FQGVLQNVRFV  204 (251)
T ss_dssp             TTEEEEEETTSCCEEEECSSCGGGTSCTTGGGTEEEEESCCSTT--------CB-CCEEEEEEEEE
T ss_pred             CCEEEEEECCcccceeeccCccccccccccCCCcEEEEEecCCC--------CC-CeEEeEEEEEE
Confidence            9999999999887654332211 222    12457899964322        24 99999999983

>2v73_A CBM40, putative EXO-alpha-sialidase; carbohydrate-binding module, bacterial pathogen, sialic acid, sugar-binding protein; HET: SIA; 2.2A {Clostridium perfringens}

Probab=98.33  E-value=3e-05  Score=72.62  Aligned_cols=133  Identities=15%  Similarity=0.187  Sum_probs=92.8

Q ss_pred             CcceEEEEEEeCCCCe-eEEecCCCCCCCCCCcceEEEEEECCEEEEEEEcCCcE--EEEEeCCceecCCCcEEEEEEEE
Q psy9228         674 NEETIAFDFVTDDKNA-LLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGV--VTIKFSKKPVNDGIKHSVNVTRI  750 (834)
Q Consensus       674 ~~~~i~~~frT~~~~G-lLl~~~~~~~~~~~~~~~~~l~l~~G~l~~~~~~g~~~--~~l~~s~~~~nDg~wH~V~i~r~  750 (834)
                      ...+|.|+||+.++.. -||.+....    ....|+.|+|.+|.+.+.+.-..+.  .....+.....+++||+|.+..+
T Consensus        40 ~~gTI~v~fks~~~~~q~LfSIsN~k----~~n~yf~lyi~~g~lg~e~R~~~~~~~~~~~~~a~v~~~~~wntvaf~~d  115 (191)
T 2v73_A           40 EEGTIVTRFNMNDTSIQSLIGLSDGN----KANNYFSLYVSGGKVGYELRRQEGNGDFNVHHSADVTFNRGINTLALKIE  115 (191)
T ss_dssp             SSEEEEEEEEECCCSCEEEEEEECTT----CSSCEEEEEECSSEEEEEEEECTTSSCEEEEEEEECCCCSSCEEEEEEEE
T ss_pred             CCcEEEEEEecCCCcceEEEEccCCC----CccceEEEEEeCCEEEEEEecCCCceeeeeecccceecCCceEEEEEEEc
Confidence            6788999999988332 566555432    2478999999999999988763332  22221222223449999999998


Q ss_pred             C-CEEEEEEcCeeeecccCCC--CccceecCCceEEcCcCCCCCCCCCccCCCceEEEEEEEECCcee
Q psy9228         751 N-KFGSLEVDSVIVGKGESPG--SQDVINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNIHIQNKHI  815 (834)
Q Consensus       751 ~-~~~~l~VD~~~~~~~~~~~--~~~~l~~~~~lyiGG~p~~~~~~~~~~~~~F~GCi~~v~in~~~~  815 (834)
                      + +..+|+|||+.+.....+.  ....+ -...+.||+.....    +...-+|.|=|++|.|-++.+
T Consensus       116 ~~~~~~ly~NG~~V~t~~~~~~~fi~~i-~ln~~~IG~~~r~s----g~~~y~F~G~Id~~~iYn~aL  178 (191)
T 2v73_A          116 KGIGAKIFLNGSLVKTVSDPNIKFLNAI-NLNSGFIGKTDRAN----GYNEYLFRGNIDFMNIYDKPV  178 (191)
T ss_dssp             TTTEEEEEETTEEEEEEECTTCCCGGGS-CCCEEEESSCCCCS----SSCCCCCCEEEEEEEEESSCC
T ss_pred             CCccEEEEECCEEEEEEecccccceeec-CCceEEEcceeecC----CceeeccCCeEEEEEEEcCcC
Confidence            6 6999999999987764332  22334 33589999977642    234567999999999987643

>2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615 antibody, FAB, ternary complex, immune SY hydrolase; HET: PGE NAG FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A* 3laq_A* 1kdu_A

Probab=98.31  E-value=3.3e-07  Score=81.06  Aligned_cols=59  Identities=25%  Similarity=0.582  Sum_probs=48.7

Q ss_pred             CCCCCCeecccC--CCCCce-eeecCCCCCCCCCccCccCCCCCCccCCCceeeecCCCcEEcCCCCCCCCCccc
Q psy9228         575 PCQNYGICYPTD--TSERGY-NCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDSYECLCSLGYAPPNCAK  646 (834)
Q Consensus       575 pC~ngg~C~~~~--~~~~~~-~C~C~~G~~G~~Ce~~~~~C~~~~pC~ngg~C~~~~~~~~C~C~~g~~G~~Ce~  646 (834)
                      ||+|||+|++..  .   +| +|.|++||+|++||++++    . +|.++     ....|++.|..+++|..|+.
T Consensus         2 pC~nggtC~~~~~~~---~~~~C~Cp~g~~G~~Ce~~~~----~-~C~~g-----~G~~YrG~~~~t~sG~~Cq~   63 (122)
T 2fd6_A            2 DCLNGGTCVSNKYFS---NIHWCNCPKKFGGQHCEIDKS----K-TCYEG-----NGHFYRGKASTDTMGRPCLP   63 (122)
T ss_dssp             CCCSSCEEEECTTTT---TCEEEECCTTEESTTSCEESS----C-CSBCS-----SCTTCCSCCCBBTTSCBBCC
T ss_pred             CCCCcCCcCCCcccC---CCCCccCCCCCCCccccccCc----C-CCccc-----ccccceeeccccccCCcccC
Confidence            899999998874  4   56 999999999999999865    1 55442     23579999999999999985

>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*

Probab=98.30  E-value=2.4e-07  Score=68.11  Aligned_cols=35  Identities=29%  Similarity=0.838  Sum_probs=30.3

Q ss_pred             CCCCCCCCCeec--ccCCCCCceeeecCCCCCCCCCccCc
Q psy9228         572 APKPCQNYGICY--PTDTSERGYNCSCLTGYSGDHCEKEN  609 (834)
Q Consensus       572 ~~~pC~ngg~C~--~~~~~~~~~~C~C~~G~~G~~Ce~~~  609 (834)
                      .++||+|||+|+  +..+   +|+|.|++||+|++||..+
T Consensus        10 ~~~pC~nGG~C~~~~~~~---~~~C~C~~GytG~~Ce~~~   46 (53)
T 1nql_B           10 HDGYCLHDGVCMYIEALD---KYACNCVVGYIGERCQYRD   46 (53)
T ss_dssp             TCCEECTTCEEEEETTTT---EEEEEECTTEESTTSCEEC
T ss_pred             CCCCCCCCeEEeeecCCC---CEEEecCCCCcCCCCCcCC
Confidence            368999999998  5555   8999999999999999763

>2uur_A Collagen alpha-1(IX) chain; glycoprotein, hydroxylation, structural protein, NC4, collagen IX, polymorphism, extracellular matrix; 1.8A {Homo sapiens}

Probab=98.15  E-value=6.7e-05  Score=75.09  Aligned_cols=148  Identities=14%  Similarity=0.067  Sum_probs=97.9

Q ss_pred             eeeEEcCCceeeechhhhhh--ccCcceEEEEEE-eCCCCe---eEEecCCCCCCCCCCcceEEEEEE--CCEEEEEEEc
Q psy9228         652 SEVHFLGEGYVELKKELIEE--RRNEETIAFDFV-TDDKNA---LLLWNGQPSYKNGIGREFIAVAVV--NGYLEYSYDL  723 (834)
Q Consensus       652 ~~~~F~g~s~~~~~~~~~~~--~~~~~~i~~~fr-T~~~~G---lLl~~~~~~~~~~~~~~~~~l~l~--~G~l~~~~~~  723 (834)
                      .++.|..+..+..+....-.  ....+.|.+.|| .....+   .||-+.+..     +..++.|.|.  ...|.|.|..
T Consensus        62 ~Ay~l~~~a~l~~pt~~~fP~glp~eFsil~tlr~~~~~~~~~~~L~sI~d~~-----~~~qlgv~l~g~~~~l~~~y~~  136 (245)
T 2uur_A           62 VAYKLGNNVDFRIPTRNLYPSGLPEEYSFLTTFRMTGSTLKKNWNIWQIQDSS-----GKEQVGIKINGQTQSVVFSYKG  136 (245)
T ss_dssp             EEEEECSSCCCEEEHHHHCTTCCCSSEEEEEEEECCGGGGGCEEEEEEEECTT-----SCEEEEEEEEGGGTEEEEEEEB
T ss_pred             eeEEecCccccccchhHhccccCCCCEEEEEEEEcCCCCCCcceEEEEEECCC-----CcEEEEEEEcCCCCEEEEEecC
Confidence            35677766666654332211  135678888888 443333   477665432     3568888887  5678888865


Q ss_pred             C-CcEEEEEeCCc-eecCCCcEEEEEEEECCEEEEEEcCeeeecccCCCCccceecCCceEEcCcCCCCCCCCCccCCCc
Q psy9228         724 G-DGVVTIKFSKK-PVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPNMDLMTGGRYVHPM  801 (834)
Q Consensus       724 g-~~~~~l~~s~~-~~nDg~wH~V~i~r~~~~~~l~VD~~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~~~~~~~~~~~F  801 (834)
                      . ++...+..... ++.||+||+|.+...++.++|+||=..+...... ....++..+.++||-....       ....|
T Consensus       137 ~~g~~q~v~F~~~~~L~Dg~WHklalsV~~~~VtLyvDC~~~~~~~l~-~~~~i~~~G~~~lG~~~~~-------~~~~f  208 (245)
T 2uur_A          137 LDGSLQTAAFSNLSSLFDSQWHKIMIGVERSSATLFVDCNRIESLPIK-PRGPIDIDGFAVLGKLADN-------PQVSV  208 (245)
T ss_dssp             TTSCEEEEEECCCGGGCSSSCEEEEEEEETTEEEEEETTEEEEEEECC-CBCCCCCSSEEEEEEESSC-------TTCBC
T ss_pred             CCCCeeEEEecCCccccCCCEEEEEEEEECCEEEEEEecCcccccccC-CCCccccCCEEEEEEecCC-------CCCce
Confidence            4 34444554343 5999999999999999999999998877654332 2244667788999865221       12269


Q ss_pred             eEEEEEEEECC
Q psy9228         802 SGLMMNIHIQN  812 (834)
Q Consensus       802 ~GCi~~v~in~  812 (834)
                      .|=|+.|.|--
T Consensus       209 ~g~lQ~l~i~~  219 (245)
T 2uur_A          209 PFELQWMLIHC  219 (245)
T ss_dssp             CEEEEEEEEES
T ss_pred             EEEeEEEEEEc
Confidence            99999999944

>4dqa_A Uncharacterized protein; two domains structure, DUF 1735, laminin_G_3 concanavalin A- lectin/glucanases superfamily domain; HET: MSE; 1.50A {Bacteroides ovatus}

Probab=98.06  E-value=5.4e-05  Score=80.55  Aligned_cols=140  Identities=15%  Similarity=0.091  Sum_probs=91.5

Q ss_pred             eeeEEcCCceeeechhhhhhccCcceEEEEEEeCCC--CeeEEecCCCCCCCCCCcceEEEEE--------ECCEEEEEE
Q psy9228         652 SEVHFLGEGYVELKKELIEERRNEETIAFDFVTDDK--NALLLWNGQPSYKNGIGREFIAVAV--------VNGYLEYSY  721 (834)
Q Consensus       652 ~~~~F~g~s~~~~~~~~~~~~~~~~~i~~~frT~~~--~GlLl~~~~~~~~~~~~~~~~~l~l--------~~G~l~~~~  721 (834)
                      .++.|.+ +|+.++-.. ......++++++||...-  .-.||-..          ..+.|.+        ..++|++..
T Consensus       141 ~~~~~~~-~~~~~~~~~-~~~~~~~T~eawv~~~~~~~~~ti~g~e----------~~~~lr~gd~~~g~~~~~~Lq~~~  208 (355)
T 4dqa_A          141 KAGNFSN-HYISVKFPV-GTFFSSFTYEALINVDYFLDNNTIMGTE----------GVMILRIGDAGGGITPKDYLEVAG  208 (355)
T ss_dssp             EEEEEES-CCEEECCCT-TCCBSSEEEEEEEEESCCCSSEEEEEET----------TTEEEEEEEGGGTSEEEEEEEEEE
T ss_pred             ecceecC-CEEEcccCC-CCCCCcEEEEEEEECCcCCCcceEEeCC----------CeEEEEEecCCCCCCcCCeEEEec
Confidence            5678877 677765211 113478899999998653  34454311          2334555        345666642


Q ss_pred             EcCCcEEEEEeCCceecCCCcEEEEEEEE--CCEEEEEEcCeeeecccCCCCccceecCCceEEcCcCCCCCCCCCccCC
Q psy9228         722 DLGDGVVTIKFSKKPVNDGIKHSVNVTRI--NKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPNMDLMTGGRYVH  799 (834)
Q Consensus       722 ~~g~~~~~l~~s~~~~nDg~wH~V~i~r~--~~~~~l~VD~~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~~~~~~~~~~  799 (834)
                        + +  .+. +..++.+|+||||.+++.  ++.++|+|||..+...........+....+++||......     -...
T Consensus       209 --~-~--~~~-s~~~l~~g~W~HvA~t~d~~~~~~~lYvNG~~~~~~~~~~~~~~~~~~~~l~IG~~~~~~-----~~~~  277 (355)
T 4dqa_A          209 --G-Q--NYR-VTKPLLTNRWYHVALTYDQPTGKTGIYVNGEKWAGSDWGIDGFDPNSDMGFYIGRIYGFK-----WGER  277 (355)
T ss_dssp             --S-S--CEE-CSSCCCSSCEEEEEEEEETTTTEEEEEETTEEEEEEECCCCCBCTTSTTCEEESCCTTCT-----TCCC
T ss_pred             --C-C--ccc-cCCcccCCCEEEEEEEEECCCCEEEEEECCEEEEEEecCCCccccCCCceEEECCCCCCC-----CCCc
Confidence              2 2  244 667899999999999999  8899999999887654432222222223679999864320     0246


Q ss_pred             CceEEEEEEEECCce
Q psy9228         800 PMSGLMMNIHIQNKH  814 (834)
Q Consensus       800 ~F~GCi~~v~in~~~  814 (834)
                      .|.|-|.+|+|.+..
T Consensus       278 ~f~G~IdevrIw~~a  292 (355)
T 4dqa_A          278 PFHGKMSEVRVWSVA  292 (355)
T ss_dssp             CCEEEEEEEEEESSC
T ss_pred             ceeEEEEEEEEECCc
Confidence            799999999998864

>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}

Probab=98.06  E-value=1.6e-06  Score=98.34  Aligned_cols=71  Identities=21%  Similarity=0.447  Sum_probs=24.8

Q ss_pred             CCCCCCCCEeccCC--CCCceEeeCCCCCCCCCCCC----------CCCCccCCCCCC-CeeecCC--CCeEEeCCCCcc
Q psy9228         143 HNNCINNGLCQDAA--TRIGYTCICPPGFSGDRCSV----------LGEPCYPGACGD-GSCQDVD--GAMKCLCPIGTA  207 (834)
Q Consensus       143 ~~pC~n~g~C~~~~--~~~~~~C~C~~g~~G~~Ce~----------~~~~C~~~~C~~-g~C~~~~--~~~~C~C~~g~~  207 (834)
                      ..+|.++|+|.+..  ...++.|.|++||+|.+||+          +++.|.+.+|.+ |.|.+.-  ..+.|.|++||+
T Consensus       440 ~C~C~~~gtc~~~~~Cd~~tg~C~C~~g~~G~~Ce~C~~G~~g~~~~~~~C~~C~C~~~gs~~~~C~~~tG~C~C~~G~~  519 (525)
T 4aqs_A          440 SCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCDQCLPQHWGLSNDLDGCRPCDCDLGGALNNSCSEDSGQCSCLPHMI  519 (525)
T ss_dssp             ECCCCTTTBCCSSCCBCTTTCCBCBCTTCCSTTTCC--------------------------------------------
T ss_pred             cCCCCCCceecCCCcccCCCCEEECCCCCcCCCcccCCCCccCCCCCCCCCcCCCCCCCCccCCccCCCCCeeECCCCCc
Confidence            56677777776432  12467899999999999973          567899999986 6776542  345799999999


Q ss_pred             cCcccc
Q psy9228         208 GKRCEQ  213 (834)
Q Consensus       208 G~~Ce~  213 (834)
                      |++||+
T Consensus       520 G~~Ceq  525 (525)
T 4aqs_A          520 GRQCNE  525 (525)
T ss_dssp             ------
T ss_pred             CCCCCC
Confidence            999985

>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}

Probab=98.04  E-value=8.1e-07  Score=66.63  Aligned_cols=33  Identities=33%  Similarity=0.772  Sum_probs=26.2

Q ss_pred             CCCCCCCEeccCC--CCCceEeeCCCCCCCCCCCC
Q psy9228         144 NNCINNGLCQDAA--TRIGYTCICPPGFSGDRCSV  176 (834)
Q Consensus       144 ~pC~n~g~C~~~~--~~~~~~C~C~~g~~G~~Ce~  176 (834)
                      +||+|||+|....  ....|.|.|++||+|.+||.
T Consensus        14 ~pC~NGGtC~~~~~~~~~~~~C~C~~Gf~G~~Ce~   48 (58)
T 3ltf_D           14 WYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEY   48 (58)
T ss_dssp             HTSCSSCEEEEEEETTEEEEEEEECTTEESSSSCE
T ss_pred             CcCCCCCEEeCCccCCCCCEEeECCCCCccCCCcc
Confidence            4999999998321  23678999999999999975

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.98  E-value=2.6e-05  Score=92.29  Aligned_cols=72  Identities=26%  Similarity=0.813  Sum_probs=59.1

Q ss_pred             CCCCCCCCCCCC-----eecccCCCCCceeeecCCCCC---CCCCccCccCCCCCCccCCCceeeecCCCcEEcCCCCCC
Q psy9228         569 PVCAPKPCQNYG-----ICYPTDTSERGYNCSCLTGYS---GDHCEKENNMCMKGDVCKNGGMCKVTPDSYECLCSLGYA  640 (834)
Q Consensus       569 ~~C~~~pC~ngg-----~C~~~~~~~~~~~C~C~~G~~---G~~Ce~~~~~C~~~~pC~ngg~C~~~~~~~~C~C~~g~~  640 (834)
                      ..|..++|.+++     .|.+...   +|.|.|++||.   |+.|+ ++++|....+|  ..+|++..++|+|.|++||.
T Consensus       308 ~~C~~~~C~~~~~~C~~~C~~~~~---~y~C~C~~Gy~l~~g~~C~-dideC~~~~~C--~~~C~n~~gsy~C~C~~Gy~  381 (791)
T 3m0c_C          308 KECGTNECLDNNGGCSHVCNDLKI---GYECLCPDGFQLVAQRRCE-DIDECQDPDTC--SQLCVNLEGGYKCQCEEGFQ  381 (791)
T ss_dssp             TTBSCCSTTTGGGGCSSEEEECSB---SEEEECCTTCEEETTTEEE-CCCCCSSSSSC--TTTCCBCSSCBCCCCCSSEE
T ss_pred             cccccccccccccCccccccCCCC---CcccCCCCCCccCCCCccc-cCcccCCCCCC--CCeeecCCCCceeecCCCCE
Confidence            458888888754     8999887   99999999995   89998 67999843366  46999999999999999995


Q ss_pred             ----CCCccc
Q psy9228         641 ----PPNCAK  646 (834)
Q Consensus       641 ----G~~Ce~  646 (834)
                          +..|..
T Consensus       382 l~~~~~~C~~  391 (791)
T 3m0c_C          382 LDPHTKACKA  391 (791)
T ss_dssp             CCSSCCCCEE
T ss_pred             eCCCCceeee
Confidence                466754

>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}

Probab=97.95  E-value=1.8e-06  Score=64.71  Aligned_cols=31  Identities=32%  Similarity=0.844  Sum_probs=26.7

Q ss_pred             CCCCCCeecc----cCCCCCceeeecCCCCCCCCCccC
Q psy9228         575 PCQNYGICYP----TDTSERGYNCSCLTGYSGDHCEKE  608 (834)
Q Consensus       575 pC~ngg~C~~----~~~~~~~~~C~C~~G~~G~~Ce~~  608 (834)
                      ||+|||+|..    ..+   .|.|.|++||+|++||..
T Consensus        15 pC~NGGtC~~~~~~~~~---~~~C~C~~Gf~G~~Ce~~   49 (58)
T 3ltf_D           15 YCLNDAHCFAVKIADLP---VYSCECAIGFMGQRCEYK   49 (58)
T ss_dssp             TSCSSCEEEEEEETTEE---EEEEEECTTEESSSSCEE
T ss_pred             cCCCCCEEeCCccCCCC---CEEeECCCCCccCCCccc
Confidence            9999999983    333   799999999999999965

>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A

Probab=97.90  E-value=2.5e-06  Score=83.42  Aligned_cols=66  Identities=27%  Similarity=0.632  Sum_probs=55.4

Q ss_pred             CCCCCCCCCCeecccCCCCCceeeecCCC------CCCCCCccCccCCCCC--CccCCC--ceeeecCCCcEEcCCCCCC
Q psy9228         571 CAPKPCQNYGICYPTDTSERGYNCSCLTG------YSGDHCEKENNMCMKG--DVCKNG--GMCKVTPDSYECLCSLGYA  640 (834)
Q Consensus       571 C~~~pC~ngg~C~~~~~~~~~~~C~C~~G------~~G~~Ce~~~~~C~~~--~pC~ng--g~C~~~~~~~~C~C~~g~~  640 (834)
                      +.+.||.++|+|..       .+|.|.+|      |+|..||.+++.|...  .+|.++  |+|..    .+|.|.+||+
T Consensus       140 ~~~~~Csg~G~C~~-------g~C~C~~gw~~~~~~~G~~Ce~~~~~C~~~~g~~C~~~~~G~C~~----g~C~C~~G~~  208 (217)
T 2p28_B          140 NNSIICSGLGDCVC-------GQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFC----GKCRCHPGFE  208 (217)
T ss_dssp             TTSCBGGGTEEEET-------TEEEECCCCSTTCCEESTTSCEESSCSCEETTEETTCTTTEEEET----TEEEECTTEE
T ss_pred             CCCCCCCCCCEEeC-------CceECCCCCCCcccEECCCcccCCccCCCCCCCCCCCCCCcEEeC----CeeECCCCCc
Confidence            45689999999983       37999999      6999999877888643  379988  99985    4999999999


Q ss_pred             CCCcccc
Q psy9228         641 PPNCAKR  647 (834)
Q Consensus       641 G~~Ce~~  647 (834)
                      |..|+.+
T Consensus       209 G~~C~~~  215 (217)
T 2p28_B          209 GSACQHH  215 (217)
T ss_dssp             STTSCEE
T ss_pred             cCCcCCC
Confidence            9999864

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.84  E-value=1.2e-05  Score=94.54  Aligned_cols=67  Identities=39%  Similarity=0.998  Sum_probs=55.6

Q ss_pred             CCCCCCC-----CEeccCCCCCceEeeCCCCCC---CCCCCCCCCCcc-CCCCCCCeeecCCCCeEEeCCCCccc----C
Q psy9228         143 HNNCINN-----GLCQDAATRIGYTCICPPGFS---GDRCSVLGEPCY-PGACGDGSCQDVDGAMKCLCPIGTAG----K  209 (834)
Q Consensus       143 ~~pC~n~-----g~C~~~~~~~~~~C~C~~g~~---G~~Ce~~~~~C~-~~~C~~g~C~~~~~~~~C~C~~g~~G----~  209 (834)
                      .++|.++     .+|.+.+  ++|+|.|++||.   |..|+ ++|||. +.+|. .+|++..++|.|.|++||++    .
T Consensus       294 ~~eC~~~~~~C~~~C~~~~--~~~~C~C~~G~~~~~~~~C~-dideC~~~~~C~-~~C~n~~g~y~C~C~~G~~~~~~~~  369 (699)
T 1n7d_A          294 TNECLDNNGGCSHVCNDLK--IGYECLCPDGFQLVAQRRCE-DIDECQDPDTCS-QLCVNLEGGYKCQCEEGFQLDPHTK  369 (699)
T ss_dssp             CCCTTSSTTTSCTTCCCCT--TCCCCCCCSSSCCCSSSCCC-CCCCCSSSSSCT-TTCCBCSSCBCCCCCSSCBCCSSCC
T ss_pred             cccccccccCcCCCcccCC--CCcEEeCCCCeEcCCCCccc-CccccCCCCccc-cccccCCCCeeeeeecccccCCCCC
Confidence            5566543     4788876  899999999998   88997 899998 57896 48999999999999999985    5


Q ss_pred             cccc
Q psy9228         210 RCEQ  213 (834)
Q Consensus       210 ~Ce~  213 (834)
                      .|..
T Consensus       370 ~C~~  373 (699)
T 1n7d_A          370 ACKA  373 (699)
T ss_dssp             CCBC
T ss_pred             cccc
Confidence            6754

>2i9a_A Urokinase-type plasminogen activator; growth factor-like domain, kringle domain, hydrolase; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 2i9b_A*

Probab=97.82  E-value=8.5e-06  Score=74.08  Aligned_cols=63  Identities=22%  Similarity=0.507  Sum_probs=48.1

Q ss_pred             CCCCCCCCEeccCCCCCce-EeeCCCCCCCCCCCCCCCCccCCCCCCCeeecC-CCCeEEeCCCCcccCccccc
Q psy9228         143 HNNCINNGLCQDAATRIGY-TCICPPGFSGDRCSVLGEPCYPGACGDGSCQDV-DGAMKCLCPIGTAGKRCEQK  214 (834)
Q Consensus       143 ~~pC~n~g~C~~~~~~~~~-~C~C~~g~~G~~Ce~~~~~C~~~~C~~g~C~~~-~~~~~C~C~~g~~G~~Ce~~  214 (834)
                      .-||+|||+|........| .|.|++||.|++||.+.++    +     |... ...|+.......+|..|+.-
T Consensus        12 ~cpC~NGGtC~~~~~~s~~~~C~Cp~g~~G~~Cei~~~~----~-----C~~g~G~~YrG~~s~T~sG~~Cq~W   76 (145)
T 2i9a_A           12 NCDCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDKSK----T-----CYEGNGHFYRGKASTDTMGRPCLPW   76 (145)
T ss_dssp             CCCCCTTCEEEECSSSTTCEEEECCTTEESTTSCEESSC----C-----EECTTCTTCCSCCCBBTTSCBCCCT
T ss_pred             CCCCCCCCCcCCCccccCCccccCCCCCCCCceeccccc----c-----CCCCCccccccceecCCcCCcccCC
Confidence            4489999999875323567 8999999999999987653    2     3332 34688888888999999864

>3flp_A SAP-like pentraxin; physiological doubly-stacked heptamer, pentraxin fold, cyclic heptamer, invertebrate lectin, sugar binding protein; 2.30A {Limulus polyphemus} PDB: 3flr_A 3flt_A

Probab=97.81  E-value=0.00053  Score=67.52  Aligned_cols=150  Identities=13%  Similarity=0.107  Sum_probs=92.7

Q ss_pred             ccccccCC--ccccceeEEEEEEEeeCC-CCeeEEEeccCCccccCCCCCeEEEEEE-CcE----EEEEEeccc-EEEEe
Q psy9228         392 LSYLALPT--LTDAHLHFSIELSFKPTD-YNGLIMYTGDSNMKSYKGKGDFVSFGLE-DGY----PVFRFDVGL-VVLRS  462 (834)
Q Consensus       392 ~s~l~~~~--~~~~~~~~~i~~~frt~~-~~GlLl~~~~~~~~~~~~~~d~~~l~L~-~G~----l~~~~~~G~-~~i~s  462 (834)
                      .+|+.+++  ....-..|++.+++|+.. ..+.||..+..      ...+-+.|... ++.    +.+.+.-+. ..+..
T Consensus        17 ~~yv~l~~~~~~p~l~~fTvc~wv~~~~~~~~~lfSy~~~------~~~n~l~l~~~~~~~g~~~~~l~i~g~~~~~~~~   90 (217)
T 3flp_A           17 PKFPHLRFMQTLPAVRQLTVCQRIKPFHRNTGYIFSCATS------NQDNQFITSMYVKSDGTLNLGLQVNASSNKYISC   90 (217)
T ss_dssp             TBCCEEEESSCBCCBSEEEEEEEEEESCSSCEEEEEEEET------TEEEEEEEEEEECTTSEEEEEEEETTCCCEEEEE
T ss_pred             CCEEEEecCCCCCCCccEEEEEEEEecCCCCeeEEEEECC------CCCceEEEEEeCCCCcceEEEEEECCccceeEEc
Confidence            57777754  223356799999999554 45666643321      12344555554 333    444443222 34556


Q ss_pred             eeeecCCCeEEEEEEEEC--CeEEEEECCeeeeeeecCCCccccccCCCceeeccccCCCcccCcCcccccCceeEEeee
Q psy9228         463 KVTLVPHEWVVVTIIKDF--KEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTI  540 (834)
Q Consensus       463 ~~~~~dg~wH~V~v~~~~--~~~~l~VD~~~~~~~~~~g~~~~~l~~~~~l~iGG~~~~~~~~~~~~~~~~gF~GCi~~v  540 (834)
                      +..+.+|+||+|.++++.  ..++|+|||........... ...+...+.+.||.-....   .........|.|-|.++
T Consensus        91 ~~~~~~g~W~Hv~~t~d~~~G~~~lYvdG~~~~~~~~~~~-g~~i~~~g~l~lG~~~~~~---gg~f~~~~~f~G~i~~v  166 (217)
T 3flp_A           91 PIEIELGQWYHVCHVWSGVDGRMAVYANGSPCGTMENVGK-GHQISAGGTVVIGQEQDKI---GGGFEEQESWSGELSDL  166 (217)
T ss_dssp             EEECCTTSCEEEEEEEETTTTEEEEEETTEEEEEESCSST-TCCBCSCBEEEESSCCSBT---TBCCCGGGCCCEEEEEE
T ss_pred             ccccCCCCEEEEEEEEECCCCEEEEEECCEEecceecccc-CcEECCCCEEEeCCcccCC---CCccCCCCceEEEEeeE
Confidence            678999999999999997  47899999988765332211 1234456678888644310   11122346899999999


Q ss_pred             EEcCeeeeecc
Q psy9228         541 DVLGSELDLIN  551 (834)
Q Consensus       541 ~ing~~~~~~~  551 (834)
                      +|-.+.+...+
T Consensus       167 ~iw~~aLs~~e  177 (217)
T 3flp_A          167 QVWDEALTTHQ  177 (217)
T ss_dssp             EEESSCCCHHH
T ss_pred             EEECccCCHHH
Confidence            99877665543

>2i9a_A Urokinase-type plasminogen activator; growth factor-like domain, kringle domain, hydrolase; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 2i9b_A*

Probab=97.79  E-value=1.3e-05  Score=72.92  Aligned_cols=61  Identities=25%  Similarity=0.521  Sum_probs=46.6

Q ss_pred             CCCCCCeecccCCCCCce-eeecCCCCCCCCCccCccCCCCCCccCCCceeeecCCCcEEcCCCCCCCCCccc
Q psy9228         575 PCQNYGICYPTDTSERGY-NCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDSYECLCSLGYAPPNCAK  646 (834)
Q Consensus       575 pC~ngg~C~~~~~~~~~~-~C~C~~G~~G~~Ce~~~~~C~~~~pC~ngg~C~~~~~~~~C~C~~g~~G~~Ce~  646 (834)
                      ||+|||+|.+..- ...| .|.|++||.|++||++.++     +|.++     ....|++.+....+|..|+.
T Consensus        14 pC~NGGtC~~~~~-~s~~~~C~Cp~g~~G~~Cei~~~~-----~C~~g-----~G~~YrG~~s~T~sG~~Cq~   75 (145)
T 2i9a_A           14 DCLNGGTCVSNKY-FSNIHWCNCPKKFGGQHCEIDKSK-----TCYEG-----NGHFYRGKASTDTMGRPCLP   75 (145)
T ss_dssp             CCCTTCEEEECSS-STTCEEEECCTTEESTTSCEESSC-----CEECT-----TCTTCCSCCCBBTTSCBCCC
T ss_pred             CCCCCCCcCCCcc-ccCCccccCCCCCCCCceeccccc-----cCCCC-----CccccccceecCCcCCcccC
Confidence            9999999987621 0266 8999999999999988642     44432     23578888888899999974

>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A

Probab=97.71  E-value=9.7e-06  Score=76.38  Aligned_cols=42  Identities=31%  Similarity=0.751  Sum_probs=27.8

Q ss_pred             CccCCCCCCCCCCCCEeccCCCCCceEeeCCCCCCCCCCCCCCCCccC
Q psy9228         136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEPCYP  183 (834)
Q Consensus       136 ~~C~~~~~~pC~n~g~C~~~~~~~~~~C~C~~g~~G~~Ce~~~~~C~~  183 (834)
                      ++|.   ++||+++|+|.+..  ++|+|.|++||+|.+||... +|.+
T Consensus       120 ~~c~---~~~C~~~g~C~~~~--~~~~c~C~~g~~G~~Ce~~~-~c~~  161 (162)
T 1g1s_A          120 ASCQ---DMSCSKQGECLETI--GNYTCSCYPGFYGPECEYVR-DDDD  161 (162)
T ss_dssp             CCCC---TTGGGGSEEEEECS--SSEEEEECTTEESTTSCEEC-C---
T ss_pred             CCCc---CCCCCCCCEEecCC--CCceEeCCCCCcCcccccCc-ccCC
Confidence            3566   77777777777765  67777777777777776553 6654

>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A

Probab=97.70  E-value=2.2e-05  Score=56.13  Aligned_cols=33  Identities=24%  Similarity=0.680  Sum_probs=26.8

Q ss_pred             CCCCCCCCEeccCCCCCceEeeCCCCCCCCCCCC
Q psy9228         143 HNNCINNGLCQDAATRIGYTCICPPGFSGDRCSV  176 (834)
Q Consensus       143 ~~pC~n~g~C~~~~~~~~~~C~C~~g~~G~~Ce~  176 (834)
                      .++|.|| +|.-....+.+.|.|++||+|.+||.
T Consensus        13 ~~yC~nG-~C~~~~~~~~~~C~C~~gy~G~RCe~   45 (50)
T 3e50_C           13 TQFCFHG-TCRFLVQEDKPACVCHSGYVGARCEH   45 (50)
T ss_pred             cCcccCC-EEeeccCCCCeEEECCCCCcccCCCc
Confidence            6889997 99854444678999999999999975

>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...

Probab=97.66  E-value=1.1e-05  Score=90.45  Aligned_cols=39  Identities=41%  Similarity=0.897  Sum_probs=35.8

Q ss_pred             CCCCCCCCCCCCCeecc-cCCCCCceeeecC-CCCCCCCCccCc
Q psy9228         568 SPVCAPKPCQNYGICYP-TDTSERGYNCSCL-TGYSGDHCEKEN  609 (834)
Q Consensus       568 ~~~C~~~pC~ngg~C~~-~~~~~~~~~C~C~-~G~~G~~Ce~~~  609 (834)
                      .++|.++||+|||+|.+ .++   +|+|.|+ +||+|++||...
T Consensus         2 ~d~C~~~PC~ngG~C~~~~~~---~y~C~C~~~G~~G~~Ce~~~   42 (553)
T 1q4g_A            2 VNPCCYYPCQHQGICVRFGLD---RYQCDCTRTGYSGPNCTIPE   42 (553)
T ss_dssp             CCGGGGCCCCTTCEEEEETTT---EEEEECTTSSEETTTTCEEC
T ss_pred             CCcCCCCCCCCCCCcCCCCCC---ceEeeCCCCCcCCCCCCCCc
Confidence            37899999999999999 777   9999999 999999999864

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=97.63  E-value=1.7e-05  Score=84.50  Aligned_cols=28  Identities=14%  Similarity=0.140  Sum_probs=22.6

Q ss_pred             CceeEEEcCCcceeeeeCCcccCCCcce
Q psy9228          56 VERMMFVDGIGPFSGESQGAFQGLDLSE   83 (834)
Q Consensus        56 ~~g~~cvd~~~~~~~~~~~~~~g~~~~~   83 (834)
                      ..+..|....+.+.|.|+.+++|.+|+.
T Consensus       301 GHas~C~~~~g~~~C~C~~~ttG~~CE~  328 (426)
T 3zyj_B          301 LHATVCVYDNSKLTCECEHNTTGPDCGK  328 (426)
T ss_dssp             SSCSCEEEETTEEEECCCTTEESSSSCE
T ss_pred             CchhhcCCCCCCceeeCCCCCcCCCccc
Confidence            3445787766779999999999999985

>3kqr_A Serum amyloid P-component; glycoprotein, disulfide bond, lectin, metal-binding secreted; HET: NAG; 1.50A {Homo sapiens} SCOP: b.29.1.5 PDB: 1lgn_A* 1gyk_A 2a3w_A* 2a3x_A* 2a3y_A* 1sac_A* 3d5o_A* 2w08_A*

Probab=97.63  E-value=0.0017  Score=63.06  Aligned_cols=147  Identities=14%  Similarity=0.048  Sum_probs=91.1

Q ss_pred             ccccccCCc-cccceeEEEEEEEeeCC-CCeeEEEeccCCccccCCCCCeEEEEE-ECcEEEEEEecccEEEEeeeeecC
Q psy9228         392 LSYLALPTL-TDAHLHFSIELSFKPTD-YNGLIMYTGDSNMKSYKGKGDFVSFGL-EDGYPVFRFDVGLVVLRSKVTLVP  468 (834)
Q Consensus       392 ~s~l~~~~~-~~~~~~~~i~~~frt~~-~~GlLl~~~~~~~~~~~~~~d~~~l~L-~~G~l~~~~~~G~~~i~s~~~~~d  468 (834)
                      .+|+.+.+. ...-..|++.+++++.. ..+.||..+..      ....-+.|.. ..+.+.+.++ | .......++.+
T Consensus        17 ~~yv~l~~~~~~~l~~fTvc~wv~~~~~~~~tlfSy~~~------~~~nel~l~~~~~~~~~l~i~-g-~~~~~~~~~~~   88 (204)
T 3kqr_A           17 TDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQ------GRDNELLVYKERVGEYSLYIG-R-HKVTSKVIEKF   88 (204)
T ss_dssp             SCEEEEECCCCSCBSEEEEEEEEECCCCSCEEEEEEEET------TEEEEEEEEEEETTEEEEEET-T-EEEEEECCCCS
T ss_pred             CCEEEEeCCCCCCcCCEEEEEEEEeCCCCCeEEEEEECC------CCCceEEEEEcCCCeEEEEEC-C-eEEEEecccCC
Confidence            578777543 33356799999999876 45666644332      1222333433 4566666553 2 22233367899


Q ss_pred             CCeEEEEEEEECC--eEEEEECCeeeeeeecCCCccccccCCCceeeccccCCCcccCcCcccccCceeEEeeeEEcCee
Q psy9228         469 HEWVVVTIIKDFK--EGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSE  546 (834)
Q Consensus       469 g~wH~V~v~~~~~--~~~l~VD~~~~~~~~~~g~~~~~l~~~~~l~iGG~~~~~~~~~~~~~~~~gF~GCi~~v~ing~~  546 (834)
                      |+||+|.++++..  .++|+|||........ .. ...+...+.+.||.-.+..   .........|.|-|.++.+=.+.
T Consensus        89 g~W~Hv~~twd~~~G~~~lyvdG~~~~~~~~-~~-g~~i~~~g~l~lGq~qd~~---gg~f~~~~~f~G~i~~v~iW~~a  163 (204)
T 3kqr_A           89 PAPVHICVSWESSSGIAEFWINGTPLVKKGL-RQ-GYFVEAQPKIVLGQEQDSY---GGKFDRSQSFVGEIGDLYMWDSV  163 (204)
T ss_dssp             SCCEEEEEEEETTTCEEEEEETTEECCCEEC-CT-TCCBCSSCEEEESSCCSSS---SCCCCGGGCCCEEEEEEEEESSC
T ss_pred             CceEEEEEEEECCCCeEEEEECCEEeeeecc-CC-CCEECCCcEEEEcccccCC---CCCcCcccceeEEEeeEEEECcc
Confidence            9999999999864  7889999987654221 11 1234556678888654321   11223356899999999998776


Q ss_pred             eeecc
Q psy9228         547 LDLIN  551 (834)
Q Consensus       547 ~~~~~  551 (834)
                      +...+
T Consensus       164 Ls~~e  168 (204)
T 3kqr_A          164 LPPEN  168 (204)
T ss_dssp             CCHHH
T ss_pred             CCHHH
Confidence            65543

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.62  E-value=3.3e-05  Score=90.82  Aligned_cols=71  Identities=27%  Similarity=0.806  Sum_probs=57.7

Q ss_pred             CCCCCCCCCC-----CeecccCCCCCceeeecCCCCC---CCCCccCccCCCCCCccCCCceeeecCCCcEEcCCCCCCC
Q psy9228         570 VCAPKPCQNY-----GICYPTDTSERGYNCSCLTGYS---GDHCEKENNMCMKGDVCKNGGMCKVTPDSYECLCSLGYAP  641 (834)
Q Consensus       570 ~C~~~pC~ng-----g~C~~~~~~~~~~~C~C~~G~~---G~~Ce~~~~~C~~~~pC~ngg~C~~~~~~~~C~C~~g~~G  641 (834)
                      .|..++|.++     .+|.+...   +|+|.|++||+   |+.|+ ++++|....||.  .+|++..++|+|.|++||.+
T Consensus       291 ~C~~~eC~~~~~~C~~~C~~~~~---~~~C~C~~G~~~~~~~~C~-dideC~~~~~C~--~~C~n~~g~y~C~C~~G~~~  364 (699)
T 1n7d_A          291 ECGTNECLDNNGGCSHVCNDLKI---GYECLCPDGFQLVAQRRCE-DIDECQDPDTCS--QLCVNLEGGYKCQCEEGFQL  364 (699)
T ss_dssp             SCCCCCTTSSTTTSCTTCCCCTT---CCCCCCCSSSCCCSSSCCC-CCCCCSSSSSCT--TTCCBCSSCBCCCCCSSCBC
T ss_pred             ccccccccccccCcCCCcccCCC---CcEEeCCCCeEcCCCCccc-CccccCCCCccc--cccccCCCCeeeeeeccccc
Confidence            4666666643     47888776   99999999999   88999 789998545896  48999999999999999985


Q ss_pred             ----CCccc
Q psy9228         642 ----PNCAK  646 (834)
Q Consensus       642 ----~~Ce~  646 (834)
                          ..|..
T Consensus       365 ~~~~~~C~~  373 (699)
T 1n7d_A          365 DPHTKACKA  373 (699)
T ss_dssp             CSSCCCCBC
T ss_pred             CCCCCcccc
Confidence                55753

>3pvn_A C-reactive protein; pentraxin family, immune system; 1.98A {Homo sapiens} SCOP: b.29.1.5 PDB: 1gnh_A 1lj7_A 3l2y_A 1b09_A 3pvo_A

Probab=97.61  E-value=0.0021  Score=62.64  Aligned_cols=147  Identities=16%  Similarity=0.070  Sum_probs=92.0

Q ss_pred             ccccccCCc-cccceeEEEEEEEeeCC---CCeeEEEeccCCccccCCCCCeEEEEEE-CcEEEEEEecccEEEEeeeee
Q psy9228         392 LSYLALPTL-TDAHLHFSIELSFKPTD---YNGLIMYTGDSNMKSYKGKGDFVSFGLE-DGYPVFRFDVGLVVLRSKVTL  466 (834)
Q Consensus       392 ~s~l~~~~~-~~~~~~~~i~~~frt~~---~~GlLl~~~~~~~~~~~~~~d~~~l~L~-~G~l~~~~~~G~~~i~s~~~~  466 (834)
                      .+|+.+.+. ...-..|++.+++++..   .++.||.....      ....-+.|... +|.+.+.++ | .......++
T Consensus        17 ~~yv~l~~~~~~~l~~fTvc~wv~~~~~~~~~~~lfSy~~~------~~~n~l~l~~~~~g~~~l~i~-g-~~~~~~~~~   88 (206)
T 3pvn_A           17 TSYVSLKAPLTKPLKAFTVCLHFYTELSSTRGYSIFSYATK------RQDNEILIFWSKDIGYSFTVG-G-SEILFEVPE   88 (206)
T ss_dssp             SCEEEECCCCCSCBSEEEEEEEEEESGGGTCCEEEEEEEET------TEEEEEEEEEETTTEEEEEET-T-EEEEEECSS
T ss_pred             CCEEEEecCCCCCcCCEEEEEEEEecCCCCCcEEEEEEEcC------CCCCEEEEEEcCCCeEEEEEC-C-eEEEEeccC
Confidence            578877643 33356799999999886   46666644332      12234444443 466666553 2 222333678


Q ss_pred             cCCCeEEEEEEEECC--eEEEEECCeeeeeeecCCCccccccCCCceeeccccCCCcccCcCcccccCceeEEeeeEEcC
Q psy9228         467 VPHEWVVVTIIKDFK--EGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLG  544 (834)
Q Consensus       467 ~dg~wH~V~v~~~~~--~~~l~VD~~~~~~~~~~g~~~~~l~~~~~l~iGG~~~~~~~~~~~~~~~~gF~GCi~~v~ing  544 (834)
                      .+|+||+|.++++..  .++|+|||........ .. ...+...+.+.||.-...   ..........|.|-|.++++-.
T Consensus        89 ~~g~W~Hv~~twd~~~G~~~lyvdG~~~~~~~~-~~-g~~i~~~g~l~lGq~qd~---~gg~f~~~~~f~G~i~~v~iw~  163 (206)
T 3pvn_A           89 VTVAPVHICTSWESASGIVEFWVDGKPRVRKSL-KK-GYTVGAEASIILGQEQDS---FGGNFEGSQSLVGDIGNVNMWD  163 (206)
T ss_dssp             CCSSCEEEEEEEETTTCEEEEEETTEECCCEEC-CT-TCCBCSSCEEEESSCCSB---TTBCCCGGGCCCEEEEEEEEES
T ss_pred             CCCceEEEEEEEECCCCeEEEEECCEEcccccc-cC-CcEECCCCEEEEcccccc---CCCCcCCccceEEEEeeEEEEC
Confidence            999999999999864  7899999987653221 11 123455667888754321   1111233468999999999987


Q ss_pred             eeeeecc
Q psy9228         545 SELDLIN  551 (834)
Q Consensus       545 ~~~~~~~  551 (834)
                      +.+...+
T Consensus       164 ~aLs~~e  170 (206)
T 3pvn_A          164 FVLSPDE  170 (206)
T ss_dssp             SCCCHHH
T ss_pred             ccCCHHH
Confidence            7665543

>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...

Probab=97.61  E-value=1.7e-05  Score=88.97  Aligned_cols=38  Identities=32%  Similarity=0.820  Sum_probs=33.6

Q ss_pred             CccCCCCCCCCCCCCEecc-CCCCCceEeeCC-CCCCCCCCCCCC
Q psy9228         136 NTCKSSKHNNCINNGLCQD-AATRIGYTCICP-PGFSGDRCSVLG  178 (834)
Q Consensus       136 ~~C~~~~~~pC~n~g~C~~-~~~~~~~~C~C~-~g~~G~~Ce~~~  178 (834)
                      |+|.   ++||+|||+|.+ ..  ++|+|.|+ +||+|.+||...
T Consensus         3 d~C~---~~PC~ngG~C~~~~~--~~y~C~C~~~G~~G~~Ce~~~   42 (553)
T 1q4g_A            3 NPCC---YYPCQHQGICVRFGL--DRYQCDCTRTGYSGPNCTIPE   42 (553)
T ss_dssp             CGGG---GCCCCTTCEEEEETT--TEEEEECTTSSEETTTTCEEC
T ss_pred             CcCC---CCCCCCCCCcCCCCC--CceEeeCCCCCcCCCCCCCCc
Confidence            5798   999999999998 65  88999999 999999998754

>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A

Probab=97.58  E-value=2e-05  Score=74.22  Aligned_cols=41  Identities=32%  Similarity=0.687  Sum_probs=36.2

Q ss_pred             CCCCCCCCCCCCeecccCCCCCceeeecCCCCCCCCCccCccCCC
Q psy9228         569 PVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCM  613 (834)
Q Consensus       569 ~~C~~~pC~ngg~C~~~~~~~~~~~C~C~~G~~G~~Ce~~~~~C~  613 (834)
                      ++|.++||+|+|+|.+..+   +|+|.|++||+|..||..+ +|.
T Consensus       120 ~~c~~~~C~~~g~C~~~~~---~~~c~C~~g~~G~~Ce~~~-~c~  160 (162)
T 1g1s_A          120 ASCQDMSCSKQGECLETIG---NYTCSCYPGFYGPECEYVR-DDD  160 (162)
T ss_dssp             CCCCTTGGGGSEEEEECSS---SEEEEECTTEESTTSCEEC-C--
T ss_pred             CCCcCCCCCCCCEEecCCC---CceEeCCCCCcCcccccCc-ccC
Confidence            5789999999999999998   9999999999999999884 775

>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A

Probab=97.56  E-value=2.5e-05  Score=73.02  Aligned_cols=52  Identities=27%  Similarity=0.626  Sum_probs=37.0

Q ss_pred             ceEee-CCCCCCCCCCCC-------------CCCCccCCCCCC-C------eeecCCCCeEEeCCCCcccCcccc
Q psy9228         160 GYTCI-CPPGFSGDRCSV-------------LGEPCYPGACGD-G------SCQDVDGAMKCLCPIGTAGKRCEQ  213 (834)
Q Consensus       160 ~~~C~-C~~g~~G~~Ce~-------------~~~~C~~~~C~~-g------~C~~~~~~~~C~C~~g~~G~~Ce~  213 (834)
                      +..|. |+++|+|.+||+             ..+.|.+-+|.+ |      +|..  ....|.|.+||+|++|+.
T Consensus        74 tG~C~~C~~g~~G~~Ce~C~~Gy~g~~~~~~~~~~C~~C~C~~~Gs~~~~~~Cd~--~tG~C~C~~g~~G~~Cd~  146 (162)
T 1klo_A           74 TGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNP--VTGQCQCLPHVSGRDCGT  146 (162)
T ss_dssp             TCCBCCBCTTEETTTTCEECTTEEECTTCSSGGGSEEECCCCTTTBGGGCCCCCT--TTCCCCBCTTEESTTCCE
T ss_pred             CCcccCCCCCCcCCCcCcCchhhcCCccccCCCCCCeeccCCCCCccCCCCCCCC--CCCEeECCCCCcCCCCCC
Confidence            45784 888888888874             123455556664 4      5654  345899999999999986

>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...

Probab=97.53  E-value=3.1e-05  Score=86.87  Aligned_cols=37  Identities=38%  Similarity=0.971  Sum_probs=33.6

Q ss_pred             CCCCCCCCCCCCeecc-cCCCCCceeeecC-CCCCCCCCccC
Q psy9228         569 PVCAPKPCQNYGICYP-TDTSERGYNCSCL-TGYSGDHCEKE  608 (834)
Q Consensus       569 ~~C~~~pC~ngg~C~~-~~~~~~~~~C~C~-~G~~G~~Ce~~  608 (834)
                      ++|.++||+|||+|.+ .++   +|+|.|+ +||+|++||..
T Consensus         2 d~C~s~PC~ngG~C~~~~~~---~y~C~C~~~G~~G~~Ce~~   40 (587)
T 3nt1_A            2 NPCCSNPCQNRGECMSTGFD---QYKCDCTRTGFYGENCTTP   40 (587)
T ss_dssp             CTTTTCCCCTTCEEEEEETT---EEEEECTTSSEETTTTCEE
T ss_pred             CCCCCCCCCCCCEeeCCCCC---CeEEecCCCCccCCCCCCc
Confidence            6899999999999996 445   9999999 99999999985

>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex (toxin-growth factor), diphtheria toxin, receptor, H binding epidermal growth factor; 2.65A {Homo sapiens} SCOP: g.3.11.1

Probab=97.50  E-value=2.7e-05  Score=61.09  Aligned_cols=40  Identities=30%  Similarity=0.788  Sum_probs=29.3

Q ss_pred             CccCCCCCCCCCCCCEeccCCCCCceEeeCCCCCCCCCCCC
Q psy9228         136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSV  176 (834)
Q Consensus       136 ~~C~~~~~~pC~n~g~C~~~~~~~~~~C~C~~g~~G~~Ce~  176 (834)
                      ++|.....++|.|| +|.-....+.+.|.|++||+|.+||.
T Consensus        38 ~pC~~~~~~yClnG-~C~~i~~~~~~~C~C~~GYtG~RCE~   77 (79)
T 1xdt_R           38 DPCLRKYKDFCIHG-ECKYVKELRAPSCICHPGYHGERCHG   77 (79)
T ss_dssp             -CTTTTTTTCCSSE-EECCBGGGTBCCEEECTTEESTTCCE
T ss_pred             CCCCccccCcCCCC-EeeeecCCCCeEEEcCCCcccccccc
Confidence            45654446899997 99643333678999999999999975

>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell receptor, signalling, immune SY; 4.10A {Cricetulus migratorius}

Probab=97.50  E-value=3.9e-05  Score=62.18  Aligned_cols=37  Identities=27%  Similarity=0.594  Sum_probs=31.3

Q ss_pred             cEEEEecCC-CCCccccCCCeEEEccc-CCCCCeeEEEEEcC
Q psy9228           3 YIKWSRADG-LPLQRYAEGNVLRITNA-RLQDSGKYKCEIQG   42 (834)
Q Consensus         3 ~~~w~~~~~-~~~~~~~~~~~l~~~~~-~~~d~g~y~c~~~~   42 (834)
                      .|+|.|.+. ||..   .++.|+|.+| +.+|+|.|+|.+..
T Consensus        28 ~i~W~kdg~~l~~~---~~~~L~I~~v~~~~DsG~Y~C~A~t   66 (82)
T 3r08_E           28 NLKWEKNGQELPQK---HDKHLVLQDFSEVEDSGYYVCYTPA   66 (82)
T ss_dssp             SCEEEETTEECTTC---CSSCCBCCSCCTTTTCSCEEEECSS
T ss_pred             cEEEEECCEECcCC---CCCEEEECccCccCcCEEEEEEEcc
Confidence            489999666 8765   5679999997 78999999999964

>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A

Probab=97.47  E-value=4.8e-05  Score=71.10  Aligned_cols=67  Identities=33%  Similarity=0.766  Sum_probs=49.0

Q ss_pred             CCCCCCEeccCCCCCceEe-eCCCCCCCCCCCC--------C------CCCccCCCCCC-------CeeecCCCCeEEe-
Q psy9228         145 NCINNGLCQDAATRIGYTC-ICPPGFSGDRCSV--------L------GEPCYPGACGD-------GSCQDVDGAMKCL-  201 (834)
Q Consensus       145 pC~n~g~C~~~~~~~~~~C-~C~~g~~G~~Ce~--------~------~~~C~~~~C~~-------g~C~~~~~~~~C~-  201 (834)
                      ||.|+|+|......+.++| .|++||+|.+||.        .      ...|.+-+|.+       ++|..  ....|. 
T Consensus         2 ~C~~~g~C~~~~~~g~~~C~~C~~g~~G~~Ce~C~~g~~g~~~~~~~~~~~C~~C~C~~~~~~~~~~~C~~--~tG~C~~   79 (162)
T 1klo_A            2 PCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNR--LTGECLK   79 (162)
T ss_dssp             CSCTTCCEEECSSSCCEEECSCCTTEESTTSCEECTTEEEETTCTTSSCEEEEECCSTTCBCTTCSCCBCT--TTCCBCC
T ss_pred             cCcCcCcccccCCCCCEEeCCCCCCCcCCCCcCCCCCCcCCcccccCCCCCCeeCcCCCCCCcccCCcccC--CCCcccC
Confidence            7999999987653467999 7999999999985        1      12344444542       35643  345795 


Q ss_pred             CCCCcccCcccc
Q psy9228         202 CPIGTAGKRCEQ  213 (834)
Q Consensus       202 C~~g~~G~~Ce~  213 (834)
                      |.++|+|.+||.
T Consensus        80 C~~g~~G~~Ce~   91 (162)
T 1klo_A           80 CIYNTAGFYCDR   91 (162)
T ss_dssp             BCTTEETTTTCE
T ss_pred             CCCCCcCCCcCc
Confidence            999999999986

>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A

Probab=97.46  E-value=3.8e-05  Score=55.27  Aligned_cols=33  Identities=30%  Similarity=0.825  Sum_probs=25.4

Q ss_pred             CCCCCCCCEeccCCCCCceEeeCCCCCCCCCCCC
Q psy9228         143 HNNCINNGLCQDAATRIGYTCICPPGFSGDRCSV  176 (834)
Q Consensus       143 ~~pC~n~g~C~~~~~~~~~~C~C~~g~~G~~Ce~  176 (834)
                      .+.|.| |+|.-....+.+.|.|++||+|.+||.
T Consensus        13 ~~yC~n-G~C~~~~~~~~~~C~C~~gy~G~RCe~   45 (50)
T 1iox_A           13 KHYCIK-GRCRFVVAEQTPSCVCDEGYIGARCER   45 (50)
T ss_dssp             TTSCTT-CCEEEETTTTEEEECCCTTEETTTTCE
T ss_pred             cCcccC-CEEEeEcCCCCeEEECCCCcccCCCCe
Confidence            688999 789633334678899999998888875

>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...

Probab=97.43  E-value=4.4e-05  Score=85.60  Aligned_cols=38  Identities=37%  Similarity=0.843  Sum_probs=32.6

Q ss_pred             CccCCCCCCCCCCCCEeccCCCCCceEeeCC-CCCCCCCCCCC
Q psy9228         136 NTCKSSKHNNCINNGLCQDAATRIGYTCICP-PGFSGDRCSVL  177 (834)
Q Consensus       136 ~~C~~~~~~pC~n~g~C~~~~~~~~~~C~C~-~g~~G~~Ce~~  177 (834)
                      ++|.   ++||+|||+|.+.. .++|+|.|+ +||+|.+||..
T Consensus         2 d~C~---s~PC~ngG~C~~~~-~~~y~C~C~~~G~~G~~Ce~~   40 (587)
T 3nt1_A            2 NPCC---SNPCQNRGECMSTG-FDQYKCDCTRTGFYGENCTTP   40 (587)
T ss_dssp             CTTT---TCCCCTTCEEEEEE-TTEEEEECTTSSEETTTTCEE
T ss_pred             CCCC---CCCCCCCCEeeCCC-CCCeEEecCCCCccCCCCCCc
Confidence            5788   99999999999531 278999999 99999999874

>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like domain, CRDGF, cytokine, glycoprotein, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=97.43  E-value=0.0001  Score=52.83  Aligned_cols=39  Identities=28%  Similarity=0.673  Sum_probs=28.1

Q ss_pred             ccCCCCCCCCCCCCEeccCCCCCceEeeCCCCCCCCCCCC
Q psy9228         137 TCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSV  176 (834)
Q Consensus       137 ~C~~~~~~pC~n~g~C~~~~~~~~~~C~C~~g~~G~~Ce~  176 (834)
                      +|.....+.|.|| +|.-....+.+.|.|++||+|.+||.
T Consensus        11 ~C~~~~~~yC~nG-~C~~i~~~~~~~C~C~~gy~G~RCe~   49 (50)
T 2rnl_A           11 PCNAEFQNFCIHG-ECKYIEHLEAVTCKCQQEYFGERCGE   49 (50)
T ss_dssp             TTTTTGGGTCSSS-EEEEETTTTEEEEECCSSCCSSSCCC
T ss_pred             ccCchhhCcCCCC-EEEEecCCCCeeEECCCCcccccccc
Confidence            4542224889985 99843334678999999999999974

>2v73_A CBM40, putative EXO-alpha-sialidase; carbohydrate-binding module, bacterial pathogen, sialic acid, sugar-binding protein; HET: SIA; 2.2A {Clostridium perfringens}

Probab=97.43  E-value=0.014  Score=54.74  Aligned_cols=135  Identities=11%  Similarity=0.045  Sum_probs=91.1

Q ss_pred             eeEEEEEEEeeCCCCeeEEEeccCCccccCCCCCeEEEEEECcEEEEEEec-c-c--EEE-EeeeeecCCCeEEEEEEEE
Q psy9228         405 LHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDV-G-L--VVL-RSKVTLVPHEWVVVTIIKD  479 (834)
Q Consensus       405 ~~~~i~~~frt~~~~GlLl~~~~~~~~~~~~~~d~~~l~L~~G~l~~~~~~-G-~--~~i-~s~~~~~dg~wH~V~v~~~  479 (834)
                      ...+|.++||+..+...=|+.-...    .....|+.|.|.+|.+.+.+.- + .  ... ++.....+++||+|.+..+
T Consensus        40 ~~gTI~v~fks~~~~~q~LfSIsN~----k~~n~yf~lyi~~g~lg~e~R~~~~~~~~~~~~~a~v~~~~~wntvaf~~d  115 (191)
T 2v73_A           40 EEGTIVTRFNMNDTSIQSLIGLSDG----NKANNYFSLYVSGGKVGYELRRQEGNGDFNVHHSADVTFNRGINTLALKIE  115 (191)
T ss_dssp             SSEEEEEEEEECCCSCEEEEEEECT----TCSSCEEEEEECSSEEEEEEEECTTSSCEEEEEEEECCCCSSCEEEEEEEE
T ss_pred             CCcEEEEEEecCCCcceEEEEccCC----CCccceEEEEEeCCEEEEEEecCCCceeeeeecccceecCCceEEEEEEEc
Confidence            3588999999998443334432221    3478999999999998888855 2 1  122 2222234459999999998


Q ss_pred             C-CeEEEEECCeeeeeeecCCC-ccccccCCCceeeccccCCCcccCcCcccccCceeEEeeeEEcCeeeeec
Q psy9228         480 F-KEGKLSVGGEPLIVGSTPGE-KLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLI  550 (834)
Q Consensus       480 ~-~~~~l~VD~~~~~~~~~~g~-~~~~l~~~~~l~iGG~~~~~~~~~~~~~~~~gF~GCi~~v~ing~~~~~~  550 (834)
                      . ...+|++||........+.. ....+ --..+.||+.....      ....-+|.|-|.++.+-.+.+.-.
T Consensus       116 ~~~~~~ly~NG~~V~t~~~~~~~fi~~i-~ln~~~IG~~~r~s------g~~~y~F~G~Id~~~iYn~aLs~e  181 (191)
T 2v73_A          116 KGIGAKIFLNGSLVKTVSDPNIKFLNAI-NLNSGFIGKTDRAN------GYNEYLFRGNIDFMNIYDKPVSDN  181 (191)
T ss_dssp             TTTEEEEEETTEEEEEEECTTCCCGGGS-CCCEEEESSCCCCS------SSCCCCCCEEEEEEEEESSCCCHH
T ss_pred             CCccEEEEECCEEEEEEecccccceeec-CCceEEEcceeecC------CceeeccCCeEEEEEEEcCcCCHH
Confidence            6 59999999998877654422 13334 33479999987631      122457999999999987766543

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=97.39  E-value=0.00013  Score=59.94  Aligned_cols=42  Identities=31%  Similarity=0.621  Sum_probs=32.6

Q ss_pred             CcEEEEecCC-CCCcccc----CC--CeEEEcccCCCCCeeEEEEEcCC
Q psy9228           2 AYIKWSRADG-LPLQRYA----EG--NVLRITNARLQDSGKYKCEIQGH   43 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~----~~--~~l~~~~~~~~d~g~y~c~~~~~   43 (834)
                      +.|+|.|.+. |....+.    .+  ..|+|.+++.+|+|.|.|.+.+.
T Consensus        25 p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~   73 (84)
T 2lu7_A           25 GPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDAPQD   73 (84)
T ss_dssp             TTCEEEETTEECCCCSSEEEEECSSCEEEEESSCSSTTCEEEEEECTTT
T ss_pred             cEEEEEECCEEccccccEEEeecCCeEEEEecCCCCcccEEEEEEECCE
Confidence            5799999555 7665443    22  37999999999999999999554

>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Mus musculus} SCOP: b.1.1.4

Probab=97.37  E-value=0.0002  Score=59.86  Aligned_cols=44  Identities=23%  Similarity=0.535  Sum_probs=35.3

Q ss_pred             CcEEEEecCC-----CCCccc------cCCC----eEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-----LPLQRY------AEGN----VLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-----~~~~~~------~~~~----~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.++     |+....      ..++    +|+|.+|..+|+|.|.|.|.+..+
T Consensus        45 PnVtWcK~~~~~c~~L~~~~q~~~~w~e~~n~s~fiL~f~~V~~sDsG~YrCsAn~~~g  103 (122)
T 1xau_A           45 PNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFNSQ  103 (122)
T ss_dssp             CCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEETTE
T ss_pred             CcEEEEecCCeeccccccceeeecceeccCCceeEEEEEeeEEEcCCccEEEEeeCCCC
Confidence            5899999987     544444      2344    999999999999999999987654

>2erf_A Thrombospondin-1; TSP-1, N-terminal TSPN, HBD, sugar binding protein; 1.45A {Homo sapiens} SCOP: b.29.1.4 PDB: 2es3_A 1z78_A

Probab=97.35  E-value=0.0044  Score=60.42  Aligned_cols=123  Identities=14%  Similarity=0.187  Sum_probs=81.4

Q ss_pred             eeEEEEEEEeeCC-CCeeEEEeccCCccccCCCCCeEEEEEECc--EEEEEEec-ccE-EE-EeeeeecCCCeEEEEEEE
Q psy9228         405 LHFSIELSFKPTD-YNGLIMYTGDSNMKSYKGKGDFVSFGLEDG--YPVFRFDV-GLV-VL-RSKVTLVPHEWVVVTIIK  478 (834)
Q Consensus       405 ~~~~i~~~frt~~-~~GlLl~~~~~~~~~~~~~~d~~~l~L~~G--~l~~~~~~-G~~-~i-~s~~~~~dg~wH~V~v~~  478 (834)
                      .+|+|.+.||... ..|.||...+.     .+...++.|.+...  .+.+.|.. |.. .+ .....+.||+||+|.+..
T Consensus        62 ~eFsi~~t~r~~~~~~~~LfsI~~~-----~~~~~ql~l~l~g~~~~l~~~y~~~g~~~~~~f~~v~l~dg~WH~l~l~V  136 (209)
T 2erf_A           62 KGFLLLASLRQMKKTRGTLLALERK-----DHSGQVFSVVSNGKAGTLDLSLTVQGKQHVVSVEEALLATGQWKSITLFV  136 (209)
T ss_dssp             TEEEEEEEEEECTTCEEEEEEEEET-----TSSCEEEEEEEETTTTEEEEEEEETTEEEEEEESSCCCCSSSEEEEEEEE
T ss_pred             CCEEEEEEEEcCCCCCceEEEEEcC-----CCCEEEEEEEEcCCCCEEEEEEcCCCCEEEEEEeccccCCCcEEEEEEEE
Confidence            5799999999665 56777744432     12367888888644  67777744 322 22 224568999999999999


Q ss_pred             ECCeEEEEECCeeeeeeecCCCccccccC----CCceeeccccCCCcccCcCcccccCceeEEeeeEEc
Q psy9228         479 DFKEGKLSVGGEPLIVGSTPGEKLQVLNL----RTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVL  543 (834)
Q Consensus       479 ~~~~~~l~VD~~~~~~~~~~g~~~~~l~~----~~~l~iGG~~~~~~~~~~~~~~~~gF~GCi~~v~in  543 (834)
                      .+..++|.||-...............+..    ...+++|-....          .. |.|=|+++.|-
T Consensus       137 ~~~~v~L~vDC~~~~~~~l~~~~~~~~~~~~~~~~~~~iGq~~~~----------~~-F~G~lq~l~i~  194 (209)
T 2erf_A          137 QEDRAQLYIDCEKMENAELDVPIQSVFTRDLASIARLRIAKGGVN----------DN-FQGVLQNVRFV  194 (209)
T ss_dssp             ETTEEEEEETTTEEEEEECSSCGGGTCCTTHHHHEEEEESCCTTT----------CB-CCEEEEEEEEE
T ss_pred             ECCEEEEEEcCeEeEeEEccCCchhccccccCCceEEEEecCCCC----------CC-CeEEeEEEEEE
Confidence            99999999998776654433220122211    346788854331          23 99999999873

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=97.35  E-value=0.00011  Score=61.33  Aligned_cols=42  Identities=19%  Similarity=0.494  Sum_probs=33.1

Q ss_pred             CcEEEEecCC-CCCcccc----CCC--eEEEcccCCCCCeeEEEEEcCC
Q psy9228           2 AYIKWSRADG-LPLQRYA----EGN--VLRITNARLQDSGKYKCEIQGH   43 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~----~~~--~l~~~~~~~~d~g~y~c~~~~~   43 (834)
                      ++|+|.|.+. |....+.    +++  .|+|.+++.+|+|.|.|.+.|.
T Consensus        35 ~~v~W~k~g~~i~~~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~   83 (91)
T 2lvc_A           35 APVRWYKDGQEVEESDFVVLENEGPHRRLVLPATQPSDGGEFQCVAGDE   83 (91)
T ss_dssp             SCCEEEETTSCCCCCSSCEEEEETTEEEEEESSCCGGGCSEEEEECSSC
T ss_pred             cEEEEEECCEEeeeeeeeeEEecCCeEEEEeCCCChhhcEEEEEEEcce
Confidence            5799999666 7665443    232  7999999999999999999654

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=97.34  E-value=0.00011  Score=63.58  Aligned_cols=44  Identities=20%  Similarity=0.392  Sum_probs=35.3

Q ss_pred             CcEEEEecCC-CCCcccc----C--CCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA----E--GNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~----~--~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.+. |....+.    +  ...|+|.+|+.+|+|.|+|.+.|..|
T Consensus        43 p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G   93 (107)
T 3knb_B           43 PVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNAAG   93 (107)
T ss_dssp             CEEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CEEEEEECcccccceeeEEEeecCceEEEEEecCChhhCEEEEEEEEECCC
Confidence            4799999666 8765443    1  23799999999999999999988765

>1za4_A Thrombospondin 1; TSP-1, NTSP-1, HBD, arixtra, cell adhesion; HET: SGN; 1.90A {Homo sapiens} SCOP: b.29.1.4 PDB: 2ouh_A 2ouj_A

Probab=97.32  E-value=0.0049  Score=61.79  Aligned_cols=123  Identities=15%  Similarity=0.211  Sum_probs=79.7

Q ss_pred             eeEEEEEEEeeCC-CCeeEEEeccCCccccCCCCCeEEEEEEC--cEEEEEEec-cc--EEEEeeeeecCCCeEEEEEEE
Q psy9228         405 LHFSIELSFKPTD-YNGLIMYTGDSNMKSYKGKGDFVSFGLED--GYPVFRFDV-GL--VVLRSKVTLVPHEWVVVTIIK  478 (834)
Q Consensus       405 ~~~~i~~~frt~~-~~GlLl~~~~~~~~~~~~~~d~~~l~L~~--G~l~~~~~~-G~--~~i~s~~~~~dg~wH~V~v~~  478 (834)
                      .+|+|.+.||... ..|.||...+.     .+...++.|.+..  ..+.+.|.. |.  ........+.||+||+|.+..
T Consensus        72 ~eFsil~tlr~~~~~~g~LfsI~~~-----~g~~~ql~l~~~G~~~~l~~~Y~~~g~~~~~~f~~~~L~Dg~WH~lalsV  146 (251)
T 1za4_A           72 KGFLLLASLRQMKKTRGTLLALERK-----DHSGQVFSVVSNGKAGTLDLSLTVQGKQHVVSVEEALLATGQWKSITLFV  146 (251)
T ss_dssp             TEEEEEEEEEECTTCEEEEEEEEET-----TSSCEEEEEEEETTTTEEEEEEEETTEEEEEEESSCCCCSSSCEEEEEEE
T ss_pred             CcEEEEEEEEecCCCCeEEEEEEeC-----CCCEEEEEEEECCCCcEEEEEEEcCCCeeeEEEecccccCCCEEEEEEEE
Confidence            5799999999766 55687755432     1124456665543  257777743 32  122234678999999999999


Q ss_pred             ECCeEEEEECCeeeeeeecCCCcccccc----CCCceeeccccCCCcccCcCcccccCceeEEeeeEEc
Q psy9228         479 DFKEGKLSVGGEPLIVGSTPGEKLQVLN----LRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVL  543 (834)
Q Consensus       479 ~~~~~~l~VD~~~~~~~~~~g~~~~~l~----~~~~l~iGG~~~~~~~~~~~~~~~~gF~GCi~~v~in  543 (834)
                      .+..++|+||................+.    ....++||-....          .. |.|=|++++|-
T Consensus       147 ~~~~VtLyvDC~~~~~~~l~~~~~~i~~~~~~~~~~~~iGq~~~~----------~~-F~G~lq~l~i~  204 (251)
T 1za4_A          147 QEDRAQLYIDCEKMENAELDVPIQSVFTRDLASIARLRIAKGGVN----------DN-FQGVLQNVRFV  204 (251)
T ss_dssp             ETTEEEEEETTSCCEEEECSSCGGGTSCTTGGGTEEEEESCCSTT----------CB-CCEEEEEEEEE
T ss_pred             ECCEEEEEECCcccceeeccCccccccccccCCCcEEEEEecCCC----------CC-CeEEeEEEEEE
Confidence            9999999999887665443322012221    2446788854331          23 99999999984

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=97.31  E-value=0.00016  Score=60.85  Aligned_cols=44  Identities=30%  Similarity=0.462  Sum_probs=35.6

Q ss_pred             CcEEEEecCC-CCCcccc--CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA--EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~--~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      +.|.|.|.+. |+...+.  .++.|.|.+++.+|+|.|.|.+.|..+
T Consensus        29 p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g   75 (95)
T 4hwu_A           29 AVISWTKDGVHLGPNNRTVLIGEYLQIKGATPRDSGLYACTAARTVD   75 (95)
T ss_dssp             CEEEEEETTEEECCCSSEEEETTEEEECSCCGGGCEEEEEEEECSSC
T ss_pred             CEEEEEECCEECCCCceEEEeCCEEEECcCCcccCEEEEEEEccCCC
Confidence            5799999655 6554333  578999999999999999999987765

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=97.31  E-value=0.00017  Score=61.07  Aligned_cols=44  Identities=25%  Similarity=0.449  Sum_probs=35.7

Q ss_pred             CcEEEEecCC--CCCccccCCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG--LPLQRYAEGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~--~~~~~~~~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .+|.|.|.+.  ++......++.|+|.+|+.+|+|.|.|.+.|..+
T Consensus        41 ~~v~W~k~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g   86 (98)
T 1gl4_B           41 YTLVWTRLHNGKLPSRAMDFNGILTIRNVQPSDAGTYVCTGSNMFA   86 (98)
T ss_dssp             CEEEEEEGGGBCCCTTEEEETTEEEECSCCGGGCEEEEEEEECSSC
T ss_pred             cEEEEEeCCCCCCCceeecCCCEEEEeCCChhhCEEEEEEecCCCC
Confidence            4799999654  5544444678999999999999999999988765

>2jkb_A Sialidase B; intramolecular trans-sialidase, lyase, glycosidase, neuraminidase; HET: SKD; 1.54A {Streptococcus pneumoniae} PDB: 2vw2_A* 2vw1_A* 2vw0_A*

Probab=97.29  E-value=0.0045  Score=71.67  Aligned_cols=155  Identities=14%  Similarity=0.190  Sum_probs=98.5

Q ss_pred             eeeEEcCCceeeechhhhhhc-cCcceEEEEEEeCCCC--eeEEecCCCCCCCCCCcceEEEEEE-CCEEEEEEEcCCc-
Q psy9228         652 SEVHFLGEGYVELKKELIEER-RNEETIAFDFVTDDKN--ALLLWNGQPSYKNGIGREFIAVAVV-NGYLEYSYDLGDG-  726 (834)
Q Consensus       652 ~~~~F~g~s~~~~~~~~~~~~-~~~~~i~~~frT~~~~--GlLl~~~~~~~~~~~~~~~~~l~l~-~G~l~~~~~~g~~-  726 (834)
                      .++.|+|++ +.++...+... ....+|.|+|++....  -.||.+.....  .....|+.|+|. +|.+.+.+....+ 
T Consensus        35 ~~~~~~~~~-~~l~~~~~~~~~~~~~T~~~~~~~~~~~~~~~lfs~sn~~~--~~~~~~~~~~i~~~g~~~~~~r~~~~~  111 (686)
T 2jkb_A           35 GSYQLNNKS-IDISSLLLDKLSGESQTVVMKFKADKPNSLQALFGLSNSKA--GFKNNYFSIFMRDSGEIGVEIRDAQKG  111 (686)
T ss_dssp             EEEEEESSC-EECHHHHGGGCCSSCEEEEEEEECSSCCSEEEEEEEECCST--TCTTCEEEEEEETTSCEEEEEEETTTT
T ss_pred             ccEEEcCCe-EECChhhhhhcccCceEEEEEEEccCCCCeeEEEEeecCcc--cccCcceEEEEcCCCeEEEEEecCCCC
Confidence            478898766 67765443321 2567999999987643  25665554321  122579999997 8888887664433 


Q ss_pred             E-EEEEeCCceec---CC--CcEEEEEEEE--CCEEEEEEcCeeeecccCCCC--ccceecCCceEEcCcCCCCCCCCCc
Q psy9228         727 V-VTIKFSKKPVN---DG--IKHSVNVTRI--NKFGSLEVDSVIVGKGESPGS--QDVINTRGNIYLGGTPNMDLMTGGR  796 (834)
Q Consensus       727 ~-~~l~~s~~~~n---Dg--~wH~V~i~r~--~~~~~l~VD~~~~~~~~~~~~--~~~l~~~~~lyiGG~p~~~~~~~~~  796 (834)
                      . ..+. .+.++.   .|  +||+|.|...  .+.++|+|||..+.......-  ...+.-...+-||++...     ..
T Consensus       112 ~~~~~~-~~~~~~~~~~~~~~~~~va~~~d~~~~~~~lyvnG~~v~~~~~~~~~~~~~~~~~~~~~iG~~~~~-----g~  185 (686)
T 2jkb_A          112 INYLFS-RPASLWGKHKGQAVENTLVFVSDSKDKTYTMYVNGIEVFSETVDTFLPISNINGIDKATLGAVNRE-----GK  185 (686)
T ss_dssp             EEEEEE-ESSCCCCEETTEECCEEEEEEEETTTTEEEEEETTEEEEEEECSSCCCGGGSTTCCEEEESSEEET-----TE
T ss_pred             eeeecc-ccccccccccCCcceeEEEEEEECCCCeEEEEECCEEEEeecccccceeccCCCcceeeecccccC-----Cc
Confidence            2 2222 233444   45  8999999999  679999999999876543221  112222257889984322     11


Q ss_pred             cCCCceEEEEEEEECCcee
Q psy9228         797 YVHPMSGLMMNIHIQNKHI  815 (834)
Q Consensus       797 ~~~~F~GCi~~v~in~~~~  815 (834)
                      ..-+|.|=|++|+|-+..+
T Consensus       186 ~~~~f~G~id~~~iy~~~L  204 (686)
T 2jkb_A          186 EHYLAKGSIDEISLFNKAI  204 (686)
T ss_dssp             EESCCEEEEEEEEEESSCC
T ss_pred             ccccccceEeEEEEecCCC
Confidence            1225999999999988654

>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1

Probab=97.27  E-value=0.00019  Score=52.96  Aligned_cols=32  Identities=25%  Similarity=0.462  Sum_probs=27.6

Q ss_pred             CCCCCccC----------CCCCCCeeecCCCCeEEeCCCCccc
Q psy9228         176 VLGEPCYP----------GACGDGSCQDVDGAMKCLCPIGTAG  208 (834)
Q Consensus       176 ~~~~~C~~----------~~C~~g~C~~~~~~~~C~C~~g~~G  208 (834)
                      +++|+|..          .||. ++|++..++|.|.|++||++
T Consensus         2 ~DidEC~~~~~~~~~~~~~~C~-~~C~n~~Gsy~C~C~~Gy~~   43 (53)
T 1apq_A            2 VDLDECASRSKSGEEDPQPQCQ-HLCHNYVGGYFCSCRPGYEL   43 (53)
T ss_dssp             CSCCTTTCSTTTCCCSSSCTTS-SEEEEETTEEEEECSTTCEE
T ss_pred             CccccccCcccccccccCCCCC-CEeECCCCCeEEECCCCCeE
Confidence            57889985          6787 49999999999999999984

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=97.26  E-value=0.00022  Score=60.03  Aligned_cols=44  Identities=23%  Similarity=0.394  Sum_probs=35.4

Q ss_pred             CcEEEEecCC-CCCcccc--CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA--EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~--~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .+|.|.|.+. |+...+.  .++.|.|.+++.+|+|.|.|.+.|..+
T Consensus        38 p~i~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g   84 (95)
T 2ckn_A           38 QSINWLRDGVQLVESNRTRITGEEVEVRDSIPADSGLYACVTSSPSG   84 (95)
T ss_dssp             CEEEEEBTTBCCCCCSSEEECSSEEEESSCCGGGSEEEEEEEEETTE
T ss_pred             CceEEEECCEecCCCCCEEEeCCEEEECCCChHHCEEEEEEeccCCC
Confidence            3799999555 6654333  578999999999999999999987755

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=97.25  E-value=0.00015  Score=60.82  Aligned_cols=42  Identities=17%  Similarity=0.300  Sum_probs=32.6

Q ss_pred             CcEEEEecCC-CCCcccc----CC--CeEEEcccCCCCCeeEEEEEcCC
Q psy9228           2 AYIKWSRADG-LPLQRYA----EG--NVLRITNARLQDSGKYKCEIQGH   43 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~----~~--~~l~~~~~~~~d~g~y~c~~~~~   43 (834)
                      +.|+|.|.+. |....+.    ++  ..|+|.+|+.+|+|.|.|.+.|.
T Consensus        34 ~~v~W~k~g~~i~~~~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a~n~   82 (93)
T 1waa_A           34 VHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANT   82 (93)
T ss_dssp             CCCEEEETTEECCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEETTE
T ss_pred             CeEEEEECCEECcCCCCEEEEEECCEEEEEECCCChhhCEEEEEEECCC
Confidence            4789999555 7654333    22  37999999999999999999764

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.24  E-value=0.00034  Score=59.33  Aligned_cols=44  Identities=23%  Similarity=0.415  Sum_probs=35.9

Q ss_pred             CcEEEEecCC-CCCcccc--CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA--EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~--~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .+|.|.|.+. |+...+.  .+..|.|.+|+.+|+|.|.|.+.|..+
T Consensus        32 p~i~W~k~g~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g   78 (99)
T 2cr3_A           32 QSINWLRDGVQLAESNRTRITGEEVEVQDSVPADSGLYACVTSSPSG   78 (99)
T ss_dssp             CEEEEEESSSBCCCCSSEEECSSEEEETTCCTTTCEEEEEEEEETTE
T ss_pred             CeEEEEECCEECCCCCcEEEECCEEEEccCCHHHCEEEEEEEEeCCc
Confidence            3799999766 7654433  578999999999999999999987755

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=97.21  E-value=0.0002  Score=61.00  Aligned_cols=44  Identities=20%  Similarity=0.255  Sum_probs=34.4

Q ss_pred             CcEEEEecCC-CCCccc--c----C--CCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRY--A----E--GNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~--~----~--~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.+. |+....  .    .  ...|.|.+++.+|+|.|+|.++|..|
T Consensus        35 p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G   87 (100)
T 3knb_A           35 PEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFG   87 (100)
T ss_dssp             CEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CEEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEEEEECCC
Confidence            4799999665 765432  1    1  23799999999999999999998765

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=97.21  E-value=0.00011  Score=78.49  Aligned_cols=28  Identities=39%  Similarity=0.914  Sum_probs=0.0

Q ss_pred             ccCCCceeeecCCCcEEcCCCCCCCCCcccc
Q psy9228         617 VCKNGGMCKVTPDSYECLCSLGYAPPNCAKR  647 (834)
Q Consensus       617 pC~ngg~C~~~~~~~~C~C~~g~~G~~Ce~~  647 (834)
                      ||+|||+|.+..   +|.|++||+|..||.-
T Consensus       372 ~C~ngg~C~~~~---~C~C~~G~~G~~Ce~c  399 (426)
T 3zyj_B          372 HCQNGGTCHNNV---RCLCPAAYTGILCEKL  399 (426)
T ss_dssp             -------------------------------
T ss_pred             cCCCCCCcCCCC---CCcCCCCCcCCCCcCC
Confidence            899999998866   9999999999999864

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.20  E-value=0.00038  Score=59.05  Aligned_cols=44  Identities=30%  Similarity=0.549  Sum_probs=35.2

Q ss_pred             CcEEEEecCC-CCC-cccc---CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPL-QRYA---EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~-~~~~---~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .+|.|.|.+. |+. ..+.   .++.|+|.+|+.+|+|.|.|.+.|..+
T Consensus        38 p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g   86 (100)
T 2edj_A           38 PVISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISDTGTYTCVATSSSG   86 (100)
T ss_dssp             CEEEEEESSSEESSSCSSCEECTTCCEEEESCCTTTCCEEEEEEECSSC
T ss_pred             CEEEEEECCEECCCCCCCEEEcCCCEEEEccCCcccCEEEEEEEEcCCC
Confidence            4799999766 663 2222   577999999999999999999998765

>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex (toxin-growth factor), diphtheria toxin, receptor, H binding epidermal growth factor; 2.65A {Homo sapiens} SCOP: g.3.11.1

Probab=97.20  E-value=0.00011  Score=57.73  Aligned_cols=38  Identities=32%  Similarity=0.738  Sum_probs=29.7

Q ss_pred             CCCCcc---CCCCCCCeee--cCCCCeEEeCCCCcccCccccc
Q psy9228         177 LGEPCY---PGACGDGSCQ--DVDGAMKCLCPIGTAGKRCEQK  214 (834)
Q Consensus       177 ~~~~C~---~~~C~~g~C~--~~~~~~~C~C~~g~~G~~Ce~~  214 (834)
                      ..++|.   .+.|.||+|.  ...+.+.|.|++||+|.+||..
T Consensus        36 ~~~pC~~~~~~yClnG~C~~i~~~~~~~C~C~~GYtG~RCE~l   78 (79)
T 1xdt_R           36 KRDPCLRKYKDFCIHGECKYVKELRAPSCICHPGYHGERCHGL   78 (79)
T ss_dssp             ---CTTTTTTTCCSSEEECCBGGGTBCCEEECTTEESTTCCEE
T ss_pred             cCCCCCccccCcCCCCEeeeecCCCCeEEEcCCCccccccccc
Confidence            346787   6899999995  3347899999999999999863

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.19  E-value=0.0003  Score=59.55  Aligned_cols=44  Identities=23%  Similarity=0.349  Sum_probs=35.2

Q ss_pred             CcEEEEecCC-CCCcccc---CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA---EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~---~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|.|.|.+. ++.....   .+..|+|.+++.+|+|.|.|.+.|..+
T Consensus        41 p~v~W~~~g~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g   88 (99)
T 2yr3_A           41 PRITWLLNGQPIQYARSTCEAGVAELHIQDALPEDHGTYTCLAENALG   88 (99)
T ss_dssp             CCCEEEESSSBCSSCCCEEETTEEEEEECSCCTTCCBCEEEEEECSSC
T ss_pred             CeEEEEECCEECcccceEeeCCeEEEEECCCChhhCEEEEEEEEECCC
Confidence            4789999666 6654433   345899999999999999999988765

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.18  E-value=0.00028  Score=60.12  Aligned_cols=42  Identities=24%  Similarity=0.291  Sum_probs=33.1

Q ss_pred             CcEEEEecCC-CCCcccc----CC--CeEEEcccCCCCCeeEEEEEcCC
Q psy9228           2 AYIKWSRADG-LPLQRYA----EG--NVLRITNARLQDSGKYKCEIQGH   43 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~----~~--~~l~~~~~~~~d~g~y~c~~~~~   43 (834)
                      .+|+|.|.+. |....+.    .+  ..|+|.+|+.+|+|.|.|.+.|.
T Consensus        35 p~v~W~k~g~~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   83 (100)
T 2yuz_A           35 IPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDAY   83 (100)
T ss_dssp             CCEEEEETTEECCCCSSEEEEECSSEEEEEESSCCGGGCSEEEEEESSS
T ss_pred             CeEEEEECCEECCCCCcEEEEEeCCEEEEEECCCChhhCEEEEEEEcCC
Confidence            5799999655 7654432    22  37999999999999999999876

>2sli_A Intramolecular trans-sialidase; hydrolase, neuraminidase; HET: SKD; 1.80A {Macrobdella decora} SCOP: b.29.1.9 b.68.1.1 PDB: 1sll_A 1sli_A* 3sli_A* 4sli_A*

Probab=97.14  E-value=0.0068  Score=70.04  Aligned_cols=156  Identities=19%  Similarity=0.253  Sum_probs=99.2

Q ss_pred             eeeEEcCCceeeechhhhhhc---cCcceEEEEEEeCCCC--eeEEecCCCCCCCCCCcceEEEEEE-CCEEEEEEEcCC
Q psy9228         652 SEVHFLGEGYVELKKELIEER---RNEETIAFDFVTDDKN--ALLLWNGQPSYKNGIGREFIAVAVV-NGYLEYSYDLGD  725 (834)
Q Consensus       652 ~~~~F~g~s~~~~~~~~~~~~---~~~~~i~~~frT~~~~--GlLl~~~~~~~~~~~~~~~~~l~l~-~G~l~~~~~~g~  725 (834)
                      ..+.+++.+.+.++...+.+.   ....+|.|+||+...+  -.||.+....  .+....|+.|+|. +|.+.|.+....
T Consensus        10 ~~~~~~~~~~~~l~~~~~~~~~~~l~~~Ti~~~~~~~~~~~~~~lfs~s~~~--~~~~~~~~~~~i~~~g~~~~~~r~~~   87 (679)
T 2sli_A           10 NNVDIAEGQGYSLDQEAGAKYVKAMTQGTIILSYKSTSENGIQSLFSVGNST--AGNQDRHFHIYITNSGGIGIELRNTD   87 (679)
T ss_dssp             EEEEECTTTCEECTTSTTHHHHTTCSSEEEEEEEEECCCCSEEEEEEEECCS--TTCTTEEEEEEEETTSCEEEEEEECT
T ss_pred             ccEEecCCCceeCCHHHHHHhhccccCeEEEEEEEcCCCCCceEEEEeecCC--ccccCcceEEEEcCCCeEEEEEecCC
Confidence            357788766678875433211   3678999999997643  3566555432  1112579999998 588877755442


Q ss_pred             c--EEEEEeCCceec---CC--CcEEEEEEEE--CCEEEEEEcCeeeecccCCCC--ccceecCCceEEcCcCCCCCCCC
Q psy9228         726 G--VVTIKFSKKPVN---DG--IKHSVNVTRI--NKFGSLEVDSVIVGKGESPGS--QDVINTRGNIYLGGTPNMDLMTG  794 (834)
Q Consensus       726 ~--~~~l~~s~~~~n---Dg--~wH~V~i~r~--~~~~~l~VD~~~~~~~~~~~~--~~~l~~~~~lyiGG~p~~~~~~~  794 (834)
                      +  ...+. ...+|-   .|  +||+|.|+..  .+.++|+|||..+.+......  ...+.....+.||+....     
T Consensus        88 ~~~~~~~~-~~~~~~~~~~~~~~~~~va~~~~~~~~~~~lyvnG~~v~~~~~~~~~f~~~~~~~~~~~iG~~~~~-----  161 (679)
T 2sli_A           88 GVFNYTLD-RPASVRALYKGERVFNTVALKADAANKQCRLFANGELLATLDKDAFKFISDITGVDNVTLGGTKRQ-----  161 (679)
T ss_dssp             TTCEEEEE-ESSCCCSEETTEECCEEEEEEEETTTTEEEEEETTEEEEEEECSSCCCGGGSTTCCEEEESSEEET-----
T ss_pred             CCeeeecc-cccccccccCCCceeEEEEEEEECCCCeEEEEECCEEeEeecccccccccccCCCceEEEeeeecC-----
Confidence            2  22222 233343   35  7999999999  589999999999876533211  112333367999994221     


Q ss_pred             CccCCCceEEEEEEEECCcee
Q psy9228         795 GRYVHPMSGLMMNIHIQNKHI  815 (834)
Q Consensus       795 ~~~~~~F~GCi~~v~in~~~~  815 (834)
                      ....-+|.|=|++|+|-+..+
T Consensus       162 g~~~~~f~G~i~~~~iy~~~L  182 (679)
T 2sli_A          162 GKIAYPFGGTIGDIKVYSNAL  182 (679)
T ss_dssp             TEEESCCCEEEEEEEEESSCC
T ss_pred             CceeccccceEeEEEEeCCCC
Confidence            111226999999999987643

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=97.14  E-value=0.00039  Score=59.88  Aligned_cols=44  Identities=23%  Similarity=0.333  Sum_probs=33.3

Q ss_pred             CcEEEEecCC-CCCcccc----CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA----EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~----~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|.|.|.+. ++...+.    .+..|.|.+|+.+|+|.|.|.+.|..+
T Consensus        40 p~i~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g   88 (108)
T 3kvq_A           40 PQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLG   88 (108)
T ss_dssp             CCEEEEESSSBCCCBTTEEEETTTTEEEECSCCGGGCEEEEEEEC----
T ss_pred             CeEEEEECCeEcccCCCeEEeCCCcEEEEeecCcccCEEEEEEEEeCCC
Confidence            4799999777 7654433    467999999999999999999987765

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=97.11  E-value=0.00023  Score=59.47  Aligned_cols=44  Identities=20%  Similarity=0.368  Sum_probs=35.6

Q ss_pred             CcEEEEecC--C-CCCcccc----CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRAD--G-LPLQRYA----EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~--~-~~~~~~~----~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .+|+|.|.+  . |+.....    ....|.|.+++.+|+|.|.|.+.|..+
T Consensus        32 p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G   82 (93)
T 1wit_A           32 PTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELG   82 (93)
T ss_dssp             CEEEEECSTTTCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEETTE
T ss_pred             CEEEEEECCCCcccCCcEEEEecCCEEEEEECCCChhcCEEEEEEEEcCCC
Confidence            479999988  5 7655433    246799999999999999999988765

>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF, protein-protein complex, IMM system; HET: NAG FUL; 2.80A {Homo sapiens} SCOP: b.1.1.1

Probab=97.10  E-value=0.00054  Score=56.48  Aligned_cols=44  Identities=23%  Similarity=0.520  Sum_probs=37.4

Q ss_pred             CcEEEEecCC-----CCCccc---cCCC----eEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-----LPLQRY---AEGN----VLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-----~~~~~~---~~~~----~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++++|.|.+|     ||.+..   ..++    +|+|..|-.+|+|.|.|.+....+
T Consensus        42 P~VtWcKln~~~c~~L~~~~q~w~E~~N~s~fvLhf~~V~~sDsGsYRCsAn~~sg   97 (120)
T 2aw2_A           42 PHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQSN   97 (120)
T ss_dssp             CEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CceEEEecCCceEEECccccccceecCCeeEEEEEEeeeeEcCCcceEEEeeCCCC
Confidence            5899999996     776666   5678    999999999999999999976654

>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like domain, CRDGF, cytokine, glycoprotein, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=97.08  E-value=0.0004  Score=49.73  Aligned_cols=35  Identities=31%  Similarity=0.789  Sum_probs=29.4

Q ss_pred             CCccC---CCCCCCeee--cCCCCeEEeCCCCcccCcccc
Q psy9228         179 EPCYP---GACGDGSCQ--DVDGAMKCLCPIGTAGKRCEQ  213 (834)
Q Consensus       179 ~~C~~---~~C~~g~C~--~~~~~~~C~C~~g~~G~~Ce~  213 (834)
                      ++|..   +.|.||+|.  ...+.+.|.|+.||+|.+||.
T Consensus        10 ~~C~~~~~~yC~nG~C~~i~~~~~~~C~C~~gy~G~RCe~   49 (50)
T 2rnl_A           10 NPCNAEFQNFCIHGECKYIEHLEAVTCKCQQEYFGERCGE   49 (50)
T ss_dssp             CTTTTTGGGTCSSSEEEEETTTTEEEEECCSSCCSSSCCC
T ss_pred             cccCchhhCcCCCCEEEEecCCCCeeEECCCCcccccccc
Confidence            46663   789999997  555789999999999999985

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=97.07  E-value=0.00041  Score=59.37  Aligned_cols=44  Identities=16%  Similarity=0.340  Sum_probs=34.5

Q ss_pred             CcEEEEecCC-CCCcccc-------C----CCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA-------E----GNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~-------~----~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.+. |....+.       .    .+.|+|.+++.+|+|.|+|.+.|..|
T Consensus        31 P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G   86 (103)
T 1wwb_X           31 PALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYG   86 (103)
T ss_dssp             CEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSC
T ss_pred             CEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCC
Confidence            4899999655 7655431       1    23499999999999999999998876

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=97.06  E-value=0.00059  Score=59.48  Aligned_cols=44  Identities=18%  Similarity=0.273  Sum_probs=35.3

Q ss_pred             CcEEEEecCC-CCCcccc------CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA------EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~------~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .+|.|.|.+. |....+.      ....|+|.+|+.+|+|.|.|.+.|..+
T Consensus        37 p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g   87 (114)
T 2cqv_A           37 ITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLG   87 (114)
T ss_dssp             CEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSC
T ss_pred             CEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhcCEEEEEEEEECCC
Confidence            4799999776 7654333      146899999999999999999988765

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=97.03  E-value=0.00027  Score=62.69  Aligned_cols=44  Identities=14%  Similarity=0.263  Sum_probs=35.7

Q ss_pred             CcEEEEecCC-CCCcccc-------------CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA-------------EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~-------------~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .+|+|.|.+. |+...+.             ..+.|+|.+++.+|+|.|.|.|.|..|
T Consensus        30 P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G   87 (126)
T 1he7_A           30 PSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFG   87 (126)
T ss_dssp             CEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTE
T ss_pred             CeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCC
Confidence            4899999655 8765432             136899999999999999999998887

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.01  E-value=0.00079  Score=59.10  Aligned_cols=44  Identities=23%  Similarity=0.424  Sum_probs=34.4

Q ss_pred             CcEEEEecCC-CCCcccc---CC--CeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA---EG--NVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~---~~--~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .+|.|.|.+. |+..+..   .+  ..|+|.+++.+|+|.|.|.+.|..+
T Consensus        54 p~i~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G  103 (118)
T 2e7c_A           54 PQVVWTKGGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENM  103 (118)
T ss_dssp             CEEEEEETTEECCCSSCEEEECSSEEEEEESSCCTTTCEEEEEEEECSSC
T ss_pred             CEEEEEECCEECCCCcEEEEECCCeEEEEECCCChhcCEEEEEEEEeCCC
Confidence            4799999666 8743322   23  3599999999999999999998775

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=97.01  E-value=0.00059  Score=57.46  Aligned_cols=44  Identities=18%  Similarity=0.379  Sum_probs=35.2

Q ss_pred             CcEEEEecCC-CCCcccc----CCC--eEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA----EGN--VLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~----~~~--~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|.|.|.+. |+...+.    .++  .|.|.+|+.+|+|.|.|.+.|..+
T Consensus        32 ~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g   82 (97)
T 2bk8_A           32 TQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYG   82 (97)
T ss_dssp             CEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSC
T ss_pred             CEEEEEECCEECcCCCCEEEEEcCCeEEEEEecCChhhCeEEEEEEECCCC
Confidence            4799999666 7654332    344  899999999999999999998765

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.99  E-value=0.0006  Score=59.89  Aligned_cols=44  Identities=30%  Similarity=0.519  Sum_probs=35.1

Q ss_pred             CcEEEEecCC-CCCc-ccc---CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQ-RYA---EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~-~~~---~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .+|.|.|.+. |+.. .+.   .++.|+|.+|+.+|+|.|.|.+.|..+
T Consensus        38 p~i~W~k~g~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g   86 (118)
T 2eo9_A           38 PTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIASTPSG   86 (118)
T ss_dssp             CEEEEEESSSBCCTTSTTEEEEETTEEEEESCCGGGCCCEEEEEECSSC
T ss_pred             CEEEEEECCEECcCCCCeEEEccCCEEEEccCCcCCCEEEEEEEEcCCC
Confidence            4799999666 7542 221   477999999999999999999988765

>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A

Probab=96.98  E-value=0.0002  Score=66.89  Aligned_cols=38  Identities=34%  Similarity=0.804  Sum_probs=35.1

Q ss_pred             CCCCCCCCCCCCeecccCCCCCceeeecCCCCCCCCCccCc
Q psy9228         569 PVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKEN  609 (834)
Q Consensus       569 ~~C~~~pC~ngg~C~~~~~~~~~~~C~C~~G~~G~~Ce~~~  609 (834)
                      ++|.++||+++|+|.+.+.   .|.|.|.+||+|..||++|
T Consensus       120 ~~~~~~pc~~~g~C~~~~~---~~~c~C~~g~~g~~Ce~~~  157 (157)
T 1g1t_A          120 AACTNTSCSGHGECVETIN---NYTCKCDPGFSGLKCEQIV  157 (157)
T ss_dssp             CCCCTTGGGGSEEEEEETT---EEEEEECTTEESTTSCEEC
T ss_pred             CCCCCCCCCCCCEeecCCC---CeeEECCCCccCccccccC
Confidence            6788999999999999998   9999999999999999764

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=96.94  E-value=0.00081  Score=55.84  Aligned_cols=41  Identities=15%  Similarity=0.390  Sum_probs=33.9

Q ss_pred             CcEEEEecCC-CCCccccCCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYAEGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .+|.|.|.+. ++..   ....|.|.+++.+|+|.|.|.+.|..+
T Consensus        33 p~i~W~~~~~~~~~~---~~~~L~i~~v~~~d~G~Y~C~a~n~~g   74 (91)
T 3bfo_A           33 PHYQWFKNELPLTHE---TKKLYMVPYVDLEHQGTYWCHVYNDRD   74 (91)
T ss_dssp             CEEEEEETTEECTTC---CSSEEEESSCCGGGCEEEEEEEECSSC
T ss_pred             CEEEEEcCCeeCCcC---CCCeEEECCCCHHhCEEEEEEEEcCCC
Confidence            4799999655 6544   246899999999999999999988765

>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A

Probab=96.92  E-value=0.00057  Score=48.85  Aligned_cols=31  Identities=32%  Similarity=0.805  Sum_probs=27.1

Q ss_pred             CCCCCCeeecC--CCCeEEeCCCCcccCccccc
Q psy9228         184 GACGDGSCQDV--DGAMKCLCPIGTAGKRCEQK  214 (834)
Q Consensus       184 ~~C~~g~C~~~--~~~~~C~C~~g~~G~~Ce~~  214 (834)
                      +.|.||+|.-.  .+.+.|.|+.||+|.+||..
T Consensus        14 ~yC~nG~C~~~~~~~~~~C~C~~gy~G~RCe~~   46 (50)
T 3e50_C           14 QFCFHGTCRFLVQEDKPACVCHSGYVGARCEHA   46 (50)
T ss_pred             CcccCCEEeeccCCCCeEEECCCCCcccCCCce
Confidence            78999999864  47899999999999999864

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=96.90  E-value=0.00061  Score=57.68  Aligned_cols=44  Identities=14%  Similarity=0.351  Sum_probs=34.9

Q ss_pred             CcEEEEecCC-CCCcccc-------CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA-------EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~-------~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|.|.|.+. |....+.       .+..|.|.+|+.+|+|.|.|.+.|..+
T Consensus        38 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g   89 (100)
T 3caf_A           38 PTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYG   89 (100)
T ss_dssp             CEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTE
T ss_pred             CEEEEEECCEEcccccccccEEEecCeEEEEEccCCcCCCEEEEEEEEeCCC
Confidence            4799999666 7654332       245899999999999999999987765

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=96.90  E-value=0.00064  Score=57.39  Aligned_cols=44  Identities=16%  Similarity=0.151  Sum_probs=34.3

Q ss_pred             CcEEEEecCC-CCCcccc-----CCC--eEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA-----EGN--VLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~-----~~~--~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .+|.|.|.+. |....+.     .++  .|+|.+|+.+|+|.|.|.+.|..+
T Consensus        35 p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g   86 (99)
T 1g1c_A           35 PECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAG   86 (99)
T ss_dssp             CEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTE
T ss_pred             CEEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEEEECCC
Confidence            4799999666 6654332     233  799999999999999999988765

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=96.86  E-value=0.00073  Score=57.13  Aligned_cols=44  Identities=18%  Similarity=0.348  Sum_probs=34.2

Q ss_pred             CcEEEEecCC-CCCcccc-----CCC--eEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA-----EGN--VLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~-----~~~--~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|.|.|.+. |+...+.     .++  .|+|.+|+.+|+|.|.|.+.|..+
T Consensus        35 p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g   86 (100)
T 2kdg_A           35 PDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAG   86 (100)
T ss_dssp             CEEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCC
Confidence            4799999655 6554322     233  899999999999999999988765

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=96.82  E-value=0.00077  Score=56.87  Aligned_cols=44  Identities=27%  Similarity=0.465  Sum_probs=34.1

Q ss_pred             CcEEEEecCC-CCCcccc-----CCC--eEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA-----EGN--VLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~-----~~~--~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|.|.|.+. |+.....     .++  .|+|.+|+.+|+|.|.|.+.|..+
T Consensus        35 p~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~g   86 (99)
T 1u2h_A           35 PVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYG   86 (99)
T ss_dssp             CEEEEEETTEECCCBTTEEEEECGGGEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CEEEEEECCEECCCCCCEEEEECCCCEEEEEEccCCcCCCEEEEEEEEECCC
Confidence            4799999666 7654321     222  699999999999999999988765

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=96.81  E-value=0.00091  Score=70.10  Aligned_cols=43  Identities=23%  Similarity=0.297  Sum_probs=39.4

Q ss_pred             cEEEEecCC-CCCccccCCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           3 YIKWSRADG-LPLQRYAEGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         3 ~~~w~~~~~-~~~~~~~~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .|+|.|.++ ||......++.|.|.+|+.+|+|.|.|.++|..|
T Consensus       249 ~v~W~~~~~~l~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G  292 (313)
T 4fqp_A          249 GYNWSTTMGPLPPFAVAQGAQLLIRPVDKPINTTLICNVTNALG  292 (313)
T ss_dssp             EEEEEETTBSCCTTEEEETTEEEECCCSSCCEEEEEEEEECSSC
T ss_pred             EEEEEECCEECCCceEEeCCEEEECcCChhhCEEEEEEEEeCCC
Confidence            589999888 9988877889999999999999999999998876

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=96.80  E-value=0.00057  Score=60.06  Aligned_cols=44  Identities=11%  Similarity=0.199  Sum_probs=35.4

Q ss_pred             CcEEEEecCC-CCCcccc----------CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA----------EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~----------~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.+. |....+.          .++.|.|.+++.+|+|.|.|.+.|..|
T Consensus        35 p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G   89 (118)
T 1wwc_A           35 PTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLG   89 (118)
T ss_dssp             CEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTE
T ss_pred             CeEEEEECCEECCCCCceeEEEeccCccccEEEEECCCChhcCEEEEEEEECCCC
Confidence            4799999665 7665432          245899999999999999999988765

>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A

Probab=96.78  E-value=0.00032  Score=65.45  Aligned_cols=38  Identities=29%  Similarity=0.747  Sum_probs=33.8

Q ss_pred             cCCCCCCccCCCceeeecCCCcEEcCCCCCCCCCccccc
Q psy9228         610 NMCMKGDVCKNGGMCKVTPDSYECLCSLGYAPPNCAKRV  648 (834)
Q Consensus       610 ~~C~~~~pC~ngg~C~~~~~~~~C~C~~g~~G~~Ce~~~  648 (834)
                      ++|.+. ||.++|+|.+.+..|.|.|.+||+|.+||..+
T Consensus       120 ~~~~~~-pc~~~g~C~~~~~~~~c~C~~g~~g~~Ce~~~  157 (157)
T 1g1t_A          120 AACTNT-SCSGHGECVETINNYTCKCDPGFSGLKCEQIV  157 (157)
T ss_dssp             CCCCTT-GGGGSEEEEEETTEEEEEECTTEESTTSCEEC
T ss_pred             CCCCCC-CCCCCCEeecCCCCeeEECCCCccCccccccC
Confidence            356666 99999999999999999999999999999753

>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A

Probab=96.78  E-value=0.00066  Score=48.78  Aligned_cols=32  Identities=31%  Similarity=0.740  Sum_probs=27.5

Q ss_pred             CCCCCCCeee--cCCCCeEEeCCCCcccCccccc
Q psy9228         183 PGACGDGSCQ--DVDGAMKCLCPIGTAGKRCEQK  214 (834)
Q Consensus       183 ~~~C~~g~C~--~~~~~~~C~C~~g~~G~~Ce~~  214 (834)
                      .+.|.||+|.  ...+.+.|.|+.||+|.+||..
T Consensus        13 ~~yC~nG~C~~~~~~~~~~C~C~~gy~G~RCe~~   46 (50)
T 1iox_A           13 KHYCIKGRCRFVVAEQTPSCVCDEGYIGARCERV   46 (50)
T ss_dssp             TTSCTTCCEEEETTTTEEEECCCTTEETTTTCEE
T ss_pred             cCcccCCEEEeEcCCCCeEEECCCCcccCCCCee
Confidence            3789999996  4557899999999999999975

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=96.77  E-value=0.0013  Score=56.44  Aligned_cols=41  Identities=22%  Similarity=0.295  Sum_probs=32.4

Q ss_pred             cEEEEecCC-CCCcccc---CC---CeEEEcccCCCCCeeEEEEEcCC
Q psy9228           3 YIKWSRADG-LPLQRYA---EG---NVLRITNARLQDSGKYKCEIQGH   43 (834)
Q Consensus         3 ~~~w~~~~~-~~~~~~~---~~---~~l~~~~~~~~d~g~y~c~~~~~   43 (834)
                      .|.|.|.+. |....+.   .+   ..|+|.+|+.+|+|.|.|.+.|.
T Consensus        38 ~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~   85 (106)
T 2dlt_A           38 TGKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGY   85 (106)
T ss_dssp             EEEEEESSCBCCCCSSCEEEEETTEEEEEESSCCTTTCSCEEEEEETS
T ss_pred             ceEEEcCCEECcCCCCEEEEEeCCEEEEEECCCCcCCCEEEEEEEccC
Confidence            489999666 6554333   12   38999999999999999999876

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.74  E-value=0.00084  Score=56.40  Aligned_cols=40  Identities=30%  Similarity=0.536  Sum_probs=32.8

Q ss_pred             CcEEEEecCC-CCCccccCCCeEEEcccCCCCCeeEEEEEcCCC
Q psy9228           2 AYIKWSRADG-LPLQRYAEGNVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~~~~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      ++|.|.|.+. |+..   .+..|.|.+|+.+|+|.|.|.+.|..
T Consensus        40 ~~v~W~k~~~~~~~~---~~~~L~i~~v~~~d~G~Y~C~a~n~~   80 (96)
T 2ens_A           40 PQIHWMKDGVPLPLP---PSPVLILPEIGPQDQGTYSCVATHSS   80 (96)
T ss_dssp             CCCCCEESSSBCSSC---CCSEEEEESCCTTTCEEEECEECCSS
T ss_pred             CEEEEEECCEECcCC---CCCEEEECCCCcccCEEEEEEEEeCC
Confidence            3789999555 6543   46799999999999999999998854

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=96.73  E-value=0.001  Score=56.01  Aligned_cols=44  Identities=18%  Similarity=0.406  Sum_probs=34.0

Q ss_pred             CcEEEEecCC-CCCcccc----CCC--eEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA----EGN--VLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~----~~~--~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .+|.|.|.+. |+...+.    .++  .|.|.+++.+|+|.|.|.+.|..+
T Consensus        36 p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g   86 (99)
T 3puc_A           36 PTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAG   86 (99)
T ss_dssp             CEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTE
T ss_pred             CEEEEEECCEECcCCCCEEEEEeCCEEEEEECCCCcccCEEEEEEEEeCCC
Confidence            4799999655 7654333    122  799999999999999999987765

>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*

Probab=96.73  E-value=0.00075  Score=62.64  Aligned_cols=30  Identities=37%  Similarity=0.969  Sum_probs=25.5

Q ss_pred             CCCCCCCCEeccCCCCCceEeeCCCCCCCCCCCCC
Q psy9228         143 HNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVL  177 (834)
Q Consensus       143 ~~pC~n~g~C~~~~~~~~~~C~C~~g~~G~~Ce~~  177 (834)
                      ..+|.|||.|+.     -.+|.|++||+|.+||..
T Consensus       152 ~~~C~ngG~Cv~-----P~~C~C~~Gw~G~~C~~~  181 (188)
T 2ygo_A          152 PGGCRNGGFCNE-----RRICECPDGFHGPHCEGT  181 (188)
T ss_dssp             TTCCCTTCEECT-----TSCEECCTTCBTTTTCBC
T ss_pred             CCCCCCCCEeCC-----CCcccCcCCCCCCCCcCC
Confidence            479999999995     258999999999999753

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=96.72  E-value=0.00055  Score=58.91  Aligned_cols=44  Identities=16%  Similarity=0.381  Sum_probs=35.2

Q ss_pred             CcEEEEecCC-CCCcccc------CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA------EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~------~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .+|.|.|.+. |+...+.      .+..|.|.+|+.+|+|.|.|.+.|..+
T Consensus        44 p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G   94 (106)
T 1nct_A           44 PTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEG   94 (106)
T ss_dssp             CBCCBCSSSSCCTTCSSEEEEECSSEEEEEECCCCSSCCSEEEECCBCSSC
T ss_pred             CEEEEEECCEECCCCCCEEEEECCCEEEEEECcCCchhCEEEEEEEEeCCC
Confidence            4789999666 6654333      246899999999999999999988766

>4dqa_A Uncharacterized protein; two domains structure, DUF 1735, laminin_G_3 concanavalin A- lectin/glucanases superfamily domain; HET: MSE; 1.50A {Bacteroides ovatus}

Probab=96.72  E-value=0.022  Score=60.30  Aligned_cols=126  Identities=18%  Similarity=0.177  Sum_probs=82.2

Q ss_pred             ceeEEEEEEEeeCCCC--eeEEEeccCCccccCCCCCeEEEEEE--------CcEEEEEEecccEEEEeeeeecCCCeEE
Q psy9228         404 HLHFSIELSFKPTDYN--GLIMYTGDSNMKSYKGKGDFVSFGLE--------DGYPVFRFDVGLVVLRSKVTLVPHEWVV  473 (834)
Q Consensus       404 ~~~~~i~~~frt~~~~--GlLl~~~~~~~~~~~~~~d~~~l~L~--------~G~l~~~~~~G~~~i~s~~~~~dg~wH~  473 (834)
                      ...|+++.+||...-.  --||  +         ..+.+.+.+.        .+++++..  + ..+.+...+.+|+||+
T Consensus       160 ~~~~T~eawv~~~~~~~~~ti~--g---------~e~~~~lr~gd~~~g~~~~~~Lq~~~--~-~~~~s~~~l~~g~W~H  225 (355)
T 4dqa_A          160 FSSFTYEALINVDYFLDNNTIM--G---------TEGVMILRIGDAGGGITPKDYLEVAG--G-QNYRVTKPLLTNRWYH  225 (355)
T ss_dssp             BSSEEEEEEEEESCCCSSEEEE--E---------ETTTEEEEEEEGGGTSEEEEEEEEEE--S-SCEECSSCCCSSCEEE
T ss_pred             CCcEEEEEEEECCcCCCcceEE--e---------CCCeEEEEEecCCCCCCcCCeEEEec--C-CccccCCcccCCCEEE
Confidence            4579999999987642  3332  1         1234455553        33444432  2 3455667899999999


Q ss_pred             EEEEEE--CCeEEEEECCeeeeeeecCCCccccccCCCceeeccccCCCcccCcCcccccCceeEEeeeEEcCeeeeecc
Q psy9228         474 VTIIKD--FKEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLIN  551 (834)
Q Consensus       474 V~v~~~--~~~~~l~VD~~~~~~~~~~g~~~~~l~~~~~l~iGG~~~~~~~~~~~~~~~~gF~GCi~~v~ing~~~~~~~  551 (834)
                      |.+.++  +..++|+|||........... ...+....+++||......       .....|.|-|.+++|-.+.+...+
T Consensus       226 vA~t~d~~~~~~~lYvNG~~~~~~~~~~~-~~~~~~~~~l~IG~~~~~~-------~~~~~f~G~IdevrIw~~aLs~~e  297 (355)
T 4dqa_A          226 VALTYDQPTGKTGIYVNGEKWAGSDWGID-GFDPNSDMGFYIGRIYGFK-------WGERPFHGKMSEVRVWSVARTENQ  297 (355)
T ss_dssp             EEEEEETTTTEEEEEETTEEEEEEECCCC-CBCTTSTTCEEESCCTTCT-------TCCCCCEEEEEEEEEESSCCCHHH
T ss_pred             EEEEEECCCCEEEEEECCEEEEEEecCCC-ccccCCCceEEECCCCCCC-------CCCcceeEEEEEEEEECCcCCHHH
Confidence            999999  789999999988766554322 1222224679999854310       013579999999999887665443

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=96.72  E-value=0.00089  Score=57.00  Aligned_cols=44  Identities=23%  Similarity=0.288  Sum_probs=34.2

Q ss_pred             CcEEEEecCC-CCCcccc----C--CCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA----E--GNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~----~--~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|.|.|.+. |....+.    .  ...|+|.+++.+|+|.|.|.+.|..+
T Consensus        38 p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G   88 (103)
T 3qp3_A           38 AEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKG   88 (103)
T ss_dssp             CEEEEEETTEECCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTE
T ss_pred             CEEEEEECCEECCCCCCEEEEECCCEEEEEEcCCCcccCEEEEEEEEeCCC
Confidence            4799999666 6654332    1  23799999999999999999988765

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.70  E-value=0.0011  Score=56.50  Aligned_cols=41  Identities=29%  Similarity=0.648  Sum_probs=31.8

Q ss_pred             CcEEEEecCC-CCCcccc----CCC--eEEEcccCCCCCeeEEEEEcC
Q psy9228           2 AYIKWSRADG-LPLQRYA----EGN--VLRITNARLQDSGKYKCEIQG   42 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~----~~~--~l~~~~~~~~d~g~y~c~~~~   42 (834)
                      ++|.|.|.+. |....+.    .+.  .|+|.+|+.+|+|.|.|.+.|
T Consensus        37 ~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   84 (103)
T 2edf_A           37 TPVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEA   84 (103)
T ss_dssp             CCCCEEESSCBCCCSSSEEEEEETTEEEEEESSCCTTTCSEEEEECSS
T ss_pred             CcEEEEECCEEccCCCCEEEEECCCEEEEEECCCCcccCEEEEEEEcc
Confidence            4789999666 6554333    222  799999999999999999976

>2uur_A Collagen alpha-1(IX) chain; glycoprotein, hydroxylation, structural protein, NC4, collagen IX, polymorphism, extracellular matrix; 1.8A {Homo sapiens}

Probab=96.69  E-value=0.024  Score=56.50  Aligned_cols=122  Identities=13%  Similarity=0.050  Sum_probs=78.9

Q ss_pred             eeEEEEEEEe-eCCCC---eeEEEeccCCccccCCCCCeEEEEEECc--EEEEEEec--cc-EEEEeee--eecCCCeEE
Q psy9228         405 LHFSIELSFK-PTDYN---GLIMYTGDSNMKSYKGKGDFVSFGLEDG--YPVFRFDV--GL-VVLRSKV--TLVPHEWVV  473 (834)
Q Consensus       405 ~~~~i~~~fr-t~~~~---GlLl~~~~~~~~~~~~~~d~~~l~L~~G--~l~~~~~~--G~-~~i~s~~--~~~dg~wH~  473 (834)
                      .+|+|.+.|| .....   ..||-..+.      ....++.|.|..+  .+.+.+..  |. ..+.-..  ++.||+||+
T Consensus        86 ~eFsil~tlr~~~~~~~~~~~L~sI~d~------~~~~qlgv~l~g~~~~l~~~y~~~~g~~q~v~F~~~~~L~Dg~WHk  159 (245)
T 2uur_A           86 EEYSFLTTFRMTGSTLKKNWNIWQIQDS------SGKEQVGIKINGQTQSVVFSYKGLDGSLQTAAFSNLSSLFDSQWHK  159 (245)
T ss_dssp             SSEEEEEEEECCGGGGGCEEEEEEEECT------TSCEEEEEEEEGGGTEEEEEEEBTTSCEEEEEECCCGGGCSSSCEE
T ss_pred             CCEEEEEEEEcCCCCCCcceEEEEEECC------CCcEEEEEEEcCCCCEEEEEecCCCCCeeEEEecCCccccCCCEEE
Confidence            4688888888 34333   335544332      2456788888755  45555532  32 2222223  589999999


Q ss_pred             EEEEEECCeEEEEECCeeeeeeecCCCccccccCCCceeeccccCCCcccCcCcccccCceeEEeeeEEc
Q psy9228         474 VTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVL  543 (834)
Q Consensus       474 V~v~~~~~~~~l~VD~~~~~~~~~~g~~~~~l~~~~~l~iGG~~~~~~~~~~~~~~~~gF~GCi~~v~in  543 (834)
                      |.+...+..++|.||-......... . ...++.++.++||-.....         ...|.|-|+++.|-
T Consensus       160 lalsV~~~~VtLyvDC~~~~~~~l~-~-~~~i~~~G~~~lG~~~~~~---------~~~f~g~lQ~l~i~  218 (245)
T 2uur_A          160 IMIGVERSSATLFVDCNRIESLPIK-P-RGPIDIDGFAVLGKLADNP---------QVSVPFELQWMLIH  218 (245)
T ss_dssp             EEEEEETTEEEEEETTEEEEEEECC-C-BCCCCCSSEEEEEEESSCT---------TCBCCEEEEEEEEE
T ss_pred             EEEEEECCEEEEEEecCcccccccC-C-CCccccCCEEEEEEecCCC---------CCceEEEeEEEEEE
Confidence            9999999999999998876654332 2 2445667778888653211         12699999999884

>1a8d_A Tetanus neurotoxin; clostridial, ganglioside binding region; 1.57A {Clostridium tetani} SCOP: b.29.1.6 b.42.4.2 PDB: 1af9_A 1fv3_A* 1fv2_A* 3hmy_A* 3hn1_A* 1d0h_A* 1dfq_A* 1dll_A* 1yxw_A* 1yyn_A* 1diw_A*

Probab=96.67  E-value=0.11  Score=54.68  Aligned_cols=149  Identities=16%  Similarity=0.115  Sum_probs=89.1

Q ss_pred             eeeEEcCC--ce--eeechhhh-hhccCcceEEEEEEeCCCC---------e--eEEecC-CCCCCCCCCcceEEEEEEC
Q psy9228         652 SEVHFLGE--GY--VELKKELI-EERRNEETIAFDFVTDDKN---------A--LLLWNG-QPSYKNGIGREFIAVAVVN  714 (834)
Q Consensus       652 ~~~~F~g~--s~--~~~~~~~~-~~~~~~~~i~~~frT~~~~---------G--lLl~~~-~~~~~~~~~~~~~~l~l~~  714 (834)
                      .++.+.+.  |.  +..+...+ ......++|+||||+...+         |  .|+-.- ...  .+ ..--..++|.+
T Consensus        58 kA~~l~~~~~s~~~V~~~n~ii~N~~t~dFSISFWvK~~k~~~~~i~~~~~~e~TIin~k~~n~--~s-~nsGW~I~l~g  134 (452)
T 1a8d_A           58 KAIHLVNNESSEVIVHKAMDIEYNDMFNNFTVSFWLRVPKVSASHLEQYGTNEYSIISSMKKHS--LS-IGSGWSVSLKG  134 (452)
T ss_dssp             EEEEEESSTTCCEEEECCGGGTTTTTTSCEEEEEEEECCCCCHHHHHHHTTCEEEEEECCEECG--GG-CEEEEEEEEET
T ss_pred             ceEEeccCCCcceEEecCchHhhccCCCceEEEEEEECCCcCcccccccccCcceEEeeecccc--cc-CCCCeEEEeCC
Confidence            46667763  23  23332221 1223689999999997752         2  444221 100  00 01235678888


Q ss_pred             CEEEEEEEcCCc-EE--EEEeCCceec---CCCcEEEEEEEE-CCEEEEEEcCeeeecccCCCCccceecCCceEEc--C
Q psy9228         715 GYLEYSYDLGDG-VV--TIKFSKKPVN---DGIKHSVNVTRI-NKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLG--G  785 (834)
Q Consensus       715 G~l~~~~~~g~~-~~--~l~~s~~~~n---Dg~wH~V~i~r~-~~~~~l~VD~~~~~~~~~~~~~~~l~~~~~lyiG--G  785 (834)
                      +.+.+.+..-.+ ..  .+.-....+.   ||+||+|+|+.. .+..+++|||..+.+.... ....+.....+-||  +
T Consensus       135 n~liw~l~Dsng~~~~i~f~~~~~~Isd~~~nkW~fVtItvDR~g~~~IYING~Lv~s~~It-~lG~I~ss~~i~~gi~~  213 (452)
T 1a8d_A          135 NNLIWTLKDSAGEVRQITFRDLPDKFNAYLANKWVFITITNDRLSSANLYINGVLMGSAEIT-GLGAIREDNNITLKLDR  213 (452)
T ss_dssp             TEEEEEEECTTSCEEEEEEECCSBTTSCSSSSSCEEEEEEECTTSEEEEEETTEEEEEEECT-TCCCCCCCSEEEEEEES
T ss_pred             CeEEEEEEcCCCceeeEEeccccccCccccCCeEEEEEEEECCCCCEEEEECCEEeeccchh-hccceeecCeEEEEEcc
Confidence            899998876433 22  2321234455   699999999998 4677999999988766433 22234444455555  5


Q ss_pred             cCCCCCCCCCccCCCceEEEEEEEECCce
Q psy9228         786 TPNMDLMTGGRYVHPMSGLMMNIHIQNKH  814 (834)
Q Consensus       786 ~p~~~~~~~~~~~~~F~GCi~~v~in~~~  814 (834)
                      .++          .++.|.|++|+|-.+.
T Consensus       214 ~~d----------~~~~~~IDef~Iynk~  232 (452)
T 1a8d_A          214 CNN----------NNQYVSIDKFRIFCKA  232 (452)
T ss_dssp             CCC----------TTCEEEEEEEEEESSC
T ss_pred             cCC----------CcccceEeeEEEeccc
Confidence            443          3577899999997764

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.64  E-value=0.001  Score=57.41  Aligned_cols=44  Identities=18%  Similarity=0.327  Sum_probs=34.2

Q ss_pred             CcEEEEecCC-CCCcccc-----CC--CeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA-----EG--NVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~-----~~--~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|.|.|.+. |......     .+  ..|+|.+|+.+|+|.|.|.+.|..+
T Consensus        39 p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g   90 (110)
T 2dm3_A           39 PDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAG   90 (110)
T ss_dssp             CEEECBBSSSBCCCCSSEEEEECTTSCEEEEESSCCGGGCSBBCEEEECSSC
T ss_pred             CEEEEEECCEECCCCCceEEEEecCCeEEEEEeeCCcccCEEEEEEEECCCC
Confidence            4799999666 6543321     22  3899999999999999999988765

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=96.64  E-value=0.0015  Score=55.98  Aligned_cols=41  Identities=24%  Similarity=0.519  Sum_probs=31.8

Q ss_pred             CcEEEEecCC-CCCc-ccc---CCC---eEEEcccCCCCCeeEEEEEcC
Q psy9228           2 AYIKWSRADG-LPLQ-RYA---EGN---VLRITNARLQDSGKYKCEIQG   42 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~-~~~---~~~---~l~~~~~~~~d~g~y~c~~~~   42 (834)
                      ++|.|.|.+. |+.. .+.   .++   .|+|.+|+.+|+|.|.|.+.+
T Consensus        45 ~~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~   93 (104)
T 1pd6_A           45 AEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGG   93 (104)
T ss_dssp             SCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEETT
T ss_pred             CEEEEEECCEECCCCCCeEEEEecCCEEEEEECCCCcccCEEEEEEECC
Confidence            4789999766 6654 222   234   899999999999999999943

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=96.64  E-value=0.0012  Score=56.77  Aligned_cols=41  Identities=22%  Similarity=0.428  Sum_probs=31.6

Q ss_pred             CcEEEEecCC-CCCcccc---CCC---eEEEcccCCCCCeeEEEEEcC
Q psy9228           2 AYIKWSRADG-LPLQRYA---EGN---VLRITNARLQDSGKYKCEIQG   42 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~---~~~---~l~~~~~~~~d~g~y~c~~~~   42 (834)
                      +.|+|.|.+. |....+.   .++   .|+|.+|+.+|+|.|.|.+.+
T Consensus        36 p~v~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   83 (108)
T 2dm7_A           36 APVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVADAGEYSCMCGQ   83 (108)
T ss_dssp             CCCEEESSSSBCCSSSSCEEEEETTEEEEEESSCCTTTCSEEEEEETT
T ss_pred             CeeEEEECCEECCCCCCEEEEecCCEEEEEECCCCcccCEEEEEEEcC
Confidence            4689999776 7654333   233   499999999999999999943

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=96.61  E-value=0.0012  Score=56.95  Aligned_cols=26  Identities=35%  Similarity=0.542  Sum_probs=23.7

Q ss_pred             CCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228          20 GNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus        20 ~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ...|+|.+|+.+|+|.|.|.+.|..+
T Consensus        71 ~~~L~I~~v~~~D~G~Y~C~a~N~~G   96 (108)
T 3cx2_A           71 LFELHITDAQPAFTGSYRCEVSTKDK   96 (108)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEECSSC
T ss_pred             eEEEEEecCCCccCEEEEEEEecCCC
Confidence            35899999999999999999998876

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=96.61  E-value=0.0013  Score=56.15  Aligned_cols=41  Identities=24%  Similarity=0.374  Sum_probs=32.0

Q ss_pred             CcEEEEecCC-CCCcc----cc--C--CCeEEEcccCCCCCeeEEEEEcC
Q psy9228           2 AYIKWSRADG-LPLQR----YA--E--GNVLRITNARLQDSGKYKCEIQG   42 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~----~~--~--~~~l~~~~~~~~d~g~y~c~~~~   42 (834)
                      .+|+|.|.+. |....    .+  .  ...|+|.+|+.+|+|.|.|.+.|
T Consensus        36 ~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n   85 (103)
T 1x44_A           36 ANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG   85 (103)
T ss_dssp             CCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT
T ss_pred             CeEEEEECCEECCCCCceEEEEEEcCCEEEEEECCCCcccCEEEEEEECC
Confidence            4789999665 66544    22  1  25899999999999999999976

>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1

Probab=96.59  E-value=0.0014  Score=48.08  Aligned_cols=33  Identities=24%  Similarity=0.621  Sum_probs=26.8

Q ss_pred             cCccCCCCC---------CccCCCceeeecCCCcEEcCCCCCCC
Q psy9228         607 KENNMCMKG---------DVCKNGGMCKVTPDSYECLCSLGYAP  641 (834)
Q Consensus       607 ~~~~~C~~~---------~pC~ngg~C~~~~~~~~C~C~~g~~G  641 (834)
                      .++++|...         .||.  ++|++.+++|.|.|++||.+
T Consensus         2 ~DidEC~~~~~~~~~~~~~~C~--~~C~n~~Gsy~C~C~~Gy~~   43 (53)
T 1apq_A            2 VDLDECASRSKSGEEDPQPQCQ--HLCHNYVGGYFCSCRPGYEL   43 (53)
T ss_dssp             CSCCTTTCSTTTCCCSSSCTTS--SEEEEETTEEEEECSTTCEE
T ss_pred             CccccccCcccccccccCCCCC--CEeECCCCCeEEECCCCCeE
Confidence            356788752         3897  49999999999999999974

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.59  E-value=0.0015  Score=57.21  Aligned_cols=26  Identities=31%  Similarity=0.484  Sum_probs=23.8

Q ss_pred             CCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228          20 GNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus        20 ~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      +..|+|.+|+.+|+|.|.|.+.+..+
T Consensus        79 ~~~L~I~~v~~~D~G~Y~Cevsn~~g  104 (118)
T 2edn_A           79 TVELHIGKVVLGDRGYYRLEVKAKDT  104 (118)
T ss_dssp             EEEEEESSCCTTTCSCEEEEEECSSC
T ss_pred             eEEEEEeeCChhhCEEEEEEEEEcCC
Confidence            46899999999999999999998876

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.57  E-value=0.0025  Score=54.95  Aligned_cols=44  Identities=18%  Similarity=0.277  Sum_probs=33.7

Q ss_pred             CcEEEEecCC-CCCc-ccc-----CCC--eEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQ-RYA-----EGN--VLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~-~~~-----~~~--~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .+|.|.|.+. |... .+.     .++  .|+|.+|+.+|+|.|.|.+.|..+
T Consensus        38 p~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g   90 (110)
T 2dm2_A           38 PKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQG   90 (110)
T ss_dssp             CEEEEECSSCBCCTTCSSEEEEECTTCEEEEEESSCCTTTCSCCEEEEECTTC
T ss_pred             CEEEEEECCEECCCCCCeEEEEECCCcEEEEEECCCChhhCEEEEEEEEECCC
Confidence            4799999666 6542 111     133  699999999999999999988765

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.56  E-value=0.0017  Score=56.40  Aligned_cols=41  Identities=29%  Similarity=0.573  Sum_probs=32.2

Q ss_pred             CcEEEEecCC-CCCcccc----CC--CeEEEcccCCCCCeeEEEEEcC
Q psy9228           2 AYIKWSRADG-LPLQRYA----EG--NVLRITNARLQDSGKYKCEIQG   42 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~----~~--~~l~~~~~~~~d~g~y~c~~~~   42 (834)
                      ..|.|.|.+. |....+.    .+  ..|+|.+++.+|+|.|.|.+.|
T Consensus        42 ~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   89 (113)
T 2cpc_A           42 AEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDD   89 (113)
T ss_dssp             CCCEEEETTEECCCBTTBEEEECSSEEEEEESSCCTTTCEEEEEESSS
T ss_pred             CeEEEEECCEECccCCCEEEEECCCEEEEEECCCCcccCEEEEEEEec
Confidence            4789999555 6654333    22  5899999999999999999976

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=96.56  E-value=0.0016  Score=57.34  Aligned_cols=44  Identities=16%  Similarity=0.224  Sum_probs=33.4

Q ss_pred             CcEEEEecCC-CCCc-----cc---------cCCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQ-----RY---------AEGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~-----~~---------~~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .+|.|.|.++ +...     ..         .....|+|.+|+.+|+|.|.|.+.|..+
T Consensus        40 ~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g   98 (122)
T 3s35_X           40 IDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLM   98 (122)
T ss_dssp             CEEEEECSCTTCCHHHHBCCSCCEEEETTEEEEEEEEEESSCCGGGCEEEEEEEECSSC
T ss_pred             EEEEEECCCcccCCceeeeeccccccCCceeeEEEEEEECCCCcccCEEEEEEEccCCC
Confidence            4789999776 5421     11         1235799999999999999999988765

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.55  E-value=0.00097  Score=57.10  Aligned_cols=40  Identities=18%  Similarity=0.325  Sum_probs=30.9

Q ss_pred             cEEEEecCC-CCCcccc----CC--CeEEEcccCCCCCeeEEEEEcC
Q psy9228           3 YIKWSRADG-LPLQRYA----EG--NVLRITNARLQDSGKYKCEIQG   42 (834)
Q Consensus         3 ~~~w~~~~~-~~~~~~~----~~--~~l~~~~~~~~d~g~y~c~~~~   42 (834)
                      .+.|.|.+. |....+.    ++  ..|+|.+|+.+|+|.|.|.+.+
T Consensus        40 ~v~W~k~g~~i~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~   86 (104)
T 2eny_A           40 PAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSVRG   86 (104)
T ss_dssp             CBCCBSSSSBCSBCSSCEEEEETTEEEEEECSCCTTTCSCEEEEETT
T ss_pred             eeEEEECCEECCCCCCEEEEEcCCEEEEEECCCCHHHCEEEEEEECC
Confidence            589999666 7654433    22  3799999999999999999854

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=96.54  E-value=0.0018  Score=56.18  Aligned_cols=39  Identities=23%  Similarity=0.407  Sum_probs=31.0

Q ss_pred             CcEEEEecCC-CCCcccc---CCC---eEEEcccCCCCCeeEEEEE
Q psy9228           2 AYIKWSRADG-LPLQRYA---EGN---VLRITNARLQDSGKYKCEI   40 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~---~~~---~l~~~~~~~~d~g~y~c~~   40 (834)
                      +.|+|.|.+. |+...+.   .++   .|+|.+|+.+|+|.|.|.+
T Consensus        47 p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   92 (113)
T 2edh_A           47 APVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMC   92 (113)
T ss_dssp             CCCEEEESSSBCCCSSSEEEEEETTEEEEEECSCCSTTCEEEEEEE
T ss_pred             CcEEEEECCEECCCCCcEEEEECCCEEEEEECCCChhhCEEEEEEe
Confidence            4689999666 7654333   234   8999999999999999999

>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*

Probab=96.54  E-value=0.0013  Score=60.97  Aligned_cols=33  Identities=36%  Similarity=0.910  Sum_probs=28.3

Q ss_pred             CCCCCCCCCCCCeecccCCCCCceeeecCCCCCCCCCccC
Q psy9228         569 PVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKE  608 (834)
Q Consensus       569 ~~C~~~pC~ngg~C~~~~~~~~~~~C~C~~G~~G~~Ce~~  608 (834)
                      ..|. .+|+|||.|+.      --+|.|++||+|..|+..
T Consensus       149 ~~C~-~~C~ngG~Cv~------P~~C~C~~Gw~G~~C~~~  181 (188)
T 2ygo_A          149 AECP-GGCRNGGFCNE------RRICECPDGFHGPHCEGT  181 (188)
T ss_dssp             CCCT-TCCCTTCEECT------TSCEECCTTCBTTTTCBC
T ss_pred             CccC-CCCCCCCEeCC------CCcccCcCCCCCCCCcCC
Confidence            5675 79999999986      457999999999999976

>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein, GPI-anchor, immunoglobulin DOMA lipoprotein, membrane; 1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A

Probab=96.52  E-value=0.0019  Score=55.93  Aligned_cols=27  Identities=26%  Similarity=0.279  Sum_probs=24.2

Q ss_pred             CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228          19 EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus        19 ~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .++.|+|.||+.+|+|.|.|.+.+..+
T Consensus        70 ~ngSL~I~nvt~~D~G~Ytc~v~~~~~   96 (111)
T 2qsq_A           70 PNASLLIQNIIQNDAGFYTLHVIKSDL   96 (111)
T ss_dssp             TTSCEEECSCCGGGCEEEEEEEEETTS
T ss_pred             cCCcEEEccCcccCCeEEEEEEEeCCC
Confidence            589999999999999999999987643

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=96.51  E-value=0.0018  Score=56.62  Aligned_cols=44  Identities=16%  Similarity=0.351  Sum_probs=33.6

Q ss_pred             CcEEEEecCC-CCCc-ccc----CC-C--eEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQ-RYA----EG-N--VLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~-~~~----~~-~--~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .+|.|.|.+. |... .+.    .+ +  .|+|.+|+.+|+|.|.|.+.|..+
T Consensus        45 p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G   97 (116)
T 2kkq_A           45 PKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAG   97 (116)
T ss_dssp             CEEEEEETTEECCCCBTTEEEEECTTCEEEEEEEEECGGGCEEEEEEEEETTE
T ss_pred             CEEEEEECCEECcCCCCeEEEEeCCCCeEEEEECCCCcccCEEEEEEEEcCCC
Confidence            4799999666 6642 222    22 2  899999999999999999987765

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=96.51  E-value=0.0014  Score=56.34  Aligned_cols=44  Identities=23%  Similarity=0.486  Sum_probs=34.7

Q ss_pred             CcEEEEecCC-CCCcc-----cc--C-------CCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQR-----YA--E-------GNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~-----~~--~-------~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .+|.|.|.+. |+...     +.  .       +..|.|.+|+.+|+|.|.|.+.|..+
T Consensus        42 ~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g  100 (112)
T 3so5_A           42 MTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFG  100 (112)
T ss_dssp             CEEEEEETTEECTTCEEEEEEETTGGGSSCEEEEEEEEECSCCGGGCEEEEEEEEETTE
T ss_pred             EEEEEccCCcccccccccceeeeeccCCCccccceEEEEeccccccCCeEEEEEEeCCC
Confidence            4799999666 76542     11  1       36899999999999999999988765

>4b1m_A Levanase; hydrolase, CBM66; HET: FRU; 1.10A {Bacillus subtilis} PDB: 4b1l_A* 4azz_A

Probab=96.47  E-value=0.026  Score=53.74  Aligned_cols=87  Identities=14%  Similarity=0.092  Sum_probs=60.8

Q ss_pred             CcceEEEEEEeCC-----CCeeEEecCCCCCCCCCCcceEEEEEEC--CEEEEEEEcCCcEEEEEeCCceecCCCcEEEE
Q psy9228         674 NEETIAFDFVTDD-----KNALLLWNGQPSYKNGIGREFIAVAVVN--GYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVN  746 (834)
Q Consensus       674 ~~~~i~~~frT~~-----~~GlLl~~~~~~~~~~~~~~~~~l~l~~--G~l~~~~~~g~~~~~l~~s~~~~nDg~wH~V~  746 (834)
                      ..+.++++||...     ..||+|.....      ...+..+.|..  +.+.+.-..++....|...+..+..|+||+++
T Consensus        64 ~Df~le~dvk~~~~~~~g~~Gi~fR~~~d------~~~gY~~~i~~~~~~~~l~k~~~g~~~~L~~~~~~~~~g~w~~l~  137 (185)
T 4b1m_A           64 SDFTYESDITIKDGNGRGAGALMFRSDKD------AKNGYLANVDAKHDLVKFFKFENGAASVIAEYKTPIDVNKKYHLK  137 (185)
T ss_dssp             SSEEEEEEEEEEEEEEEEEEEEEEEECTT------SSSEEEEEEETTTTEEEEEEEETTEEEEEEEEECCCCSSCCEEEE
T ss_pred             cCEEEEEEEEEcCCCCcceEEEEEEEcCC------CCCcEEEEEECCCCEEEEEEEeCCcEEEeeeccccCCCCCeEEEE
Confidence            5677888888754     34788877322      14677788874  57766543344344454234578899999999


Q ss_pred             EEEECCEEEEEEcCeeeecc
Q psy9228         747 VTRINKFGSLEVDSVIVGKG  766 (834)
Q Consensus       747 i~r~~~~~~l~VD~~~~~~~  766 (834)
                      |...+..++++|||..+...
T Consensus       138 I~~~G~~i~~~vnG~~v~~~  157 (185)
T 4b1m_A          138 TEAEGDRFKIYLDDRLVIDA  157 (185)
T ss_dssp             EEEETTEEEEEETTEEEEEE
T ss_pred             EEEECCEEEEEECCEEEEEE
Confidence            99999999999999876544

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.45  E-value=0.0019  Score=54.79  Aligned_cols=41  Identities=24%  Similarity=0.512  Sum_probs=31.7

Q ss_pred             CcEEEEecCC-CCCcccc----CC--CeEEEcccCCCCCeeEEEEEcC
Q psy9228           2 AYIKWSRADG-LPLQRYA----EG--NVLRITNARLQDSGKYKCEIQG   42 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~----~~--~~l~~~~~~~~d~g~y~c~~~~   42 (834)
                      ..|.|.|.+. |....+.    .+  ..|+|.+++.+|+|.|.|.+.+
T Consensus        40 ~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~   87 (102)
T 2eo1_A           40 TEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGG   87 (102)
T ss_dssp             SCCEEEETTEECCCCSSEEEEEETTEEEEEETTCCTTTCSCEEEEETT
T ss_pred             CceEEEECCEECCCCCCEEEEEcCCEEEEEECCCCcccCEEEEEEcCC
Confidence            4789999655 7654333    22  4899999999999999999954

>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein, membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A {Homo sapiens}

Probab=96.43  E-value=0.0013  Score=61.65  Aligned_cols=31  Identities=32%  Similarity=0.827  Sum_probs=16.8

Q ss_pred             CCCCCCCCEeccCCCCCceEeeCCCCCCCCCCC
Q psy9228         143 HNNCINNGLCQDAATRIGYTCICPPGFSGDRCS  175 (834)
Q Consensus       143 ~~pC~n~g~C~~~~~~~~~~C~C~~g~~G~~Ce  175 (834)
                      .++|.++|+|.+..  .+|+|.|++||.|.+||
T Consensus       124 ~~~C~~~g~C~~~~--~~~~c~C~~g~~g~~C~  154 (164)
T 3cfw_A          124 PWSCSGHGECVEII--NNYTCNCDVGYYGPQCQ  154 (164)
T ss_dssp             TTSSCSSEEEEEET--TEEEEEECTTCBSSSSC
T ss_pred             CCcCCCCCeecccC--CCceeeeCCCccccccc
Confidence            45555555555543  45555555555555554

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=96.43  E-value=0.002  Score=53.95  Aligned_cols=39  Identities=21%  Similarity=0.456  Sum_probs=30.2

Q ss_pred             CcEEEEecCC-CCCcccc----CC--CeEEEcccCCCCCeeEEEEE
Q psy9228           2 AYIKWSRADG-LPLQRYA----EG--NVLRITNARLQDSGKYKCEI   40 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~----~~--~~l~~~~~~~~d~g~y~c~~   40 (834)
                      ..|.|.|.+. |....+.    .+  ..|+|.+|+.+|+|.|.|.+
T Consensus        37 ~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   82 (95)
T 2k1m_A           37 VKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSYAVIA   82 (95)
T ss_dssp             CCCEEECSSSEECSSTTCEEEEETTEEEEEESSCCTTCCSEEEEEE
T ss_pred             CeEEEEECCEECCCCCcEEEEEcCCEEEEEEcCCCcccCEEEEEEE
Confidence            4789999666 6543332    22  37999999999999999999

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=96.34  E-value=0.0024  Score=61.20  Aligned_cols=41  Identities=24%  Similarity=0.581  Sum_probs=33.8

Q ss_pred             CcEEEEecCC-CCCccccCCCeEEEcc-cCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYAEGNVLRITN-ARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~~~~~l~~~~-~~~~d~g~y~c~~~~~~~   45 (834)
                      ..|+|.|.+. |+..   .++.|+|.+ ++.+|+|.|+|.+.|..+
T Consensus        27 ~~i~W~k~g~~l~~~---~~~~L~I~~~~~~~D~G~Y~C~a~n~~g   69 (186)
T 1jbj_A           27 ENLKWEKNGQELPQK---HDKHLVLQDFSEVEDSGYYVCYTPASNK   69 (186)
T ss_dssp             TTCEEEETTEEECSC---CCSEEEEESCCTTTSCEEEEEECSSCCC
T ss_pred             CceEEEECCEECCCC---CCCEEEECCCCccccCEEEEEEEEeCCC
Confidence            3589999655 7654   456899999 999999999999987665

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.32  E-value=0.0025  Score=54.33  Aligned_cols=40  Identities=23%  Similarity=0.546  Sum_probs=31.3

Q ss_pred             EEEEecCC-CCCcccc----C--CCeEEEcccCCCCCeeEEEEEcCC
Q psy9228           4 IKWSRADG-LPLQRYA----E--GNVLRITNARLQDSGKYKCEIQGH   43 (834)
Q Consensus         4 ~~w~~~~~-~~~~~~~----~--~~~l~~~~~~~~d~g~y~c~~~~~   43 (834)
                      |.|.|.+. |....+.    .  ...|+|.+++.+|+|.|.|.+.|.
T Consensus        41 v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~   87 (104)
T 2e6p_A           41 ATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFECRTEGV   87 (104)
T ss_dssp             CEEEETTEECCCBTTBEEEEETTEEEEEESSCCTTTCEEEEEECSSC
T ss_pred             cEEeeCCEECCCCCCEEEEeCCCEEEEEECCCChhhCEEEEEEECCc
Confidence            89999665 6654333    1  247999999999999999999765

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=96.30  E-value=0.0032  Score=53.20  Aligned_cols=39  Identities=21%  Similarity=0.413  Sum_probs=30.4

Q ss_pred             CcEEEEecCC-CCCcccc----CC--CeEEEcccCCCCCeeEEEEE
Q psy9228           2 AYIKWSRADG-LPLQRYA----EG--NVLRITNARLQDSGKYKCEI   40 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~----~~--~~l~~~~~~~~d~g~y~c~~   40 (834)
                      ..|.|.|.+. |....+.    .+  ..|+|.+++.+|+|.|.|.+
T Consensus        37 ~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a   82 (100)
T 2yuv_A           37 LEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTA   82 (100)
T ss_dssp             SCEEEEESSCBCCCBTTEEEEEETTEEEEEEEEECTTTCCEEEEEE
T ss_pred             ceEEEEECCEECCCCCCEEEEecCCEEEEEEcCCCcCcCEEEEEEE
Confidence            4799999666 6553332    22  36999999999999999999

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.28  E-value=0.0028  Score=53.82  Aligned_cols=38  Identities=24%  Similarity=0.397  Sum_probs=30.2

Q ss_pred             CcEEEEecCC-CCCcccc---CCC---eEEEcccCCCCCeeEEEE
Q psy9228           2 AYIKWSRADG-LPLQRYA---EGN---VLRITNARLQDSGKYKCE   39 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~---~~~---~l~~~~~~~~d~g~y~c~   39 (834)
                      ++|+|.|.+. |....+.   .++   .|+|.+|+.+|+|.|.|.
T Consensus        37 ~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   81 (103)
T 2dku_A           37 ATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEKADSDTYTCD   81 (103)
T ss_dssp             SCCEEEESSCBCCSSSSEEEEEETTEEEEEEESCCTTTCSEEEEE
T ss_pred             CeEEEEeCCEECCCCCeEEEEeCCCEEEEEECCCCcccCEEEEEE
Confidence            4789999776 7654333   234   899999999999999998

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=96.28  E-value=0.002  Score=57.03  Aligned_cols=26  Identities=27%  Similarity=0.492  Sum_probs=23.6

Q ss_pred             CCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228          20 GNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus        20 ~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      +..|+|.+|+.+|+|.|.|.+.|..+
T Consensus        74 ~~~L~I~~v~~~DaG~Y~Cevsn~~g   99 (126)
T 2dav_A           74 TFEMQIIKAKDNFAGNYRCEVTYKDK   99 (126)
T ss_dssp             EEEEEECSCCTTSCEEEEEEEECSSC
T ss_pred             eEEEEEccCCcccCEEEEEEEEeCCC
Confidence            46899999999999999999988765

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.26  E-value=0.004  Score=53.96  Aligned_cols=39  Identities=18%  Similarity=0.127  Sum_probs=30.2

Q ss_pred             CcEEEEecCC-CCCcc----------cc---CCC---eEEEcccCCCCCeeEEE-EE
Q psy9228           2 AYIKWSRADG-LPLQR----------YA---EGN---VLRITNARLQDSGKYKC-EI   40 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~----------~~---~~~---~l~~~~~~~~d~g~y~c-~~   40 (834)
                      ++++|.|.+. |....          +.   .++   .|+|.+|+.+|+|.|+| .|
T Consensus        36 p~v~W~knG~~l~~~~~~~~~~~~~~r~~i~~~g~~~~L~I~~v~~~D~G~Y~~~~~   92 (112)
T 2e6q_A           36 IQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQDSGALVGFSC   92 (112)
T ss_dssp             CCCEEEESSCBCCSSCCCTTSCTTSCEEEECCBTTEEEEEEESCCSTTCSEEEEEEE
T ss_pred             CeEEEEECCEECccCcccccccccccEEEEEeCCcEEEEEECCCCHHHCccEEEEEE
Confidence            5789999666 76654          32   233   79999999999999976 66

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.23  E-value=0.0022  Score=54.40  Aligned_cols=42  Identities=21%  Similarity=0.457  Sum_probs=32.0

Q ss_pred             CcEEEEecCC-CCCcc------cc--CC--CeEEEcccCCCCCeeEEEEEcCC
Q psy9228           2 AYIKWSRADG-LPLQR------YA--EG--NVLRITNARLQDSGKYKCEIQGH   43 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~------~~--~~--~~l~~~~~~~~d~g~y~c~~~~~   43 (834)
                      .+|+|.|.+. |....      .+  .+  ..|+|.+++.+|+|.|.|.+.+.
T Consensus        37 ~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~   89 (101)
T 2edk_A           37 AQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVITNGG   89 (101)
T ss_dssp             CCCEEEESSCBCCCSCCSSCCCEEEECSSEEEEECSSCCGGGCSBEEEECSSC
T ss_pred             CEEEEEECCEECCCCCCcceeEEEEECCCEEEEEECCCChhhCEEEEEEEcCC
Confidence            4689999666 66543      12  22  36999999999999999999763

>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ...

Probab=96.23  E-value=0.0015  Score=48.35  Aligned_cols=34  Identities=24%  Similarity=0.778  Sum_probs=25.6

Q ss_pred             CCCCCCCEeccCCCCCceEeeCCCCCC----CCCCCCCCCCcc
Q psy9228         144 NNCINNGLCQDAATRIGYTCICPPGFS----GDRCSVLGEPCY  182 (834)
Q Consensus       144 ~pC~n~g~C~~~~~~~~~~C~C~~g~~----G~~Ce~~~~~C~  182 (834)
                      .+|.+  .|++.+  ++|+|.|++||.    |..| .++|+|.
T Consensus         9 ~~C~~--~C~nt~--Gsy~C~C~~Gy~L~~d~~~C-~didec~   46 (55)
T 2jkh_L            9 GDCDQ--FCHEEQ--NSVVCSCARGYTLADNGKAC-IPTGPYP   46 (55)
T ss_dssp             GGCSS--EEEEET--TEEEEECCTTEEECTTSSCE-EESSSSC
T ss_pred             CCcCc--EeEcCC--CCeEEeCCCCCEECCCCCee-ccCcccc
Confidence            46865  899887  899999999996    6677 4556653

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=96.17  E-value=0.0037  Score=57.82  Aligned_cols=44  Identities=23%  Similarity=0.345  Sum_probs=34.8

Q ss_pred             CcEEEEecCC-CCCcccc-----CC--CeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA-----EG--NVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~-----~~--~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .+|.|.|.+. |+...+.     .+  ..|+|.+|+.+|+|.|.|.+.|..+
T Consensus        71 p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G  122 (154)
T 1fhg_A           71 PEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLG  122 (154)
T ss_dssp             CEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CEEEEEECCEECCCCCcEEEEECCCCeEEEEECCCChhcCEEEEEEEEECCC
Confidence            4799999666 7664433     12  3899999999999999999988765

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=96.11  E-value=0.0032  Score=60.11  Aligned_cols=43  Identities=21%  Similarity=0.383  Sum_probs=33.4

Q ss_pred             cEEEEe--cCC-C----------CCcccc---CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           3 YIKWSR--ADG-L----------PLQRYA---EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         3 ~~~w~~--~~~-~----------~~~~~~---~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .|+|.|  .+. |          +...+.   .++.|+|.+|+.+|+|.|.|.+.+..+
T Consensus        32 ~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ngsL~I~~v~~~DsG~Y~c~~~n~~g   90 (182)
T 1hnf_A           32 DIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKG   90 (182)
T ss_dssp             EEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTSCEEECSCCGGGCEEEEEEEEETTS
T ss_pred             EEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCCCEEECCCChhhCEEEEEEEEeCCC
Confidence            789999  555 5          232222   578999999999999999999976654

>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A

Probab=96.08  E-value=0.0015  Score=65.38  Aligned_cols=38  Identities=21%  Similarity=0.642  Sum_probs=30.1

Q ss_pred             CCCCCcc--CCCCC-CCeeecCCCCeEEeCCCCcc--cCcccc
Q psy9228         176 VLGEPCY--PGACG-DGSCQDVDGAMKCLCPIGTA--GKRCEQ  213 (834)
Q Consensus       176 ~~~~~C~--~~~C~-~g~C~~~~~~~~C~C~~g~~--G~~Ce~  213 (834)
                      .++|||.  .++|. +++|+|..++|.|.|++||.  |..|..
T Consensus         3 ~DiDEC~~~~~~C~~~a~C~Nt~Gsy~C~C~~Gy~GnG~~C~d   45 (285)
T 1gl4_A            3 LAQQTCANNRHQCSVHAECRDYATGFCCRCVANYTGNGRQCVA   45 (285)
T ss_dssp             ----CHHHHGGGSCTTEEEEECSSCEEEEECTTEEECSSSEEE
T ss_pred             ccchhccCCCCCCCCCCEeEcCCCCeEEEcCCCCCCCCCcCCC
Confidence            4789998  58998 58999999999999999998  667864

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=96.04  E-value=0.0041  Score=61.30  Aligned_cols=43  Identities=14%  Similarity=0.099  Sum_probs=34.5

Q ss_pred             CcEEEEecCC-CCCccc--cCCCeEEEcccCCCCCeeEEEEEcCCC
Q psy9228           2 AYIKWSRADG-LPLQRY--AEGNVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~--~~~~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      .++.|.|++. ++....  ..++.|.|.+|+.+|+|.|.|.+.+..
T Consensus       135 ~~~~W~k~g~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  180 (218)
T 1uct_A          135 DRFSLAKEGELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYNR  180 (218)
T ss_dssp             SEEEEEETTCSSCCSEEECSSSEEEECCSCCGGGCEEEEEEEECTT
T ss_pred             CEEEEEECCCcccccccCCCccCEEEEccCCcccCEEEEEEEEcCC
Confidence            3689999776 765432  257899999999999999999998653

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=96.02  E-value=0.0054  Score=59.45  Aligned_cols=44  Identities=34%  Similarity=0.604  Sum_probs=36.3

Q ss_pred             CcEEEEecCC-CCCcccc----CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA----EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~----~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .+|.|.|.+. |+...+.    .+..|.|.+|+.+|+|.|.|.+.|..+
T Consensus       139 p~i~W~~~g~~l~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g  187 (208)
T 3r4d_A          139 ANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVS  187 (208)
T ss_dssp             CEEEEEETTEECCCCSSEEEETTTTEEEESSCCGGGCEEEEEEEECTTC
T ss_pred             CceEEEECCEeCCCCCCeEEcCCCCEEEEeccCHHhCeEEEEEEecCCC
Confidence            4799999655 7755443    458999999999999999999998876

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=96.01  E-value=0.0041  Score=56.11  Aligned_cols=26  Identities=19%  Similarity=0.488  Sum_probs=23.8

Q ss_pred             CCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228          20 GNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus        20 ~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++.|.|.+|+.+|+|.|.|.+.|..+
T Consensus        89 ~~~L~I~~v~~~D~G~Y~C~a~N~~G  114 (137)
T 3qr2_A           89 ASTISIDTLVEEDTGTYECRASNDPD  114 (137)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEECCTT
T ss_pred             ceEEEECCCCcccCEEEEEEEEecCC
Confidence            46899999999999999999998865

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=96.00  E-value=0.0038  Score=60.99  Aligned_cols=43  Identities=12%  Similarity=0.163  Sum_probs=32.4

Q ss_pred             CcEEEEecCC-CCCcccc----CC--C--eEEEcccCCCCCeeEEEEEcCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA----EG--N--VLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~----~~--~--~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      ++|+|.|.+. |....+.    ++  +  .|.|.+|+.+|+|.|+|.+.|+.
T Consensus        33 p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~Ng~   84 (207)
T 3rbs_A           33 AKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGK   84 (207)
T ss_dssp             CEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEETT
T ss_pred             CEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEECCC
Confidence            5899999666 6543322    11  3  69999999999999999997743

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=95.89  E-value=0.0033  Score=59.97  Aligned_cols=44  Identities=14%  Similarity=0.207  Sum_probs=35.1

Q ss_pred             CcEEEEecCC-CCCcccc--CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA--EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~--~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ..+.|.|.+. ++.....  .++.|.|.+|+.+|+|.|.|.+.|..+
T Consensus       122 ~~~~w~k~g~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~  168 (184)
T 2gi7_A          122 DQFALYKEGDPAPYKNPERWYRASFPIITVTAAHSGTYRCYSFSSRD  168 (184)
T ss_dssp             CEEEEEECCCCTTSCCCCEEEEESSSEEEETTCCSEEEEEEEECTTS
T ss_pred             cEEEEEECCCcCcceecCCCceEEEEEccCCccCCeEEEEEEEeCCC
Confidence            4789999766 7654332  467899999999999999999987654

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=95.87  E-value=0.0049  Score=59.38  Aligned_cols=44  Identities=14%  Similarity=0.302  Sum_probs=35.1

Q ss_pred             CcEEEEecCC-CCCcccc-----CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA-----EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~-----~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ..+.|.|.+. |+.....     .++.|.|.+|+.+|+|.|.|.+.+..+
T Consensus        33 ~~~~w~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g   82 (196)
T 3p2t_A           33 REYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVG   82 (196)
T ss_dssp             CEEEEEETTSCSCSEEECCCSSSSEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CEEEEEECCCCCcccccccccCCceEEEEeccCCcccCceEEEEEeCCCc
Confidence            4789999777 7764332     457899999999999999999976543

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=95.84  E-value=0.005  Score=58.32  Aligned_cols=43  Identities=21%  Similarity=0.390  Sum_probs=32.6

Q ss_pred             cEEEEecCC-C----------CCcccc---CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           3 YIKWSRADG-L----------PLQRYA---EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         3 ~~~w~~~~~-~----------~~~~~~---~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .|+|.|.+. +          +...+.   .++.|+|.+|+.+|+|.|.|.+.+..+
T Consensus        29 ~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~gsL~I~~v~~~D~G~Y~C~~~n~~g   85 (176)
T 1hng_A           29 EVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNG   85 (176)
T ss_dssp             EEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETTC
T ss_pred             cEEEEeCCceeEEEcCCCeecCCCCeEEECCCCcEEEcccccccCEEEEEEEEeCCC
Confidence            699999663 2          122221   467899999999999999999987665

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=95.82  E-value=0.0027  Score=60.87  Aligned_cols=43  Identities=12%  Similarity=0.110  Sum_probs=33.6

Q ss_pred             CcEEEEecCC-CCCcccc--CCCeEEEcccCCCCCeeEEEEEcCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA--EGNVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~--~~~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      .++.|.|++. ++..+..  .++.|.|.+|+.+|+|.|.|.+.+..
T Consensus       127 ~~~~w~k~g~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~  172 (188)
T 1oll_A          127 SMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNN  172 (188)
T ss_dssp             SEEEEEEESSSCEEEEEECSSEEEEEEEECCGGGCEEEEEECEEET
T ss_pred             CEEEEEECCccccccccCCCceeEEEECCCCcCCCcEEEEEEEcCC
Confidence            3689999776 7653322  46799999999999999999996543

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=95.81  E-value=0.0046  Score=60.27  Aligned_cols=43  Identities=23%  Similarity=0.329  Sum_probs=34.4

Q ss_pred             cEEEEecCC-CCCcc-ccCCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           3 YIKWSRADG-LPLQR-YAEGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         3 ~~~w~~~~~-~~~~~-~~~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      +|.|+|.+. |.... ...+.+|.|++|+.+|+|.|.|.+.+..+
T Consensus        39 ~i~W~~~~~~l~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~   83 (210)
T 1gsm_A           39 SVQWRGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGR   83 (210)
T ss_dssp             EEEEESSTTTTCCEEEESSEEEEEECSCCGGGCEEEEEEEEETTE
T ss_pred             ceEEeecccccCcEEecCCccEEEECccCcccCceEEEEEEeCCC
Confidence            799999887 84332 22467899999999999999999976543

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=95.79  E-value=0.0033  Score=65.49  Aligned_cols=43  Identities=28%  Similarity=0.407  Sum_probs=36.3

Q ss_pred             cEEEEecCC-CCCccccCCCe-EEEcccCCCCCeeEEEEEcCCCC
Q psy9228           3 YIKWSRADG-LPLQRYAEGNV-LRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         3 ~~~w~~~~~-~~~~~~~~~~~-l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .|+|.|.++ ||......++. |.|.+|+.+|+|.|.|.|+|..|
T Consensus       244 ~v~W~k~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~A~N~~G  288 (308)
T 4fom_A          244 KSVWSRLDGQWPDGLLASDNTLHFVHPLTFNYSGVYICKVTNSLG  288 (308)
T ss_dssp             EEECCBSSSCCCSSCBCSTTEEECCSCCCSCCCSEEEEEEEETTE
T ss_pred             EEEEEECCeECCCcEEEcCCeEEEECCCChhhCEEEEEEEEeCCC
Confidence            689999888 99887776554 55789999999999999988765

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=95.78  E-value=0.0063  Score=58.06  Aligned_cols=44  Identities=27%  Similarity=0.551  Sum_probs=36.2

Q ss_pred             CcEEEEecCC-CCCcccc---CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA---EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~---~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|.|.|.+. |+...+.   .++.|.|.+++.+|+|.|.|.+.|..+
T Consensus       130 ~~v~W~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g  177 (192)
T 2iep_A          130 PSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLG  177 (192)
T ss_dssp             CEEEEEETTEECCCCSSEEECTTSCEEESSCCGGGCEEEEEEEEETTE
T ss_pred             ceEEEEeCCEEccCCCcEEEecCCcEEEecCChhhCEEEEEEEEcCCC
Confidence            4799999666 7665443   567999999999999999999987765

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=95.78  E-value=0.0072  Score=58.28  Aligned_cols=44  Identities=9%  Similarity=0.079  Sum_probs=31.6

Q ss_pred             CcEEEEecCC-C-CCcccc-------CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-L-PLQRYA-------EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~-~~~~~~-------~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .+|+|.|.+. + +.....       ..+.|.|.+|+.+|+|.|.|.+.|..+
T Consensus       129 ~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~  181 (198)
T 1ugn_A          129 DGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSNS  181 (198)
T ss_dssp             SEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEECTTS
T ss_pred             cEEEEEECCCccCCccccccccCCCcceeEEEecccCcccCeEEEEEEEeCCC
Confidence            5799999766 5 333221       137999999999999999999987654

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=95.77  E-value=0.0062  Score=59.42  Aligned_cols=44  Identities=25%  Similarity=0.518  Sum_probs=35.5

Q ss_pred             CcEEEEecCC-CCCcc-c--cCCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQR-Y--AEGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~-~--~~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|.|.|.+. |+... +  ..++.|.|.+++.+|+|.|.|.+.|..+
T Consensus       140 p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G  187 (212)
T 2yd1_A          140 PNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECVAENSMG  187 (212)
T ss_dssp             CEEEEEETTEECCTTSTTEEEETTEEEECSCCGGGCEEEEEEEEETTE
T ss_pred             CeEEEEECCeEcccCCCeEEccCCeEEEccCChhhCEEEEEEeecCCC
Confidence            4799999666 66522 2  2577999999999999999999988765

>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=95.76  E-value=0.006  Score=47.70  Aligned_cols=25  Identities=20%  Similarity=0.464  Sum_probs=14.1

Q ss_pred             CCCCCCCEeccCCCCCceEee-CCCCCC
Q psy9228         144 NNCINNGLCQDAATRIGYTCI-CPPGFS  170 (834)
Q Consensus       144 ~pC~n~g~C~~~~~~~~~~C~-C~~g~~  170 (834)
                      ++|.++++|++.+  ++|+|. |..||.
T Consensus        11 ~~C~~~~~C~Nt~--Gsy~C~~~~~g~~   36 (71)
T 2kl7_A           11 EACKGEMKCINHY--GGYLCLPRSAAVI   36 (71)
T ss_dssp             CSCTTEEEEEETT--CCEEEEETTSCCC
T ss_pred             CCCCCCCEeECCC--CCeEecccCCccc
Confidence            3466666666655  666665 334554

>4hwn_A FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG superfamily, immune system, ST genomics, PSI-biology; 2.01A {Homo sapiens}

Probab=95.73  E-value=0.0055  Score=52.73  Aligned_cols=40  Identities=20%  Similarity=0.328  Sum_probs=32.2

Q ss_pred             cEEEEecCC-CCCccccCCCeEEEcccCCCCCeeEEEEEcCCC
Q psy9228           3 YIKWSRADG-LPLQRYAEGNVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus         3 ~~~w~~~~~-~~~~~~~~~~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      ++.|.|++. |+.  ...+..|.|.+|+.+|+|.|.|.+.+..
T Consensus        43 ~~~w~k~g~~l~~--~~~~~~l~i~~v~~~dsG~Y~C~~~~~~   83 (108)
T 4hwn_A           43 LFSFYKDGRIVQS--RGLSSEFQIPTASEDHSGSYWCEAATED   83 (108)
T ss_dssp             EEEEEETTEEEEE--EESCCEEEESSCCGGGCEEEEEEEECTT
T ss_pred             EEEEEECCcCccC--CCcccEEEeCccCcccCeEEEEEEEeCC
Confidence            499999555 653  2356789999999999999999998653

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=95.72  E-value=0.0045  Score=52.84  Aligned_cols=23  Identities=22%  Similarity=0.586  Sum_probs=21.4

Q ss_pred             CCeEEEcccCCCCCeeEEEEEcC
Q psy9228          20 GNVLRITNARLQDSGKYKCEIQG   42 (834)
Q Consensus        20 ~~~l~~~~~~~~d~g~y~c~~~~   42 (834)
                      +..|+|.+|+.+|+|.|.|.+.+
T Consensus        70 ~~~L~I~~v~~~D~G~Y~C~~~n   92 (108)
T 3m45_A           70 ELSISVSDVSLSDEGQYTCSLFT   92 (108)
T ss_dssp             EEEEEECSCCGGGCEEEEEEECS
T ss_pred             cEEEEECCCChhHCeEEEEEEEc
Confidence            56899999999999999999987

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=95.72  E-value=0.0053  Score=58.67  Aligned_cols=42  Identities=29%  Similarity=0.487  Sum_probs=35.0

Q ss_pred             CcEEEEecCC-CCCcccc-CCCeEEEcccCCCCCeeEEEEEcCC
Q psy9228           2 AYIKWSRADG-LPLQRYA-EGNVLRITNARLQDSGKYKCEIQGH   43 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~-~~~~l~~~~~~~~d~g~y~c~~~~~   43 (834)
                      .+|+|.|.+. |+..... .+..|+|.+++.+|+|.|.|.+.+.
T Consensus        35 ~~v~W~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~   78 (190)
T 2wv3_A           35 MYSYWTKNGVELTATRKNASNMEYRINKPRAEDSGEYHCVYHFV   78 (190)
T ss_dssp             EEEEEEETTEECTTCCBCCSEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             eEEEEEECCEECcccceEeccEEEEEecCCcccCEEEEEEEEeC
Confidence            4799999666 7765444 5789999999999999999999765

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=95.71  E-value=0.0063  Score=58.63  Aligned_cols=42  Identities=12%  Similarity=0.256  Sum_probs=33.7

Q ss_pred             cEEEEecCC-CCCccc-----cCCCeEEEcccCCCCCeeEEEEEcCCC
Q psy9228           3 YIKWSRADG-LPLQRY-----AEGNVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus         3 ~~~w~~~~~-~~~~~~-----~~~~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      .|.|.|.+. ++....     ..++.|.|.+|+.+|+|.|.|.+.+..
T Consensus        34 ~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~   81 (196)
T 2d3v_A           34 EYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSPA   81 (196)
T ss_dssp             EEEEEETTCSSCSEEECCCSSTTEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             EEEEEECCCCCCcccccccCCccccEEEeccCChhHCeEEEEEEeCCC
Confidence            789999776 765332     246789999999999999999997654

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=95.71  E-value=0.0072  Score=51.22  Aligned_cols=37  Identities=32%  Similarity=0.594  Sum_probs=28.5

Q ss_pred             EEEEecCC-CCCcccc---CCC---eEEEcccCCCCCeeEEEEE
Q psy9228           4 IKWSRADG-LPLQRYA---EGN---VLRITNARLQDSGKYKCEI   40 (834)
Q Consensus         4 ~~w~~~~~-~~~~~~~---~~~---~l~~~~~~~~d~g~y~c~~   40 (834)
                      |.|.|.+. |....+.   .++   .|.|.+|+.+|+|.|.|.+
T Consensus        39 v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~   82 (103)
T 2e7b_A           39 VKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSGRYSCSF   82 (103)
T ss_dssp             CEEEESSSBCCCSSSEEEEECSSEEEEEECSCCTTTCCCEEEEC
T ss_pred             eEEEECCEECCCCCcEEEEEcCCEEEEEEccCCcccCEEEEEEE
Confidence            89999666 6543333   233   5999999999999999984

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=95.69  E-value=0.0072  Score=65.30  Aligned_cols=44  Identities=30%  Similarity=0.607  Sum_probs=36.0

Q ss_pred             CcEEEEecCC--CCCcccc--CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG--LPLQRYA--EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~--~~~~~~~--~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .+|.|.|.++  ++...+.  .++.|.|.+|+.+|+|.|.|.+.|..+
T Consensus       235 p~i~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G  282 (384)
T 3kld_A          235 PTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRG  282 (384)
T ss_dssp             CEEEEEETTCCCCCTTCEECTTSCEEEECSCCGGGCEEEEEEEEETTE
T ss_pred             CcEEEEeCCCccccccceecCCCcEEEECCCChhhCEEEEEEEEcCCC
Confidence            4799999777  5554433  477999999999999999999987765

>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=95.68  E-value=0.0023  Score=60.42  Aligned_cols=46  Identities=22%  Similarity=0.554  Sum_probs=37.8

Q ss_pred             CCCCCCCCCCCCCCccCCC-----CCCCeeecCCCCeEEeCCCCcc----cCcccc
Q psy9228         167 PGFSGDRCSVLGEPCYPGA-----CGDGSCQDVDGAMKCLCPIGTA----GKRCEQ  213 (834)
Q Consensus       167 ~g~~G~~Ce~~~~~C~~~~-----C~~g~C~~~~~~~~C~C~~g~~----G~~Ce~  213 (834)
                      .||.+..+..++++|...+     |.+ .|++..++|.|.|++||+    |..|+.
T Consensus       113 ~Gf~~~~~~~di~eC~~~~~~~~~C~~-~C~n~~g~~~C~C~~Gy~l~~d~~~C~~  167 (170)
T 1szb_A          113 TGFEAFYAAEDIDECQVAPGEAPTCDH-HCHNHLGGFYCSCRAGYVLHRNKRTCSE  167 (170)
T ss_dssp             CEEEEEEEEEECCTTCCCTTSCCSSSS-EEEEETTEEEEECCTTEEECTTSSCEEE
T ss_pred             cCceeeeeccccCcccCCCCCCCccCC-ccccCCCCEEEeCCCCcEECCCCCcccc
Confidence            5677777767889998754     876 899999999999999998    677853

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=95.65  E-value=0.0064  Score=63.90  Aligned_cols=42  Identities=24%  Similarity=0.414  Sum_probs=38.3

Q ss_pred             EEEEecCC-CCCccccCCCeEEEc-ccCCCCCeeEEEEEcCCCC
Q psy9228           4 IKWSRADG-LPLQRYAEGNVLRIT-NARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         4 ~~w~~~~~-~~~~~~~~~~~l~~~-~~~~~d~g~y~c~~~~~~~   45 (834)
                      |+|.|.++ |+......++.|.|. +|+.+|+|.|.|.+.|..+
T Consensus       265 i~W~~~~~~~~~~~~~~~~~L~i~~~v~~~d~G~Y~C~a~N~~G  308 (331)
T 3u83_A          265 YHWTTLNGSLPKGVEAQNRTLFFKGPINYSLAGTYICEATNPIG  308 (331)
T ss_dssp             EEEEETTBSCCTTEEEETTEEEECSCCCGGGCEEEEEEEEETTE
T ss_pred             EEEEECCCcccccceecCcEEEEeCCCccccCeEEEEEEEeccc
Confidence            99999888 988877788999999 9999999999999998876

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=95.64  E-value=0.0085  Score=58.54  Aligned_cols=44  Identities=27%  Similarity=0.391  Sum_probs=34.7

Q ss_pred             CcEEEEecCC-CCCc--------ccc---CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQ--------RYA---EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~--------~~~---~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.+. |+..        .+.   .++.|.|.+++.+|+|.|.|.+.|..+
T Consensus       139 ~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G  194 (217)
T 2vr9_A          139 PTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVG  194 (217)
T ss_dssp             CEEEEEETTEEECCCCCC---CCCSEEEETTTEEEESSCCSTTCEEEEEEEEETTE
T ss_pred             CeEEEEECCcCCCcccccccccCCcEEecCCCcEEEeeCCHHHCeEEEEEEEcccc
Confidence            4799999665 6621        111   467999999999999999999998765

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=95.59  E-value=0.55  Score=49.59  Aligned_cols=35  Identities=29%  Similarity=0.863  Sum_probs=19.4

Q ss_pred             CCCccC-CCCCCCeeecCCCCeEEeCCCCcc----cCcccc
Q psy9228         178 GEPCYP-GACGDGSCQDVDGAMKCLCPIGTA----GKRCEQ  213 (834)
Q Consensus       178 ~~~C~~-~~C~~g~C~~~~~~~~C~C~~g~~----G~~Ce~  213 (834)
                      +|||.. ..|.+ .|.+..++|.|.|++||.    |..|..
T Consensus         1 i~ec~~~~~C~~-~C~n~~g~~~C~C~~g~~l~~d~~~C~~   40 (349)
T 3v64_C            1 VNECAEEGYCSQ-GCTNSEGAFQCWCEAGYELRPDRRSCKA   40 (349)
T ss_dssp             --------CCSS-EECCC---CCEECCTTEEECTTSSCEEE
T ss_pred             CcccCCCCCCcC-eeecCCCCeEEECCCCccCCCCCCcccc
Confidence            356652 34543 799999999999999986    567854

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.59  E-value=0.0081  Score=52.20  Aligned_cols=39  Identities=23%  Similarity=0.299  Sum_probs=30.2

Q ss_pred             CcEEEEecCC-CCCcccc-------CCCeEEEcccCCCCCeeEEEEE
Q psy9228           2 AYIKWSRADG-LPLQRYA-------EGNVLRITNARLQDSGKYKCEI   40 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~-------~~~~l~~~~~~~~d~g~y~c~~   40 (834)
                      .+|+|.|.+. |....+.       ....|+|.+|+.+|+|.|.|.+
T Consensus        43 p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~   89 (115)
T 2cr6_A           43 EPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEA   89 (115)
T ss_dssp             CSCEEEESSCEECCSSSCCBCCBTTTBCCBEECSCCTTTCEEEEEEE
T ss_pred             CccEEEECCEECCCCCcEEEEEcCCCEEEEEEcCCChhhCEEEEEEE
Confidence            3799999666 6654322       1237999999999999999995

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=95.59  E-value=0.0068  Score=58.85  Aligned_cols=44  Identities=30%  Similarity=0.430  Sum_probs=35.6

Q ss_pred             CcEEEEecCC-CCCccc---cCCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRY---AEGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~---~~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|.|.|.+. |+....   ..++.|.|.+++.+|+|.|.|.+.|..+
T Consensus       142 ~~v~W~~~~~~l~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g  189 (212)
T 2v9r_A          142 PTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGKYVCVGTNMVG  189 (212)
T ss_dssp             CEEEEEETTEEECTTSTTEEEETTEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CEEEEEECCccCCCCcceEEccCCeEEEeeCCHhhCeeEEEEEecccC
Confidence            4799999666 765322   2578999999999999999999988765

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=95.54  E-value=0.01  Score=57.95  Aligned_cols=41  Identities=12%  Similarity=0.127  Sum_probs=32.8

Q ss_pred             CcEEEEec--CC--CCCcccc---CCCeEEEcccCCCCCeeEEEEEcC
Q psy9228           2 AYIKWSRA--DG--LPLQRYA---EGNVLRITNARLQDSGKYKCEIQG   42 (834)
Q Consensus         2 ~~~~w~~~--~~--~~~~~~~---~~~~l~~~~~~~~d~g~y~c~~~~   42 (834)
                      +.|+|.|.  +|  |+.+.+.   .+..|.|.+|+.+|+|.|.|.+.+
T Consensus        38 ~~v~w~~~~~~g~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~n   85 (213)
T 2x1w_L           38 LNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKI   85 (213)
T ss_dssp             CCEEEEEETTTEEECCCSSSCEEETTTEEEEEGGGTTTCSEEEEEEC-
T ss_pred             cEEEEEhhcCCCccccCCCcccccCCccEEEccCChhcCceEEEEEEE
Confidence            47899886  56  7766544   457899999999999999999975

>4gos_A V-SET domain-containing T-cell activation inhibit; immunoglobulin domain, glycoprotein, disulfide bond, immunit adaptive immunity; HET: NAG BMA MAN; 1.59A {Homo sapiens}

Probab=95.48  E-value=0.011  Score=52.49  Aligned_cols=25  Identities=40%  Similarity=0.716  Sum_probs=22.5

Q ss_pred             CeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228          21 NVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus        21 ~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ..|+|.+|+.+|+|.|.|.+.+..+
T Consensus        84 ~sL~I~~v~~~D~G~Y~C~v~~~~g  108 (125)
T 4gos_A           84 ASLRLKNVQLTDAGTYKCYIITSKG  108 (125)
T ss_dssp             CCEEESSCCGGGCEEEEEEEEETTE
T ss_pred             EEEEECCCChHHCEEEEEEEEeCCC
Confidence            4799999999999999999987665

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=95.45  E-value=0.0066  Score=58.45  Aligned_cols=44  Identities=14%  Similarity=0.163  Sum_probs=34.4

Q ss_pred             CcEEEEecCC-CCCccc-------cCCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRY-------AEGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~-------~~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ..+.|.|.+. ++....       ..++.|.|.+|+.+|+|.|.|.+.|..+
T Consensus       128 ~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~  179 (196)
T 3p2t_A          128 DTFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSHGFS  179 (196)
T ss_dssp             EEEEEEETTCCCGGGSEEEEEEEEEEEEEEEECSCCGGGCEEEEEEEECGGG
T ss_pred             CEEEEEeCCCcccceeecccccccCcceEEEeCCCcccCCCeEEEEEEcCCC
Confidence            3689999766 655322       1467899999999999999999987654

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=95.43  E-value=0.0074  Score=58.20  Aligned_cols=42  Identities=14%  Similarity=0.313  Sum_probs=33.3

Q ss_pred             cEEEEecCC-CCCcc-----ccCCCeEEEcccCCCCCeeEEEEEcCCC
Q psy9228           3 YIKWSRADG-LPLQR-----YAEGNVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus         3 ~~~w~~~~~-~~~~~-----~~~~~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      .|+|.|.+. ++...     ...+..|.|.+|+.+|+|.|.|.+.+..
T Consensus        34 ~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~   81 (198)
T 1ugn_A           34 EYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSDT   81 (198)
T ss_dssp             CEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEETT
T ss_pred             EEEEEECCccccccccccccCCcccEEEECCCCHHHCeEEEEEEECCC
Confidence            689999666 65322     1257899999999999999999997654

>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus}

Probab=95.42  E-value=0.0045  Score=52.99  Aligned_cols=41  Identities=15%  Similarity=0.260  Sum_probs=31.0

Q ss_pred             cEEEEecCC-CCCccc---cCCCeEEEcccCCCCCeeEEEEEcCC
Q psy9228           3 YIKWSRADG-LPLQRY---AEGNVLRITNARLQDSGKYKCEIQGH   43 (834)
Q Consensus         3 ~~~w~~~~~-~~~~~~---~~~~~l~~~~~~~~d~g~y~c~~~~~   43 (834)
                      .+.|.|.+. ++..+.   ..+..|.|.+|+.+|+|.|.|.+.+.
T Consensus        34 ~~~w~k~g~~~~~~~~~~~~~~~~l~I~~v~~~dsG~Y~C~~~n~   78 (105)
T 2vsd_A           34 WVQLWLNGTLRFDKEKDKEQDAAEFSFAVTNLEDAGTYQCRYQVS   78 (105)
T ss_dssp             EEEEEETTEEEEEEEECTTCSEEEEEEECCSGGGCEEEEEEEEEE
T ss_pred             EEEEEECCccceeeeccCCCCEEEEEECCCCHHHCeEEEEEEEcC
Confidence            578999655 443221   24568999999999999999999764

>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1

Probab=95.42  E-value=0.009  Score=51.22  Aligned_cols=24  Identities=21%  Similarity=0.319  Sum_probs=21.7

Q ss_pred             CeEEEcccCCCCCeeEEEEEcCCC
Q psy9228          21 NVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus        21 ~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      ..|+|.+|+.+|+|+|.|.+.+..
T Consensus        71 ~~L~I~~v~~~DsG~Y~C~~~n~~   94 (108)
T 1jhl_L           71 FTLTISSLEPEDFAMYICQQHNEY   94 (108)
T ss_dssp             EEEEECSCCTTCCSEEEEEECSSS
T ss_pred             EEEEECCCCHHHCEEEEEEEccCC
Confidence            479999999999999999998764

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=95.41  E-value=0.008  Score=57.87  Aligned_cols=43  Identities=2%  Similarity=-0.096  Sum_probs=31.3

Q ss_pred             CcEEEEecCC-CCCc-cc---c-C---CCeEEEcccCCCCCeeEEEEEcCCC
Q psy9228           2 AYIKWSRADG-LPLQ-RY---A-E---GNVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~-~~---~-~---~~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      .+|.|.|.+. ++.. ..   . .   .+.|.|.+|+.+|+|.|.|.+.+..
T Consensus       128 ~~~~W~k~g~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  179 (196)
T 2d3v_A          128 DRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSRRH  179 (196)
T ss_dssp             SEEEEEEC---CCEEEEECEECTTSCEEEEEECCCCBTTBCEEEEEEEEETT
T ss_pred             CEEEEEccCCcccccccccccccCCCceeEEEeeecCcccCeeEEEEEEccC
Confidence            4789999766 6532 11   1 2   2799999999999999999997654

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=95.35  E-value=0.016  Score=50.37  Aligned_cols=44  Identities=16%  Similarity=0.295  Sum_probs=31.2

Q ss_pred             CcEEEEecCC-CCCcc--------ccCCCeEEEc-----ccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQR--------YAEGNVLRIT-----NARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~--------~~~~~~l~~~-----~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|.|.|.+. |....        ...++.|.+.     +|+.+|+|.|.|.+.|..|
T Consensus        39 p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~D~G~Y~C~a~N~~G   96 (117)
T 2v9t_A           39 PTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLG   96 (117)
T ss_dssp             CEEEEEETTEECCCTTTCSSCSEEECTTSCEEESSCCCBTTBCSSCEEEEEEEEETTE
T ss_pred             CeEEEEECCEeccccCCCCcceeEEecCCcEEEEEEEeCCCCcCcCEEEEEEEEeCcc
Confidence            4799999666 66432        1134555443     6689999999999998865

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=95.33  E-value=0.0048  Score=54.30  Aligned_cols=43  Identities=28%  Similarity=0.400  Sum_probs=33.4

Q ss_pred             cEEEEecCC-CCCc---cc-c----CCC----eEEEcccCCCCC-eeEEEEEcCCCC
Q psy9228           3 YIKWSRADG-LPLQ---RY-A----EGN----VLRITNARLQDS-GKYKCEIQGHDS   45 (834)
Q Consensus         3 ~~~w~~~~~-~~~~---~~-~----~~~----~l~~~~~~~~d~-g~y~c~~~~~~~   45 (834)
                      .|.|.|.+. |...   +. +    .++    .|+|.+|+.+|+ |.|.|.+.|..+
T Consensus        45 ~i~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~~G~Y~C~a~N~~G  101 (122)
T 2cry_A           45 RIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFG  101 (122)
T ss_dssp             EEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHHHSCEEEEEECSSC
T ss_pred             EeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEEcCCChhhCCceEEEEEECCCC
Confidence            399999777 6642   11 1    123    899999999999 999999998876

>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ...

Probab=95.32  E-value=0.0079  Score=44.37  Aligned_cols=34  Identities=29%  Similarity=0.783  Sum_probs=27.5

Q ss_pred             CCccC--CCCCCCeeecCCCCeEEeCCCCcc----cCcccc
Q psy9228         179 EPCYP--GACGDGSCQDVDGAMKCLCPIGTA----GKRCEQ  213 (834)
Q Consensus       179 ~~C~~--~~C~~g~C~~~~~~~~C~C~~g~~----G~~Ce~  213 (834)
                      |||..  .+|.+ .|+|..++|+|.|++||.    |..|+.
T Consensus         2 dEC~~~~~~C~~-~C~nt~Gsy~C~C~~Gy~L~~d~~~C~d   41 (55)
T 2jkh_L            2 KLCSLDNGDCDQ-FCHEEQNSVVCSCARGYTLADNGKACIP   41 (55)
T ss_dssp             CCTTTGGGGCSS-EEEEETTEEEEECCTTEEECTTSSCEEE
T ss_pred             ccccCCCCCcCc-EeEcCCCCeEEeCCCCCEECCCCCeecc
Confidence            57764  45764 899999999999999996    677864

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=95.24  E-value=0.012  Score=55.48  Aligned_cols=39  Identities=28%  Similarity=0.457  Sum_probs=32.0

Q ss_pred             cEEEEecCC-CCCccccCCCeEEEcccCCCCCeeEEEEEcCC
Q psy9228           3 YIKWSRADG-LPLQRYAEGNVLRITNARLQDSGKYKCEIQGH   43 (834)
Q Consensus         3 ~~~w~~~~~-~~~~~~~~~~~l~~~~~~~~d~g~y~c~~~~~   43 (834)
                      +|.|.|.+. |..  ...+..|.|.+++.+|+|.|.|.+.|.
T Consensus       117 ~~~W~~~g~~~~~--~~~~~~L~i~~v~~~d~G~Y~C~a~n~  156 (176)
T 1f2q_A          117 KVIYYKDGEALKY--WYENHNISITNATVEDSGTYYCTGKVW  156 (176)
T ss_dssp             EEEEEETTEECCS--CCCSSEEEESSCCGGGCEEEEEEEEET
T ss_pred             EEEEEECCEEEee--ecCCCeEEECCCCcccCEEEEEEEEeC
Confidence            799999544 642  235689999999999999999999875

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=95.24  E-value=0.013  Score=57.29  Aligned_cols=44  Identities=30%  Similarity=0.517  Sum_probs=35.3

Q ss_pred             CcEEEEecCC-CCCccc--c------CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRY--A------EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~--~------~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|.|.|.+. |+....  .      .+..|+|.+|+.+|+|.|.|.+.|..+
T Consensus        48 p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g  100 (215)
T 3mtr_A           48 ATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIG  100 (215)
T ss_dssp             CEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEEECSSC
T ss_pred             CEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEEEECCC
Confidence            4799999665 776532  1      257899999999999999999988776

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=95.23  E-value=0.01  Score=52.34  Aligned_cols=24  Identities=33%  Similarity=0.523  Sum_probs=22.1

Q ss_pred             CCeEEEcccCCCCCeeEEEEEcCC
Q psy9228          20 GNVLRITNARLQDSGKYKCEIQGH   43 (834)
Q Consensus        20 ~~~l~~~~~~~~d~g~y~c~~~~~   43 (834)
                      ...|+|.+|+.+|+|.|.|.+.+.
T Consensus        65 ~~~L~I~~v~~~DsG~Y~C~a~n~   88 (124)
T 3rbg_A           65 QLSITVPNVTLQDEGVYKCLHYSD   88 (124)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEESS
T ss_pred             EEEEEECCCChHHCEEEEEEEEcC
Confidence            468999999999999999999876

>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=95.21  E-value=0.008  Score=46.96  Aligned_cols=34  Identities=24%  Similarity=0.417  Sum_probs=26.5

Q ss_pred             CccCCCCC-CccCCCceeeecCCCcEEcCC-CCCCC
Q psy9228         608 ENNMCMKG-DVCKNGGMCKVTPDSYECLCS-LGYAP  641 (834)
Q Consensus       608 ~~~~C~~~-~pC~ngg~C~~~~~~~~C~C~-~g~~G  641 (834)
                      ++|+|... .+|.++++|++..++|+|.|. .||.+
T Consensus         2 DidEC~~~~~~C~~~~~C~Nt~Gsy~C~~~~~g~~~   37 (71)
T 2kl7_A            2 DVNECLTIPEACKGEMKCINHYGGYLCLPRSAAVIN   37 (71)
T ss_dssp             CSCCTTCCCCSCTTEEEEEETTCCEEEEETTSCCCS
T ss_pred             ccccccCCCCCCCCCCEeECCCCCeEecccCCcccc
Confidence            46888752 389999999999999999843 46654

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=95.20  E-value=0.013  Score=60.19  Aligned_cols=44  Identities=20%  Similarity=0.336  Sum_probs=36.0

Q ss_pred             CcEEEEecCC-CCCcccc--------CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA--------EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~--------~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .+|.|.|.+. |+.....        .++.|.|.+|+.+|+|.|.|.+.|..|
T Consensus       217 ~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G  269 (289)
T 3ejj_X          217 FNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVG  269 (289)
T ss_dssp             CEEEEEETTEECCCCEEEEECSSSEEEEEEEEESSCCSSSCEEEEEEEECSSC
T ss_pred             eEEEEEECCEEeeccCCcccccceEEeeEEEEEEeecccCCEEEEEEEEcCCC
Confidence            4799999766 7664321        267999999999999999999998876

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=95.20  E-value=0.014  Score=56.60  Aligned_cols=44  Identities=23%  Similarity=0.400  Sum_probs=33.8

Q ss_pred             CcEEEEecCC-CCCcccc----CC--CeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA----EG--NVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~----~~--~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      +.|+|.|.+. |....+.    .+  ..|+|.+|+.+|+|.|.|.+.+..+
T Consensus        33 ~~i~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~   83 (212)
T 2r15_A           33 LKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKT   83 (212)
T ss_dssp             CEEEEEETTEECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSC
T ss_pred             ceEEEEECCEEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCc
Confidence            4799999665 7654333    22  3499999999999999999987654

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=95.19  E-value=0.015  Score=59.65  Aligned_cols=44  Identities=20%  Similarity=0.353  Sum_probs=36.0

Q ss_pred             CcEEEEecCC-CCCcccc----CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA----EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~----~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|.|.|.+. |+...+.    .+..|.|.+|+.+|+|.|.|.+.|..|
T Consensus       224 p~v~W~~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G  272 (291)
T 2wim_A          224 PAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAG  272 (291)
T ss_dssp             CEEEEEETTEECCCTTTEEECSTTCEEEEESCCSTTCEEEEEEEEETTE
T ss_pred             CeEEEEECCEECcCCccEEEcCCccEEEEeeCCcccCEEEEEEEEECCC
Confidence            4799999655 7664433    467899999999999999999998876

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=95.18  E-value=0.021  Score=61.01  Aligned_cols=44  Identities=18%  Similarity=0.281  Sum_probs=34.5

Q ss_pred             CcEEEEecCC-C-CCcc-----ccCCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-L-PLQR-----YAEGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~-~~~~-----~~~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.++ + ....     ...++.|+|.+|+.+|+|.|+|.+.|..+
T Consensus       275 p~i~W~~~~~~~~~~~~~~~r~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g  325 (361)
T 2xot_A          275 MTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVEDGGVYTCYAMGETF  325 (361)
T ss_dssp             CEEEEECTTSCBCCSCCSSSSEEEETTEEEESSCCTTSCEEEEEEEECSSC
T ss_pred             CeEEEEeCCCeeEeecccCCceEeecCeEEEeecCcccCEEEEEEEecCCC
Confidence            4799999777 3 3221     11468999999999999999999998855

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=95.17  E-value=0.015  Score=55.27  Aligned_cols=40  Identities=23%  Similarity=0.445  Sum_probs=32.1

Q ss_pred             CcEEEEecCCCCCccccCCCeEEEcccCCCCCeeEEEEEcCCC
Q psy9228           2 AYIKWSRADGLPLQRYAEGNVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus         2 ~~~~w~~~~~~~~~~~~~~~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      ..++|.|.+..   ....++.|.|.+|+.+|+|.|.|.+.+..
T Consensus        36 ~~~~W~k~g~~---~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~   75 (184)
T 2gi7_A           36 DLYRLEKLSSS---RYQDQAVLFIPAMKRSLAGRYRCSYQNGS   75 (184)
T ss_dssp             SEEEEEETTTC---CEESSSEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CEEEEEECCcc---ccCcccEEEECcCChhhCceEEEEEEcCC
Confidence            47899994434   23467899999999999999999997654

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=95.16  E-value=0.015  Score=55.70  Aligned_cols=43  Identities=21%  Similarity=0.376  Sum_probs=33.4

Q ss_pred             CcEEEEecCC-CC--C-cccc---CCCeEEEcccCCCCCeeEEEEEcCCC
Q psy9228           2 AYIKWSRADG-LP--L-QRYA---EGNVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus         2 ~~~~w~~~~~-~~--~-~~~~---~~~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      .+|+|.|.+. +.  . .+..   .++.|+|.+|+.+|+|.|.|.+.+..
T Consensus        40 ~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~   89 (201)
T 3s97_C           40 LSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPS   89 (201)
T ss_dssp             CEEEEEESSTTCBCCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEEGG
T ss_pred             eEEEEEECCceeeeeeCCCeEEEcCCCeEEECcCCcccCeEEEEEEEecC
Confidence            6899999776 53  2 1111   47899999999999999999997654

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=95.16  E-value=0.013  Score=56.85  Aligned_cols=37  Identities=27%  Similarity=0.525  Sum_probs=30.7

Q ss_pred             cEEEEecCC-CCCccccCCCeEEEcccCCCCCeeEEEEEcCC
Q psy9228           3 YIKWSRADG-LPLQRYAEGNVLRITNARLQDSGKYKCEIQGH   43 (834)
Q Consensus         3 ~~~w~~~~~-~~~~~~~~~~~l~~~~~~~~d~g~y~c~~~~~   43 (834)
                      +|+|.|.+. |+...    ..|.|.+|+.+|+|.|.|.+.+.
T Consensus        39 ~v~W~k~g~~l~~~~----~~L~i~~v~~~D~G~Y~C~a~n~   76 (204)
T 3sgj_C           39 STQWFHNESLISSQA----SSYFIDAATVDDSGEYRCQTQLS   76 (204)
T ss_dssp             CEEEEETTEEESCCS----SEEEESSCCGGGCEEEEEEETTS
T ss_pred             EEEEEECCEEcccCc----cEEEEecccccCCEEEEEEeCCC
Confidence            499999555 65433    89999999999999999999754

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=95.14  E-value=0.018  Score=56.49  Aligned_cols=41  Identities=15%  Similarity=0.390  Sum_probs=33.9

Q ss_pred             CcEEEEecCC-CCCccccCCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYAEGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.+. |+..   ....|.|.+++.+|+|.|.|.+.|..+
T Consensus       148 ~~v~W~~~~~~~~~~---~~~~L~i~~v~~~d~G~Y~C~a~n~~g  189 (218)
T 3k0w_A          148 PHYQWFKNELPLTHE---TKKLYMVPYVDLEHQGTYWCHVYNDRD  189 (218)
T ss_dssp             CEEEEEETTEECTTC---CSSEEEESSCCGGGCEEEEEEEECSSC
T ss_pred             CeEEEEECCEECCCC---CCCEEEEeecChhcCEEEEEEEEcCCC
Confidence            5799999665 7654   346899999999999999999988655

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=95.13  E-value=0.015  Score=56.20  Aligned_cols=44  Identities=20%  Similarity=0.286  Sum_probs=33.7

Q ss_pred             CcEEEEecCC--CCCccc-------------cCCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG--LPLQRY-------------AEGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~--~~~~~~-------------~~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|.|.|.+.  |+....             ..++.|.|.+++.+|+|.|.|.+.|..+
T Consensus       135 ~~i~W~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g  193 (212)
T 1f97_A          135 SEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYG  193 (212)
T ss_dssp             CEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSS
T ss_pred             CEEEEEeCCcccccccccccccccCceeEecCCCceEEEEecChhhCcEEEEEEccccC
Confidence            4799999664  443222             2467999999999999999999998876

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=95.12  E-value=0.0088  Score=58.19  Aligned_cols=40  Identities=13%  Similarity=0.307  Sum_probs=31.7

Q ss_pred             CcEEEEecCC-CCCccccCCCeEEEcccCCCCCeeEEEEEcC
Q psy9228           2 AYIKWSRADG-LPLQRYAEGNVLRITNARLQDSGKYKCEIQG   42 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~~~~~l~~~~~~~~d~g~y~c~~~~   42 (834)
                      .+|+|.|.+. |+.. ...++.|.|.+++.+|+|.|.|.+.+
T Consensus        30 ~~i~W~k~g~~l~~~-~~~~~~L~i~~v~~~DsG~Y~C~~~~   70 (204)
T 1sy6_A           30 KNITWFKDGKMIGFL-TEDKKKWNLGSNAKDPRGMYQCKGSQ   70 (204)
T ss_dssp             SEEEEEETTEEEEEE-ESSCCCEEEEEGGGCCEEEEEEESSS
T ss_pred             CEEEEEECCEECCCC-CCCCCeEEeCCCCcCCCEEEEEEecC
Confidence            5899999555 7643 23567899999999999999999743

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=95.08  E-value=0.017  Score=64.00  Aligned_cols=44  Identities=23%  Similarity=0.498  Sum_probs=35.3

Q ss_pred             CcEEEEecCC--CCCcc---cc---CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG--LPLQR---YA---EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~--~~~~~---~~---~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.+|  ++...   +.   .++.|+|++|+.+|+|.|+|.++|..|
T Consensus       380 p~i~W~~~~~~~~~~~~~~~~~~~~~~g~L~i~~v~~~D~G~Y~C~a~N~~G  431 (452)
T 3zyi_A          380 SSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYTCMVTNVAG  431 (452)
T ss_dssp             SEEEEECTTSCEECSSCCCSSCEECTTSCEECSSCCTTCCEEEEEEEECSSC
T ss_pred             CcEEEEeCCCcEeccCCCCCCEEECCCCeEEEeecCHHHCEEEEEEEEcCCC
Confidence            5799999777  44321   21   568999999999999999999998876

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=95.05  E-value=0.009  Score=58.84  Aligned_cols=43  Identities=9%  Similarity=0.084  Sum_probs=32.1

Q ss_pred             CcEEEEecCC-CCCccc-----cCCC--eEEEcccCCCCCeeEEEEEcCCC
Q psy9228           2 AYIKWSRADG-LPLQRY-----AEGN--VLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~-----~~~~--~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      ..|.|.|.+. |+....     ..+.  .|.|.+|+.+|+|.|.|.+.+..
T Consensus        37 ~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~   87 (218)
T 1uct_A           37 YLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGH   87 (218)
T ss_dssp             SEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEETT
T ss_pred             CEEEEEECCCcccccccccCCCCcceeeEEEEcccccccCEEEEEEEEcCC
Confidence            4799999766 654321     1345  89999999999999999997654

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=95.03  E-value=0.013  Score=57.12  Aligned_cols=44  Identities=20%  Similarity=0.322  Sum_probs=33.1

Q ss_pred             CcEEEEecCC-CCCcc---cc------CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQR---YA------EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~---~~------~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|.|.|.+. |+...   +.      ....|.|.+++.+|+|.|.|.+.|..|
T Consensus       138 p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G  191 (212)
T 2yd6_A          138 PEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAG  191 (212)
T ss_dssp             CEEEEEETTEEC------CCEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTE
T ss_pred             CeEEEEECCccccCcCCCceEEEEecCCeEEEEEcCCCcccCEEEEEEEECCCC
Confidence            4799999666 66531   11      247999999999999999999998865

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=95.01  E-value=0.014  Score=57.11  Aligned_cols=43  Identities=16%  Similarity=0.258  Sum_probs=32.9

Q ss_pred             cEEEEecCC-CCCccc--------------cCCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           3 YIKWSRADG-LPLQRY--------------AEGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         3 ~~~w~~~~~-~~~~~~--------------~~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      +|.|.|.+. +.....              .....|+|.+|+.+|+|.|.|.+.|..+
T Consensus       138 ~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g  195 (213)
T 2x1w_L          138 DFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLM  195 (213)
T ss_dssp             EEEEECSCSSCCSEEEEEEEECCCSSCSCEEEEEEEEESSCCGGGCEEEEEEEECSSC
T ss_pred             EEEEEecCCccceEEEeccccccccCccceeeeEEEEECCCCcccCEEEEEEEecCCC
Confidence            699999666 554211              1134599999999999999999998775

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=94.95  E-value=0.021  Score=55.94  Aligned_cols=41  Identities=17%  Similarity=0.450  Sum_probs=34.0

Q ss_pred             CcEEEEecCC-CCCccccCCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYAEGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|.|.|.+. ++..   .+..|+|.+++.+|+|.|.|.+.+..+
T Consensus        48 ~~v~W~~~~~~~~~~---~~~~L~i~~v~~~d~G~Y~C~~~n~~~   89 (218)
T 3k0w_A           48 VQYQWFKMNKEIPNG---NTSELIFNAVHVKDAGFYVCRVNNNFT   89 (218)
T ss_dssp             SEEEEEETTEECTTC---CSSEEEETTCCGGGCEEEEEEEECTTC
T ss_pred             CEEEEEECCEECCCC---CCCEEEEccCChhhCeEeEEEEEcCCC
Confidence            4799999666 7654   457999999999999999999987654

>1ob1_C Major merozoite surface protein; immune system, immunoglobulin/complex, immunoglobulin, antib fragment, MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum} SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A

Probab=94.91  E-value=0.022  Score=46.71  Aligned_cols=70  Identities=23%  Similarity=0.564  Sum_probs=51.8

Q ss_pred             CCCCCCCCEeccCCCCCceEeeCCCCCCC--CCCCCCC-CCccCCC--CC-CCeeecCC-----CCeEEeCCCCc-----
Q psy9228         143 HNNCINNGLCQDAATRIGYTCICPPGFSG--DRCSVLG-EPCYPGA--CG-DGSCQDVD-----GAMKCLCPIGT-----  206 (834)
Q Consensus       143 ~~pC~n~g~C~~~~~~~~~~C~C~~g~~G--~~Ce~~~-~~C~~~~--C~-~g~C~~~~-----~~~~C~C~~g~-----  206 (834)
                      .+-|..++.|.... .+...|+|.+||.|  ..|..+. +.|..++  |. ++.|....     +-..|.|..||     
T Consensus         9 ~~~C~~NA~C~r~~-~g~e~C~C~~gy~gdg~~Cv~~~~~sC~~nNGGCd~nA~C~~~~~~~~~~ki~C~C~~g~~~~~~   87 (99)
T 1ob1_C            9 KKQCPQNSGCFRHL-DEREECKCLLNYKQEGDKCVENPNPTCNENNGGCDADAKCTEEDSGSNGKKITCECTKPDSYPLF   87 (99)
T ss_dssp             SCCCCTTEEEECCT-TSCCEEEECTTEEEETTEEEECSCCCSTTGGGGCCTTEEEECCSCSSSSCCCEEEECSTTCCEEG
T ss_pred             cCCCCCCCCeEEcC-CCCEEEEecCCeecCCCeEeeCCCCChhhcCCCcCCCceeEecCCcccCCceEeEeCCCCcccce
Confidence            66788899997632 27799999999985  5675543 6887654  76 68999775     56899999995     


Q ss_pred             ccCcccc
Q psy9228         207 AGKRCEQ  213 (834)
Q Consensus       207 ~G~~Ce~  213 (834)
                      .|..|..
T Consensus        88 ~gvf~~~   94 (99)
T 1ob1_C           88 DGIFCSH   94 (99)
T ss_dssp             GGTEECC
T ss_pred             eEEEecc
Confidence            4666653

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=94.90  E-value=0.015  Score=54.75  Aligned_cols=38  Identities=34%  Similarity=0.590  Sum_probs=31.7

Q ss_pred             cEEEEecCC-CCCccccCCCeEEEcccCCCCCeeEEEEEcCCC
Q psy9228           3 YIKWSRADG-LPLQRYAEGNVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus         3 ~~~w~~~~~-~~~~~~~~~~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      +|+|.|.+. |+.    .+..|+|.+++.+|+|.|.|.+.+..
T Consensus        36 ~i~W~~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~~~~~~   74 (176)
T 1f2q_A           36 STKWFHNGSLSEE----TNSSLNIVNAKFEDSGEYKCQHQQVN   74 (176)
T ss_dssp             CCEEEETTEECSC----CSSEEEECSCCGGGCEEEEEECTTSS
T ss_pred             eEEEEECCeECCC----CceEEEEeccceecCEEEEEEcCCcc
Confidence            689999655 653    46899999999999999999997644

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=94.90  E-value=0.014  Score=56.57  Aligned_cols=44  Identities=9%  Similarity=0.193  Sum_probs=34.8

Q ss_pred             CcEEEEecCC-CCCccccC-------CCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYAE-------GNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~~-------~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.+. ++......       ...|.|.+++.+|+|.|+|.++|..+
T Consensus       148 p~i~W~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g  199 (218)
T 4frw_A          148 PSVTWDTEVKGTTSSRSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGL  199 (218)
T ss_dssp             CEEEEEESSCCEEEEEEEECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTC
T ss_pred             ceEEEEECCcccccCceEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCC
Confidence            5899999776 66544431       24799999999999999999998755

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=94.88  E-value=0.022  Score=54.13  Aligned_cols=44  Identities=25%  Similarity=0.408  Sum_probs=33.7

Q ss_pred             CcEEEEecCC-CCCcc-cc----CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQR-YA----EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~-~~----~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ..|.|.|.+. ++... +.    .+..|.|.+++.+|+|.|.|.+.+..+
T Consensus        37 ~~i~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~   86 (192)
T 2iep_A           37 PEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVG   86 (192)
T ss_dssp             CEEEEEETTEECCTTCTTEEEEGGGTEEEESSCCGGGCEEEEEEEECSSS
T ss_pred             CeEEEEECCEEccccCccEEEcCCccEEEEcCCCcccCeEEEEEEEcCCC
Confidence            4799999665 65421 11    456799999999999999999987654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=94.88  E-value=0.02  Score=63.12  Aligned_cols=44  Identities=23%  Similarity=0.497  Sum_probs=34.7

Q ss_pred             CcEEEEecCC-C-CCcc---cc---CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-L-PLQR---YA---EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~-~~~~---~~---~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.++ + ....   +.   .++.|+|++|+.+|+|.|+|.+.|..|
T Consensus       370 p~i~W~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G  421 (440)
T 3zyj_A          370 TSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTCMVSNSVG  421 (440)
T ss_dssp             SEEEEECTTSCEEESSSCCSSEEECTTCCEEESSCCSTTCEEEEEEEECSSC
T ss_pred             CceEEEeCCCceeeccCCCceEEEccCCeEEEccCChhhCEEEEEEEEcCCC
Confidence            4799999777 3 2221   11   468899999999999999999998876

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=94.85  E-value=0.018  Score=54.99  Aligned_cols=44  Identities=25%  Similarity=0.386  Sum_probs=33.6

Q ss_pred             CcEEEEecCC-CCCcccc---CCC---eEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA---EGN---VLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~---~~~---~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|.|.|.+. ++...+.   .++   .|+|.+++.+|+|.|.|.+.+..+
T Consensus        37 ~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~   87 (197)
T 3lcy_A           37 PDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVG   87 (197)
T ss_dssp             CEEEEEETTEEECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEEEECSSC
T ss_pred             CEEEEEECCEECCCCccEEEEeCCCEEEEEEecCCccCCEEEEEEEECCCC
Confidence            4799999666 6544333   223   899999999999999999986654

>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A

Probab=94.76  E-value=0.0061  Score=61.09  Aligned_cols=39  Identities=18%  Similarity=0.563  Sum_probs=31.0

Q ss_pred             CccCCCC-CCccCCCceeeecCCCcEEcCCCCCC--CCCccc
Q psy9228         608 ENNMCMK-GDVCKNGGMCKVTPDSYECLCSLGYA--PPNCAK  646 (834)
Q Consensus       608 ~~~~C~~-~~pC~ngg~C~~~~~~~~C~C~~g~~--G~~Ce~  646 (834)
                      ++|+|.. ..+|..+++|++..++|.|.|++||.  |..|..
T Consensus         4 DiDEC~~~~~~C~~~a~C~Nt~Gsy~C~C~~Gy~GnG~~C~d   45 (285)
T 1gl4_A            4 AQQTCANNRHQCSVHAECRDYATGFCCRCVANYTGNGRQCVA   45 (285)
T ss_dssp             ---CHHHHGGGSCTTEEEEECSSCEEEEECTTEEECSSSEEE
T ss_pred             cchhccCCCCCCCCCCEeEcCCCCeEEEcCCCCCCCCCcCCC
Confidence            5688863 23999999999999999999999998  778864

>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus}

Probab=94.75  E-value=0.016  Score=61.40  Aligned_cols=57  Identities=21%  Similarity=0.353  Sum_probs=38.5

Q ss_pred             CCceEeeCCCCCCCCCCCCCCCCccCCC----------------CC-CC-eeec-------CCCCeEE-eCCCCcccCcc
Q psy9228         158 RIGYTCICPPGFSGDRCSVLGEPCYPGA----------------CG-DG-SCQD-------VDGAMKC-LCPIGTAGKRC  211 (834)
Q Consensus       158 ~~~~~C~C~~g~~G~~Ce~~~~~C~~~~----------------C~-~g-~C~~-------~~~~~~C-~C~~g~~G~~C  211 (834)
                      ..++.|.|.+||+|.+||.-.+.....|                |. +| .|.-       ..++..| .|.+|++|.+|
T Consensus       269 ~~~~~C~C~~nt~G~~Ce~C~~gy~~~p~~~g~~~~~~~C~~C~Cn~~g~~C~~d~~~~~c~~~~G~C~~C~~n~~G~~C  348 (375)
T 4aqt_A          269 FDKLMCNCKHNTYGVDCEKCLPFFNDRPWRRATAESASECLPCDCNGRSQECYFDPELYRSTGHGGHCTNCRDNTDGAKC  348 (375)
T ss_dssp             TSCEEECCCTTEESTTSCEECTTCCSSCCCCCCSSCCCCCCCCCGGGSCSCEEECHHHHHHSSCCEEECSCTTTEESTTS
T ss_pred             CCCeeeeCcCCCcCCCcccCCCCCcCCCCCCCccCCCCCCCCCcCcCCCCCcccccccCccCCCCCCCCCCCCCCcCCCC
Confidence            3678999999999999986444333333                21 12 2321       1245678 49999999999


Q ss_pred             ccc
Q psy9228         212 EQK  214 (834)
Q Consensus       212 e~~  214 (834)
                      |.-
T Consensus       349 e~C  351 (375)
T 4aqt_A          349 ERC  351 (375)
T ss_dssp             CEE
T ss_pred             CCC
Confidence            863

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=94.73  E-value=0.019  Score=62.92  Aligned_cols=42  Identities=19%  Similarity=0.339  Sum_probs=33.4

Q ss_pred             CcEEEEecCC-CCCccc------------cCCCeEEEcccCCCCCeeEEEEEcCC
Q psy9228           2 AYIKWSRADG-LPLQRY------------AEGNVLRITNARLQDSGKYKCEIQGH   43 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~------------~~~~~l~~~~~~~~d~g~y~c~~~~~   43 (834)
                      ++|+|.|.+. |+....            .....|.|.+|+.+|+|.|+|.+.|.
T Consensus       258 p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~  312 (423)
T 3qs7_E          258 FGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH  312 (423)
T ss_dssp             CCEEEEESSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTE
T ss_pred             cEEEEEECCEEccccceeecccccCCceeEEEEEEEEeecCHHHCEEEEEEEecC
Confidence            5799999777 766421            12347999999999999999999766

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=94.69  E-value=0.017  Score=56.31  Aligned_cols=26  Identities=27%  Similarity=0.597  Sum_probs=22.3

Q ss_pred             CCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228          20 GNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus        20 ~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      +..|+|.+|+.+|+|.|.|.+.+..+
T Consensus        82 ~~sL~I~~v~~~D~G~Y~C~~~~~~~  107 (225)
T 4fmk_A           82 DATLAFRGLRVEDEGNYTCEFATFPN  107 (225)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEEETT
T ss_pred             cEEEEEccCCHHHCcceEEEEEeCCC
Confidence            46799999999999999999965543

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=94.68  E-value=0.017  Score=54.45  Aligned_cols=44  Identities=16%  Similarity=0.393  Sum_probs=34.4

Q ss_pred             CcEEEEecCC-CCCcccc----C----CCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA----E----GNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~----~----~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      +.|.|.|.+. |+...+.    .    ...|.|.+++.+|+|.|.|.+.+..+
T Consensus        32 ~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~   84 (182)
T 1rhf_A           32 PDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGE   84 (182)
T ss_dssp             CCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTT
T ss_pred             CeEEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEEcCCC
Confidence            4799999665 7765433    1    26899999999999999999987643

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=94.68  E-value=0.023  Score=54.27  Aligned_cols=44  Identities=18%  Similarity=0.311  Sum_probs=33.3

Q ss_pred             CcEEEEecCC-CCCcc-cc-----CCC--eEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQR-YA-----EGN--VLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~-~~-----~~~--~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .+|.|.|.+. +.... +.     .++  .|+|.+|+.+|+|.|.|.+.+..+
T Consensus        34 ~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g   86 (197)
T 2j8h_A           34 PIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGG   86 (197)
T ss_dssp             CEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEEEETTE
T ss_pred             CEEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEEEECCC
Confidence            4799999666 65432 11     233  899999999999999999976654

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=94.67  E-value=0.013  Score=56.61  Aligned_cols=42  Identities=14%  Similarity=0.075  Sum_probs=32.2

Q ss_pred             CcEEEEecCC-CCCcc-------ccCCCeEEEcccCCCCCeeEEEEEcCC
Q psy9228           2 AYIKWSRADG-LPLQR-------YAEGNVLRITNARLQDSGKYKCEIQGH   43 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~-------~~~~~~l~~~~~~~~d~g~y~c~~~~~   43 (834)
                      ..|.|.|.+. ++...       ...++.|.|.+|+.+|+|.|.|.+.+.
T Consensus        36 ~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~~~   85 (201)
T 1nkr_A           36 EHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVT   85 (201)
T ss_dssp             SEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBT
T ss_pred             CEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeEecC
Confidence            4799999766 64321       124578999999999999999999643

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}

Probab=94.66  E-value=0.016  Score=52.81  Aligned_cols=24  Identities=33%  Similarity=0.580  Sum_probs=22.2

Q ss_pred             CCeEEEcccCCCCCeeEEEEEcCC
Q psy9228          20 GNVLRITNARLQDSGKYKCEIQGH   43 (834)
Q Consensus        20 ~~~l~~~~~~~~d~g~y~c~~~~~   43 (834)
                      +..|+|.+|+.+|+|.|.|.+.+.
T Consensus       102 ~~~L~I~~v~~~DsG~Y~C~~~n~  125 (145)
T 1z9m_A          102 ELSISISNVALADEGEYTCSIFTM  125 (145)
T ss_dssp             EEEEEECSCCGGGCEEEEEEECSS
T ss_pred             eEEEEECCCChhhCEEEEEEEEcC
Confidence            468999999999999999999876

>1ob1_C Major merozoite surface protein; immune system, immunoglobulin/complex, immunoglobulin, antib fragment, MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum} SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A

Probab=94.61  E-value=0.042  Score=45.03  Aligned_cols=69  Identities=23%  Similarity=0.614  Sum_probs=51.7

Q ss_pred             CCCCCCCCCCCeecccCCCCCceeeecCCCCC--CCCCccCc-cCCCCC-CccCCCceeeecC-----CCcEEcCCCCCC
Q psy9228         570 VCAPKPCQNYGICYPTDTSERGYNCSCLTGYS--GDHCEKEN-NMCMKG-DVCKNGGMCKVTP-----DSYECLCSLGYA  640 (834)
Q Consensus       570 ~C~~~pC~ngg~C~~~~~~~~~~~C~C~~G~~--G~~Ce~~~-~~C~~~-~pC~ngg~C~~~~-----~~~~C~C~~g~~  640 (834)
                      .|..+-|...+.|.....  +..+|.|.+||.  |..|.... ++|..+ --|...+.|....     +...|.|.+||+
T Consensus         6 ~C~~~~C~~NA~C~r~~~--g~e~C~C~~gy~gdg~~Cv~~~~~sC~~nNGGCd~nA~C~~~~~~~~~~ki~C~C~~g~~   83 (99)
T 1ob1_C            6 QCVKKQCPQNSGCFRHLD--EREECKCLLNYKQEGDKCVENPNPTCNENNGGCDADAKCTEEDSGSNGKKITCECTKPDS   83 (99)
T ss_dssp             CCCSCCCCTTEEEECCTT--SCCEEEECTTEEEETTEEEECSCCCSTTGGGGCCTTEEEECCSCSSSSCCCEEEECSTTC
T ss_pred             EeccCCCCCCCCeEEcCC--CCEEEEecCCeecCCCeEeeCCCCChhhcCCCcCCCceeEecCCcccCCceEeEeCCCCc
Confidence            466666777889976543  489999999998  45777764 577654 1477788998764     679999999865

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=94.61  E-value=0.022  Score=55.36  Aligned_cols=44  Identities=30%  Similarity=0.566  Sum_probs=34.0

Q ss_pred             CcEEEEecCC-CCCcccc-------CCCeEEEcccC-CCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA-------EGNVLRITNAR-LQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~-------~~~~l~~~~~~-~~d~g~y~c~~~~~~~   45 (834)
                      .+|.|.|.+. |...+..       .+..|+|.+|+ .+|+|.|.|.+.+..+
T Consensus        36 ~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~n~~g   88 (212)
T 2yd6_A           36 PKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVG   88 (212)
T ss_dssp             CEEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEEEEETTE
T ss_pred             CEEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEEEEEcCCC
Confidence            4799999666 7664432       24579999995 9999999999986654

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=94.58  E-value=0.027  Score=60.49  Aligned_cols=44  Identities=30%  Similarity=0.621  Sum_probs=37.7

Q ss_pred             CcEEEEecCC-CCCccccCCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYAEGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|.|.|.++ ++......+..|.|.+++.+|+|.|.|.+.+..+
T Consensus       237 ~~i~W~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g  281 (382)
T 1cs6_A          237 PQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKG  281 (382)
T ss_dssp             CEEEEEECCSCCSCCCSBSSSEEEECSCCGGGCEEEEEEEEETTE
T ss_pred             CEEEEEECCcccccEEecCCcEEEEccCChhhCEEEEEEEEcCCC
Confidence            4799999888 8875555788999999999999999999987654

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=94.56  E-value=0.016  Score=55.41  Aligned_cols=42  Identities=12%  Similarity=0.177  Sum_probs=32.1

Q ss_pred             CcEEEEecCC-CCCcc-----ccCCCeEEEcccCCCCCeeEEEEEcCC
Q psy9228           2 AYIKWSRADG-LPLQR-----YAEGNVLRITNARLQDSGKYKCEIQGH   43 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~-----~~~~~~l~~~~~~~~d~g~y~c~~~~~   43 (834)
                      ..+.|.|.+. ++...     ...++.|.|.+|+.+|+|.|.|.+.+.
T Consensus        32 ~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~   79 (188)
T 1oll_A           32 VEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVG   79 (188)
T ss_dssp             CEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CEEEEEECCCcccccccccCCCcceeEEEeCcCCcccCeEEEEEecCC
Confidence            3689999665 65321     124678999999999999999999654

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=94.55  E-value=0.021  Score=54.92  Aligned_cols=44  Identities=18%  Similarity=0.390  Sum_probs=31.9

Q ss_pred             CcEEEEecCC-CCC-cccc---------CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPL-QRYA---------EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~-~~~~---------~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ..|.|.|.++ ++. ..+.         .+..|+|.+|+.+|+|.|.|.+.+..+
T Consensus        37 ~~v~W~k~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~   91 (202)
T 3bp6_B           37 IRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLVICGAA   91 (202)
T ss_dssp             EEEEEEECC--CCCBCSSCEECGGGGGGTEEEEEECSCCGGGCEEEEEEEEETTE
T ss_pred             eEEEEEcCCCcccccCCceEEeeccccCCeeEEEECCCCHHHCcEEEEEEEeCCC
Confidence            4699999555 433 2121         236899999999999999999976654

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=94.54  E-value=0.022  Score=55.97  Aligned_cols=44  Identities=14%  Similarity=0.351  Sum_probs=34.5

Q ss_pred             CcEEEEecCC-CCCcccc-------CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA-------EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~-------~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.+. |....+.       .+..|+|.+++.+|+|.|.|.+.+..+
T Consensus        49 ~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~  100 (231)
T 3ojm_B           49 PTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYG  100 (231)
T ss_dssp             CEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTE
T ss_pred             CeEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEEEEEecccC
Confidence            4799999665 7664433       245899999999999999999976654

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=94.53  E-value=0.023  Score=58.83  Aligned_cols=44  Identities=18%  Similarity=0.410  Sum_probs=34.9

Q ss_pred             CcEEEEecCC-CCCcccc----CC--CeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA----EG--NVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~----~~--~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.+. |+...+.    .+  ..|+|.+++.+|+|.|.|.+.+..+
T Consensus        32 ~~v~W~k~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g   82 (312)
T 2y23_A           32 SEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDG   82 (312)
T ss_dssp             CCEEEEETTEECTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCC
T ss_pred             cEEEEEECCEECCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCC
Confidence            5899999666 7754333    22  5899999999999999999987665

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=94.53  E-value=0.013  Score=56.96  Aligned_cols=40  Identities=20%  Similarity=0.291  Sum_probs=31.8

Q ss_pred             CcEEEEecCC-CCCccccCCCeEEEcccCCCCCeeEEEEEcCC
Q psy9228           2 AYIKWSRADG-LPLQRYAEGNVLRITNARLQDSGKYKCEIQGH   43 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~~~~~l~~~~~~~~d~g~y~c~~~~~   43 (834)
                      .+|.|.|++. +..  ...+..|.|.+|+.+|+|.|.|.+.|.
T Consensus       119 ~~v~W~k~g~~~~~--~~~~~~L~i~~v~~~D~G~Y~C~a~n~  159 (204)
T 3sgj_C          119 HKVTYLQNGKGRKY--FHHNSDFYIPKATLKDSGSYFCRGLVG  159 (204)
T ss_dssp             EEEEEEETTEEEEE--EEECCCEEESSCCGGGCEEEEEEEEET
T ss_pred             ceEEEEECCcEeec--ccCCceEEECcCCcccCEEEEEEEEeC
Confidence            3699999555 532  224678999999999999999999874

>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A*

Probab=94.53  E-value=0.034  Score=47.31  Aligned_cols=25  Identities=40%  Similarity=0.502  Sum_probs=22.3

Q ss_pred             CeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228          21 NVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus        21 ~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ..|+|.+|+.+|+|.|.|.+.+..+
T Consensus        72 ~sL~I~~v~~~D~G~Y~C~v~~~~~   96 (109)
T 2oyp_A           72 VSLIIKNVTLDDHGTYCCRIQFPGL   96 (109)
T ss_dssp             CCEEECSCCGGGCEEEEEEECCSST
T ss_pred             EeEEEccCCChhCeEEEEEEEcCCc
Confidence            5899999999999999999987654

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=94.52  E-value=0.026  Score=58.61  Aligned_cols=44  Identities=18%  Similarity=0.312  Sum_probs=34.9

Q ss_pred             CcEEEEecCC-CCCcccc----CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA----EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~----~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .+|+|.|.+. |+...+.    ....|+|.+++.+|+|.|.|.+.+..+
T Consensus        37 ~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g   85 (317)
T 2y25_A           37 THIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRG   85 (317)
T ss_dssp             CEEEEEETTEEECCSCC-----CCEEEEETTCCSTTCSCEEEEEESSSC
T ss_pred             CEEEEEECCeEcCCCCcEEEECCeEEEEEccCCcccCeEEEEEEECCCC
Confidence            4799999666 7754433    245999999999999999999987654

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=94.51  E-value=0.014  Score=56.77  Aligned_cols=25  Identities=24%  Similarity=0.511  Sum_probs=22.2

Q ss_pred             CeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228          21 NVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus        21 ~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ..|+|.+|+.+|+|.|.|.+.|..+
T Consensus        69 ~~L~I~~v~~~D~G~Y~C~a~n~~g   93 (203)
T 4fa8_A           69 FFLVVTAANISHDGNYLCRMKLGET   93 (203)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             EEEEEccCCHHHCeEEEEEEEcCCC
Confidence            4799999999999999999987654

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=94.48  E-value=0.026  Score=53.43  Aligned_cols=43  Identities=26%  Similarity=0.406  Sum_probs=30.6

Q ss_pred             CcEEEEecCC-CCCc--cc-c--CCCeEEEcccCCCCCeeEEEEEcCCC
Q psy9228           2 AYIKWSRADG-LPLQ--RY-A--EGNVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~--~~-~--~~~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      ..+.|.|.+. ++..  .+ .  .++.|+|.+++.+|+|.|.|.+.+..
T Consensus        32 ~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~   80 (189)
T 2v5t_A           32 PAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEA   80 (189)
T ss_dssp             CEEEEEC-----CBCCCTTEEECTTSCEEETTCCGGGCEEEEEEEEETT
T ss_pred             CEEEEEECCccceeccCCeEEEecCCCEEEeeCCHhHCcEEEEEEEEcC
Confidence            4799999766 5531  11 1  46789999999999999999997654

>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=94.45  E-value=0.0084  Score=56.45  Aligned_cols=46  Identities=22%  Similarity=0.626  Sum_probs=37.3

Q ss_pred             CCCCCCCCccCccCCCCCC----ccCCCceeeecCCCcEEcCCCCCC----CCCcc
Q psy9228         598 TGYSGDHCEKENNMCMKGD----VCKNGGMCKVTPDSYECLCSLGYA----PPNCA  645 (834)
Q Consensus       598 ~G~~G~~Ce~~~~~C~~~~----pC~ngg~C~~~~~~~~C~C~~g~~----G~~Ce  645 (834)
                      .||.+..+..++++|....    +|.+  .|++..++|.|.|++||.    |..|+
T Consensus       113 ~Gf~~~~~~~di~eC~~~~~~~~~C~~--~C~n~~g~~~C~C~~Gy~l~~d~~~C~  166 (170)
T 1szb_A          113 TGFEAFYAAEDIDECQVAPGEAPTCDH--HCHNHLGGFYCSCRAGYVLHRNKRTCS  166 (170)
T ss_dssp             CEEEEEEEEEECCTTCCCTTSCCSSSS--EEEEETTEEEEECCTTEEECTTSSCEE
T ss_pred             cCceeeeeccccCcccCCCCCCCccCC--ccccCCCCEEEeCCCCcEECCCCCccc
Confidence            5677777777888997651    2876  799999999999999997    67775

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=94.44  E-value=0.025  Score=59.47  Aligned_cols=42  Identities=31%  Similarity=0.595  Sum_probs=34.0

Q ss_pred             CcEEEEecCC-CCCcccc---CCCeEEEcccCCCCCeeEEEEEcCC
Q psy9228           2 AYIKWSRADG-LPLQRYA---EGNVLRITNARLQDSGKYKCEIQGH   43 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~---~~~~l~~~~~~~~d~g~y~c~~~~~   43 (834)
                      ++|+|.|.+. |+.....   .++.|.|.+|+.+|+|.|.|.+.|.
T Consensus       159 ~~i~W~k~~~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~  204 (329)
T 3oq3_B          159 NNITWYKNNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYD  204 (329)
T ss_dssp             CEEEEEETTEECCCSSSSEEEETTEEEECSCCGGGCEEEEEEEEEC
T ss_pred             ceEEEEECCccCCCCCceEecCCCEEEEeecChhhCEEEEEEEEec
Confidence            5899999776 7532211   4789999999999999999999875

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=94.43  E-value=0.02  Score=55.41  Aligned_cols=44  Identities=11%  Similarity=0.267  Sum_probs=32.1

Q ss_pred             CcEEEEecCC--CCCcccc--CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG--LPLQRYA--EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~--~~~~~~~--~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .+|.|.|..+  +......  .+..|+|.+|+.+|+|.|.|.+.+..+
T Consensus        31 p~i~W~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~   78 (202)
T 1vca_A           31 PFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESR   78 (202)
T ss_dssp             CEEEEEETTCCCCSSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTE
T ss_pred             CeEEEECCCCCCccceEEEcCCccEEEECcCCHHHCEEEEEEEEECCc
Confidence            3699999444  3332222  345799999999999999999976643

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=94.39  E-value=0.015  Score=58.19  Aligned_cols=42  Identities=12%  Similarity=0.109  Sum_probs=33.3

Q ss_pred             CcEEEEecCC-CCCccc--cCCCeEEEcccCCCCCeeEEEEEcCC
Q psy9228           2 AYIKWSRADG-LPLQRY--AEGNVLRITNARLQDSGKYKCEIQGH   43 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~--~~~~~l~~~~~~~~d~g~y~c~~~~~   43 (834)
                      .++.|.|++. ++....  ..+..|.|.+|+.+|+|.|.|.+.+.
T Consensus       130 ~~~~w~k~g~~~~~~~~~~~~~~~l~I~~v~~~d~G~Y~C~a~n~  174 (242)
T 1p6f_A          130 SMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYN  174 (242)
T ss_dssp             SEEEEEECSSSCEEEEEECSSEEEEEEEECCGGGCEEEEEEEEEE
T ss_pred             CEEEEEECCCccCccccCCCceEEEEeCCCccccCEEEEEEEECC
Confidence            3689999766 765322  24678999999999999999999764

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=94.38  E-value=0.022  Score=59.83  Aligned_cols=44  Identities=20%  Similarity=0.401  Sum_probs=36.1

Q ss_pred             CcEEEEecCC-CCC-ccccCCCeEEEcccCCCCCe-eEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPL-QRYAEGNVLRITNARLQDSG-KYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~-~~~~~~~~l~~~~~~~~d~g-~y~c~~~~~~~   45 (834)
                      ++|+|.|.+. ++. .+...++.|.|.+|+.+|+| .|.|.+.+..+
T Consensus        68 ~~v~W~k~~~~~~~~~~~~~~~~L~i~~v~~~D~Gs~Y~C~a~n~~g  114 (329)
T 3oq3_B           68 NVVNWEKIGKTRRPLNRRVKNGDLWIANYTSNDSHRRYLCTVTTKNG  114 (329)
T ss_dssp             CEEEEEECSSSCEECSTTEETTEEEESSCCGGGGGCCEEEEEECTTS
T ss_pred             CeeEEEECCCCccccCceeecceEEEcCCChHhCCCcEEEEEEeCCC
Confidence            4799999776 654 33346889999999999999 89999987764

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=94.38  E-value=0.026  Score=53.67  Aligned_cols=44  Identities=16%  Similarity=0.289  Sum_probs=33.5

Q ss_pred             CcEEEEecCC-CCCcc----cc--C--CCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQR----YA--E--GNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~----~~--~--~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.+. |+...    +.  .  ...|+|.+++.+|+|.|.|.+.+..+
T Consensus        35 ~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~   87 (194)
T 2a38_A           35 PEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSG   87 (194)
T ss_dssp             CEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEEEEcCCc
Confidence            4799999666 66543    11  2  34899999999999999999976554

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=94.37  E-value=0.023  Score=54.02  Aligned_cols=43  Identities=33%  Similarity=0.645  Sum_probs=32.8

Q ss_pred             CcEEEEecCC--CCCc-cc-------cCCCeEEEcccCCCCCeeEEEEEcCCC
Q psy9228           2 AYIKWSRADG--LPLQ-RY-------AEGNVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus         2 ~~~~w~~~~~--~~~~-~~-------~~~~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      ..|.|.|.+|  +... .+       ..+..|+|.+++.+|+|.|.|.+.+..
T Consensus        33 ~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~   85 (191)
T 1epf_A           33 KDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAED   85 (191)
T ss_dssp             CEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             ceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEEEEcCC
Confidence            4799999555  5432 21       134689999999999999999997665

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=94.35  E-value=0.026  Score=55.51  Aligned_cols=44  Identities=18%  Similarity=0.261  Sum_probs=28.5

Q ss_pred             CcEEEEecCC--CCCcccc----CCCe---EEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG--LPLQRYA----EGNV---LRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~--~~~~~~~----~~~~---l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.+|  ++.....    .++.   +.+-+|+.+|+|.|+|.++|.-+
T Consensus       149 p~i~W~k~~~~~~~~~~~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g  201 (226)
T 4f80_A          149 PQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLL  201 (226)
T ss_dssp             CEEEEECTTSCBCCCEECCCEECTTSCEEEEEEEEECC----CEEEEEEETTT
T ss_pred             CEEEEEECCceEcCCCceEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCC
Confidence            5899999877  6664443    2333   34457899999999999988765

>4gjt_B Poliovirus receptor-related protein 4; six-bladed -propeller, IGV-like fold, viral entry, MV-H, NEC BETA4/BETA5 groove; HET: NAG; 3.10A {Homo sapiens}

Probab=94.32  E-value=0.039  Score=48.47  Aligned_cols=22  Identities=27%  Similarity=0.604  Sum_probs=19.7

Q ss_pred             CeEEEcccCCCCCeeEEEEEcC
Q psy9228          21 NVLRITNARLQDSGKYKCEIQG   42 (834)
Q Consensus        21 ~~l~~~~~~~~d~g~y~c~~~~   42 (834)
                      ..|+|.||+.+|+|.|.|...+
T Consensus        80 ~sL~I~~v~~~DsG~Y~C~v~t  101 (123)
T 4gjt_B           80 GSVLLRNAVQADEGEYECRVST  101 (123)
T ss_dssp             CCEEEESCCSSSCSEEEEEEEE
T ss_pred             EEEEECCCChHHCEEEEEEEEE
Confidence            4699999999999999998753

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=94.28  E-value=0.026  Score=58.87  Aligned_cols=42  Identities=10%  Similarity=0.062  Sum_probs=33.5

Q ss_pred             CcEEEEecCC-CCCccc--cCCCeEEEcccCCCCCeeEEEEEcCC
Q psy9228           2 AYIKWSRADG-LPLQRY--AEGNVLRITNARLQDSGKYKCEIQGH   43 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~--~~~~~l~~~~~~~~d~g~y~c~~~~~   43 (834)
                      ..+.|.|.+. ++....  ..++.|.|.+|+.+|+|.|.|.+.+.
T Consensus        52 ~~~~W~k~g~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~   96 (316)
T 3vh8_G           52 NNFMLYKEDRIHIPIFHGRIFQESFNMSPVTTAHAGNYTCRGSHP   96 (316)
T ss_dssp             CSEEEEESSCSSSCHHHHCCBSSCEEECSCCGGGCEEEEEEEBCS
T ss_pred             ceEEEEeCCCccceeecCCcceEEEEECCCCcccCeEEEEEEEcC
Confidence            4789999766 554322  25789999999999999999999754

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=94.23  E-value=0.028  Score=55.79  Aligned_cols=44  Identities=16%  Similarity=0.312  Sum_probs=34.5

Q ss_pred             CcEEEEecCC-CCCcccc-------CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA-------EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~-------~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|.|.|.+. |......       .+..|.|.+++.+|+|.|.|.+.+..+
T Consensus        45 ~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~   96 (241)
T 3grw_A           45 PSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFG   96 (241)
T ss_dssp             CEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTE
T ss_pred             ceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEEEEeecCC
Confidence            4799999666 7654433       356899999999999999999976544

>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus}

Probab=94.22  E-value=0.058  Score=46.54  Aligned_cols=26  Identities=31%  Similarity=0.376  Sum_probs=22.3

Q ss_pred             CCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228          20 GNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus        20 ~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ...|+|.+|+.+|+|.|.|.+.+..+
T Consensus        72 ~~sL~I~~v~~~DsG~Y~C~v~~~~~   97 (116)
T 2or8_A           72 DVSLTIENSVESDSGLYCCRVEIPGW   97 (116)
T ss_dssp             BCCEEESSCCGGGCEEEEEEECCSST
T ss_pred             eEEEEECCCCcccCEEEEEEEEcCCc
Confidence            35799999999999999999976543

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=94.21  E-value=0.023  Score=55.91  Aligned_cols=25  Identities=48%  Similarity=0.672  Sum_probs=22.1

Q ss_pred             CeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228          21 NVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus        21 ~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ..|+|.+|+.+|+|.|.|.+.+..+
T Consensus        83 ~~L~I~~v~~~D~G~Y~C~a~n~~~  107 (226)
T 4f80_A           83 AALRIHNVTASDSGKYLCYFQDGDF  107 (226)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             EEEEEeeCchHHCeeEEEEEECCCc
Confidence            4799999999999999999976654

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=94.20  E-value=0.025  Score=54.04  Aligned_cols=44  Identities=32%  Similarity=0.531  Sum_probs=33.7

Q ss_pred             CcEEEEecCC-CCCccc----c---C--------CCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRY----A---E--------GNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~----~---~--------~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .+|.|.|.+. |.....    .   .        ...|+|.+++.+|+|.|.|.+.+..+
T Consensus        33 ~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~   92 (195)
T 2c5d_C           33 PEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQ   92 (195)
T ss_dssp             CCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCEEEEEEEEETTE
T ss_pred             cEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCcEEEEEEEeCCC
Confidence            4789999655 766521    1   1        35899999999999999999976543

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens}

Probab=94.19  E-value=0.032  Score=48.14  Aligned_cols=23  Identities=30%  Similarity=0.621  Sum_probs=21.2

Q ss_pred             CCeEEEcccCCCCCeeEEEEEcC
Q psy9228          20 GNVLRITNARLQDSGKYKCEIQG   42 (834)
Q Consensus        20 ~~~l~~~~~~~~d~g~y~c~~~~   42 (834)
                      +..|+|.+|+.+|+|.|.|.+.+
T Consensus        78 ~~sL~I~~v~~~D~G~Y~C~v~~  100 (118)
T 3udw_C           78 NASLRMFGLRVEDEGNYTCLFVT  100 (118)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEE
T ss_pred             CcEEEEeecChHHCeEEEEEEEE
Confidence            56899999999999999999975

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=94.07  E-value=0.028  Score=59.47  Aligned_cols=43  Identities=21%  Similarity=0.318  Sum_probs=34.4

Q ss_pred             CcEEEEecCC-CCCcccc--CCCeEEEcccCCCCCeeEEEEEcCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA--EGNVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~--~~~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      ++|+|.|.+. |+.....  .+..|.|.+|+.+|+|.|.|.+.+..
T Consensus       155 ~~v~W~k~~~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~  200 (349)
T 4dep_C          155 PTITWYMGCYKIQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPE  200 (349)
T ss_dssp             CEEEEEETTEECCSCSSEEEETTEEEEESCCGGGCEEEEEEEEEEE
T ss_pred             ceEEEeeCCEECCCccceeecCCEEEEeeeeecCCcEEEEEEEEee
Confidence            4799999655 7653333  46789999999999999999997654

>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1

Probab=94.07  E-value=0.042  Score=46.94  Aligned_cols=24  Identities=21%  Similarity=0.375  Sum_probs=21.3

Q ss_pred             CeEEEcccCCCCCeeEEEEEcCCC
Q psy9228          21 NVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus        21 ~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      ..|+|.+|+.+|+|+|.|.+.+..
T Consensus        71 ~~L~I~~v~~~DsG~Y~C~~~~~~   94 (108)
T 1qfw_M           71 FTLTISSVQAEDFADYHCGQTYNH   94 (108)
T ss_dssp             EEEEESSCCTTCCSEEEEEECSSS
T ss_pred             EEEEECCCChhhCEEEEEEEccCC
Confidence            379999999999999999997653

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=94.07  E-value=0.038  Score=56.56  Aligned_cols=44  Identities=32%  Similarity=0.629  Sum_probs=34.1

Q ss_pred             CcEEEEecCC--CCCcc-cc-------CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG--LPLQR-YA-------EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~--~~~~~-~~-------~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .+|+|.|.+|  |+... +.       ....|+|.+++.+|+|.|.|.+.+..+
T Consensus        33 ~~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g   86 (291)
T 1qz1_A           33 KDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDG   86 (291)
T ss_dssp             CEEEEECTTSCBCCSSCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEECTTS
T ss_pred             cEeEEECCCCeECccCCceEEEEEcCCCeEEEEEecCCCCCCEEEEEEEEcCCC
Confidence            5799999666  65432 11       246899999999999999999987764

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B

Probab=94.06  E-value=0.032  Score=48.70  Aligned_cols=25  Identities=28%  Similarity=0.663  Sum_probs=22.2

Q ss_pred             CeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228          21 NVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus        21 ~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ..|+|.+|+.+|+|.|.|.+.+..+
T Consensus        89 ~sL~I~~v~~~D~G~Y~C~v~~~~~  113 (126)
T 1eaj_A           89 ASINVTNLQLSDIGTYQCKVKKAPG  113 (126)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEETTE
T ss_pred             EEEEECcCChHHCeEEEEEEEcCCc
Confidence            6799999999999999999976543

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=94.06  E-value=0.03  Score=52.58  Aligned_cols=27  Identities=22%  Similarity=0.235  Sum_probs=23.6

Q ss_pred             CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228          19 EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus        19 ~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .++.|+|.+|+.+|+|.|.|.+.+..+
T Consensus        58 ~~~sL~I~~v~~~DsG~Y~C~~~n~~~   84 (171)
T 1ccz_A           58 VSGSLTIYNLTSSDEDEYEMESPNITD   84 (171)
T ss_dssp             TTCCEEECSCCGGGCEEEEEECTTCCS
T ss_pred             CCCeEEECCCChhhCceEEEEEeCCCC
Confidence            468999999999999999999976544

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=94.01  E-value=0.035  Score=56.09  Aligned_cols=27  Identities=19%  Similarity=0.426  Sum_probs=23.8

Q ss_pred             CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228          19 EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus        19 ~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .+..|.|.+|+.+|+|.|.|.+.|..+
T Consensus       199 ~~~~L~i~~v~~~D~G~Y~C~a~n~~g  225 (268)
T 3mj6_A          199 NDGSIKLQTVKESDQGIYTCSIYVGKL  225 (268)
T ss_dssp             TBCCEEECSCCGGGCEEEEEEEEETTE
T ss_pred             CeEEEEECcCChhhCeEEEEEEEcCCc
Confidence            367999999999999999999987654

>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response, immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1h5b_C 1h5b_B

Probab=93.99  E-value=0.044  Score=47.22  Aligned_cols=23  Identities=39%  Similarity=0.746  Sum_probs=21.4

Q ss_pred             eEEEcccCCCCCeeEEEEEcCCC
Q psy9228          22 VLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus        22 ~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      .|+|.+|+.+|+|.|.|.+.+..
T Consensus        72 ~L~I~~v~~~DsG~Y~C~~~n~~   94 (113)
T 1h5b_A           72 TLHIRDAQLEDSGTYFCAAEASS   94 (113)
T ss_dssp             EEEECSCCGGGCEEEEEEEECSS
T ss_pred             EEEECCCChhhCEEEEEEEecCC
Confidence            89999999999999999998764

>1mqk_L Antibody 7E2 FV fragment, light chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_D 3ehb_D* 3hb3_D* 1qle_L* 1f6l_L 3iy2_A 1vfa_A 1dvf_A 1kir_A 1g7i_A 1g7j_A 1a2y_A 1kip_A 1kiq_A 1vfb_A 1g7h_A 1a7o_L 1g7l_A 1g7m_A 1a7n_L ...

Probab=93.96  E-value=0.075  Score=46.41  Aligned_cols=24  Identities=25%  Similarity=0.350  Sum_probs=21.4

Q ss_pred             CeEEEcccCCCCCeeEEEEEcCCC
Q psy9228          21 NVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus        21 ~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      ..|+|.+|+.+|+|+|.|.+.+..
T Consensus        71 ~~L~I~~v~~~DsG~Y~C~~~~~~   94 (120)
T 1mqk_L           71 FSLKINSLLPEDFGSYYCQHHYGT   94 (120)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSSS
T ss_pred             EEEEECCCCHHHCEEEEEEEEeCC
Confidence            479999999999999999997653

>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1

Probab=93.94  E-value=0.013  Score=42.30  Aligned_cols=34  Identities=24%  Similarity=0.677  Sum_probs=24.4

Q ss_pred             CCCCCCCCEeccCCCCCceEeeCCCCCC----CCCCCCCCCCc
Q psy9228         143 HNNCINNGLCQDAATRIGYTCICPPGFS----GDRCSVLGEPC  181 (834)
Q Consensus       143 ~~pC~n~g~C~~~~~~~~~~C~C~~g~~----G~~Ce~~~~~C  181 (834)
                      ..+|.+  .|++.+  ++|+|.|++||.    |..| .++|+|
T Consensus         5 ng~C~~--~C~n~~--gs~~C~C~~Gy~L~~d~~tC-~dide~   42 (51)
T 1kig_L            5 NGGCDQ--FCREER--SEVRCSCAHGYVLGDDSKSC-VSTERF   42 (51)
T ss_dssp             TTSSSS--CCCEET--TEECCCCCTTEEECTTSSCE-EECSSS
T ss_pred             CCCcCC--EeEcCC--CCeEEeCCCCcEECCCCCcc-ccCCcc
Confidence            345765  588776  889999999995    6777 355565

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A

Probab=93.94  E-value=0.03  Score=48.81  Aligned_cols=22  Identities=27%  Similarity=0.557  Sum_probs=20.3

Q ss_pred             CCeEEEcccCCCCCeeEEEEEc
Q psy9228          20 GNVLRITNARLQDSGKYKCEIQ   41 (834)
Q Consensus        20 ~~~l~~~~~~~~d~g~y~c~~~   41 (834)
                      +..|+|.+|+.+|+|.|.|...
T Consensus        70 ~~sL~I~~v~~~D~G~Y~C~v~   91 (117)
T 3q0h_A           70 GLGLTLQSLTVNDTGEYFCIYH   91 (117)
T ss_dssp             TTCEEECSCCGGGCEEEEEEEE
T ss_pred             ceEEEEeeCChhhCEEEEEEEE
Confidence            5789999999999999999974

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=93.93  E-value=0.029  Score=63.38  Aligned_cols=44  Identities=14%  Similarity=0.308  Sum_probs=35.8

Q ss_pred             CcEEEEecCC-CCCccc--cCCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRY--AEGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~--~~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.+. |+...+  ..+..|.|.+|+.+|+|.|+|.+.|..+
T Consensus       356 p~i~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~g  402 (527)
T 3qs9_E          356 IRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDA  402 (527)
T ss_dssp             CEEEEEETTEEEECBCCBCSSSSEEEEECCCTTCCSCEEEEEEETTE
T ss_pred             CEEEEEECCEECcCCcccccCCcEEEEecCCcccCEEEEEEEEeCCC
Confidence            4799999665 765443  2577999999999999999999987765

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=93.89  E-value=0.04  Score=60.35  Aligned_cols=44  Identities=18%  Similarity=0.163  Sum_probs=33.2

Q ss_pred             CcEEEEecCC-CCCccccC-C----CeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYAE-G----NVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~~-~----~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .+|+|.|.++ |+...... +    ..|.|.+|+.+|+|.|+|.+.|..+
T Consensus        78 p~i~W~~~~~~l~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~g  127 (423)
T 3qs7_E           78 ISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEAT  127 (423)
T ss_dssp             CEEEEEETTEEECCCCBC-----CEEEEEESSCCSSSCSEEEEEEEC--C
T ss_pred             CeEEEEECCCccCccceeccccceEEEEEEeecCcccCEEEEEEEEcCCC
Confidence            4789999777 87644442 1    3699999999999999999988765

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=93.88  E-value=0.028  Score=54.26  Aligned_cols=44  Identities=14%  Similarity=0.374  Sum_probs=32.7

Q ss_pred             CcEEEEecCC-CC--------------CccccCCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LP--------------LQRYAEGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~--------------~~~~~~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ..|.|.|.+. ++              ......+..|+|.+|+.+|+|.|.|.+.+..+
T Consensus        31 ~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~g   89 (212)
T 1f97_A           31 PRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSEEGG   89 (212)
T ss_dssp             EEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEEEEEEETTS
T ss_pred             cEEEEEECCCceeeEEecCCcccccccCcEEeeceeEEEcccCcccCeEEEEEEEccCC
Confidence            4789999665 31              11222468999999999999999999976543

>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A*

Probab=93.86  E-value=0.042  Score=49.16  Aligned_cols=23  Identities=30%  Similarity=0.577  Sum_probs=21.1

Q ss_pred             eEEEcccCCCCCeeEEEEEcCCC
Q psy9228          22 VLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus        22 ~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      .|+|.+|+.+|+|+|.|.+.+..
T Consensus        78 ~L~I~~~~~~DsG~Y~C~a~n~~  100 (133)
T 3khq_A           78 TLTIQNIQYEDNGIYFCKQKCDS  100 (133)
T ss_dssp             EEEECSCCGGGCEEEEEEESSCC
T ss_pred             EEEECCCChHHCEEEEEEEEeCC
Confidence            59999999999999999997764

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=93.85  E-value=0.025  Score=53.09  Aligned_cols=37  Identities=22%  Similarity=0.506  Sum_probs=30.3

Q ss_pred             cEEEEecCC-CCCccccCCCeEEEcccCCCCCeeEEEEEcCC
Q psy9228           3 YIKWSRADG-LPLQRYAEGNVLRITNARLQDSGKYKCEIQGH   43 (834)
Q Consensus         3 ~~~w~~~~~-~~~~~~~~~~~l~~~~~~~~d~g~y~c~~~~~   43 (834)
                      .++|.|.+. |+.    .+..|+|.+|+.+|+|.|.|.+.+.
T Consensus        39 ~~~W~~~~~~~~~----~~~~L~i~~~~~~d~G~Y~C~~~n~   76 (175)
T 1fnl_A           39 STQWFHNESLISS----QASSYFIDAATVNDSGEYRCQTNLS   76 (175)
T ss_dssp             CCEEEETTEEEES----SCSEEEESSCCGGGCEEEEEECSSS
T ss_pred             ceEEEECCEEccC----CceEEEEeCCCcccCEEEEEEeeCC
Confidence            478999554 542    4679999999999999999999764

>1xt5_A Variable region-containing chitin-binding protein 3; innate immunity, VCBP, primordial antigen receptor, florida lancelet, amphioxus; 1.15A {Branchiostoma floridae}

Probab=93.80  E-value=0.049  Score=48.53  Aligned_cols=25  Identities=32%  Similarity=0.629  Sum_probs=22.4

Q ss_pred             CeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228          21 NVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus        21 ~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ..|+|.+|+.+|+|.|.|.+.+...
T Consensus        92 ~sL~I~~v~~~D~G~Y~C~v~~~~~  116 (135)
T 1xt5_A           92 PTLRLTHVHPQDGGRYWCQVAQWSI  116 (135)
T ss_dssp             CCEEECSCCGGGCEEEEEEEECSSC
T ss_pred             CeEEECCCChhhCcEEEEEEEcCCc
Confidence            6899999999999999999987643

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=93.79  E-value=0.033  Score=56.83  Aligned_cols=44  Identities=16%  Similarity=0.345  Sum_probs=34.5

Q ss_pred             CcEEEEecCC-CCCcccc------CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA------EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~------~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.+. |+...+.      .+..|+|.+|+.+|+|.|.|.+.+..+
T Consensus        35 ~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g   85 (284)
T 2rik_A           35 IKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAG   85 (284)
T ss_dssp             CEEEEEETTEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CEEEEEECCEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEEEECCc
Confidence            4799999666 6654322      246899999999999999999987654

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=93.74  E-value=0.073  Score=51.55  Aligned_cols=44  Identities=25%  Similarity=0.459  Sum_probs=33.2

Q ss_pred             CcEEEEecCC-CCC-cccc-----CC--CeEEEcccCC-CCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPL-QRYA-----EG--NVLRITNARL-QDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~-~~~~-----~~--~~l~~~~~~~-~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.+. |+. ..+.     .+  ..|+|.+++. +|+|.|.|.+.+..+
T Consensus        36 ~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~~~n~~g   89 (212)
T 2yd1_A           36 PSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVG   89 (212)
T ss_dssp             CEEEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEEEECSSS
T ss_pred             CeEEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEEEEEeCCC
Confidence            4799999665 752 2111     23  4899999999 999999999987665

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=93.71  E-value=0.047  Score=57.69  Aligned_cols=44  Identities=23%  Similarity=0.419  Sum_probs=33.6

Q ss_pred             CcEEEEecCC-CCC---------cccc--CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPL---------QRYA--EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~---------~~~~--~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .+|+|.|.+. ++.         ..+.  .++.|.|.+|+.+|+|.|.|.+.+..+
T Consensus        48 ~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~  103 (349)
T 4dep_C           48 LTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGNYTCMLRNTTY  103 (349)
T ss_dssp             CEEEEEEEESSCCCEEECCCCCGGGCEEEETTEEEESSCCGGGCEEEEEEEECSSC
T ss_pred             ceEEEEECCCCCcccccccccccCceEeecCCEEEEccCChhhCEEEEEEEecCCc
Confidence            6899999774 321         1111  478999999999999999999987654

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=93.71  E-value=0.033  Score=53.62  Aligned_cols=43  Identities=14%  Similarity=0.322  Sum_probs=32.0

Q ss_pred             CcEEEEecCC-CC--------------CccccCCCeEEEcccCCCCCeeEEEEEcCCC
Q psy9228           2 AYIKWSRADG-LP--------------LQRYAEGNVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus         2 ~~~~w~~~~~-~~--------------~~~~~~~~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      ..|.|.|.+. ++              ......+..|+|.+++.+|+|.|.|.+.+..
T Consensus        34 ~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~   91 (209)
T 1nbq_A           34 PRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEG   91 (209)
T ss_dssp             EEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEEEEEEETT
T ss_pred             cEEEEEEcCCceeEEEEecCccCccccCceEeeccEEEEeeCCHHHCcEEEEEEecCC
Confidence            4789998665 31              1112245899999999999999999997654

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=93.70  E-value=0.042  Score=56.30  Aligned_cols=39  Identities=15%  Similarity=0.273  Sum_probs=31.7

Q ss_pred             cEEEEecCC-CCCccccCCCeEEEcccCCCCCeeEEEEEcC
Q psy9228           3 YIKWSRADG-LPLQRYAEGNVLRITNARLQDSGKYKCEIQG   42 (834)
Q Consensus         3 ~~~w~~~~~-~~~~~~~~~~~l~~~~~~~~d~g~y~c~~~~   42 (834)
                      +|+|.|.+. + ......+..|+|.+++.+|+|.|.|.+.+
T Consensus        39 ~i~W~~~~~~~-~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n   78 (290)
T 2o26_X           39 FVRWTFKTYFN-EMVENKKNEWIQEKAEATRTGTYTCSNSN   78 (290)
T ss_dssp             EEEEEEECSSS-CEEEECSSEEEETTCCGGGCEEEEEEESS
T ss_pred             cEEEecCCcce-eeecCCCceEEEeccCHHhCeEEEEEeeC
Confidence            689999776 6 22222468999999999999999999977

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=93.69  E-value=0.047  Score=58.93  Aligned_cols=44  Identities=34%  Similarity=0.560  Sum_probs=35.9

Q ss_pred             CcEEEEecCC-CCCcccc---CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA---EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~---~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.+. ++.....   .++.|.|.+++.+|+|.|.|.+.|..+
T Consensus       252 ~~v~W~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g  299 (404)
T 3p3y_A          252 PDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMG  299 (404)
T ss_dssp             CEEEEEETTBCCCTTTEEEEGGGTEEEESSCCGGGCEEEEEEEECSSC
T ss_pred             CcEEEEECCEECCCCcccccccCceEEEccCCHhHCEEEEEEEEeCCC
Confidence            4799999776 7654433   467999999999999999999987765

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A

Probab=93.69  E-value=0.041  Score=49.43  Aligned_cols=25  Identities=40%  Similarity=0.727  Sum_probs=21.8

Q ss_pred             CeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228          21 NVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus        21 ~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ..|+|.+|+.+|+|.|.|.+.+..+
T Consensus        85 ~sL~I~~v~~~D~G~Y~C~v~~~~~  109 (139)
T 1pko_A           85 VALRIQNVRFSDEGGYTCFFRDHSY  109 (139)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             EEEEEccCCHHHCEEEEEEEEcCCC
Confidence            4799999999999999999976543

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=93.63  E-value=0.049  Score=58.58  Aligned_cols=44  Identities=16%  Similarity=0.337  Sum_probs=35.4

Q ss_pred             CcEEEEecCC-CCCcc-----ccCCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQR-----YAEGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~-----~~~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .+|+|.|.+. |....     ...++.|.|.+++.+|+|.|.|.+.+..+
T Consensus        37 ~~v~W~k~g~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g   86 (395)
T 1bih_A           37 VKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPAG   86 (395)
T ss_dssp             CEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEEETTE
T ss_pred             ceEEEEECCcCcccccceEEEecCCceEEEecCCCCCCcEEEEEEEeCCC
Confidence            4899999666 76543     12578999999999999999999987654

>3v0a_B NTNH; botulinum neurotoxin, toxin, neurotoxin associated protein, progenitor toxin complex, VHH bound interlocked complex; HET: MES; 2.70A {Clostridium botulinum} PDB: 3v0b_B

Probab=93.59  E-value=2.4  Score=48.14  Aligned_cols=106  Identities=13%  Similarity=0.098  Sum_probs=68.8

Q ss_pred             eeeEEcC-Cceeeechhhhhh-ccCcceEEEEEEeCCCC---eeEEecCCCCCCCCCCcceEEEEEECCEEEEEEEc-CC
Q psy9228         652 SEVHFLG-EGYVELKKELIEE-RRNEETIAFDFVTDDKN---ALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDL-GD  725 (834)
Q Consensus       652 ~~~~F~g-~s~~~~~~~~~~~-~~~~~~i~~~frT~~~~---GlLl~~~~~~~~~~~~~~~~~l~l~~G~l~~~~~~-g~  725 (834)
                      .++.|.| ++.+.++...+.. ....++|+||+|...-+   -.|+-.-..       ..=-.|++.++.|...+.. .+
T Consensus       878 nAf~L~gSk~~I~l~NDii~N~ltnnFSISFWVRipk~~~~eyTIIg~~~n-------NsGW~ISf~~n~LIWtl~DsnG  950 (1196)
T 3v0a_B          878 DALYLNGSNQSISFSNDFFENGLTNSFSIYFWLRNLGKDTIKSKLIGSKED-------NCGWEIYFQDTGLVFNMIDSNG  950 (1196)
T ss_dssp             EEEEECSSSCCEEEECGGGGCCSSCCEEEEEEEEECCCCCSCEEEEEEEET-------TEEEEEEEETTEEEEEEECTTC
T ss_pred             ceEEecCCceeEEcccchhhcccccceEEEEEEEcCCcCCccceEEEeecC-------CCCcEEEECCCeEEEEEEcCCC
Confidence            3556666 4556665443321 23689999999985533   334422211       1124577799999988764 33


Q ss_pred             cEEEEEeCCceecCCCcEEEEEEEE--CCEEEEEEcCeeeecc
Q psy9228         726 GVVTIKFSKKPVNDGIKHSVNVTRI--NKFGSLEVDSVIVGKG  766 (834)
Q Consensus       726 ~~~~l~~s~~~~nDg~wH~V~i~r~--~~~~~l~VD~~~~~~~  766 (834)
                      ....+..+  .+.+|+||+|+|+..  +..+.++|||..+...
T Consensus       951 n~knI~f~--dy~~NkWyfITISvDRLGnalkIYINGkLv~~~  991 (1196)
T 3v0a_B          951 NEKNIYLS--DVSNNSWHYITISVDRLKEQLLIFIDDNLVANE  991 (1196)
T ss_dssp             CEEEEEEC--SCCSSSCEEEEEEEETTTTEEEEEETTEEEEEE
T ss_pred             cccceEec--cccCCcEEEEEEEEcCCCceeEEEECCEEeech
Confidence            44555544  788999999999988  4556999999887665

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=93.56  E-value=0.017  Score=56.11  Aligned_cols=44  Identities=14%  Similarity=0.218  Sum_probs=33.3

Q ss_pred             CcEEEEecCC-CCCccc-----cC------CCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRY-----AE------GNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~-----~~------~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .+|+|.|.++ ++....     ..      ...|+|.+++.+|+|.|.|.+.+..+
T Consensus        37 ~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~   92 (207)
T 2vol_A           37 VQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAF   92 (207)
T ss_dssp             CEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEEEEEECTTC
T ss_pred             eEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEEEEEEccCC
Confidence            3899999777 654211     11      24799999999999999999987654

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=93.54  E-value=0.04  Score=56.35  Aligned_cols=44  Identities=25%  Similarity=0.533  Sum_probs=34.1

Q ss_pred             CcEEEEecCC--CCCcccc---C---CCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG--LPLQRYA---E---GNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~--~~~~~~~---~---~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .+|.|.|.+|  ++...+.   .   ...|.|.+++.+|+|.|.|.+.+..+
T Consensus        33 ~~v~W~~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g   84 (291)
T 2wim_A           33 ESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKG   84 (291)
T ss_dssp             SEEECBCTTCCBCCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSS
T ss_pred             CceEEECCCCcCccCCCcEEEecCCCEEEEEEccCCcccCEEEEEEEecccC
Confidence            4799999666  6554433   1   24899999999999999999987655

>2yz1_A Tyrosine-protein phosphatase non-receptor type substrate 1; beta-sandwich, structural genomics, NPPSFA; 1.40A {Mus musculus}

Probab=93.52  E-value=0.069  Score=46.51  Aligned_cols=23  Identities=30%  Similarity=0.504  Sum_probs=20.8

Q ss_pred             CeEEEcccCCCCCeeEEEEEcCC
Q psy9228          21 NVLRITNARLQDSGKYKCEIQGH   43 (834)
Q Consensus        21 ~~l~~~~~~~~d~g~y~c~~~~~   43 (834)
                      ..|+|.+|+.+|+|+|.|.+.+.
T Consensus        78 ~~L~I~~v~~~DsG~Y~C~~~~~  100 (120)
T 2yz1_A           78 FSIRISNVTPEDAGTYYCVKFQK  100 (120)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEEC
T ss_pred             EEEEECCCCHHHCEEEEEEEEcC
Confidence            47999999999999999999754

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=93.51  E-value=0.041  Score=57.15  Aligned_cols=44  Identities=18%  Similarity=0.293  Sum_probs=34.3

Q ss_pred             CcEEEEecCC-CCCcc-cc--CCCeEEEcccCCCCCeeEEEEEc-CCCC
Q psy9228           2 AYIKWSRADG-LPLQR-YA--EGNVLRITNARLQDSGKYKCEIQ-GHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~-~~--~~~~l~~~~~~~~d~g~y~c~~~-~~~~   45 (834)
                      ++|+|.|.+. |+... +.  .++.|.|.+|+.+|+|.|.|.+. +..+
T Consensus       139 ~~i~W~k~~~~l~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~n~~g  187 (315)
T 1itb_B          139 PKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLG  187 (315)
T ss_dssp             CCCEEEETTEECCCCSSSEEEETTEEEESSCCGGGCEEEEEEEEEEETT
T ss_pred             CEEEEEECCEECCCccceEeecCceEEEEeceehhCcEEEEEEEcCCCC
Confidence            4799999666 75432 22  57899999999999999999997 4444

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=93.51  E-value=0.054  Score=50.28  Aligned_cols=38  Identities=24%  Similarity=0.433  Sum_probs=30.7

Q ss_pred             CcEEEEecCC-CCCccccCCCeEEEcccCCCCCeeEEEEEcCC
Q psy9228           2 AYIKWSRADG-LPLQRYAEGNVLRITNARLQDSGKYKCEIQGH   43 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~~~~~l~~~~~~~~d~g~y~c~~~~~   43 (834)
                      .++.|.|.+. |+..    ...|.|.+++.+|+|.|.|.+.+.
T Consensus        35 ~~~~W~~~g~~~~~~----~~~~~~~~~~~~d~G~Y~C~~~~~   73 (170)
T 3ry4_A           35 DSIQWFHNGNLIPTH----TQPSYRFKANNNDSGEYTCQTGQT   73 (170)
T ss_dssp             SCEEEEETTEECTTC----CSSEEEEECCGGGCEEEEEEETTS
T ss_pred             ceEEEEECCeEcccC----ccceEEEecccccCeEEEEEEeCC
Confidence            4799999555 6543    457889999999999999999754

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=93.51  E-value=0.041  Score=56.33  Aligned_cols=43  Identities=21%  Similarity=0.223  Sum_probs=33.9

Q ss_pred             CcEEEEecCC--CCCcccc---CCCeEEEcccCCCCCeeEEEEEcCCC
Q psy9228           2 AYIKWSRADG--LPLQRYA---EGNVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus         2 ~~~~w~~~~~--~~~~~~~---~~~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      ++|+|.|.++  ++...+.   .++.|+|.+++.+|+|.|.|.+.+..
T Consensus       120 ~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~  167 (292)
T 4dkd_C          120 AGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGG  167 (292)
T ss_dssp             SSEEEEEGGGCCCCSSCCEECCSSSCCEETTCCGGGCSEEEEEECSTT
T ss_pred             eeEEEEecCCCccccCCcccccCCceEEECCCCHHHCeEEEEEEEeCC
Confidence            5799999766  6554433   35669999999999999999997654

>2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain amyloidosis, amyloid, immunoglobulin, protein fibril; 1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A 3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A 3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A ...

Probab=93.44  E-value=0.038  Score=47.29  Aligned_cols=24  Identities=17%  Similarity=0.292  Sum_probs=21.4

Q ss_pred             CeEEEcccCCCCCeeEEEEEcCCC
Q psy9228          21 NVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus        21 ~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      ..|+|.+|+.+|+|+|.|.+.+..
T Consensus        73 ~~L~I~~v~~~DsG~Y~C~~~~~~   96 (109)
T 2q20_A           73 FTFTISSLQPEDIATYYCQQYDNL   96 (109)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSSS
T ss_pred             EEEEECCCChhhCEEEEEEEeeCC
Confidence            479999999999999999998653

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=93.44  E-value=0.046  Score=55.24  Aligned_cols=42  Identities=12%  Similarity=0.025  Sum_probs=31.9

Q ss_pred             CcEEEEecCC-CCCcc-------ccCCCeEEEcccCCCCCeeEEEEEcCC
Q psy9228           2 AYIKWSRADG-LPLQR-------YAEGNVLRITNARLQDSGKYKCEIQGH   43 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~-------~~~~~~l~~~~~~~~d~g~y~c~~~~~   43 (834)
                      ..|.|.|++. +....       ...+..|.|.+|+.+|+|.|.|.+.+.
T Consensus        35 ~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~   84 (257)
T 1b6u_A           35 QHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSVT   84 (257)
T ss_dssp             SEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEEECS
T ss_pred             cEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeEecc
Confidence            4789999776 53211       124578999999999999999999653

>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens}

Probab=93.44  E-value=0.062  Score=47.08  Aligned_cols=26  Identities=15%  Similarity=0.317  Sum_probs=22.5

Q ss_pred             CCCeEEEcccCCCCCeeEEEEEcCCC
Q psy9228          19 EGNVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus        19 ~~~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      .++.|+|.||+.+|+|.|.|...+..
T Consensus        71 ~~~sL~I~nv~~~DsG~Y~c~v~~~~   96 (121)
T 2edo_A           71 QSGALYISKVQKEDNSTYIMRVLKKT   96 (121)
T ss_dssp             TTCCEEESSCCGGGCSEEEEEEEETT
T ss_pred             CCceEEEeCCCHHHCeEEEEEEEcCC
Confidence            35799999999999999999996443

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=93.43  E-value=0.058  Score=55.12  Aligned_cols=43  Identities=26%  Similarity=0.448  Sum_probs=33.6

Q ss_pred             CcEEEEecCC-CCCccc-----cCCCeEEEcccCCCCCeeEEEEEcCCC
Q psy9228           2 AYIKWSRADG-LPLQRY-----AEGNVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~-----~~~~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      ++|.|.|.+. ++....     ..++.|.|.+++.+|+|.|.|.+.+..
T Consensus       130 ~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~  178 (291)
T 1qz1_A          130 PTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILA  178 (291)
T ss_dssp             CEEEEEETTSCSSTTCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGG
T ss_pred             CEEEEEECCEEcccCCCceEEEccCCcEEEccCccccCeEEEEEEEecC
Confidence            4799999776 543221     257899999999999999999997543

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=93.42  E-value=0.034  Score=53.92  Aligned_cols=26  Identities=23%  Similarity=0.359  Sum_probs=22.4

Q ss_pred             CCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228          20 GNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus        20 ~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      +..|+|.+|+.+|+|.|.|.+.+..+
T Consensus        69 ~~~L~I~~v~~~D~G~Y~C~~~~~~~   94 (213)
T 3mj8_L           69 MATLTISKAQAGDEADYYCQSWDGTN   94 (213)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEETTT
T ss_pred             EEEEEECCCChhhCEEEEEEeccCCc
Confidence            45799999999999999999976543

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=93.35  E-value=0.063  Score=55.45  Aligned_cols=42  Identities=24%  Similarity=0.449  Sum_probs=31.8

Q ss_pred             CcEEEEecCC-CCCccccCCCe--EEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYAEGNV--LRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~~~~~--l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.+. |+.......+.  |.|.++  +|+|.|.|.+.|..+
T Consensus       235 p~v~W~~~~~~l~~~~~~~~~~~~L~i~~~--~d~G~Y~C~a~N~~G  279 (304)
T 2yd9_A          235 PYVKWMQGAEDLTPEDDMPVGRNVLELTDV--KDSANYTCVAMSSLG  279 (304)
T ss_dssp             CEEEEEETTEECSCSSSCCBSEEEEEECSC--CSCEEEEEEEEETTE
T ss_pred             CEEEEEECCEECCCcccccCCcEEEEEccc--ccCEEEEEEEEeCCC
Confidence            4799999666 87766555455  555655  699999999998776

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=93.34  E-value=0.055  Score=55.77  Aligned_cols=44  Identities=18%  Similarity=0.327  Sum_probs=33.5

Q ss_pred             CcEEEEecCC-CCCccc-c-----CCC--eEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRY-A-----EGN--VLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~-~-----~~~--~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .+|+|.|.+. |..... .     .++  .|+|.+|+.+|+|.|.|.+.+..+
T Consensus        34 ~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g   86 (305)
T 2nzi_A           34 PIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGG   86 (305)
T ss_dssp             CEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEEEEETTE
T ss_pred             CeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEEEEcCCC
Confidence            4799999666 654321 1     233  899999999999999999987654

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=93.32  E-value=0.052  Score=56.08  Aligned_cols=44  Identities=20%  Similarity=0.344  Sum_probs=34.9

Q ss_pred             CcEEEEecCC-CCCcc------ccCCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQR------YAEGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~------~~~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.+. +....      ...++.|.|.+++.+|+|.|.|.+.+..+
T Consensus       138 ~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g  188 (304)
T 2yd9_A          138 PEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAG  188 (304)
T ss_dssp             CEEEEEETTEECCGGGGTTSEEECTTSCEEECSCCGGGCEEEEEEEEETTE
T ss_pred             CeEEEEECCEECcCCCCcceEEeCCCeEEEEccCCcccCEEEEEEEEeCCC
Confidence            4799999666 66532      12467999999999999999999987654

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=93.25  E-value=0.065  Score=53.68  Aligned_cols=38  Identities=26%  Similarity=0.427  Sum_probs=31.8

Q ss_pred             cEEEEecCC-CCCccccCCCeEEEcccCCCCCeeEEEEEcCCC
Q psy9228           3 YIKWSRADG-LPLQRYAEGNVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus         3 ~~~w~~~~~-~~~~~~~~~~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      +|+|.|.+. |+.    .+..|+|.+++.+|+|.|.|.+.+..
T Consensus        33 ~~~W~~~g~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~   71 (262)
T 3rjd_A           33 STQWFLNGTATQT----STPSYRITSASVNDSGEYRCQRGLSG   71 (262)
T ss_dssp             CEEEEETTEECSC----CSSEEEESSCCGGGCEEEEEEESSSC
T ss_pred             eEEEEECCEEeec----cCCeEEEecCCcccCeEEEEEEecCC
Confidence            799999554 654    36789999999999999999997654

>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen, glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A {Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4

Probab=93.23  E-value=0.13  Score=42.48  Aligned_cols=71  Identities=23%  Similarity=0.506  Sum_probs=53.6

Q ss_pred             CccCCCCCCCCCCCCEecc-CCCCCceEeeCCCCCCC--CCCCCCCCC-ccCC--CCC-CCeeecCC-CCeEEeCCCCc-
Q psy9228         136 NTCKSSKHNNCINNGLCQD-AATRIGYTCICPPGFSG--DRCSVLGEP-CYPG--ACG-DGSCQDVD-GAMKCLCPIGT-  206 (834)
Q Consensus       136 ~~C~~~~~~pC~n~g~C~~-~~~~~~~~C~C~~g~~G--~~Ce~~~~~-C~~~--~C~-~g~C~~~~-~~~~C~C~~g~-  206 (834)
                      ..|.   ..-|.-++.|.. .+  +.-.|+|..||.|  ..|-.. ++ |..+  -|. ++.|.... .-..|.|..+| 
T Consensus        11 h~C~---~t~Cp~NA~C~r~~~--G~e~CrCl~gY~~dg~~Cv~~-Np~C~~nNGGCd~nAeC~~~~~~ki~C~C~~~~~   84 (105)
T 1n1i_A           11 HKCI---DTNVPENAACYRYLD--GTEEWRCLLGFKEVGGKCVPA-SITCEENNGGCAPEAECTMDDKKEVECKCTKEGS   84 (105)
T ss_dssp             TSCC---SSCCCTTEEEEECTT--SCEEEEECTTEEECSSSEEEC-CCCTTSGGGGSCTTSEEEECTTSCEEEECCSTTC
T ss_pred             cEec---CCCCCCCCCeEECCC--CCEeEEEECCeeccCCEEEEC-CcchhhcCCCcCCCcEeEECCCCEEEeECCCCCC
Confidence            4566   667888999986 44  6789999999974  578655 77 7653  376 68999886 78999998884 


Q ss_pred             ----ccCccc
Q psy9228         207 ----AGKRCE  212 (834)
Q Consensus       207 ----~G~~Ce  212 (834)
                          .|..|.
T Consensus        85 ~~~~~GvfC~   94 (105)
T 1n1i_A           85 EPLFEGVFCS   94 (105)
T ss_dssp             CEEGGGTEEC
T ss_pred             ccccceEEEC
Confidence                466664

>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L*

Probab=93.23  E-value=0.048  Score=42.18  Aligned_cols=37  Identities=27%  Similarity=0.571  Sum_probs=28.7

Q ss_pred             CCCCCccCC--CCCCCeeecCCC-CeEEeCCCCcc----cCcccc
Q psy9228         176 VLGEPCYPG--ACGDGSCQDVDG-AMKCLCPIGTA----GKRCEQ  213 (834)
Q Consensus       176 ~~~~~C~~~--~C~~g~C~~~~~-~~~C~C~~g~~----G~~Ce~  213 (834)
                      .++|+|..+  .|.+ .|++..+ +|.|.|+.||.    |+.|+.
T Consensus         3 ~d~~eC~~~nggC~h-~C~n~~g~s~~C~C~~Gy~L~~D~~tC~d   46 (69)
T 1kli_L            3 DDQLICVNENGGCEQ-YCSDHTGTKRSCRCHEGYSLLADGVSCTP   46 (69)
T ss_dssp             SCCCCTTSGGGGCSS-EEEEETTTEEEEECCTTEEECTTSSCEEE
T ss_pred             cccccccCCCCCcCC-EeEcCCCCCEEEeCCCCCeECCCCCcccC
Confidence            577888753  3543 7999988 79999999995    778864

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=93.23  E-value=0.076  Score=54.97  Aligned_cols=44  Identities=23%  Similarity=0.400  Sum_probs=34.2

Q ss_pred             CcEEEEecCC-CCCcccc----CC--CeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA----EG--NVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~----~~--~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.+. |....+.    .+  ..|.|.+++.+|+|.|.|.+.+..+
T Consensus       138 ~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g  188 (317)
T 2y25_A          138 LKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKT  188 (317)
T ss_dssp             CEEEEEESSSBCCCCSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSC
T ss_pred             cEEEEEECCEECCCCCCeEEeccCCEEEEEECcCCcccCeeEEEEEEeCCc
Confidence            4799999777 7654433    22  2499999999999999999987665

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=93.22  E-value=0.072  Score=52.65  Aligned_cols=44  Identities=20%  Similarity=0.394  Sum_probs=33.3

Q ss_pred             CcEEEEe----cCC-CCCcccc--------------CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSR----ADG-LPLQRYA--------------EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~----~~~-~~~~~~~--------------~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|.|.|    .+. |......              .+..|.|.+++.+|+|.|.|.+.|..+
T Consensus       144 p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g  206 (241)
T 3grw_A          144 PHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIG  206 (241)
T ss_dssp             CEEEEEEECCSSSCSSCTTTCCCEEEEEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSSC
T ss_pred             CEEEEEEcccCCCcccCCCCceeeeeeeEeeeeecCCceEEEECcCCcccCcEEEEEEecCcc
Confidence            4799999    444 5443221              245799999999999999999998765

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=93.20  E-value=0.016  Score=60.95  Aligned_cols=42  Identities=24%  Similarity=0.364  Sum_probs=0.0

Q ss_pred             CcEEEEecCC-CCCcccc--CCCeEEEcccCCCCCeeEEEEEcCC
Q psy9228           2 AYIKWSRADG-LPLQRYA--EGNVLRITNARLQDSGKYKCEIQGH   43 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~--~~~~l~~~~~~~~d~g~y~c~~~~~   43 (834)
                      ++|+|.|.+. |+...+.  .++.|+|.+|+.+|+|.|.|.+.+.
T Consensus        39 ~~v~W~k~g~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~   83 (334)
T 1ry7_B           39 GPTVWVKDGTGLVPSERVLVGPQRLQVLNASHEDSGAYSCRQRLT   83 (334)
T ss_dssp             ---------------------------------------------
T ss_pred             cceEEEECCeeCCCcccEEeccceEEEeecccccCEEEEEEEEeC
Confidence            4799999666 7654443  5789999999999999999999776

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=93.19  E-value=0.03  Score=58.19  Aligned_cols=44  Identities=25%  Similarity=0.534  Sum_probs=33.9

Q ss_pred             CcEEEEecCC-CCCc----ccc--CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQ----RYA--EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~----~~~--~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.+. ++..    .+.  .++.|+|.+|+.+|+|.|.|.+.+..+
T Consensus        36 ~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g   86 (315)
T 1itb_B           36 GTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSY   86 (315)
T ss_dssp             SCCCEECTTSCSCSCCCTTSSSEECSSBEECTTCCGGGCSCCEECCCSSSC
T ss_pred             ceEEEEeCCCcCccccccCCcEeccCCeEEECCCChhhCEEEEEEEeCCce
Confidence            4799999776 5432    222  567999999999999999999976643

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=93.18  E-value=0.058  Score=54.91  Aligned_cols=44  Identities=23%  Similarity=0.439  Sum_probs=34.7

Q ss_pred             CcEEEEecCC-CCCcccc------CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA------EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~------~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|.|.|.+. +......      ....|.|.+++.+|+|.|.|.+.+..+
T Consensus       129 ~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g  179 (284)
T 2rik_A          129 IKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAG  179 (284)
T ss_dssp             CEEEEEETTEECCCSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSC
T ss_pred             CEEEEEECCEECcCCCcEEEEEcCCEEEEEECCCCcccCEEEEEEEEcCCC
Confidence            4799999666 6654332      346899999999999999999987654

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=93.02  E-value=0.018  Score=56.57  Aligned_cols=43  Identities=16%  Similarity=0.329  Sum_probs=32.6

Q ss_pred             CcEEEEecCC-CCCccc-----c------CCCeEEEcccCCCCCeeEEEEEcCCC
Q psy9228           2 AYIKWSRADG-LPLQRY-----A------EGNVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~-----~------~~~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      .+|+|.|.++ ++....     .      ....|+|.+++.+|+|.|.|.+.+..
T Consensus        45 ~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~g~Y~C~~~~~~   99 (218)
T 2rgs_A           45 VQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMSGKEFKCKVNNKD   99 (218)
T ss_dssp             EEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHHTTCCEEEEEEETT
T ss_pred             eEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcCCCCeEEEEEECCc
Confidence            4799999777 664321     1      12469999999999999999997654

>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A {Orectolobus maculatus} PDB: 2ywy_A

Probab=93.01  E-value=0.058  Score=46.33  Aligned_cols=22  Identities=45%  Similarity=0.806  Sum_probs=20.5

Q ss_pred             CeEEEcccCCCCCeeEEEEEcC
Q psy9228          21 NVLRITNARLQDSGKYKCEIQG   42 (834)
Q Consensus        21 ~~l~~~~~~~~d~g~y~c~~~~   42 (834)
                      ..|+|.+|+.+|+|.|.|.+.+
T Consensus        66 ~~L~I~~v~~~DsG~Y~C~~~~   87 (111)
T 2ywz_A           66 FSLRISDLRVEDSGTYKCQADY   87 (111)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEE
T ss_pred             EEEEECCCChhcCEEEEEEEEc
Confidence            4799999999999999999976

>2jju_A Signal regulatory protein beta-1; immunoglobulin domain, immunoglobulin superfamily, immune system, transmembrane, paired receptor; 1.19A {Homo sapiens} PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A

Probab=93.00  E-value=0.066  Score=47.29  Aligned_cols=24  Identities=25%  Similarity=0.378  Sum_probs=21.2

Q ss_pred             CCeEEEcccCCCCCeeEEEEEcCC
Q psy9228          20 GNVLRITNARLQDSGKYKCEIQGH   43 (834)
Q Consensus        20 ~~~l~~~~~~~~d~g~y~c~~~~~   43 (834)
                      ...|+|.+|+.+|+|+|.|.+.+.
T Consensus        73 ~~~L~I~~v~~~DsG~Y~C~~~~~   96 (127)
T 2jju_A           73 DFSISISNITPADAGTYYCVKFRK   96 (127)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEEC
T ss_pred             EEEEEECCCCHHHCEEEEEEEEcC
Confidence            457999999999999999999654

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=93.00  E-value=0.08  Score=50.06  Aligned_cols=25  Identities=28%  Similarity=0.422  Sum_probs=22.0

Q ss_pred             CCCeEEEcccCCCCCeeEEEEEcCC
Q psy9228          19 EGNVLRITNARLQDSGKYKCEIQGH   43 (834)
Q Consensus        19 ~~~~l~~~~~~~~d~g~y~c~~~~~   43 (834)
                      .++.|+|.+|+.+|+|.|.|.+.+.
T Consensus        67 ~~~sL~I~~v~~~D~G~Y~C~v~~~   91 (180)
T 2dru_A           67 TNGALRIYNVSKEDRGDYYMRMLHE   91 (180)
T ss_dssp             TTCCEEECSCCGGGCEEEEEEEESS
T ss_pred             CCccEEEcCCCHHHCeEEEEEEEcC
Confidence            4678999999999999999998544

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=93.00  E-value=0.068  Score=52.11  Aligned_cols=44  Identities=23%  Similarity=0.372  Sum_probs=33.2

Q ss_pred             CcEEEEecCC--CCCcccc-----CCC---eEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG--LPLQRYA-----EGN---VLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~--~~~~~~~-----~~~---~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|.|.|.++  ++.....     .++   +|.|.+|+.+|+|.|.|.+.|..+
T Consensus       141 ~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g  194 (222)
T 4i0k_A          141 AEVFWKDGQGVPLTGNVTTSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVL  194 (222)
T ss_dssp             CEEEEECTTSCBCCSEEEEEEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTT
T ss_pred             CeEEEEcCCCccCCCCcceeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCC
Confidence            4799999666  5543322     233   389999999999999999987765

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=92.99  E-value=0.073  Score=50.21  Aligned_cols=24  Identities=33%  Similarity=0.625  Sum_probs=20.7

Q ss_pred             CCeEEEcccCCCCCeeEEEEEcCC
Q psy9228          20 GNVLRITNARLQDSGKYKCEIQGH   43 (834)
Q Consensus        20 ~~~l~~~~~~~~d~g~y~c~~~~~   43 (834)
                      ...|+|.+|+.+|+|.|.|.+.+.
T Consensus        67 ~~~L~i~~v~~~D~G~Y~C~~~~~   90 (184)
T 2ny1_B           67 NFPLIIKNLKIEDSDTYICEVEDQ   90 (184)
T ss_dssp             BCCEEECSCCGGGCEEEEEEETTE
T ss_pred             eEEEEEecCCHHHCEEEEEEEEcC
Confidence            345999999999999999999644

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=92.97  E-value=0.057  Score=55.21  Aligned_cols=43  Identities=14%  Similarity=0.299  Sum_probs=33.2

Q ss_pred             cEEEEecCC-CCCcccc--------CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           3 YIKWSRADG-LPLQRYA--------EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         3 ~~~w~~~~~-~~~~~~~--------~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .+.|.|.+. |+.....        .+..|.|.+|+.+|+|.|.|.+.|..+
T Consensus       218 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g  269 (292)
T 4dkd_C          218 DVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQG  269 (292)
T ss_dssp             EEECCBSSCCCCCCBEEEEETTEEEEEEEEEESSCCTTSCEEEEEEEECSSC
T ss_pred             EEEEeCCCcccccCccceeccceeeeEEEEEECccChhcCeEEEEEEecCCC
Confidence            577888666 6543322        234899999999999999999998876

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=92.97  E-value=0.08  Score=56.32  Aligned_cols=26  Identities=15%  Similarity=0.010  Sum_probs=23.2

Q ss_pred             CCeEEEcccCCCCCeeEEEEEcCC--CC
Q psy9228          20 GNVLRITNARLQDSGKYKCEIQGH--DS   45 (834)
Q Consensus        20 ~~~l~~~~~~~~d~g~y~c~~~~~--~~   45 (834)
                      ...|+|.+|+.+|+|.|.|.+.|.  .+
T Consensus       254 ~~~L~i~~v~~~d~G~Y~C~a~n~~~~g  281 (363)
T 1wio_A          254 PLHLTLPQALPQYAGSGNLTLALEAKTG  281 (363)
T ss_dssp             SCEEEESSBCGGGCEEEEEEECBTTTTC
T ss_pred             ceEEEEccCCcCcCcEEEEEEEEhhhcC
Confidence            349999999999999999999887  54

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=92.94  E-value=0.064  Score=56.37  Aligned_cols=44  Identities=20%  Similarity=0.380  Sum_probs=34.3

Q ss_pred             CcEEEEecCC-CCCcccc-----CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA-----EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~-----~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|.|.|.+. |+.....     ..+.|.|.+|+.+|+|.|.|.+.+..+
T Consensus       155 ~~v~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g  204 (339)
T 3o4o_C          155 VKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHE  204 (339)
T ss_dssp             CCBCCEESSCBCCTTCSSEEECTTSSEEEESSCCGGGCEEEEEEEECCBT
T ss_pred             ceEEEecCCeeCCCCCceeEEcCCcceEEEcccCHhhCeEEEEEEEECCC
Confidence            4789999666 7654221     235899999999999999999987654

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=92.91  E-value=0.043  Score=53.17  Aligned_cols=26  Identities=15%  Similarity=0.222  Sum_probs=22.4

Q ss_pred             CCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228          20 GNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus        20 ~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      +..|+|.+|+.+|+|.|.|.+.+..+
T Consensus        67 ~~~L~I~~v~~~D~G~Y~C~~~~~~~   92 (211)
T 3tv3_L           67 TASLTVSGLQTDDEAVYYCGSLVGNW   92 (211)
T ss_dssp             EEEEEEESCCGGGCEEEEEEEEETTT
T ss_pred             EEEEEECCCChhHCEEEEEEEecCCC
Confidence            34799999999999999999976554

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=92.90  E-value=0.06  Score=51.51  Aligned_cols=27  Identities=26%  Similarity=0.628  Sum_probs=23.6

Q ss_pred             CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228          19 EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus        19 ~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .++.|+|.+|+.+|+|.|.|.+.+..+
T Consensus        68 ~~~sL~I~~v~~~D~G~Y~C~~~~~~~   94 (193)
T 2if7_A           68 QSYSLQLSNLKMEDTGSYRAQISTKTS   94 (193)
T ss_dssp             TTCCEEECSCCGGGCEEEEEEEECSSC
T ss_pred             CCeEEEECCCCcccCceEEEEEEecCC
Confidence            367899999999999999999976654

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=92.84  E-value=0.053  Score=61.90  Aligned_cols=44  Identities=20%  Similarity=0.331  Sum_probs=34.6

Q ss_pred             CcEEEEecCC-CCCcccc----C--CCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA----E--GNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~----~--~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.+. |....+.    .  ...|.|.+|+.+|+|.|.|.+.|..+
T Consensus        35 ~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g   85 (570)
T 3b43_A           35 IRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAENSVG   85 (570)
T ss_dssp             CEEEEECSSSBCCCCSSEEEECCTTEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CEEEEEECCEEccCCCCEEEEEECCEEEEEEccCChhhCEEEEEEEEeCCc
Confidence            4799999777 7653321    2  35899999999999999999987654

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=92.84  E-value=0.064  Score=53.07  Aligned_cols=25  Identities=16%  Similarity=0.139  Sum_probs=21.0

Q ss_pred             CCeEEEcccCCCCCeeEEEEEcCCC
Q psy9228          20 GNVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus        20 ~~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      ...|+|.+|+.+|+|.|.|.+.+..
T Consensus        72 ~~~L~I~~v~~~DsG~Y~C~~~~~~   96 (238)
T 2p1y_A           72 NFSLILELATPSQTSVYFCASGDLG   96 (238)
T ss_dssp             BCEEEESSCCGGGCEEEEEEEEC--
T ss_pred             eEEEEEecCCcccCeeEEEEEEeCC
Confidence            3479999999999999999997654

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=92.80  E-value=0.065  Score=56.02  Aligned_cols=25  Identities=24%  Similarity=0.364  Sum_probs=22.2

Q ss_pred             CCeEEEcccCCCCCeeEEEEEcCCC
Q psy9228          20 GNVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus        20 ~~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      +..|+|.+|+.+|+|.|.|.+.+..
T Consensus        73 ~~~L~I~~v~~~D~G~Y~C~a~n~~   97 (327)
T 2wng_A           73 DFSISISNITPADAGTYYCVKFRKG   97 (327)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEESS
T ss_pred             eeEEEEccCccccCeEEEEEeecCC
Confidence            4579999999999999999997754

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=92.80  E-value=0.081  Score=51.17  Aligned_cols=24  Identities=25%  Similarity=0.398  Sum_probs=21.7

Q ss_pred             eEEEcccCCCCCeeEEEEEcCCCC
Q psy9228          22 VLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus        22 ~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .|+|.+|+.+|+|.|.|.+.+..+
T Consensus        72 ~L~I~~v~~~D~G~Y~C~~~~~~~   95 (213)
T 3d9a_L           72 TLSINSVETEDFGMYFCQQSNSWP   95 (213)
T ss_dssp             EEEESSCCGGGCEEEEEEECSSSS
T ss_pred             EEEECCCChhhCEEEEEeeecCCc
Confidence            899999999999999999976654

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=92.78  E-value=0.065  Score=55.78  Aligned_cols=44  Identities=14%  Similarity=0.091  Sum_probs=34.1

Q ss_pred             CcEEEEecCC-CCCcccc-------CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA-------EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~-------~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ..+.|.|.+. ++.....       .++.|.|.+|+.+|+|.|.|.+.|..+
T Consensus       147 ~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g  198 (316)
T 3vh8_G          147 EHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHT  198 (316)
T ss_dssp             SEEEEEETTCCSCCEEEECEEETTEEEEEEEECSCCGGGCEEEEEEEECTTC
T ss_pred             cEEEEEECCCccccceeeeeecCCCceEEEEECCCChhhCceEEEEEecCCC
Confidence            4789999776 6543211       356899999999999999999987654

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=92.76  E-value=0.061  Score=55.63  Aligned_cols=24  Identities=29%  Similarity=0.566  Sum_probs=21.4

Q ss_pred             CCeEEEcccCCCCCeeEEEEEcCC
Q psy9228          20 GNVLRITNARLQDSGKYKCEIQGH   43 (834)
Q Consensus        20 ~~~l~~~~~~~~d~g~y~c~~~~~   43 (834)
                      +..|+|.+|+.+|+|.|.|.+.+.
T Consensus        73 ~~sL~I~~v~~~D~G~Y~C~a~n~   96 (308)
T 4fom_A           73 DATITLHNIGFSDSGKYICKAVTF   96 (308)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEET
T ss_pred             ceEEEEccCCHHHCEEEEEEEeeC
Confidence            467999999999999999999754

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=92.75  E-value=0.085  Score=51.55  Aligned_cols=26  Identities=27%  Similarity=0.508  Sum_probs=23.5

Q ss_pred             CCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228          20 GNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus        20 ~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      +..|.|.+++.+|+|.|.|.+.|..+
T Consensus       184 ~~~L~i~~~~~~d~G~Y~C~a~n~~g  209 (231)
T 3ojm_B          184 AEVLALFNVTEADAGEYICKVSNYIG  209 (231)
T ss_dssp             TTEEEECSCCGGGCEEEEEEEEETTE
T ss_pred             ccEEEEecCCHHHCeEEEEEEEeccc
Confidence            46799999999999999999988765

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=92.75  E-value=0.06  Score=51.61  Aligned_cols=26  Identities=23%  Similarity=0.424  Sum_probs=23.0

Q ss_pred             CCCeEEEcccCCCCCeeEEEEEcCCC
Q psy9228          19 EGNVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus        19 ~~~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      .+..|+|.+|+.+|+|.|.|.+.+..
T Consensus        63 ~~~~L~I~~v~~~D~G~Y~C~~~~~~   88 (201)
T 1dr9_A           63 NNLSIVILALRPSDEGTYECVVLKYE   88 (201)
T ss_dssp             TTTEEEECSCCGGGCEEEEEEEEECC
T ss_pred             CCcEEEEecccchhCeEEEEEEEcCC
Confidence            35799999999999999999998754

>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L*

Probab=92.72  E-value=0.041  Score=40.05  Aligned_cols=32  Identities=28%  Similarity=0.644  Sum_probs=23.7

Q ss_pred             CCCCCCEeccCCCCC-ceEeeCCCCCC----CCCCCCCCCCc
Q psy9228         145 NCINNGLCQDAATRI-GYTCICPPGFS----GDRCSVLGEPC  181 (834)
Q Consensus       145 pC~n~g~C~~~~~~~-~~~C~C~~g~~----G~~Ce~~~~~C  181 (834)
                      .|.+  .|++.+  + +|+|.|++||.    |..| .++|+|
T Consensus         8 gC~~--~C~n~~--ggs~~C~C~~Gy~L~~Dg~tC-~d~dec   44 (53)
T 2bz6_L            8 GCEQ--YCSDHT--GTKRSCRCHEGYSLLADGVSC-TPTVEY   44 (53)
T ss_dssp             GCSS--EEEEET--TTEEEEECCTTEEECTTSSCE-EECSSS
T ss_pred             CcCC--EeEcCC--CCCEEeeCCCCCEECCCCCcc-cCCccc
Confidence            4655  588876  6 69999999996    7778 456666

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=92.72  E-value=0.044  Score=57.60  Aligned_cols=44  Identities=23%  Similarity=0.434  Sum_probs=33.7

Q ss_pred             CcEEEEecCC-CCCcc----c--cCCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQR----Y--AEGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~----~--~~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .+|+|.|.+. ++...    +  ..++.|.|.+|+.+|+|.|.|.+.+..+
T Consensus        55 ~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~g  105 (339)
T 3o4o_C           55 INLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASY  105 (339)
T ss_dssp             CBCCCEESSCCSCCSCCSSSCEEEETTEEEESSBCTTCCEEEECCEEETTE
T ss_pred             ceEEEEECCCCcccCccccccEEeeCCeEEECCCCcccCEEEEEEEECCcc
Confidence            4789999666 33221    1  2578999999999999999999986653

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=92.71  E-value=0.054  Score=61.15  Aligned_cols=42  Identities=19%  Similarity=0.328  Sum_probs=33.1

Q ss_pred             CcEEEEecCC-CCCcccc------------CCCeEEEcccCCCCCeeEEEEEcCC
Q psy9228           2 AYIKWSRADG-LPLQRYA------------EGNVLRITNARLQDSGKYKCEIQGH   43 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~------------~~~~l~~~~~~~~d~g~y~c~~~~~   43 (834)
                      ++|+|.|.+. |+.....            ....|.|.+|+.+|+|.|.|.+.|.
T Consensus       258 p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~  312 (527)
T 3qs9_E          258 FGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH  312 (527)
T ss_dssp             CCEEEECSSSCCCGGGEEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE
T ss_pred             eEEEEEECCEECCCCceeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC
Confidence            4799999777 7664321            2346999999999999999999776

>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1, CD172B antigen, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.65  E-value=0.083  Score=47.21  Aligned_cols=24  Identities=25%  Similarity=0.378  Sum_probs=21.1

Q ss_pred             CCeEEEcccCCCCCeeEEEEEcCC
Q psy9228          20 GNVLRITNARLQDSGKYKCEIQGH   43 (834)
Q Consensus        20 ~~~l~~~~~~~~d~g~y~c~~~~~   43 (834)
                      ...|+|.+|+.+|+|+|.|.+.+.
T Consensus        78 ~~~L~I~~v~~~DsG~Y~C~~~~~  101 (136)
T 2d9c_A           78 DFSISISNITPADAGTYYCVKFRK  101 (136)
T ss_dssp             BCCEEESSCCTTTCEEEEEEEEEC
T ss_pred             EEEEEECCCCHHHCEEEEEEEEeC
Confidence            457999999999999999999653

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=92.63  E-value=0.052  Score=54.27  Aligned_cols=42  Identities=12%  Similarity=0.177  Sum_probs=31.8

Q ss_pred             CcEEEEecCC-CCCcc-----ccCCCeEEEcccCCCCCeeEEEEEcCC
Q psy9228           2 AYIKWSRADG-LPLQR-----YAEGNVLRITNARLQDSGKYKCEIQGH   43 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~-----~~~~~~l~~~~~~~~d~g~y~c~~~~~   43 (834)
                      ..+.|.|++. ++...     ...+..|.|.+|+.+|+|.|.|.+.+.
T Consensus        35 ~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   82 (242)
T 1p6f_A           35 VEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVG   82 (242)
T ss_dssp             CEEEEEETTEEEEEECCSSCTTCCEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             cEEEEEECCCccccccccccCCcceeEEEecCCCcccCeEEEEEEecC
Confidence            3689999665 54321     124678999999999999999999653

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=92.62  E-value=0.074  Score=53.64  Aligned_cols=25  Identities=28%  Similarity=0.559  Sum_probs=22.1

Q ss_pred             CCeEEEcccCCCCCeeEEEEEcCCC
Q psy9228          20 GNVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus        20 ~~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      +..|+|.+|+.+|+|.|.|.+.+..
T Consensus        83 ~~~L~I~~v~~~D~G~Y~C~~~~~~  107 (268)
T 3mj6_A           83 DGSLLLQDVQKADEGIYTCEIRLKN  107 (268)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEETT
T ss_pred             EEEEEECCCCHhHCEEEEEEEEecC
Confidence            3789999999999999999997643

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=92.58  E-value=0.095  Score=50.42  Aligned_cols=26  Identities=27%  Similarity=0.639  Sum_probs=22.7

Q ss_pred             CCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228          20 GNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus        20 ~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      +..|+|.+|+.+|+|.|.|.+.+..+
T Consensus        83 ~~~L~i~~v~~~D~G~Y~C~~~~~~~  108 (214)
T 3jz7_A           83 DASINVTNLQLSDIGTYQCKVKKAPG  108 (214)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEETTE
T ss_pred             cccEEEccCChhhCeEEEEEEEeCCC
Confidence            46799999999999999999976544

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=92.57  E-value=0.07  Score=57.35  Aligned_cols=44  Identities=20%  Similarity=0.270  Sum_probs=33.5

Q ss_pred             CcEEEEecCC-CCCc-ccc---CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQ-RYA---EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~-~~~---~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .++.|.|.+. +..+ ++.   .++.|.|.+|+.+|+|.|.|.+.|..+
T Consensus       133 ~~~~W~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~  181 (384)
T 3kld_A          133 LSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVT  181 (384)
T ss_dssp             EEEEEEETTEECCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEETTT
T ss_pred             eEEEEEECCCCCEeeccEEEEcCCCcEEEeecCHHHCceEEEEEecccc
Confidence            3689999555 4332 222   467899999999999999999987654

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=92.56  E-value=0.054  Score=52.49  Aligned_cols=24  Identities=21%  Similarity=0.365  Sum_probs=21.4

Q ss_pred             CeEEEcccCCCCCeeEEEEEcCCC
Q psy9228          21 NVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus        21 ~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      ..|+|.+|+.+|+|.|.|.+.+..
T Consensus        71 ~~L~I~~v~~~D~G~Y~C~~~~~~   94 (213)
T 3r06_A           71 SSFTISSLESEDIGSYYCQQYYNY   94 (213)
T ss_dssp             EEEEESSCCGGGCSEEEEEECSSS
T ss_pred             EEEEECCCCcccCEEEEEecccCC
Confidence            489999999999999999997654

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=92.55  E-value=0.085  Score=56.86  Aligned_cols=44  Identities=27%  Similarity=0.529  Sum_probs=34.9

Q ss_pred             CcEEEEecCC-CCCcccc----CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA----EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~----~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|.|.|.+. ++.....    .+..|.|.+++.+|+|.|.|.+.|..+
T Consensus       251 ~~~~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g  299 (403)
T 3laf_A          251 PSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNE  299 (403)
T ss_dssp             CEEEEEETTEECCCSSSSEEEETTTEEEECSCCGGGCEEEEEEEEETTE
T ss_pred             CeEEEEECCeeccCCCceEEECCccEEEEeCCCHHHCEEEEEEEEcCCC
Confidence            4799999666 6543322    467999999999999999999986654

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=92.55  E-value=0.085  Score=53.23  Aligned_cols=40  Identities=15%  Similarity=0.086  Sum_probs=30.8

Q ss_pred             CcEEEEecCC-CCCccc-------cCCCeEEEcccCCCCCeeEEEEEcCC
Q psy9228           2 AYIKWSRADG-LPLQRY-------AEGNVLRITNARLQDSGKYKCEIQGH   43 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~-------~~~~~l~~~~~~~~d~g~y~c~~~~~   43 (834)
                      .+|.|.|++. ++....       ..+..|.|.+|+  |+|.|.|.+.+.
T Consensus       135 ~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~--D~G~Y~C~a~~~  182 (257)
T 1b6u_A          135 DMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFR  182 (257)
T ss_dssp             SEEEEEETTSSCEECCBCBCCSSSCCBEEEEEEECC--SCEEEEEEEECS
T ss_pred             cEEEEEECCcccCcccccccccCCceeEEEEecccc--cCEEEEEEEEcC
Confidence            4789999777 654321       125789999998  999999999854

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=92.51  E-value=0.049  Score=55.75  Aligned_cols=43  Identities=26%  Similarity=0.455  Sum_probs=31.1

Q ss_pred             cEEEEecCC-CCCcccc--C---CCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           3 YIKWSRADG-LPLQRYA--E---GNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         3 ~~~w~~~~~-~~~~~~~--~---~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .|+|.|.+. |+.....  .   ...|+|.+++.+|+|.|.|.+.+..+
T Consensus        27 ~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g   75 (289)
T 3mjg_X           27 PVVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRG   75 (289)
T ss_dssp             CCEEEBTTBCCSEEEEECTTSCEEEEEEECSCCGGGCEEEEEECCC---
T ss_pred             eEEEECCCCCcccceeccCCCceeEEEEEccCChhhCEEEEEEEcccCC
Confidence            489999666 6433222  2   25899999999999999999987654

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=92.49  E-value=0.082  Score=52.55  Aligned_cols=25  Identities=32%  Similarity=0.629  Sum_probs=22.4

Q ss_pred             CeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228          21 NVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus        21 ~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ..|+|.+|+.+|+|.|.|.+.+..+
T Consensus        90 ~~L~I~~v~~~D~G~Y~C~~~~~~~  114 (250)
T 2fbo_J           90 PTLRLTHVHPQDGGRYWCQVAQWSI  114 (250)
T ss_dssp             CCEEECSCCGGGCEEEEEEEECTTC
T ss_pred             ceEEEeeCChhhCeEEEEEeccCcc
Confidence            5899999999999999999986654

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=92.49  E-value=0.083  Score=51.27  Aligned_cols=44  Identities=18%  Similarity=0.408  Sum_probs=32.0

Q ss_pred             CcEEEEecCC-CCCcc----cc--CCCeE----EEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQR----YA--EGNVL----RITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~----~~--~~~~l----~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.+. +....    +.  .++.+    +|.+++.+|+|.|.|.+.+..+
T Consensus        39 ~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~~~n~~g   93 (217)
T 2vr9_A           39 PTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVG   93 (217)
T ss_dssp             CEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEEEEEEETTE
T ss_pred             CeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEEEEEecCCC
Confidence            4799999655 66532    11  34444    6889999999999999976554

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=92.46  E-value=0.097  Score=56.12  Aligned_cols=44  Identities=30%  Similarity=0.512  Sum_probs=34.9

Q ss_pred             CcEEEEecCC-CCCccc--c------CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRY--A------EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~--~------~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.+. |+....  .      ....|+|.+++.+|+|.|.|.+.|..+
T Consensus       130 ~~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G  182 (389)
T 2jll_A          130 ASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIG  182 (389)
T ss_dssp             CEEEEEETTEESSCTTCTTEEEEECSSCEEEEECCCSTTSSEEEEEEEEETTE
T ss_pred             CeEEEEECCccCCcccCceEEEeccCCEEEEEECCCChhhCEEEEEEEEcCCC
Confidence            4799999666 776531  1      245799999999999999999987765

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=92.43  E-value=0.065  Score=56.12  Aligned_cols=44  Identities=16%  Similarity=0.312  Sum_probs=34.8

Q ss_pred             CcEEEEecCC-CCCcccc-------CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA-------EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~-------~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|.|.|.+. |+...+.       ....|.|.+|+.+|+|.|.|.+.+..+
T Consensus       153 ~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g  204 (334)
T 1ry7_B          153 PSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFG  204 (334)
T ss_dssp             CEEECCBTTBCCCTTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTE
T ss_pred             CeEEEEECCEECcccccccceecccceEEEEECCCCcccCEEEEEEEEeCCC
Confidence            4799999666 7654332       356899999999999999999987654

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=92.38  E-value=0.094  Score=56.18  Aligned_cols=44  Identities=23%  Similarity=0.315  Sum_probs=34.5

Q ss_pred             CcEEEEecCC--CCCccc----cCCCeEEEcccCCCC------CeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG--LPLQRY----AEGNVLRITNARLQD------SGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~--~~~~~~----~~~~~l~~~~~~~~d------~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.||  |.....    ..++.|.|.+++.+|      +|.|.|.+.+..+
T Consensus        34 p~v~W~k~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~~~~~d~G~Y~C~a~n~~g   89 (388)
T 2v5m_A           34 PEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFG   89 (388)
T ss_dssp             CEEEEEETTSCBCCCBTTTBEECSTTEEEECCCCGGGCCHHHHEEEEEEEEEETTE
T ss_pred             CEEEEEcCCCCccccCCCceEEcCCceEEecccChhhccccccCceEEEEEEccCC
Confidence            4799999666  654322    257899999999998      9999999987654

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=92.36  E-value=0.11  Score=55.81  Aligned_cols=44  Identities=25%  Similarity=0.487  Sum_probs=34.5

Q ss_pred             CcEEEEecCC-CCC---cccc---CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPL---QRYA---EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~---~~~~---~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|.|.|.+. ++.   ..+.   .++.|.|.+++.+|+|.|.|.+.+..+
T Consensus       151 ~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~  201 (403)
T 3laf_A          151 PTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPAS  201 (403)
T ss_dssp             CEEEEEESSSBCCCCTTCCSEEECTTSCEEECSCCGGGCEEEEEEEECSSC
T ss_pred             CeEEEEECCEeccccCCceEEEEcCCceEEEcccccccCEEEEEEEEcCCC
Confidence            4799999776 642   2221   467999999999999999999987654

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=92.36  E-value=0.085  Score=51.41  Aligned_cols=23  Identities=30%  Similarity=0.629  Sum_probs=21.1

Q ss_pred             CCeEEEcccCCCCCeeEEEEEcC
Q psy9228          20 GNVLRITNARLQDSGKYKCEIQG   42 (834)
Q Consensus        20 ~~~l~~~~~~~~d~g~y~c~~~~   42 (834)
                      +..|+|.+|+.+|+|.|.|.+.+
T Consensus        71 ~~sL~I~~v~~~D~G~Y~C~~~~   93 (222)
T 4i0k_A           71 NASLRLQRVRVTDEGSYTCFVSI   93 (222)
T ss_dssp             BCCEEECSCCGGGCSCEEEEEEE
T ss_pred             eEEEEECCcccccCEEEEEEEEe
Confidence            57899999999999999999964

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=92.36  E-value=0.071  Score=60.88  Aligned_cols=44  Identities=23%  Similarity=0.439  Sum_probs=35.1

Q ss_pred             CcEEEEecCC-CCCcccc------CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA------EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~------~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.+. |....+.      ....|.|.+|+.+|+|.|.|.+.|..+
T Consensus       321 p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g  371 (570)
T 3b43_A          321 IKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAG  371 (570)
T ss_dssp             CEEEEEETTEECCCSSSEEEEEETTEEEEEEESCCGGGCEEEEEEEEBTTB
T ss_pred             CEEEEeECCEECCCCCcEEEEEECCEEEEEECCCCcccCEEEEEEEEeCCC
Confidence            4799999666 7654332      245799999999999999999988765

>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus}

Probab=92.33  E-value=0.11  Score=55.08  Aligned_cols=69  Identities=26%  Similarity=0.612  Sum_probs=46.8

Q ss_pred             CCCCCE-eccCCCCC--ceEeeCCCCCCCCCCCC----------------CCCCccCCCCCC-C-eee-c----------
Q psy9228         146 CINNGL-CQDAATRI--GYTCICPPGFSGDRCSV----------------LGEPCYPGACGD-G-SCQ-D----------  193 (834)
Q Consensus       146 C~n~g~-C~~~~~~~--~~~C~C~~g~~G~~Ce~----------------~~~~C~~~~C~~-g-~C~-~----------  193 (834)
                      |.+++. |......+  .-.|.|..+++|.+||.                ..+.|.+-+|.+ + .|. +          
T Consensus       268 CnGHA~~C~~~~~~~~~~g~C~C~hnT~G~~CErC~pGy~g~p~~~at~~~~~~C~pC~Cnghs~~C~~d~~~~~~~~s~  347 (403)
T 2y38_A          268 CHGHADVCDAKDPLDPFRLQCACQHNTCGGSCDRCCPGFNQQPWKPATTDSANECQSCNCHGHAYDCYYDPEVDRREASQ  347 (403)
T ss_dssp             CTTBCSCEEESCTTSTTCEEECCCTTEESSSCCEECTTCCSSCCCCCCSSCCCCCCCCCCTTSCSCEEECHHHHHTTCCC
T ss_pred             cCCCccccCCCCCCCccceEeECcCcCcCCCCCCCCccccCCcccccccCCCccccccccCCCCcccccCcccccccccc
Confidence            555544 86321112  24699999999999985                124787767763 4 585 1          


Q ss_pred             -----CCCCeEEe-CCCCcccCccccc
Q psy9228         194 -----VDGAMKCL-CPIGTAGKRCEQK  214 (834)
Q Consensus       194 -----~~~~~~C~-C~~g~~G~~Ce~~  214 (834)
                           ..++..|. |..+++|.+||.-
T Consensus       348 ~~~~~~~~~G~C~~C~~nt~G~~CErC  374 (403)
T 2y38_A          348 NQDNVYQGGGVCLDCQHHTTGINCERC  374 (403)
T ss_dssp             CTTSCSCCCEEESSCCSSEESTTSCEE
T ss_pred             cccccCCCCCCCCCCcCcCcCCCCCcC
Confidence                 13577996 9999999999964

>4b1m_A Levanase; hydrolase, CBM66; HET: FRU; 1.10A {Bacillus subtilis} PDB: 4b1l_A* 4azz_A

Probab=92.31  E-value=1.7  Score=41.02  Aligned_cols=83  Identities=13%  Similarity=0.102  Sum_probs=54.7

Q ss_pred             eeEEEEEEEeeCC-----CCeeEEEeccCCccccCCCCCeEEEEEEC--cEEEEE-Eeccc-EEEE-eeeeecCCCeEEE
Q psy9228         405 LHFSIELSFKPTD-----YNGLIMYTGDSNMKSYKGKGDFVSFGLED--GYPVFR-FDVGL-VVLR-SKVTLVPHEWVVV  474 (834)
Q Consensus       405 ~~~~i~~~frt~~-----~~GlLl~~~~~~~~~~~~~~d~~~l~L~~--G~l~~~-~~~G~-~~i~-s~~~~~dg~wH~V  474 (834)
                      .++.+++.|+...     ..||+|....       +...+..+.+..  +++.+. +.-|. ..+. .+..+..|+||++
T Consensus        64 ~Df~le~dvk~~~~~~~g~~Gi~fR~~~-------d~~~gY~~~i~~~~~~~~l~k~~~g~~~~L~~~~~~~~~g~w~~l  136 (185)
T 4b1m_A           64 SDFTYESDITIKDGNGRGAGALMFRSDK-------DAKNGYLANVDAKHDLVKFFKFENGAASVIAEYKTPIDVNKKYHL  136 (185)
T ss_dssp             SSEEEEEEEEEEEEEEEEEEEEEEEECT-------TSSSEEEEEEETTTTEEEEEEEETTEEEEEEEEECCCCSSCCEEE
T ss_pred             cCEEEEEEEEEcCCCCcceEEEEEEEcC-------CCCCcEEEEEECCCCEEEEEEEeCCcEEEeeeccccCCCCCeEEE
Confidence            3466777776544     3467666522       235677777765  455443 33342 2232 2356888999999


Q ss_pred             EEEEECCeEEEEECCeeeee
Q psy9228         475 TIIKDFKEGKLSVGGEPLIV  494 (834)
Q Consensus       475 ~v~~~~~~~~l~VD~~~~~~  494 (834)
                      +|...+..+++.||+.....
T Consensus       137 ~I~~~G~~i~~~vnG~~v~~  156 (185)
T 4b1m_A          137 KTEAEGDRFKIYLDDRLVID  156 (185)
T ss_dssp             EEEEETTEEEEEETTEEEEE
T ss_pred             EEEEECCEEEEEECCEEEEE
Confidence            99999999999999976554

>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=92.31  E-value=0.057  Score=42.99  Aligned_cols=41  Identities=20%  Similarity=0.296  Sum_probs=29.1

Q ss_pred             CcEEEEecCC-CCCccccCCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYAEGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .+|+|.|.+. ++..   .+..|.|.++..+++|.|.|.+++..+
T Consensus        18 ~~i~W~k~~~~i~~~---~~~tL~L~~~~~d~sG~Y~C~~~~~~~   59 (79)
T 1xiw_B           18 TSITWVEGTVGTLLS---DITRLDLGKRILDPRGIYRCNGTDIYK   59 (79)
T ss_dssp             SCEEEEEECCCEEEG---GGTEEEEEEGGGCCEEEEEEC------
T ss_pred             CCEEEEECCcccccc---cCCeEEeccCcCCCCeEEEecCCCCCC
Confidence            4799999666 6542   468999999999999999998865543

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=92.28  E-value=0.11  Score=53.36  Aligned_cols=44  Identities=16%  Similarity=0.209  Sum_probs=35.1

Q ss_pred             CcEEEEecCC-CCCcccc------CCCeEEEcc-cCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA------EGNVLRITN-ARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~------~~~~l~~~~-~~~~d~g~y~c~~~~~~~   45 (834)
                      .+|.|.|.+. |+...+.      ....|.|.+ ++.+|+|.|.|.+.|..+
T Consensus       134 p~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G  185 (305)
T 2nzi_A          134 PVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFG  185 (305)
T ss_dssp             CEEEEEESSSBCCSSSSCEEEECSSEEEEEETTCCCSTTCEEEEEEEEETTE
T ss_pred             CEEEEEECCEECCCCCcEEEEEcCCceEEEEecCCccCccEEEEEEEEeCCC
Confidence            4799999666 7654333      346899999 999999999999987765

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=92.28  E-value=0.062  Score=57.68  Aligned_cols=44  Identities=32%  Similarity=0.570  Sum_probs=32.9

Q ss_pred             CcEEEEecC-C--CCCc-----ccc------CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRAD-G--LPLQ-----RYA------EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~-~--~~~~-----~~~------~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .+|+|.|.+ |  |...     .+.      .++.|+|.+|+.+|+|.|.|.+.|..+
T Consensus        30 p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g   87 (389)
T 2jll_A           30 PEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIG   87 (389)
T ss_dssp             CEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSC
T ss_pred             CeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEEEEEEeCCC
Confidence            479999962 4  5432     111      245899999999999999999988765

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=92.23  E-value=0.091  Score=60.86  Aligned_cols=44  Identities=25%  Similarity=0.359  Sum_probs=36.4

Q ss_pred             CcEEEEecCC-CCCcccc----CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA----EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~----~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .+|.|.|.+. |+...+.    .++.|+|.+|+.+|+|.|.|.+.|..+
T Consensus       496 ~~i~W~~~g~~l~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g  544 (642)
T 1e07_A          496 TTYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVS  544 (642)
T ss_pred             cEEEEEECCEeCCCCCcEEEcCCCcEEEEeecChhcCceEEEEeEcCCC
Confidence            5799999666 7765443    467999999999999999999988765

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=92.22  E-value=0.061  Score=57.59  Aligned_cols=44  Identities=23%  Similarity=0.384  Sum_probs=34.6

Q ss_pred             CcEEEEecCC-CCCcc--c--cCCCeEEEcccCC-CCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQR--Y--AEGNVLRITNARL-QDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~--~--~~~~~l~~~~~~~-~d~g~y~c~~~~~~~   45 (834)
                      ++|.|.|.+. |+...  +  ..++.|.|.++.. +|+|.|.|.+.+..+
T Consensus        37 ~~v~W~k~g~~~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a~n~~g   86 (382)
T 1cs6_A           37 ATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATNARG   86 (382)
T ss_dssp             CEEEEEETTEECCCSTTSSEEEETTEEEEESCCHHHHCEEEEEEEEETTE
T ss_pred             CEEEEEECCEECCcCCCccEEeeCCeEEEecccccccCEEEEEEEEcCCc
Confidence            5799999666 76532  1  2578999999997 999999999987654

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=92.18  E-value=0.11  Score=49.82  Aligned_cols=25  Identities=16%  Similarity=0.351  Sum_probs=22.4

Q ss_pred             CCeEEEcccCCCCCeeEEEEEcCCC
Q psy9228          20 GNVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus        20 ~~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      ++.|+|.+|+.+|+|.|.|.+.+..
T Consensus        70 ~~~L~i~~v~~~D~G~Y~C~~~~~~   94 (208)
T 3r4d_A           70 NGSLLFQMITMKDMGVYTLDMTDEN   94 (208)
T ss_dssp             TSCEEECSCCGGGCEEEEEEEECSS
T ss_pred             CCeEEEccccccCCeEEEEEEEccc
Confidence            5689999999999999999997664

>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*

Probab=92.13  E-value=0.1  Score=60.00  Aligned_cols=43  Identities=30%  Similarity=0.448  Sum_probs=34.9

Q ss_pred             CcEEEEecCC-CCCcc--cc--CCCeEEEcccCCCCCeeEEEEEcCCC
Q psy9228           2 AYIKWSRADG-LPLQR--YA--EGNVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~--~~--~~~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      |+|+|.+.+. |+...  ++  .++.|.|.+|+.+|+|.|.|.+.+..
T Consensus       562 a~v~W~~~~~~l~~~~~~~~~~~~~~LlI~~v~~~DsG~Y~C~A~e~~  609 (663)
T 1olz_A          562 ARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERV  609 (663)
T ss_dssp             CEEEEEESSSBCCCCSSSBCCTTTTCEEECSCCGGGCEEEEEEEEEEC
T ss_pred             CcEEEEECCeeccccCcceEEecCCeEEEEecCcccCeEEEEEEEECc
Confidence            6899999777 76432  22  47889999999999999999998763

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=92.09  E-value=0.12  Score=51.97  Aligned_cols=23  Identities=30%  Similarity=0.504  Sum_probs=21.0

Q ss_pred             CeEEEcccCCCCCeeEEEEEcCC
Q psy9228          21 NVLRITNARLQDSGKYKCEIQGH   43 (834)
Q Consensus        21 ~~l~~~~~~~~d~g~y~c~~~~~   43 (834)
                      ..|+|.+|+.+|+|.|.|.+.+.
T Consensus       196 ~~L~I~~v~~~DsG~Y~C~a~~~  218 (256)
T 1nqb_A          196 FTLKISRVEAEDLGVYYCFQGSH  218 (256)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSS
T ss_pred             EEEEECCCChHHCEEEEEEEccC
Confidence            47999999999999999999764

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=92.01  E-value=0.095  Score=53.56  Aligned_cols=43  Identities=19%  Similarity=0.209  Sum_probs=33.9

Q ss_pred             CcEEEEecCC--CCCcccc---CCCeEEEcccCCCCCe-eEEEEEcCCC
Q psy9228           2 AYIKWSRADG--LPLQRYA---EGNVLRITNARLQDSG-KYKCEIQGHD   44 (834)
Q Consensus         2 ~~~~w~~~~~--~~~~~~~---~~~~l~~~~~~~~d~g-~y~c~~~~~~   44 (834)
                      ++|+|.+.+|  |+...+.   .++.|.|.+++.+|+| .|.|.+.+..
T Consensus       121 ~~v~W~~~~g~~l~~~~~~~~~~~~~L~i~~v~~~d~G~~Y~C~a~n~~  169 (290)
T 2o26_X          121 SQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDG  169 (290)
T ss_dssp             EEEEEEETTSCCCCTTCEEEEETTTEEEEESCCGGGTTCEEEEEEEETT
T ss_pred             ceEEEEeCCCcCCCCCCceeeCCCCCEEEecccHHHCCCEEEEEEEECC
Confidence            5799954455  7765543   4679999999999999 9999998753

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=92.01  E-value=0.046  Score=54.49  Aligned_cols=44  Identities=14%  Similarity=0.237  Sum_probs=33.5

Q ss_pred             CcEEEEecCC-CCCccc-----cC------CCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRY-----AE------GNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~-----~~------~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .+|+|.|.++ ++....     ..      ...|+|.+++.+|+|.|.|.+.+..+
T Consensus        51 ~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~  106 (239)
T 1i1c_A           51 VRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAF  106 (239)
T ss_dssp             CEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSSS
T ss_pred             CEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCCCeEEEEEecccC
Confidence            3799999887 654211     11      23799999999999999999987655

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=91.99  E-value=0.11  Score=51.62  Aligned_cols=27  Identities=19%  Similarity=0.343  Sum_probs=23.4

Q ss_pred             CeEEEcccCCCCCeeEEEEEcCCCCcc
Q psy9228          21 NVLRITNARLQDSGKYKCEIQGHDSFR   47 (834)
Q Consensus        21 ~~l~~~~~~~~d~g~y~c~~~~~~~~~   47 (834)
                      ..|+|.+|+.+|+|.|.|.+.+...|.
T Consensus       200 ~~L~I~~v~~~D~G~Y~C~a~~~~~fG  226 (242)
T 2znx_A          200 YYLDLNSVTTEDTATYYCANXDGDYXG  226 (242)
T ss_dssp             EEEEECSCCGGGCEEEEEEETTSSCBC
T ss_pred             EEEEECCCCcCcCEEEEEeccCCcccC
Confidence            389999999999999999998765553

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=91.98  E-value=0.12  Score=55.44  Aligned_cols=44  Identities=23%  Similarity=0.395  Sum_probs=33.7

Q ss_pred             CcEEEEecCC-CCCcc------c--cCCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQR------Y--AEGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~------~--~~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.+. ++...      +  ..++.|.|.+++.+|+|.|.|.+.|..+
T Consensus       242 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g  294 (388)
T 2v5m_A          242 PSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVG  294 (388)
T ss_dssp             CEEEEEEECTTSSCEEECCCSSSEEEETTEEEESSCCGGGCEEEEEEEECSSC
T ss_pred             CEEEEEecCCCCcccccccccCceecccCEEEECcCCHHHCeEEEEEEecCCC
Confidence            4799999644 43211      1  1467999999999999999999988765

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=91.97  E-value=0.11  Score=52.92  Aligned_cols=39  Identities=21%  Similarity=0.279  Sum_probs=31.9

Q ss_pred             cEEEEecCC--CCCcccc---CCCeEEEcccCCCCCeeEEEEEc
Q psy9228           3 YIKWSRADG--LPLQRYA---EGNVLRITNARLQDSGKYKCEIQ   41 (834)
Q Consensus         3 ~~~w~~~~~--~~~~~~~---~~~~l~~~~~~~~d~g~y~c~~~   41 (834)
                      +|+|.|.++  ++...+.   .++.|.|.+++.+|+|.|.|.+.
T Consensus       121 ~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~  164 (289)
T 3ejj_X          121 SVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTM  164 (289)
T ss_dssp             SEEEEEGGGEECCTTCCEEEETTTEEEESSCCGGGCEEEEEEEE
T ss_pred             EEEEEecCCeecCCCccEEECCCCCEEEeecccccCEEEEEEEE
Confidence            499987677  6554443   47789999999999999999997

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=91.93  E-value=0.11  Score=49.97  Aligned_cols=25  Identities=24%  Similarity=0.522  Sum_probs=21.4

Q ss_pred             CCeEEEcccCCCCCeeEEEEEcCCC
Q psy9228          20 GNVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus        20 ~~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      +..|+|.+|+.+|+|.|.|.+.+..
T Consensus        78 ~~sL~I~~v~~~D~G~Y~C~~~~~~  102 (218)
T 4frw_A           78 DGSVLLRNAVQADEGEYECRVSTFP  102 (218)
T ss_dssp             BCCEEESSCCGGGCEEEEEEEEEET
T ss_pred             eEEEEEeeccHHHCCceeEEEEecc
Confidence            4579999999999999999986443

>1a8d_A Tetanus neurotoxin; clostridial, ganglioside binding region; 1.57A {Clostridium tetani} SCOP: b.29.1.6 b.42.4.2 PDB: 1af9_A 1fv3_A* 1fv2_A* 3hmy_A* 3hn1_A* 1d0h_A* 1dfq_A* 1dll_A* 1yxw_A* 1yyn_A* 1diw_A*

Probab=91.93  E-value=5  Score=42.25  Aligned_cols=130  Identities=15%  Similarity=0.221  Sum_probs=79.2

Q ss_pred             eeEEEEEEEeeCCCC---------e--eEEEeccCCccccCCCCCeEEEEEECcEEEEEEec--cc---EEEE-eeeeec
Q psy9228         405 LHFSIELSFKPTDYN---------G--LIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDV--GL---VVLR-SKVTLV  467 (834)
Q Consensus       405 ~~~~i~~~frt~~~~---------G--lLl~~~~~~~~~~~~~~d~~~l~L~~G~l~~~~~~--G~---~~i~-s~~~~~  467 (834)
                      ..|+|+|++|+...+         |  .|+-.....  - ....--..+.|.+..+.+.+..  |.   .... .+..++
T Consensus        85 ~dFSISFWvK~~k~~~~~i~~~~~~e~TIin~k~~n--~-~s~nsGW~I~l~gn~liw~l~Dsng~~~~i~f~~~~~~Is  161 (452)
T 1a8d_A           85 NNFTVSFWLRVPKVSASHLEQYGTNEYSIISSMKKH--S-LSIGSGWSVSLKGNNLIWTLKDSAGEVRQITFRDLPDKFN  161 (452)
T ss_dssp             SCEEEEEEEECCCCCHHHHHHHTTCEEEEEECCEEC--G-GGCEEEEEEEEETTEEEEEEECTTSCEEEEEEECCSBTTS
T ss_pred             CceEEEEEEECCCcCcccccccccCcceEEeeeccc--c-ccCCCCeEEEeCCCeEEEEEEcCCCceeeEEeccccccCc
Confidence            479999999998752         2  232111000  0 0012245667788888888755  21   2222 233344


Q ss_pred             ---CCCeEEEEEEEE-CCeEEEEECCeeeeeeecCCCccccccCCCceeec--cccCCCcccCcCcccccCceeEEeeeE
Q psy9228         468 ---PHEWVVVTIIKD-FKEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLG--GYNIYHVTPSLSVEVTEGFHGCISTID  541 (834)
Q Consensus       468 ---dg~wH~V~v~~~-~~~~~l~VD~~~~~~~~~~g~~~~~l~~~~~l~iG--G~~~~~~~~~~~~~~~~gF~GCi~~v~  541 (834)
                         +|+||+|+++.+ .....+.|||....+....+.  ..+.....+-+|  +...            .++.+.|.++.
T Consensus       162 d~~~nkW~fVtItvDR~g~~~IYING~Lv~s~~It~l--G~I~ss~~i~~gi~~~~d------------~~~~~~IDef~  227 (452)
T 1a8d_A          162 AYLANKWVFITITNDRLSSANLYINGVLMGSAEITGL--GAIREDNNITLKLDRCNN------------NNQYVSIDKFR  227 (452)
T ss_dssp             CSSSSSCEEEEEEECTTSEEEEEETTEEEEEEECTTC--CCCCCCSEEEEEEESCCC------------TTCEEEEEEEE
T ss_pred             cccCCeEEEEEEEECCCCCEEEEECCEEeeccchhhc--cceeecCeEEEEEcccCC------------CcccceEeeEE
Confidence               699999999988 446699999988777654432  233334444444  4433            45778999999


Q ss_pred             EcCeeeeecc
Q psy9228         542 VLGSELDLIN  551 (834)
Q Consensus       542 ing~~~~~~~  551 (834)
                      |=.++++-.+
T Consensus       228 Iynk~Lt~~E  237 (452)
T 1a8d_A          228 IFCKALNPKE  237 (452)
T ss_dssp             EESSCCCHHH
T ss_pred             EecccCCHHH
Confidence            9877776554

>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate immunity, immunoglobulin-like I2 type natural killer cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB: 3pv6_B*

Probab=91.87  E-value=0.13  Score=44.87  Aligned_cols=21  Identities=29%  Similarity=0.586  Sum_probs=19.7

Q ss_pred             CeEEEcccCCCCCeeEEEEEc
Q psy9228          21 NVLRITNARLQDSGKYKCEIQ   41 (834)
Q Consensus        21 ~~l~~~~~~~~d~g~y~c~~~   41 (834)
                      ..|+|.+|+.+|+|+|.|.+.
T Consensus        81 ~sL~I~~v~~~DsG~Y~C~v~  101 (120)
T 3noi_A           81 AELHIRDVRGHDASIYVCRVE  101 (120)
T ss_dssp             CCEEESSCCGGGCEEEEEEEE
T ss_pred             EEEEEecCChhhCEEEEEEEE
Confidence            479999999999999999996

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=91.85  E-value=0.14  Score=50.40  Aligned_cols=23  Identities=26%  Similarity=0.354  Sum_probs=15.9

Q ss_pred             eEEEcccCCCCCeeEEEEEcCCC
Q psy9228          22 VLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus        22 ~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      .|+|.+|+.+|+|.|.|.+.+..
T Consensus        94 ~L~I~~v~~~D~G~Y~C~~~~~~  116 (233)
T 3bqu_C           94 VFTIENMLSEDVADYYCLQSDNL  116 (233)
T ss_dssp             EEC-----CCCCSEEEEEECSSS
T ss_pred             EEEECCCCHHHCEEEEEEEecCC
Confidence            79999999999999999997654

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=91.85  E-value=0.095  Score=62.69  Aligned_cols=44  Identities=25%  Similarity=0.445  Sum_probs=35.8

Q ss_pred             CcEEEEecCC-CCCccc---------cCCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRY---------AEGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~---------~~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.++ +|....         ..++.|.|.+|+.+|+|.|.|.+.|..|
T Consensus       744 p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G  797 (816)
T 3dmk_A          744 PQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIG  797 (816)
T ss_dssp             CEEECCEECSSSTTCCBCCCCBTTEEEETTEEEECSCCGGGCEEEEEEEECSSS
T ss_pred             CeEEEEecCCCCCccccccccCCCEEecCCEEEECcCChhhCeEEEEEEEeCCC
Confidence            4799999776 664321         1467899999999999999999998876

>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L*

Probab=91.83  E-value=0.07  Score=41.21  Aligned_cols=32  Identities=28%  Similarity=0.644  Sum_probs=24.3

Q ss_pred             CCCCCCEeccCCCCC-ceEeeCCCCCC----CCCCCCCCCCc
Q psy9228         145 NCINNGLCQDAATRI-GYTCICPPGFS----GDRCSVLGEPC  181 (834)
Q Consensus       145 pC~n~g~C~~~~~~~-~~~C~C~~g~~----G~~Ce~~~~~C  181 (834)
                      .|.+  .|++.+  + +|+|.|++||.    |..| .++++|
T Consensus        14 gC~h--~C~n~~--g~s~~C~C~~Gy~L~~D~~tC-~d~dec   50 (69)
T 1kli_L           14 GCEQ--YCSDHT--GTKRSCRCHEGYSLLADGVSC-TPTVEY   50 (69)
T ss_dssp             GCSS--EEEEET--TTEEEEECCTTEEECTTSSCE-EECSSS
T ss_pred             CcCC--EeEcCC--CCCEEEeCCCCCeECCCCCcc-cCcccc
Confidence            4665  688876  6 79999999995    6788 456665

>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen, glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A {Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4

Probab=91.82  E-value=0.36  Score=39.83  Aligned_cols=69  Identities=20%  Similarity=0.526  Sum_probs=52.2

Q ss_pred             CCCCCCCCCCCCeecccCCCCCceeeecCCCCC--CCCCccCccC-CCCCC-ccCCCceeeecC-CCcEEcCCCCCC
Q psy9228         569 PVCAPKPCQNYGICYPTDTSERGYNCSCLTGYS--GDHCEKENNM-CMKGD-VCKNGGMCKVTP-DSYECLCSLGYA  640 (834)
Q Consensus       569 ~~C~~~pC~ngg~C~~~~~~~~~~~C~C~~G~~--G~~Ce~~~~~-C~~~~-pC~ngg~C~~~~-~~~~C~C~~g~~  640 (834)
                      ..|...-|.-++.|....+  +..+|.|..||+  |..|... ++ |..++ -|...+.|.... +...|.|..+|+
T Consensus        11 h~C~~t~Cp~NA~C~r~~~--G~e~CrCl~gY~~dg~~Cv~~-Np~C~~nNGGCd~nAeC~~~~~~ki~C~C~~~~~   84 (105)
T 1n1i_A           11 HKCIDTNVPENAACYRYLD--GTEEWRCLLGFKEVGGKCVPA-SITCEENNGGCAPEAECTMDDKKEVECKCTKEGS   84 (105)
T ss_dssp             TSCCSSCCCTTEEEEECTT--SCEEEEECTTEEECSSSEEEC-CCCTTSGGGGSCTTSEEEECTTSCEEEECCSTTC
T ss_pred             cEecCCCCCCCCCeEECCC--CCEeEEEECCeeccCCEEEEC-CcchhhcCCCcCCCcEeEECCCCEEEeECCCCCC
Confidence            4566666777899987544  488999999998  5678877 66 65431 477789998875 899999998763

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=91.82  E-value=0.15  Score=52.02  Aligned_cols=26  Identities=35%  Similarity=0.707  Sum_probs=23.9

Q ss_pred             CCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228          20 GNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus        20 ~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ...|.|.+|+.+|+|.|.|.+.|..+
T Consensus       241 ~~~L~I~~v~~~D~G~Y~C~a~N~~G  266 (289)
T 3mjg_X          241 RSILHIPSAELEDSGTYTCNVTESVN  266 (289)
T ss_dssp             EEEEEESSCCSSCCEEEEEEEEETTT
T ss_pred             EEEEEEcccChhhCcEEEEEeecCCC
Confidence            36999999999999999999998876

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=91.81  E-value=0.088  Score=52.44  Aligned_cols=25  Identities=28%  Similarity=0.690  Sum_probs=21.6

Q ss_pred             CCeEEEcccCCCCCeeEEEEEcCCC
Q psy9228          20 GNVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus        20 ~~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      +..|+|.+|+.+|+|.|.|.+.+..
T Consensus        81 ~~sL~I~~v~~~D~G~Y~C~~~~~~  105 (248)
T 3pv7_A           81 DASLRLPGIQLEEAGEYRCEVVVTP  105 (248)
T ss_dssp             BCCEEESSCCGGGCEEEEEEEEETT
T ss_pred             cEEEEeCCCCHHHCeEEEEEEEeCC
Confidence            3459999999999999999997654

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=91.81  E-value=0.13  Score=55.17  Aligned_cols=44  Identities=18%  Similarity=0.320  Sum_probs=33.7

Q ss_pred             CcEEEEecCC-CCCccc--c------CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRY--A------EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~--~------~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.+. |+....  .      .+..|.|.+++.+|+|.|.|.+.|..+
T Consensus       242 ~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g  294 (395)
T 1bih_A          242 GYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVG  294 (395)
T ss_dssp             CCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSS
T ss_pred             CeEEEEECCEEcCCCCceeEEEEecCCCceEEEccCChhhCEEEEEEEEeCCC
Confidence            4789999666 654321  1      234899999999999999999987765

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=91.81  E-value=0.14  Score=59.34  Aligned_cols=44  Identities=25%  Similarity=0.444  Sum_probs=36.6

Q ss_pred             CcEEEEecCC-CCCcccc----CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA----EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~----~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .+|+|.|.+. |+...+.    .++.|+|.+++.+|+|.|.|.+.|..+
T Consensus       318 ~~v~W~~~g~~l~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g  366 (642)
T 1e07_A          318 TTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELS  366 (642)
T ss_pred             ccEEEEECCccCCCcCCEEEeCCCCEEEEeccCcccCeeEEEEEeCCCC
Confidence            4799999666 8775443    468999999999999999999988765

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=91.78  E-value=0.1  Score=51.45  Aligned_cols=25  Identities=24%  Similarity=0.409  Sum_probs=22.1

Q ss_pred             CeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228          21 NVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus        21 ~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ..|+|.+|+.+|+|.|.|.+.|..+
T Consensus       199 ~~L~I~~v~~~D~G~Y~C~a~n~~~  223 (238)
T 2p1y_A          199 LSLHIADSQPGDSATYFCAAIDTNA  223 (238)
T ss_dssp             EEEEETTCCGGGCEEEEEEEEETTT
T ss_pred             EEEEEcCCCHHHCEEEEEEEeeCCC
Confidence            5899999999999999999976543

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=91.78  E-value=0.079  Score=51.61  Aligned_cols=24  Identities=25%  Similarity=0.333  Sum_probs=21.6

Q ss_pred             CeEEEcccCCCCCeeEEEEEcCCC
Q psy9228          21 NVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus        21 ~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      ..|+|.+|+.+|+|.|.|.+.+..
T Consensus        79 ~~L~I~~v~~~D~G~Y~C~~~~~~  102 (219)
T 1c1e_H           79 AYLQINNLKNEDMATYFCARGTTI  102 (219)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEETT
T ss_pred             EEEEECCCCcccCEEEEEEEeccC
Confidence            589999999999999999997654

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=91.78  E-value=0.091  Score=51.46  Aligned_cols=25  Identities=20%  Similarity=0.426  Sum_probs=22.2

Q ss_pred             CCeEEEcccCCCCCeeEEEEEcCCC
Q psy9228          20 GNVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus        20 ~~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      ++.|+|.+|+.+|+|.|.|.+.+..
T Consensus        76 ~~~L~i~~v~~~D~G~Y~C~~~~~~  100 (231)
T 2pet_A           76 QGRLVLAEAQVGDERDYVCVVRAGA  100 (231)
T ss_dssp             TCCEEESSCCGGGCEEEEEEEECGG
T ss_pred             CceEEEcccCcccCceEEEEEEecC
Confidence            4669999999999999999997664

>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus musculus} PDB: 3a7q_A*

Probab=91.78  E-value=0.16  Score=57.37  Aligned_cols=47  Identities=17%  Similarity=0.455  Sum_probs=37.6

Q ss_pred             ecCCCCCCCCCccCccCCCCCCccCCCceeeecCCCcEEcCCCCCCCCCccccc
Q psy9228         595 SCLTGYSGDHCEKENNMCMKGDVCKNGGMCKVTPDSYECLCSLGYAPPNCAKRV  648 (834)
Q Consensus       595 ~C~~G~~G~~Ce~~~~~C~~~~pC~ngg~C~~~~~~~~C~C~~g~~G~~Ce~~~  648 (834)
                      .|.+||+|+.|.+. ..|. . .|...|.|++.    .|.|.+||.|..|+...
T Consensus       521 ~C~~gw~g~dc~i~-~~Cp-~-~C~ghG~C~~G----~C~Cd~G~~G~~C~~~~  567 (725)
T 2e26_A          521 DKQQTWAIDNVYIG-DGCL-D-MCSGHGRCVQG----SCVCDEQWGGLYCDEPE  567 (725)
T ss_dssp             CTTCCEEEEEEEEE-SCSS-G-GGGGSEEEETT----EEEECTTEESTTSCEES
T ss_pred             ccCCCccccccccc-CCCC-c-ccCCCcEECCC----CEeeCCCccCCCcCccC
Confidence            67899999999853 3563 2 78889999864    79999999999998653

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=91.77  E-value=0.12  Score=50.98  Aligned_cols=25  Identities=20%  Similarity=0.299  Sum_probs=21.9

Q ss_pred             CCeEEEcccCCCCCeeEEEEEcCCC
Q psy9228          20 GNVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus        20 ~~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      +..|+|.+|+.+|+|.|.|.+.+..
T Consensus        93 ~~~L~I~~v~~~D~G~Y~C~~~~~~  117 (237)
T 3sob_L           93 DFTLTISSLQPEDFATYYCQQSYTT  117 (237)
T ss_dssp             EEEEEESSCCGGGCEEEEEEECSSS
T ss_pred             EEEEEECCCChhhCeEEEEeeccCC
Confidence            4579999999999999999997654

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=91.73  E-value=0.13  Score=51.04  Aligned_cols=24  Identities=21%  Similarity=0.289  Sum_probs=21.3

Q ss_pred             CeEEEcccCCCCCeeEEEEEcCCC
Q psy9228          21 NVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus        21 ~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      ..|+|.+|+.+|+|.|.|.+.+..
T Consensus       205 ~~L~I~~v~~~D~G~Y~C~a~~~~  228 (247)
T 2ghw_B          205 FTLTISRLEPEDFAVYYCQQRSNW  228 (247)
T ss_dssp             EEEEECSCCGGGCEEEEEEECSSS
T ss_pred             EEEEECcCCHHHCEEEEEEEccCC
Confidence            469999999999999999997654

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=91.73  E-value=0.073  Score=51.82  Aligned_cols=22  Identities=45%  Similarity=0.824  Sum_probs=20.6

Q ss_pred             CeEEEcccCCCCCeeEEEEEcC
Q psy9228          21 NVLRITNARLQDSGKYKCEIQG   42 (834)
Q Consensus        21 ~~l~~~~~~~~d~g~y~c~~~~   42 (834)
                      ..|+|.+|+.+|+|.|.|.+.+
T Consensus        80 ~~L~I~~v~~~D~G~Y~C~~~~  101 (222)
T 3sbw_C           80 AALQITDVKLQDAGVYRCMISY  101 (222)
T ss_dssp             EEEEESSCCGGGCEEEEEEEES
T ss_pred             EEEEEcCcccccCeEEEEEEEe
Confidence            4899999999999999999976

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=91.65  E-value=0.12  Score=49.79  Aligned_cols=24  Identities=21%  Similarity=0.354  Sum_probs=21.6

Q ss_pred             eEEEcccCCCCCeeEEEEEcCCCC
Q psy9228          22 VLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus        22 ~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .|+|.+|+.+|+|.|.|.+.+..+
T Consensus        71 ~L~I~~v~~~D~G~Y~C~~~~~~~   94 (210)
T 1lk3_L           71 TLTIDPVEADDTAIYFCQQSWNGP   94 (210)
T ss_dssp             EEEESSCCGGGCEEEEEEECSSSS
T ss_pred             EEEECCCCHHHCeEEEEEEEcCCC
Confidence            899999999999999999976543

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=91.61  E-value=0.12  Score=51.73  Aligned_cols=23  Identities=22%  Similarity=0.368  Sum_probs=21.2

Q ss_pred             eEEEcccCCCCCeeEEEEEcCCC
Q psy9228          22 VLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus        22 ~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      .|+|.+|+.+|+|.|.|.+.+..
T Consensus       208 ~L~I~~v~~~DsG~Y~C~~~n~~  230 (253)
T 3uzq_A          208 TLTINPVEADDVATYFCQRSNEV  230 (253)
T ss_dssp             EEEESSCCGGGCEEEEEEECSSS
T ss_pred             EEEECCCCHHHCEEEEEEEccCC
Confidence            69999999999999999998765

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=91.54  E-value=0.12  Score=49.94  Aligned_cols=24  Identities=29%  Similarity=0.512  Sum_probs=21.1

Q ss_pred             CeEEEcccCCCCCeeEEEEEcCCC
Q psy9228          21 NVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus        21 ~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      ..|+|.+|+.+|+|.|.|.+.+..
T Consensus        82 ~sL~I~~v~~~D~G~Y~C~~~~~~  105 (214)
T 2zg1_A           82 CSLSIGDARMEDTGSYFFRVERGR  105 (214)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEETT
T ss_pred             EEEEEccCCHhhCceEEEEEEcCC
Confidence            479999999999999999997543

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=91.53  E-value=0.09  Score=52.71  Aligned_cols=23  Identities=22%  Similarity=0.317  Sum_probs=20.7

Q ss_pred             eEEEcccCCCCCeeEEEEEcCCC
Q psy9228          22 VLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus        22 ~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      .|+|.+|+.+|+|.|.|.+.+..
T Consensus       214 ~L~I~~v~~~DsG~Y~C~~~~~~  236 (256)
T 3ux9_B          214 YLQMNSLRAEDTAVYYCARYIDF  236 (256)
T ss_dssp             EEEECSCCGGGCEEEEEEEEETT
T ss_pred             EEEECCCChhhCEEEEEEEEcCC
Confidence            49999999999999999997653

>2jjs_C Leukocyte surface antigen CD47; signal regulatory protein alpha, immunoglobulin superfamily, transmembrane, phosphoprotein, paired receptor; HET: NAG; 1.85A {Homo sapiens} PDB: 2jjt_C* 2vsc_A*

Probab=91.45  E-value=0.055  Score=47.42  Aligned_cols=25  Identities=20%  Similarity=0.551  Sum_probs=21.7

Q ss_pred             CCeEEEcccCC-CCCeeEEEEEcCCC
Q psy9228          20 GNVLRITNARL-QDSGKYKCEIQGHD   44 (834)
Q Consensus        20 ~~~l~~~~~~~-~d~g~y~c~~~~~~   44 (834)
                      +..|+|.+++. +|+|.|.|..+...
T Consensus        77 naSL~i~~v~~~sD~G~YtC~v~~~~  102 (127)
T 2jjs_C           77 DASLKMDKSDAVSHTGNYTCEVTELT  102 (127)
T ss_dssp             BCCEEEEHHHHHTSCEEEEEEEEETT
T ss_pred             cEEEEEcccccccCCcEEEEEEEeCC
Confidence            36999999999 79999999997554

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=91.37  E-value=0.11  Score=50.50  Aligned_cols=23  Identities=26%  Similarity=0.397  Sum_probs=21.2

Q ss_pred             eEEEcccCCCCCeeEEEEEcCCC
Q psy9228          22 VLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus        22 ~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      .|+|.+|+.+|+|.|.|.+.+..
T Consensus        73 ~L~I~~v~~~D~G~Y~C~~~~~~   95 (216)
T 2xzc_L           73 TLGITGLQTGDEADYYCGTWDSS   95 (216)
T ss_dssp             EEEECSCCGGGCEEEEEEEECTT
T ss_pred             EEEECCCCcccCEEEEEEEEeCC
Confidence            79999999999999999997654

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=91.34  E-value=0.1  Score=50.52  Aligned_cols=44  Identities=16%  Similarity=0.251  Sum_probs=32.0

Q ss_pred             CcEEEEecCC-CCCc-ccc--CC------CeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQ-RYA--EG------NVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~-~~~--~~------~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      +.+.|.|.++ ++.. ...  .+      +.|+|.+++.+|+|.|+|.++|..+
T Consensus       152 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~  205 (225)
T 4fmk_A          152 ARITWISSLGGEAKDTQEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESF  205 (225)
T ss_dssp             CEEEEECSSCCEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTC
T ss_pred             CEEEEEECCccccCCcceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCC
Confidence            4788998666 3332 222  22      2599999999999999999987643

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=91.34  E-value=0.097  Score=50.80  Aligned_cols=24  Identities=25%  Similarity=0.421  Sum_probs=21.1

Q ss_pred             CeEEEcccCCCCCeeEEEEEcCCC
Q psy9228          21 NVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus        21 ~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      ..|+|.+|+.+|+|.|.|.+.+..
T Consensus        75 ~~L~I~~v~~~D~G~Y~C~~~~~~   98 (218)
T 3s96_B           75 RYLSISNIQPEDEAIYICGVGDTI   98 (218)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEEEE
T ss_pred             EEEEEccCCcccCEEEEEEEecCC
Confidence            469999999999999999996544

>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A

Probab=91.34  E-value=0.11  Score=44.41  Aligned_cols=25  Identities=28%  Similarity=0.504  Sum_probs=21.9

Q ss_pred             CCCeEEEcccCCCCCeeEEEEEcCC
Q psy9228          19 EGNVLRITNARLQDSGKYKCEIQGH   43 (834)
Q Consensus        19 ~~~~l~~~~~~~~d~g~y~c~~~~~   43 (834)
                      ....|+|.+|+.+|+|.|.|.+.+.
T Consensus        71 ~~~sL~I~~v~~~DsG~Y~C~v~~~   95 (110)
T 2ptt_A           71 NNGALHISNVRKEDKGTYYMRVLRE   95 (110)
T ss_dssp             TTCCEEESSCCGGGCEEEEEEEESS
T ss_pred             CCccEEECCCCcccCeEEEEEEEcC
Confidence            3568999999999999999999644

>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=91.32  E-value=0.048  Score=50.48  Aligned_cols=45  Identities=24%  Similarity=0.457  Sum_probs=32.6

Q ss_pred             CCCCCCCCCCCCCccC---CCCCCCeeecCCCCeEEeCCCCcc----cCcccc
Q psy9228         168 GFSGDRCSVLGEPCYP---GACGDGSCQDVDGAMKCLCPIGTA----GKRCEQ  213 (834)
Q Consensus       168 g~~G~~Ce~~~~~C~~---~~C~~g~C~~~~~~~~C~C~~g~~----G~~Ce~  213 (834)
                      ||.......++++|..   .+|. ..|.+..++|.|.|++||.    |..|+.
T Consensus       107 GF~~~y~~~d~~eC~~~~~~~C~-~~C~n~~g~~~C~C~~Gy~l~~~~~~C~~  158 (159)
T 1nzi_A          107 GFAAYYVATDINECTDFVDVPCS-HFCNNFIGGYFCSCPPEYFLHDDMKNCGV  158 (159)
T ss_dssp             EEEEEEEEEECCTTTC-CCCCSS-SEEEEETTEEEEECCTTCEECTTSSCEEC
T ss_pred             cceeeeecccCcccCCCCCCCCC-CcccCcCCCEEEecCCCcEECCCCCcccc
Confidence            3333333356788875   3575 4899999999999999998    777763

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=91.31  E-value=0.11  Score=55.37  Aligned_cols=24  Identities=33%  Similarity=0.625  Sum_probs=21.8

Q ss_pred             CCeEEEcccCCCCCeeEEEEEcCC
Q psy9228          20 GNVLRITNARLQDSGKYKCEIQGH   43 (834)
Q Consensus        20 ~~~l~~~~~~~~d~g~y~c~~~~~   43 (834)
                      +..|+|.+|+.+|+|.|.|.+.+.
T Consensus        66 ~~~L~I~~v~~~D~G~Y~C~~~n~   89 (363)
T 1wio_A           66 NFPLIIKNLKIEDSDTYICEVEDQ   89 (363)
T ss_dssp             CCCEEECSCCGGGCEEEEEEETTE
T ss_pred             eEEEEECCCCHHHCEEEEEEEEEC
Confidence            567999999999999999999765

>2jkb_A Sialidase B; intramolecular trans-sialidase, lyase, glycosidase, neuraminidase; HET: SKD; 1.54A {Streptococcus pneumoniae} PDB: 2vw2_A* 2vw1_A* 2vw0_A*

Probab=91.27  E-value=5.6  Score=45.83  Aligned_cols=137  Identities=15%  Similarity=0.091  Sum_probs=84.3

Q ss_pred             eeEEEEEEEeeCCCCe--eEEEeccCCccccCCCCCeEEEEEE-CcEEEEEEec--ccE--EEEeeeeec---CC--CeE
Q psy9228         405 LHFSIELSFKPTDYNG--LIMYTGDSNMKSYKGKGDFVSFGLE-DGYPVFRFDV--GLV--VLRSKVTLV---PH--EWV  472 (834)
Q Consensus       405 ~~~~i~~~frt~~~~G--lLl~~~~~~~~~~~~~~d~~~l~L~-~G~l~~~~~~--G~~--~i~s~~~~~---dg--~wH  472 (834)
                      .+++|.|+|++.....  -||-..+...   .....++.+.|. +|++.+.+.-  |..  .+..+..+.   .|  .||
T Consensus        57 ~~~T~~~~~~~~~~~~~~~lfs~sn~~~---~~~~~~~~~~i~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (686)
T 2jkb_A           57 ESQTVVMKFKADKPNSLQALFGLSNSKA---GFKNNYFSIFMRDSGEIGVEIRDAQKGINYLFSRPASLWGKHKGQAVEN  133 (686)
T ss_dssp             SCEEEEEEEECSSCCSEEEEEEEECCST---TCTTCEEEEEEETTSCEEEEEEETTTTEEEEEEESSCCCCEETTEECCE
T ss_pred             CceEEEEEEEccCCCCeeEEEEeecCcc---cccCcceEEEEcCCCeEEEEEecCCCCeeeeccccccccccccCCccee
Confidence            4589999999877542  3333322210   123578999996 7777666542  322  333333444   46  799


Q ss_pred             EEEEEEE--CCeEEEEECCeeeeeeecCC-CccccccCCCceeeccccCCCcccCcCcccccCceeEEeeeEEcCeeeee
Q psy9228         473 VVTIIKD--FKEGKLSVGGEPLIVGSTPG-EKLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDL  549 (834)
Q Consensus       473 ~V~v~~~--~~~~~l~VD~~~~~~~~~~g-~~~~~l~~~~~l~iGG~~~~~~~~~~~~~~~~gF~GCi~~v~ing~~~~~  549 (834)
                      +|.+..+  .+.++|+|||.......... .....+.--..+.||++....      .. .-.|.|-|.++.|-...+..
T Consensus       134 ~va~~~d~~~~~~~lyvnG~~v~~~~~~~~~~~~~~~~~~~~~iG~~~~~g------~~-~~~f~G~id~~~iy~~~Ls~  206 (686)
T 2jkb_A          134 TLVFVSDSKDKTYTMYVNGIEVFSETVDTFLPISNINGIDKATLGAVNREG------KE-HYLAKGSIDEISLFNKAISD  206 (686)
T ss_dssp             EEEEEEETTTTEEEEEETTEEEEEEECSSCCCGGGSTTCCEEEESSEEETT------EE-ESCCEEEEEEEEEESSCCCH
T ss_pred             EEEEEEECCCCeEEEEECCEEEEeecccccceeccCCCcceeeecccccCC------cc-cccccceEeEEEEecCCCCH
Confidence            9999998  66999999998887654332 101122222467889854321      11 12599999999998776655


Q ss_pred             cc
Q psy9228         550 IN  551 (834)
Q Consensus       550 ~~  551 (834)
                      .+
T Consensus       207 ~e  208 (686)
T 2jkb_A          207 QE  208 (686)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=91.26  E-value=0.085  Score=52.76  Aligned_cols=23  Identities=30%  Similarity=0.507  Sum_probs=21.2

Q ss_pred             eEEEcccCCCCCeeEEEEEcCCC
Q psy9228          22 VLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus        22 ~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      .|+|.+|+.+|+|.|.|.+.+..
T Consensus       114 ~L~I~~v~~~D~G~Y~C~a~n~~  136 (254)
T 2c1o_A          114 TLKISRVEAEDLGIYYCVQGSHF  136 (254)
T ss_dssp             EEEESSCCGGGCSEEEEEECSSS
T ss_pred             EEEECcCCcccCEEEEEEEEcCc
Confidence            79999999999999999997654

>2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B* 1yuk_A* 2p28_A*

Probab=91.25  E-value=0.099  Score=52.75  Aligned_cols=61  Identities=28%  Similarity=0.747  Sum_probs=43.6

Q ss_pred             CCCCCCCEeccCCCCCceEeeCCCCCCCCCCCCCCC---------CccCC----CCC-CCeeecCCCCeEEeCCCC----
Q psy9228         144 NNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGE---------PCYPG----ACG-DGSCQDVDGAMKCLCPIG----  205 (834)
Q Consensus       144 ~pC~n~g~C~~~~~~~~~~C~C~~g~~G~~Ce~~~~---------~C~~~----~C~-~g~C~~~~~~~~C~C~~g----  205 (834)
                      .+|..+|+|.-.      .|.|.+||.|.+|+-..+         .|...    .|. +|+|+-.    .|.|..+    
T Consensus       196 ~~C~g~G~~~CG------~C~C~~g~~G~~CeC~~~~~~~~~~~~~C~~~~~~~~CSgrG~C~CG----~C~C~~~~~~~  265 (280)
T 2p26_A          196 SLCHGKGFLECG------ICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCG----QCLCHTSDVPG  265 (280)
T ss_dssp             TGGGGSEEEETT------EEEECTTEESTTSCEECTTSCHHHHHHTTCSSTTSCGGGGSEEEETT----EEEECCCSSTT
T ss_pred             CccCCCCeECCC------ceeCCCCCcCCcceecCCccccccccccCCCCCCCCccCCCceEeCC----eeECcCCCCCC
Confidence            347767777753      699999999999984322         68632    476 4888764    7999655    


Q ss_pred             --cccCccccc
Q psy9228         206 --TAGKRCEQK  214 (834)
Q Consensus       206 --~~G~~Ce~~  214 (834)
                        |+|..||..
T Consensus       266 ~~~~G~~~~~~  276 (280)
T 2p26_A          266 KLIYGQYCEHH  276 (280)
T ss_dssp             CEEESTTSCEE
T ss_pred             eeEeeEecccc
Confidence              578888864

>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A

Probab=91.23  E-value=0.093  Score=44.77  Aligned_cols=27  Identities=30%  Similarity=0.640  Sum_probs=23.1

Q ss_pred             CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228          19 EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus        19 ~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++..|+|.+|+.+|+|.|.|...+..+
T Consensus        67 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~   93 (110)
T 1ncn_A           67 DSWTLRLHNLQIKDKGLYQCIIHHKKP   93 (110)
T ss_dssp             TTTEEEECSCCGGGCEEEEEEEEEECS
T ss_pred             CCEEEEEcCCChHHCEEEEEEEEcCCC
Confidence            357899999999999999999976543

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=91.15  E-value=0.13  Score=51.68  Aligned_cols=24  Identities=21%  Similarity=0.337  Sum_probs=21.4

Q ss_pred             CeEEEcccCCCCCeeEEEEEcCCC
Q psy9228          21 NVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus        21 ~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      ..|+|.+|+.+|+|.|.|.+.|..
T Consensus       209 ~~L~I~~v~~~D~G~Y~C~a~n~~  232 (257)
T 1f3r_B          209 YTLTISSLQPEDVATYFCYQYNNG  232 (257)
T ss_dssp             EEEEECSCCGGGCSEEEEEEESSS
T ss_pred             EEEEECCCChhhCEEEEEEEeCCC
Confidence            479999999999999999997653

>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion molecule, virus entry receptor, STR genomics, PSI-biology; 1.30A {Homo sapiens} PDB: 4dfh_A 4dfi_A

Probab=91.13  E-value=0.13  Score=45.32  Aligned_cols=20  Identities=30%  Similarity=0.742  Sum_probs=18.9

Q ss_pred             eEEEcccCCCCCeeEEEEEc
Q psy9228          22 VLRITNARLQDSGKYKCEIQ   41 (834)
Q Consensus        22 ~l~~~~~~~~d~g~y~c~~~   41 (834)
                      .|+|.+|+.+|+|+|.|...
T Consensus        94 sL~I~~v~~~D~G~Y~C~v~  113 (128)
T 3r0n_A           94 TLALHGLTVEDEGNYTCEFA  113 (128)
T ss_dssp             CEEECSCCGGGCEEEEEEEE
T ss_pred             EEEEccCCchhCeEEEEEEE
Confidence            89999999999999999874

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=91.12  E-value=0.12  Score=51.76  Aligned_cols=25  Identities=16%  Similarity=0.246  Sum_probs=22.0

Q ss_pred             CCeEEEcccCCCCCeeEEEEEcCCC
Q psy9228          20 GNVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus        20 ~~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      ...|+|.+|+.+|+|.|.|.+.+..
T Consensus       209 ~~~L~I~~v~~~DsG~Y~C~a~n~~  233 (256)
T 3tf7_C          209 DFFLTLESASPSQTSLYFCASSDAP  233 (256)
T ss_dssp             BCEEEESSCCGGGCEEEEEEEEEET
T ss_pred             eEEEEECCCCHHHCEEEEEEecCCC
Confidence            3489999999999999999997654

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=91.12  E-value=0.15  Score=58.19  Aligned_cols=43  Identities=21%  Similarity=0.379  Sum_probs=32.6

Q ss_pred             cEEEEecCC-C-CCccc------c--C-C---CeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           3 YIKWSRADG-L-PLQRY------A--E-G---NVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         3 ~~~w~~~~~-~-~~~~~------~--~-~---~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .|+|.|.+. | +....      .  . +   ..|.|.+|+.+|+|.|.|.+.|..|
T Consensus       477 ~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G  533 (585)
T 2ocw_A          477 WCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHF  533 (585)
T ss_pred             EEEEeecCceeeeccCCCCCcceEEecCcccEEEEEECCCCcccCeEEEEEeEeCCC
Confidence            689999776 4 32211      1  1 1   4899999999999999999998765

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=91.11  E-value=0.15  Score=49.19  Aligned_cols=22  Identities=18%  Similarity=0.369  Sum_probs=20.7

Q ss_pred             eEEEcccCCCCCeeEEEEEcCC
Q psy9228          22 VLRITNARLQDSGKYKCEIQGH   43 (834)
Q Consensus        22 ~l~~~~~~~~d~g~y~c~~~~~   43 (834)
                      .|+|.+|+.+|+|.|.|.+.+.
T Consensus        79 ~L~I~~v~~~D~G~Y~C~~~~~  100 (210)
T 3d9a_H           79 YLDLNSVTTEDTATYYCANWDG  100 (210)
T ss_dssp             EEEECSCCGGGCEEEEEEETTS
T ss_pred             EEEECCCCcccCEEEEEEEecC
Confidence            8999999999999999999765

>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 1.50A {Mus musculus}

Probab=91.05  E-value=0.24  Score=42.60  Aligned_cols=25  Identities=28%  Similarity=0.442  Sum_probs=21.6

Q ss_pred             CCeEEEcccCCCCCeeEEEEEcCCC
Q psy9228          20 GNVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus        20 ~~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      +..|+|.+|+.+|+|+|.|......
T Consensus        73 ~~sL~I~~v~~~DsG~Y~C~v~~~~   97 (115)
T 2or7_A           73 NVSLTIENTVVGDGGPYCCVVEIPG   97 (115)
T ss_dssp             BCCEEESSCCGGGCEEEEEEECCTT
T ss_pred             eEEEEEccCCHHHCEEEEEEEECCC
Confidence            3589999999999999999997543

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=90.94  E-value=0.043  Score=65.18  Aligned_cols=44  Identities=23%  Similarity=0.333  Sum_probs=0.0

Q ss_pred             CcEEEEecCC-CCCcccc----CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA----EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~----~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.+. |+...+.    .++.|.|.+|+.+|+|.|.|.+.|..|
T Consensus       696 p~v~W~k~g~~l~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G  744 (772)
T 3v2a_R          696 PQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLG  744 (772)
T ss_dssp             -------------------------------------------------
T ss_pred             CeEEEEECCeECcCCCCeEEcCCCcEEEECcCCHHHCEEEEEEEEeCCc
Confidence            4799999776 7765443    368999999999999999999988765

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=90.89  E-value=0.16  Score=50.13  Aligned_cols=24  Identities=25%  Similarity=0.447  Sum_probs=21.6

Q ss_pred             eEEEcccCCCCCeeEEEEEcCCCC
Q psy9228          22 VLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus        22 ~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .|+|.+|+.+|+|.|.|.+.+..+
T Consensus        76 ~L~I~~v~~~D~G~Y~C~~~n~~~   99 (240)
T 1moe_A           76 TLIIDPVEADDVATYYCQQTNEDP   99 (240)
T ss_dssp             EEEESSCCGGGCEEEEEEECSSSS
T ss_pred             EEEEcCCChhhCEEEEEEEccCCc
Confidence            799999999999999999977643

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=90.88  E-value=0.18  Score=56.63  Aligned_cols=38  Identities=21%  Similarity=0.362  Sum_probs=32.5

Q ss_pred             cEEEEecCC-CCCccccCCCeEEEcccCCCCCeeEEEEEcC
Q psy9228           3 YIKWSRADG-LPLQRYAEGNVLRITNARLQDSGKYKCEIQG   42 (834)
Q Consensus         3 ~~~w~~~~~-~~~~~~~~~~~l~~~~~~~~d~g~y~c~~~~   42 (834)
                      +|+|.|.+. |.  .......|+|.+++.+|+|.|.|.+.+
T Consensus        63 ~v~W~~~~~~~~--~~~~~~~L~I~~~~~~D~G~Y~C~a~n  101 (524)
T 2ec8_A           63 FVKWTFEILDET--NENKQNEWITEKAEATNTGKYTCTNKH  101 (524)
T ss_dssp             EEEEEEESSSCC--EEECSSEEEESSCCSTTCEEEEEEETT
T ss_pred             eEEEcCCCcccc--ccCccceEEEcccchhhCEEEEEeecC
Confidence            689999777 73  334678999999999999999999977

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=90.86  E-value=0.1  Score=52.21  Aligned_cols=23  Identities=30%  Similarity=0.433  Sum_probs=21.0

Q ss_pred             eEEEcccCCCCCeeEEEEEcCCC
Q psy9228          22 VLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus        22 ~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      .|+|.+|+.+|+|.|.|.+.+..
T Consensus       110 ~L~I~~v~~~D~G~Y~C~~~~~~  132 (252)
T 3bkj_L          110 TLRISRVEAEDLGVYYCFQASLV  132 (252)
T ss_dssp             EEEESSCCGGGCEEEEEEECSBS
T ss_pred             EEEECCCCcccCEEEEEEEEcCC
Confidence            89999999999999999997654

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=90.84  E-value=0.096  Score=50.63  Aligned_cols=22  Identities=27%  Similarity=0.403  Sum_probs=20.4

Q ss_pred             CeEEEcccCCCCCeeEEEEEcC
Q psy9228          21 NVLRITNARLQDSGKYKCEIQG   42 (834)
Q Consensus        21 ~~l~~~~~~~~d~g~y~c~~~~   42 (834)
                      ..|+|.+|+.+|+|.|.|.+.+
T Consensus        69 ~~L~I~~v~~~D~G~Y~C~~~n   90 (212)
T 1nfd_E           69 ATLTISGAQPEDEAAYYCLSSY   90 (212)
T ss_dssp             EEEEETTCCGGGCSEEEEEEEE
T ss_pred             EEEEECcCCcccCEEEEEEEEc
Confidence            3899999999999999999975

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=90.82  E-value=0.14  Score=50.24  Aligned_cols=25  Identities=24%  Similarity=0.399  Sum_probs=21.7

Q ss_pred             CeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228          21 NVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus        21 ~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ..|+|.+|+.+|+|.|.|.+.+..+
T Consensus        91 ~~L~I~~v~~~D~G~Y~C~~~~~~~  115 (234)
T 2j6e_L           91 ASLAISGLRSEDEADYYCATWDDSL  115 (234)
T ss_dssp             EEEEEESCCSTTCSEEEEEEEETTT
T ss_pred             EEEEECCCCHHHCEEEEEEEEcCCc
Confidence            3899999999999999999975543

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A

Probab=90.80  E-value=0.15  Score=53.29  Aligned_cols=39  Identities=26%  Similarity=0.489  Sum_probs=30.8

Q ss_pred             CcEEEEecCC-CCCcc--c-cCCCeEEEcccCCCCCeeEEEEE
Q psy9228           2 AYIKWSRADG-LPLQR--Y-AEGNVLRITNARLQDSGKYKCEI   40 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~--~-~~~~~l~~~~~~~~d~g~y~c~~   40 (834)
                      ..|.|.|.++ ++...  . ..++.|.|.+|+.+|+|.|.|..
T Consensus        37 ~~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~   79 (325)
T 1n26_A           37 ATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYR   79 (325)
T ss_dssp             SEEEEEEECSSSSCCCEEEEEESSEEEECSCCGGGCEEEEEES
T ss_pred             ceEEEEECCccCCccccccccccceEEecccchhhCeEeEEEe
Confidence            4799999777 64322  1 24789999999999999999993

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=90.65  E-value=0.19  Score=50.64  Aligned_cols=24  Identities=25%  Similarity=0.383  Sum_probs=21.4

Q ss_pred             CCeEEEcccCCCCCeeEEEEEcCC
Q psy9228          20 GNVLRITNARLQDSGKYKCEIQGH   43 (834)
Q Consensus        20 ~~~l~~~~~~~~d~g~y~c~~~~~   43 (834)
                      +..|+|.+|+.+|+|.|.|.+.+.
T Consensus        99 ~~sL~I~~v~~~D~G~Y~C~~~~~  122 (268)
T 3pl6_D           99 VSTLKIQRTERGDSAVYLCATSAL  122 (268)
T ss_dssp             SEEEEECSCCGGGCEEEEEEEESS
T ss_pred             EEEEEECCCCcccCEEEEEEEecC
Confidence            457999999999999999999753

>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4 protein; AB-ignar, AB-12Y-2, glycoprotein, membran protease inhibitor; 2.05A {Orectolobus maculatus} PDB: 2z8w_C 2z8v_C 1ves_A 1ver_A

Probab=90.57  E-value=0.14  Score=45.18  Aligned_cols=25  Identities=40%  Similarity=0.582  Sum_probs=21.6

Q ss_pred             CCeEEEcccCCCCCeeEEEEEcCCC
Q psy9228          20 GNVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus        20 ~~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      ...|+|.+++.+|+|+|.|.+.+..
T Consensus        65 ~~sL~I~~v~~~DsG~Y~C~~~~~~   89 (126)
T 3moq_A           65 SFSLRISDLRVEDSGTYKCQAFYVF   89 (126)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEEEEE
T ss_pred             EEEEEECcCChHhCEEEEEEEEEcC
Confidence            3479999999999999999997553

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=90.52  E-value=0.19  Score=51.68  Aligned_cols=44  Identities=11%  Similarity=0.149  Sum_probs=32.6

Q ss_pred             CcEEEEecCC-CCCcccc--C----CC--eEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA--E----GN--VLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~--~----~~--~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      +.|+|.|.+. |....+.  .    ++  .|.|.+++.+|+|.|.|.+.++..
T Consensus       138 ~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~  190 (312)
T 2y23_A          138 AKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKA  190 (312)
T ss_dssp             CEEEEEETTEEECSSSSCEEEEETTTTEEEEEESCCCGGGCEEEEEEEESSSC
T ss_pred             CEEEEEECCEECeeCCcEEEEEccCCCEEEEEEccCCcccCEeEEEEEEeCCc
Confidence            4799999666 6654322  1    22  299999999999999999975543

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=90.50  E-value=0.092  Score=50.78  Aligned_cols=24  Identities=29%  Similarity=0.529  Sum_probs=21.5

Q ss_pred             CeEEEcccCCCCCeeEEEEEcCCC
Q psy9228          21 NVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus        21 ~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      ..|+|.+|+.+|+|.|.|.+.+..
T Consensus        73 ~~L~I~~v~~~D~G~Y~C~~~~~~   96 (212)
T 1q0x_L           73 AALTITGAQTEDEAIYFCALWSNN   96 (212)
T ss_dssp             EEEEESSCCGGGCEEEEEEEECSS
T ss_pred             EEEEECCCCccCCEEEEEEEecCc
Confidence            389999999999999999997654

>1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain; antibody-peptide complex, immunoglobulin fold, type II' beta turn., immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 PDB: 1i8i_A

Probab=90.48  E-value=0.14  Score=43.54  Aligned_cols=23  Identities=30%  Similarity=0.400  Sum_probs=20.9

Q ss_pred             eEEEcccCCCCCeeEEEEEcCCC
Q psy9228          22 VLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus        22 ~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      .|+|.+|+.+|+|.|.|.+.+..
T Consensus        72 ~L~I~~v~~~DsG~Y~C~~~~~~   94 (107)
T 1i8k_A           72 VFTIENTLSEDVGDYYCLQSFNV   94 (107)
T ss_dssp             EEEESSCCGGGCEEEEEEECSSS
T ss_pred             EEEECCCCHHHCEEEEEEEeeCC
Confidence            79999999999999999997654

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=90.46  E-value=0.11  Score=51.78  Aligned_cols=23  Identities=22%  Similarity=0.418  Sum_probs=20.9

Q ss_pred             CeEEEcccCCCCCeeEEEEEcCC
Q psy9228          21 NVLRITNARLQDSGKYKCEIQGH   43 (834)
Q Consensus        21 ~~l~~~~~~~~d~g~y~c~~~~~   43 (834)
                      ..|+|.+|+.+|+|.|.|.+.+.
T Consensus        81 ~~L~I~~v~~~D~G~Y~C~~~n~  103 (247)
T 2ghw_B           81 LYLQMNSLRAEDTAVYYCARDRS  103 (247)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEET
T ss_pred             EEEEECcCCHHHCEEEEEeeecc
Confidence            37999999999999999999765

>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1

Probab=90.45  E-value=0.12  Score=44.97  Aligned_cols=26  Identities=19%  Similarity=0.538  Sum_probs=21.2

Q ss_pred             CCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228          20 GNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus        20 ~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      +..|+|.+|+.+|+|.|.|...+..+
T Consensus        80 ~~sL~I~~v~~~D~G~Y~C~v~~~~~  105 (124)
T 1neu_A           80 DGSIVIHNLDYSDNGTFTCDVKNPPD  105 (124)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEC---
T ss_pred             eEEEEEccCChhhCEEEEEEEEcCCC
Confidence            36899999999999999999976544

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=90.41  E-value=0.078  Score=58.27  Aligned_cols=43  Identities=9%  Similarity=0.095  Sum_probs=34.4

Q ss_pred             cEEEEecCC-CCCcccc---CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           3 YIKWSRADG-LPLQRYA---EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         3 ~~~w~~~~~-~~~~~~~---~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      +|+|.|.+. |......   .++.|+|.+++.+|+|.|.|.+.|..+
T Consensus       120 ~v~W~k~g~~l~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g  166 (450)
T 1z7z_I          120 TVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLR  166 (450)
T ss_dssp             EEEEEETTEEEEEEECCTTTEEEEEEEECCSSCSSCEEEEEEEEECG
T ss_pred             EEEEeeCCEEeecccccccccceEEEEEeeccccCceEEEEEEcccC
Confidence            789999665 7655433   245899999999999999999987654

>2sli_A Intramolecular trans-sialidase; hydrolase, neuraminidase; HET: SKD; 1.80A {Macrobdella decora} SCOP: b.29.1.9 b.68.1.1 PDB: 1sll_A 1sli_A* 3sli_A* 4sli_A*

Probab=90.40  E-value=4.8  Score=46.29  Aligned_cols=136  Identities=21%  Similarity=0.217  Sum_probs=83.2

Q ss_pred             eeEEEEEEEeeCCCCee--EEEeccCCccccCCCCCeEEEEEEC-cEEEEEEec--cc--EEEEeeeeec---CC--CeE
Q psy9228         405 LHFSIELSFKPTDYNGL--IMYTGDSNMKSYKGKGDFVSFGLED-GYPVFRFDV--GL--VVLRSKVTLV---PH--EWV  472 (834)
Q Consensus       405 ~~~~i~~~frt~~~~Gl--Ll~~~~~~~~~~~~~~d~~~l~L~~-G~l~~~~~~--G~--~~i~s~~~~~---dg--~wH  472 (834)
                      ..++|.|+||+...+..  ||-..+...   .....+|.+.|.+ |++.+.+.-  |.  ..+..+..+.   .|  +|+
T Consensus        35 ~~~Ti~~~~~~~~~~~~~~lfs~s~~~~---~~~~~~~~~~i~~~g~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (679)
T 2sli_A           35 TQGTIILSYKSTSENGIQSLFSVGNSTA---GNQDRHFHIYITNSGGIGIELRNTDGVFNYTLDRPASVRALYKGERVFN  111 (679)
T ss_dssp             SSEEEEEEEEECCCCSEEEEEEEECCST---TCTTEEEEEEEETTSCEEEEEEECTTTCEEEEEESSCCCSEETTEECCE
T ss_pred             cCeEEEEEEEcCCCCCceEEEEeecCCc---cccCcceEEEEcCCCeEEEEEecCCCCeeeecccccccccccCCCceeE
Confidence            46899999999875533  333322110   0134799999984 677666433  32  2222333333   35  699


Q ss_pred             EEEEEEE--CCeEEEEECCeeeeeeecCC-CccccccCCCceeeccccCCCcccCcCcccccCceeEEeeeEEcCeeeee
Q psy9228         473 VVTIIKD--FKEGKLSVGGEPLIVGSTPG-EKLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDL  549 (834)
Q Consensus       473 ~V~v~~~--~~~~~l~VD~~~~~~~~~~g-~~~~~l~~~~~l~iGG~~~~~~~~~~~~~~~~gF~GCi~~v~ing~~~~~  549 (834)
                      +|.+..+  ...++|+|||.......... .....+..-..+.||+.....      .. .-+|.|-|.++.|-...+..
T Consensus       112 ~va~~~~~~~~~~~lyvnG~~v~~~~~~~~~f~~~~~~~~~~~iG~~~~~g------~~-~~~f~G~i~~~~iy~~~Ls~  184 (679)
T 2sli_A          112 TVALKADAANKQCRLFANGELLATLDKDAFKFISDITGVDNVTLGGTKRQG------KI-AYPFGGTIGDIKVYSNALSD  184 (679)
T ss_dssp             EEEEEEETTTTEEEEEETTEEEEEEECSSCCCGGGSTTCCEEEESSEEETT------EE-ESCCCEEEEEEEEESSCCCH
T ss_pred             EEEEEEECCCCeEEEEECCEEeEeecccccccccccCCCceEEEeeeecCC------ce-eccccceEeEEEEeCCCCCH
Confidence            9999998  57999999998877654432 101223333578899853311      11 12599999999997766554


Q ss_pred             c
Q psy9228         550 I  550 (834)
Q Consensus       550 ~  550 (834)
                      .
T Consensus       185 ~  185 (679)
T 2sli_A          185 E  185 (679)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=90.37  E-value=0.11  Score=49.90  Aligned_cols=44  Identities=14%  Similarity=0.223  Sum_probs=32.3

Q ss_pred             CcEEEEecCC-CCCcccc-CC---CeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA-EG---NVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~-~~---~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|.|.|.++ +...... .+   .+|.|.+|+.+|+|.|.|.+.|..+
T Consensus       133 p~v~W~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~d~G~Y~C~a~N~~g  181 (202)
T 3bp6_B          133 AEVSWQNVSVPANTSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHM  181 (202)
T ss_dssp             CEEEETTCCSCCEEEEEECTTSCEEEEEEEEECCCTTCCEEEEEEETTT
T ss_pred             ceEEEEeCCCCccCceeeCCCCCEEEEEEEEEEcCCCCEEEEEEEcCCc
Confidence            4799999666 5332222 22   3567789999999999999988765

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=90.31  E-value=0.13  Score=56.42  Aligned_cols=44  Identities=16%  Similarity=0.302  Sum_probs=33.8

Q ss_pred             CcEEEEecCC-CCCcccc-----C------CCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA-----E------GNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~-----~------~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.++ ++.....     .      .+.|+|.+|+.+|+|.|.|.+.|..+
T Consensus       274 ~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~  329 (444)
T 1igt_B          274 VQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDL  329 (444)
T ss_dssp             CEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTC
T ss_pred             eEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcEEEEEEcCCC
Confidence            4899999776 6543211     1      23799999999999999999987655

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=90.25  E-value=0.14  Score=51.40  Aligned_cols=24  Identities=21%  Similarity=0.423  Sum_probs=21.7

Q ss_pred             CeEEEcccCCCCCeeEEEEEcCCC
Q psy9228          21 NVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus        21 ~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      ..|+|.+|+.+|+|.|.|.+.+..
T Consensus        78 ~~L~I~~v~~~DsG~Y~C~a~n~~  101 (257)
T 1f3r_B           78 VFLKMNSLQTDDTGTYYCTRDLYG  101 (257)
T ss_dssp             EEEEEESCCTTCCEEEEEEEESSS
T ss_pred             EEEEECCCCcccCEEEEEEEcccc
Confidence            389999999999999999998764

>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*

Probab=90.20  E-value=0.15  Score=61.16  Aligned_cols=49  Identities=29%  Similarity=0.480  Sum_probs=40.1

Q ss_pred             CCCCCCCCCCCCeecccCCCCCceeeecCCCCCCCCCccCccCCCCCCccCCCce
Q psy9228         569 PVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGM  623 (834)
Q Consensus       569 ~~C~~~pC~ngg~C~~~~~~~~~~~C~C~~G~~G~~Ce~~~~~C~~~~pC~ngg~  623 (834)
                      +.|.-+||+|||++.....   ...|.|++||.|..||...  |... |+...|.
T Consensus       498 ~~c~C~PC~ngg~~~l~g~---~C~C~C~~g~~G~~Ce~~~--~~~~-~~~v~G~  546 (913)
T 3t5o_A          498 DPCQCAPCPNNGRPTLSGT---ECLCVCQSGTYGENCEKQS--PDYK-SNAVDGQ  546 (913)
T ss_dssp             CGGGSCCBTTTBEEEEETT---EEEEECCTTBCSTTSCCBC--SSCC-CCCBCCC
T ss_pred             ccccCCCCCCCCEeecCCC---ceEEEccCCccccCccCcc--cccc-ccccCCC
Confidence            4566679999999998776   8999999999999999986  6655 6655554

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=90.15  E-value=0.15  Score=53.24  Aligned_cols=43  Identities=19%  Similarity=0.387  Sum_probs=31.8

Q ss_pred             CcEEEEecCC-CCC-ccc-----cC-----CCeEEEcccCCCCCeeEEEEEcCCC
Q psy9228           2 AYIKWSRADG-LPL-QRY-----AE-----GNVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus         2 ~~~~w~~~~~-~~~-~~~-----~~-----~~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      .+|+|.|.+| ++. ...     ..     .+.|+|.+++.+|+|.|.|.+.+..
T Consensus       147 ~~i~W~k~~g~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~  201 (323)
T 2wqr_A          147 VQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPH  201 (323)
T ss_dssp             CEEEEEETTCCCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTT
T ss_pred             eEEEEEECCCcccccccCCCccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCC
Confidence            3899999777 432 211     11     2379999999999999999997654

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=90.14  E-value=0.13  Score=51.10  Aligned_cols=23  Identities=30%  Similarity=0.478  Sum_probs=21.1

Q ss_pred             eEEEcccCCCCCeeEEEEEcCCC
Q psy9228          22 VLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus        22 ~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      .|+|.+|+.+|+|.|.|.+.+..
T Consensus        77 ~L~I~~v~~~D~G~Y~C~~~n~~   99 (247)
T 1svz_A           77 TLKISRVEAEDLGIYYCFQGSHF   99 (247)
T ss_dssp             EEEESSCCGGGCEEEEEEECSSS
T ss_pred             EEEECCCCHHHCEEEEEEEccCC
Confidence            79999999999999999997654

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=90.13  E-value=0.13  Score=51.46  Aligned_cols=42  Identities=17%  Similarity=0.311  Sum_probs=32.7

Q ss_pred             CcEEEEecCC-CCCccccCCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYAEGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .+|.|.|.+. ++..  ..+..|.|.+++.+|+|.|.|.+.+..+
T Consensus       113 ~~v~W~~~g~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~~~n~~~  155 (262)
T 3rjd_A          113 YNVLYYRNGKAFKFF--HWNSNLTILKTNISHNGTYHCSGMGKHR  155 (262)
T ss_dssp             EEEEEEETTEEEEEE--EECCCEEESSCCGGGCEEEEEEEESSSE
T ss_pred             ceEEEEECCcccccc--CCCCeEEEEECChhhCEEEEEEEeCCCC
Confidence            3799999554 5432  2367899999999999999999976653

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=90.12  E-value=0.13  Score=50.99  Aligned_cols=24  Identities=25%  Similarity=0.429  Sum_probs=21.5

Q ss_pred             CeEEEcccCCCCCeeEEEEEcCCC
Q psy9228          21 NVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus        21 ~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      ..|+|.+|+.+|+|.|.|.+.+..
T Consensus        71 ~~L~I~~v~~~D~G~Y~C~~~n~~   94 (242)
T 2znx_A           71 FTLSINSVETEDFGMYFCQQSNSX   94 (242)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSSS
T ss_pred             EEEEECCCChHHCEEEEEeEecCC
Confidence            379999999999999999997654

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=90.10  E-value=0.088  Score=52.03  Aligned_cols=43  Identities=9%  Similarity=0.329  Sum_probs=30.9

Q ss_pred             CcEEEEecCC-C-CCcccc----CCC------eEEEcccCCCCCeeEEEEEcCCC
Q psy9228           2 AYIKWSRADG-L-PLQRYA----EGN------VLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus         2 ~~~~w~~~~~-~-~~~~~~----~~~------~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      ++|+|.|.+. + ......    .++      .|+|.+++.+|+|.|.|.+.+..
T Consensus        46 ~~v~W~~~g~~~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~  100 (231)
T 2w59_A           46 LSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLSGERFTCTVQHEE  100 (231)
T ss_dssp             CEEEEECSSSSCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTT
T ss_pred             eEEEEEcCCeeccccccccceECCCCcEEEEEEEEecchhccCCCEEEEEEEcCC
Confidence            4899998554 5 221111    222      69999999999999999997654

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=90.09  E-value=0.14  Score=51.12  Aligned_cols=43  Identities=21%  Similarity=0.437  Sum_probs=0.0

Q ss_pred             CCcEEEEecC--------------------C-CCCccccCCCeEEEcccCCCCCeeEEEEEcCC
Q psy9228           1 NAYIKWSRAD--------------------G-LPLQRYAEGNVLRITNARLQDSGKYKCEIQGH   43 (834)
Q Consensus         1 ~~~~~w~~~~--------------------~-~~~~~~~~~~~l~~~~~~~~d~g~y~c~~~~~   43 (834)
                      ...|.|.|.+                    + +..........|+|.+|+.+|+|.|.|.+.+.
T Consensus        33 ~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~   96 (250)
T 3esu_F           33 RNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQEDIGTYFCQQGNT   96 (250)
T ss_dssp             TTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             CceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChhhCEEEEEEEeeC

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	834
d1pz7a_	195	b.29.1.4 (A:) Agrin {Chicken (Gallus gallus) [TaxI	1e-27
d1pz7a_	195	b.29.1.4 (A:) Agrin {Chicken (Gallus gallus) [TaxI	4e-20
d1pz7a_	195	b.29.1.4 (A:) Agrin {Chicken (Gallus gallus) [TaxI	3e-09
d1pz7a_	195	b.29.1.4 (A:) Agrin {Chicken (Gallus gallus) [TaxI	2e-05
d1dyka2	185	b.29.1.4 (A:2933-3117) Laminin alpha2 chain {Mouse	7e-23
d1dyka2	185	b.29.1.4 (A:2933-3117) Laminin alpha2 chain {Mouse	1e-21
d1dyka2	185	b.29.1.4 (A:2933-3117) Laminin alpha2 chain {Mouse	9e-06
d1dyka1	189	b.29.1.4 (A:2744-2932) Laminin alpha2 chain {Mouse	9e-22
d1dyka1	189	b.29.1.4 (A:2744-2932) Laminin alpha2 chain {Mouse	1e-18
d1dyka1	189	b.29.1.4 (A:2744-2932) Laminin alpha2 chain {Mouse	1e-05
d1dyka1	189	b.29.1.4 (A:2744-2932) Laminin alpha2 chain {Mouse	2e-05
d1h30a1	191	b.29.1.4 (A:261-451) Growth-arrest-specific protei	9e-22
d1h30a1	191	b.29.1.4 (A:261-451) Growth-arrest-specific protei	2e-21
d1h30a1	191	b.29.1.4 (A:261-451) Growth-arrest-specific protei	2e-07
d1d2sa_	170	b.29.1.4 (A:) Sex hormone-binding globulin {Human	3e-21
d1d2sa_	170	b.29.1.4 (A:) Sex hormone-binding globulin {Human	8e-19
d1d2sa_	170	b.29.1.4 (A:) Sex hormone-binding globulin {Human	5e-05
d1d2sa_	170	b.29.1.4 (A:) Sex hormone-binding globulin {Human	1e-04
d2r1da1	177	b.29.1.4 (A:36-212) Ligand-binding domain of neure	1e-16
d2r1da1	177	b.29.1.4 (A:36-212) Ligand-binding domain of neure	1e-16
d1h30a2	218	b.29.1.4 (A:461-678) Growth-arrest-specific protei	1e-12
d1h30a2	218	b.29.1.4 (A:461-678) Growth-arrest-specific protei	3e-12
d1haea_	63	g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Hu	2e-09
d1haea_	63	g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Hu	2e-06
d1haea_	63	g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Hu	0.002
d1haea_	63	g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Hu	0.004
d3egfa_	53	g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse	5e-09
d3egfa_	53	g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse	2e-08
d3egfa_	53	g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse	2e-04
d3egfa_	53	g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse	4e-04
d1tpga1	41	g.3.11.1 (A:51-91) Plasminogen activator (tissue-t	8e-09
d1tpga1	41	g.3.11.1 (A:51-91) Plasminogen activator (tissue-t	2e-06
d2vj3a3	35	g.3.11.1 (A:492-526) Neurogenic locus notch homolo	2e-08
d2vj3a3	35	g.3.11.1 (A:492-526) Neurogenic locus notch homolo	3e-06
d2vj3a3	35	g.3.11.1 (A:492-526) Neurogenic locus notch homolo	8e-05
d2vj3a3	35	g.3.11.1 (A:492-526) Neurogenic locus notch homolo	0.001
d1g1ta2	39	g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human	3e-08
d1g1ta2	39	g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human	4e-05
d1g1ta2	39	g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human	1e-04
d1g1ta2	39	g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human	2e-04
d1cvua2	41	g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EG	3e-08
d1cvua2	41	g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EG	1e-04
d1g1sa2	40	g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human	3e-08
d1g1sa2	40	g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human	2e-05
d1g1sa2	40	g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human	1e-04
d1g1sa2	40	g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human	0.001
d2c4fl1	37	g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrof	3e-08
d2c4fl1	37	g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrof	3e-06
d2c4fl1	37	g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrof	1e-04
d2c4fl1	37	g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrof	0.003
d1nqlb_	48	g.3.11.1 (B:) Epidermal growth factor, EGF {Human	4e-08
d1nqlb_	48	g.3.11.1 (B:) Epidermal growth factor, EGF {Human	2e-07
d1nqlb_	48	g.3.11.1 (B:) Epidermal growth factor, EGF {Human	0.001
d1nqlb_	48	g.3.11.1 (B:) Epidermal growth factor, EGF {Human	0.001
d1xkba1	39	g.3.11.1 (A:48-86) Factor X, N-terminal module {Hu	4e-08
d1xkba1	39	g.3.11.1 (A:48-86) Factor X, N-terminal module {Hu	2e-06
d1xkba1	39	g.3.11.1 (A:48-86) Factor X, N-terminal module {Hu	9e-05
d1xkba1	39	g.3.11.1 (A:48-86) Factor X, N-terminal module {Hu	0.002
d2vj3a2	39	g.3.11.1 (A:453-491) Neurogenic locus notch homolo	4e-08
d2vj3a2	39	g.3.11.1 (A:453-491) Neurogenic locus notch homolo	2e-06
d2vj3a2	39	g.3.11.1 (A:453-491) Neurogenic locus notch homolo	9e-05
d2vj3a2	39	g.3.11.1 (A:453-491) Neurogenic locus notch homolo	0.003
d1edmb_	39	g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens	4e-08
d1edmb_	39	g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens	2e-06
d1edmb_	39	g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens	6e-05
d1edmb_	39	g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens	0.003
d1q4ga2	42	g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EG	7e-08
d1q4ga2	42	g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EG	9e-05
d1autl1	48	g.3.11.1 (L:49-96) Activated protein c (autoprothr	3e-07
d1autl1	48	g.3.11.1 (L:49-96) Activated protein c (autoprothr	8e-07
d1autl1	48	g.3.11.1 (L:49-96) Activated protein c (autoprothr	5e-04
d2vj3a1	42	g.3.11.1 (A:411-452) Neurogenic locus notch homolo	4e-07
d2vj3a1	42	g.3.11.1 (A:411-452) Neurogenic locus notch homolo	1e-06
d2vj3a1	42	g.3.11.1 (A:411-452) Neurogenic locus notch homolo	2e-05
d2vj3a1	42	g.3.11.1 (A:411-452) Neurogenic locus notch homolo	7e-05
d1ioxa_	50	g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens)	5e-06
d1ioxa_	50	g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens)	4e-05
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	1e-05
d1k36a_	46	g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo	2e-05
d1k36a_	46	g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo	2e-04
d1moxc_	49	g.3.11.1 (C:) Transforming growth factor alpha {Hu	2e-05
d1moxc_	49	g.3.11.1 (C:) Transforming growth factor alpha {Hu	4e-04
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	7e-05
d1l6za1	107	b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, C	9e-05
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	1e-04
d1kloa1	55	g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mu	1e-04
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	3e-04
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	5e-04
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	7e-04
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	8e-04
d1xdtr_	41	g.3.11.1 (R:) Heparin-binding epidermal growth fac	0.001
d1apqa_	53	g.3.11.1 (A:) Complement protease C1R {Human (Homo	0.001
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	0.002
d1gl4a2	40	g.3.11.5 (A:359-398) EGF-like domain of nidogen-1	0.004

>d1pz7a_ b.29.1.4 (A:) Agrin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 195

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Agrin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score =  108 bits (271), Expect = 1e-27
 Identities = 54/178 (30%), Positives = 82/178 (46%), Gaps = 9/178 (5%)

Query: 387 FTQKPLSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLED 446
            +   L Y A P+   A      ELS K     GLI+++G         + D+++  + D
Sbjct: 25  KSPDALDYPAEPSE-KALQSNHFELSIKTEATQGLILWSGKGL-----ERSDYIALAIVD 78

Query: 447 GYPVFRFDVG--LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQV 504
           G+    +D+G   VVLRS V +  + W  +   +  +EG L VG E  I GS+P      
Sbjct: 79  GFVQMMYDLGSKPVVLRSTVPINTNHWTHIKAYRVQREGSLQVGNEAPITGSSPL-GATQ 137

Query: 505 LNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANIMDC 562
           L+    L+LGG     V   L    + GF GCI  + V   EL L+  A+++  I+ C
Sbjct: 138 LDTDGALWLGGMERLSVAHKLPKAYSTGFIGCIRDVIVDRQELHLVEDALNNPTILHC 195

>d1pz7a_ b.29.1.4 (A:) Agrin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 195

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Agrin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 86.9 bits (214), Expect = 4e-20
 Identities = 39/195 (20%), Positives = 81/195 (41%), Gaps = 21/195 (10%)

Query: 651 GSEVHFLGEGYVELKKELI-------------EERRNEETIAFDFVTDDKNALLLWNGQP 697
              + F G  Y+E    +              E+            T+    L+LW+G+ 
Sbjct: 6   AEAIAFDGRTYMEYHNAVTKSPDALDYPAEPSEKALQSNHFELSIKTEATQGLILWSGKG 65

Query: 698 SYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLE 757
             ++    ++IA+A+V+G+++  YDLG   V +  S  P+N      +   R+ + GSL+
Sbjct: 66  LERS----DYIALAIVDGFVQMMYDLGSKPVVL-RSTVPINTNHWTHIKAYRVQREGSLQ 120

Query: 758 VDSVIVGKGESPGSQDVINTRGNIYLGGTPNMDLM--TGGRYVHPMSGLMMNIHIQNKHI 815
           V +     G SP     ++T G ++LGG   + +       Y     G + ++ +  + +
Sbjct: 121 VGNEAPITGSSPLGATQLDTDGALWLGGMERLSVAHKLPKAYSTGFIGCIRDVIVDRQEL 180

Query: 816 SNIGSSASSGLHVMP 830
            ++   A +   ++ 
Sbjct: 181 -HLVEDALNNPTILH 194

>d1pz7a_ b.29.1.4 (A:) Agrin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 195

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Agrin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 55.3 bits (132), Expect = 3e-09
 Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 1/82 (1%)

Query: 55  NVERMMFVDGIGPFSGESQGAFQGLDLSELVYIGAVPDFGEIHPSA-GFSNGFKGCVSRL 113
             E  + V    P +G S      LD    +++G +      H     +S GF GC+  +
Sbjct: 114 QREGSLQVGNEAPITGSSPLGATQLDTDGALWLGGMERLSVAHKLPKAYSTGFIGCIRDV 173

Query: 114 KYNKTEFELFKMAVERVGVDSC 135
             ++ E  L + A+    +  C
Sbjct: 174 IVDRQELHLVEDALNNPTILHC 195

>d1pz7a_ b.29.1.4 (A:) Agrin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 195

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Agrin
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 44.2 bits (103), Expect = 2e-05
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%)

Query: 226 SYLAYPTPKTMRKFKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKHMEFRFDTG 285
            Y A P+ K ++     L +       G+IL+SG+  +   D+I+LAI +  ++  +D G
Sbjct: 31  DYPAEPSEKALQSNHFELSIKTEA-TQGLILWSGKGLER-SDYIALAIVDGFVQMMYDLG 88

Query: 286 SAT 288
           S  
Sbjct: 89  SKP 91

>d1dyka2 b.29.1.4 (A:2933-3117) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]} Length = 185

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Laminin alpha2 chain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 94.5 bits (234), Expect = 7e-23
 Identities = 29/183 (15%), Positives = 54/183 (29%), Gaps = 16/183 (8%)

Query: 393 SYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFR 452
            +          L   +E  F+ T   G+++              D +   + D   +F 
Sbjct: 12  GFAKAVGGFKVGLDLLVEFEFRTTRPTGVLLGVSSQK-------MDGMGIEMIDEKLMFH 64

Query: 453 FDVG------LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLN 506
            D G      +        +   +W  VT  K     +L V G  +   S         +
Sbjct: 65  VDNGAGRFTAIYDAEIPGHMCNGQWHKVTAKKIKNRLELVVDGNQVDAQSPNSASTS-AD 123

Query: 507 LRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANIMDCSDLE 566
              P+++GG+        L+      F GCI ++ +       +      A  +      
Sbjct: 124 TNDPVFVGGFPGGLNQFGLT--TNIRFRGCIRSLKLTKGTGKPLEVNFAKALELRGVQPV 181

Query: 567 SSP 569
           S P
Sbjct: 182 SCP 184

>d1dyka2 b.29.1.4 (A:2933-3117) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]} Length = 185

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Laminin alpha2 chain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 91.1 bits (225), Expect = 1e-21
 Identities = 28/178 (15%), Positives = 61/178 (34%), Gaps = 11/178 (6%)

Query: 654 VHFLGEGYVELKKELIEERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVV 713
            +F G G+ +       +   +  + F+F T     +LL             + + + ++
Sbjct: 6   TYFDGTGFAKAVGGF--KVGLDLLVEFEFRTTRPTGVLLGVSSQ------KMDGMGIEMI 57

Query: 714 NGYLEYSYDLGDGVVTIKFSKKP---VNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPG 770
           +  L +  D G G  T  +  +    + +G  H V   +I     L VD   V       
Sbjct: 58  DEKLMFHVDNGAGRFTAIYDAEIPGHMCNGQWHKVTAKKIKNRLELVVDGNQVDAQSPNS 117

Query: 771 SQDVINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNIHIQNKHISNIGSSASSGLHV 828
           +    +T   +++GG P      G        G + ++ +       +  + +  L +
Sbjct: 118 ASTSADTNDPVFVGGFPGGLNQFGLTTNIRFRGCIRSLKLTKGTGKPLEVNFAKALEL 175

>d1dyka2 b.29.1.4 (A:2933-3117) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]} Length = 185

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Laminin alpha2 chain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.8 bits (105), Expect = 9e-06
 Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 7/84 (8%)

Query: 60  MFVDGIGPFSGESQGAFQGLDLSELVYIGAVPDFGEIHPSAGFSNGFKGCVSRLKYNKTE 119
           + VDG    +     A    D ++ V++G  P           +  F+GC+  LK  K  
Sbjct: 103 LVVDGNQVDAQSPNSASTSADTNDPVFVGGFPGGLN-QFGLTTNIRFRGCIRSLKLTKGT 161

Query: 120 FEL----FKMAVERVGV--DSCNT 137
            +     F  A+E  GV   SC T
Sbjct: 162 GKPLEVNFAKALELRGVQPVSCPT 185

>d1dyka1 b.29.1.4 (A:2744-2932) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]} Length = 189

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Laminin alpha2 chain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 91.4 bits (226), Expect = 9e-22
 Identities = 39/180 (21%), Positives = 71/180 (39%), Gaps = 13/180 (7%)

Query: 387 FTQKPLSYLALPTL-TDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLE 445
           F     S++A+    T      +IEL  +    +GL+ Y             DF +  L 
Sbjct: 19  FGLSRNSHIAIAFDDTKVKNRLTIELEVRTEAESGLLFYMAR------INHADFATVQLR 72

Query: 446 DGYPVFRFDVG--LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQ 503
           +G+P F +D+G           +   +W  + I++  +EG L V        S     + 
Sbjct: 73  NGFPYFSYDLGSGDTSTMIPTKINDGQWHKIKIVRVKQEGILYVDDASSQTISPKKADIL 132

Query: 504 VLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANIMDCS 563
             ++   LY+GG  I + T  +   VT    GC+  + +  + +DL +    S ++  C 
Sbjct: 133 --DVVGILYVGGLPINYTTRRIGP-VTYSLDGCVRNLHMEQAPVDL-DQPTSSFHVGTCF 188

>d1dyka1 b.29.1.4 (A:2744-2932) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]} Length = 189

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Laminin alpha2 chain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.2 bits (202), Expect = 1e-18
 Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 10/159 (6%)

Query: 673 RNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKF 732
           +N  TI  +  T+ ++ LL +  + +       +F  V + NG+  +SYDLG G  +   
Sbjct: 37  KNRLTIELEVRTEAESGLLFYMARIN-----HADFATVQLRNGFPYFSYDLGSGDTST-M 90

Query: 733 SKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTP-NMDL 791
               +NDG  H + + R+ + G L VD     +  SP   D+++  G +Y+GG P N   
Sbjct: 91  IPTKINDGQWHKIKIVRVKQEGILYVDDASS-QTISPKKADILDVVGILYVGGLPINYTT 149

Query: 792 MTGGRYVHPMSGLMMNIHIQNKHISNIGSSASSGLHVMP 830
              G   + + G + N+H++   +       +S  HV  
Sbjct: 150 RRIGPVTYSLDGCVRNLHMEQAPVDL--DQPTSSFHVGT 186

>d1dyka1 b.29.1.4 (A:2744-2932) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]} Length = 189

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Laminin alpha2 chain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.4 bits (104), Expect = 1e-05
 Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 2/81 (2%)

Query: 55  NVERMMFVDGIGPFSGESQGAFQGLDLSELVYIGAVPDFGEIHPSAGFSNGFKGCVSRLK 114
             E +++VD        S      LD+  ++Y+G +P           +    GCV  L 
Sbjct: 109 KQEGILYVDDA-SSQTISPKKADILDVVGILYVGGLPINYTTRRIGPVTYSLDGCVRNLH 167

Query: 115 YNKTEFELFKMAVERVGVDSC 135
             +   +L         V +C
Sbjct: 168 MEQAPVDL-DQPTSSFHVGTC 187

>d1dyka1 b.29.1.4 (A:2744-2932) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]} Length = 189

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Laminin alpha2 chain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.1 bits (103), Expect = 2e-05
 Identities = 14/80 (17%), Positives = 27/80 (33%), Gaps = 5/80 (6%)

Query: 219 QPAFKHGSYLAYPTPKTM--RKFKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREK 276
           Q      S++A     T    +  + L +       G++ Y  + +    DF ++ +R  
Sbjct: 18  QFGLSRNSHIAIAFDDTKVKNRLTIELEVRTEA-ESGLLFYMARINHA--DFATVQLRNG 74

Query: 277 HMEFRFDTGSATPLYSNDAP 296
              F +D GS          
Sbjct: 75  FPYFSYDLGSGDTSTMIPTK 94

>d1h30a1 b.29.1.4 (A:261-451) Growth-arrest-specific protein Gas6 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Growth-arrest-specific protein Gas6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.4 bits (226), Expect = 9e-22
 Identities = 41/196 (20%), Positives = 74/196 (37%), Gaps = 14/196 (7%)

Query: 618 CKNGGMCKVTPDSYECLCSLGYAPPNCAKRV-SIGSEVHFLGEGYVELKKELIEERRNEE 676
            + G   K++ D   C   L   P + AK V S+     F G   + L+ + ++  R   
Sbjct: 4   GRGG--LKLSQDMDTCEDILPCVPFSVAKSVKSLYLGRMFSGTPVIRLRFKRLQPTR--L 59

Query: 677 TIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKKP 736
              FDF T D   +LL+ G           +I +A+  G LE           +  S   
Sbjct: 60  VAEFDFRTFDPEGILLFAG-----GHQDSTWIVLALRAGRLELQLRYNGVGR-VTSSGPV 113

Query: 737 VNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGS---QDVINTRGNIYLGGTPNMDLMT 793
           +N G+  +++V  + +   ++V+   V K    G     +      N+ +GG P  +   
Sbjct: 114 INHGMWQTISVEELARNLVIKVNRDAVMKIAVAGDLFQPERGLYHLNLTVGGIPFHEKDL 173

Query: 794 GGRYVHPMSGLMMNIH 809
                  + G M + +
Sbjct: 174 VQPINPRLDGCMRSWN 189

>d1h30a1 b.29.1.4 (A:261-451) Growth-arrest-specific protein Gas6 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Growth-arrest-specific protein Gas6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.3 bits (223), Expect = 2e-21
 Identities = 23/161 (14%), Positives = 53/161 (32%), Gaps = 14/161 (8%)

Query: 387 FTQKPLSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLED 446
           F+  P+  L    L         E  F+  D  G++++ G            ++   L  
Sbjct: 41  FSGTPVIRLRFKRLQP--TRLVAEFDFRTFDPEGILLFAGGH------QDSTWIVLALRA 92

Query: 447 GYPVFRFDV--GLVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGE--KL 502
           G    +        V  S   +    W  +++ +  +   + V  + ++  +  G+  + 
Sbjct: 93  GRLELQLRYNGVGRVTSSGPVINHGMWQTISVEELARNLVIKVNRDAVMKIAVAGDLFQP 152

Query: 503 QVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVL 543
           +       L +GG   +     L   +     GC+ + + L
Sbjct: 153 ERGLYHLNLTVGGIPFHE--KDLVQPINPRLDGCMRSWNWL 191

>d1h30a1 b.29.1.4 (A:261-451) Growth-arrest-specific protein Gas6 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Growth-arrest-specific protein Gas6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (119), Expect = 2e-07
 Identities = 20/134 (14%), Positives = 40/134 (29%), Gaps = 22/134 (16%)

Query: 163 CICPPGFSGDRCSVLGEPCYPGACGDGSCQDVDGAMKCLCPIGTAGKRCEQKIKILQPAF 222
           C    G    + S              +C+D+       C   +  K  +        + 
Sbjct: 2   CDGRGGL---KLSQDM----------DTCEDI-----LPCVPFSVAKSVKSLYLGRMFSG 43

Query: 223 KHGSYLAYPTPKTMRKFKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKHMEFRF 282
                L +   +   +          D  +GI+L++G   D    +I LA+R   +E + 
Sbjct: 44  TPVIRLRFKRLQ-PTRLVAEFDFRTFD-PEGILLFAGGHQDS--TWIVLALRAGRLELQL 99

Query: 283 DTGSATPLYSNDAP 296
                  + S+   
Sbjct: 100 RYNGVGRVTSSGPV 113

>d1d2sa_ b.29.1.4 (A:) Sex hormone-binding globulin {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Sex hormone-binding globulin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.4 bits (221), Expect = 3e-21
 Identities = 30/169 (17%), Positives = 55/169 (32%), Gaps = 17/169 (10%)

Query: 387 FTQKPLSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLED 446
             Q+P++ +            S     +  D  G+I Y   +       K D+   GL D
Sbjct: 10  PGQEPIAVMTFDLTK--ITKTSSSFEVRTWDPEGVIFYGDTNP------KDDWFMLGLRD 61

Query: 447 GYPVFRFDVG--LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQV 504
           G P  +       + + +   L    W  V +  +     L V GE ++           
Sbjct: 62  GRPEIQLHNHWAQLTVGAGPRLDDGRWHQVEVKMEGDSVLLEVDGEEVLRLRQVS----- 116

Query: 505 LNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSA 553
            +    + LGG        +L + +     GC+     L  + ++  SA
Sbjct: 117 GHPIMRIALGGLLFPA--SNLRLPLVPALDGCLRRDSWLDKQAEISASA 163

>d1d2sa_ b.29.1.4 (A:) Sex hormone-binding globulin {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Sex hormone-binding globulin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.5 bits (203), Expect = 8e-19
 Identities = 27/155 (17%), Positives = 52/155 (33%), Gaps = 11/155 (7%)

Query: 672 RRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIK 731
           +  + + +F+  T D   ++ +            ++  + + +G  E         +T+ 
Sbjct: 24  KITKTSSSFEVRTWDPEGVIFYGDTNP-----KDDWFMLGLRDGRPEIQLHNHWAQLTV- 77

Query: 732 FSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPNMDL 791
            +   ++DG  H V V        LEVD   V +          +    I LGG      
Sbjct: 78  GAGPRLDDGRWHQVEVKMEGDSVLLEVDGEEVLRLRQVS----GHPIMRIALGGLLFPAS 133

Query: 792 MTGGRYVHPMSGLMMNIHIQNKHISNIGSSASSGL 826
                 V  + G +      +K    I +SA + L
Sbjct: 134 NLRLPLVPALDGCLRRDSWLDKQAE-ISASAPTSL 167

>d1d2sa_ b.29.1.4 (A:) Sex hormone-binding globulin {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Sex hormone-binding globulin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (99), Expect = 5e-05
 Identities = 14/121 (11%), Positives = 35/121 (28%), Gaps = 15/121 (12%)

Query: 23  LRITNARLQ---DSGKYKCEIQGHDSFRGSDYVKLNVERM-----MFVDGIGPFSGESQG 74
           L + + R +    +   +  +          + ++ V+       + VDG          
Sbjct: 57  LGLRDGRPEIQLHNHWAQLTVGAGPRLDDGRWHQVEVKMEGDSVLLEVDGEEVLRLRQVS 116

Query: 75  AFQGLDLSELVYIGAVPDFGEIHPSAGFSNGFKGCVSRLKYNKTEFELFKMAVERVGVDS 134
               + +     +G +      +          GC+ R  +   + E+   A     + S
Sbjct: 117 GHPIMRI----ALGGLLFPAS-NLRLPLVPALDGCLRRDSWLDKQAEI--SASAPTSLRS 169

Query: 135 C 135
           C
Sbjct: 170 C 170

>d1d2sa_ b.29.1.4 (A:) Sex hormone-binding globulin {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Sex hormone-binding globulin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (95), Expect = 1e-04
 Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 4/68 (5%)

Query: 219 QPAFKHGSYLAYPTPKTMRKFKVSLRLNPRDVRDGIILYSGQSDDGLGDFISLAIREKHM 278
            P  +  + + +   K + K   S  +   D  +G+I Y   +     D+  L +R+   
Sbjct: 9   GPGQEPIAVMTFDLTK-ITKTSSSFEVRTWD-PEGVIFYGDTNPKD--DWFMLGLRDGRP 64

Query: 279 EFRFDTGS 286
           E +     
Sbjct: 65  EIQLHNHW 72

>d2r1da1 b.29.1.4 (A:36-212) Ligand-binding domain of neurexin 1beta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 177

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Ligand-binding domain of neurexin 1beta
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 76.4 bits (187), Expect = 1e-16
 Identities = 33/174 (18%), Positives = 67/174 (38%), Gaps = 15/174 (8%)

Query: 658 GEGYVELK-KELIEERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGY 716
           G G +  K           + +A  F T  K A+L+     S       +++ + +  G 
Sbjct: 11  GGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLG----DYLELHIHQGK 66

Query: 717 LEYSYDLGDGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGES-PGSQDVI 775
           +   +++G   + I+ S   +NDG  H V  TR     +L+VDS  V +         + 
Sbjct: 67  IGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIF 126

Query: 776 NTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNIHIQNKHISNIGSSASSGLHVM 829
           N++  I +GG              P  G +  ++     + N+ +   + + ++
Sbjct: 127 NSQATIIIGGKEQG---------QPFQGQLSGLYYNGLKVLNMAAENDANIAIV 171

>d2r1da1 b.29.1.4 (A:36-212) Ligand-binding domain of neurexin 1beta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 177

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Ligand-binding domain of neurexin 1beta
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 76.4 bits (187), Expect = 1e-16
 Identities = 31/166 (18%), Positives = 62/166 (37%), Gaps = 21/166 (12%)

Query: 392 LSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVF 451
           ++Y   P    +     + + F       +++    S+     G GD++   +  G    
Sbjct: 15  ITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSS-----GLGDYLELHIHQGKIGV 69

Query: 452 RFDVG---LVVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLR 508
           +F+VG   + +  S   +   ++ VV   +      L V   P+I     G +L + N +
Sbjct: 70  KFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQ 129

Query: 509 TPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAV 554
             + +GG            E  + F G +S +   G  L ++N A 
Sbjct: 130 ATIIIGG-----------KEQGQPFQGQLSGLYYNG--LKVLNMAA 162

>d1h30a2 b.29.1.4 (A:461-678) Growth-arrest-specific protein Gas6 {Human (Homo sapiens) [TaxId: 9606]} Length = 218

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Growth-arrest-specific protein Gas6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.7 bits (159), Expect = 1e-12
 Identities = 26/181 (14%), Positives = 51/181 (28%), Gaps = 22/181 (12%)

Query: 406 HFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVGL-------- 457
              +    +P    G++                 V   +          +          
Sbjct: 46  EVEVVAHIRPAADTGVLFALWA-------PDLRAVPLSVALVDYHSTKKLKKQLVVLAVE 98

Query: 458 --VVLRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGG 515
              +   ++ +   +  VVT+     E  L V G       +  +  + L +        
Sbjct: 99  HTALALMEIKVCDGQEHVVTVSLRDGEATLEVDGTRGQSEVSAAQLQERLAVLERHLRSP 158

Query: 516 YNIYH----VTPSLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANIMDCSDLESSPVC 571
              +       P  S  VT  + GC++ ++V    LDL  +A   ++I   S     P  
Sbjct: 159 VLTFAGGLPDVPVTSAPVTAFYRGCMT-LEVNRRLLDLDEAAYKHSDITAHSCPPVEPAA 217

Query: 572 A 572
           A
Sbjct: 218 A 218

>d1h30a2 b.29.1.4 (A:461-678) Growth-arrest-specific protein Gas6 {Human (Homo sapiens) [TaxId: 9606]} Length = 218

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Growth-arrest-specific protein Gas6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.6 bits (156), Expect = 3e-12
 Identities = 29/192 (15%), Positives = 59/192 (30%), Gaps = 28/192 (14%)

Query: 644 CAKRVSIGSEVHFLGEGYVELKKELIEERRNEET-------IAFDFVTDDKNALLLWNGQ 696
           C      GS   + G G+     + +    +  T       +           +L     
Sbjct: 10  CFSVTERGS--FYPGSGFAFYSLDYMRTPLDVGTESTWEVEVVAHIRPAADTGVLFALWA 67

Query: 697 PSYKNGIGREFIAVAVVNGYLEYSYDLGDGVV-----TIKFSKKPVNDGIKHSVNVTRIN 751
           P          ++VA+V+ +          V+      +   +  V DG +H V V+  +
Sbjct: 68  PDL----RAVPLSVALVDYHSTKKLKKQLVVLAVEHTALALMEIKVCDGQEHVVTVSLRD 123

Query: 752 KFGSLEVDSVIVGKGESPGS--------QDVINTRGNIYLGGTPNMDLMTGGRYVHPMSG 803
              +LEVD        S           +  + +    + GG P++  +T         G
Sbjct: 124 GEATLEVDGTRGQSEVSAAQLQERLAVLERHLRSPVLTFAGGLPDVP-VTSAPVTAFYRG 182

Query: 804 LMMNIHIQNKHI 815
             M + +  + +
Sbjct: 183 C-MTLEVNRRLL 193

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (124), Expect = 2e-09
 Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 2/46 (4%)

Query: 571 CAPKPCQNYGICYPTDTSER--GYNCSCLTGYSGDHCEKENNMCMK 614
                C N G C+          Y C C  G++G  C +   M ++
Sbjct: 9   KEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPMKVQ 54

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (103), Expect = 2e-06
 Identities = 14/55 (25%), Positives = 18/55 (32%), Gaps = 6/55 (10%)

Query: 135 CNTCKSSKHNNCINNGLCQDAA---TRIGYTCICPPGFSGDRCSVLGEPCYPGAC 186
           C   +      C+N G C           Y C C PGF+G RC+           
Sbjct: 6   CAEKEK---TFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPMKVQNQE 57

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (80), Expect = 0.002
 Identities = 10/50 (20%), Positives = 14/50 (28%), Gaps = 1/50 (2%)

Query: 180 PCYPGA-CGDGSCQDVDGAMKCLCPIGTAGKRCEQKIKILQPAFKHGSYL 228
            C  G  C             C C  G  G RC + + +     +    L
Sbjct: 13  FCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPMKVQNQEKAEEL 62

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (79), Expect = 0.004
 Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 5/47 (10%)

Query: 618 CKNGGMCKVTPD-----SYECLCSLGYAPPNCAKRVSIGSEVHFLGE 659
           C NGG C +  D      Y C C  G+    C + V +  +     E
Sbjct: 14  CVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPMKVQNQEKAE 60

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]} Length = 53

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.7 bits (121), Expect = 5e-09
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 569 PVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKEN 609
           P      C N G+C   + S   Y C+C+ GYSGD C+  +
Sbjct: 7   PSSYDGYCLNGGVCMHIE-SLDSYTCNCVIGYSGDRCQTRD 46

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]} Length = 53

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.1 bits (117), Expect = 2e-08
 Identities = 18/42 (42%), Positives = 23/42 (54%)

Query: 133 DSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRC 174
           +S   C SS    C+N G+C    +   YTC C  G+SGDRC
Sbjct: 1   NSYPGCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRC 42

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]} Length = 53

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.6 bits (87), Expect = 2e-04
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 3/39 (7%)

Query: 180 PCYPGACG-DGSCQDVDG--AMKCLCPIGTAGKRCEQKI 215
             Y G C   G C  ++   +  C C IG +G RC+ + 
Sbjct: 8   SSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQTRD 46

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]} Length = 53

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.8 bits (85), Expect = 4e-04
 Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 3/42 (7%)

Query: 605 CEKENNMCMKGDVCKNGGMCKVTPD--SYECLCSLGYAPPNC 644
                     G  C NGG+C       SY C C +GY+   C
Sbjct: 2   SYPGCPSSYDG-YCLNGGVCMHIESLDSYTCNCVIGYSGDRC 42

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (118), Expect = 8e-09
 Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENN 610
           C+   C N G C         + C C  G++G  CE +  
Sbjct: 1   CSEPRCFNGGTCQQAL-YFSDFVCQCPEGFAGKSCEIDTR 39

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (101), Expect = 2e-06
 Identities = 13/31 (41%), Positives = 15/31 (48%)

Query: 144 NNCINNGLCQDAATRIGYTCICPPGFSGDRC 174
             C N G CQ A     + C CP GF+G  C
Sbjct: 4   PRCFNGGTCQQALYFSDFVCQCPEGFAGKSC 34

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 35

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.5 bits (116), Expect = 2e-08
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 3/36 (8%)

Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCE 606
           CA  PC + G C         + C C TG++G  C+
Sbjct: 3   CASSPCLHNGRCLDKIN---EFQCECPTGFTGHLCQ 35

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 35

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (100), Expect = 3e-06
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 5/39 (12%)

Query: 136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRC 174
           + C S   + C++NG C D      + C CP GF+G  C
Sbjct: 1   DECAS---SPCLHNGRCLDKIN--EFQCECPTGFTGHLC 34

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 35

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (89), Expect = 8e-05
 Identities = 7/27 (25%), Positives = 12/27 (44%)

Query: 618 CKNGGMCKVTPDSYECLCSLGYAPPNC 644
           C + G C    + ++C C  G+    C
Sbjct: 8   CLHNGRCLDKINEFQCECPTGFTGHLC 34

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 35

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (80), Expect = 0.001
 Identities = 13/41 (31%), Positives = 16/41 (39%), Gaps = 6/41 (14%)

Query: 172 DRCSVLGEPCYPGACGDGSCQDVDGAMKCLCPIGTAGKRCE 212
           D C+    PC       G C D     +C CP G  G  C+
Sbjct: 1   DECA--SSPCLHN----GRCLDKINEFQCECPTGFTGHLCQ 35

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (115), Expect = 3e-08
 Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 3/38 (7%)

Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKE 608
           C    C  +G C  T      Y C C  G+SG  CE+ 
Sbjct: 4   CTNTSCSGHGECVETIN---NYTCKCDPGFSGLKCEQI 38

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (92), Expect = 4e-05
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 5/39 (12%)

Query: 136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRC 174
             C +    +C  +G C +      YTC C PGFSG +C
Sbjct: 2   AACTN---TSCSGHGECVETIN--NYTCKCDPGFSGLKC 35

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (88), Expect = 1e-04
 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 180 PCYPGAC-GDGSCQDVDGAMKCLCPIGTAGKRCEQKI 215
            C   +C G G C +      C C  G +G +CEQ +
Sbjct: 3   ACTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQIV 39

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (86), Expect = 2e-04
 Identities = 10/31 (32%), Positives = 15/31 (48%)

Query: 618 CKNGGMCKVTPDSYECLCSLGYAPPNCAKRV 648
           C   G C  T ++Y C C  G++   C + V
Sbjct: 9   CSGHGECVETINNYTCKCDPGFSGLKCEQIV 39

>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]} Length = 41

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.3 bits (115), Expect = 3e-08
 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 3/38 (7%)

Query: 571 CAPKPCQNYGICYPTDTSERGYNCSC-LTGYSGDHCEK 607
           C   PCQN G C    T    Y C C  TG+ G++C  
Sbjct: 4   CCSNPCQNRGECM--STGFDQYKCDCTRTGFYGENCTT 39

>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]} Length = 41

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.2 bits (89), Expect = 1e-04
 Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 5/42 (11%)

Query: 136 NTCKSSKHNNCINNGLCQDAATRIGYTCICP-PGFSGDRCSV 176
           N C S   N C N G C        Y C C   GF G+ C+ 
Sbjct: 2   NPCCS---NPCQNRGECMSTGFD-QYKCDCTRTGFYGENCTT 39

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (114), Expect = 3e-08
 Identities = 13/36 (36%), Positives = 14/36 (38%), Gaps = 3/36 (8%)

Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCE 606
           C    C   G C  T      Y CSC  G+ G  CE
Sbjct: 4   CQDMSCSKQGECLETIG---NYTCSCYPGFYGPECE 36

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (95), Expect = 2e-05
 Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 5/39 (12%)

Query: 136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRC 174
            +C+     +C   G C +      YTC C PGF G  C
Sbjct: 2   ASCQD---MSCSKQGECLETIG--NYTCSCYPGFYGPEC 35

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (87), Expect = 1e-04
 Identities = 10/27 (37%), Positives = 12/27 (44%)

Query: 618 CKNGGMCKVTPDSYECLCSLGYAPPNC 644
           C   G C  T  +Y C C  G+  P C
Sbjct: 9   CSKQGECLETIGNYTCSCYPGFYGPEC 35

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (81), Expect = 0.001
 Identities = 11/35 (31%), Positives = 13/35 (37%), Gaps = 1/35 (2%)

Query: 180 PCYPGAC-GDGSCQDVDGAMKCLCPIGTAGKRCEQ 213
            C   +C   G C +  G   C C  G  G  CE 
Sbjct: 3   SCQDMSCSKQGECLETIGNYTCSCYPGFYGPECEY 37

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]} Length = 37

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 47.8 bits (114), Expect = 3e-08
 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 3/36 (8%)

Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCE 606
           CA  PCQN G C         Y C CL  + G +CE
Sbjct: 5   CASSPCQNGGSCKDQLQ---SYICFCLPAFEGRNCE 37

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]} Length = 37

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 42.4 bits (100), Expect = 3e-06
 Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 5/39 (12%)

Query: 136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRC 174
           + C S   + C N G C+D      Y C C P F G  C
Sbjct: 3   DQCAS---SPCQNGGSCKD--QLQSYICFCLPAFEGRNC 36

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]} Length = 37

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 38.1 bits (89), Expect = 1e-04
 Identities = 12/27 (44%), Positives = 14/27 (51%)

Query: 618 CKNGGMCKVTPDSYECLCSLGYAPPNC 644
           C+NGG CK    SY C C   +   NC
Sbjct: 10  CQNGGSCKDQLQSYICFCLPAFEGRNC 36

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]} Length = 37

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 33.9 bits (78), Expect = 0.003
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 171 GDRCSVLGEPCYPGACGDGSCQDVDGAMKCLCPIGTAGKRCE 212
           GD+C+    PC  G    GSC+D   +  C C     G+ CE
Sbjct: 2   GDQCA--SSPCQNG----GSCKDQLQSYICFCLPAFEGRNCE 37

>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]} Length = 48

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (114), Expect = 4e-08
 Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 569 PVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCE 606
           P+     C + G+C   + +   Y C+C+ GY G+ C+
Sbjct: 5   PLSHDGYCLHDGVCMYIE-ALDKYACNCVVGYIGERCQ 41

>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]} Length = 48

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (109), Expect = 2e-07
 Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 3/41 (7%)

Query: 134 SCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRC 174
            C          C+++G+C        Y C C  G+ G+RC
Sbjct: 3   ECPLSHD---GYCLHDGVCMYIEALDKYACNCVVGYIGERC 40

>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]} Length = 48

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (82), Expect = 0.001
 Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 3/38 (7%)

Query: 180 PCYPGACG-DGSCQDVDG--AMKCLCPIGTAGKRCEQK 214
             + G C  DG C  ++      C C +G  G+RC+ +
Sbjct: 6   LSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQYR 43

>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]} Length = 48

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (81), Expect = 0.001
 Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 3/41 (7%)

Query: 606 EKENNMCMKGDVCKNGGMCKVTPD--SYECLCSLGYAPPNC 644
           + E  +   G  C + G+C        Y C C +GY    C
Sbjct: 1   DSECPLSHDG-YCLHDGVCMYIEALDKYACNCVVGYIGERC 40

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (114), Expect = 4e-08
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 3/36 (8%)

Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCE 606
           C   PCQN G C         Y C+CL G+ G +CE
Sbjct: 3   CETSPCQNQGKCKDGLG---EYTCTCLEGFEGKNCE 35

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (102), Expect = 2e-06
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 5/41 (12%)

Query: 136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSV 176
           + C++   + C N G C+D      YTC C  GF G  C +
Sbjct: 1   DQCET---SPCQNQGKCKDGLG--EYTCTCLEGFEGKNCEL 36

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (89), Expect = 9e-05
 Identities = 11/27 (40%), Positives = 13/27 (48%)

Query: 618 CKNGGMCKVTPDSYECLCSLGYAPPNC 644
           C+N G CK     Y C C  G+   NC
Sbjct: 8   CQNQGKCKDGLGEYTCTCLEGFEGKNC 34

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (79), Expect = 0.002
 Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 6/41 (14%)

Query: 172 DRCSVLGEPCYPGACGDGSCQDVDGAMKCLCPIGTAGKRCE 212
           D+C     PC       G C+D  G   C C  G  GK CE
Sbjct: 1   DQCE--TSPCQNQ----GKCKDGLGEYTCTCLEGFEGKNCE 35

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (114), Expect = 4e-08
 Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 3/36 (8%)

Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCE 606
           C   PCQN   C         + C C+ GY G HCE
Sbjct: 4   CVSNPCQNDATCLDQIG---EFQCICMPGYEGVHCE 36

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (101), Expect = 2e-06
 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 5/41 (12%)

Query: 136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSV 176
           N C S   N C N+  C D      + CIC PG+ G  C V
Sbjct: 2   NECVS---NPCQNDATCLD--QIGEFQCICMPGYEGVHCEV 37

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (89), Expect = 9e-05
 Identities = 8/27 (29%), Positives = 13/27 (48%)

Query: 618 CKNGGMCKVTPDSYECLCSLGYAPPNC 644
           C+N   C      ++C+C  GY   +C
Sbjct: 9   CQNDATCLDQIGEFQCICMPGYEGVHC 35

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (78), Expect = 0.003
 Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 6/41 (14%)

Query: 172 DRCSVLGEPCYPGACGDGSCQDVDGAMKCLCPIGTAGKRCE 212
           + C     PC        +C D  G  +C+C  G  G  CE
Sbjct: 2   NECV--SNPCQND----ATCLDQIGEFQCICMPGYEGVHCE 36

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (114), Expect = 4e-08
 Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 3/36 (8%)

Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCE 606
           C   PC N G C         Y C C  G+ G +CE
Sbjct: 6   CESNPCLNGGSCKDDIN---SYECWCPFGFEGKNCE 38

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (102), Expect = 2e-06
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 5/41 (12%)

Query: 136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSV 176
           + C+S   N C+N G C+D      Y C CP GF G  C +
Sbjct: 4   DQCES---NPCLNGGSCKD--DINSYECWCPFGFEGKNCEL 39

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (90), Expect = 6e-05
 Identities = 14/27 (51%), Positives = 16/27 (59%)

Query: 618 CKNGGMCKVTPDSYECLCSLGYAPPNC 644
           C NGG CK   +SYEC C  G+   NC
Sbjct: 11  CLNGGSCKDDINSYECWCPFGFEGKNC 37

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (79), Expect = 0.003
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 6/41 (14%)

Query: 172 DRCSVLGEPCYPGACGDGSCQDVDGAMKCLCPIGTAGKRCE 212
           D+C     PC  G    GSC+D   + +C CP G  GK CE
Sbjct: 4   DQCE--SNPCLNG----GSCKDDINSYECWCPFGFEGKNCE 38

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

 Score = 47.1 bits (112), Expect = 7e-08
 Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 3/38 (7%)

Query: 571 CAPKPCQNYGICYPTDTSERGYNCSC-LTGYSGDHCEK 607
           C   PCQ+ GIC         Y C C  TGYSG +C  
Sbjct: 5   CCYYPCQHQGIC--VRFGLDRYQCDCTRTGYSGPNCTI 40

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

 Score = 38.3 bits (89), Expect = 9e-05
 Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 5/42 (11%)

Query: 136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPP-GFSGDRCSV 176
           N C       C + G+C        Y C C   G+SG  C++
Sbjct: 3   NPCCY---YPCQHQGICVRFGLD-RYQCDCTRTGYSGPNCTI 40

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} Length = 48

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (108), Expect = 3e-07
 Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 4/47 (8%)

Query: 562 CSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKE 608
           C  L     CA   C + G C         ++C C +G+ G  C++E
Sbjct: 2   CLVLPLEHPCASLCCGH-GTCIDGIG---SFSCDCRSGWEGRFCQRE 44

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} Length = 48

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (105), Expect = 8e-07
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 173 RCSVL--GEPCYPGACGDGSCQDVDGAMKCLCPIGTAGKRCEQKIKIL 218
           +C VL    PC    CG G+C D  G+  C C  G  G+ C++++  L
Sbjct: 1   QCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFL 48

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} Length = 48

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (84), Expect = 5e-04
 Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 6/41 (14%)

Query: 134 SCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRC 174
             + C S     C  +G C D      ++C C  G+ G  C
Sbjct: 7   LEHPCAS----LCCGHGTCID--GIGSFSCDCRSGWEGRFC 41

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (106), Expect = 4e-07
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 6/45 (13%)

Query: 132 VDSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSV 176
           VD C    S   N C + G C +  T   + C C  G++G RC +
Sbjct: 3   VDEC----SLGANPCEHAGKCIN--TLGSFECQCLQGYTGPRCEI 41

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (103), Expect = 1e-06
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 3/36 (8%)

Query: 571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCE 606
               PC++ G C  T  S   + C CL GY+G  CE
Sbjct: 8   LGANPCEHAGKCINTLGS---FECQCLQGYTGPRCE 40

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (94), Expect = 2e-05
 Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 6/42 (14%)

Query: 603 DHCEKENNMCMKGDVCKNGGMCKVTPDSYECLCSLGYAPPNC 644
           D C    N C      ++ G C  T  S+EC C  GY  P C
Sbjct: 4   DECSLGANPC------EHAGKCINTLGSFECQCLQGYTGPRC 39

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (90), Expect = 7e-05
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 4/42 (9%)

Query: 172 DRCSVLGEPCYPGACGDGSCQDVDGAMKCLCPIGTAGKRCEQ 213
           D CS+   PC       G C +  G+ +C C  G  G RCE 
Sbjct: 4   DECSLGANPCEHA----GKCINTLGSFECQCLQGYTGPRCEI 41

>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 50

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Betacellulin-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (99), Expect = 5e-06
 Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 135 CNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRC 174
            + C     + CI        A +   +C+C  G+ G RC
Sbjct: 5   FSRCPKQYKHYCIKGRCRFVVAEQ-TPSCVCDEGYIGARC 43

>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 50

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Betacellulin-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (92), Expect = 4e-05
 Identities = 8/33 (24%), Positives = 11/33 (33%), Gaps = 2/33 (6%)

Query: 575 PCQNYGICYPTDTSERGYNCSCLTGYSGDHCEK 607
            C      +         +C C  GY G  CE+
Sbjct: 15  YCIKGRCRFVVAEQT--PSCVCDEGYIGARCER 45

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 42.1 bits (98), Expect = 1e-05
 Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 3/88 (3%)

Query: 295 APAF--NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQE 352
           AP +   P        G  +T+ C           WS      +    A   ++ L ++ 
Sbjct: 2   APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHN-AKPLSGGRATVTDSGLVIKG 60

Query: 353 IKNSDAGMYVCKVSNKDMTVEIPSILLV 380
           +KN D G Y C+ +N+       +++ V
Sbjct: 61  VKNGDKGYYGCRATNEHGDKYFETLVQV 88

>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 46

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epiregulin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (95), Expect = 2e-05
 Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 1/37 (2%)

Query: 138 CKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRC 174
           C S  +  C++ G C          C C  G++G RC
Sbjct: 6   CSSDMNGYCLH-GQCIYLVDMSQNYCRCEVGYTGVRC 41

>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 46

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epiregulin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (88), Expect = 2e-04
 Identities = 10/38 (26%), Positives = 12/38 (31%), Gaps = 2/38 (5%)

Query: 569 PVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCE 606
                  C +    Y  D       C C  GY+G  CE
Sbjct: 7   SSDMNGYCLHGQCIYLVD--MSQNYCRCEVGYTGVRCE 42

>d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 49

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Transforming growth factor alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (94), Expect = 2e-05
 Identities = 10/40 (25%), Positives = 13/40 (32%), Gaps = 1/40 (2%)

Query: 135 CNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRC 174
            N C  S    C +              C+C  G+ G RC
Sbjct: 4   FNDCPDSHTQFCFHGTCRFLVQED-KPACVCHSGYVGARC 42

>d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 49

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Transforming growth factor alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (85), Expect = 4e-04
 Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 2/31 (6%)

Query: 576 CQNYGICYPTDTSERGYNCSCLTGYSGDHCE 606
           C +    +     +    C C +GY G  CE
Sbjct: 15  CFHGTCRFLVQEDK--PACVCHSGYVGARCE 43

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 40.6 bits (94), Expect = 7e-05
 Identities = 14/80 (17%), Positives = 28/80 (35%), Gaps = 5/80 (6%)

Query: 306 APYGSKITLTCNNDLEAPVEYTWSK-----RSNGHVLPFGAFSRENTLTLQEIKNSDAGM 360
            P  + +   C           W K     +    +  +   ++  +L ++ +  SD G 
Sbjct: 17  VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGN 76

Query: 361 YVCKVSNKDMTVEIPSILLV 380
           Y C V N+  ++     L V
Sbjct: 77  YTCVVENEYGSINHTYHLDV 96

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.4 bits (94), Expect = 9e-05
 Identities = 15/100 (15%), Positives = 31/100 (31%), Gaps = 23/100 (23%)

Query: 300 PVSTKEAPYGSKITLTCNNDLEAPVEYTWSK--------------RSNGHVLPFGAFSRE 345
           P    E    + + L  +N   A   + W K               ++       A+S  
Sbjct: 8   PPQVAE---DNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGR 64

Query: 346 ------NTLTLQEIKNSDAGMYVCKVSNKDMTVEIPSILL 379
                  +L  Q I   D G+Y   +++++      ++  
Sbjct: 65  EIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRF 104

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 1e-04
 Identities = 19/100 (19%), Positives = 29/100 (29%), Gaps = 7/100 (7%)

Query: 296 PAF-NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKR----SNGHVLPFGAFSRENTLTL 350
           P        ++   G  + L        P+  TW K          +        + LT+
Sbjct: 1   PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTI 60

Query: 351 QEIKNSDAGMYVCKVSNKDMTVEIPSILLVTD--SVPLFT 388
              +    G Y   V NK  + +    L V D    P  T
Sbjct: 61  LAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPPAGT 100

>d1kloa1 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]} Length = 55

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Laminin-type module
domain: Laminin gamma1 chain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.4 bits (89), Expect = 1e-04
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 1/51 (1%)

Query: 575 PCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNMCMKGDVCKNGGMCK 625
           PC     C     ++      C TG +G  CE  ++    GD   + G  +
Sbjct: 2   PCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYF-GDPLGSNGPVR 51

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 38.6 bits (89), Expect = 3e-04
 Identities = 18/88 (20%), Positives = 28/88 (31%), Gaps = 4/88 (4%)

Query: 295 APAFNPV--STKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQE 352
           AP+      +   A  G  +TL C        +  W  R           S E  L +Q 
Sbjct: 4   APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKW--RKLDGSQTSKWLSSEPLLHIQN 61

Query: 353 IKNSDAGMYVCKVSNKDMTVEIPSILLV 380
           +   D G Y C+  N          +++
Sbjct: 62  VDFEDEGTYECEAENIKGRDTYQGRIII 89

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.0 bits (87), Expect = 5e-04
 Identities = 21/95 (22%), Positives = 26/95 (27%), Gaps = 5/95 (5%)

Query: 296 PAF-NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFG----AFSRENTLTL 350
           P F       E   G      C     +P   TW K                  +  LT+
Sbjct: 2   PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTI 61

Query: 351 QEIKNSDAGMYVCKVSNKDMTVEIPSILLVTDSVP 385
             +K  D G Y  +  N   T E    L VT    
Sbjct: 62  NRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHSE 96

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 37.2 bits (85), Expect = 7e-04
 Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 1/86 (1%)

Query: 296 PAF-NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRENTLTLQEIK 354
           P + + ++  EA  GS +  +C    +      W +                 L   ++ 
Sbjct: 2   PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLV 61

Query: 355 NSDAGMYVCKVSNKDMTVEIPSILLV 380
             D+GMY C   NK  TV   + L V
Sbjct: 62  LEDSGMYQCVAENKHGTVYASAELTV 87

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 8e-04
 Identities = 17/81 (20%), Positives = 27/81 (33%), Gaps = 3/81 (3%)

Query: 290 LYSNDAPAFN-PVSTKEAPYGSKITLTCN-NDLEAPVEYTWSKRSNGHVLPFGAFSRENT 347
           L     PA         +  G  +TLTC   + E      W  R          ++    
Sbjct: 1   LAPRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGR 60

Query: 348 -LTLQEIKNSDAGMYVCKVSN 367
            L L+ ++  D+G Y C  + 
Sbjct: 61  RLLLRSVQLHDSGNYSCYRAG 81

>d1xdtr_ g.3.11.1 (R:) Heparin-binding epidermal growth factor, HBEGF {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heparin-binding epidermal growth factor, HBEGF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (81), Expect = 0.001
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 138 CKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVL 177
           C     + CI+ G C+        +CIC PG+ G+RC  L
Sbjct: 2   CLRKYKDFCIH-GECKYVKELRAPSCICHPGYHGERCHGL 40

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (81), Expect = 0.001
 Identities = 8/37 (21%), Positives = 12/37 (32%)

Query: 603 DHCEKENNMCMKGDVCKNGGMCKVTPDSYECLCSLGY 639
           D C   +    +    +   +C      Y C C  GY
Sbjct: 5   DECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGY 41

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 11/90 (12%), Positives = 19/90 (21%), Gaps = 5/90 (5%)

Query: 295 APAF-NPVSTKEAPYGSKITLTCNNDLEAPVEYTWSKRSNGHVLPFGAFSRE----NTLT 349
            P   +  +       +   L C  +          K+           +       +L 
Sbjct: 2   YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLV 61

Query: 350 LQEIKNSDAGMYVCKVSNKDMTVEIPSILL 379
               + SD G Y C             I  
Sbjct: 62  FLRPQASDEGHYQCFAETPAGVASSRVISF 91

>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-like domain of nidogen-1
domain: EGF-like domain of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.7 bits (77), Expect = 0.004
 Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 3/36 (8%)

Query: 137 TCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGD 172
           TC +++H  C  +  C+D     G+ C C   ++G+
Sbjct: 1   TCANNRHQ-CSVHAECRD--YATGFCCRCVANYTGN 33

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	834
d1dyka1	189	Laminin alpha2 chain {Mouse (Mus musculus) [TaxId:	99.96
d1pz7a_	195	Agrin {Chicken (Gallus gallus) [TaxId: 9031]}	99.95
d1h30a1	191	Growth-arrest-specific protein Gas6 {Human (Homo s	99.93
d1dyka2	185	Laminin alpha2 chain {Mouse (Mus musculus) [TaxId:	99.93
d2r1da1	177	Ligand-binding domain of neurexin 1beta {Rat (Ratt	99.92
d1d2sa_	170	Sex hormone-binding globulin {Human (Homo sapiens)	99.91
d1dyka1	189	Laminin alpha2 chain {Mouse (Mus musculus) [TaxId:	99.89
d1pz7a_	195	Agrin {Chicken (Gallus gallus) [TaxId: 9031]}	99.87
d1h30a2	218	Growth-arrest-specific protein Gas6 {Human (Homo s	99.85
d1d2sa_	170	Sex hormone-binding globulin {Human (Homo sapiens)	99.82
d1dyka2	185	Laminin alpha2 chain {Mouse (Mus musculus) [TaxId:	99.81
d2r1da1	177	Ligand-binding domain of neurexin 1beta {Rat (Ratt	99.8
d1h30a1	191	Growth-arrest-specific protein Gas6 {Human (Homo s	99.77
d1h30a2	218	Growth-arrest-specific protein Gas6 {Human (Homo s	99.69
d2vj3a2	39	Neurogenic locus notch homolog protein 1, Notch1 {	99.19
d1tpga1	41	Plasminogen activator (tissue-type), t-PA {Human (	99.19
d1xkba1	39	Factor X, N-terminal module {Human (Homo sapiens)	99.16
d2vj3a3	35	Neurogenic locus notch homolog protein 1, Notch1 {	99.16
d2vj3a2	39	Neurogenic locus notch homolog protein 1, Notch1 {	99.14
d1edmb_	39	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	99.13
d1xkba1	39	Factor X, N-terminal module {Human (Homo sapiens)	99.13
d2vj3a3	35	Neurogenic locus notch homolog protein 1, Notch1 {	99.12
d2c4fl1	37	Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}	99.11
d1g1ta2	39	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	99.1
d1tpga1	41	Plasminogen activator (tissue-type), t-PA {Human (	99.09
d1edmb_	39	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	99.09
d2c4fl1	37	Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}	99.08
d1g1ta2	39	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	99.06
d1autl1	48	Activated protein c (autoprothrombin IIa) {Human (	99.04
d1g1sa2	40	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	99.02
d2vj3a1	42	Neurogenic locus notch homolog protein 1, Notch1 {	99.0
d1g1sa2	40	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	99.0
d2vj3a1	42	Neurogenic locus notch homolog protein 1, Notch1 {	98.99
d1autl1	48	Activated protein c (autoprothrombin IIa) {Human (	98.96
d2erfa1	206	Thrombospondin 1 N-terminal domain {Human (Homo sa	98.9
d1cvua2	41	Prostaglandin H2 synthase-1, EGF-like module {Mous	98.88
d1q4ga2	42	Prostaglandin H2 synthase-1, EGF-like module {Shee	98.87
d1haea_	63	Heregulin-alpha, EGF-like domain {Human (Homo sapi	98.86
d1cvua2	41	Prostaglandin H2 synthase-1, EGF-like module {Mous	98.83
d1q4ga2	42	Prostaglandin H2 synthase-1, EGF-like module {Shee	98.82
d3egfa_	53	Epidermal growth factor, EGF {Mouse (Mus musculus)	98.81
d1nqlb_	48	Epidermal growth factor, EGF {Human (Homo sapiens)	98.77
d1haea_	63	Heregulin-alpha, EGF-like domain {Human (Homo sapi	98.61
d3egfa_	53	Epidermal growth factor, EGF {Mouse (Mus musculus)	98.47
d1b09a_	206	C-reactive protein (CRP) {Human (Homo sapiens) [Ta	98.41
d1saca_	204	Serum amyloid P component (SAP) {Human (Homo sapie	98.38
d1nqlb_	48	Epidermal growth factor, EGF {Human (Homo sapiens)	98.37
d1k36a_	46	Epiregulin, EGF-domain {Human (Homo sapiens) [TaxI	98.35
d2slia1	196	Leech intramolecular trans-sialidase, N-terminal d	98.14
d2erfa1	206	Thrombospondin 1 N-terminal domain {Human (Homo sa	98.02
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	98.02
d1emoa2	39	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.01
d1lmja1	44	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.0
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	97.97
d1emoa1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.97
d1ioxa_	50	Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]	97.93
d1uzka2	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.92
d2i9aa1	40	Plasminogen activator (urokinase-type) {Human (Hom	97.89
d2i9aa1	40	Plasminogen activator (urokinase-type) {Human (Hom	97.88
d1lmja2	42	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.85
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	97.85
d1moxc_	49	Transforming growth factor alpha {Human (Homo sapi	97.81
d1uzka1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.79
d1a8da1	247	Tetanus neurotoxin {Clostridium tetani [TaxId: 151	97.77
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	97.73
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	97.73
d3btaa1	207	Botulinum neurotoxin {Clostridium botulinum, serot	97.72
d1b09a_	206	C-reactive protein (CRP) {Human (Homo sapiens) [Ta	97.71
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	97.64
d1epwa1	218	Botulinum neurotoxin {Clostridium botulinum, serot	97.63
d1emoa1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.62
d1saca_	204	Serum amyloid P component (SAP) {Human (Homo sapie	97.61
d1k36a_	46	Epiregulin, EGF-domain {Human (Homo sapiens) [TaxI	97.57
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	97.53
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	97.52
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	97.52
d1ioxa_	50	Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]	97.47
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	97.46
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	97.44
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	97.42
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	97.42
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	97.41
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	97.39
d1lmja1	44	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.35
d1dx5i3	40	Thrombomodulin, different EGF-like domains {Human	97.35
d1i0ua2	41	Low density lipoprotein (LDL) receptor, different	97.32
d1uzka1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.31
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	97.31
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	97.3
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	97.3
d1moxc_	49	Transforming growth factor alpha {Human (Homo sapi	97.3
d1emoa2	39	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.29
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	97.25
d1xdtr_	41	Heparin-binding epidermal growth factor, HBEGF {Hu	97.24
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	97.22
d1apqa_	53	Complement protease C1R {Human (Homo sapiens) [Tax	97.17
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	97.15
d1i0ua2	41	Low density lipoprotein (LDL) receptor, different	97.12
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	97.12
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	97.12
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	97.11
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	97.1
d1dx5i3	40	Thrombomodulin, different EGF-like domains {Human	97.09
d1uzka2	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.09
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	97.05
d1lmja2	42	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.04
d1nt0a3	45	Mannose-binding protein associated serine protease	97.0
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	96.99
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	96.98
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	96.98
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	96.9
d1pd6a_	94	Cardiac myosin binding protein C, different domain	96.87
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	96.86
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	96.86
d1szba2	45	Mannose-binding protein associated serine protease	96.86
d1kloa1	55	Laminin gamma1 chain {Mouse (Mus musculus) [TaxId:	96.82
d1gl4a2	40	EGF-like domain of nidogen-1 {Mouse (Mus musculus)	96.78
d1gl4a2	40	EGF-like domain of nidogen-1 {Mouse (Mus musculus)	96.78
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	96.75
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	96.75
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	96.74
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	96.72
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	96.69
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	96.68
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	96.63
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	96.63
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	96.6
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	96.53
d1nzia2	42	Complement C1S component {Human (Homo sapiens) [Ta	96.52
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	96.52
d2slia1	196	Leech intramolecular trans-sialidase, N-terminal d	96.48
d3bpse1	40	Low density lipoprotein (LDL) receptor, different	96.45
d2avga1	110	Cardiac myosin binding protein C, different domain	96.39
d1nzia2	42	Complement C1S component {Human (Homo sapiens) [Ta	96.38
d1gxea_	130	Cardiac myosin binding protein C, different domain	96.35
d3btaa1	207	Botulinum neurotoxin {Clostridium botulinum, serot	96.34
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	96.33
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	96.32
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	96.16
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	96.1
d1apqa_	53	Complement protease C1R {Human (Homo sapiens) [Tax	96.08
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	96.06
d1epwa1	218	Botulinum neurotoxin {Clostridium botulinum, serot	96.0
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	95.93
d1kloa1	55	Laminin gamma1 chain {Mouse (Mus musculus) [TaxId:	95.9
d1xdtr_	41	Heparin-binding epidermal growth factor, HBEGF {Hu	95.88
d1a8da1	247	Tetanus neurotoxin {Clostridium tetani [TaxId: 151	95.84
d1szba2	45	Mannose-binding protein associated serine protease	95.76
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	95.69
d3bpse1	40	Low density lipoprotein (LDL) receptor, different	95.59
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	95.5
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	95.45
d1nt0a3	45	Mannose-binding protein associated serine protease	95.43
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	95.3
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	95.21
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	95.18
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	95.11
d2ah2a1	225	Trypanosoma sialidase, C-terminal domain {Parasiti	94.1
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	93.89
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	91.76
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	91.4
d1n1ta1	222	Trypanosoma sialidase, C-terminal domain {Trypanos	91.2
d1ijqa2	50	Low density lipoprotein (LDL) receptor, different	90.99
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	90.47
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	90.04
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	89.94
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	89.74
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	89.43
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	89.41
d1autl2	50	Activated protein c (autoprothrombin IIa) {Human (	89.37
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	89.19
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	88.95
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	88.54
d1autl2	50	Activated protein c (autoprothrombin IIa) {Human (	88.14
d1dx5i1	43	Thrombomodulin, different EGF-like domains {Human	86.63
d2p3ua1	51	Factor X, N-terminal module {Human (Homo sapiens)	86.57
d1jv2b5	43	Integrin beta EGF-like domains {Human (Homo sapien	86.24
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	85.98
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	85.83
d1jv2b4	31	Integrin beta EGF-like domains {Human (Homo sapien	85.82
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	85.75
d1hnfa1	101	CD2, first domain {Human (Homo sapiens) [TaxId: 96	85.64
d1kigl_	51	Factor X, N-terminal module {Cow (Bos taurus) [Tax	84.95
d1l3ya_	41	Integrin beta EGF-like domains {Human (Homo sapien	84.86
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	84.12
d1ijqa2	50	Low density lipoprotein (LDL) receptor, different	83.85
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	83.13
d1dx5i1	43	Thrombomodulin, different EGF-like domains {Human	82.89
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	82.83
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	82.72
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	81.52
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	81.26
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	81.15
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	80.66
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	80.29
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	80.26
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	80.13
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	80.09
d2p3ua1	51	Factor X, N-terminal module {Human (Homo sapiens)	80.01

>d1dyka1 b.29.1.4 (A:2744-2932) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Laminin alpha2 chain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=5.7e-28  Score=234.71  Aligned_cols=171  Identities=24%  Similarity=0.405  Sum_probs=139.9

Q ss_pred             eeeEEc--CCceeeechhhhhhccCcceEEEEEEeCCCCeeEEecCCCCCCCCCCcceEEEEEECCEEEEEEEcCCcEEE
Q psy9228         652 SEVHFL--GEGYVELKKELIEERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVT  729 (834)
Q Consensus       652 ~~~~F~--g~s~~~~~~~~~~~~~~~~~i~~~frT~~~~GlLl~~~~~~~~~~~~~~~~~l~l~~G~l~~~~~~g~~~~~  729 (834)
                      .++.|.  ++||+.++..... .+...+|+|+|||.+++|+|||++...     ..|||+|+|.||+|++.+++|++...
T Consensus        15 ~~~~fg~s~~s~~~~~~~~~~-~~~~~~i~~~frT~~~~GlL~~~~~~~-----~~dfi~l~l~~G~l~~~~~~g~~~~~   88 (189)
T d1dyka1          15 GSKQFGLSRNSHIAIAFDDTK-VKNRLTIELEVRTEAESGLLFYMARIN-----HADFATVQLRNGFPYFSYDLGSGDTS   88 (189)
T ss_dssp             TCEECCSSTTCEEEEECCGGG-GSSEEEEEEEEEECCSCEEEEEEECTT-----SSSEEEEEEETTEEEEEEESSSCEEE
T ss_pred             CceecCCCCCceEEEecCccc-ccccEEEEEEEEECCCCEEEEEEcCCC-----CCcEEEEEEECCEEEEEEECCCccEE
Confidence            356674  4789998754332 357789999999999999999987543     36899999999999999999999888


Q ss_pred             EEeCCceecCCCcEEEEEEEECCEEEEEEcCeeeecccCCCCccceecCCceEEcCcCCCCCCC-CCccCCCceEEEEEE
Q psy9228         730 IKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPNMDLMT-GGRYVHPMSGLMMNI  808 (834)
Q Consensus       730 l~~s~~~~nDg~wH~V~i~r~~~~~~l~VD~~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~~~~-~~~~~~~F~GCi~~v  808 (834)
                      +. +..+|+||+||+|.|.|.++.++|+||+...... .++....++..+.|||||+|...... ......+|+|||++|
T Consensus        89 ~~-~~~~v~Dg~WH~V~v~~~~~~~~l~VD~~~~~~~-~~~~~~~l~~~~~lyiGG~p~~~~~~~~~~~~~~F~GCi~~v  166 (189)
T d1dyka1          89 TM-IPTKINDGQWHKIKIVRVKQEGILYVDDASSQTI-SPKKADILDVVGILYVGGLPINYTTRRIGPVTYSLDGCVRNL  166 (189)
T ss_dssp             EE-CCSCCCSSSCEEEEEEEETTEEEEEETTEEEEEE-CSTTCCCCCCCSEEEESSCCTTCCCCSSCSCCSBCSEEEEEE
T ss_pred             ec-CCcEeeCCCEEEEEEEEcccEEEEEECCcceeeE-ccCcccccccccceEEecccccccccccCcCCCCcEEEEeEE
Confidence            87 7789999999999999999999999999876543 44555667888899999999754332 234567899999999


Q ss_pred             EECCceecccCCCCCCCccccccc
Q psy9228         809 HIQNKHISNIGSSASSGLHVMPWI  832 (834)
Q Consensus       809 ~in~~~~~~l~~~a~~~~nv~~c~  832 (834)
                      +||++ .++|.+ +....||.+||
T Consensus       167 ~in~~-~~~L~~-~~~~~~V~~Cf  188 (189)
T d1dyka1         167 HMEQA-PVDLDQ-PTSSFHVGTCF  188 (189)
T ss_dssp             EESSS-CCCTTS-CSEEESCBCCB
T ss_pred             EECCE-EecCCC-cccCCCccCcc
Confidence            99996 568876 46999999998

>d1pz7a_ b.29.1.4 (A:) Agrin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Agrin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.95  E-value=3.4e-27  Score=230.39  Aligned_cols=174  Identities=22%  Similarity=0.440  Sum_probs=143.2

Q ss_pred             eeeEEcCCceeeechhhhhh-------------ccCcceEEEEEEeCCCCeeEEecCCCCCCCCCCcceEEEEEECCEEE
Q psy9228         652 SEVHFLGEGYVELKKELIEE-------------RRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLE  718 (834)
Q Consensus       652 ~~~~F~g~s~~~~~~~~~~~-------------~~~~~~i~~~frT~~~~GlLl~~~~~~~~~~~~~~~~~l~l~~G~l~  718 (834)
                      .++.|+|.+|++|.......             .....+|+|+|||.+++|+|||++...    ...||++|+|.+|+|+
T Consensus         7 ~~~~F~G~sy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~frT~~~~GlLly~~~~~----~~~df~~l~L~~G~l~   82 (195)
T d1pz7a_           7 EAIAFDGRTYMEYHNAVTKSPDALDYPAEPSEKALQSNHFELSIKTEATQGLILWSGKGL----ERSDYIALAIVDGFVQ   82 (195)
T ss_dssp             CCEEEESSCCEEEECCSCCC-------CCSSCEEESEEEEEEEEEECCSSEEEEEESCCS----TTCCEEEEEEETTEEE
T ss_pred             cCEEECCceEEEEecccccccccccccccccccccceeEEEEEEEeCCCCEEEEEEcCCC----CCCCEEEEEEECCEEE
Confidence            47889999999985322111             114568999999999999999987643    2468999999999999


Q ss_pred             EEEEcCCcEEEEEeCCceecCCCcEEEEEEEECCEEEEEEcCeeeecccCCCCccceecCCceEEcCcCCCCCCC--CCc
Q psy9228         719 YSYDLGDGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPNMDLMT--GGR  796 (834)
Q Consensus       719 ~~~~~g~~~~~l~~s~~~~nDg~wH~V~i~r~~~~~~l~VD~~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~~~~--~~~  796 (834)
                      +.+++|++...+. +..+|+||+||+|.|.|.++.++|+||+........++....++..+.+||||+|......  ...
T Consensus        83 ~~~~~g~~~~~~~-~~~~v~dg~wh~V~i~r~~~~~~l~VD~~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~~~~~~~~~  161 (195)
T d1pz7a_          83 MMYDLGSKPVVLR-STVPINTNHWTHIKAYRVQREGSLQVGNEAPITGSSPLGATQLDTDGALWLGGMERLSVAHKLPKA  161 (195)
T ss_dssp             EEEESSSCCEEEE-EEEECCSSSCEEEEEEEETTEEEEEETTSCCEEEECCSSCCCEEECCEEEESSCSCCSTTTTSCGG
T ss_pred             EEEEcCCCCEEEe-CCceecCCCEEEEEEEEcCcEEEEEEeccceeeeeCCCCceeeecCCceEEccccccccccccccc
Confidence            9999999888777 7789999999999999999999999998776666666666778888999999999754332  234


Q ss_pred             cCCCceEEEEEEEECCceecccCCCCCCCcccccc
Q psy9228         797 YVHPMSGLMMNIHIQNKHISNIGSSASSGLHVMPW  831 (834)
Q Consensus       797 ~~~~F~GCi~~v~in~~~~~~l~~~a~~~~nv~~c  831 (834)
                      ...+|+|||++|+||++ .++|.+.++.+.||..|
T Consensus       162 ~~~~F~GCI~~l~in~~-~l~l~~~~~~~~~v~~C  195 (195)
T d1pz7a_         162 YSTGFIGCIRDVIVDRQ-ELHLVEDALNNPTILHC  195 (195)
T ss_dssp             GGSBCEEEEEEEEETTE-ECCTTTSCSSCCCCCBC
T ss_pred             CcCCCEEEEEEEEECCE-ECCCchHhhcCCCCCCC
Confidence            56789999999999985 67888889999999988

>d1h30a1 b.29.1.4 (A:261-451) Growth-arrest-specific protein Gas6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Growth-arrest-specific protein Gas6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=6.6e-26  Score=220.79  Aligned_cols=149  Identities=20%  Similarity=0.208  Sum_probs=112.4

Q ss_pred             eEEcCCceeeechhhhhhccCcceEEEEEEeCCCCeeEEecCCCCCCCCCCcceEEEEEECCEEEEEEEcCCcEEEEEeC
Q psy9228         654 VHFLGEGYVELKKELIEERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFS  733 (834)
Q Consensus       654 ~~F~g~s~~~~~~~~~~~~~~~~~i~~~frT~~~~GlLl~~~~~~~~~~~~~~~~~l~l~~G~l~~~~~~g~~~~~l~~s  733 (834)
                      ..|.|.+++.+.....  ......|+|+|||.+++|||||+....     ..|||+|+|.+|+|++.+++|++..++. +
T Consensus        39 ~~f~g~~~~~~~~~~~--~~~~~~i~~~FrT~~~~GlL~~~~~~~-----~~~fi~l~l~~G~l~~~~~~g~~~~~~~-~  110 (191)
T d1h30a1          39 RMFSGTPVIRLRFKRL--QPTRLVAEFDFRTFDPEGILLFAGGHQ-----DSTWIVLALRAGRLELQLRYNGVGRVTS-S  110 (191)
T ss_dssp             C-----CCEEEECCBS--SCCCCEEEEEEEECCSSEEEEEEESCT-----TSEEEEEEEETTEEEEEEEETTEEEEEE-E
T ss_pred             cccCCCceEEEEeccC--CCCceEEEEEEEeCCCCeEEEEEcCCC-----CCcEEEEEEECCEEEEEEEcCCCcEEec-C
Confidence            4577755444322211  135689999999999999999987542     3689999999999999999999888777 7


Q ss_pred             CceecCCCcEEEEEEEECCEEEEEEcCeeeecccCCCCcc---ceecCCceEEcCcCCCCCCCCCccCCCceEEEEEEEE
Q psy9228         734 KKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQD---VINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNIHI  810 (834)
Q Consensus       734 ~~~~nDg~wH~V~i~r~~~~~~l~VD~~~~~~~~~~~~~~---~l~~~~~lyiGG~p~~~~~~~~~~~~~F~GCi~~v~i  810 (834)
                      ..+|+||+||+|.|.|.++.++|.||+........++...   .+...++|||||+|............+|+||||++.+
T Consensus       111 ~~~v~Dg~WH~V~v~r~~~~~~l~VD~~~~~~~~~~~~~~~~~~~~~~~~lyiGG~p~~~~~~~~~~~~~F~GCir~~n~  190 (191)
T d1h30a1         111 GPVINHGMWQTISVEELARNLVIKVNRDAVMKIAVAGDLFQPERGLYHLNLTVGGIPFHEKDLVQPINPRLDGCMRSWNW  190 (191)
T ss_dssp             EEECCSSCCEEEEEEECSSEEEEEETTEEEEEEECCSCSSEEETTEEECEEEESSCSSCGGGSSSCCCCCCCEEEEEEEE
T ss_pred             CccccCCCEEEEEEEEeCCEEEEEECCcceEEEEccCccccccccccCceEEEEeecCccccccccCCCCCEEeecccCc
Confidence            7899999999999999999999999998766554444322   3344578999999987544444566789999999764

>d1dyka2 b.29.1.4 (A:2933-3117) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Laminin alpha2 chain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=2e-25  Score=216.07  Aligned_cols=155  Identities=18%  Similarity=0.214  Sum_probs=126.6

Q ss_pred             eeeEEcCCceeeechhhhhhccCcceEEEEEEeCCCCeeEEecCCCCCCCCCCcceEEEEEECCEEEEEEEcCCcEEEEE
Q psy9228         652 SEVHFLGEGYVELKKELIEERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIK  731 (834)
Q Consensus       652 ~~~~F~g~s~~~~~~~~~~~~~~~~~i~~~frT~~~~GlLl~~~~~~~~~~~~~~~~~l~l~~G~l~~~~~~g~~~~~l~  731 (834)
                      .+..|+|+||+++.....  ......|+|+|||++++|+|||+...      ..|||+|+|.||+|++.+++|++...+.
T Consensus         4 ~G~~F~G~~y~~~~~~~~--~~~~~~is~~frT~~~~GlLl~~~~~------~~d~~~l~l~~G~l~~~~~~g~~~~~~~   75 (185)
T d1dyka2           4 SGTYFDGTGFAKAVGGFK--VGLDLLVEFEFRTTRPTGVLLGVSSQ------KMDGMGIEMIDEKLMFHVDNGAGRFTAI   75 (185)
T ss_dssp             ESEEEEEEEEEECCSSBC--CBSEEEEEEEEEESCSCEEEEEEECS------SSCEEEEEEETTEEEEEEESSSCCEEEE
T ss_pred             cceEECCCceEEEcCCCC--CCceEEEEEEEEECCCCEEEEEeCCC------CCceEEEEEECCeEEEEEECCCCeEEEE
Confidence            567899999999864321  23567899999999999999998653      2589999999999999999998865433


Q ss_pred             ---eCCceecCCCcEEEEEEEECCEEEEEEcCeeeecccCCCCccceecCCceEEcCcCCCCCCCCCccCCCceEEEEEE
Q psy9228         732 ---FSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNI  808 (834)
Q Consensus       732 ---~s~~~~nDg~wH~V~i~r~~~~~~l~VD~~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~~~~~~~~~~~F~GCi~~v  808 (834)
                         ....+++||+||+|.|.|.++.++|.||+.........+....++...++||||+|............+|.|||++|
T Consensus        76 ~~~~~~~~l~Dg~WH~V~i~~~~~~~~l~vD~~~~~~~~~~~~~~~~~~~~~lyiGG~p~~~~~~~~~~~~~F~GCi~~v  155 (185)
T d1dyka2          76 YDAEIPGHMCNGQWHKVTAKKIKNRLELVVDGNQVDAQSPNSASTSADTNDPVFVGGFPGGLNQFGLTTNIRFRGCIRSL  155 (185)
T ss_dssp             ECCCSTTSTTSSSCEEEEEEEETTEEEEEETTEEEEEECCCTTCCCBCCCBCCEESCCCTTCCCTTCSCCCCCEEEEEEE
T ss_pred             EEccCCceecCCCEEEEEEEEcCCEEEEEEeecceeEEeCCCCcceeecCCCEEEeCccccccccCccCCCCcEEEeeEE
Confidence               13458999999999999999999999999887776655556667777889999999875444445667999999999


Q ss_pred             EECCce
Q psy9228         809 HIQNKH  814 (834)
Q Consensus       809 ~in~~~  814 (834)
                      +||+..
T Consensus       156 ~in~~~  161 (185)
T d1dyka2         156 KLTKGT  161 (185)
T ss_dssp             EEECTT
T ss_pred             EECCcc
Confidence            999864

>d2r1da1 b.29.1.4 (A:36-212) Ligand-binding domain of neurexin 1beta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Ligand-binding domain of neurexin 1beta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=1.3e-24  Score=208.78  Aligned_cols=156  Identities=22%  Similarity=0.323  Sum_probs=123.7

Q ss_pred             eeEEc-CCceeeechhhh-hhccCcceEEEEEEeCCCCeeEEecCCCCCCCCCCcceEEEEEECCEEEEEEEcCCcEEEE
Q psy9228         653 EVHFL-GEGYVELKKELI-EERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTI  730 (834)
Q Consensus       653 ~~~F~-g~s~~~~~~~~~-~~~~~~~~i~~~frT~~~~GlLl~~~~~~~~~~~~~~~~~l~l~~G~l~~~~~~g~~~~~l  730 (834)
                      .+.|. |+||+.|...+. ........|+|+|||..++|+|||+....    ...+|++|.|.||+|++.++.|++...+
T Consensus         5 t~~F~~g~~~i~y~~~~~~~~~~~~~~is~~FrT~~~~G~Ll~~~~~~----~~~~~l~l~l~~G~l~~~~~~g~~~~~~   80 (177)
T d2r1da1           5 TYIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSS----GLGDYLELHIHQGKIGVKFNVGTDDIAI   80 (177)
T ss_dssp             EEEEEEEEEEEEEECCGGGCCCBSEEEEEEEEECCCSSEEEEEEEECT----TCCCEEEEEEETTEEEEEEESSSCEEEE
T ss_pred             cEEeCCCCeEEEEECCCccCCCccccEEEEEEEeCCCCEEEEEEcCCC----CCCcEEEEEEECCEEEEEEcCCCceEEE
Confidence            46675 689999852221 12235678999999999999999986532    2368999999999999999999887766


Q ss_pred             EeCCceecCCCcEEEEEEEECCEEEEEEcCeeeecccCC-CCccceecCCceEEcCcCCCCCCCCCccCCCceEEEEEEE
Q psy9228         731 KFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESP-GSQDVINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNIH  809 (834)
Q Consensus       731 ~~s~~~~nDg~wH~V~i~r~~~~~~l~VD~~~~~~~~~~-~~~~~l~~~~~lyiGG~p~~~~~~~~~~~~~F~GCi~~v~  809 (834)
                      ..+..++|||+||+|.|.|.++.++|+||+......... .....++...+|||||.|..         .+|+|||++|+
T Consensus        81 ~~~~~~vnDg~WH~V~v~~~~~~~~L~VD~~~~~~~~~~~~~~~~~~~~~~l~iGG~p~~---------~~F~GCi~~v~  151 (177)
T d2r1da1          81 EESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKEQG---------QPFQGQLSGLY  151 (177)
T ss_dssp             ECCSSCCCSSSCEEEEEEEETTEEEEEETTSCCEEECCSSCCCCCBCSEEEEEESSTTTT---------CCCCEEEEEEE
T ss_pred             EeCCceecCCCEEEEEEEEECCEEEEEECCeeeEEEecccCccccccccceEEEccCCCC---------CCCEEEEEEEE
Confidence            657889999999999999999999999999765544332 23345666678999998854         57999999999


Q ss_pred             ECCceecccCCC
Q psy9228         810 IQNKHISNIGSS  821 (834)
Q Consensus       810 in~~~~~~l~~~  821 (834)
                      +|+.++++|...
T Consensus       152 ~Ng~~~l~la~~  163 (177)
T d2r1da1         152 YNGLKVLNMAAE  163 (177)
T ss_dssp             ETTBCHHHHHHT
T ss_pred             ECCEEHHHHHhc
Confidence            999878887764

>d1d2sa_ b.29.1.4 (A:) Sex hormone-binding globulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Sex hormone-binding globulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=9e-24  Score=200.70  Aligned_cols=155  Identities=16%  Similarity=0.126  Sum_probs=123.8

Q ss_pred             ceeeechhhhhhccCcceEEEEEEeCCCCeeEEecCCCCCCCCCCcceEEEEEECCEEEEEEEcCCcEEEEEeCCceecC
Q psy9228         660 GYVELKKELIEERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVTIKFSKKPVND  739 (834)
Q Consensus       660 s~~~~~~~~~~~~~~~~~i~~~frT~~~~GlLl~~~~~~~~~~~~~~~~~l~l~~G~l~~~~~~g~~~~~l~~s~~~~nD  739 (834)
                      +|+.|+...    .....|+|+|||.+++|+|||+....     ..+||+|+|.||+|++.+++|++...+. +..+++|
T Consensus        16 ~~~~~~~~~----~~~~~isf~FrT~~~~GlL~~~~~~~-----~~~fi~L~L~~G~l~~~~~~g~~~~~~~-s~~~~~d   85 (170)
T d1d2sa_          16 AVMTFDLTK----ITKTSSSFEVRTWDPEGVIFYGDTNP-----KDDWFMLGLRDGRPEIQLHNHWAQLTVG-AGPRLDD   85 (170)
T ss_dssp             EEEEEEGGG----CCCCEEEEEEEESCSSEEEEEEEEET-----TTEEEEEEEETTEEEEEEESSSCEEEEE-CSCCCCS
T ss_pred             EEEEEeccC----CceeEEEEEEEECCCCEEEEEEcCCC-----CCcEEEEEEECCEEEEEEeCCCcceEEe-cccccCC
Confidence            466665332    36789999999999999999986543     3689999999999999999999988887 7889999


Q ss_pred             CCcEEEEEEEECCEEEEEEcCeeeecccCCCCccceecCCceEEcCcCCCCCCCCCccCCCceEEEEEEEECCceecccC
Q psy9228         740 GIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNIHIQNKHISNIG  819 (834)
Q Consensus       740 g~wH~V~i~r~~~~~~l~VD~~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~~~~~~~~~~~F~GCi~~v~in~~~~~~l~  819 (834)
                      |+||+|.|.|.++.++|+||+..........    ......|||||+|............+|+||||+++++++. .+|.
T Consensus        86 g~WH~V~i~~~~~~~~L~VD~~~~~~~~~~~----~~~~~~lyiGG~p~~~~~~~~~~~~~F~GCir~~~~~~~~-~~l~  160 (170)
T d1d2sa_          86 GRWHQVEVKMEGDSVLLEVDGEEVLRLRQVS----GHPIMRIALGGLLFPASNLRLPLVPALDGCLRRDSWLDKQ-AEIS  160 (170)
T ss_dssp             SSCEEEEEEEETTEEEEEETTEEEEEETTCC----CCCEEEEEESSCSSCGGGSSSCCCCCCCEEEEEEEESCGG-GEEE
T ss_pred             CceEEEEEEEECCEEEEEECCeeeEeeecCC----CccCCeEEEccccCccccccCcCCCCeEEEECcCEeCCeE-eeee
Confidence            9999999999999999999998876544332    3334579999999775444445677999999999999974 4554


Q ss_pred             CCCCCCcccccc
Q psy9228         820 SSASSGLHVMPW  831 (834)
Q Consensus       820 ~~a~~~~nv~~c  831 (834)
                      ..  ...++++|
T Consensus       161 ~~--~~~~~~~C  170 (170)
T d1d2sa_         161 AS--APTSLRSC  170 (170)
T ss_dssp             EE--CSSCCCBC
T ss_pred             cc--CCCCCCCC
Confidence            42  45667766

>d1dyka1 b.29.1.4 (A:2744-2932) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Laminin alpha2 chain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=1.7e-22  Score=195.68  Aligned_cols=170  Identities=22%  Similarity=0.390  Sum_probs=133.7

Q ss_pred             cccccCCCcccccccCCcc-ccceeEEEEEEEeeCCCCeeEEEeccCCccccCCCCCeEEEEEECcEEEEEEecc--cEE
Q psy9228         383 SVPLFTQKPLSYLALPTLT-DAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVG--LVV  459 (834)
Q Consensus       383 ~~~~f~~~~~s~l~~~~~~-~~~~~~~i~~~frt~~~~GlLl~~~~~~~~~~~~~~d~~~l~L~~G~l~~~~~~G--~~~  459 (834)
                      ....|+.+..||+.++... .....++|+|+|||.+++|+|||.++.      ...||++|+|.+|++++++++|  ...
T Consensus        15 ~~~~fg~s~~s~~~~~~~~~~~~~~~~i~~~frT~~~~GlL~~~~~~------~~~dfi~l~l~~G~l~~~~~~g~~~~~   88 (189)
T d1dyka1          15 GSKQFGLSRNSHIAIAFDDTKVKNRLTIELEVRTEAESGLLFYMARI------NHADFATVQLRNGFPYFSYDLGSGDTS   88 (189)
T ss_dssp             TCEECCSSTTCEEEEECCGGGGSSEEEEEEEEEECCSCEEEEEEECT------TSSSEEEEEEETTEEEEEEESSSCEEE
T ss_pred             CceecCCCCCceEEEecCcccccccEEEEEEEEECCCCEEEEEEcCC------CCCcEEEEEEECCEEEEEEECCCccEE
Confidence            3445667778998887443 345679999999999999999998753      4678999999999999999997  466


Q ss_pred             EEeeeeecCCCeEEEEEEEECCeEEEEECCeeeeeeecCCCccccccCCCceeeccccCCCcccCcCcccccCceeEEee
Q psy9228         460 LRSKVTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCIST  539 (834)
Q Consensus       460 i~s~~~~~dg~wH~V~v~~~~~~~~l~VD~~~~~~~~~~g~~~~~l~~~~~l~iGG~~~~~~~~~~~~~~~~gF~GCi~~  539 (834)
                      +.+...++||+||+|.+.|.++.++|.||+..... ..++. ...++....+||||+|.... .........+|.|||++
T Consensus        89 ~~~~~~v~Dg~WH~V~v~~~~~~~~l~VD~~~~~~-~~~~~-~~~l~~~~~lyiGG~p~~~~-~~~~~~~~~~F~GCi~~  165 (189)
T d1dyka1          89 TMIPTKINDGQWHKIKIVRVKQEGILYVDDASSQT-ISPKK-ADILDVVGILYVGGLPINYT-TRRIGPVTYSLDGCVRN  165 (189)
T ss_dssp             EECCSCCCSSSCEEEEEEEETTEEEEEETTEEEEE-ECSTT-CCCCCCCSEEEESSCCTTCC-CCSSCSCCSBCSEEEEE
T ss_pred             ecCCcEeeCCCEEEEEEEEcccEEEEEECCcceee-EccCc-ccccccccceEEeccccccc-ccccCcCCCCcEEEEeE
Confidence            67788999999999999999999999999987554 33444 56778888999999987432 22223445789999999


Q ss_pred             eEEcCeeeeecccccccCCcccC
Q psy9228         540 IDVLGSELDLINSAVDSANIMDC  562 (834)
Q Consensus       540 v~ing~~~~~~~~~~~~~~~~~C  562 (834)
                      |.||++.+++.+. ....++..|
T Consensus       166 v~in~~~~~L~~~-~~~~~V~~C  187 (189)
T d1dyka1         166 LHMEQAPVDLDQP-TSSFHVGTC  187 (189)
T ss_dssp             EEESSSCCCTTSC-SEEESCBCC
T ss_pred             EEECCEEecCCCc-ccCCCccCc
Confidence            9999999998654 334445444

>d1pz7a_ b.29.1.4 (A:) Agrin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Agrin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.87  E-value=2.1e-21  Score=188.83  Aligned_cols=152  Identities=32%  Similarity=0.595  Sum_probs=127.7

Q ss_pred             eeEEEEEEEeeCCCCeeEEEeccCCccccCCCCCeEEEEEECcEEEEEEecc--cEEEEeeeeecCCCeEEEEEEEECCe
Q psy9228         405 LHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVG--LVVLRSKVTLVPHEWVVVTIIKDFKE  482 (834)
Q Consensus       405 ~~~~i~~~frt~~~~GlLl~~~~~~~~~~~~~~d~~~l~L~~G~l~~~~~~G--~~~i~s~~~~~dg~wH~V~v~~~~~~  482 (834)
                      ...+++|+|||.+++|+|||.+..     ....||++|+|.+|++++.+++|  ...+.+..+++||+||+|.+.|.++.
T Consensus        42 ~~~~i~l~frT~~~~GlLly~~~~-----~~~~df~~l~L~~G~l~~~~~~g~~~~~~~~~~~v~dg~wh~V~i~r~~~~  116 (195)
T d1pz7a_          42 QSNHFELSIKTEATQGLILWSGKG-----LERSDYIALAIVDGFVQMMYDLGSKPVVLRSTVPINTNHWTHIKAYRVQRE  116 (195)
T ss_dssp             SEEEEEEEEEECCSSEEEEEESCC-----STTCCEEEEEEETTEEEEEEESSSCCEEEEEEEECCSSSCEEEEEEEETTE
T ss_pred             ceeEEEEEEEeCCCCEEEEEEcCC-----CCCCCEEEEEEECCEEEEEEEcCCCCEEEeCCceecCCCEEEEEEEEcCcE
Confidence            457899999999999999998754     34678999999999999999987  46677888999999999999999999


Q ss_pred             EEEEECCeeeeeeecCCCccccccCCCceeeccccCCCcccCcCcccccCceeEEeeeEEcCeeeeecccccccCCcccC
Q psy9228         483 GKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLINSAVDSANIMDC  562 (834)
Q Consensus       483 ~~l~VD~~~~~~~~~~g~~~~~l~~~~~l~iGG~~~~~~~~~~~~~~~~gF~GCi~~v~ing~~~~~~~~~~~~~~~~~C  562 (834)
                      ++|.||+........++. ...++...++||||+|..............+|.|||++|.||++.+++.+......++.+|
T Consensus       117 ~~l~VD~~~~~~~~~~~~-~~~l~~~~~lyiGG~p~~~~~~~~~~~~~~~F~GCI~~l~in~~~l~l~~~~~~~~~v~~C  195 (195)
T d1pz7a_         117 GSLQVGNEAPITGSSPLG-ATQLDTDGALWLGGMERLSVAHKLPKAYSTGFIGCIRDVIVDRQELHLVEDALNNPTILHC  195 (195)
T ss_dssp             EEEEETTSCCEEEECCSS-CCCEEECCEEEESSCSCCSTTTTSCGGGGSBCEEEEEEEEETTEECCTTTSCSSCCCCCBC
T ss_pred             EEEEEeccceeeeeCCCC-ceeeecCCceEEcccccccccccccccCcCCCEEEEEEEEECCEECCCchHhhcCCCCCCC
Confidence            999999987777666666 6778888999999998754333333445679999999999999999998877777676665

>d1h30a2 b.29.1.4 (A:461-678) Growth-arrest-specific protein Gas6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Growth-arrest-specific protein Gas6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2.2e-21  Score=192.83  Aligned_cols=169  Identities=17%  Similarity=0.211  Sum_probs=112.2

Q ss_pred             eeeEEcCCceeeechhhhh-------hccCcceEEEEEEeCCCCeeEEecCCCCCCCCCCcceEEEEEECCEEEEEEEcC
Q psy9228         652 SEVHFLGEGYVELKKELIE-------ERRNEETIAFDFVTDDKNALLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLG  724 (834)
Q Consensus       652 ~~~~F~g~s~~~~~~~~~~-------~~~~~~~i~~~frT~~~~GlLl~~~~~~~~~~~~~~~~~l~l~~G~l~~~~~~g  724 (834)
                      .+..|.|.||+.|+.....       .......|+|+|||.+++|||||++....    ...++++.+.++++.+.+  +
T Consensus        16 ~G~~F~G~g~~~~~~~~~~~~~~~~~~~~~~~~isl~frT~~~~GlLl~~~~~~~----~~~~l~~~~~~~~~~~~~--g   89 (218)
T d1h30a2          16 RGSFYPGSGFAFYSLDYMRTPLDVGTESTWEVEVVAHIRPAADTGVLFALWAPDL----RAVPLSVALVDYHSTKKL--K   89 (218)
T ss_dssp             SSEEECSSCCEEECCCCBC--------CCBCEEEEEEEEESSSCEEEEEEEEGGG----TEEEEEEEEESCC-------C
T ss_pred             cccEeCCCEEEEEeccccccccccccccceeEEEEEEEEcCCCCcEEEEEecCCC----ceEEEEEEeeEEEEEEcc--C
Confidence            4568999999998633211       11235679999999999999999875431    123345555566655544  4


Q ss_pred             CcEEE-------EEeCCceecCCCcEEEEEEEECCEEEEEEcCeeeecccCCCCc--------cceecCCceEEcCcCCC
Q psy9228         725 DGVVT-------IKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQ--------DVINTRGNIYLGGTPNM  789 (834)
Q Consensus       725 ~~~~~-------l~~s~~~~nDg~wH~V~i~r~~~~~~l~VD~~~~~~~~~~~~~--------~~l~~~~~lyiGG~p~~  789 (834)
                      .+...       +..+..+||||+||+|+|.|.++.++|+||+........+...        ..++...++||||+|+.
T Consensus        90 ~~~~~~~~~~~~~~~~~~~lnDg~WH~V~v~~~~~~~~L~VD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lyvGG~P~~  169 (218)
T d1h30a2          90 KQLVVLAVEHTALALMEIKVCDGQEHVVTVSLRDGEATLEVDGTRGQSEVSAAQLQERLAVLERHLRSPVLTFAGGLPDV  169 (218)
T ss_dssp             CCEEEEEETTEEEEEEECCTTSSCCEEEEEEEETTEEEEEETTEECEESSCHHHHHHHHHHHHHHHTSCCEEEESCCCSC
T ss_pred             cceEEeccCceEEeccccccCCCCeEEEEEEEECCEEEEEEecccceeeeccccccccccccceecccCceeeccCCCCc
Confidence            33322       2224567999999999999999999999999876654332211        12345578999999975


Q ss_pred             CCCCCCccCCCceEEEEEEEECCceecccCCCCCCCcccc
Q psy9228         790 DLMTGGRYVHPMSGLMMNIHIQNKHISNIGSSASSGLHVM  829 (834)
Q Consensus       790 ~~~~~~~~~~~F~GCi~~v~in~~~~~~l~~~a~~~~nv~  829 (834)
                      . ........+|+||| +|+||++ .++|..+....-+|.
T Consensus       170 ~-~~~~~~~~~F~GCi-~l~in~~-~~dl~~~~~~~~~v~  206 (218)
T d1h30a2         170 P-VTSAPVTAFYRGCM-TLEVNRR-LLDLDEAAYKHSDIT  206 (218)
T ss_dssp             C-TTSSSCCSBCCEEE-EEEETTE-ECCGGGSSEECTTSB
T ss_pred             c-ccccccCCCeeeeE-EEEECCE-EeccchhhhhcCCee
Confidence            3 22334567899999 8999997 568877654444454

>d1d2sa_ b.29.1.4 (A:) Sex hormone-binding globulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Sex hormone-binding globulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=8.7e-20  Score=172.86  Aligned_cols=150  Identities=19%  Similarity=0.283  Sum_probs=118.5

Q ss_pred             CCCcccccccCCccccceeEEEEEEEeeCCCCeeEEEeccCCccccCCCCCeEEEEEECcEEEEEEecc--cEEEEeeee
Q psy9228         388 TQKPLSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVG--LVVLRSKVT  465 (834)
Q Consensus       388 ~~~~~s~l~~~~~~~~~~~~~i~~~frt~~~~GlLl~~~~~~~~~~~~~~d~~~l~L~~G~l~~~~~~G--~~~i~s~~~  465 (834)
                      +..+.+|+.++....  ...+|+|+|||.+++|+|||...      ....+|++|+|.+|+++++++.|  ...+.+...
T Consensus        11 g~~~~~~~~~~~~~~--~~~~isf~FrT~~~~GlL~~~~~------~~~~~fi~L~L~~G~l~~~~~~g~~~~~~~s~~~   82 (170)
T d1d2sa_          11 GQEPIAVMTFDLTKI--TKTSSSFEVRTWDPEGVIFYGDT------NPKDDWFMLGLRDGRPEIQLHNHWAQLTVGAGPR   82 (170)
T ss_dssp             CCSCSEEEEEEGGGC--CCCEEEEEEEESCSSEEEEEEEE------ETTTEEEEEEEETTEEEEEEESSSCEEEEECSCC
T ss_pred             CCCCeEEEEEeccCC--ceeEEEEEEEECCCCEEEEEEcC------CCCCcEEEEEEECCEEEEEEeCCCcceEEecccc
Confidence            345667888775443  45789999999999999999865      24578999999999999999997  466778889


Q ss_pred             ecCCCeEEEEEEEECCeEEEEECCeeeeeeecCCCccccccCCCceeeccccCCCcccCcCcccccCceeEEeeeEEcCe
Q psy9228         466 LVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGS  545 (834)
Q Consensus       466 ~~dg~wH~V~v~~~~~~~~l~VD~~~~~~~~~~g~~~~~l~~~~~l~iGG~~~~~~~~~~~~~~~~gF~GCi~~v~ing~  545 (834)
                      ++||+||.|.+.+..+.++|.||+.........     .......+||||+|.....  .......+|.||||++.+++.
T Consensus        83 ~~dg~WH~V~i~~~~~~~~L~VD~~~~~~~~~~-----~~~~~~~lyiGG~p~~~~~--~~~~~~~~F~GCir~~~~~~~  155 (170)
T d1d2sa_          83 LDDGRWHQVEVKMEGDSVLLEVDGEEVLRLRQV-----SGHPIMRIALGGLLFPASN--LRLPLVPALDGCLRRDSWLDK  155 (170)
T ss_dssp             CCSSSCEEEEEEEETTEEEEEETTEEEEEETTC-----CCCCEEEEEESSCSSCGGG--SSSCCCCCCCEEEEEEEESCG
T ss_pred             cCCCceEEEEEEEECCEEEEEECCeeeEeeecC-----CCccCCeEEEccccCcccc--ccCcCCCCeEEEECcCEeCCe
Confidence            999999999999999999999999876553332     2344557999999975321  223345799999999999999


Q ss_pred             eeeeccc
Q psy9228         546 ELDLINS  552 (834)
Q Consensus       546 ~~~~~~~  552 (834)
                      +.++...
T Consensus       156 ~~~l~~~  162 (170)
T d1d2sa_         156 QAEISAS  162 (170)
T ss_dssp             GGEEEEE
T ss_pred             Eeeeecc
Confidence            8877543

>d1dyka2 b.29.1.4 (A:2933-3117) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Laminin alpha2 chain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=2.1e-19  Score=173.15  Aligned_cols=146  Identities=18%  Similarity=0.243  Sum_probs=116.4

Q ss_pred             ccccccCCccccceeEEEEEEEeeCCCCeeEEEeccCCccccCCCCCeEEEEEECcEEEEEEeccc--EEE--E--eeee
Q psy9228         392 LSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVGL--VVL--R--SKVT  465 (834)
Q Consensus       392 ~s~l~~~~~~~~~~~~~i~~~frt~~~~GlLl~~~~~~~~~~~~~~d~~~l~L~~G~l~~~~~~G~--~~i--~--s~~~  465 (834)
                      .+|+.++........+.|+|+|||.+++|+|||..+       ...||++|+|.+|++.+++++|.  ...  .  ....
T Consensus        11 ~~y~~~~~~~~~~~~~~is~~frT~~~~GlLl~~~~-------~~~d~~~l~l~~G~l~~~~~~g~~~~~~~~~~~~~~~   83 (185)
T d1dyka2          11 TGFAKAVGGFKVGLDLLVEFEFRTTRPTGVLLGVSS-------QKMDGMGIEMIDEKLMFHVDNGAGRFTAIYDAEIPGH   83 (185)
T ss_dssp             EEEEECCSSBCCBSEEEEEEEEEESCSCEEEEEEEC-------SSSCEEEEEEETTEEEEEEESSSCCEEEEECCCSTTS
T ss_pred             CceEEEcCCCCCCceEEEEEEEEECCCCEEEEEeCC-------CCCceEEEEEECCeEEEEEECCCCeEEEEEEccCCce
Confidence            478888765555667899999999999999999854       24789999999999999999873  222  1  3457


Q ss_pred             ecCCCeEEEEEEEECCeEEEEECCeeeeeeecCCCccccccCCCceeeccccCCCcccCcCcccccCceeEEeeeEEcCe
Q psy9228         466 LVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGS  545 (834)
Q Consensus       466 ~~dg~wH~V~v~~~~~~~~l~VD~~~~~~~~~~g~~~~~l~~~~~l~iGG~~~~~~~~~~~~~~~~gF~GCi~~v~ing~  545 (834)
                      ++||+||+|.+.|..+.++|.||+.........+. ...++...++||||+|....  ........+|.|||++|.+|+.
T Consensus        84 l~Dg~WH~V~i~~~~~~~~l~vD~~~~~~~~~~~~-~~~~~~~~~lyiGG~p~~~~--~~~~~~~~~F~GCi~~v~in~~  160 (185)
T d1dyka2          84 MCNGQWHKVTAKKIKNRLELVVDGNQVDAQSPNSA-STSADTNDPVFVGGFPGGLN--QFGLTTNIRFRGCIRSLKLTKG  160 (185)
T ss_dssp             TTSSSCEEEEEEEETTEEEEEETTEEEEEECCCTT-CCCBCCCBCCEESCCCTTCC--CTTCSCCCCCEEEEEEEEEECT
T ss_pred             ecCCCEEEEEEEEcCCEEEEEEeecceeEEeCCCC-cceeecCCCEEEeCcccccc--ccCccCCCCcEEEeeEEEECCc
Confidence            99999999999999999999999987766555554 56677788899999998532  1223445799999999999986


Q ss_pred             ee
Q psy9228         546 EL  547 (834)
Q Consensus       546 ~~  547 (834)
                      ..
T Consensus       161 ~~  162 (185)
T d1dyka2         161 TG  162 (185)
T ss_dssp             TS
T ss_pred             cC
Confidence            54

>d2r1da1 b.29.1.4 (A:36-212) Ligand-binding domain of neurexin 1beta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Ligand-binding domain of neurexin 1beta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.80  E-value=1.7e-19  Score=172.56  Aligned_cols=146  Identities=19%  Similarity=0.347  Sum_probs=113.2

Q ss_pred             Cccccccc--CCc-cccceeEEEEEEEeeCCCCeeEEEeccCCccccCCCCCeEEEEEECcEEEEEEeccc--E-EEEee
Q psy9228         390 KPLSYLAL--PTL-TDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVGL--V-VLRSK  463 (834)
Q Consensus       390 ~~~s~l~~--~~~-~~~~~~~~i~~~frt~~~~GlLl~~~~~~~~~~~~~~d~~~l~L~~G~l~~~~~~G~--~-~i~s~  463 (834)
                      ...+|+.+  |.. ........|+|+|||.+++|+|||....     ....+|++|.|.+|++++.++.|.  . .+.+.
T Consensus        10 ~g~~~i~y~~~~~~~~~~~~~~is~~FrT~~~~G~Ll~~~~~-----~~~~~~l~l~l~~G~l~~~~~~g~~~~~~~~~~   84 (177)
T d2r1da1          10 KGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSS-----SGLGDYLELHIHQGKIGVKFNVGTDDIAIEESN   84 (177)
T ss_dssp             EEEEEEEEECCGGGCCCBSEEEEEEEEECCCSSEEEEEEEEC-----TTCCCEEEEEEETTEEEEEEESSSCEEEEECCS
T ss_pred             CCCeEEEEECCCccCCCccccEEEEEEEeCCCCEEEEEEcCC-----CCCCcEEEEEEECCEEEEEEcCCCceEEEEeCC
Confidence            34566654  333 2334567899999999999999998653     345799999999999999999973  3 34467


Q ss_pred             eeecCCCeEEEEEEEECCeEEEEECCeeeeeeecCCCccccccCCCceeeccccCCCcccCcCcccccCceeEEeeeEEc
Q psy9228         464 VTLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVL  543 (834)
Q Consensus       464 ~~~~dg~wH~V~v~~~~~~~~l~VD~~~~~~~~~~g~~~~~l~~~~~l~iGG~~~~~~~~~~~~~~~~gF~GCi~~v~in  543 (834)
                      ..++||+||+|.+.+..+.++|.||+........+......++...++||||.|.           ..+|.|||++|.+|
T Consensus        85 ~~vnDg~WH~V~v~~~~~~~~L~VD~~~~~~~~~~~~~~~~~~~~~~l~iGG~p~-----------~~~F~GCi~~v~~N  153 (177)
T d2r1da1          85 AIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQLTIFNSQATIIIGGKEQ-----------GQPFQGQLSGLYYN  153 (177)
T ss_dssp             SCCCSSSCEEEEEEEETTEEEEEETTSCCEEECCSSCCCCCBCSEEEEEESSTTT-----------TCCCCEEEEEEEET
T ss_pred             ceecCCCEEEEEEEEECCEEEEEECCeeeEEEecccCccccccccceEEEccCCC-----------CCCCEEEEEEEEEC
Confidence            7899999999999999999999999976655443332245566777899999886           35899999999999


Q ss_pred             Cee-eeecc
Q psy9228         544 GSE-LDLIN  551 (834)
Q Consensus       544 g~~-~~~~~  551 (834)
                      +.. ++++.
T Consensus       154 g~~~l~la~  162 (177)
T d2r1da1         154 GLKVLNMAA  162 (177)
T ss_dssp             TBCHHHHHH
T ss_pred             CEEHHHHHh
Confidence            954 55553

>d1h30a1 b.29.1.4 (A:261-451) Growth-arrest-specific protein Gas6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Growth-arrest-specific protein Gas6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=2.5e-18  Score=166.50  Aligned_cols=145  Identities=15%  Similarity=0.294  Sum_probs=110.2

Q ss_pred             cCCCcccccccCCccccceeEEEEEEEeeCCCCeeEEEeccCCccccCCCCCeEEEEEECcEEEEEEecc--cEEEEeee
Q psy9228         387 FTQKPLSYLALPTLTDAHLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVG--LVVLRSKV  464 (834)
Q Consensus       387 f~~~~~s~l~~~~~~~~~~~~~i~~~frt~~~~GlLl~~~~~~~~~~~~~~d~~~l~L~~G~l~~~~~~G--~~~i~s~~  464 (834)
                      |.+.+.+|+.++....  ..++|+|+|||.+++|+|||..+.      ...||++|+|.+|++++.++.|  ...+.+..
T Consensus        41 f~g~~~~~~~~~~~~~--~~~~i~~~FrT~~~~GlL~~~~~~------~~~~fi~l~l~~G~l~~~~~~g~~~~~~~~~~  112 (191)
T d1h30a1          41 FSGTPVIRLRFKRLQP--TRLVAEFDFRTFDPEGILLFAGGH------QDSTWIVLALRAGRLELQLRYNGVGRVTSSGP  112 (191)
T ss_dssp             ----CCEEEECCBSSC--CCCEEEEEEEECCSSEEEEEEESC------TTSEEEEEEEETTEEEEEEEETTEEEEEEEEE
T ss_pred             cCCCceEEEEeccCCC--CceEEEEEEEeCCCCeEEEEEcCC------CCCcEEEEEEECCEEEEEEEcCCCcEEecCCc
Confidence            4445556776665443  347899999999999999998752      3578999999999999999987  46677888


Q ss_pred             eecCCCeEEEEEEEECCeEEEEECCeeeeeeecCCCc--cccccCCCceeeccccCCCcccCcCcccccCceeEEeeeE
Q psy9228         465 TLVPHEWVVVTIIKDFKEGKLSVGGEPLIVGSTPGEK--LQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTID  541 (834)
Q Consensus       465 ~~~dg~wH~V~v~~~~~~~~l~VD~~~~~~~~~~g~~--~~~l~~~~~l~iGG~~~~~~~~~~~~~~~~gF~GCi~~v~  541 (834)
                      .++||+||+|.+.|..+.+.|.||+........++..  ...+....++||||+|.....  .......+|.|||+++.
T Consensus       113 ~v~Dg~WH~V~v~r~~~~~~l~VD~~~~~~~~~~~~~~~~~~~~~~~~lyiGG~p~~~~~--~~~~~~~~F~GCir~~n  189 (191)
T d1h30a1         113 VINHGMWQTISVEELARNLVIKVNRDAVMKIAVAGDLFQPERGLYHLNLTVGGIPFHEKD--LVQPINPRLDGCMRSWN  189 (191)
T ss_dssp             ECCSSCCEEEEEEECSSEEEEEETTEEEEEEECCSCSSEEETTEEECEEEESSCSSCGGG--SSSCCCCCCCEEEEEEE
T ss_pred             cccCCCEEEEEEEEeCCEEEEEECCcceEEEEccCccccccccccCceEEEEeecCcccc--ccccCCCCCEEeecccC
Confidence            9999999999999999999999999877665555431  123445678999999875322  22344578999999865

>d1h30a2 b.29.1.4 (A:461-678) Growth-arrest-specific protein Gas6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Growth-arrest-specific protein Gas6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.1e-16  Score=158.39  Aligned_cols=152  Identities=20%  Similarity=0.214  Sum_probs=103.8

Q ss_pred             ceeEEEEEEEeeCCCCeeEEEeccCCccccCCCCCeEEEEEECcEEEEEEeccc--------EEEEeeeeecCCCeEEEE
Q psy9228         404 HLHFSIELSFKPTDYNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVGL--------VVLRSKVTLVPHEWVVVT  475 (834)
Q Consensus       404 ~~~~~i~~~frt~~~~GlLl~~~~~~~~~~~~~~d~~~l~L~~G~l~~~~~~G~--------~~i~s~~~~~dg~wH~V~  475 (834)
                      ...++|+|+|||..++|||||.+...     ....++.+.+.++++.+.+..+.        ........++||+||+|+
T Consensus        44 ~~~~~isl~frT~~~~GlLl~~~~~~-----~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~lnDg~WH~V~  118 (218)
T d1h30a2          44 TWEVEVVAHIRPAADTGVLFALWAPD-----LRAVPLSVALVDYHSTKKLKKQLVVLAVEHTALALMEIKVCDGQEHVVT  118 (218)
T ss_dssp             CBCEEEEEEEEESSSCEEEEEEEEGG-----GTEEEEEEEEESCC-----CCCEEEEEETTEEEEEEECCTTSSCCEEEE
T ss_pred             ceeEEEEEEEEcCCCCcEEEEEecCC-----CceEEEEEEeeEEEEEEccCcceEEeccCceEEeccccccCCCCeEEEE
Confidence            34578999999999999999986531     22334556666666666554442        223445679999999999


Q ss_pred             EEEECCeEEEEECCeeeeeeecCCCc-------cccccCCCceeeccccCCCcccCcCcccccCceeEEeeeEEcCeeee
Q psy9228         476 IIKDFKEGKLSVGGEPLIVGSTPGEK-------LQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELD  548 (834)
Q Consensus       476 v~~~~~~~~l~VD~~~~~~~~~~g~~-------~~~l~~~~~l~iGG~~~~~~~~~~~~~~~~gF~GCi~~v~ing~~~~  548 (834)
                      +.|..+.++|.||+........++..       ...++....+|+||+|....   .......+|.||| ++.||++.++
T Consensus       119 v~~~~~~~~L~VD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lyvGG~P~~~~---~~~~~~~~F~GCi-~l~in~~~~d  194 (218)
T d1h30a2         119 VSLRDGEATLEVDGTRGQSEVSAAQLQERLAVLERHLRSPVLTFAGGLPDVPV---TSAPVTAFYRGCM-TLEVNRRLLD  194 (218)
T ss_dssp             EEEETTEEEEEETTEECEESSCHHHHHHHHHHHHHHHTSCCEEEESCCCSCCT---TSSSCCSBCCEEE-EEEETTEECC
T ss_pred             EEEECCEEEEEEecccceeeeccccccccccccceecccCceeeccCCCCccc---cccccCCCeeeeE-EEEECCEEec
Confidence            99999999999999876654332220       11245567899999997422   2234557999999 8999999999


Q ss_pred             ecccccccCCc--ccCCC
Q psy9228         549 LINSAVDSANI--MDCSD  564 (834)
Q Consensus       549 ~~~~~~~~~~~--~~C~~  564 (834)
                      +........++  ..|+.
T Consensus       195 l~~~~~~~~~v~~~~CP~  212 (218)
T d1h30a2         195 LDEAAYKHSDITAHSCPP  212 (218)
T ss_dssp             GGGSSEECTTSBTTCBCC
T ss_pred             cchhhhhcCCeecCCCCC
Confidence            98765554444  35654

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=4.1e-12  Score=84.31  Aligned_cols=38  Identities=37%  Similarity=0.923  Sum_probs=35.5

Q ss_pred             CCCCCCCCCCCCCeecccCCCCCceeeecCCCCCCCCCccC
Q psy9228         568 SPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKE  608 (834)
Q Consensus       568 ~~~C~~~pC~ngg~C~~~~~~~~~~~C~C~~G~~G~~Ce~~  608 (834)
                      +++|.++||+|+|+|++..+   +|+|.|++||+|++||.+
T Consensus         1 Id~C~~~PC~n~g~C~~~~~---~y~C~C~~G~~G~~Ce~d   38 (39)
T d2vj3a2           1 VNECVSNPCQNDATCLDQIG---EFQCICMPGYEGVHCEVN   38 (39)
T ss_dssp             CCTTTTCCCCSSCEEEECSS---CEEEECCTTEESSSSCEE
T ss_pred             CcCCcCCCCCCCCEEECCCC---CEEEeCCCCCccCcCeeC
Confidence            47899999999999999988   999999999999999975

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=7.3e-12  Score=84.45  Aligned_cols=38  Identities=34%  Similarity=0.847  Sum_probs=34.2

Q ss_pred             CCCCCCCCEeccCCCCCceEeeCCCCCCCCCCCCCCCC
Q psy9228         143 HNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLGEP  180 (834)
Q Consensus       143 ~~pC~n~g~C~~~~~~~~~~C~C~~g~~G~~Ce~~~~~  180 (834)
                      ++||+|||+|++.....+|+|.|++||+|++||.++++
T Consensus         3 ~nPC~ngG~C~~~~~~~~y~C~C~~g~~G~~Ce~~~~~   40 (41)
T d1tpga1           3 EPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEIDTRA   40 (41)
T ss_dssp             SCCSCTTCEEEEESSSSCEEEECCTTCBSSSCCBCSSC
T ss_pred             CCCCCCCCEEecCCCCCCeEECCCCCCCCCCcCcCcCC
Confidence            89999999999876667899999999999999988754

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=5.9e-12  Score=83.53  Aligned_cols=37  Identities=41%  Similarity=0.951  Sum_probs=34.8

Q ss_pred             CCCCCCCCCCCCeecccCCCCCceeeecCCCCCCCCCccC
Q psy9228         569 PVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKE  608 (834)
Q Consensus       569 ~~C~~~pC~ngg~C~~~~~~~~~~~C~C~~G~~G~~Ce~~  608 (834)
                      |+|.++||+|||+|++.++   +|+|.|++||+|++||..
T Consensus         1 D~C~~~PC~ngg~C~~~~~---~y~C~C~~G~~G~~Cei~   37 (39)
T d1xkba1           1 DQCETSPCQNQGKCKDGLG---EYTCTCLEGFEGKNCELF   37 (39)
T ss_dssp             CTTTTCCCCSSCEECCCSS---SCCEECCTTEETTTTCEE
T ss_pred             CcCCCCCCCCCcEEECCCC---CEEEECCCCCCcCcCeEc
Confidence            5799999999999999998   999999999999999975

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=8.1e-12  Score=80.88  Aligned_cols=35  Identities=34%  Similarity=0.959  Sum_probs=33.3

Q ss_pred             CCCCCCCCCCCCeecccCCCCCceeeecCCCCCCCCCc
Q psy9228         569 PVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCE  606 (834)
Q Consensus       569 ~~C~~~pC~ngg~C~~~~~~~~~~~C~C~~G~~G~~Ce  606 (834)
                      ++|.++||+|||+|++.++   +|+|.|++||+|++||
T Consensus         1 d~C~~~PC~ngg~C~~~~~---~y~C~C~~g~~G~~CE   35 (35)
T d2vj3a3           1 DECASSPCLHNGRCLDKIN---EFQCECPTGFTGHLCQ   35 (35)
T ss_dssp             CTTTTCCSTTTCEEEECSS---CEEEECCTTEESSSSC
T ss_pred             CCCCCCCCCCCcEEECCCC---CeEEECCCCCCCCCcC
Confidence            5799999999999999998   9999999999999997

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=9.4e-12  Score=82.55  Aligned_cols=37  Identities=41%  Similarity=0.944  Sum_probs=33.6

Q ss_pred             CccCCCCCCCCCCCCEeccCCCCCceEeeCCCCCCCCCCCCC
Q psy9228         136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVL  177 (834)
Q Consensus       136 ~~C~~~~~~pC~n~g~C~~~~~~~~~~C~C~~g~~G~~Ce~~  177 (834)
                      |+|.   ++||+|+|+|++..  ++|+|.|++||+|++||.+
T Consensus         2 d~C~---~~PC~n~g~C~~~~--~~y~C~C~~G~~G~~Ce~d   38 (39)
T d2vj3a2           2 NECV---SNPCQNDATCLDQI--GEFQCICMPGYEGVHCEVN   38 (39)
T ss_dssp             CTTT---TCCCCSSCEEEECS--SCEEEECCTTEESSSSCEE
T ss_pred             cCCc---CCCCCCCCEEECCC--CCEEEeCCCCCccCcCeeC
Confidence            5788   99999999999876  8999999999999999864

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=1.5e-11  Score=81.73  Aligned_cols=37  Identities=35%  Similarity=0.864  Sum_probs=34.7

Q ss_pred             CCCCCCCCCCCCCeecccCCCCCceeeecCCCCCCCCCcc
Q psy9228         568 SPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEK  607 (834)
Q Consensus       568 ~~~C~~~pC~ngg~C~~~~~~~~~~~C~C~~G~~G~~Ce~  607 (834)
                      .++|.++||+|||+|++.++   +|+|.|++||+|++||.
T Consensus         3 ~d~C~~~PC~ngg~C~~~~~---~y~C~C~~g~~G~~Cei   39 (39)
T d1edmb_           3 GDQCESNPCLNGGSCKDDIN---SYECWCPFGFEGKNCEL   39 (39)
T ss_dssp             CCTTTTCCCCTTCEEEEETT---EEEEECCTTCCSTTSCC
T ss_pred             cccCCCCCCCCCcEEEcCCC---CEEEECCCCCCCCCCCC
Confidence            47999999999999999988   99999999999999984

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=8.6e-12  Score=82.72  Aligned_cols=37  Identities=38%  Similarity=1.004  Sum_probs=33.4

Q ss_pred             CccCCCCCCCCCCCCEeccCCCCCceEeeCCCCCCCCCCCCC
Q psy9228         136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVL  177 (834)
Q Consensus       136 ~~C~~~~~~pC~n~g~C~~~~~~~~~~C~C~~g~~G~~Ce~~  177 (834)
                      |+|.   ++||+|+|+|++..  ++|+|.|++||+|++||..
T Consensus         1 D~C~---~~PC~ngg~C~~~~--~~y~C~C~~G~~G~~Cei~   37 (39)
T d1xkba1           1 DQCE---TSPCQNQGKCKDGL--GEYTCTCLEGFEGKNCELF   37 (39)
T ss_dssp             CTTT---TCCCCSSCEECCCS--SSCCEECCTTEETTTTCEE
T ss_pred             CcCC---CCCCCCCcEEECCC--CCEEEECCCCCCcCcCeEc
Confidence            5788   99999999999876  8999999999999999864

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.6e-11  Score=79.49  Aligned_cols=35  Identities=37%  Similarity=1.058  Sum_probs=32.1

Q ss_pred             CccCCCCCCCCCCCCEeccCCCCCceEeeCCCCCCCCCCC
Q psy9228         136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCS  175 (834)
Q Consensus       136 ~~C~~~~~~pC~n~g~C~~~~~~~~~~C~C~~g~~G~~Ce  175 (834)
                      |+|.   ++||+|+|+|++..  ++|+|.|++||+|++||
T Consensus         1 d~C~---~~PC~ngg~C~~~~--~~y~C~C~~g~~G~~CE   35 (35)
T d2vj3a3           1 DECA---SSPCLHNGRCLDKI--NEFQCECPTGFTGHLCQ   35 (35)
T ss_dssp             CTTT---TCCSTTTCEEEECS--SCEEEECCTTEESSSSC
T ss_pred             CCCC---CCCCCCCcEEECCC--CCeEEECCCCCCCCCcC
Confidence            5788   99999999999876  89999999999999996

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.11  E-value=9.2e-12  Score=81.64  Aligned_cols=36  Identities=42%  Similarity=0.942  Sum_probs=34.0

Q ss_pred             CCCCCCCCCCCCCeecccCCCCCceeeecCCCCCCCCCc
Q psy9228         568 SPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCE  606 (834)
Q Consensus       568 ~~~C~~~pC~ngg~C~~~~~~~~~~~C~C~~G~~G~~Ce  606 (834)
                      +++|.++||+|||+|++.++   +|+|.|++||+|++||
T Consensus         2 ~d~C~~~PC~ngg~C~~~~~---~y~C~C~~g~~G~~Ce   37 (37)
T d2c4fl1           2 GDQCASSPCQNGGSCKDQLQ---SYICFCLPAFEGRNCE   37 (37)
T ss_dssp             CCGGGGCCCCTTCEEEEETT---EEEEECCTTEESTTSC
T ss_pred             cccCCCCCCCCCCEEECCCC---CeEEECCCCCcCCCCC
Confidence            47899999999999999998   9999999999999997

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=8.2e-12  Score=83.06  Aligned_cols=38  Identities=34%  Similarity=0.804  Sum_probs=35.4

Q ss_pred             CCCCCCCCCCCCeecccCCCCCceeeecCCCCCCCCCccCc
Q psy9228         569 PVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKEN  609 (834)
Q Consensus       569 ~~C~~~pC~ngg~C~~~~~~~~~~~C~C~~G~~G~~Ce~~~  609 (834)
                      +.|.++||+|||+|++.++   +|+|.|++||+|++||.++
T Consensus         2 ~~C~~~pC~ngg~C~~~~~---~~~C~C~~g~~G~~Ce~~v   39 (39)
T d1g1ta2           2 AACTNTSCSGHGECVETIN---NYTCKCDPGFSGLKCEQIV   39 (39)
T ss_dssp             CCCCTTGGGGSEEEEEETT---EEEEEECTTEESTTSCEEC
T ss_pred             CcccCCcCCCCcEEECCCC---CEEEeCCCCCcCcCcCccC
Confidence            5799999999999999998   9999999999999999753

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=3.3e-11  Score=81.17  Aligned_cols=40  Identities=28%  Similarity=0.707  Sum_probs=34.3

Q ss_pred             CCCCCCCCCCeecccCCCCCceeeecCCCCCCCCCccCccC
Q psy9228         571 CAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENNM  611 (834)
Q Consensus       571 C~~~pC~ngg~C~~~~~~~~~~~C~C~~G~~G~~Ce~~~~~  611 (834)
                      |.++||+|||+|++... ..+|+|.|++||+|++||.++++
T Consensus         1 C~~nPC~ngG~C~~~~~-~~~y~C~C~~g~~G~~Ce~~~~~   40 (41)
T d1tpga1           1 CSEPRCFNGGTCQQALY-FSDFVCQCPEGFAGKSCEIDTRA   40 (41)
T ss_dssp             CSSCCSCTTCEEEEESS-SSCEEEECCTTCBSSSCCBCSSC
T ss_pred             CcCCCCCCCCEEecCCC-CCCeEECCCCCCCCCCcCcCcCC
Confidence            78999999999998753 24899999999999999988653

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=3.4e-11  Score=80.05  Aligned_cols=37  Identities=41%  Similarity=1.008  Sum_probs=35.2

Q ss_pred             CccCCCCCCccCCCceeeecCCCcEEcCCCCCCCCCcc
Q psy9228         608 ENNMCMKGDVCKNGGMCKVTPDSYECLCSLGYAPPNCA  645 (834)
Q Consensus       608 ~~~~C~~~~pC~ngg~C~~~~~~~~C~C~~g~~G~~Ce  645 (834)
                      ++|+|.++ ||+|+|+|++..++|+|.|++||+|++||
T Consensus         2 d~d~C~~~-PC~ngg~C~~~~~~y~C~C~~g~~G~~Ce   38 (39)
T d1edmb_           2 DGDQCESN-PCLNGGSCKDDINSYECWCPFGFEGKNCE   38 (39)
T ss_dssp             CCCTTTTC-CCCTTCEEEEETTEEEEECCTTCCSTTSC
T ss_pred             ccccCCCC-CCCCCcEEEcCCCCEEEECCCCCCCCCCC
Confidence            46899998 99999999999999999999999999998

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.08  E-value=1.9e-11  Score=80.13  Aligned_cols=35  Identities=37%  Similarity=1.034  Sum_probs=32.5

Q ss_pred             CccCCCCCCCCCCCCEeccCCCCCceEeeCCCCCCCCCCC
Q psy9228         136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCS  175 (834)
Q Consensus       136 ~~C~~~~~~pC~n~g~C~~~~~~~~~~C~C~~g~~G~~Ce  175 (834)
                      |+|.   ++||+|+|+|++..  ++|+|.|++||+|++||
T Consensus         3 d~C~---~~PC~ngg~C~~~~--~~y~C~C~~g~~G~~Ce   37 (37)
T d2c4fl1           3 DQCA---SSPCQNGGSCKDQL--QSYICFCLPAFEGRNCE   37 (37)
T ss_dssp             CGGG---GCCCCTTCEEEEET--TEEEEECCTTEESTTSC
T ss_pred             ccCC---CCCCCCCCEEECCC--CCeEEECCCCCcCCCCC
Confidence            6898   99999999999876  89999999999999996

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=1.4e-11  Score=81.85  Aligned_cols=38  Identities=37%  Similarity=0.952  Sum_probs=33.5

Q ss_pred             CccCCCCCCCCCCCCEeccCCCCCceEeeCCCCCCCCCCCCCC
Q psy9228         136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLG  178 (834)
Q Consensus       136 ~~C~~~~~~pC~n~g~C~~~~~~~~~~C~C~~g~~G~~Ce~~~  178 (834)
                      +.|.   ++||+|+|+|++..  ++|+|.|++||+|++||+++
T Consensus         2 ~~C~---~~pC~ngg~C~~~~--~~~~C~C~~g~~G~~Ce~~v   39 (39)
T d1g1ta2           2 AACT---NTSCSGHGECVETI--NNYTCKCDPGFSGLKCEQIV   39 (39)
T ss_dssp             CCCC---TTGGGGSEEEEEET--TEEEEEECTTEESTTSCEEC
T ss_pred             Cccc---CCcCCCCcEEECCC--CCEEEeCCCCCcCcCcCccC
Confidence            4688   99999999999876  89999999999999998653

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=4.7e-11  Score=82.81  Aligned_cols=45  Identities=29%  Similarity=0.745  Sum_probs=38.8

Q ss_pred             CCCCCCCCCCCCCCCCCCCeecccCCCCCceeeecCCCCCCCCCccCcc
Q psy9228         562 CSDLESSPVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKENN  610 (834)
Q Consensus       562 C~~~~~~~~C~~~pC~ngg~C~~~~~~~~~~~C~C~~G~~G~~Ce~~~~  610 (834)
                      |...+..++|.++||+| |+|++.++   +|+|.|++||+|++||.+|.
T Consensus         2 C~~~p~~~~C~~~PC~n-G~C~~~~~---~y~C~C~~G~~G~~Ce~~I~   46 (48)
T d1autl1           2 CLVLPLEHPCASLCCGH-GTCIDGIG---SFSCDCRSGWEGRFCQREVS   46 (48)
T ss_dssp             CCCCSSCCSSSSTTTTS-EEECCCSS---CCCEEECTTEESTTSCEECC
T ss_pred             cccCCCCCcccCCCCCC-CEEECCCC---CCeEeCCCCCcCCCcccccC
Confidence            34444568999999999 79999998   99999999999999998864

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=3.4e-11  Score=80.53  Aligned_cols=37  Identities=35%  Similarity=0.841  Sum_probs=34.8

Q ss_pred             CCCCCCCCCCCCeecccCCCCCceeeecCCCCCCCCCccC
Q psy9228         569 PVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKE  608 (834)
Q Consensus       569 ~~C~~~pC~ngg~C~~~~~~~~~~~C~C~~G~~G~~Ce~~  608 (834)
                      +.|.++||+|||+|++.++   +|+|.|++||+|++||..
T Consensus         2 ~~C~~~pC~ngg~C~~~~~---~y~C~C~~g~~G~~Ce~~   38 (40)
T d1g1sa2           2 ASCQDMSCSKQGECLETIG---NYTCSCYPGFYGPECEYV   38 (40)
T ss_dssp             CCCCTTGGGGSEEEEECSS---SEEEEECTTEESTTSCEE
T ss_pred             CcccCCcCCCCcEEECCCC---CeEEeCCCCccCCCCCCC
Confidence            5799999999999999998   999999999999999975

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=1.2e-10  Score=79.26  Aligned_cols=39  Identities=31%  Similarity=0.744  Sum_probs=33.9

Q ss_pred             CCCCCcc--CCCCCC-CeeecCCCCeEEeCCCCcccCccccc
Q psy9228         176 VLGEPCY--PGACGD-GSCQDVDGAMKCLCPIGTAGKRCEQK  214 (834)
Q Consensus       176 ~~~~~C~--~~~C~~-g~C~~~~~~~~C~C~~g~~G~~Ce~~  214 (834)
                      +++|||+  ++||+| |+|++..++|+|.|++||+|++||.+
T Consensus         1 qDideC~~~~~pC~n~g~C~n~~g~y~C~C~~G~~G~~Ce~d   42 (42)
T d2vj3a1           1 QDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCEID   42 (42)
T ss_dssp             CCCCTTTSSSCSSSTTCEEEECSSSEEEECCTTEESTTSCEE
T ss_pred             CCCccccCCCCCCCCCcEeECCCCCEEeECCCCCcCCCCcCc
Confidence            3688898  689986 79999999999999999999999863

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=5e-11  Score=79.71  Aligned_cols=37  Identities=35%  Similarity=0.927  Sum_probs=33.1

Q ss_pred             CccCCCCCCCCCCCCEeccCCCCCceEeeCCCCCCCCCCCCC
Q psy9228         136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVL  177 (834)
Q Consensus       136 ~~C~~~~~~pC~n~g~C~~~~~~~~~~C~C~~g~~G~~Ce~~  177 (834)
                      +.|.   ++||+|+|+|++..  ++|+|.|++||+|++||..
T Consensus         2 ~~C~---~~pC~ngg~C~~~~--~~y~C~C~~g~~G~~Ce~~   38 (40)
T d1g1sa2           2 ASCQ---DMSCSKQGECLETI--GNYTCSCYPGFYGPECEYV   38 (40)
T ss_dssp             CCCC---TTGGGGSEEEEECS--SSEEEEECTTEESTTSCEE
T ss_pred             Cccc---CCcCCCCcEEECCC--CCeEEeCCCCccCCCCCCC
Confidence            4677   99999999999876  8999999999999999864

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=1.1e-10  Score=79.47  Aligned_cols=38  Identities=34%  Similarity=0.836  Sum_probs=34.7

Q ss_pred             CccCCC--CCCccCCCceeeecCCCcEEcCCCCCCCCCccc
Q psy9228         608 ENNMCM--KGDVCKNGGMCKVTPDSYECLCSLGYAPPNCAK  646 (834)
Q Consensus       608 ~~~~C~--~~~pC~ngg~C~~~~~~~~C~C~~g~~G~~Ce~  646 (834)
                      ++|+|.  ++ ||+|+|+|++.+++|+|.|++||+|++||.
T Consensus         2 DideC~~~~~-pC~n~g~C~n~~g~y~C~C~~G~~G~~Ce~   41 (42)
T d2vj3a1           2 DVDECSLGAN-PCEHAGKCINTLGSFECQCLQGYTGPRCEI   41 (42)
T ss_dssp             CCCTTTSSSC-SSSTTCEEEECSSSEEEECCTTEESTTSCE
T ss_pred             CCccccCCCC-CCCCCcEeECCCCCEEeECCCCCcCCCCcC
Confidence            578887  45 999999999999999999999999999985

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=1.1e-10  Score=80.98  Aligned_cols=39  Identities=36%  Similarity=0.894  Sum_probs=36.1

Q ss_pred             CCCCccCCCCCCCeeecCCCCeEEeCCCCcccCcccccc
Q psy9228         177 LGEPCYPGACGDGSCQDVDGAMKCLCPIGTAGKRCEQKI  215 (834)
Q Consensus       177 ~~~~C~~~~C~~g~C~~~~~~~~C~C~~g~~G~~Ce~~~  215 (834)
                      ..++|.++||+||+|++..++|+|.|++||+|++||+++
T Consensus         7 ~~~~C~~~PC~nG~C~~~~~~y~C~C~~G~~G~~Ce~~I   45 (48)
T d1autl1           7 LEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREV   45 (48)
T ss_dssp             SCCSSSSTTTTSEEECCCSSCCCEEECTTEESTTSCEEC
T ss_pred             CCCcccCCCCCCCEEECCCCCCeEeCCCCCcCCCccccc
Confidence            467999999999999999999999999999999999874

>d2erfa1 b.29.1.4 (A:10-215) Thrombospondin 1 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Thrombospondin 1 N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=1.8e-08  Score=97.18  Aligned_cols=149  Identities=9%  Similarity=0.070  Sum_probs=98.3

Q ss_pred             eeEEcCC-ceeeechhhhh------hccCcceEEEEEEeCC-CCeeEEecCCCCCCCCCCcceEEEEEE--CCEEEEEEE
Q psy9228         653 EVHFLGE-GYVELKKELIE------ERRNEETIAFDFVTDD-KNALLLWNGQPSYKNGIGREFIAVAVV--NGYLEYSYD  722 (834)
Q Consensus       653 ~~~F~g~-s~~~~~~~~~~------~~~~~~~i~~~frT~~-~~GlLl~~~~~~~~~~~~~~~~~l~l~--~G~l~~~~~  722 (834)
                      ++.|.+. .++..+...+.      .....+.|+++||+.. ..|.||......    ....++.|.+.  .+.+.+.|.
T Consensus        31 Ay~f~~~~~~~~~~~~~~~~~~~~~~~~~~Fti~~~~r~~~~~~~~l~s~~~~~----~~~~~~~l~~~g~~~~l~~~~~  106 (206)
T d2erfa1          31 AFRIEDANLIPPVPDDKFQDLVDAVRTEKGFLLLASLRQMKKTRGTLLALERKD----HSGQVFSVVSNGKAGTLDLSLT  106 (206)
T ss_dssp             EEEESCGGGSCCCCHHHHHHHHHHHHHHTEEEEEEEEEECTTCEEEEEEEEETT----SSCEEEEEEEETTTTEEEEEEE
T ss_pred             EEEEcCccccccCChhhhhhhccccCCCCCEEEEEEEEcCCCCCCEEEEEEcCC----CCEEEEEEEEcCCCCEEEEEEe
Confidence            6778773 45544433211      1136789999999976 568888654432    12456667666  568888887


Q ss_pred             cCCcEEEEEeCCceecCCCcEEEEEEEECCEEEEEEcCeeeecccCCCCccc-----eecCCceEEcCcCCCCCCCCCcc
Q psy9228         723 LGDGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDV-----INTRGNIYLGGTPNMDLMTGGRY  797 (834)
Q Consensus       723 ~g~~~~~l~~s~~~~nDg~wH~V~i~r~~~~~~l~VD~~~~~~~~~~~~~~~-----l~~~~~lyiGG~p~~~~~~~~~~  797 (834)
                      .++....+......+.||+||+|.+.+.++.++|+||++.+...........     +...+.+++|..+         .
T Consensus       107 ~~~~~~~~~~~~~~l~d~~Whhva~~~~~~~v~lyvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---------~  177 (206)
T d2erfa1         107 VQGKQHVVSVEEALLATGQWKSITLFVQEDRAQLYIDCEKMENAELDVPIQSVFTRDLASIARLRIAKGG---------V  177 (206)
T ss_dssp             ETTEEEEEEESSCCCCSSSEEEEEEEEETTEEEEEETTTEEEEEECSSCGGGTCCTTHHHHEEEEESCCT---------T
T ss_pred             CCCceEEEEeccccccCCCEEEEEEEEeCCEEEEEECCEEEEeEEccCCcccccCCccceeEEEEEccCC---------C
Confidence            7766655554677899999999999999999999999988755332211111     1112356777432         2


Q ss_pred             CCCceEEEEEEE-ECCce
Q psy9228         798 VHPMSGLMMNIH-IQNKH  814 (834)
Q Consensus       798 ~~~F~GCi~~v~-in~~~  814 (834)
                      .+.|.|+|.+|+ |-|..
T Consensus       178 ~~~F~G~i~dvrli~g~~  195 (206)
T d2erfa1         178 NDNFQGVLQNVRFVFGTT  195 (206)
T ss_dssp             TCBCCEEEEEEEEECSCC
T ss_pred             CCCCEEEeEEEEEECCCc
Confidence            356999999998 55543

>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.88  E-value=4e-10  Score=75.70  Aligned_cols=37  Identities=41%  Similarity=1.004  Sum_probs=32.8

Q ss_pred             CCCCCCCCCCCCeeccc-CCCCCceeeecC-CCCCCCCCccC
Q psy9228         569 PVCAPKPCQNYGICYPT-DTSERGYNCSCL-TGYSGDHCEKE  608 (834)
Q Consensus       569 ~~C~~~pC~ngg~C~~~-~~~~~~~~C~C~-~G~~G~~Ce~~  608 (834)
                      ++|.++||+|||+|++. ++   +|+|+|+ +||+|++||+.
T Consensus         2 d~C~~~PC~ngG~C~~~~~~---~y~C~C~~~gy~G~~Ce~p   40 (41)
T d1cvua2           2 NPCCSNPCQNRGECMSTGFD---QYKCDCTRTGFYGENCTTP   40 (41)
T ss_dssp             CTTTTCCCCTTCEEEEEETT---EEEEECTTSSEETTTTCEE
T ss_pred             CcCcCCCCCCCCEEEECCCC---CEEEeCcCCCcCCcCcCcC
Confidence            68999999999999875 55   8999997 69999999963

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=98.87  E-value=2.6e-10  Score=77.05  Aligned_cols=37  Identities=41%  Similarity=0.907  Sum_probs=33.0

Q ss_pred             CCCCCCCCCCCCCeeccc-CCCCCceeeecCC-CCCCCCCcc
Q psy9228         568 SPVCAPKPCQNYGICYPT-DTSERGYNCSCLT-GYSGDHCEK  607 (834)
Q Consensus       568 ~~~C~~~pC~ngg~C~~~-~~~~~~~~C~C~~-G~~G~~Ce~  607 (834)
                      +++|.++||+|||+|++. ++   +|+|+|+. ||+|++||+
T Consensus         2 id~C~~nPC~ngG~C~~~~~~---~y~C~C~~~G~~G~~Ce~   40 (42)
T d1q4ga2           2 VNPCCYYPCQHQGICVRFGLD---RYQCDCTRTGYSGPNCTI   40 (42)
T ss_dssp             CCGGGGCCCCTTCEEEEETTT---EEEEECTTSSEETTTTCE
T ss_pred             CccCcCCCCCCCCEeeeCCCC---CEEEECCCCCcCCcCcCc
Confidence            478999999999999875 55   99999985 999999996

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=3.9e-10  Score=84.58  Aligned_cols=52  Identities=27%  Similarity=0.544  Sum_probs=41.7

Q ss_pred             CCCCccCCCCCCCCCCCCEecc---CCCCCceEeeCCCCCCCCCCCCCCCCccCCCCC
Q psy9228         133 DSCNTCKSSKHNNCINNGLCQD---AATRIGYTCICPPGFSGDRCSVLGEPCYPGACG  187 (834)
Q Consensus       133 ~~c~~C~~~~~~pC~n~g~C~~---~~~~~~~~C~C~~g~~G~~Ce~~~~~C~~~~C~  187 (834)
                      ..|++|.   ++||+|||+|..   ....++|.|.|++||+|++||..+..+...++.
T Consensus         4 ~~c~ec~---~~~C~NgG~C~~~~~~~~~~~y~C~C~~gy~G~~Ce~~~~~~~~~~~~   58 (63)
T d1haea_           4 VKCAEKE---KTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPMKVQNQEK   58 (63)
T ss_dssp             EECCHHH---HTTSCTTCEEEEEESSSSSCCEEEECCTTEESTTSCEECCSSCTTCTT
T ss_pred             ccCCCCc---CCcCCCCCEEeecccccCCCCEEeECCCCCCCCCcCCCCCccccCCcc
Confidence            3578899   999999999953   122378999999999999999888777766543

>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.83  E-value=5.7e-10  Score=74.90  Aligned_cols=37  Identities=38%  Similarity=0.887  Sum_probs=31.6

Q ss_pred             CccCCCCCCCCCCCCEeccCCCCCceEeeCC-CCCCCCCCCC
Q psy9228         136 NTCKSSKHNNCINNGLCQDAATRIGYTCICP-PGFSGDRCSV  176 (834)
Q Consensus       136 ~~C~~~~~~pC~n~g~C~~~~~~~~~~C~C~-~g~~G~~Ce~  176 (834)
                      |+|.   ++||+|+|+|++.. +++|+|.|+ +||+|++||+
T Consensus         2 d~C~---~~PC~ngG~C~~~~-~~~y~C~C~~~gy~G~~Ce~   39 (41)
T d1cvua2           2 NPCC---SNPCQNRGECMSTG-FDQYKCDCTRTGFYGENCTT   39 (41)
T ss_dssp             CTTT---TCCCCTTCEEEEEE-TTEEEEECTTSSEETTTTCE
T ss_pred             CcCc---CCCCCCCCEEEECC-CCCEEEeCcCCCcCCcCcCc
Confidence            5788   99999999998742 378999997 6999999985

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=98.82  E-value=6.2e-10  Score=75.16  Aligned_cols=37  Identities=32%  Similarity=0.831  Sum_probs=31.7

Q ss_pred             CccCCCCCCCCCCCCEeccCCCCCceEeeCCC-CCCCCCCCC
Q psy9228         136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPP-GFSGDRCSV  176 (834)
Q Consensus       136 ~~C~~~~~~pC~n~g~C~~~~~~~~~~C~C~~-g~~G~~Ce~  176 (834)
                      |+|.   ++||+|+|+|++.. +++|+|.|++ ||+|++||+
T Consensus         3 d~C~---~nPC~ngG~C~~~~-~~~y~C~C~~~G~~G~~Ce~   40 (42)
T d1q4ga2           3 NPCC---YYPCQHQGICVRFG-LDRYQCDCTRTGYSGPNCTI   40 (42)
T ss_dssp             CGGG---GCCCCTTCEEEEET-TTEEEEECTTSSEETTTTCE
T ss_pred             ccCc---CCCCCCCCEeeeCC-CCCEEEECCCCCcCCcCcCc
Confidence            5788   99999999998642 4789999986 899999985

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.81  E-value=2.5e-09  Score=76.31  Aligned_cols=43  Identities=35%  Similarity=0.835  Sum_probs=36.1

Q ss_pred             CCCCccCCCCCCCCCCCCEeccCCCCCceEeeCCCCCCCCCCCCCC
Q psy9228         133 DSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVLG  178 (834)
Q Consensus       133 ~~c~~C~~~~~~pC~n~g~C~~~~~~~~~~C~C~~g~~G~~Ce~~~  178 (834)
                      ..|.+|.   ++||+|||+|.......+|+|.|++||+|++||...
T Consensus         4 ~~C~~c~---~~~C~NgG~C~~~~~~~~~~C~C~~gy~G~~Ce~~~   46 (53)
T d3egfa_           4 PGCPSSY---DGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQTRD   46 (53)
T ss_dssp             CCCCTTS---SCCSCSSCEEEEESSSSCEEEECCTTCCSSSSCCCS
T ss_pred             CCCCCCC---CCCCCCCcEeeccCCCCCeEeECCCCCcCCCCccCC
Confidence            3567788   899999999986555578999999999999998743

>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=8e-10  Score=77.13  Aligned_cols=41  Identities=27%  Similarity=0.759  Sum_probs=34.7

Q ss_pred             CCCccCCCCCCCCCCCCEeccCCCCCceEeeCCCCCCCCCCCCC
Q psy9228         134 SCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVL  177 (834)
Q Consensus       134 ~c~~C~~~~~~pC~n~g~C~~~~~~~~~~C~C~~g~~G~~Ce~~  177 (834)
                      .|.+|.   .+||+|||+|.......+|+|.|++||+|.+||+.
T Consensus         3 ~C~~c~---~~~C~ngG~C~~~~~~~~~~C~C~~gy~G~~Ce~~   43 (48)
T d1nqlb_           3 ECPLSH---DGYCLHDGVCMYIEALDKYACNCVVGYIGERCQYR   43 (48)
T ss_dssp             ECCSTT---CCEECTTCEEEEETTTTEEEEEECTTEESTTSCEE
T ss_pred             cCCCCC---CCCCCCCcEEeeeCCCCCeEEeCCCCcccCCCCcC
Confidence            467888   99999999998765557899999999999999853

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=4.4e-09  Score=78.71  Aligned_cols=44  Identities=25%  Similarity=0.638  Sum_probs=37.2

Q ss_pred             CCCCCCCCCCCCeec-----ccCCCCCceeeecCCCCCCCCCccCccCCCCC
Q psy9228         569 PVCAPKPCQNYGICY-----PTDTSERGYNCSCLTGYSGDHCEKENNMCMKG  615 (834)
Q Consensus       569 ~~C~~~pC~ngg~C~-----~~~~~~~~~~C~C~~G~~G~~Ce~~~~~C~~~  615 (834)
                      ++|.++||+|||+|.     +.++   +|.|.|++||+|++||..+..+...
T Consensus         7 ~ec~~~~C~NgG~C~~~~~~~~~~---~y~C~C~~gy~G~~Ce~~~~~~~~~   55 (63)
T d1haea_           7 AEKEKTFCVNGGECFMVKDLSNPS---RYLCKCQPGFTGARCTENVPMKVQN   55 (63)
T ss_dssp             CHHHHTTSCTTCEEEEEESSSSSC---CEEEECCTTEESTTSCEECCSSCTT
T ss_pred             CCCcCCcCCCCCEEeecccccCCC---CEEeECCCCCCCCCcCCCCCccccC
Confidence            468899999999995     3444   8999999999999999998776655

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.47  E-value=6.4e-08  Score=68.86  Aligned_cols=39  Identities=36%  Similarity=0.903  Sum_probs=32.2

Q ss_pred             CCCCCCCCCCCCeecccCCCCCceeeecCCCCCCCCCccC
Q psy9228         569 PVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKE  608 (834)
Q Consensus       569 ~~C~~~pC~ngg~C~~~~~~~~~~~C~C~~G~~G~~Ce~~  608 (834)
                      ++|.++||+|||+|..... ...|+|.|++||+|++||..
T Consensus         7 ~~c~~~~C~NgG~C~~~~~-~~~~~C~C~~gy~G~~Ce~~   45 (53)
T d3egfa_           7 PSSYDGYCLNGGVCMHIES-LDSYTCNCVIGYSGDRCQTR   45 (53)
T ss_dssp             CTTSSCCSCSSCEEEEESS-SSCEEEECCTTCCSSSSCCC
T ss_pred             CCCCCCCCCCCcEeeccCC-CCCeEeECCCCCcCCCCccC
Confidence            4688999999999974322 13899999999999999975

>d1b09a_ b.29.1.5 (A:) C-reactive protein (CRP) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Pentraxin (pentaxin)
domain: C-reactive protein (CRP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=4.3e-06  Score=80.01  Aligned_cols=150  Identities=13%  Similarity=0.060  Sum_probs=93.4

Q ss_pred             eeeEEcC---CceeeechhhhhhccCcceEEEEEEeCC---CCeeEEecCCCCCCCCCCcceEEEEEEC-CEEEEEEEcC
Q psy9228         652 SEVHFLG---EGYVELKKELIEERRNEETIAFDFVTDD---KNALLLWNGQPSYKNGIGREFIAVAVVN-GYLEYSYDLG  724 (834)
Q Consensus       652 ~~~~F~g---~s~~~~~~~~~~~~~~~~~i~~~frT~~---~~GlLl~~~~~~~~~~~~~~~~~l~l~~-G~l~~~~~~g  724 (834)
                      .++.|.+   +.|+++++... .....++|+++||+..   ....+|..+...     ....+.+...+ +.+.+.  .+
T Consensus         7 ~af~F~~~s~~dYv~l~~~~~-~~~~~fTvs~Wvk~~~~~~~~~~~~s~~~~~-----~~~~~~~~~~~~~~~~~~--~~   78 (206)
T d1b09a_           7 KAFVFPKESDTSYVSLKAPLT-KPLKAFTVCLHFYTELSSTRGYSIFSYATKR-----QDNEILIFWSKDIGYSFT--VG   78 (206)
T ss_dssp             EEEEECSCCSSCEEEECCCCC-SCBSEEEEEEEEECSGGGTCCEEEEEEECSS-----CTTSEEEEEETTTEEEEE--ET
T ss_pred             CEEEcCCCCCCCEEEECCCCC-CCCcCEEEEEEEEeCCCCCCcceEEEecCCC-----CceeEEEEecCCccEEEE--ec
Confidence            5788943   67999865432 2246899999999743   233344333221     13456566653 444433  33


Q ss_pred             CcEEEEEeCCceecCCCcEEEEEEEECC--EEEEEEcCeeeecccCCCCccceecCCceEEcCcCCCCCCCCCccCCCce
Q psy9228         725 DGVVTIKFSKKPVNDGIKHSVNVTRINK--FGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPNMDLMTGGRYVHPMS  802 (834)
Q Consensus       725 ~~~~~l~~s~~~~nDg~wH~V~i~r~~~--~~~l~VD~~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~~~~~~~~~~~F~  802 (834)
                      ....  . ....+.+++||||.+++...  .++|+|||..+....... .......+.++||.-..... ........|.
T Consensus        79 ~~~~--~-~~~~~~~~~W~Hvavt~d~~~g~~~lYinG~~~~~~~~~~-~~~~~~~~~~~iG~~~~~~g-~~~~~~~~F~  153 (206)
T d1b09a_          79 GSEI--L-FEVPEVTVAPVHICTSWESASGIVEFWVDGKPRVRKSLKK-GYTVGAEASIILGQEQDSFG-GNFEGSQSLV  153 (206)
T ss_dssp             TEEE--E-EECCCCCCSCEEEEEEEETTTCEEEEEETTEECCCEECCT-TCCBCSSCEEEESSCCSBTT-BCCCGGGCCC
T ss_pred             cccE--E-ecCcccCCcEEEEEEEEeccCCeEEEEECCeEEeeecccC-CceeccCCcEEecccccccc-ccccCCCcee
Confidence            3332  2 34668899999999999864  799999998876653222 23345557899996433211 0112345799


Q ss_pred             EEEEEEEECCce
Q psy9228         803 GLMMNIHIQNKH  814 (834)
Q Consensus       803 GCi~~v~in~~~  814 (834)
                      |-|.+|+|-++.
T Consensus       154 G~i~~~~i~~ra  165 (206)
T d1b09a_         154 GDIGNVNMWDFV  165 (206)
T ss_dssp             EEEEEEEEESSC
T ss_pred             eEEeeEEEEccc
Confidence            999999998864

>d1saca_ b.29.1.5 (A:) Serum amyloid P component (SAP) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Pentraxin (pentaxin)
domain: Serum amyloid P component (SAP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=4.6e-06  Score=79.64  Aligned_cols=150  Identities=14%  Similarity=0.057  Sum_probs=95.1

Q ss_pred             eeeEEcC---CceeeechhhhhhccCcceEEEEEEeCC-CCeeEE-ecCCCCCCCCCCcceEEEEEE-CCEEEEEEEcCC
Q psy9228         652 SEVHFLG---EGYVELKKELIEERRNEETIAFDFVTDD-KNALLL-WNGQPSYKNGIGREFIAVAVV-NGYLEYSYDLGD  725 (834)
Q Consensus       652 ~~~~F~g---~s~~~~~~~~~~~~~~~~~i~~~frT~~-~~GlLl-~~~~~~~~~~~~~~~~~l~l~-~G~l~~~~~~g~  725 (834)
                      .++.|.+   +.|++++.... .....++|+++|||.. ..+.+| +....      ....+.+.+. ++.+.+..  +.
T Consensus         7 kaf~F~~~~~~dYv~l~~~~~-~~~~~fTvs~Wvk~~~~~~~~~~s~~~~~------~~~~~~~~~~~~~~~~~~~--~~   77 (204)
T d1saca_           7 KVFVFPRESVTDHVNLITPLE-KPLQNFTLCFRAYSDLSRAYSLFSYNTQG------RDNELLVYKERVGEYSLYI--GR   77 (204)
T ss_dssp             EEEEECSCCSSCEEEECCCCC-SCBSEEEEEEEEECCCCSCEEEEEEEETT------EEEEEEEEEEETTEEEEEE--TT
T ss_pred             CEEECCCCCCCcEEEeCCCCC-CCCCCEEEEEEEEccCCCCcEEEEEecCC------CCCcceeeccCCceEeeec--cc
Confidence            4678954   47999864432 2247899999999855 444555 43322      1233334443 66665543  33


Q ss_pred             cEEEEEeCCceecCCCcEEEEEEEECC--EEEEEEcCeeeecccCCCCccceecCCceEEcCcCCCCCCCCCccCCCceE
Q psy9228         726 GVVTIKFSKKPVNDGIKHSVNVTRINK--FGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPNMDLMTGGRYVHPMSG  803 (834)
Q Consensus       726 ~~~~l~~s~~~~nDg~wH~V~i~r~~~--~~~l~VD~~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~~~~~~~~~~~F~G  803 (834)
                      ..  +. +...+.+++||||.+++.+.  .++|+|||.......... .......+.++||-..... .........|.|
T Consensus        78 ~~--~~-~~~~~~~~~W~Hv~~t~d~~~g~~~~YiNG~~~~~~~~~~-~~~~~~~~~~~iG~~~~~~-gg~~~~~~~f~G  152 (204)
T d1saca_          78 HK--VT-SKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQ-GYFVEAQPKIVLGQEQDSY-GGKFDRSQSFVG  152 (204)
T ss_dssp             EE--EE-EECCCCSSCCEEEEEEEETTTCEEEEEETTEECCCEECCT-TCCBCSSCEEEESSCCSSS-SCCCCGGGCCCE
T ss_pred             ce--EE-ecccccCCceEEEEEEEecCCCcEEEEECCEEEeeecccc-eeeeecccceecccccccc-CCCCCcccceeE
Confidence            22  22 45679999999999999964  799999998766543222 2234556779999654331 111123567999


Q ss_pred             EEEEEEECCcee
Q psy9228         804 LMMNIHIQNKHI  815 (834)
Q Consensus       804 Ci~~v~in~~~~  815 (834)
                      =|.+|+|-++.+
T Consensus       153 ~i~~~~i~~~aL  164 (204)
T d1saca_         153 EIGDLYMWDSVL  164 (204)
T ss_dssp             EEEEEEEESSCC
T ss_pred             EecceEEEcccC
Confidence            999999988653

>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=6.4e-08  Score=67.28  Aligned_cols=39  Identities=28%  Similarity=0.818  Sum_probs=32.2

Q ss_pred             CCCCCCCCCCCCeecccCCCCCceeeecCCCCCCCCCccC
Q psy9228         569 PVCAPKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKE  608 (834)
Q Consensus       569 ~~C~~~pC~ngg~C~~~~~~~~~~~C~C~~G~~G~~Ce~~  608 (834)
                      ++|.++||+|||+|..... ..+|+|.|++||+|++||..
T Consensus         5 ~~c~~~~C~ngG~C~~~~~-~~~~~C~C~~gy~G~~Ce~~   43 (48)
T d1nqlb_           5 PLSHDGYCLHDGVCMYIEA-LDKYACNCVVGYIGERCQYR   43 (48)
T ss_dssp             CSTTCCEECTTCEEEEETT-TTEEEEEECTTEESTTSCEE
T ss_pred             CCCCCCCCCCCcEEeeeCC-CCCeEEeCCCCcccCCCCcC
Confidence            4688999999999975432 13899999999999999965

>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epiregulin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=1.4e-07  Score=64.35  Aligned_cols=42  Identities=24%  Similarity=0.657  Sum_probs=33.3

Q ss_pred             CCCCCccCCCCCCCCCCCCEeccCCCCCceEeeCCCCCCCCCCCCC
Q psy9228         132 VDSCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSVL  177 (834)
Q Consensus       132 ~~~c~~C~~~~~~pC~n~g~C~~~~~~~~~~C~C~~g~~G~~Ce~~  177 (834)
                      +..|.++.   .++|.| |.|.-......|.|.|++||+|.+||+.
T Consensus         3 i~~C~~~~---~~yC~n-G~C~~~~~~~~~~C~C~~gY~G~RCe~~   44 (46)
T d1k36a_           3 ITKCSSDM---NGYCLH-GQCIYLVDMSQNYCRCEVGYTGVRCEHF   44 (46)
T ss_dssp             EECCCTTC---CSSCSS-EEEEEETTTTEEEEEECTTCSSTTSCCC
T ss_pred             eeeCCCcC---CCcCcC-CEEEEeCCCCccEeECCCCceecCceee
Confidence            45677777   899999 6676444447899999999999999864

>d2slia1 b.29.1.9 (A:81-276) Leech intramolecular trans-sialidase, N-terminal domain {North american leech (Macrobdella decora) [TaxId: 6405]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Leech intramolecular trans-sialidase, N-terminal domain
domain: Leech intramolecular trans-sialidase, N-terminal domain
species: North american leech (Macrobdella decora) [TaxId: 6405]

Probab=98.14  E-value=8.4e-06  Score=77.16  Aligned_cols=136  Identities=17%  Similarity=0.228  Sum_probs=86.4

Q ss_pred             cCcceEEEEEEeCCCC--eeEEecCCCCCCCCCCcceEEEEEE-CCEEEEEEEcCCc--EEEEEe----CCceecCCCcE
Q psy9228         673 RNEETIAFDFVTDDKN--ALLLWNGQPSYKNGIGREFIAVAVV-NGYLEYSYDLGDG--VVTIKF----SKKPVNDGIKH  743 (834)
Q Consensus       673 ~~~~~i~~~frT~~~~--GlLl~~~~~~~~~~~~~~~~~l~l~-~G~l~~~~~~g~~--~~~l~~----s~~~~nDg~wH  743 (834)
                      .....|+++||+.+.+  ..||..+...  ......++.+.+. ++.+.+.+..+.+  ......    +...++||+||
T Consensus        34 ~~~~Ti~~w~k~~s~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~  111 (196)
T d2slia1          34 MTQGTIILSYKSTSENGIQSLFSVGNST--AGNQDRHFHIYITNSGGIGIELRNTDGVFNYTLDRPASVRALYKGERVFN  111 (196)
T ss_dssp             CSSEEEEEEEEECCCCSEEEEEEEECCS--TTCTTEEEEEEEETTSCEEEEEEECTTTCEEEEEESSCCCSEETTEECCE
T ss_pred             CCCEEEEEEEEECCCCCEEEEEEEeCCC--CCccCCEEEEEEeCCCceEEEEeeccccceEeecccceeecceecCCcEE
Confidence            4778999999987755  4666554332  1223456667766 7777776654433  222221    23457899999


Q ss_pred             EEEEEEEC--CEEEEEEcCeeeecccCCCCcc--ceecCCceEEcCcCCCCCCCCCccCCCceEEEEEEEECCcee
Q psy9228         744 SVNVTRIN--KFGSLEVDSVIVGKGESPGSQD--VINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNIHIQNKHI  815 (834)
Q Consensus       744 ~V~i~r~~--~~~~l~VD~~~~~~~~~~~~~~--~l~~~~~lyiGG~p~~~~~~~~~~~~~F~GCi~~v~in~~~~  815 (834)
                      +|.+++.+  +.++|+|||..+..........  .......+++|+....     ......|.|.|.+|+|-++.+
T Consensus       112 hva~t~d~~~~~~~lYvnG~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~~-----~~~~~~f~G~Id~v~iyn~aL  182 (196)
T d2slia1         112 TVALKADAANKQCRLFANGELLATLDKDAFKFISDITGVDNVTLGGTKRQ-----GKIAYPFGGTIGDIKVYSNAL  182 (196)
T ss_dssp             EEEEEEETTTTEEEEEETTEEEEEEECSSCCCGGGSTTCCEEEESSEEET-----TEEESCCCEEEEEEEEESSCC
T ss_pred             EEEEEEECCCCEEEEEECCeEEEEEecCCCccceeeeecceeeeeccccC-----CCCCccceEEeEEEEEECCcC
Confidence            99999985  4699999998876543322211  1122246888874432     123456999999999988643

>d2erfa1 b.29.1.4 (A:10-215) Thrombospondin 1 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Thrombospondin 1 N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=6.1e-05  Score=71.64  Aligned_cols=127  Identities=16%  Similarity=0.236  Sum_probs=80.3

Q ss_pred             eeEEEEEEEeeCC-CCeeEEEeccCCccccCCCCCeEEEEEEC--cEEEEEEecc-c--EEEEeeeeecCCCeEEEEEEE
Q psy9228         405 LHFSIELSFKPTD-YNGLIMYTGDSNMKSYKGKGDFVSFGLED--GYPVFRFDVG-L--VVLRSKVTLVPHEWVVVTIIK  478 (834)
Q Consensus       405 ~~~~i~~~frt~~-~~GlLl~~~~~~~~~~~~~~d~~~l~L~~--G~l~~~~~~G-~--~~i~s~~~~~dg~wH~V~v~~  478 (834)
                      ..|+|..+||+.. ..|.||...+.     .....++.+.+..  +.+.+.+..+ .  ........+.||+||+|.+..
T Consensus        59 ~~Fti~~~~r~~~~~~~~l~s~~~~-----~~~~~~~~l~~~g~~~~l~~~~~~~~~~~~~~~~~~~l~d~~Whhva~~~  133 (206)
T d2erfa1          59 KGFLLLASLRQMKKTRGTLLALERK-----DHSGQVFSVVSNGKAGTLDLSLTVQGKQHVVSVEEALLATGQWKSITLFV  133 (206)
T ss_dssp             TEEEEEEEEEECTTCEEEEEEEEET-----TSSCEEEEEEEETTTTEEEEEEEETTEEEEEEESSCCCCSSSEEEEEEEE
T ss_pred             CCEEEEEEEEcCCCCCCEEEEEEcC-----CCCEEEEEEEEcCCCCEEEEEEeCCCceEEEEeccccccCCCEEEEEEEE
Confidence            5799999999886 45777755432     2234556666664  3566666544 2  222335679999999999999


Q ss_pred             ECCeEEEEECCeeeeeeecCCCccccc-----cCCCceeeccccCCCcccCcCcccccCceeEEeeeE-EcCeeee
Q psy9228         479 DFKEGKLSVGGEPLIVGSTPGEKLQVL-----NLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTID-VLGSELD  548 (834)
Q Consensus       479 ~~~~~~l~VD~~~~~~~~~~g~~~~~l-----~~~~~l~iGG~~~~~~~~~~~~~~~~gF~GCi~~v~-ing~~~~  548 (834)
                      .+..++|+||+........... ....     .....+++|....           ...|.|+|++|+ |-|..++
T Consensus       134 ~~~~v~lyvD~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~-----------~~~F~G~i~dvrli~g~~l~  197 (206)
T d2erfa1         134 QEDRAQLYIDCEKMENAELDVP-IQSVFTRDLASIARLRIAKGGV-----------NDNFQGVLQNVRFVFGTTPE  197 (206)
T ss_dssp             ETTEEEEEETTTEEEEEECSSC-GGGTCCTTHHHHEEEEESCCTT-----------TCBCCEEEEEEEEECSCCHH
T ss_pred             eCCEEEEEECCEEEEeEEccCC-cccccCCccceeEEEEEccCCC-----------CCCCEEEeEEEEEECCCcHH
Confidence            9999999999987655432222 1111     1112344443211           356999999998 5565443

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=2.7e-06  Score=69.58  Aligned_cols=43  Identities=26%  Similarity=0.438  Sum_probs=36.3

Q ss_pred             CcEEEEecCC-CCCcccc---CCCeEEEcccCCCCCeeEEEEEcCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA---EGNVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~---~~~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      ++|+|.|.++ |+...+.   .++.|.|++|+.+|+|.|.|.+.|..
T Consensus        37 ~~i~W~k~~~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~   83 (93)
T d1n26a1          37 ATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYRAGRP   83 (93)
T ss_dssp             SEEEEEEECSSSSCCCEEEEEESSEEEECSCCGGGCEEEEEESSSSC
T ss_pred             ceEEEEEccccccceeeEEecCCCEEEECCCChhcCEEEEEEECCcc
Confidence            5799999877 8776555   57899999999999999999997654

>d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=1.7e-06  Score=52.90  Aligned_cols=29  Identities=34%  Similarity=0.996  Sum_probs=26.8

Q ss_pred             CCccC-CCCCCCeeecCCCCeEEeCCCCcc
Q psy9228         179 EPCYP-GACGDGSCQDVDGAMKCLCPIGTA  207 (834)
Q Consensus       179 ~~C~~-~~C~~g~C~~~~~~~~C~C~~g~~  207 (834)
                      |+|+- +||.||+|.|..++|.|.|..||.
T Consensus         2 dECsignpCGnGTCtNviGgFec~C~~GFe   31 (39)
T d1emoa2           2 DECSVGNPCGNGTCKNVIGGFECTCEEGFE   31 (39)
T ss_dssp             CGGGTTCSSSSSCEEECSSSEEECCSSSSC
T ss_pred             CccccCCccCCceeeecccceEEeecCCcC
Confidence            67875 899999999999999999999996

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=1.4e-06  Score=58.82  Aligned_cols=34  Identities=26%  Similarity=0.651  Sum_probs=29.6

Q ss_pred             CCCCCccC--CCCCCCeeecCCCCeEEeCCCCcccC
Q psy9228         176 VLGEPCYP--GACGDGSCQDVDGAMKCLCPIGTAGK  209 (834)
Q Consensus       176 ~~~~~C~~--~~C~~g~C~~~~~~~~C~C~~g~~G~  209 (834)
                      .++|||+.  .+|.+++|+|..++|+|.|++||.+.
T Consensus         1 TDidEC~~~~~~C~~~~C~Nt~Gsy~C~C~~Gy~~~   36 (44)
T d1lmja1           1 TDIDECRISPDLCGRGQCVNTPGDFECKCDEGYESG   36 (44)
T ss_dssp             CCCCTTTTCSSTTTTSCEEEETTEEEECCCSSEEEC
T ss_pred             CcccccCCCCCCCCCCEeEcCCCCeEEeCCCCCccC
Confidence            37899986  45778999999999999999999865

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.97  E-value=3.1e-06  Score=69.04  Aligned_cols=44  Identities=30%  Similarity=0.621  Sum_probs=38.9

Q ss_pred             CcEEEEecCC-CCCccccCCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYAEGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.++ ++......++.|.|.+|+.+|+|.|+|.+.|..|
T Consensus        35 p~i~W~k~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G   79 (91)
T d1cs6a3          35 PQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKG   79 (91)
T ss_dssp             CEEEEEECCSCCSCCCSBSSSEEEECSCCGGGCEEEEEEEEETTE
T ss_pred             CEEEEEecccccceEeeeeeeEEEeCCCCccCCEEEEEEEEECCC
Confidence            4799999888 7776666789999999999999999999998765

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=1.3e-06  Score=58.89  Aligned_cols=37  Identities=32%  Similarity=0.785  Sum_probs=31.6

Q ss_pred             CCCCCccCCCCC-CCeeecCCCCeEEeCCCCcc--cCccc
Q psy9228         176 VLGEPCYPGACG-DGSCQDVDGAMKCLCPIGTA--GKRCE  212 (834)
Q Consensus       176 ~~~~~C~~~~C~-~g~C~~~~~~~~C~C~~g~~--G~~Ce  212 (834)
                      .++|||+..++. +++|+|..++|.|.|++||+  |..|.
T Consensus         3 vDidEC~~~~~~~~~~C~Nt~Gsy~C~C~~Gy~~~g~~C~   42 (43)
T d1emoa1           3 VDMDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNECV   42 (43)
T ss_dssp             CCCCSSSSTTSCSSSCCCCCSSCCCCCCCTTEEESSSCEE
T ss_pred             cceeccCCcCCCCCCEeECCCCCeEeECCCCcccCCCccc
Confidence            589999987766 68999999999999999997  56664

>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Betacellulin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=2.4e-06  Score=59.34  Aligned_cols=39  Identities=26%  Similarity=0.571  Sum_probs=30.2

Q ss_pred             CCCccCCCCCCCCCCCCEeccCCCCCceEeeCCCCCCCCCCCC
Q psy9228         134 SCNTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFSGDRCSV  176 (834)
Q Consensus       134 ~c~~C~~~~~~pC~n~g~C~~~~~~~~~~C~C~~g~~G~~Ce~  176 (834)
                      .|.++.   .++|.|||.|.... ...++|.|+.||+|.+||.
T Consensus         7 pC~~~~---~~yC~nGgcc~~~~-~~~~~C~C~~gy~G~rCe~   45 (50)
T d1ioxa_           7 RCPKQY---KHYCIKGRCRFVVA-EQTPSCVCDEGYIGARCER   45 (50)
T ss_dssp             ECCGGG---TTSCTTCCEEEETT-TTEEEECCCTTEETTTTCE
T ss_pred             ccCccc---CCCccCCeEEEeCC-CCCcEeECCCCCeeCCCcc
Confidence            344555   78999999996332 3678999999999999985

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=1.1e-06  Score=59.46  Aligned_cols=32  Identities=31%  Similarity=0.752  Sum_probs=27.6

Q ss_pred             CCCCCccC--CCCCCCeeecCCCCeEEeCCCCcc
Q psy9228         176 VLGEPCYP--GACGDGSCQDVDGAMKCLCPIGTA  207 (834)
Q Consensus       176 ~~~~~C~~--~~C~~g~C~~~~~~~~C~C~~g~~  207 (834)
                      +|+|||..  .+|.+++|+|..++|.|.|++||.
T Consensus         1 qDinEC~~~~~~c~~~~C~Nt~Gsy~C~C~~Gy~   34 (43)
T d1uzka2           1 EDIDECQELPGLCQGGKCINTFGSFQCRCPTGYY   34 (43)
T ss_dssp             EECCHHHHCGGGGBTSEEEECSSCEEEECCTTCC
T ss_pred             CCcccccCCCCCcCCCEEECCCCCeEeECCCCCe
Confidence            36899975  457778999999999999999987

>d2i9aa1 g.3.11.1 (A:10-49) Plasminogen activator (urokinase-type) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (urokinase-type)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=3.9e-06  Score=51.73  Aligned_cols=33  Identities=30%  Similarity=0.705  Sum_probs=24.0

Q ss_pred             CCCCCEeccCCC-CCceEeeCCCCCCCCCCCCCC
Q psy9228         146 CINNGLCQDAAT-RIGYTCICPPGFSGDRCSVLG  178 (834)
Q Consensus       146 C~n~g~C~~~~~-~~~~~C~C~~g~~G~~Ce~~~  178 (834)
                      |+|||+|+.--- .+--.|.||.+|.|.+||.+.
T Consensus         4 ClNGG~Cvsyk~FS~I~rC~CPk~f~G~HCEiDt   37 (40)
T d2i9aa1           4 CLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDK   37 (40)
T ss_dssp             CCTTCEEEECSSSTTCEEEECCTTEESTTSCEES
T ss_pred             cccCCEEEEEehhcCCEEecCCcccCceeEEecc
Confidence            899999985321 123578888888888888764

>d2i9aa1 g.3.11.1 (A:10-49) Plasminogen activator (urokinase-type) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (urokinase-type)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=4.2e-06  Score=51.58  Aligned_cols=35  Identities=29%  Similarity=0.652  Sum_probs=27.8

Q ss_pred             CCCCCCeecccCCCCCceeeecCCCCCCCCCccCc
Q psy9228         575 PCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKEN  609 (834)
Q Consensus       575 pC~ngg~C~~~~~~~~~~~C~C~~G~~G~~Ce~~~  609 (834)
                      -|+|||+|+.---.-+--.|.||.+|.|.+||++.
T Consensus         3 ~ClNGG~Cvsyk~FS~I~rC~CPk~f~G~HCEiDt   37 (40)
T d2i9aa1           3 DCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDK   37 (40)
T ss_dssp             CCCTTCEEEECSSSTTCEEEECCTTEESTTSCEES
T ss_pred             ccccCCEEEEEehhcCCEEecCCcccCceeEEecc
Confidence            38999999877543345689999999999999874

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=2e-06  Score=57.76  Aligned_cols=31  Identities=29%  Similarity=0.826  Sum_probs=26.9

Q ss_pred             CCCCccCC--CCCCCeeecCCCCeEEeCCCCcc
Q psy9228         177 LGEPCYPG--ACGDGSCQDVDGAMKCLCPIGTA  207 (834)
Q Consensus       177 ~~~~C~~~--~C~~g~C~~~~~~~~C~C~~g~~  207 (834)
                      |+|||+..  +|.+|+|+|..++|+|.|++||.
T Consensus         1 DidEC~~~~~~C~~~~C~Nt~Gsy~C~C~~Gy~   33 (42)
T d1lmja2           1 DIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQ   33 (42)
T ss_dssp             ECCHHHHCSSTTTTSEEEEETTEEEEESCTTSC
T ss_pred             CccccCCCCCCCCCCEeECCCCCeEEeCCCCCe
Confidence            57899764  47788999999999999999997

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=3.5e-06  Score=68.45  Aligned_cols=44  Identities=25%  Similarity=0.340  Sum_probs=36.3

Q ss_pred             CcEEEEecCC-CCCcccc-CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA-EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~-~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|+|.+. |...... .++.|+|.+|+.+|+|.|.|+++|+.+
T Consensus        34 p~v~W~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g   79 (90)
T d1gsma1          34 ASVQWRGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGR   79 (90)
T ss_dssp             CEEEEESSTTTTCCEEEESSEEEEEECSCCGGGCEEEEEEEEETTE
T ss_pred             cEEEEEEeeeeeeeeeccCceeeEEcCccChhhCCcEEEEEEeCCC
Confidence            4899999888 7544433 467899999999999999999988764

>d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Transforming growth factor alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=3.3e-06  Score=58.24  Aligned_cols=33  Identities=21%  Similarity=0.505  Sum_probs=26.7

Q ss_pred             CCCCCCCCEeccCCCCCceEeeCCCCCCCCCCCC
Q psy9228         143 HNNCINNGLCQDAATRIGYTCICPPGFSGDRCSV  176 (834)
Q Consensus       143 ~~pC~n~g~C~~~~~~~~~~C~C~~g~~G~~Ce~  176 (834)
                      .+.|.|||.|.-. ....++|.|++||+|.+||.
T Consensus        12 ~~yClnGgcc~~~-~~~~~~C~C~~gy~G~RCe~   44 (49)
T d1moxc_          12 TQFCFHGTCRFLV-QEDKPACVCHSGYVGARCEH   44 (49)
T ss_dssp             SCSSTTEEEEEET-TTTEEEEEECTTEESTTSCE
T ss_pred             CCEeeCCeEEecC-CCCCcEeECCCCCEecCCcc
Confidence            7899999988532 23678999999999999975

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=7.1e-06  Score=55.43  Aligned_cols=36  Identities=25%  Similarity=0.580  Sum_probs=29.3

Q ss_pred             CCCCccCC-CCCCCeeecCCCCeEEeCCCCcc----cCccc
Q psy9228         177 LGEPCYPG-ACGDGSCQDVDGAMKCLCPIGTA----GKRCE  212 (834)
Q Consensus       177 ~~~~C~~~-~C~~g~C~~~~~~~~C~C~~g~~----G~~Ce  212 (834)
                      ++|||+.. .|.++.|+|..++|.|.|++||.    |..|.
T Consensus         2 DidEC~~~~~~c~~~C~Nt~G~y~C~C~~Gy~l~~d~~~C~   42 (43)
T d1uzka1           2 DVNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCV   42 (43)
T ss_dssp             CCCGGGSTTSSBTSEEEEETTEEEEECCTTCEECTTSSBEE
T ss_pred             CccccCCCCcCcCCEeECCCCCEEEecCCCCEECCCCCccc
Confidence            78999874 44479999999999999999994    55553

>d1a8da1 b.29.1.6 (A:1-247) Tetanus neurotoxin {Clostridium tetani [TaxId: 1513]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Clostridium neurotoxins, the second last domain
domain: Tetanus neurotoxin
species: Clostridium tetani [TaxId: 1513]

Probab=97.77  E-value=0.00042  Score=67.62  Aligned_cols=151  Identities=17%  Similarity=0.088  Sum_probs=93.0

Q ss_pred             eeeEEcC--Cceeeech-hhhh--hccCcceEEEEEEeCCCCe------------eEEecCCCCCCCCCCcceEEEEEEC
Q psy9228         652 SEVHFLG--EGYVELKK-ELIE--ERRNEETIAFDFVTDDKNA------------LLLWNGQPSYKNGIGREFIAVAVVN  714 (834)
Q Consensus       652 ~~~~F~g--~s~~~~~~-~~~~--~~~~~~~i~~~frT~~~~G------------lLl~~~~~~~~~~~~~~~~~l~l~~  714 (834)
                      .++.|.+  ++++.+.. ....  .....++|+||||+.+...            .+......   ......-+.|.+.+
T Consensus        58 ~a~~f~~~~~~~~~~~~~~~~~~~~~~~~fTis~Wvk~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~  134 (247)
T d1a8da1          58 KAIHLVNNESSEVIVHKAMDIEYNDMFNNFTVSFWLRVPKVSASHLEQYGTNEYSIISSMKKH---SLSIGSGWSVSLKG  134 (247)
T ss_dssp             EEEEEESSTTCCEEEECCGGGTTTTTTSCEEEEEEEECCCCCHHHHHHHTTCEEEEEECCEEC---GGGCEEEEEEEEET
T ss_pred             cEEEEECCCCccEEeecccccccCCCCCCEEEEEEEEcCCCCCcceeEeecCCCceEEeeccc---cCCCCccEEEEEeC
Confidence            3567776  23444321 1111  1236789999999865431            22221111   01124567889999


Q ss_pred             CEEEEEEEcCCcEE-EEE-----eCCceecCCCcEEEEEEEEC-CEEEEEEcCeeeecccCCCCccceecCCceEEcCcC
Q psy9228         715 GYLEYSYDLGDGVV-TIK-----FSKKPVNDGIKHSVNVTRIN-KFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTP  787 (834)
Q Consensus       715 G~l~~~~~~g~~~~-~l~-----~s~~~~nDg~wH~V~i~r~~-~~~~l~VD~~~~~~~~~~~~~~~l~~~~~lyiGG~p  787 (834)
                      +.+.+.+....+.. ...     .+...+.+++||||.+++.+ +.++|+|||..+........ ........+.||...
T Consensus       135 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~W~hia~t~d~~~~~~lYinG~~~~~~~~~~~-~~~~~~~~~~ig~~~  213 (247)
T d1a8da1         135 NNLIWTLKDSAGEVRQITFRDLPDKFNAYLANKWVFITITNDRLSSANLYINGVLMGSAEITGL-GAIREDNNITLKLDR  213 (247)
T ss_dssp             TEEEEEEECTTSCEEEEEEECCSBTTSCSSSSSCEEEEEEECTTSEEEEEETTEEEEEEECTTC-CCCCCCSEEEEEEES
T ss_pred             CeEEEEEEecccCccccccceeccccccccCCcEEEEEEEEeCCCcEEEEECCEEEEeEEeccc-cccCCCCeEEEEEcC
Confidence            99998877655432 111     13457899999999999986 58999999998765433222 223334556666432


Q ss_pred             CCCCCCCCccCCCceEEEEEEEECCce
Q psy9228         788 NMDLMTGGRYVHPMSGLMMNIHIQNKH  814 (834)
Q Consensus       788 ~~~~~~~~~~~~~F~GCi~~v~in~~~  814 (834)
                      .        ....|.|=|.+|+|-++.
T Consensus       214 ~--------~~~~~~G~Idd~~iynra  232 (247)
T d1a8da1         214 C--------NNNNQYVSIDKFRIFCKA  232 (247)
T ss_dssp             C--------CCTTCEEEEEEEEEESSC
T ss_pred             C--------CCCCceEEeeEEEEECCC
Confidence            2        245799999999998764

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=97.73  E-value=1e-05  Score=65.50  Aligned_cols=44  Identities=23%  Similarity=0.375  Sum_probs=37.3

Q ss_pred             CcEEEEecCC-CCCcccc-CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA-EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~-~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.+. |+..+.. .++.|.|.+++.+|+|.|+|.+.|..|
T Consensus        33 p~v~W~~~~~~i~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G   78 (89)
T d1biha4          33 PNVVWSHNAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHG   78 (89)
T ss_dssp             CCCEEEETTEECCSSSEEEETTEEEESSCCSTTCEEEEEEEEETTE
T ss_pred             CEEEEEeCCccCccccEEEeeeeEEECCCChhhCEEEEEEEEECCC
Confidence            4799999666 8776544 577899999999999999999998765

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.73  E-value=1e-05  Score=65.46  Aligned_cols=44  Identities=25%  Similarity=0.449  Sum_probs=37.0

Q ss_pred             CcEEEEecCC--CCCccccCCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG--LPLQRYAEGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~--~~~~~~~~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.+.  ++......++.|+|.+|+.+|+|.|+|.++|..+
T Consensus        33 ~~v~W~k~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G   78 (89)
T d1gl4b_          33 YTLVWTRLHNGKLPSRAMDFNGILTIRNVQPSDAGTYVCTGSNMFA   78 (89)
T ss_dssp             CEEEEEEGGGBCCCTTEEEETTEEEECSCCGGGCEEEEEEEECSSC
T ss_pred             CEEEEecCCceeeccccEeeceEEEEecCCcccCEEEEEEEEECCC
Confidence            4899999777  4444444688999999999999999999998876

>d3btaa1 b.29.1.6 (A:872-1078) Botulinum neurotoxin {Clostridium botulinum, serotype A [TaxId: 1491]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Clostridium neurotoxins, the second last domain
domain: Botulinum neurotoxin
species: Clostridium botulinum, serotype A [TaxId: 1491]

Probab=97.72  E-value=0.00034  Score=66.16  Aligned_cols=129  Identities=9%  Similarity=-0.049  Sum_probs=84.8

Q ss_pred             cCcceEEEEEEeCCCCe--eE--EecCCCCCCCCCCcceEEEEEECCEEEEEEEcCCcEEE-E--E---eCCceecCCCc
Q psy9228         673 RNEETIAFDFVTDDKNA--LL--LWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVT-I--K---FSKKPVNDGIK  742 (834)
Q Consensus       673 ~~~~~i~~~frT~~~~G--lL--l~~~~~~~~~~~~~~~~~l~l~~G~l~~~~~~g~~~~~-l--~---~s~~~~nDg~w  742 (834)
                      ...++|+++||+.....  .+  .+....   .....-++.+.+.++.+.+.+....+... .  .   .....+.+++|
T Consensus        66 ~~~fTis~Wvk~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W  142 (207)
T d3btaa1          66 YENFSTSFWIRIPKYFNSISLNNEYTIIN---CMENNSGWKVSLNYGEIIWTLQDTQEIKQRVVFKYSQMINISDYINRW  142 (207)
T ss_dssp             GSSEEEEEEEECCCCCSSTTTTCEEEEEE---CCSSSCSCEEEEESSEEEEEEECTTCCEEEEEEECCSCCSSCSSTTSE
T ss_pred             CCCEEEEEEEecCCCcccceeeeeeeeec---CCCCcceEEEEeeccceeeEEecCCcceeccccccceeeeeeecCCcE
Confidence            36799999999866432  11  111000   01123457789999999998876554322 1  1   24557999999


Q ss_pred             EEEEEEEEC-CEEEEEEcCeeeecccCCCCccceecCCceEEcCcCCCCCCCCCccCCCceEEEEEEEECCc
Q psy9228         743 HSVNVTRIN-KFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNIHIQNK  813 (834)
Q Consensus       743 H~V~i~r~~-~~~~l~VD~~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~~~~~~~~~~~F~GCi~~v~in~~  813 (834)
                      |||.+++.+ +.++|+|||..+.+....+. ..++....+.+|.-...        ...|.|=|.+|+|-++
T Consensus       143 ~Hva~t~d~~~~~~lYiNG~lv~s~~~s~~-~~~~~~~~~~~g~~~~~--------~~~~~~~id~~riyn~  205 (207)
T d3btaa1         143 IFVTITNNRLNNSKIYINGRLIDQKPISNL-GNIHASNNIMFKLDGCR--------DTHRYIWIKYFNLFDK  205 (207)
T ss_dssp             EEEEEEECTTSEEEEEETTEEEEEEECTTC-CCCCCCSEEEEEEESCC--------CTTCEEEEEEEEEESS
T ss_pred             EEEEEEEcCCCcEEEEECCEEEEeEEecCc-cccccCCcEEEEECCCC--------CCcceEEEeEEEEECc
Confidence            999999986 47999999999876533332 33455567777764443        3457788999999775

>d1b09a_ b.29.1.5 (A:) C-reactive protein (CRP) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Pentraxin (pentaxin)
domain: C-reactive protein (CRP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=0.0003  Score=66.58  Aligned_cols=152  Identities=16%  Similarity=0.127  Sum_probs=93.8

Q ss_pred             CCcccccccCCcc-ccceeEEEEEEEeeCC--CCeeEEEeccCCccccCCCCCeEEEEEECcEEEEEEecccEEEEeeee
Q psy9228         389 QKPLSYLALPTLT-DAHLHFSIELSFKPTD--YNGLIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVGLVVLRSKVT  465 (834)
Q Consensus       389 ~~~~s~l~~~~~~-~~~~~~~i~~~frt~~--~~GlLl~~~~~~~~~~~~~~d~~~l~L~~G~l~~~~~~G~~~i~s~~~  465 (834)
                      .+..+|+.++... .....++|+++||+..  ....+++....     ......+.+....+ ..+.+..+.........
T Consensus        14 ~s~~dYv~l~~~~~~~~~~fTvs~Wvk~~~~~~~~~~~~s~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   87 (206)
T d1b09a_          14 ESDTSYVSLKAPLTKPLKAFTVCLHFYTELSSTRGYSIFSYAT-----KRQDNEILIFWSKD-IGYSFTVGGSEILFEVP   87 (206)
T ss_dssp             CCSSCEEEECCCCCSCBSEEEEEEEEECSGGGTCCEEEEEEEC-----SSCTTSEEEEEETT-TEEEEEETTEEEEEECC
T ss_pred             CCCCCEEEECCCCCCCCcCEEEEEEEEeCCCCCCcceEEEecC-----CCCceeEEEEecCC-ccEEEEeccccEEecCc
Confidence            3456798886543 3346899999999754  23333332211     12344555554443 33344445455566677


Q ss_pred             ecCCCeEEEEEEEECC--eEEEEECCeeeeeeecCCCccccccCCCceeeccccCCCcccCcCcccccCceeEEeeeEEc
Q psy9228         466 LVPHEWVVVTIIKDFK--EGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVL  543 (834)
Q Consensus       466 ~~dg~wH~V~v~~~~~--~~~l~VD~~~~~~~~~~g~~~~~l~~~~~l~iGG~~~~~~~~~~~~~~~~gF~GCi~~v~in  543 (834)
                      +.+++||+|.+.++..  .++|+|||...........  ..+.....++||......   .........|.|-|.+++|-
T Consensus        88 ~~~~~W~Hvavt~d~~~g~~~lYinG~~~~~~~~~~~--~~~~~~~~~~iG~~~~~~---g~~~~~~~~F~G~i~~~~i~  162 (206)
T d1b09a_          88 EVTVAPVHICTSWESASGIVEFWVDGKPRVRKSLKKG--YTVGAEASIILGQEQDSF---GGNFEGSQSLVGDIGNVNMW  162 (206)
T ss_dssp             CCCCSCEEEEEEEETTTCEEEEEETTEECCCEECCTT--CCBCSSCEEEESSCCSBT---TBCCCGGGCCCEEEEEEEEE
T ss_pred             ccCCcEEEEEEEEeccCCeEEEEECCeEEeeecccCC--ceeccCCcEEeccccccc---cccccCCCceeeEEeeEEEE
Confidence            8999999999999865  5899999987765443221  234455678888533311   11122345799999999998


Q ss_pred             Ceeeeecc
Q psy9228         544 GSELDLIN  551 (834)
Q Consensus       544 g~~~~~~~  551 (834)
                      .+.+...+
T Consensus       163 ~raLs~~E  170 (206)
T d1b09a_         163 DFVLSPDE  170 (206)
T ss_dssp             SSCCCHHH
T ss_pred             cccCCHHH
Confidence            87766554

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.64  E-value=1.5e-05  Score=64.36  Aligned_cols=44  Identities=30%  Similarity=0.573  Sum_probs=37.2

Q ss_pred             CcEEEEecCC-CCCcccc--CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA--EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~--~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.+. |....+.  .++.|.|.+|+.+|+|.|.|.+.|..|
T Consensus        31 p~v~W~k~g~~i~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G   77 (89)
T d1cs6a4          31 PAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHG   77 (89)
T ss_dssp             CEEEEEETTEECCCCSSEEEETTEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CEEEEEEeeccccccceeeeeeeeEEEEeecccCCEEEEEEEEeCCC
Confidence            4899999666 7765554  578999999999999999999988765

>d1epwa1 b.29.1.6 (A:862-1079) Botulinum neurotoxin {Clostridium botulinum, serotype B [TaxId: 1491]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Clostridium neurotoxins, the second last domain
domain: Botulinum neurotoxin
species: Clostridium botulinum, serotype B [TaxId: 1491]

Probab=97.63  E-value=0.00045  Score=65.68  Aligned_cols=124  Identities=7%  Similarity=-0.027  Sum_probs=83.7

Q ss_pred             CcceEEEEEEeCCCCe------------eEEecCCCCCCCCCCcceEEEEEECCEEEEEEEcCCcEEE-EE-----eCCc
Q psy9228         674 NEETIAFDFVTDDKNA------------LLLWNGQPSYKNGIGREFIAVAVVNGYLEYSYDLGDGVVT-IK-----FSKK  735 (834)
Q Consensus       674 ~~~~i~~~frT~~~~G------------lLl~~~~~~~~~~~~~~~~~l~l~~G~l~~~~~~g~~~~~-l~-----~s~~  735 (834)
                      ..++|+++||......            ......        ....+.+.+.++.+.+.+....+... ..     ....
T Consensus        62 ~~~Tis~Wv~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (218)
T d1epwa1          62 LDFSVSFWIRIPKYKNDGIQNYIHNEYTIINCMK--------NNSGWKISIRGNRIIWTLIDINGKTKSVFFEYNIREDI  133 (218)
T ss_dssp             CCEEEEEEEECCCCCGGGHHHHHHCEEEEEEEEE--------TTEEEEEEEETTEEEEEEECTTCCEEEEEEECCSSCSS
T ss_pred             CCEEEEEEeccCCCCCcceeEEeccccceecccC--------CCcceEEEEeCCcceEEEEecCCcceeecccccccccc
Confidence            5789999999865322            111111        13456788889999888765443221 11     1334


Q ss_pred             eecCCCcEEEEEEEECCEEEEEEcCeeeecccCCCCccceecCCceEEcCcCCCCCCCCCccCCCceEEEEEEEECCce
Q psy9228         736 PVNDGIKHSVNVTRINKFGSLEVDSVIVGKGESPGSQDVINTRGNIYLGGTPNMDLMTGGRYVHPMSGLMMNIHIQNKH  814 (834)
Q Consensus       736 ~~nDg~wH~V~i~r~~~~~~l~VD~~~~~~~~~~~~~~~l~~~~~lyiGG~p~~~~~~~~~~~~~F~GCi~~v~in~~~  814 (834)
                      .+.+++||||.+++.+..++|+|||..+......+. ..+.....+.+|.-...        ...|.|-|.+|+|-++.
T Consensus       134 ~~~~~~W~hi~~t~d~~~~~iYvNG~l~~~~~~~~~-~~~~~~~~~~~g~~~~~--------~~~~~g~id~v~iynra  203 (218)
T d1epwa1         134 SEYINRWFFVTITNNLNNAKIYINGKLESNTDIKDI-REVIANGEIIFKLDGDI--------DRTQFIWMKYFSIFNTE  203 (218)
T ss_dssp             CSSTTSCEEEEEEECSSEEEEEETTEEEEEEECSSC-CCCCCCSEEEEEEEESC--------CTTCCEEEEEEEEESSC
T ss_pred             cccCCcEEEEEEEECCCEEEEEECCEEEeeeeccCc-ccccCCCcEEEEEecCC--------CCCCceEeEEEEEECCC
Confidence            688999999999999999999999998766433322 22344567888864332        34589999999998764

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=8.2e-06  Score=54.90  Aligned_cols=36  Identities=31%  Similarity=0.697  Sum_probs=30.3

Q ss_pred             CccCCCCCCccCCCceeeecCCCcEEcCCCCCC--CCCc
Q psy9228         608 ENNMCMKGDVCKNGGMCKVTPDSYECLCSLGYA--PPNC  644 (834)
Q Consensus       608 ~~~~C~~~~pC~ngg~C~~~~~~~~C~C~~g~~--G~~C  644 (834)
                      ++|||... ++...++|++.+++|.|.|++||.  |..|
T Consensus         4 DidEC~~~-~~~~~~~C~Nt~Gsy~C~C~~Gy~~~g~~C   41 (43)
T d1emoa1           4 DMDECKEP-DVCKHGQCINTDGSYRCECPFGYILAGNEC   41 (43)
T ss_dssp             CCCSSSST-TSCSSSCCCCCSSCCCCCCCTTEEESSSCE
T ss_pred             ceeccCCc-CCCCCCEeECCCCCeEeECCCCcccCCCcc
Confidence            57899877 666789999999999999999996  5555

>d1saca_ b.29.1.5 (A:) Serum amyloid P component (SAP) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Pentraxin (pentaxin)
domain: Serum amyloid P component (SAP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=0.0007  Score=63.80  Aligned_cols=150  Identities=14%  Similarity=0.095  Sum_probs=91.6

Q ss_pred             CCcccccccCCccc-cceeEEEEEEEeeCCC-CeeEE-EeccCCccccCCCCCeEEEEEECcEEEEEEecccEEEEeeee
Q psy9228         389 QKPLSYLALPTLTD-AHLHFSIELSFKPTDY-NGLIM-YTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVGLVVLRSKVT  465 (834)
Q Consensus       389 ~~~~s~l~~~~~~~-~~~~~~i~~~frt~~~-~GlLl-~~~~~~~~~~~~~~d~~~l~L~~G~l~~~~~~G~~~i~s~~~  465 (834)
                      .+..+|+.++.... ....++|+++||+... .+.+| |....      ....++...-..+...+  ..+...+.....
T Consensus        14 ~~~~dYv~l~~~~~~~~~~fTvs~Wvk~~~~~~~~~~s~~~~~------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~   85 (204)
T d1saca_          14 ESVTDHVNLITPLEKPLQNFTLCFRAYSDLSRAYSLFSYNTQG------RDNELLVYKERVGEYSL--YIGRHKVTSKVI   85 (204)
T ss_dssp             CCSSCEEEECCCCCSCBSEEEEEEEEECCCCSCEEEEEEEETT------EEEEEEEEEEETTEEEE--EETTEEEEEECC
T ss_pred             CCCCcEEEeCCCCCCCCCCEEEEEEEEccCCCCcEEEEEecCC------CCCcceeeccCCceEee--ecccceEEeccc
Confidence            34567988764432 3468999999998664 34443 33221      12222222223444433  334455667778


Q ss_pred             ecCCCeEEEEEEEECC--eEEEEECCeeeeeeecCCCccccccCCCceeeccccCCCcccCcCcccccCceeEEeeeEEc
Q psy9228         466 LVPHEWVVVTIIKDFK--EGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVL  543 (834)
Q Consensus       466 ~~dg~wH~V~v~~~~~--~~~l~VD~~~~~~~~~~g~~~~~l~~~~~l~iGG~~~~~~~~~~~~~~~~gF~GCi~~v~in  543 (834)
                      +.+++||+|.+.++..  .++++|||..........  .........+.||-.....   .........|.|=|.+++|-
T Consensus        86 ~~~~~W~Hv~~t~d~~~g~~~~YiNG~~~~~~~~~~--~~~~~~~~~~~iG~~~~~~---gg~~~~~~~f~G~i~~~~i~  160 (204)
T d1saca_          86 EKFPAPVHICVSWESSSGIAEFWINGTPLVKKGLRQ--GYFVEAQPKIVLGQEQDSY---GGKFDRSQSFVGEIGDLYMW  160 (204)
T ss_dssp             CCSSCCEEEEEEEETTTCEEEEEETTEECCCEECCT--TCCBCSSCEEEESSCCSSS---SCCCCGGGCCCEEEEEEEEE
T ss_pred             ccCCceEEEEEEEecCCCcEEEEECCEEEeeecccc--eeeeecccceecccccccc---CCCCCcccceeEEecceEEE
Confidence            9999999999999865  689999998765433221  1234455567887544321   11122345799999999998


Q ss_pred             Ceeeeecc
Q psy9228         544 GSELDLIN  551 (834)
Q Consensus       544 g~~~~~~~  551 (834)
                      .+.+...+
T Consensus       161 ~~aLs~~E  168 (204)
T d1saca_         161 DSVLPPEN  168 (204)
T ss_dssp             SSCCCHHH
T ss_pred             cccCCHHH
Confidence            87776544

>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epiregulin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=2.1e-05  Score=53.34  Aligned_cols=35  Identities=31%  Similarity=0.599  Sum_probs=28.8

Q ss_pred             CccCCCCCCCeee--cCCCCeEEeCCCCcccCccccc
Q psy9228         180 PCYPGACGDGSCQ--DVDGAMKCLCPIGTAGKRCEQK  214 (834)
Q Consensus       180 ~C~~~~C~~g~C~--~~~~~~~C~C~~g~~G~~Ce~~  214 (834)
                      ++..++|.||.|.  ...+.+.|.|+.||+|.+||.-
T Consensus         8 ~~~~~yC~nG~C~~~~~~~~~~C~C~~gY~G~RCe~~   44 (46)
T d1k36a_           8 SDMNGYCLHGQCIYLVDMSQNYCRCEVGYTGVRCEHF   44 (46)
T ss_dssp             TTCCSSCSSEEEEEETTTTEEEEEECTTCSSTTSCCC
T ss_pred             CcCCCcCcCCEEEEeCCCCccEeECCCCceecCceee
Confidence            3445899999886  4457899999999999999863

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=2.6e-05  Score=64.58  Aligned_cols=44  Identities=25%  Similarity=0.542  Sum_probs=35.2

Q ss_pred             CcEEEEecCC-CCCccc--c----CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRY--A----EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~--~----~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|.|.|.+. ++....  .    .+++|+|.+|+.+|+|.|.|.+.|..+
T Consensus        33 ~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g   83 (101)
T d1iray1          33 GTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSY   83 (101)
T ss_dssp             SEEEEECSSTTSBCCCCTTSSEEEETTEEEETTCCGGGCEEEEEEEEETTE
T ss_pred             ceEEEEECCcccccccccceEEeccCCEEEeccceecCCEEEEEEEECCCC
Confidence            5899999776 543222  1    478999999999999999999987765

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=3.7e-05  Score=62.36  Aligned_cols=44  Identities=27%  Similarity=0.350  Sum_probs=35.1

Q ss_pred             CcEEEEecCC-CCCcccc----CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA----EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~----~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      +.+.|.|.+. |......    .++.|+|.+|+.+|+|.|+|.+.+..+
T Consensus        26 ~~v~W~~~g~~l~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~A~n~~g   74 (92)
T d1olza1          26 ARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVK   74 (92)
T ss_dssp             CEEEEEESSSBCCCCSSSBCCTTTTCEEECSCCGGGCEEEEEEEEEECS
T ss_pred             CceeeecCcccceeeeeeeecceeeEEEECCCCHHHCcEEEEEEEEcCC
Confidence            5899999777 5543222    578999999999999999999987654

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=97.52  E-value=3.7e-05  Score=62.76  Aligned_cols=43  Identities=16%  Similarity=0.342  Sum_probs=35.4

Q ss_pred             cEEEEecCC-CCCcccc-----CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           3 YIKWSRADG-LPLQRYA-----EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         3 ~~~w~~~~~-~~~~~~~-----~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .|.|.|.+. |+.....     .++.|.|.+|+.+|+|.|.|.+.|..|
T Consensus        34 ~v~W~~~g~~l~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G   82 (94)
T d1biha1          34 KYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPAG   82 (94)
T ss_dssp             EEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEEETTE
T ss_pred             EEEEEeeeeeeeeecceeeecccceEEEEeccChhcCeEEEEEEEeCCC
Confidence            699999666 7654332     468999999999999999999998765

>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Betacellulin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=2.3e-05  Score=54.25  Aligned_cols=35  Identities=23%  Similarity=0.488  Sum_probs=28.2

Q ss_pred             CCCCCCCCCeecccCCCCCceeeecCCCCCCCCCccC
Q psy9228         572 APKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKE  608 (834)
Q Consensus       572 ~~~pC~ngg~C~~~~~~~~~~~C~C~~G~~G~~Ce~~  608 (834)
                      ..++|+|||.|.....  ..+.|.|+.||+|.+||..
T Consensus        12 ~~~yC~nGgcc~~~~~--~~~~C~C~~gy~G~rCe~~   46 (50)
T d1ioxa_          12 YKHYCIKGRCRFVVAE--QTPSCVCDEGYIGARCERV   46 (50)
T ss_dssp             GTTSCTTCCEEEETTT--TEEEECCCTTEETTTTCEE
T ss_pred             cCCCccCCeEEEeCCC--CCcEeECCCCCeeCCCccc
Confidence            3579999999964433  3899999999999999864

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.46  E-value=3.9e-05  Score=62.31  Aligned_cols=44  Identities=25%  Similarity=0.446  Sum_probs=34.7

Q ss_pred             CcEEEEecCC-CCCcccc-----CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA-----EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~-----~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .+|+|.|.++ |......     .++.|.|.+++.+|+|.|.|.+.|..+
T Consensus        31 p~v~W~~~~~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~   80 (92)
T d1epfa2          31 PTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILAR   80 (92)
T ss_dssp             CEEEEEETTEEGGGGCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGG
T ss_pred             CeEEEEEcCcccccccceeeeeeeeeeEEECCCCHHhCEEEEEEEEECcC
Confidence            4799999777 5443322     467899999999999999999987543

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=97.44  E-value=5.7e-05  Score=61.99  Aligned_cols=44  Identities=18%  Similarity=0.324  Sum_probs=35.1

Q ss_pred             CcEEEEecCC-CCCcccc--------CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA--------EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~--------~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.+. |......        ....|+|++++.+|+|.|.|.+.|..+
T Consensus        33 ~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G   85 (97)
T d1biha3          33 GYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVG   85 (97)
T ss_dssp             CCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSS
T ss_pred             CEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCC
Confidence            4799999766 6543221        356899999999999999999998775

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=97.42  E-value=4.9e-05  Score=61.56  Aligned_cols=44  Identities=16%  Similarity=0.381  Sum_probs=36.4

Q ss_pred             CcEEEEecCC-CCCcccc------CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA------EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~------~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|.|.|.+. |....+.      ....|.|.+|+.+|+|.|.|.+.|..|
T Consensus        29 p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G   79 (91)
T d1tnna_          29 PTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEG   79 (91)
T ss_dssp             CCCEEESSSSTTCSSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSC
T ss_pred             CeEEEEEeecccccccceeeeeecceeEEeecCCCHHHCEEEEEEEEECCC
Confidence            4799999666 7665443      367899999999999999999998876

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=4e-05  Score=63.53  Aligned_cols=44  Identities=18%  Similarity=0.298  Sum_probs=35.1

Q ss_pred             CcEEEEecCC-CCCcccc---CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA---EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~---~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .+|.|.|++. |+.+...   .++.|.|.+++.+|+|.|+|.+.|..+
T Consensus        35 P~i~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~   82 (103)
T d1iray2          35 PKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYL   82 (103)
T ss_dssp             CCCEEEETTEECCCCSSSEEEETTEEEESSCCGGGCEEEEEEEEEEET
T ss_pred             CEEEEEECCccccCCCcEEEecCCEEEEcccccccCcEEEEEEEECcC
Confidence            3799999555 7654332   578999999999999999999987554

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.41  E-value=6.6e-05  Score=61.45  Aligned_cols=44  Identities=34%  Similarity=0.604  Sum_probs=36.8

Q ss_pred             CcEEEEecCC-CCCcccc----CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA----EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~----~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|.|.|.+. |+...+.    .++.|+|.+|+.+|+|.|.|.+.|..+
T Consensus        32 ~~v~W~~~~~~l~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g   80 (96)
T d1l6za2          32 ANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVS   80 (96)
T ss_dssp             CEEEEEETTEECCCCTTEEEETTTTEEEECSCCGGGCEEEEEEEESSSC
T ss_pred             CCEEEEEeeeecccccceeccCCceEEEEeccchhhceEEEEEEEeCCC
Confidence            5799999666 8776544    567999999999999999999988754

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=4e-05  Score=61.98  Aligned_cols=44  Identities=9%  Similarity=0.219  Sum_probs=34.8

Q ss_pred             CcEEEEecCC-CCC-cccc--CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPL-QRYA--EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~-~~~~--~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|.|.|.++ +.. ....  ..+.|.|.+|+.+|+|.|.|.+.|..+
T Consensus        31 p~i~W~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g   78 (90)
T d1vcaa2          31 PFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESR   78 (90)
T ss_dssp             CEEEEEETTCCCCSSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTE
T ss_pred             ceEEEEecCccceeeeeeeecCCcEEEEecccccccceEEEEEEeCCC
Confidence            5899999777 333 2222  467899999999999999999988765

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=4e-05  Score=51.49  Aligned_cols=34  Identities=35%  Similarity=0.867  Sum_probs=28.0

Q ss_pred             CccCCCCC-CccCCCceeeecCCCcEEcCCCCCCCC
Q psy9228         608 ENNMCMKG-DVCKNGGMCKVTPDSYECLCSLGYAPP  642 (834)
Q Consensus       608 ~~~~C~~~-~pC~ngg~C~~~~~~~~C~C~~g~~G~  642 (834)
                      +||||... .+|. .++|++.+++|+|.|++||.+.
T Consensus         2 DidEC~~~~~~C~-~~~C~Nt~Gsy~C~C~~Gy~~~   36 (44)
T d1lmja1           2 DIDECRISPDLCG-RGQCVNTPGDFECKCDEGYESG   36 (44)
T ss_dssp             CCCTTTTCSSTTT-TSCEEEETTEEEECCCSSEEEC
T ss_pred             cccccCCCCCCCC-CCEeEcCCCCeEEeCCCCCccC
Confidence            67899754 3576 4899999999999999999764

>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=2.5e-05  Score=51.00  Aligned_cols=31  Identities=29%  Similarity=0.759  Sum_probs=25.9

Q ss_pred             CCCCccC-CCCCCCeeecCCCCeEEeCCCCccc
Q psy9228         177 LGEPCYP-GACGDGSCQDVDGAMKCLCPIGTAG  208 (834)
Q Consensus       177 ~~~~C~~-~~C~~g~C~~~~~~~~C~C~~g~~G  208 (834)
                      ++|||+. ++|. ..|+|..++|+|.|++||+.
T Consensus         1 DidEC~~~~~C~-~~C~N~~Gsy~C~C~~Gy~l   32 (40)
T d1dx5i3           1 DIDECENGGFCS-GVCHNLPGTFECICGPDSAL   32 (40)
T ss_dssp             ECCHHHHCSSCS-SEEEECSSSEEEEECSSSSC
T ss_pred             CccccCCCcCcc-CEeeCCCCCeEeECCCCCee
Confidence            4788875 5664 59999999999999999985

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=6.3e-05  Score=49.90  Aligned_cols=34  Identities=29%  Similarity=0.781  Sum_probs=26.9

Q ss_pred             CCCccC-CCCCCCeeecCCCCeEEeCCCCcc----cCccc
Q psy9228         178 GEPCYP-GACGDGSCQDVDGAMKCLCPIGTA----GKRCE  212 (834)
Q Consensus       178 ~~~C~~-~~C~~g~C~~~~~~~~C~C~~g~~----G~~Ce  212 (834)
                      +|||+. ++|. ..|+|..++|+|.|++||.    |+.|+
T Consensus         1 idEC~~~~~C~-~~C~n~~Gsy~C~C~~Gy~L~~d~~~C~   39 (41)
T d1i0ua2           1 IDECQDPDTCS-QLCVNLEGGYKCQCEEGFQLDPHTKACK   39 (41)
T ss_dssp             CCTTTTTTSCS-SCEECSSSCCEECCCTTEEECTTTCCEE
T ss_pred             CccCCCCCCCC-CEeECCCCCEEeECCCCCeECCCCCccc
Confidence            578864 4553 5899999999999999997    66675

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=6.5e-05  Score=50.54  Aligned_cols=32  Identities=34%  Similarity=0.803  Sum_probs=26.4

Q ss_pred             CccCCCCCCccCCCceeeecCCCcEEcCCCCCC
Q psy9228         608 ENNMCMKGDVCKNGGMCKVTPDSYECLCSLGYA  640 (834)
Q Consensus       608 ~~~~C~~~~pC~ngg~C~~~~~~~~C~C~~g~~  640 (834)
                      +||||.....|. .+.|++.+++|.|.|++||.
T Consensus         2 DidEC~~~~~~c-~~~C~Nt~G~y~C~C~~Gy~   33 (43)
T d1uzka1           2 DVNECLDPTTCI-SGNCVNTPGSYICDCPPDFE   33 (43)
T ss_dssp             CCCGGGSTTSSB-TSEEEEETTEEEEECCTTCE
T ss_pred             CccccCCCCcCc-CCEeECCCCCEEEecCCCCE
Confidence            578997664553 58999999999999999993

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.31  E-value=8.6e-05  Score=61.89  Aligned_cols=44  Identities=18%  Similarity=0.243  Sum_probs=33.9

Q ss_pred             CcEEEEecCC-CCC--cccc----CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPL--QRYA----EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~--~~~~----~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.+. +..  ..+.    .++.|.|.+|+.+|+|.|.|.++|..+
T Consensus        35 ~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g   85 (105)
T d1cs6a2          35 LSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHID   85 (105)
T ss_dssp             CEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEET
T ss_pred             CEEEEEEeeccccccccceeeeecCCCEEeecccccccCcEEEEEEEECCC
Confidence            4799999666 432  2111    477899999999999999999987654

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=0.00012  Score=60.53  Aligned_cols=44  Identities=18%  Similarity=0.273  Sum_probs=35.5

Q ss_pred             CcEEEEecCC-CCCcccc------CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA------EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~------~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .+|.|.|.+. |....+.      ....|+|.+++.+|+|.|.|.+.|..|
T Consensus        30 p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G   80 (101)
T d2cqva1          30 ITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLG   80 (101)
T ss_dssp             CEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSC
T ss_pred             CEEEEEeCceeeccCCcEEEEEecceeEEEEeeCCcccCEEEEEEEEECCC
Confidence            4899999777 7654443      234799999999999999999998876

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=97.30  E-value=7.1e-05  Score=61.39  Aligned_cols=44  Identities=14%  Similarity=0.351  Sum_probs=35.5

Q ss_pred             CcEEEEecCC-CCCcccc-------CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA-------EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~-------~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.+. |....+.       ....|.|.+++.+|+|.|.|.+.|..|
T Consensus        35 p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G   86 (97)
T d3dara1          35 PTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYG   86 (97)
T ss_dssp             CEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTE
T ss_pred             CEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCC
Confidence            4799999666 7654333       246999999999999999999998765

>d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Transforming growth factor alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=5.4e-05  Score=52.03  Aligned_cols=34  Identities=24%  Similarity=0.549  Sum_probs=27.4

Q ss_pred             CCCCCCCCeecccCCCCCceeeecCCCCCCCCCccC
Q psy9228         573 PKPCQNYGICYPTDTSERGYNCSCLTGYSGDHCEKE  608 (834)
Q Consensus       573 ~~pC~ngg~C~~~~~~~~~~~C~C~~G~~G~~Ce~~  608 (834)
                      .+.|.|||.|.....  ..++|.|++||+|.+||..
T Consensus        12 ~~yClnGgcc~~~~~--~~~~C~C~~gy~G~RCe~~   45 (49)
T d1moxc_          12 TQFCFHGTCRFLVQE--DKPACVCHSGYVGARCEHA   45 (49)
T ss_dssp             SCSSTTEEEEEETTT--TEEEEEECTTEESTTSCEE
T ss_pred             CCEeeCCeEEecCCC--CCcEeECCCCCEecCCccc
Confidence            578999999943332  3899999999999999964

>d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=7.8e-05  Score=45.46  Aligned_cols=31  Identities=39%  Similarity=1.002  Sum_probs=26.7

Q ss_pred             cCCCCCCccCCCceeeecCCCcEEcCCCCCCC
Q psy9228         610 NMCMKGDVCKNGGMCKVTPDSYECLCSLGYAP  641 (834)
Q Consensus       610 ~~C~~~~pC~ngg~C~~~~~~~~C~C~~g~~G  641 (834)
                      |+|.-.+||.| |+|.+..++|.|.|..||..
T Consensus         2 dECsignpCGn-GTCtNviGgFec~C~~GFep   32 (39)
T d1emoa2           2 DECSVGNPCGN-GTCKNVIGGFECTCEEGFEP   32 (39)
T ss_dssp             CGGGTTCSSSS-SCEEECSSSEEECCSSSSCC
T ss_pred             CccccCCccCC-ceeeecccceEEeecCCcCC
Confidence            56766679986 89999999999999999963

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.25  E-value=6.7e-05  Score=60.98  Aligned_cols=44  Identities=20%  Similarity=0.341  Sum_probs=35.7

Q ss_pred             CcEEEEecCC-CCCcccc------CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA------EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~------~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++++|.|.+. |....+.      ....|.|.+++.+|+|.|+|.++|..|
T Consensus        32 p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G   82 (93)
T d1wiua_          32 PTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELG   82 (93)
T ss_dssp             CEEEEECSSSSCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEETTE
T ss_pred             CeEEEEeeeeeceeeeeeeecccccceeeccccccccccEEEEEEEEECCC
Confidence            4799999777 6554444      245899999999999999999998876

>d1xdtr_ g.3.11.1 (R:) Heparin-binding epidermal growth factor, HBEGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heparin-binding epidermal growth factor, HBEGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=5.7e-05  Score=49.43  Aligned_cols=33  Identities=36%  Similarity=0.922  Sum_probs=26.4

Q ss_pred             CCCCCCCCEeccCCCCCceEeeCCCCCCCCCCCC
Q psy9228         143 HNNCINNGLCQDAATRIGYTCICPPGFSGDRCSV  176 (834)
Q Consensus       143 ~~pC~n~g~C~~~~~~~~~~C~C~~g~~G~~Ce~  176 (834)
                      .+-|.| |+|.-....+.+.|.|+.||+|.+||.
T Consensus         7 ~~yCih-G~C~~i~~l~~~~C~C~~gY~G~RCq~   39 (41)
T d1xdtr_           7 KDFCIH-GECKYVKELRAPSCICHPGYHGERCHG   39 (41)
T ss_dssp             TTCCSS-EEECCBGGGTBCCEEECTTEESTTCCE
T ss_pred             CCEeEC-cEEeecCcCCCceeECCCCCeecCccc
Confidence            567998 999755545778899999999999974

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.22  E-value=7.6e-05  Score=61.19  Aligned_cols=44  Identities=18%  Similarity=0.318  Sum_probs=35.0

Q ss_pred             CcEEEEecCC-CCCcccc----C--CCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA----E--GNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~----~--~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.+. |....+.    .  ...|+|.+++.+|+|.|+|.+.|..|
T Consensus        31 p~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G   81 (97)
T d1koaa1          31 PVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYG   81 (97)
T ss_dssp             CEEEEEETTEECCSBTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEEETTE
T ss_pred             CEEEEEEeeeccceeeEEEEEecCCeeEEEeCCCceecCEEEEEEEEECCC
Confidence            4799999666 7665433    2  23699999999999999999988765

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.00014  Score=51.45  Aligned_cols=37  Identities=24%  Similarity=0.493  Sum_probs=28.3

Q ss_pred             CCCCCccCC--CCC-C------CeeecCCCCeEEeCCCCcc----cCccc
Q psy9228         176 VLGEPCYPG--ACG-D------GSCQDVDGAMKCLCPIGTA----GKRCE  212 (834)
Q Consensus       176 ~~~~~C~~~--~C~-~------g~C~~~~~~~~C~C~~g~~----G~~Ce  212 (834)
                      +|+|||...  .|. +      ..|+|+.++|+|.|++||+    |..|+
T Consensus         2 vDidEC~~~~~~c~~~~~~~c~~~C~Nt~GsY~C~C~~Gy~l~~d~~tC~   51 (53)
T d1apqa_           2 VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSCQ   51 (53)
T ss_dssp             CSCCTTTCSTTTCCCSSSCTTSSEEEEETTEEEEECSTTCEECTTSSCEE
T ss_pred             eecccccCCCCCcccCCCCCccCEeEcCCCCeEeECCCCCeECCCCCcee
Confidence            578888763  232 2      3799999999999999996    55665

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.15  E-value=0.00015  Score=59.68  Aligned_cols=44  Identities=16%  Similarity=0.397  Sum_probs=34.1

Q ss_pred             CcEEEEecCC-CCCcccc--------CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA--------EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~--------~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.+. |......        ....|.|.+|+.+|+|.|.|.++|..|
T Consensus        35 p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G   87 (100)
T d1qz1a3          35 PTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAG   87 (100)
T ss_dssp             CEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTE
T ss_pred             CEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEEEEEECCC
Confidence            4799999655 6543221        357899999999999999999998765

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=0.00011  Score=48.61  Aligned_cols=35  Identities=26%  Similarity=0.769  Sum_probs=27.8

Q ss_pred             ccCCCCCCccCCCceeeecCCCcEEcCCCCCC----CCCcc
Q psy9228         609 NNMCMKGDVCKNGGMCKVTPDSYECLCSLGYA----PPNCA  645 (834)
Q Consensus       609 ~~~C~~~~pC~ngg~C~~~~~~~~C~C~~g~~----G~~Ce  645 (834)
                      +|+|....+|.  ..|++.+++|+|.|++||.    |..|+
T Consensus         1 idEC~~~~~C~--~~C~n~~Gsy~C~C~~Gy~L~~d~~~C~   39 (41)
T d1i0ua2           1 IDECQDPDTCS--QLCVNLEGGYKCQCEEGFQLDPHTKACK   39 (41)
T ss_dssp             CCTTTTTTSCS--SCEECSSSCCEECCCTTEEECTTTCCEE
T ss_pred             CccCCCCCCCC--CEeECCCCCEEeECCCCCeECCCCCccc
Confidence            46776655785  4899999999999999987    55664

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=97.12  E-value=0.00012  Score=60.54  Aligned_cols=44  Identities=23%  Similarity=0.354  Sum_probs=35.2

Q ss_pred             CcEEEEecCC-CCCcccc-----C--CCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA-----E--GNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~-----~--~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.+. |..+.+.     .  ...|.|.+++.+|+|.|.|.+.|..|
T Consensus        38 p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G   89 (102)
T d1fhga_          38 PEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLG   89 (102)
T ss_dssp             CEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CeEEEEeeeccccceeeEeEEEecCceeeeEecCCCHHhCEEEEEEEEECCc
Confidence            4899999666 7665433     1  24799999999999999999998776

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=97.12  E-value=0.00015  Score=59.50  Aligned_cols=44  Identities=16%  Similarity=0.151  Sum_probs=34.8

Q ss_pred             CcEEEEecCC-CCCcccc-----CCC--eEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA-----EGN--VLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~-----~~~--~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.+. |....+.     .++  .|+|.+++.+|+|.|.|.+.|..|
T Consensus        34 p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G   85 (98)
T d1g1ca_          34 PECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAG   85 (98)
T ss_dssp             CEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTE
T ss_pred             CeEEEEeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEEEEECCc
Confidence            5899999665 7654332     233  799999999999999999998776

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.11  E-value=0.00015  Score=59.34  Aligned_cols=44  Identities=34%  Similarity=0.644  Sum_probs=33.9

Q ss_pred             CcEEEEecCC--CCC-cccc-------CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG--LPL-QRYA-------EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~--~~~-~~~~-------~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|.|.|.+|  +.. ..+.       ....|.|.+++.+|+|.|.|.++|..+
T Consensus        31 ~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G   84 (97)
T d1epfa1          31 KDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDG   84 (97)
T ss_dssp             CEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTT
T ss_pred             CEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEEeCCC
Confidence            4799999877  333 2221       235799999999999999999988765

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.00014  Score=58.74  Aligned_cols=44  Identities=18%  Similarity=0.419  Sum_probs=34.6

Q ss_pred             CcEEEEecCC-CCCcccc-----C---CCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA-----E---GNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~-----~---~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|.|.|.+. |+...+.     .   ...|.|.+++.+|+|.|.|.++|..+
T Consensus        26 p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G   78 (91)
T d1rhfa1          26 PDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGE   78 (91)
T ss_dssp             CCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTT
T ss_pred             ceEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCC
Confidence            4899999655 7664432     1   24799999999999999999998765

>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=5.2e-05  Score=49.46  Aligned_cols=31  Identities=32%  Similarity=0.892  Sum_probs=26.3

Q ss_pred             ccCCCCCCccCCCceeeecCCCcEEcCCCCCCC
Q psy9228         609 NNMCMKGDVCKNGGMCKVTPDSYECLCSLGYAP  641 (834)
Q Consensus       609 ~~~C~~~~pC~ngg~C~~~~~~~~C~C~~g~~G  641 (834)
                      +|||....||.  ..|++.+++|+|.|++||+.
T Consensus         2 idEC~~~~~C~--~~C~N~~Gsy~C~C~~Gy~l   32 (40)
T d1dx5i3           2 IDECENGGFCS--GVCHNLPGTFECICGPDSAL   32 (40)
T ss_dssp             CCHHHHCSSCS--SEEEECSSSEEEEECSSSSC
T ss_pred             ccccCCCcCcc--CEeeCCCCCeEeECCCCCee
Confidence            56776656886  59999999999999999985

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=6.6e-05  Score=50.39  Aligned_cols=32  Identities=31%  Similarity=0.781  Sum_probs=25.9

Q ss_pred             CccCCCCC-CccCCCceeeecCCCcEEcCCCCCC
Q psy9228         608 ENNMCMKG-DVCKNGGMCKVTPDSYECLCSLGYA  640 (834)
Q Consensus       608 ~~~~C~~~-~pC~ngg~C~~~~~~~~C~C~~g~~  640 (834)
                      +||+|... .+|.+ ++|++.+++|.|.|++||.
T Consensus         2 DinEC~~~~~~c~~-~~C~Nt~Gsy~C~C~~Gy~   34 (43)
T d1uzka2           2 DIDECQELPGLCQG-GKCINTFGSFQCRCPTGYY   34 (43)
T ss_dssp             ECCHHHHCGGGGBT-SEEEECSSCEEEECCTTCC
T ss_pred             CcccccCCCCCcCC-CEEECCCCCeEeECCCCCe
Confidence            56788643 35764 6999999999999999997

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=0.00017  Score=57.15  Aligned_cols=40  Identities=23%  Similarity=0.483  Sum_probs=32.6

Q ss_pred             CcEEEEecCC-CCCccccCCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYAEGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|.|.|.++ +    ...+..|+|.+|+.+|+|.|.|.++|..+
T Consensus        29 P~i~W~~~~~~~----~~~~~~l~i~~v~~~DsG~Y~C~a~N~~g   69 (84)
T d2nxyb2          29 PSVQCRSPRGKN----IQGGKTLSVSQLELQDSGTWTCTVLQNQK   69 (84)
T ss_dssp             CEEEEECTTCCE----EEESSEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             hheEEEeecccc----eeeeeeeeeeecccccccEEEEEEEeCCC
Confidence            5899999554 2    12467899999999999999999988765

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=8.1e-05  Score=49.63  Aligned_cols=32  Identities=34%  Similarity=0.834  Sum_probs=25.1

Q ss_pred             ccCCCCC-CccCCCceeeecCCCcEEcCCCCCCC
Q psy9228         609 NNMCMKG-DVCKNGGMCKVTPDSYECLCSLGYAP  641 (834)
Q Consensus       609 ~~~C~~~-~pC~ngg~C~~~~~~~~C~C~~g~~G  641 (834)
                      +|||... .+|. +|.|++.+++|+|.|++||.-
T Consensus         2 idEC~~~~~~C~-~~~C~Nt~Gsy~C~C~~Gy~l   34 (42)
T d1lmja2           2 IDECQRDPLLCR-GGVCHNTEGSYRCECPPGHQL   34 (42)
T ss_dssp             CCHHHHCSSTTT-TSEEEEETTEEEEESCTTSCC
T ss_pred             ccccCCCCCCCC-CCEeECCCCCeEEeCCCCCeE
Confidence            5666543 2565 579999999999999999973

>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.00  E-value=0.00017  Score=48.92  Aligned_cols=35  Identities=23%  Similarity=0.575  Sum_probs=24.7

Q ss_pred             CCCccCCC---CC-CCeeecCCCCeEEeCCCCcc----cCccc
Q psy9228         178 GEPCYPGA---CG-DGSCQDVDGAMKCLCPIGTA----GKRCE  212 (834)
Q Consensus       178 ~~~C~~~~---C~-~g~C~~~~~~~~C~C~~g~~----G~~Ce  212 (834)
                      ||||+..+   +. ...|+|..++|+|.|++||.    |+.|+
T Consensus         1 IdEC~~~~~~~~~C~~~C~Nt~gsy~C~C~~Gy~L~~d~~tC~   43 (45)
T d1nt0a3           1 VDECRTSLGDSVPCDHYCHNYLGGYYCSCRVGYILHQNKHTCS   43 (45)
T ss_dssp             CCTTC-------CCSSEEEEETTEEEEECCTTEEECTTSSCEE
T ss_pred             CcCCccCCCCcCCCCCEeecCCCCEEEeCCCCCEECCCCCccc
Confidence            57887643   22 25899999999999999995    55554

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.00036  Score=57.76  Aligned_cols=44  Identities=18%  Similarity=0.353  Sum_probs=34.9

Q ss_pred             CcEEEEecCC-CCCcccc-------------CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA-------------EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~-------------~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.+. ++...+.             ....|.|.+++.+|+|.|.|.++|..|
T Consensus        33 p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G   90 (104)
T d1nbqa2          33 SEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYG   90 (104)
T ss_dssp             CEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSS
T ss_pred             CEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEEEEEEEECCC
Confidence            4799999777 6554322             135799999999999999999998765

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=96.98  E-value=0.00017  Score=57.78  Aligned_cols=42  Identities=14%  Similarity=0.179  Sum_probs=33.0

Q ss_pred             CcEEEEecCC-CCCccccCCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYAEGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .++.|.|++. +..  ...++.|.|.+|+.+|+|.|.|.+.|..+
T Consensus        31 ~~~~W~k~g~~~~~--~~~~~~l~i~~v~~~dsG~Y~C~a~n~~g   73 (88)
T d2fcba2          31 VKVTFFQNGKSKKF--SRSDPNFSIPQANHSHSGDYHCTGNIGYT   73 (88)
T ss_dssp             EEEEEEETTEEEEE--ESSCCEEEETTCCGGGCEEEEEEEEETTE
T ss_pred             cEEEEEeecccccc--cccccccccCccCHHHCCeEEEEEEeCCC
Confidence            3799999544 422  23467899999999999999999987754

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.00017  Score=59.69  Aligned_cols=44  Identities=16%  Similarity=0.340  Sum_probs=34.9

Q ss_pred             CcEEEEecCC-CCCcccc-------C----CCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA-------E----GNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~-------~----~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.+. |..+.+.       .    ...|+|.+++.+|+|.|+|.++|..|
T Consensus        31 P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G   86 (103)
T d1wwbx_          31 PALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYG   86 (103)
T ss_dssp             CEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSC
T ss_pred             CEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEEEEEeccCC
Confidence            5899999665 7654332       1    24799999999999999999998876

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.00025  Score=58.81  Aligned_cols=44  Identities=18%  Similarity=0.416  Sum_probs=33.1

Q ss_pred             CcEEEEecCC-CCCcccc-------CC----CeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA-------EG----NVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~-------~~----~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .+|.|.|.++ ++.....       .+    ..|+|.+|+.+|+|.|.|.+.|..+
T Consensus        34 P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G   89 (104)
T d2aw2a1          34 PHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQSN   89 (104)
T ss_dssp             CEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEEEEcCCC
Confidence            4799999877 5432211       11    2599999999999999999988765

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.00046  Score=55.88  Aligned_cols=43  Identities=26%  Similarity=0.531  Sum_probs=32.5

Q ss_pred             CCcEEEEecCC-CC-Ccccc----CC--CeEEEcccCCCCCeeEEEEEcCC
Q psy9228           1 NAYIKWSRADG-LP-LQRYA----EG--NVLRITNARLQDSGKYKCEIQGH   43 (834)
Q Consensus         1 ~~~~~w~~~~~-~~-~~~~~----~~--~~l~~~~~~~~d~g~y~c~~~~~   43 (834)
                      +++|+|.|.+. |. .+.+.    .+  ..|.|.+++.+|+|.|+|.+.+.
T Consensus        34 ~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~   84 (94)
T d1pd6a_          34 DAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGGE   84 (94)
T ss_dssp             SSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEETTE
T ss_pred             CceEEEEEcCccceeeeeeEeeeccCCeEEeecCCCCceecEEEEEEEeeE
Confidence            35799999777 54 33332    22  36999999999999999999654

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=96.86  E-value=0.00018  Score=57.74  Aligned_cols=42  Identities=19%  Similarity=0.301  Sum_probs=32.5

Q ss_pred             CcEEEEecCC-CCCccccCCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYAEGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .++.|.|++. +..  ...+..|.|++|+.+|+|.|.|.+.+..+
T Consensus        33 ~~~~W~kng~~~~~--~~~~~~l~I~~v~~~dsG~Y~C~a~n~~~   75 (89)
T d1fnla2          33 HKVTYLQNGKDRKY--FHHNSDFHIPKATLKDSGSYFCRGLVGSK   75 (89)
T ss_dssp             EEEEEEETTEEEEE--EEECCCEEESSCCGGGCEEEEEEEEETTE
T ss_pred             cEEEEEEcccccce--eccccccEECccceeccceEEEEEEeCCC
Confidence            3799999544 432  22456899999999999999999987654

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.86  E-value=0.00039  Score=58.18  Aligned_cols=44  Identities=18%  Similarity=0.246  Sum_probs=32.7

Q ss_pred             CcEEEEecCC-CCCcccc--------------CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA--------------EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~--------------~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.+. +......              ....|.|.+|+.+|+|.|+|.++|..|
T Consensus        33 ~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G   91 (110)
T d1f97a2          33 SEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYG   91 (110)
T ss_dssp             CEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSS
T ss_pred             CEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECCC
Confidence            5899999665 4332111              245899999999999999999998765

>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.00032  Score=47.49  Aligned_cols=35  Identities=23%  Similarity=0.563  Sum_probs=27.0

Q ss_pred             CCCccCCCC---C-CCeeecCCCCeEEeCCCCcc----cCccc
Q psy9228         178 GEPCYPGAC---G-DGSCQDVDGAMKCLCPIGTA----GKRCE  212 (834)
Q Consensus       178 ~~~C~~~~C---~-~g~C~~~~~~~~C~C~~g~~----G~~Ce  212 (834)
                      ||||+..+-   . ...|+|..++|+|.|++||.    |+.|+
T Consensus         1 IdEC~~~~~~~~~C~~~C~Nt~Gsy~C~C~~Gy~l~~d~~tC~   43 (45)
T d1szba2           1 IDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCS   43 (45)
T ss_dssp             CCTTCCCTTSCCSSSSEEEEETTEEEEECCTTEEECTTSSCEE
T ss_pred             CcCCcCCCCCCCCCCCCCccCCCCeEEECCCCCeECCCCCCcc
Confidence            578876532   2 35899999999999999996    55664

>d1kloa1 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Laminin-type module
domain: Laminin gamma1 chain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.82  E-value=0.00026  Score=50.36  Aligned_cols=48  Identities=23%  Similarity=0.607  Sum_probs=37.1

Q ss_pred             CCCCCCEeccCCCCCceEe-eCCCCCCCCCCCCCCCCccCCCCCC-Ceee
Q psy9228         145 NCINNGLCQDAATRIGYTC-ICPPGFSGDRCSVLGEPCYPGACGD-GSCQ  192 (834)
Q Consensus       145 pC~n~g~C~~~~~~~~~~C-~C~~g~~G~~Ce~~~~~C~~~~C~~-g~C~  192 (834)
                      ||.++++|......+...| .|++||+|.+||.-.+.+..+|+.. |+|.
T Consensus         2 pC~~~~~c~~~~~~~~~vC~~C~~~~~G~~Ce~C~~g~yg~P~~~~g~C~   51 (55)
T d1kloa1           2 PCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVR   51 (55)
T ss_dssp             CSCTTCCEEECSSSCCEEECSCCTTEESTTSCEECTTEEEETTCTTSSCE
T ss_pred             cCcCCCccceeCCCCCEEcCCCCCCCccCcccccCCccccCcccCCCcCc
Confidence            6888898875554467888 5999999999998777777777764 5554

>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-like domain of nidogen-1
domain: EGF-like domain of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.78  E-value=0.00018  Score=47.00  Aligned_cols=27  Identities=30%  Similarity=0.865  Sum_probs=20.1

Q ss_pred             CCCCCCCCEeccCCCCCceEeeCCCCCCC
Q psy9228         143 HNNCINNGLCQDAATRIGYTCICPPGFSG  171 (834)
Q Consensus       143 ~~pC~n~g~C~~~~~~~~~~C~C~~g~~G  171 (834)
                      .+.|..+++|++.+  ++|+|.|++||.|
T Consensus         6 ~~~C~~~A~C~Nt~--Gsy~C~C~~Gy~G   32 (40)
T d1gl4a2           6 RHQCSVHAECRDYA--TGFCCRCVANYTG   32 (40)
T ss_dssp             GGGSCTTEEEEECS--SCEEEEECTTEEE
T ss_pred             CCCCCCCCEeecCC--CCeEeECCCCCcC
Confidence            45677778888776  7788888888864

>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-like domain of nidogen-1
domain: EGF-like domain of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.78  E-value=0.00021  Score=46.70  Aligned_cols=29  Identities=24%  Similarity=0.709  Sum_probs=24.3

Q ss_pred             CCCC-CCeeecCCCCeEEeCCCCcccC--ccc
Q psy9228         184 GACG-DGSCQDVDGAMKCLCPIGTAGK--RCE  212 (834)
Q Consensus       184 ~~C~-~g~C~~~~~~~~C~C~~g~~G~--~Ce  212 (834)
                      +.|. +++|+|..++|.|.|++||+|.  .|.
T Consensus         7 ~~C~~~A~C~Nt~Gsy~C~C~~Gy~GdG~~C~   38 (40)
T d1gl4a2           7 HQCSVHAECRDYATGFCCRCVANYTGNGRQCV   38 (40)
T ss_dssp             GGSCTTEEEEECSSCEEEEECTTEEECSSSEE
T ss_pred             CCCCCCCEeecCCCCeEeECCCCCcCCCCEee
Confidence            5676 6899999999999999999854  553

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.75  E-value=0.00028  Score=57.62  Aligned_cols=44  Identities=18%  Similarity=0.437  Sum_probs=34.4

Q ss_pred             CcEEEEecCC-CCCcccc-----CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA-----EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~-----~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.+. |......     .+..|.|..++.+|+|.|.|.++|..|
T Consensus        37 p~v~W~~ng~~i~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~N~~G   86 (97)
T d1cs6a1          37 ATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATNARG   86 (97)
T ss_dssp             CEEEEEETTEECCCSTTSSEEEETTEEEEESCCHHHHCEEEEEEEEETTE
T ss_pred             CEEEEEEeeeeccCCCCceEEeeeeeEEEEecccccCCEEEEEEEEECCC
Confidence            5799999655 6543322     456788899999999999999998765

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.75  E-value=0.00027  Score=58.61  Aligned_cols=44  Identities=14%  Similarity=0.319  Sum_probs=33.6

Q ss_pred             CcEEEEecCC-CCCcccc--------------CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA--------------EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~--------------~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|.|.|.++ ++.....              .++.|.|.+|+.+|+|.|.|.+.|..+
T Consensus        34 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~G   92 (105)
T d1nbqa1          34 PRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGG   92 (105)
T ss_dssp             EEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEEEEEEETTS
T ss_pred             CeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceeeEEEEEEECCC
Confidence            4789999776 4331111              246899999999999999999998776

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.00032  Score=58.21  Aligned_cols=44  Identities=14%  Similarity=0.225  Sum_probs=34.3

Q ss_pred             CcEEEEecCC-CCCcccc------C----CCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA------E----GNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~------~----~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.+. |....+.      .    ...|+|.+++.+|+|.|+|.++|..+
T Consensus        32 P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G   86 (105)
T d1wwca_          32 PTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLG   86 (105)
T ss_dssp             CEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTE
T ss_pred             CeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceEEEEEEEcCCC
Confidence            4899999655 6554322      1    24699999999999999999998876

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.72  E-value=0.00021  Score=57.70  Aligned_cols=44  Identities=9%  Similarity=0.047  Sum_probs=35.4

Q ss_pred             CcEEEEecCC-CCCcccc----CCCeEEEcccCCCCCe-eEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA----EGNVLRITNARLQDSG-KYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~----~~~~l~~~~~~~~d~g-~y~c~~~~~~~   45 (834)
                      ++|+|.|.+. +......    ....|.|.+++.+|+| .|+|.+.|..|
T Consensus        32 p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~~G   81 (92)
T d2ifga1          32 EQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVG   81 (92)
T ss_dssp             CCCCEEESCCCSSEEECCCCCSSEEEEEEESCCSTTTTCCEEECCEETTE
T ss_pred             cEEEEEECCceeeeeeeeeeeccceeEEEccccccccceEEEEEEEcCCC
Confidence            4899999766 6554333    3568999999999999 69999998876

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.00047  Score=57.38  Aligned_cols=44  Identities=14%  Similarity=0.260  Sum_probs=34.6

Q ss_pred             CcEEEEecCC-CCCcccc-------C------CCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA-------E------GNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~-------~------~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.+. |..+.+.       .      ...|+|.+++.+|+|.|+|.++|..|
T Consensus        30 P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~~G   87 (107)
T d1he7a_          30 PSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFG   87 (107)
T ss_dssp             CEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTE
T ss_pred             CeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeCCC
Confidence            4899999655 7654432       0      13599999999999999999998876

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.68  E-value=0.00051  Score=55.08  Aligned_cols=43  Identities=26%  Similarity=0.399  Sum_probs=31.6

Q ss_pred             CcEEEEecCC-CCCccc--c----CC--CeEEEcccCCCCCeeEEEEEcCCC
Q psy9228           2 AYIKWSRADG-LPLQRY--A----EG--NVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~--~----~~--~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      +++.|.|.+. +....+  .    ++  ..|+|.+|+.+|+|.|.|.+.+..
T Consensus        29 ~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~   80 (90)
T d1x44a1          29 ANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGGQ   80 (90)
T ss_dssp             CCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETTEE
T ss_pred             ceEEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEecce
Confidence            4789999665 433222  1    22  389999999999999999997643

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=96.63  E-value=0.00024  Score=56.96  Aligned_cols=44  Identities=16%  Similarity=0.243  Sum_probs=33.7

Q ss_pred             CcEEEEecCC-CCCcccc----C--CCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA----E--GNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~----~--~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      +.++|.|.+. |..+.+.    .  ...|.|.+++.+|+|.|+|.+.+..+
T Consensus        30 ~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~~~   80 (89)
T d1tiua_          30 VHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANAKS   80 (89)
T ss_dssp             CCCBCCSSSCCCCSSSSCEEEECSSCEEEECCSCCSCCCSEECCBCSSCBC
T ss_pred             cEEEEEEeeeecccceeEEEEeeceeEEEEEcCCChhcCEEEEEEECceEE
Confidence            5789999665 6655444    2  34799999999999999999976543

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.00049  Score=55.04  Aligned_cols=42  Identities=26%  Similarity=0.343  Sum_probs=33.4

Q ss_pred             CcEEEEecCC-CCCccccCCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYAEGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .++.|.|++. +...  .....|.|++++.+|+|.|.|.+.|..+
T Consensus        31 ~~~~w~k~g~~~~~~--~~~~~l~i~~~~~~dsG~Y~C~a~n~~~   73 (89)
T d1f2qa2          31 YKVIYYKDGEALKYW--YENHNISITNATVEDSGTYYCTGKVWQL   73 (89)
T ss_dssp             EEEEEEETTEECCSC--CCSSEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             eEEEEEEeeeccccc--cccceEEEeeeeeecCcEEEEEEEeCCC
Confidence            4789999555 6543  2456899999999999999999987653

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.60  E-value=0.00033  Score=57.74  Aligned_cols=44  Identities=14%  Similarity=0.383  Sum_probs=33.1

Q ss_pred             CcEEEEecCC-CCCcccc--------------CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA--------------EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~--------------~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      +.|+|.|.++ +......              .+..|+|.+|+.+|+|.|.|.+++..+
T Consensus        31 p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~~~D~G~Y~C~a~n~~g   89 (102)
T d1f97a1          31 PRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSEEGG   89 (102)
T ss_dssp             EEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEEEEEEETTS
T ss_pred             CeEEEEeccccceeeeccccccccceeeEEEecCCEEEEeECCccCCEEEEEEEEECCC
Confidence            4789998666 2221111              256799999999999999999998775

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.00069  Score=54.61  Aligned_cols=25  Identities=24%  Similarity=0.272  Sum_probs=22.3

Q ss_pred             CCeEEEcccCCCCCeeEEEEEcCCC
Q psy9228          20 GNVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus        20 ~~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      ++.|+|.+++.+|+|.|.|.+.+..
T Consensus        59 ~~sL~I~~l~~~DsG~Y~c~~~n~~   83 (93)
T d1ccza1          59 SGSLTIYNLTSSDEDEYEMESPNIT   83 (93)
T ss_dssp             TCCEEECSCCGGGCEEEEEECTTCC
T ss_pred             eeEEEEEecChhhCEEEEEEEECCC
Confidence            5689999999999999999997654

>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.00082  Score=44.42  Aligned_cols=28  Identities=25%  Similarity=0.608  Sum_probs=22.2

Q ss_pred             CCccC---CCCCCCeeecCCCCeEEeCCCCcc
Q psy9228         179 EPCYP---GACGDGSCQDVDGAMKCLCPIGTA  207 (834)
Q Consensus       179 ~~C~~---~~C~~g~C~~~~~~~~C~C~~g~~  207 (834)
                      |||+.   .+|.+ .|++..++|+|.|+.||.
T Consensus         1 dEC~~~~~~~C~~-~C~n~~Gsy~C~C~~Gy~   31 (42)
T d1nzia2           1 NECTDFVDVPCSH-FCNNFIGGYFCSCPPEYF   31 (42)
T ss_dssp             CTTTC-CCCCSSS-EEEEETTEEEEECCTTCE
T ss_pred             CCCCCCCCcCCCC-EeecCCCCEEEeCCCCCE
Confidence            56753   35653 899999999999999986

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.00053  Score=57.68  Aligned_cols=25  Identities=28%  Similarity=0.526  Sum_probs=22.9

Q ss_pred             CeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228          21 NVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus        21 ~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ..|+|.+++.+|+|.|.|.+.|..|
T Consensus        68 ~~L~I~~v~~~D~G~Y~C~a~N~~G   92 (113)
T d2dava1          68 FEMQIIKAKDNFAGNYRCEVTYKDK   92 (113)
T ss_dssp             EEEEECSCCTTSCEEEEEEEECSSC
T ss_pred             EEEEEccCCHHHCeEEEEEEEeCCC
Confidence            3699999999999999999998876

>d2slia1 b.29.1.9 (A:81-276) Leech intramolecular trans-sialidase, N-terminal domain {North american leech (Macrobdella decora) [TaxId: 6405]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Leech intramolecular trans-sialidase, N-terminal domain
domain: Leech intramolecular trans-sialidase, N-terminal domain
species: North american leech (Macrobdella decora) [TaxId: 6405]

Probab=96.48  E-value=0.01  Score=54.92  Aligned_cols=137  Identities=19%  Similarity=0.177  Sum_probs=81.1

Q ss_pred             eeEEEEEEEeeCCCC--eeEEEeccCCccccCCCCCeEEEEE-ECcEEEEEEecc--cE--EEE-----eeeeecCCCeE
Q psy9228         405 LHFSIELSFKPTDYN--GLIMYTGDSNMKSYKGKGDFVSFGL-EDGYPVFRFDVG--LV--VLR-----SKVTLVPHEWV  472 (834)
Q Consensus       405 ~~~~i~~~frt~~~~--GlLl~~~~~~~~~~~~~~d~~~l~L-~~G~l~~~~~~G--~~--~i~-----s~~~~~dg~wH  472 (834)
                      ..++|+++||+...+  ..|+..+....   .....++.+.+ .++.+.+.+..+  ..  ...     ....+++++||
T Consensus        35 ~~~Ti~~w~k~~s~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~  111 (196)
T d2slia1          35 TQGTIILSYKSTSENGIQSLFSVGNSTA---GNQDRHFHIYITNSGGIGIELRNTDGVFNYTLDRPASVRALYKGERVFN  111 (196)
T ss_dssp             SSEEEEEEEEECCCCSEEEEEEEECCST---TCTTEEEEEEEETTSCEEEEEEECTTTCEEEEEESSCCCSEETTEECCE
T ss_pred             CCEEEEEEEEECCCCCEEEEEEEeCCCC---CccCCEEEEEEeCCCceEEEEeeccccceEeecccceeecceecCCcEE
Confidence            368999999987755  44554433221   12334444444 445666655332  21  111     23346889999


Q ss_pred             EEEEEEECC--eEEEEECCeeeeeeecCCCc-cccccCCCceeeccccCCCcccCcCcccccCceeEEeeeEEcCeeeee
Q psy9228         473 VVTIIKDFK--EGKLSVGGEPLIVGSTPGEK-LQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDL  549 (834)
Q Consensus       473 ~V~v~~~~~--~~~l~VD~~~~~~~~~~g~~-~~~l~~~~~l~iGG~~~~~~~~~~~~~~~~gF~GCi~~v~ing~~~~~  549 (834)
                      +|.+.++..  .++|+|||............ .........+++|+.....       .....|.|.|.+++|-.+.+.-
T Consensus       112 hva~t~d~~~~~~~lYvnG~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~~~-------~~~~~f~G~Id~v~iyn~aLs~  184 (196)
T d2slia1         112 TVALKADAANKQCRLFANGELLATLDKDAFKFISDITGVDNVTLGGTKRQG-------KIAYPFGGTIGDIKVYSNALSD  184 (196)
T ss_dssp             EEEEEEETTTTEEEEEETTEEEEEEECSSCCCGGGSTTCCEEEESSEEETT-------EEESCCCEEEEEEEEESSCCCH
T ss_pred             EEEEEEECCCCEEEEEECCeEEEEEecCCCccceeeeecceeeeeccccCC-------CCCccceEEeEEEEEECCcCCH
Confidence            999999755  58999999877654433220 1111223457777654421       1234699999999998776655


Q ss_pred             cc
Q psy9228         550 IN  551 (834)
Q Consensus       550 ~~  551 (834)
                      .+
T Consensus       185 ~E  186 (196)
T d2slia1         185 EE  186 (196)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.45  E-value=0.00079  Score=44.01  Aligned_cols=29  Identities=31%  Similarity=0.815  Sum_probs=22.4

Q ss_pred             CCCccCCC--CCCCeeecCCCCeEEeCCCCcc
Q psy9228         178 GEPCYPGA--CGDGSCQDVDGAMKCLCPIGTA  207 (834)
Q Consensus       178 ~~~C~~~~--C~~g~C~~~~~~~~C~C~~g~~  207 (834)
                      +|||..++  |. -.|++..++|+|.|++||.
T Consensus         2 ~neC~~~nggC~-h~C~n~~g~~~C~C~~Gy~   32 (40)
T d3bpse1           2 TNECLDNNGGCS-HVCNDLKIGYECLCPDGFQ   32 (40)
T ss_dssp             SCGGGTGGGGCS-SEEEECSSSEEEECCTTCC
T ss_pred             cccCCCCCCCCc-CEEEcCCCCEEEECCCCCE
Confidence            35776643  43 3899999999999999986

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.39  E-value=0.0013  Score=54.86  Aligned_cols=25  Identities=36%  Similarity=0.606  Sum_probs=23.0

Q ss_pred             CeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228          21 NVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus        21 ~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ..|.|.+|+.+|+|.|.|.+.|..+
T Consensus        72 ~~L~I~~v~~~D~G~Y~C~a~N~~G   96 (110)
T d2avga1          72 FELHITDAQPAFTGGYRCEVSTKDK   96 (110)
T ss_dssp             EEEEEESCCTTCCEEEEEEEEETTE
T ss_pred             EEEEEeccCHHHCcEEEEEEEECCC
Confidence            3699999999999999999998876

>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.0011  Score=43.84  Aligned_cols=31  Identities=32%  Similarity=0.843  Sum_probs=23.7

Q ss_pred             CccCCCCCCCCCCCCEeccCCCCCceEeeCCCCCC
Q psy9228         136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFS  170 (834)
Q Consensus       136 ~~C~~~~~~pC~n~g~C~~~~~~~~~~C~C~~g~~  170 (834)
                      |+|+.....+|.+  .|++.+  ++|+|.|++||.
T Consensus         1 dEC~~~~~~~C~~--~C~n~~--Gsy~C~C~~Gy~   31 (42)
T d1nzia2           1 NECTDFVDVPCSH--FCNNFI--GGYFCSCPPEYF   31 (42)
T ss_dssp             CTTTC-CCCCSSS--EEEEET--TEEEEECCTTCE
T ss_pred             CCCCCCCCcCCCC--EeecCC--CCEEEeCCCCCE
Confidence            4565222467976  899987  999999999996

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.35  E-value=0.0015  Score=56.11  Aligned_cols=24  Identities=17%  Similarity=0.414  Sum_probs=22.5

Q ss_pred             eEEEcccCCCCCeeEEEEEcCCCC
Q psy9228          22 VLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus        22 ~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .|+|.+|+.+|+|.|+|.+.|..|
T Consensus        95 ~L~I~~v~~~D~G~Y~C~a~N~~G  118 (130)
T d1gxea_          95 IFTVEGAEKEDEGVYTVTVKNPVG  118 (130)
T ss_dssp             EEECSCCCTTTCEEEEEEEECSSC
T ss_pred             EEEECcCChhcCEEEEEEEEECCC
Confidence            599999999999999999998876

>d3btaa1 b.29.1.6 (A:872-1078) Botulinum neurotoxin {Clostridium botulinum, serotype A [TaxId: 1491]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Clostridium neurotoxins, the second last domain
domain: Botulinum neurotoxin
species: Clostridium botulinum, serotype A [TaxId: 1491]

Probab=96.34  E-value=0.0072  Score=56.49  Aligned_cols=127  Identities=12%  Similarity=0.060  Sum_probs=81.8

Q ss_pred             ceeEEEEEEEeeCCCCe--e--EEEeccCCccccCCCCCeEEEEEECcEEEEEEeccc---EE------EEeeeeecCCC
Q psy9228         404 HLHFSIELSFKPTDYNG--L--IMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVGL---VV------LRSKVTLVPHE  470 (834)
Q Consensus       404 ~~~~~i~~~frt~~~~G--l--Ll~~~~~~~~~~~~~~d~~~l~L~~G~l~~~~~~G~---~~------i~s~~~~~dg~  470 (834)
                      ...++|+++||......  .  ..+....    .......+.+.+.++.+.+.+..+.   ..      ......+.+++
T Consensus        66 ~~~fTis~Wvk~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (207)
T d3btaa1          66 YENFSTSFWIRIPKYFNSISLNNEYTIIN----CMENNSGWKVSLNYGEIIWTLQDTQEIKQRVVFKYSQMINISDYINR  141 (207)
T ss_dssp             GSSEEEEEEEECCCCCSSTTTTCEEEEEE----CCSSSCSCEEEEESSEEEEEEECTTCCEEEEEEECCSCCSSCSSTTS
T ss_pred             CCCEEEEEEEecCCCcccceeeeeeeeec----CCCCcceEEEEeeccceeeEEecCCcceeccccccceeeeeeecCCc
Confidence            34699999999877432  1  1111000    0234556778889999888876541   11      12345688999


Q ss_pred             eEEEEEEEECC-eEEEEECCeeeeeeecCCCccccccCCCceeeccccCCCcccCcCcccccCceeEEeeeEEcCee
Q psy9228         471 WVVVTIIKDFK-EGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSE  546 (834)
Q Consensus       471 wH~V~v~~~~~-~~~l~VD~~~~~~~~~~g~~~~~l~~~~~l~iGG~~~~~~~~~~~~~~~~gF~GCi~~v~ing~~  546 (834)
                      ||+|.+.+++. .++|+|||.........+.  ..+.....+.+|.-...          ...|.|=|.+++|-.+.
T Consensus       142 W~Hva~t~d~~~~~~lYiNG~lv~s~~~s~~--~~~~~~~~~~~g~~~~~----------~~~~~~~id~~riyn~a  206 (207)
T d3btaa1         142 WIFVTITNNRLNNSKIYINGRLIDQKPISNL--GNIHASNNIMFKLDGCR----------DTHRYIWIKYFNLFDKE  206 (207)
T ss_dssp             EEEEEEEECTTSEEEEEETTEEEEEEECTTC--CCCCCCSEEEEEEESCC----------CTTCEEEEEEEEEESSC
T ss_pred             EEEEEEEEcCCCcEEEEECCEEEEeEEecCc--cccccCCcEEEEECCCC----------CCcceEEEeEEEEECcc
Confidence            99999999864 6899999998876555443  33445556666664442          23566779999886543

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.33  E-value=0.0011  Score=54.02  Aligned_cols=27  Identities=26%  Similarity=0.446  Sum_probs=23.8

Q ss_pred             CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228          19 EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus        19 ~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .++.|+|.|++.+|+|.|.|.+.+..+
T Consensus        58 ~ngSL~I~nl~~~DsG~Y~c~v~~~~g   84 (98)
T d1hnga1          58 ANGDLKIKNLTRDDSGTYNVTVYSTNG   84 (98)
T ss_dssp             TTSCEEESSCCGGGCEEEEEEEEETTC
T ss_pred             CCccEEEeCCCHHHCEEEEEEEEeCCC
Confidence            468899999999999999999976654

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.32  E-value=0.0015  Score=51.61  Aligned_cols=41  Identities=15%  Similarity=0.230  Sum_probs=29.9

Q ss_pred             CcEEEEecCC-CCCccccCCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPLQRYAEGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .+|+|.|++. |+...   .+.+.|..+..+|+|.|.|.++|..|
T Consensus        32 ~~i~W~k~g~~i~~~~---~~~~~l~~~~~~d~G~Y~C~A~N~~G   73 (85)
T d1rhfa2          32 VTIVWWRGTTKIGGPA---PSPSVLNVTGVTQSTMFSCEAHNLKG   73 (85)
T ss_dssp             CEEEEEETTEECSCSE---ESSEEEEECCCSSCEEEEEEEEETTE
T ss_pred             eEEEEEECCEECCCCC---CcceEEecCCccccEEEEEEEEcCCC
Confidence            4899999544 65433   23456666667899999999998876

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=96.16  E-value=0.0018  Score=54.09  Aligned_cols=44  Identities=18%  Similarity=0.274  Sum_probs=33.9

Q ss_pred             CcEEEEecCC-CCC-cccc---------CCCeEEEcccCCCCCe---eEEEEEcCCCC
Q psy9228           2 AYIKWSRADG-LPL-QRYA---------EGNVLRITNARLQDSG---KYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~-~~~-~~~~---------~~~~l~~~~~~~~d~g---~y~c~~~~~~~   45 (834)
                      +++.|.|.+. +.. ....         .++.|.|.+|+.+|+|   .|.|.+.|..+
T Consensus        33 p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~gd~g~Y~C~A~N~~g   90 (111)
T d1biha2          33 PLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAV   90 (111)
T ss_dssp             CEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTC
T ss_pred             CEEEEEeCCccccccccceeeeeeeccccccccEEeeeEeeccCCceEEEEEEEeCCC
Confidence            5899999766 432 2111         4679999999999888   79999999876

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=96.10  E-value=0.002  Score=53.45  Aligned_cols=25  Identities=32%  Similarity=0.573  Sum_probs=23.2

Q ss_pred             CeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228          21 NVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus        21 ~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ..|+|.+++.+|+|.|.|.+.|..|
T Consensus        74 ~~L~i~~~~~~D~G~Y~C~a~N~~G   98 (109)
T d2fdbp2          74 EVLYIRNVTFEDAGEYTCLAGNSIG   98 (109)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECSSC
T ss_pred             EEEEECCCCHHHCeEEEEEEEECCC
Confidence            5799999999999999999998876

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.08  E-value=0.0024  Score=44.85  Aligned_cols=25  Identities=28%  Similarity=0.720  Sum_probs=21.1

Q ss_pred             CceeeecCCCcEEcCCCCCC----CCCcc
Q psy9228         621 GGMCKVTPDSYECLCSLGYA----PPNCA  645 (834)
Q Consensus       621 gg~C~~~~~~~~C~C~~g~~----G~~Ce  645 (834)
                      ...|++++++|+|.|++||.    |..|+
T Consensus        23 ~~~C~Nt~GsY~C~C~~Gy~l~~d~~tC~   51 (53)
T d1apqa_          23 QHLCHNYVGGYFCSCRPGYELQEDRHSCQ   51 (53)
T ss_dssp             SSEEEEETTEEEEECSTTCEECTTSSCEE
T ss_pred             cCEeEcCCCCeEeECCCCCeECCCCCcee
Confidence            45899999999999999995    55565

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.0017  Score=51.10  Aligned_cols=36  Identities=17%  Similarity=0.302  Sum_probs=28.3

Q ss_pred             CcEEEEecCC--CCCccccCCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           2 AYIKWSRADG--LPLQRYAEGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         2 ~~~~w~~~~~--~~~~~~~~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ++|+|.|.+.  ++        .+.+.+|+.+|+|.|+|.+.|.-+
T Consensus        34 P~v~W~k~g~~~~~--------~~~~~~v~~~d~G~Y~C~A~N~~G   71 (84)
T d2oz4a3          34 PELKCLKDGTFPLP--------IGESVTVTRDLEGTYLCRARSTQG   71 (84)
T ss_dssp             CEEEEEETTTEECC--------TTSCEECCGGGCEEEEEEEEETTE
T ss_pred             cEEEEEEeecccee--------eeeeeccccCCCCEEEEEEEcCCC
Confidence            4899999665  32        234678899999999999988765

>d1epwa1 b.29.1.6 (A:862-1079) Botulinum neurotoxin {Clostridium botulinum, serotype B [TaxId: 1491]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Clostridium neurotoxins, the second last domain
domain: Botulinum neurotoxin
species: Clostridium botulinum, serotype B [TaxId: 1491]

Probab=96.00  E-value=0.049  Score=50.70  Aligned_cols=135  Identities=10%  Similarity=0.108  Sum_probs=83.2

Q ss_pred             ceeEEEEEEEeeCCCCee--EEEecc-CCccccCCCCCeEEEEEECcEEEEEEecc--c-EEE------EeeeeecCCCe
Q psy9228         404 HLHFSIELSFKPTDYNGL--IMYTGD-SNMKSYKGKGDFVSFGLEDGYPVFRFDVG--L-VVL------RSKVTLVPHEW  471 (834)
Q Consensus       404 ~~~~~i~~~frt~~~~Gl--Ll~~~~-~~~~~~~~~~d~~~l~L~~G~l~~~~~~G--~-~~i------~s~~~~~dg~w  471 (834)
                      ...++|+++||......-  .+.... ............+.+.+.++.+.+.+...  . ...      .....+.+++|
T Consensus        61 ~~~~Tis~Wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W  140 (218)
T d1epwa1          61 FLDFSVSFWIRIPKYKNDGIQNYIHNEYTIINCMKNNSGWKISIRGNRIIWTLIDINGKTKSVFFEYNIREDISEYINRW  140 (218)
T ss_dssp             SCCEEEEEEEECCCCCGGGHHHHHHCEEEEEEEEETTEEEEEEEETTEEEEEEECTTCCEEEEEEECCSSCSSCSSTTSC
T ss_pred             CCCEEEEEEeccCCCCCcceeEEeccccceecccCCCcceEEEEeCCcceEEEEecCCcceeecccccccccccccCCcE
Confidence            356999999997764321  000000 00000012344567788888888777543  1 111      12346778999


Q ss_pred             EEEEEEEECCeEEEEECCeeeeeeecCCCccccccCCCceeeccccCCCcccCcCcccccCceeEEeeeEEcCeeeeec
Q psy9228         472 VVVTIIKDFKEGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDVLGSELDLI  550 (834)
Q Consensus       472 H~V~v~~~~~~~~l~VD~~~~~~~~~~g~~~~~l~~~~~l~iGG~~~~~~~~~~~~~~~~gF~GCi~~v~ing~~~~~~  550 (834)
                      |+|.+.+++..++++|||........++.  ..+.....+.+|.-...          ...|.|-|.+|+|-.+.+.-.
T Consensus       141 ~hi~~t~d~~~~~iYvNG~l~~~~~~~~~--~~~~~~~~~~~g~~~~~----------~~~~~g~id~v~iynraLs~~  207 (218)
T d1epwa1         141 FFVTITNNLNNAKIYINGKLESNTDIKDI--REVIANGEIIFKLDGDI----------DRTQFIWMKYFSIFNTELSQS  207 (218)
T ss_dssp             EEEEEEECSSEEEEEETTEEEEEEECSSC--CCCCCCSEEEEEEEESC----------CTTCCEEEEEEEEESSCCCHH
T ss_pred             EEEEEEECCCEEEEEECCEEEeeeeccCc--ccccCCCcEEEEEecCC----------CCCCceEeEEEEEECCCCCHH
Confidence            99999999999999999988766544432  23344556777754432          235889999999977665543

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.93  E-value=0.0029  Score=51.59  Aligned_cols=43  Identities=19%  Similarity=0.292  Sum_probs=30.9

Q ss_pred             cEEEEecCC-CCCc------ccc------CCCeEEEcccC-CCCCeeEEEEEcCCCC
Q psy9228           3 YIKWSRADG-LPLQ------RYA------EGNVLRITNAR-LQDSGKYKCEIQGHDS   45 (834)
Q Consensus         3 ~~~w~~~~~-~~~~------~~~------~~~~l~~~~~~-~~d~g~y~c~~~~~~~   45 (834)
                      .|.|.|.+. ++..      .+.      ....|.|.+|+ .+|+|.|.|.++|..|
T Consensus        34 ~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~G   90 (101)
T d3b5ha1          34 DWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKG   90 (101)
T ss_dssp             EEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEEEEEEEETTE
T ss_pred             EEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCCEEEEEEEEECCC
Confidence            689999654 3321      111      23489999998 5799999999998865

>d1kloa1 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Laminin-type module
domain: Laminin gamma1 chain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.90  E-value=0.0015  Score=46.32  Aligned_cols=49  Identities=22%  Similarity=0.476  Sum_probs=36.9

Q ss_pred             CCCCCCeecccCCCCCceee-ecCCCCCCCCCccCccCCCCCCccCCCceee
Q psy9228         575 PCQNYGICYPTDTSERGYNC-SCLTGYSGDHCEKENNMCMKGDVCKNGGMCK  625 (834)
Q Consensus       575 pC~ngg~C~~~~~~~~~~~C-~C~~G~~G~~Ce~~~~~C~~~~pC~ngg~C~  625 (834)
                      ||.++++|..... .....| .|++||+|++||.-.+.+..+ |+..++.|.
T Consensus         2 pC~~~~~c~~~~~-~~~~vC~~C~~~~~G~~Ce~C~~g~yg~-P~~~~g~C~   51 (55)
T d1kloa1           2 PCPGGSSCAIVPK-TKEVVCTHCPTGTAGKRCELCDDGYFGD-PLGSNGPVR   51 (55)
T ss_dssp             CSCTTCCEEECSS-SCCEEECSCCTTEESTTSCEECTTEEEE-TTCTTSSCE
T ss_pred             cCcCCCccceeCC-CCCEEcCCCCCCCccCcccccCCccccC-cccCCCcCc
Confidence            5778888865443 136778 699999999999877776666 887777775

>d1xdtr_ g.3.11.1 (R:) Heparin-binding epidermal growth factor, HBEGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heparin-binding epidermal growth factor, HBEGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.88  E-value=0.0015  Score=42.55  Aligned_cols=30  Identities=33%  Similarity=0.720  Sum_probs=25.0

Q ss_pred             CCCCCCeeec--CCCCeEEeCCCCcccCcccc
Q psy9228         184 GACGDGSCQD--VDGAMKCLCPIGTAGKRCEQ  213 (834)
Q Consensus       184 ~~C~~g~C~~--~~~~~~C~C~~g~~G~~Ce~  213 (834)
                      +-|.||+|.-  ..+...|.|+.||+|.+|+.
T Consensus         8 ~yCihG~C~~i~~l~~~~C~C~~gY~G~RCq~   39 (41)
T d1xdtr_           8 DFCIHGECKYVKELRAPSCICHPGYHGERCHG   39 (41)
T ss_dssp             TCCSSEEECCBGGGTBCCEEECTTEESTTCCE
T ss_pred             CEeECcEEeecCcCCCceeECCCCCeecCccc
Confidence            4588899964  45789999999999999984

>d1a8da1 b.29.1.6 (A:1-247) Tetanus neurotoxin {Clostridium tetani [TaxId: 1513]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Clostridium neurotoxins, the second last domain
domain: Tetanus neurotoxin
species: Clostridium tetani [TaxId: 1513]

Probab=95.84  E-value=0.039  Score=52.81  Aligned_cols=130  Identities=12%  Similarity=0.133  Sum_probs=82.4

Q ss_pred             eeEEEEEEEeeCCCCe------------eEEEeccCCccccCCCCCeEEEEEECcEEEEEEeccc---EEE------Eee
Q psy9228         405 LHFSIELSFKPTDYNG------------LIMYTGDSNMKSYKGKGDFVSFGLEDGYPVFRFDVGL---VVL------RSK  463 (834)
Q Consensus       405 ~~~~i~~~frt~~~~G------------lLl~~~~~~~~~~~~~~d~~~l~L~~G~l~~~~~~G~---~~i------~s~  463 (834)
                      ..|+|+++||+.....            .+......    .......+.+.+.++.+.+.+....   ...      ...
T Consensus        85 ~~fTis~Wvk~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  160 (247)
T d1a8da1          85 NNFTVSFWLRVPKVSASHLEQYGTNEYSIISSMKKH----SLSIGSGWSVSLKGNNLIWTLKDSAGEVRQITFRDLPDKF  160 (247)
T ss_dssp             SCEEEEEEEECCCCCHHHHHHHTTCEEEEEECCEEC----GGGCEEEEEEEEETTEEEEEEECTTSCEEEEEEECCSBTT
T ss_pred             CCEEEEEEEEcCCCCCcceeEeecCCCceEEeeccc----cCCCCccEEEEEeCCeEEEEEEecccCccccccceecccc
Confidence            5699999999876431            11111110    0234566788899999888775531   111      123


Q ss_pred             eeecCCCeEEEEEEEECC-eEEEEECCeeeeeeecCCCccccccCCCceeeccccCCCcccCcCcccccCceeEEeeeEE
Q psy9228         464 VTLVPHEWVVVTIIKDFK-EGKLSVGGEPLIVGSTPGEKLQVLNLRTPLYLGGYNIYHVTPSLSVEVTEGFHGCISTIDV  542 (834)
Q Consensus       464 ~~~~dg~wH~V~v~~~~~-~~~l~VD~~~~~~~~~~g~~~~~l~~~~~l~iGG~~~~~~~~~~~~~~~~gF~GCi~~v~i  542 (834)
                      ..+.+++||+|.+.+++. .++++|||...........  ........+.+|.-..          ....|.|=|.+++|
T Consensus       161 ~~~~~~~W~hia~t~d~~~~~~lYinG~~~~~~~~~~~--~~~~~~~~~~ig~~~~----------~~~~~~G~Idd~~i  228 (247)
T d1a8da1         161 NAYLANKWVFITITNDRLSSANLYINGVLMGSAEITGL--GAIREDNNITLKLDRC----------NNNNQYVSIDKFRI  228 (247)
T ss_dssp             SCSSSSSCEEEEEEECTTSEEEEEETTEEEEEEECTTC--CCCCCCSEEEEEEESC----------CCTTCEEEEEEEEE
T ss_pred             ccccCCcEEEEEEEEeCCCcEEEEECCEEEEeEEeccc--cccCCCCeEEEEEcCC----------CCCCceEEeeEEEE
Confidence            568899999999999864 8899999988765443322  1223344455553222          13569999999999


Q ss_pred             cCeeeeec
Q psy9228         543 LGSELDLI  550 (834)
Q Consensus       543 ng~~~~~~  550 (834)
                      -.+.+...
T Consensus       229 ynraLs~~  236 (247)
T d1a8da1         229 FCKALNPK  236 (247)
T ss_dssp             ESSCCCHH
T ss_pred             ECCCCCHH
Confidence            77766544

>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.76  E-value=0.0028  Score=42.65  Aligned_cols=21  Identities=24%  Similarity=0.740  Sum_probs=18.5

Q ss_pred             CCCEeccCCCCCceEeeCCCCCC
Q psy9228         148 NNGLCQDAATRIGYTCICPPGFS  170 (834)
Q Consensus       148 n~g~C~~~~~~~~~~C~C~~g~~  170 (834)
                      -...|++.+  ++|+|.|++||.
T Consensus        14 C~~~C~Nt~--Gsy~C~C~~Gy~   34 (45)
T d1szba2          14 CDHHCHNHL--GGFYCSCRAGYV   34 (45)
T ss_dssp             SSSEEEEET--TEEEEECCTTEE
T ss_pred             CCCCCccCC--CCeEEECCCCCe
Confidence            356999987  999999999996

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=95.69  E-value=0.0031  Score=49.63  Aligned_cols=38  Identities=24%  Similarity=0.433  Sum_probs=30.2

Q ss_pred             cEEEEecCC-CCCccccCCCeEEEcccCCCCCeeEEEEEcCCC
Q psy9228           3 YIKWSRADG-LPLQRYAEGNVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus         3 ~~~w~~~~~-~~~~~~~~~~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      .+.|.|++. |+.    ....|.|.+|+.+|+|.|.|.+.+..
T Consensus        36 ~~~w~~~g~~~~~----~~~~l~i~~v~~~dsG~Y~C~a~ns~   74 (85)
T d2fcba1          36 SIQWFHNGNLIPT----HTQPSYRFKANNNDSGEYTCQTGQTS   74 (85)
T ss_dssp             CCEEEETTEECTT----CCSSEEEEECCGGGCEEEEEECTTSB
T ss_pred             EEEeecccccccc----cccceEEeeccccCCcEEEEECCCCc
Confidence            578888554 643    35689999999999999999997653

>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.59  E-value=0.0032  Score=41.01  Aligned_cols=30  Identities=43%  Similarity=1.212  Sum_probs=22.9

Q ss_pred             CccCCCCCCCCCCCCEeccCCCCCceEeeCCCCCC
Q psy9228         136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFS  170 (834)
Q Consensus       136 ~~C~~~~~~pC~n~g~C~~~~~~~~~~C~C~~g~~  170 (834)
                      |+|+ .....|.+  .|++.+  ++|+|.|++||.
T Consensus         3 neC~-~~nggC~h--~C~n~~--g~~~C~C~~Gy~   32 (40)
T d3bpse1           3 NECL-DNNGGCSH--VCNDLK--IGYECLCPDGFQ   32 (40)
T ss_dssp             CGGG-TGGGGCSS--EEEECS--SSEEEECCTTCC
T ss_pred             ccCC-CCCCCCcC--EEEcCC--CCEEEECCCCCE
Confidence            4665 12345766  899987  899999999996

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=95.50  E-value=0.0035  Score=49.12  Aligned_cols=38  Identities=21%  Similarity=0.493  Sum_probs=28.8

Q ss_pred             cEEEEecCC-CCCccccCCCeEEEcccCCCCCeeEEEEEcCCC
Q psy9228           3 YIKWSRADG-LPLQRYAEGNVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus         3 ~~~w~~~~~-~~~~~~~~~~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      .+.|.|.+. ++.    .+..|.|.+++.+|+|.|.|.+.+..
T Consensus        37 ~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~a~~s~   75 (84)
T d1fnla1          37 STQWFHNESLISS----QASSYFIDAATVNDSGEYRCQTNLST   75 (84)
T ss_dssp             CCEEEETTEEEES----SCSEEEESSCCGGGCEEEEEECSSSC
T ss_pred             EEEEeeeceeeee----cceeeEecCCcccCCEEEEEEccCCC
Confidence            455667443 532    45789999999999999999997653

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.45  E-value=0.0022  Score=51.81  Aligned_cols=25  Identities=28%  Similarity=0.648  Sum_probs=22.8

Q ss_pred             CeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228          21 NVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus        21 ~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      +.|.|.+|+.+|+|.|.|.+.|..|
T Consensus        60 ~~L~I~~v~~~D~G~Y~C~a~N~~G   84 (96)
T d2c9aa1          60 ASFNVVNTTKRDAGKYRCMIRTEGG   84 (96)
T ss_dssp             EEEEECSCCGGGCSEEEEEEEETTE
T ss_pred             eEEEECCCCHHHCeEEEEEEEeCCC
Confidence            5799999999999999999988765

>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.43  E-value=0.0026  Score=42.84  Aligned_cols=20  Identities=30%  Similarity=0.811  Sum_probs=17.7

Q ss_pred             CCEeccCCCCCceEeeCCCCCC
Q psy9228         149 NGLCQDAATRIGYTCICPPGFS  170 (834)
Q Consensus       149 ~g~C~~~~~~~~~~C~C~~g~~  170 (834)
                      ...|++.+  ++|+|.|++||.
T Consensus        15 ~~~C~Nt~--gsy~C~C~~Gy~   34 (45)
T d1nt0a3          15 DHYCHNYL--GGYYCSCRVGYI   34 (45)
T ss_dssp             SSEEEEET--TEEEEECCTTEE
T ss_pred             CCEeecCC--CCEEEeCCCCCE
Confidence            45899987  999999999995

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.30  E-value=0.0055  Score=47.68  Aligned_cols=38  Identities=34%  Similarity=0.590  Sum_probs=29.3

Q ss_pred             cEEEEecCC-CCCccccCCCeEEEcccCCCCCeeEEEEEcCCC
Q psy9228           3 YIKWSRADG-LPLQRYAEGNVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus         3 ~~~w~~~~~-~~~~~~~~~~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      .+.|.|.+. +..    .+..|.|.+|+.+|+|.|.|.+.+..
T Consensus        33 ~~~~~~~~~~~~~----~~~~l~i~~v~~~d~G~Y~C~a~~s~   71 (82)
T d1f2qa1          33 STKWFHNGSLSEE----TNSSLNIVNAKFEDSGEYKCQHQQVN   71 (82)
T ss_dssp             CCEEEETTEECSC----CSSEEEECSCCGGGCEEEEEECTTSS
T ss_pred             ceeeeeeeeeeec----ccceeEECCCChhhCCcEEEEecCCC
Confidence            345777544 543    45789999999999999999997654

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.21  E-value=0.0073  Score=49.73  Aligned_cols=26  Identities=15%  Similarity=0.340  Sum_probs=23.2

Q ss_pred             CCCeEEEcccCCCCCeeEEEEEcCCC
Q psy9228          19 EGNVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus        19 ~~~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      .++.|+|.+|+.+|+|.|+|...+.+
T Consensus        69 ~ngSL~I~~v~~~D~G~Y~c~v~~~~   94 (107)
T d1l6za1          69 SNGSLLFQMITMKDMGVYTLDMTDEN   94 (107)
T ss_dssp             TTSCEEECSCCGGGCEEEEEEEEETT
T ss_pred             ccccEEEcCCCchhCEEEEEEEEECC
Confidence            57899999999999999999996554

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.18  E-value=0.0055  Score=50.49  Aligned_cols=25  Identities=16%  Similarity=0.283  Sum_probs=22.9

Q ss_pred             CeEEEcccCCCCCee-EEEEEcCCCC
Q psy9228          21 NVLRITNARLQDSGK-YKCEIQGHDS   45 (834)
Q Consensus        21 ~~l~~~~~~~~d~g~-y~c~~~~~~~   45 (834)
                      ..|+|.+|+.+|.|. |+|.++|..|
T Consensus        70 ~~L~I~~v~~~D~g~~Y~C~A~N~~G   95 (107)
T d1iray3          70 TVLNISEIESRFYKHPFTCFAKNTHG   95 (107)
T ss_dssp             EEEEESSCCGGGGSSCEEEEEECSSC
T ss_pred             EEEEEeecchHHCCcEEEEEEEeCCC
Confidence            479999999999996 9999999887

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.11  E-value=0.0034  Score=51.42  Aligned_cols=43  Identities=9%  Similarity=0.100  Sum_probs=34.1

Q ss_pred             cEEEEecCC-CCCcccc---CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           3 YIKWSRADG-LPLQRYA---EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         3 ~~~w~~~~~-~~~~~~~---~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      +++|.|.+. |......   ....|.|..++.+|.|.|.|.|+|.-+
T Consensus        38 ~v~W~~~~~~l~~~~~~~~~~~s~l~i~~~~~dd~g~ytC~A~n~~g   84 (103)
T d1iama1          38 TVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGAQFSCRTELDLR   84 (103)
T ss_dssp             EEEEEETTEEEEEEECCTTTEEEEEEEECCSSCSSCEEEEEEEEECG
T ss_pred             EEEEccccccccccccccccceEEEEEeeehhHCCCEEEEEEEeCCC
Confidence            688999666 7665444   245799999999999999999987654

>d2ah2a1 b.29.1.15 (A:409-633) Trypanosoma sialidase, C-terminal domain {Parasitic flagellate protozoan (Trypanosoma cruzi) [TaxId: 5693]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Trypanosoma sialidase, C-terminal domain
domain: Trypanosoma sialidase, C-terminal domain
species: Parasitic flagellate protozoan (Trypanosoma cruzi) [TaxId: 5693]

Probab=94.10  E-value=1.4  Score=39.63  Aligned_cols=150  Identities=17%  Similarity=0.195  Sum_probs=81.9

Q ss_pred             ceeeEEcC-Cceeeechhhhhh------ccCcceEEEEEEeCC-C--CeeEEecCCCCCCCCCCcceEEEEEE-CCEEEE
Q psy9228         651 GSEVHFLG-EGYVELKKELIEE------RRNEETIAFDFVTDD-K--NALLLWNGQPSYKNGIGREFIAVAVV-NGYLEY  719 (834)
Q Consensus       651 ~~~~~F~g-~s~~~~~~~~~~~------~~~~~~i~~~frT~~-~--~GlLl~~~~~~~~~~~~~~~~~l~l~-~G~l~~  719 (834)
                      ..++.|.| .+.++.+......      ....+++-..+.-.. +  ..-||-+.-.   ......+|.|... +.+-++
T Consensus        42 ~~G~~f~G~ga~a~WPVg~qg~nq~YhFaN~~FTLVATVsI~~vP~g~tPLlG~~l~---~~~~~~llgLSY~~~kkW~~  118 (225)
T d2ah2a1          42 PNGLKFAGVGGGALWPVSQQGQNQRYHFANHAFTLVASVTIHEVPKGASPLLGASLD---SSGGKKLLGLSYDKRHQWQP  118 (225)
T ss_dssp             TTEEEECSTTCEEEEESGGGCSBCTTGGGGTEEEEEEEEEECSCCSSEEEEEEEESS---SSSSSEEEEEEEETTSCEEE
T ss_pred             CCceEEecCCCCeEeeCCcCCCCeeEEEeccCEEEEEEEEEecccCCCCceeEEEec---CCCCcEEEEEEECCCCCEEE
Confidence            35789988 4677776432211      113444444443321 2  2234432211   1123457777775 566555


Q ss_pred             EEEcCCcEEEEEeCCceecCCCcEEEEEEEECCEEEEEEcCeeeec-ccCCCCccceecCCceEEcCcCCCCCCCCCccC
Q psy9228         720 SYDLGDGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVGK-GESPGSQDVINTRGNIYLGGTPNMDLMTGGRYV  798 (834)
Q Consensus       720 ~~~~g~~~~~l~~s~~~~nDg~wH~V~i~r~~~~~~l~VD~~~~~~-~~~~~~~~~l~~~~~lyiGG~p~~~~~~~~~~~  798 (834)
                      .+  ++....   ......-++.|+|.|....+.++++|||+.+.. ...........-...+||||--....      .
T Consensus       119 ~~--g~~~~~---~s~~we~~k~yqVal~l~~~~gsvYVDG~~v~~~~~~~~~~~~~~~IShFyiGg~g~~~~------~  187 (225)
T d2ah2a1         119 IY--GSTPVT---PTGSWEMGKRYHVVLTMANKIGSVYIDGEPLEGSGQTVVPDERTPDISHFYVGGYKRSGM------P  187 (225)
T ss_dssp             EE--TTSCCC---CBSCCCTTCEEEEEEEEETTEEEEEETTEECTTCCEECCCSSSCCCCCEEEESSCCCTTS------C
T ss_pred             ec--CCCccc---ccCcccCCcEEEEEEEEeCCcEEEEECCEEecCCcccccCCCCCCccceEEEeCCCCCCC------c
Confidence            55  332221   223467788899999999999999999998732 22222222222346899998643311      1


Q ss_pred             CCceEEEEEEEECCce
Q psy9228         799 HPMSGLMMNIHIQNKH  814 (834)
Q Consensus       799 ~~F~GCi~~v~in~~~  814 (834)
                      ..-.==+++|.|-+++
T Consensus       188 ~~~~VTVtNVlLYNRp  203 (225)
T d2ah2a1         188 TDSRVTVNNVLLYNRQ  203 (225)
T ss_dssp             CCCCEEEEEEEEESSC
T ss_pred             cCCcEEEEEeEEECCC
Confidence            2223467888887764

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.89  E-value=0.0076  Score=50.29  Aligned_cols=43  Identities=26%  Similarity=0.342  Sum_probs=33.0

Q ss_pred             cEEEEecCC-CCCcccc---------CC---CeEEEcccCCCC-CeeEEEEEcCCCC
Q psy9228           3 YIKWSRADG-LPLQRYA---------EG---NVLRITNARLQD-SGKYKCEIQGHDS   45 (834)
Q Consensus         3 ~~~w~~~~~-~~~~~~~---------~~---~~l~~~~~~~~d-~g~y~c~~~~~~~   45 (834)
                      .+.|.|.+. |......         .+   ..|.|.+|+.+| +|.|.|.++|..|
T Consensus        38 ~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~~G~Y~C~A~N~~G   94 (115)
T d2crya1          38 RIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFG   94 (115)
T ss_dssp             EEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHHHSCEEEEEECSSC
T ss_pred             EEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchhcCCeEEEEEEEECCC
Confidence            689999777 6543211         11   369999999999 6999999998876

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.76  E-value=0.037  Score=44.29  Aligned_cols=21  Identities=38%  Similarity=0.738  Sum_probs=19.4

Q ss_pred             eEEEcccCCCCCeeEEEEEcC
Q psy9228          22 VLRITNARLQDSGKYKCEIQG   42 (834)
Q Consensus        22 ~l~~~~~~~~d~g~y~c~~~~   42 (834)
                      .|+|.+|+.+|+|+|.|...+
T Consensus        68 sL~I~~l~~~DsG~Y~C~v~~   88 (97)
T d2nxyb1          68 PLIIKNLKIEDSDTYICEVED   88 (97)
T ss_dssp             CEEECSCCGGGCEEEEEEETT
T ss_pred             EEEECCCChHHCEEEEEEEec
Confidence            699999999999999999954

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.40  E-value=0.051  Score=44.11  Aligned_cols=24  Identities=25%  Similarity=0.409  Sum_probs=21.2

Q ss_pred             CCeEEEcccCCCCCeeEEEEEcCC
Q psy9228          20 GNVLRITNARLQDSGKYKCEIQGH   43 (834)
Q Consensus        20 ~~~l~~~~~~~~d~g~y~c~~~~~   43 (834)
                      +-.|+|.+|+.+|+|.|.|.....
T Consensus        64 ~~sL~I~~v~~~D~G~Y~C~V~~~   87 (105)
T d1dr9a1          64 NLSIVILALRPSDEGTYECVVLKY   87 (105)
T ss_dssp             TTEEEECSCCGGGCEEEEEEEEEC
T ss_pred             cEEEEECcCChHHCeEEEEEEEeC
Confidence            458999999999999999998644

>d1n1ta1 b.29.1.15 (A:413-634) Trypanosoma sialidase, C-terminal domain {Trypanosoma rangeli [TaxId: 5698]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Trypanosoma sialidase, C-terminal domain
domain: Trypanosoma sialidase, C-terminal domain
species: Trypanosoma rangeli [TaxId: 5698]

Probab=91.20  E-value=0.27  Score=44.41  Aligned_cols=150  Identities=16%  Similarity=0.154  Sum_probs=76.9

Q ss_pred             ceeeEEcC-Cceeeechhhhhhc------cCcceEEEEEEeCC---CCeeEEecCCCCCCCCCCcceEEEEEE-CCEEEE
Q psy9228         651 GSEVHFLG-EGYVELKKELIEER------RNEETIAFDFVTDD---KNALLLWNGQPSYKNGIGREFIAVAVV-NGYLEY  719 (834)
Q Consensus       651 ~~~~~F~g-~s~~~~~~~~~~~~------~~~~~i~~~frT~~---~~GlLl~~~~~~~~~~~~~~~~~l~l~-~G~l~~  719 (834)
                      ..++.|.| .+.++.|.......      ...+++-..+.-..   .+.-||-+.-.   ......+|.|... +.+-++
T Consensus        42 ~~G~~f~G~ga~A~WPVg~qg~nq~Y~Fan~~FTLVATVsI~~vP~g~~PLlG~~l~---~~~~~~llgLSY~~~kkW~~  118 (222)
T d1n1ta1          42 PNGLKFNGVGGGAVWPVARQGQTRRYQFANYRFTLVATVTIDELPKGTSPLLGAGLE---GPGDAKLLGLSYDKNRQWRP  118 (222)
T ss_dssp             TTEEEECSTTCEEEEESGGGCSSCTTGGGGTEEEEEEEEEECSCCSSEEEEEEEEES---SSTTCEEEEEEEETTSCEEE
T ss_pred             CCceEEeccCCCeEeeccccCCCeEEEEecCCeEEEEEEEEccccCCCCcccEEEec---CCCCcEEEEEEECCCCcEEE
Confidence            35788887 46777764322111      13344444443321   22234332111   0112456666665 444454


Q ss_pred             EEEcCCcEEEEEeCCceecCCCcEEEEEEEECCEEEEEEcCeeee-cccCCCCccceecCCceEEcCcCCCCCCCCCccC
Q psy9228         720 SYDLGDGVVTIKFSKKPVNDGIKHSVNVTRINKFGSLEVDSVIVG-KGESPGSQDVINTRGNIYLGGTPNMDLMTGGRYV  798 (834)
Q Consensus       720 ~~~~g~~~~~l~~s~~~~nDg~wH~V~i~r~~~~~~l~VD~~~~~-~~~~~~~~~~l~~~~~lyiGG~p~~~~~~~~~~~  798 (834)
                      .+  +++...   ......-++-|+|.|...+++++++|||+.+. ....+.......-...+||||--....      .
T Consensus       119 ~~--gg~~~~---~~~~we~~k~yqVal~l~~~~gsvYVDG~~v~~~~~~~~~~~~~~~IshFyiGg~g~~~~------~  187 (222)
T d1n1ta1         119 LY--GAAPAS---PTGSWELHKKYHVVLTMADRQGSVYVDGQPLAGSGNTVVRGATLPDISHFYIGGPRSKGA------P  187 (222)
T ss_dssp             EE--TTSCCC---CBSCCCTTCEEEEEEEEETTEEEEEETTEECTTTTEECCCSSSCCCEEEEEEECCCSSSS------C
T ss_pred             ec--CCCccc---cccccCCCcEEEEEEEEeCCEEEEEECCEEEecccccccCCCCCCccCeEEECCCCCCCC------C
Confidence            44  222211   12235556779999999999999999999873 222222212222235799998543211      1


Q ss_pred             CCceEEEEEEEECCce
Q psy9228         799 HPMSGLMMNIHIQNKH  814 (834)
Q Consensus       799 ~~F~GCi~~v~in~~~  814 (834)
                      ..-.==+++|.|-+++
T Consensus       188 ~~~~VTVtNVlLYNRp  203 (222)
T d1n1ta1         188 TDSRVTVTNVVLYNRR  203 (222)
T ss_dssp             CCCCEEEEEEEEESSC
T ss_pred             CCCcEEEEEeEEeCCC
Confidence            1122357788777763

>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.99  E-value=0.097  Score=35.60  Aligned_cols=33  Identities=30%  Similarity=0.735  Sum_probs=19.0

Q ss_pred             CCCCccCCCCCC--CCCCCCEeccCC----CCCceEeeCCCCCC
Q psy9228         133 DSCNTCKSSKHN--NCINNGLCQDAA----TRIGYTCICPPGFS  170 (834)
Q Consensus       133 ~~c~~C~~~~~~--pC~n~g~C~~~~----~~~~~~C~C~~g~~  170 (834)
                      ..|++|.   .+  -|.+  .|+..+    ..++|+|.|+.||.
T Consensus         2 N~cneC~---~~NGGC~h--~Cl~~p~~~n~~~~y~C~C~~G~~   40 (50)
T d1ijqa2           2 NWCERTT---LSNGGCQY--LCLPAPQINPHSPKFTCACPDGML   40 (50)
T ss_dssp             CTTSSSS---SGGGGCSS--EEEECCCCSTTCCSEEEECCTTCE
T ss_pred             ccccccC---CCCCCCcC--ccCCCcCcccCCCCEEEeCCCCCE
Confidence            3466665   22  2554  565322    23578888888885

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.47  E-value=0.027  Score=45.97  Aligned_cols=43  Identities=12%  Similarity=0.132  Sum_probs=29.6

Q ss_pred             cEEEEecCC-CCCcccc----C--C--CeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228           3 YIKWSRADG-LPLQRYA----E--G--NVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus         3 ~~~w~~~~~-~~~~~~~----~--~--~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      +|+|.|.+. |......    .  +  ..|.|...+.+|.|.|+|.|.|.-+
T Consensus        36 ~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~~   87 (106)
T d1zxqa1          36 TLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLM   87 (106)
T ss_dssp             EEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEECG
T ss_pred             eEEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEEEEEecCC
Confidence            799999555 6543222    1  1  2577777788888899999987654

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.04  E-value=0.074  Score=43.44  Aligned_cols=22  Identities=36%  Similarity=0.742  Sum_probs=20.3

Q ss_pred             CCeEEEcccCCCCCeeEEEEEc
Q psy9228          20 GNVLRITNARLQDSGKYKCEIQ   41 (834)
Q Consensus        20 ~~~l~~~~~~~~d~g~y~c~~~   41 (834)
                      +..|+|.||+.+|+|+|.|...
T Consensus        68 ~~sL~I~~v~~~D~G~Y~C~V~   89 (110)
T d1ncna_          68 SWTLRLHNLQIKDKGLYQCIIH   89 (110)
T ss_dssp             TTEEEECSCCGGGCEEEEEEEE
T ss_pred             eEEEEECCCChhHCEEEEEEEE
Confidence            5689999999999999999985

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.94  E-value=0.073  Score=44.15  Aligned_cols=24  Identities=21%  Similarity=0.574  Sum_probs=20.4

Q ss_pred             CeEEEcccCCCCCeeEEEEEcCCC
Q psy9228          21 NVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus        21 ~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      ..|+|.+|+.+|+|+|.|...+..
T Consensus        81 ~sL~I~~v~~~DsG~Y~C~v~~~~  104 (119)
T d1neua_          81 GSIVIHNLDYSDNGTFTCDVKNPP  104 (119)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEC--
T ss_pred             EEEEECCCChHHCEEEEEEEEECC
Confidence            479999999999999999997643

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.74  E-value=0.067  Score=44.91  Aligned_cols=25  Identities=40%  Similarity=0.727  Sum_probs=21.9

Q ss_pred             CeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228          21 NVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus        21 ~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ..|+|.+|+.+|+|.|.|.+.+..+
T Consensus        81 ~sL~I~~v~~~D~G~Y~C~v~~~~~  105 (126)
T d1pkoa_          81 VALRIQNVRFSDEGGYTCFFRDHSY  105 (126)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             EEEEEEEEchhHCeEEEEEEEECCC
Confidence            4899999999999999999976543

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.43  E-value=0.16  Score=40.18  Aligned_cols=41  Identities=15%  Similarity=0.118  Sum_probs=30.9

Q ss_pred             cEEEEecCC-CCCcccc--CCCeEEEcccCCCCCeeEEEEEcCC
Q psy9228           3 YIKWSRADG-LPLQRYA--EGNVLRITNARLQDSGKYKCEIQGH   43 (834)
Q Consensus         3 ~~~w~~~~~-~~~~~~~--~~~~l~~~~~~~~d~g~y~c~~~~~   43 (834)
                      .+.|.|++. -+..+..  ......|.+|+.+|+|+|.|.....
T Consensus        35 ~f~L~k~g~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   78 (96)
T d1ucta2          35 RFSLAKEGELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYN   78 (96)
T ss_dssp             EEEEEETTCSSCCSEEECSSSEEEECCSCCGGGCEEEEEEEECT
T ss_pred             EEEEEECCcccceEEcCCCcccEEEEeccccccCcEEEEEEEcC
Confidence            578999666 4444333  3467999999999999999988644

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.41  E-value=0.089  Score=42.08  Aligned_cols=43  Identities=9%  Similarity=0.095  Sum_probs=30.2

Q ss_pred             CcEEEEecCC-CCCcccc-------CCCeEEEcccCCCCCeeEEEEEcCCC
Q psy9228           2 AYIKWSRADG-LPLQRYA-------EGNVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~-------~~~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      ..+.|.|++. .+.....       ....+.|.+|..+|+|.|.|.+.+..
T Consensus        35 ~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~~~~   85 (99)
T d1ucta1          35 YLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGH   85 (99)
T ss_dssp             SEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEETT
T ss_pred             cEEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEEEEEECCC
Confidence            3678888654 3332211       34579999999999999999986543

>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.37  E-value=0.1  Score=35.53  Aligned_cols=18  Identities=28%  Similarity=0.608  Sum_probs=10.2

Q ss_pred             eeecCCCCeEEeCCCCcc
Q psy9228         190 SCQDVDGAMKCLCPIGTA  207 (834)
Q Consensus       190 ~C~~~~~~~~C~C~~g~~  207 (834)
                      .|++..++|+|.|+.||.
T Consensus        12 ~C~~~~g~~~C~C~~Gy~   29 (50)
T d1autl2          12 YCLEEVGWRRCSCAPGYK   29 (50)
T ss_dssp             EEEECSSSEEEECCTTEE
T ss_pred             EeecCCCCeEEECCCCCE
Confidence            455555555566655554

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.19  E-value=0.11  Score=41.14  Aligned_cols=42  Identities=12%  Similarity=0.170  Sum_probs=29.4

Q ss_pred             CcEEEEecCC-CCCcccc-----CCCeEEEcccCCCCCeeEEEEEcCC
Q psy9228           2 AYIKWSRADG-LPLQRYA-----EGNVLRITNARLQDSGKYKCEIQGH   43 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~-----~~~~l~~~~~~~~d~g~y~c~~~~~   43 (834)
                      .++.|.|++. .+.....     ....+.|.+|+.+|+|.|.|.+...
T Consensus        32 ~~f~L~k~g~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~   79 (95)
T d1olla1          32 VEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVG   79 (95)
T ss_dssp             CEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             cEEEEEECCCCcceeEEccCCCccEEEEEEeeeecCCCceEEEEeCCC
Confidence            4678888654 3322111     2347999999999999999998654

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.95  E-value=0.18  Score=38.66  Aligned_cols=39  Identities=26%  Similarity=0.501  Sum_probs=29.3

Q ss_pred             CcEEEEecCC-CCCccccCCCeEEEcccCC-CCCeeEEEEEcCC
Q psy9228           2 AYIKWSRADG-LPLQRYAEGNVLRITNARL-QDSGKYKCEIQGH   43 (834)
Q Consensus         2 ~~~~w~~~~~-~~~~~~~~~~~l~~~~~~~-~d~g~y~c~~~~~   43 (834)
                      .+|.|.|.+- ||   ...+..|.|.++.. +|+|-|.|.+..+
T Consensus        27 ~~I~Wkkn~~~i~---g~~~~~L~L~~FSE~e~SGyY~C~~~~~   67 (100)
T d1jbja2          27 ENLKWEKNGQELP---QKHDKHLVLQDFSEVEDSGYYVCYTPAS   67 (100)
T ss_dssp             TTCEEEETTEEEC---SCCCSEEEEESCCTTTSCEEEEEECSSC
T ss_pred             CceEEeeccccCC---CCCCcEEEEccccccccCcceEEecCCC
Confidence            3689998665 65   23455899999877 7999999987544

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.54  E-value=0.086  Score=43.91  Aligned_cols=25  Identities=28%  Similarity=0.663  Sum_probs=21.7

Q ss_pred             CeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228          21 NVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus        21 ~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      ..|+|.+|+.+|+|.|.|...+..+
T Consensus        88 ~sL~I~~v~~~D~G~Y~C~v~~~~~  112 (124)
T d1eaja_          88 ASINVTNLQLSDIGTYQCKVKKAPG  112 (124)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEETTE
T ss_pred             EEEEEcccEEccCEEEEEEEEECCC
Confidence            4799999999999999999975543

>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.14  E-value=0.1  Score=35.47  Aligned_cols=23  Identities=26%  Similarity=0.688  Sum_probs=19.2

Q ss_pred             EeccCCCCCceEeeCCCCCC----CCCCC
Q psy9228         151 LCQDAATRIGYTCICPPGFS----GDRCS  175 (834)
Q Consensus       151 ~C~~~~~~~~~~C~C~~g~~----G~~Ce  175 (834)
                      .|++.+  ++|+|.|++||.    |..|+
T Consensus        12 ~C~~~~--g~~~C~C~~Gy~L~~D~~tC~   38 (50)
T d1autl2          12 YCLEEV--GWRRCSCAPGYKLGDDLLQCH   38 (50)
T ss_dssp             EEEECS--SSEEEECCTTEEECTTSSCEE
T ss_pred             EeecCC--CCeEEECCCCCEECCCCCccc
Confidence            788876  899999999996    67774

>d1dx5i1 g.3.11.1 (I:345-387) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.63  E-value=0.28  Score=30.70  Aligned_cols=30  Identities=33%  Similarity=0.847  Sum_probs=21.6

Q ss_pred             CCCccCCCCCCCeeecCC-CCeEEeCCCCccc
Q psy9228         178 GEPCYPGACGDGSCQDVD-GAMKCLCPIGTAG  208 (834)
Q Consensus       178 ~~~C~~~~C~~g~C~~~~-~~~~C~C~~g~~G  208 (834)
                      +|+|...+|.. .|.... ++|+|.|..||.-
T Consensus         4 vDPCf~~~CE~-qCqP~~~~~Y~CiCaeGFaP   34 (43)
T d1dx5i1           4 VDPCFRANCEY-QCQPLDQTSYLCVCAEGFAP   34 (43)
T ss_dssp             CCGGGGCCCSS-EEEECSSSCEEEECCTTEEE
T ss_pred             cccccCCCcce-eeeeCCCCcceEEecccccc
Confidence            45666665542 688776 7899999999863

>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.57  E-value=0.14  Score=35.02  Aligned_cols=25  Identities=28%  Similarity=0.733  Sum_probs=19.1

Q ss_pred             eeecCCCCeEEeCCCCcc----cCccccc
Q psy9228         190 SCQDVDGAMKCLCPIGTA----GKRCEQK  214 (834)
Q Consensus       190 ~C~~~~~~~~C~C~~g~~----G~~Ce~~  214 (834)
                      .|++..++|+|.|+.||.    |+.|+..
T Consensus        13 ~C~n~~g~~~C~C~~Gy~L~~D~~tC~~~   41 (51)
T d2p3ua1          13 FCHEEQNSVVCSCARGYTLADNGKACIPT   41 (51)
T ss_dssp             EEEEETTEEEEECCTTEEECTTSSCEEES
T ss_pred             EeecCCCCeEeEcCCCCEECCCCCccccC
Confidence            677888888888888876    7777643

>d1jv2b5 g.3.11.6 (B:563-605) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Integrin beta EGF-like domains
domain: Integrin beta EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.24  E-value=0.26  Score=31.87  Aligned_cols=27  Identities=37%  Similarity=0.925  Sum_probs=21.0

Q ss_pred             CCCCCCCEeccCCCCCceEeeCC-CCCCCCCCCC
Q psy9228         144 NNCINNGLCQDAATRIGYTCICP-PGFSGDRCSV  176 (834)
Q Consensus       144 ~pC~n~g~C~~~~~~~~~~C~C~-~g~~G~~Ce~  176 (834)
                      .-|...|+|+-.      .|.|. +||.|+.||+
T Consensus        11 ~iCng~G~C~cG------~C~C~~~gy~G~~Ce~   38 (43)
T d1jv2b5          11 LLCSGRGKCECG------SCVCIQPGSYGDTCEK   38 (43)
T ss_dssp             SGGGGTEEEETT------EEEECCSSCBSTTSCB
T ss_pred             CEECCCCEEECC------EeEeCCCCccCCcccc
Confidence            358888999863      68885 7899999974

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.98  E-value=0.18  Score=40.81  Aligned_cols=22  Identities=36%  Similarity=0.632  Sum_probs=19.5

Q ss_pred             eEEEcccCCCCCeeEEEEEcCC
Q psy9228          22 VLRITNARLQDSGKYKCEIQGH   43 (834)
Q Consensus        22 ~l~~~~~~~~d~g~y~c~~~~~   43 (834)
                      .|+|.+|+.+|+|.|.|.....
T Consensus        71 ~L~I~~l~~~DsG~Y~C~v~~~   92 (108)
T d1hkfa_          71 TVTMTDLREEDSGHYWCRIYRP   92 (108)
T ss_dssp             EEEECSCCGGGCEEEEEEEECT
T ss_pred             EEEEhhhCCCCCEEEEEEEecC
Confidence            6999999999999999988633

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.83  E-value=0.18  Score=41.52  Aligned_cols=21  Identities=38%  Similarity=0.719  Sum_probs=19.2

Q ss_pred             CeEEEcccCCCCCeeEEEEEc
Q psy9228          21 NVLRITNARLQDSGKYKCEIQ   41 (834)
Q Consensus        21 ~~l~~~~~~~~d~g~y~c~~~   41 (834)
                      -.|+|.+|+.+|+|+|.|...
T Consensus        74 ~sL~I~~l~~~DsG~Y~C~v~   94 (116)
T d1xeda_          74 FVVNIAQLSQDDSGRYKCGLG   94 (116)
T ss_dssp             EEEEECSCCGGGCEEEEEEES
T ss_pred             EEEEEhhhCcCCCEEEEEEEE
Confidence            379999999999999999884

>d1jv2b4 g.3.11.6 (B:532-562) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Integrin beta EGF-like domains
domain: Integrin beta EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.82  E-value=0.099  Score=30.42  Aligned_cols=24  Identities=29%  Similarity=0.934  Sum_probs=17.8

Q ss_pred             CCCCCCEeccCCCCCceEeeCCCCCCCCCC
Q psy9228         145 NCINNGLCQDAATRIGYTCICPPGFSGDRC  174 (834)
Q Consensus       145 pC~n~g~C~~~~~~~~~~C~C~~g~~G~~C  174 (834)
                      -|.++|.|.-.      .|.|.+||+|.+|
T Consensus         4 ~C~ghG~C~CG------~C~C~~gw~G~~C   27 (31)
T d1jv2b4           4 MCSGHGQCSCG------DCLCDSDWTGYYC   27 (31)
T ss_dssp             CSCCCTTCCST------TTCCCTTEESSSS
T ss_pred             eccCCCcccCC------ceEccCCcccccc
Confidence            46667777653      3888899999888

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.75  E-value=0.18  Score=41.20  Aligned_cols=24  Identities=21%  Similarity=0.284  Sum_probs=20.8

Q ss_pred             CCeEEEcccCCCCCeeEEEEEcCC
Q psy9228          20 GNVLRITNARLQDSGKYKCEIQGH   43 (834)
Q Consensus        20 ~~~l~~~~~~~~d~g~y~c~~~~~   43 (834)
                      +..|+|.+|+.+|+|.|.|....+
T Consensus        78 ~~sL~I~~v~~~DsG~Y~C~v~~~  101 (118)
T d1qfoa_          78 VCNLLLKDLKPEDSGTYNFRFEIS  101 (118)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEECC
T ss_pred             EEEEEECCCChhHCEEEEEEEEeC
Confidence            447999999999999999998643

>d1hnfa1 b.1.1.1 (A:4-104) CD2, first domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.64  E-value=0.26  Score=38.00  Aligned_cols=27  Identities=22%  Similarity=0.399  Sum_probs=23.4

Q ss_pred             CCCeEEEcccCCCCCeeEEEEEcCCCC
Q psy9228          19 EGNVLRITNARLQDSGKYKCEIQGHDS   45 (834)
Q Consensus        19 ~~~~l~~~~~~~~d~g~y~c~~~~~~~   45 (834)
                      .++.|+|..+..+|+|+|.=.+-+.+|
T Consensus        61 ~nGtLkIK~L~~~d~GtYkv~vYd~~G   87 (101)
T d1hnfa1          61 KNGTLKIKHLKTDDQDIYKVSIYDTKG   87 (101)
T ss_dssp             TTSCEEECSCCGGGCEEEEEEEEETTS
T ss_pred             cCCcEEeeeeeecCCCcEEEEEEcCCC
Confidence            689999999999999999988855543

>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Cow (Bos taurus) [TaxId: 9913]

Probab=84.95  E-value=0.084  Score=36.15  Aligned_cols=23  Identities=22%  Similarity=0.804  Sum_probs=16.9

Q ss_pred             EeccCCCCCceEeeCCCCCC----CCCCC
Q psy9228         151 LCQDAATRIGYTCICPPGFS----GDRCS  175 (834)
Q Consensus       151 ~C~~~~~~~~~~C~C~~g~~----G~~Ce  175 (834)
                      .|++.+  ++|+|.|++||.    |..|+
T Consensus        11 ~C~~~~--~~~~C~C~~Gy~L~~D~~tC~   37 (51)
T d1kigl_          11 FCREER--SEVRCSCAHGYVLGDDSKSCV   37 (51)
T ss_dssp             CCCEET--TEECCCCCTTEEECTTSSCEE
T ss_pred             EeEcCC--CcEEeEcCCCCEECCCCCccc
Confidence            366655  789999999985    66673

>d1l3ya_ g.3.11.6 (A:) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Integrin beta EGF-like domains
domain: Integrin beta EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.86  E-value=0.21  Score=32.09  Aligned_cols=22  Identities=45%  Similarity=1.161  Sum_probs=18.0

Q ss_pred             CCCEeccCCCCCceEeeCCCCCCCCCCC
Q psy9228         148 NNGLCQDAATRIGYTCICPPGFSGDRCS  175 (834)
Q Consensus       148 n~g~C~~~~~~~~~~C~C~~g~~G~~Ce  175 (834)
                      ..|+|...      +|.|.+||+|+.||
T Consensus        19 ~hG~C~~G------~C~C~~Gw~G~~Ce   40 (41)
T d1l3ya_          19 GRGLCFCG------KCRCHPGFEGSACQ   40 (41)
T ss_dssp             HHEEEETT------EEEECTTCCTTTTC
T ss_pred             CCCeEECC------EEEcCCCCcccCcc
Confidence            46888763      69999999999996

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.12  E-value=0.17  Score=39.74  Aligned_cols=38  Identities=13%  Similarity=0.118  Sum_probs=28.2

Q ss_pred             cEEEEecCC-CCCcccc--CCCeEEEcccCCCCCeeEEEEE
Q psy9228           3 YIKWSRADG-LPLQRYA--EGNVLRITNARLQDSGKYKCEI   40 (834)
Q Consensus         3 ~~~w~~~~~-~~~~~~~--~~~~l~~~~~~~~d~g~y~c~~   40 (834)
                      .+.|.|++. -+..+..  ....+.|.+|+.+|+|.|.|..
T Consensus        33 ~f~L~Keg~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~~   73 (93)
T d1olla2          33 MFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFG   73 (93)
T ss_dssp             EEEEEEESSSCEEEEEECSSEEEEEEEECCGGGCEEEEEEC
T ss_pred             EEEEEECCCccceeecCCCceeEEEecccChhcCceEEEEe
Confidence            578889666 3333222  3467999999999999999965

>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.85  E-value=0.44  Score=32.21  Aligned_cols=15  Identities=27%  Similarity=0.620  Sum_probs=12.5

Q ss_pred             cCCCCeEEeCCCCcc
Q psy9228         193 DVDGAMKCLCPIGTA  207 (834)
Q Consensus       193 ~~~~~~~C~C~~g~~  207 (834)
                      +..++|+|.|+.||.
T Consensus        26 n~~~~y~C~C~~G~~   40 (50)
T d1ijqa2          26 PHSPKFTCACPDGML   40 (50)
T ss_dssp             TTCCSEEEECCTTCE
T ss_pred             cCCCCEEEeCCCCCE
Confidence            445799999999986

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.13  E-value=0.27  Score=40.88  Aligned_cols=20  Identities=25%  Similarity=0.546  Sum_probs=18.8

Q ss_pred             eEEEcccCCCCCeeEEEEEc
Q psy9228          22 VLRITNARLQDSGKYKCEIQ   41 (834)
Q Consensus        22 ~l~~~~~~~~d~g~y~c~~~   41 (834)
                      .|+|.+++.+|+|+|.|.+.
T Consensus        83 ~L~I~~~~~~Dsg~YyCa~~  102 (122)
T d1nezg_          83 VLTLNKFSKENEGYYFCSVI  102 (122)
T ss_dssp             EEEESSCCGGGCEEEEEEEE
T ss_pred             EEEEcccccCCCEEEEeeEe
Confidence            69999999999999999885

>d1dx5i1 g.3.11.1 (I:345-387) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.89  E-value=0.43  Score=29.83  Aligned_cols=29  Identities=34%  Similarity=0.928  Sum_probs=22.0

Q ss_pred             CccCCCCCCCCCCCCEeccCCCCCceEeeCCCCCC
Q psy9228         136 NTCKSSKHNNCINNGLCQDAATRIGYTCICPPGFS  170 (834)
Q Consensus       136 ~~C~~~~~~pC~n~g~C~~~~~~~~~~C~C~~g~~  170 (834)
                      |+|.   ..+|..  .|+... .++|.|.|..||.
T Consensus         5 DPCf---~~~CE~--qCqP~~-~~~Y~CiCaeGFa   33 (43)
T d1dx5i1           5 DPCF---RANCEY--QCQPLD-QTSYLCVCAEGFA   33 (43)
T ss_dssp             CGGG---GCCCSS--EEEECS-SSCEEEECCTTEE
T ss_pred             cccc---CCCcce--eeeeCC-CCcceEEeccccc
Confidence            5777   777765  677643 4789999999995

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.83  E-value=0.86  Score=33.98  Aligned_cols=40  Identities=28%  Similarity=0.695  Sum_probs=29.4

Q ss_pred             CcEEEEecCC---CCCc--ccc------CCC----eEEEcccCCCCCeeEEEEEc
Q psy9228           2 AYIKWSRADG---LPLQ--RYA------EGN----VLRITNARLQDSGKYKCEIQ   41 (834)
Q Consensus         2 ~~~~w~~~~~---~~~~--~~~------~~~----~l~~~~~~~~d~g~y~c~~~   41 (834)
                      ..++|-|.+|   .|..  .+.      .++    +|.+.-|-.+|.|+|.|.+.
T Consensus        34 PnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSan   88 (104)
T d1xaua_          34 PNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTN   88 (104)
T ss_dssp             CCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEE
T ss_pred             CCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecC
Confidence            3689999888   3332  221      122    78889999999999999995

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=82.72  E-value=0.29  Score=38.39  Aligned_cols=22  Identities=27%  Similarity=0.483  Sum_probs=19.6

Q ss_pred             CeEEEcccCCCCCeeEEEEEcC
Q psy9228          21 NVLRITNARLQDSGKYKCEIQG   42 (834)
Q Consensus        21 ~~l~~~~~~~~d~g~y~c~~~~   42 (834)
                      -.|+|.+++.+|+|+|-|.+..
T Consensus        57 ~sL~I~~~~~~Dsg~YyCa~~~   78 (94)
T d2gj6d1          57 VSLLIRDSQPSDSATYLCAVTT   78 (94)
T ss_dssp             EEEEECSCCGGGCEEEEEEEES
T ss_pred             EeEEeeccccCcCccceeeEec
Confidence            3699999999999999999853

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.52  E-value=0.35  Score=39.93  Aligned_cols=24  Identities=29%  Similarity=0.548  Sum_probs=20.9

Q ss_pred             CCeEEEcccCCCCCeeEEEEEcCC
Q psy9228          20 GNVLRITNARLQDSGKYKCEIQGH   43 (834)
Q Consensus        20 ~~~l~~~~~~~~d~g~y~c~~~~~   43 (834)
                      +-.|+|.+|+.+|+|.|.|....+
T Consensus        82 ~~sL~I~~v~~~DsG~Y~C~v~~~  105 (121)
T d2g5ra1          82 NCTLSIRDARMSDAGRYFFRMEKG  105 (121)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEET
T ss_pred             EEEEEECCCChHHCEEEEEEEEeC
Confidence            347999999999999999999644

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.26  E-value=0.35  Score=39.56  Aligned_cols=20  Identities=30%  Similarity=0.605  Sum_probs=18.8

Q ss_pred             eEEEcccCCCCCeeEEEEEc
Q psy9228          22 VLRITNARLQDSGKYKCEIQ   41 (834)
Q Consensus        22 ~l~~~~~~~~d~g~y~c~~~   41 (834)
                      .|+|.+|+.+|+|+|-|...
T Consensus        78 ~L~I~~l~~~Dsg~YyCa~~   97 (114)
T d1akjd_          78 VLTLSDFRRENEGYYFCSAL   97 (114)
T ss_dssp             EEEESSCCGGGCEEEEEEEE
T ss_pred             hcEEccCCCCCCEEEeEeEc
Confidence            69999999999999999985

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=81.15  E-value=0.33  Score=39.76  Aligned_cols=22  Identities=27%  Similarity=0.434  Sum_probs=19.6

Q ss_pred             CCeEEEcccCCCCCeeEEEEEc
Q psy9228          20 GNVLRITNARLQDSGKYKCEIQ   41 (834)
Q Consensus        20 ~~~l~~~~~~~~d~g~y~c~~~   41 (834)
                      ...|+|.+|+.+|+|+|-|...
T Consensus        72 ~~~L~I~~~~~~Dsg~YyCa~~   93 (115)
T d1i9ea_          72 SFHLRKASVHWSDSAVYFCAVS   93 (115)
T ss_dssp             BCCEEESSCCGGGCEEEEEEEE
T ss_pred             EEEEecccccccccceeccccc
Confidence            3579999999999999999874

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.66  E-value=0.38  Score=39.34  Aligned_cols=22  Identities=32%  Similarity=0.507  Sum_probs=19.5

Q ss_pred             eEEEcccCCCCCeeEEEEEcCC
Q psy9228          22 VLRITNARLQDSGKYKCEIQGH   43 (834)
Q Consensus        22 ~l~~~~~~~~d~g~y~c~~~~~   43 (834)
                      .|+|.+++.+|+|+|-|.+...
T Consensus        74 ~L~I~~~~~~Dsg~YyCa~~~~   95 (114)
T d3bp5a1          74 HMNILDTRRNDSGIYLCGAISL   95 (114)
T ss_dssp             EEEESSCCGGGCEEEEEEEECS
T ss_pred             EEEECccCcCCCeEEEEEEEeC
Confidence            5999999999999999998543

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=80.29  E-value=0.36  Score=39.42  Aligned_cols=23  Identities=35%  Similarity=0.642  Sum_probs=20.5

Q ss_pred             CeEEEcccCCCCCeeEEEEEcCC
Q psy9228          21 NVLRITNARLQDSGKYKCEIQGH   43 (834)
Q Consensus        21 ~~l~~~~~~~~d~g~y~c~~~~~   43 (834)
                      -.|+|.+++.+|+|+|-|.+...
T Consensus        72 ~sL~i~~~~~~Dsg~Y~Ca~~~~   94 (114)
T d2cdea1          72 SSLHITASQLSDSASYICVVSDR   94 (114)
T ss_dssp             EEEEECSCCGGGCSEEEEEEECS
T ss_pred             cccEEcccChhhCcccceeeecC
Confidence            47999999999999999999654

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.26  E-value=0.43  Score=38.85  Aligned_cols=21  Identities=38%  Similarity=0.733  Sum_probs=18.7

Q ss_pred             eEEEcccCCCCCeeEEEEEcC
Q psy9228          22 VLRITNARLQDSGKYKCEIQG   42 (834)
Q Consensus        22 ~l~~~~~~~~d~g~y~c~~~~   42 (834)
                      .|+|.+|+.+|+|.|-|....
T Consensus        77 ~Lti~~l~~~Dsg~Y~Cav~~   97 (113)
T d1smoa_          77 RVRMVNLQVEDSGLYQCVIYQ   97 (113)
T ss_dssp             EEEECSCCGGGCEEEEEEECC
T ss_pred             EEEEccCCcccCceEEEEEEC
Confidence            489999999999999999843

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=80.13  E-value=0.48  Score=38.09  Aligned_cols=24  Identities=29%  Similarity=0.340  Sum_probs=20.5

Q ss_pred             CeEEEcccCCCCCeeEEEEEcCCC
Q psy9228          21 NVLRITNARLQDSGKYKCEIQGHD   44 (834)
Q Consensus        21 ~~l~~~~~~~~d~g~y~c~~~~~~   44 (834)
                      -.|+|.+|+.+|+|+|-|......
T Consensus        71 ~~L~I~~~~~~Dsa~YyCa~~~~~   94 (106)
T d1i8ka_          71 FVFTIENTLSEDVGDYYCLQSFNV   94 (106)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSSS
T ss_pred             eeecccCCccccCEEEeEecCccc
Confidence            369999999999999999885443

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=80.09  E-value=0.68  Score=37.18  Aligned_cols=23  Identities=26%  Similarity=0.434  Sum_probs=20.2

Q ss_pred             CeEEEcccCCCCCeeEEEEEcCC
Q psy9228          21 NVLRITNARLQDSGKYKCEIQGH   43 (834)
Q Consensus        21 ~~l~~~~~~~~d~g~y~c~~~~~   43 (834)
                      ..|+|.+++.+|+|+|-|.....
T Consensus        71 ~~L~I~~~~~~Dsa~YyCa~~~~   93 (107)
T d1j1pl_          71 FTLSINSVETEDFGMYFCQQANS   93 (107)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSS
T ss_pred             EEEEEcccCcCCCEEEEEEcCCC
Confidence            48999999999999999987533

>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.01  E-value=0.3  Score=33.24  Aligned_cols=25  Identities=28%  Similarity=0.735  Sum_probs=21.3

Q ss_pred             eeeecCCCcEEcCCCCCC----CCCcccc
Q psy9228         623 MCKVTPDSYECLCSLGYA----PPNCAKR  647 (834)
Q Consensus       623 ~C~~~~~~~~C~C~~g~~----G~~Ce~~  647 (834)
                      .|++.+++|+|.|++||.    |..|+..
T Consensus        13 ~C~n~~g~~~C~C~~Gy~L~~D~~tC~~~   41 (51)
T d2p3ua1          13 FCHEEQNSVVCSCARGYTLADNGKACIPT   41 (51)
T ss_dssp             EEEEETTEEEEECCTTEEECTTSSCEEES
T ss_pred             EeecCCCCeEeEcCCCCEECCCCCccccC
Confidence            688999999999999986    7788643