Psyllid ID: psy9258

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160---
Protein Sequence
MIITKTGRRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKYKTSWEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKLANAFVEGTILLNSMHKYIPRIHLIKNSPQPSTHWETPLSRAIFAFPITEFIAVTAYANQTVKDDACLKKSMLST
Secondary Structure (PSIPRED)
cEEEccccccccccEEEEEccccccEEEEEEEEEEcccccEEEcccEEEccccccccccccccEEEcccccccHHHHHcccccccEEEEEccccccEEEEccccccccEEEEEEccccccccccccccEEEEEccccEEEEEEcccccHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
EEcEcccEEcccccEEEEEccccccEEEEEEEEEEccccEEEEEccEEEccccccccccccccEEEccccccccHHHHccEEEEcEEEEccccccccEEcccccEEEEEEEEEEccccccccccccccEEEEEcHHHcEEEEcccccHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
miitktgrrmfpslqlqvsglDQAAHYSLLVEFHlasphkykyktswepvgdaerpiahpaarlyshpaghalgsfwtgqtlHLNKIKLANAFVEGTILLNSMhkyiprihliknspqpsthwetplsraifafPITEFIAVTAYANQTVKDDACLKKSMLST
Flexible Loop (DISEMBL)
miitktgrrmfpslQLQVSGLDQAAHYSLLVEFHLASPHKYKYKTSWEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKLANAFVEGTILLNSMHKYIPRIHLIKNSPQPSTHWETPLSRAIFAFPITEFIAVTAYANQTVKDDACLKKSMLST
Low Complexity Region (SEG)
MIITKTGRRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKYKTSWEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKLANAFVEGTILLNSMHKYIPRIHLIKNSPQPSTHWETPLSRAIFAFPITEFIAVTAYANQTVKDDACLKKSMLST
Disordered region (IsUnstruct)
************SLQLQVSGLDQAAHYSLLVEFHLASPHKYKYKTSWEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKLANAFVEGTILLNSMHKYIPRIHLIKNSPQPSTHWETPLSRAIFAFPITEFIAVTAYANQTVKDDAC********
Disordered Region (DISOPRED)
MIITKTGRRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKYKTSWEPVGDAE****HPAARLYSHPAGHALGSFWTGQTLHLNKIKLANAFVEGTILLNSMHKYIPRIHLIKNSPQPST*WETPLSRAIFAFPITEFIAVTAYANQTVKDDACLKKSML**
Disordered Region (DISEMBL)
MIITKTGRRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKYKTSWEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKLANAFVEGTILLNSMHKYIPRIHLIKNSPQPSTHWETPLSRAIFAFPITEFIAVTAYANQTVKDDACLKKSMLST
Disordered Region (DISPRO)
MIITKTGRRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKYKTSWEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKLANAFVEGTILLNSMHKYIPRIHLIKNSPQPSTHWETPLSRAIFAFPITEFIAVTAYANQTVKDDACLKKS****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIITKTGRRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKYKTSWEPVGDAERPIAHPAARLYSHPAGHALGSFWTGQTLHLNKIKLANAFVEGTILLNSMHKYIPRIHLIKNSPQPSTHWETPLSRAIFAFPITEFIAVTAYANQTVKDDACLKKSMLST
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	163	2.2.26 [Sep-21-2011]
P56158	471	Brachyury protein homolog	N/A	N/A	0.877	0.303	0.431	8e-27
O01409	681	T-box-containing protein	N/A	N/A	0.883	0.211	0.402	4e-26
Q9U903	453	Brachyury protein homolog	N/A	N/A	0.865	0.311	0.437	4e-26
P55965	697	T-related protein OS=Dros	no	N/A	0.858	0.200	0.427	1e-25
Q28HY0	455	T-box protein VegT OS=Xen	yes	N/A	0.883	0.316	0.411	4e-25
Q98UD2	454	T-box protein VegT OS=Xen	N/A	N/A	0.883	0.317	0.411	5e-25
E1BEA8	457	T-box transcription facto	yes	N/A	0.883	0.315	0.411	7e-25
A1YF56	436	T-box transcription facto	N/A	N/A	0.883	0.330	0.411	8e-25
O95947	436	T-box transcription facto	yes	N/A	0.883	0.330	0.411	1e-24
D3ZJK7	436	T-box transcription facto	no	N/A	0.883	0.330	0.411	1e-24

>sp|P56158|BRAC_HALRO Brachyury protein homolog OS=Halocynthia roretzi GN=T PE=2 SV=1

 Score =  119 bits (298), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 66/153 (43%), Positives = 93/153 (60%), Gaps = 10/153 (6%)

Query: 1   MIITKTGRRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKY-KTSWEPVGDAERPIAH 59
           MI+TK+GRRMFP L+L  SGL+  + YS L++F  A  +++KY    W P G   +P  H
Sbjct: 35  MIVTKSGRRMFPVLKLTASGLEPNSMYSFLLDFAPADSNRWKYVNGEWVPGG---KPEPH 91

Query: 60  PAARLYSHPAGHALGSFWTGQTLHLNKIKLANAFVEG--TILLNSMHKYIPRIHLIKNSP 117
            A+ +Y HP     GS W  Q +  NK+KL N    G   I+LNS+HKY PRIH++K   
Sbjct: 92  AASCVYVHPDSPNFGSHWMKQPVSFNKVKLTNKGNGGGQQIMLNSLHKYEPRIHVVKVGG 151

Query: 118 QPSTHWETPLSRAIFAFPITEFIAVTAYANQTV 150
           + ++      + A F+FP ++FIAVTAY N+ V
Sbjct: 152 EAASE----RTIATFSFPESQFIAVTAYQNEEV 180

Involved in the transcriptional regulation of genes required for mesoderm differentiation.
Halocynthia roretzi (taxid: 7729)

>sp|O01409|BRC2_HALRO T-box-containing protein 2 OS=Halocynthia roretzi GN=T2 PE=2 SV=1

 Score =  117 bits (292), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 62/154 (40%), Positives = 88/154 (57%), Gaps = 10/154 (6%)

Query: 1   MIITKTGRRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKYK-TSWEPVGDAERPIAH 59
           MI+TKTGRRMFP  ++++SGLD  A Y ++++      H+YK++   W   G  E    H
Sbjct: 160 MIVTKTGRRMFPGYRIKISGLDPTAKYCVMLDIVNVDDHRYKFQHGEWTVAGRGE---PH 216

Query: 60  PAARLYSHPAGHALGSFWTGQTLHLNKIKLANAF---VEGTILLNSMHKYIPRIHLIKNS 116
              R + HP   A GS W  + +  +K+KL N+    V+G I+LNSMH+Y PR+H+++  
Sbjct: 217 LPQRFFLHPNSPANGSKWMSEIISFHKVKLTNSIGRDVDGKIVLNSMHRYQPRVHIVRTD 276

Query: 117 PQPSTHWETPLSRAIFAFPITEFIAVTAYANQTV 150
              S H +       FAFP T FI VTAY N  V
Sbjct: 277 DISSVHMQ---RLCTFAFPQTVFITVTAYQNSEV 307

Involved in the transcriptional regulation of genes required for muscle differentiation. Binds to a palindromic site (called T site) and activates gene transcription when bound to such a site.

Halocynthia roretzi (taxid: 7729)

>sp|Q9U903|BRA_ASTPE Brachyury protein homolog OS=Asterina pectinifera GN=Bra PE=2 SV=1

 Score =  117 bits (292), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 67/153 (43%), Positives = 93/153 (60%), Gaps = 12/153 (7%)

Query: 1   MIITKTGRRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKY-KTSWEPVGDAERPIAH 59
           MI+TKTGRRMFP L   V+GL+  A YS+L++F  A  H++KY    W P G  + P   
Sbjct: 58  MIVTKTGRRMFPVLSASVTGLNPNAMYSILLDFTPADEHRWKYVNGEWVPGGKPDSP--- 114

Query: 60  PAARLYSHPAGHALGSFWTGQTLHLNKIKLANAF-VEGTILLNSMHKYIPRIHLIK-NSP 117
           P +  Y HP     G+ W  Q +  +K+KL+N     G I+LNS+HKY PRIH+I+   P
Sbjct: 115 PPSTAYIHPDSPNFGAHWMKQCVSFSKVKLSNKLNGTGQIMLNSLHKYEPRIHVIRVGGP 174

Query: 118 QPSTHWETPLSRAIFAFPITEFIAVTAYANQTV 150
           +     +  L R+ F+FP T+FIAVTAY N+ +
Sbjct: 175 E-----KQRLIRS-FSFPETQFIAVTAYQNEDI 201

May be involved in the transcriptional regulation of genes required for gastrulation.

Asterina pectinifera (taxid: 7594)

>sp|P55965|BYN_DROME T-related protein OS=Drosophila melanogaster GN=byn PE=2 SV=2

 Score =  115 bits (289), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 65/152 (42%), Positives = 90/152 (59%), Gaps = 12/152 (7%)

Query: 1   MIITKTGRRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKY-KTSWEPVGDAERPIAH 59
           MI+TK GRRMFP +++  SGLD AA Y++L+EF     H++KY    W P G AE P ++
Sbjct: 107 MIVTKNGRRMFPVVKISASGLDPAAMYTVLLEFVQIDSHRWKYVNGEWVPGGKAEVPPSN 166

Query: 60  PAARLYSHPAGHALGSFWTGQTLHLNKIKLAN-AFVEGTILLNSMHKYIPRIHLIKNSPQ 118
           P   +Y HP     G+ W  + +   K+KL N     G I+LNS+HKY PR+HL++   +
Sbjct: 167 P---IYVHPESPNFGAHWMKEPISFAKVKLTNKTNGNGQIMLNSLHKYEPRVHLVRVGSE 223

Query: 119 PSTHWETPLSRAIFAFPITEFIAVTAYANQTV 150
              H  T      + FP T+FIAVTAY N+ V
Sbjct: 224 -QRHVVT------YPFPETQFIAVTAYQNEEV 248

Required for the specification of the hindgut and anal pads.

Drosophila melanogaster (taxid: 7227)

>sp|Q28HY0|VEGT_XENTR T-box protein VegT OS=Xenopus tropicalis GN=vegt PE=2 SV=1

 Score =  114 bits (284), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 63/153 (41%), Positives = 89/153 (58%), Gaps = 9/153 (5%)

Query: 1   MIITKTGRRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKY-KTSWEPVGDAERPIAH 59
           MIITK+GRRMFP  ++++ GL   A Y LLV+F      +YK+ K  WE  G AE    H
Sbjct: 68  MIITKSGRRMFPQCKIRLFGLHPYAKYMLLVDFVPLDNFRYKWNKNQWEAAGKAE---PH 124

Query: 60  PAARLYSHPAGHALGSFWTGQTLHLNKIKLANAFVE--GTILLNSMHKYIPRIHLIKNSP 117
           P  R Y HP   A G+ W    +   K+KL N  ++  G I+L+SMH+Y PR H++++  
Sbjct: 125 PPCRTYVHPDSPAPGAHWMKDAICFQKLKLTNNTLDQQGHIILHSMHRYKPRFHVVQSDD 184

Query: 118 QPSTHWETPLSRAIFAFPITEFIAVTAYANQTV 150
             ++ W       +F+FP TEF AVTAY N+ +
Sbjct: 185 MYNSPWGL---VQVFSFPETEFTAVTAYQNEKI 214

Transcription factor required for both mesoderm and endoderm formation in the embryo; signaling determinants and concentration levels may determine which germ layer is formed. Acts together with beta-catenin to activate genes that are responsible for mesoderm induction including wnt-8, eomes t/bra, siamois, mix1 and sox17. Directly binds to promoter DNA. Patterns the mesoderm along the dorsoventral and posterior axis. Activates siamois gene transcription when alone or in combination with beta-catenin, but inhibits siamois transcription in combination with pou5f1.1/oct-25.

Xenopus tropicalis (taxid: 8364)

>sp|Q98UD2|VEGT_XENBO T-box protein VegT OS=Xenopus borealis GN=vegt PE=2 SV=1

 Score =  113 bits (283), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 63/153 (41%), Positives = 89/153 (58%), Gaps = 9/153 (5%)

Query: 1   MIITKTGRRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKY-KTSWEPVGDAERPIAH 59
           MIITK+GRRMFP  ++++ GL   A Y LLV+F      +YK+ K  WE  G AE    H
Sbjct: 68  MIITKSGRRMFPQCKIRLFGLHLYAKYMLLVDFVPLDNFRYKWNKNQWEAAGKAE---PH 124

Query: 60  PAARLYSHPAGHALGSFWTGQTLHLNKIKLANAFVE--GTILLNSMHKYIPRIHLIKNSP 117
           P  R Y HP   A G+ W    +   K+KL N  ++  G I+L+SMH+Y PR H++++  
Sbjct: 125 PPCRTYVHPDSPASGAHWMKDPICFQKLKLTNNTLDQQGHIILHSMHRYKPRFHVVQSDD 184

Query: 118 QPSTHWETPLSRAIFAFPITEFIAVTAYANQTV 150
             ++ W       +F+FP TEF AVTAY N+ +
Sbjct: 185 MYNSPWGL---VQVFSFPETEFTAVTAYQNEKI 214

Transcription factor required for both mesoderm and endoderm formation in the embryo; signaling determinants and concentration levels may determine which germ layer is formed. Acts together with beta-catenin to activate genes that are responsible for mesoderm induction including wnt-8, eomes t/bra, siamois, mix1 and sox17. Directly binds to promoter DNA. Patterns the mesoderm along the dorsoventral and posterior axis. Activates siamois gene transcription when alone or in combination with beta-catenin, but inhibits siamois transcription in combination with pou5f1.1/oct-25.

Xenopus borealis (taxid: 8354)

>sp|E1BEA8|TBX6_BOVIN T-box transcription factor TBX6 OS=Bos taurus GN=TBX6 PE=3 SV=2

 Score =  112 bits (281), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 63/153 (41%), Positives = 91/153 (59%), Gaps = 9/153 (5%)

Query: 1   MIITKTGRRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKYK-TSWEPVGDAERPIAH 59
           MIITK GRRMFP+ ++ V+GLD  A Y  L++       +Y+++   WEP G AE  +  
Sbjct: 112 MIITKAGRRMFPACRVSVTGLDPEARYLFLLDVVPVDGARYRWQGRRWEPSGKAEPRLPD 171

Query: 60  PAARLYSHPAGHALGSFWTGQTLHLNKIKLANAFVE--GTILLNSMHKYIPRIHLIKNSP 117
              R+Y HP   A G+ W  Q +  +++KL N+ ++  G ++L+SMHKY PRIHL++ + 
Sbjct: 172 ---RVYIHPDSPATGAHWMRQPVSFHRVKLTNSTLDPHGHLILHSMHKYQPRIHLVRAAQ 228

Query: 118 QPSTHWETPLSRAIFAFPITEFIAVTAYANQTV 150
             S HW      A F FP T FI+VTAY N  +
Sbjct: 229 LCSQHWG---GVASFRFPETTFISVTAYQNPRI 258

T-box transcription factor that plays an essential role in the determination of the fate of axial stem cells: neural vs mesodermal. Acts in part by downregulating, a specific enhancer (N1) of SOX2, to inhibit neural development. Seems to plays also an essential role in left/right axis determination and acts through effects on Notch signaling around the node as well as through an effect on the morphology and motility of the nodal cilia.

Bos taurus (taxid: 9913)

>sp|A1YF56|TBX6_GORGO T-box transcription factor TBX6 OS=Gorilla gorilla gorilla GN=TBX6 PE=3 SV=1

 Score =  112 bits (281), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 63/153 (41%), Positives = 91/153 (59%), Gaps = 9/153 (5%)

Query: 1   MIITKTGRRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKYKT-SWEPVGDAERPIAH 59
           MIITK GRRMFP+ ++ V+GLD  A Y  L++       +Y+++   WEP G AE  +  
Sbjct: 111 MIITKAGRRMFPACRVSVTGLDPEARYLFLLDVIPVDGARYRWQGRCWEPSGKAEPRLPD 170

Query: 60  PAARLYSHPAGHALGSFWTGQTLHLNKIKLANAFVE--GTILLNSMHKYIPRIHLIKNSP 117
              R+Y HP   A G+ W  Q +  +++KL N+ ++  G ++L+SMHKY PRIHL++ + 
Sbjct: 171 ---RVYIHPDSPATGAHWMRQPVSFHRVKLTNSTLDPHGHLILHSMHKYQPRIHLVRAAQ 227

Query: 118 QPSTHWETPLSRAIFAFPITEFIAVTAYANQTV 150
             S HW      A F FP T FI+VTAY N  +
Sbjct: 228 LCSQHWG---GMASFRFPETTFISVTAYQNPRI 257

T-box transcription factor that plays an essential role in the determination of the fate of axial stem cells: neural vs mesodermal. Acts in part by downregulating, a specific enhancer (N1) of SOX2, to inhibit neural development. Seems to plays also an essential role in left/right axis determination and acts through effects on Notch signaling around the node as well as through an effect on the morphology and motility of the nodal cilia.

Gorilla gorilla gorilla (taxid: 9595)

>sp|O95947|TBX6_HUMAN T-box transcription factor TBX6 OS=Homo sapiens GN=TBX6 PE=2 SV=2

 Score =  112 bits (280), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 63/153 (41%), Positives = 91/153 (59%), Gaps = 9/153 (5%)

Query: 1   MIITKTGRRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKYKT-SWEPVGDAERPIAH 59
           MIITK GRRMFP+ ++ V+GLD  A Y  L++       +Y+++   WEP G AE  +  
Sbjct: 111 MIITKAGRRMFPACRVSVTGLDPEARYLFLLDVIPVDGARYRWQGRRWEPSGKAEPRLPD 170

Query: 60  PAARLYSHPAGHALGSFWTGQTLHLNKIKLANAFVE--GTILLNSMHKYIPRIHLIKNSP 117
              R+Y HP   A G+ W  Q +  +++KL N+ ++  G ++L+SMHKY PRIHL++ + 
Sbjct: 171 ---RVYIHPDSPATGAHWMRQPVSFHRVKLTNSTLDPHGHLILHSMHKYQPRIHLVRAAQ 227

Query: 118 QPSTHWETPLSRAIFAFPITEFIAVTAYANQTV 150
             S HW      A F FP T FI+VTAY N  +
Sbjct: 228 LCSQHWG---GMASFRFPETTFISVTAYQNPQI 257

T-box transcription factor that plays an essential role in in the determination of the fate of axial stem cells: neural vs mesodermal. Acts in part by downregulating, a specific enhancer (N1) of SOX2, to inhibit neural development. Seems to plays also an essential role in left/right axis determination and acts through effects on Notch signaling around the node as well as through an effect on the morphology and motility of the nodal cilia.

Homo sapiens (taxid: 9606)

>sp|D3ZJK7|TBX6_RAT T-box transcription factor TBX6 OS=Rattus norvegicus GN=Tbx6 PE=3 SV=1

 Score =  112 bits (280), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 63/153 (41%), Positives = 91/153 (59%), Gaps = 9/153 (5%)

Query: 1   MIITKTGRRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKYKTS-WEPVGDAERPIAH 59
           MIITK GRRMFP+ ++ V+GLD  A Y  L++       +Y+++   WEP G AE  +  
Sbjct: 111 MIITKAGRRMFPACRVSVTGLDPEARYLFLLDVVPVDGARYRWQGQHWEPSGKAEPRLPD 170

Query: 60  PAARLYSHPAGHALGSFWTGQTLHLNKIKLANAFVE--GTILLNSMHKYIPRIHLIKNSP 117
              R+Y HP   A G+ W  Q +  +++KL N+ ++  G ++L+SMHKY PRIHL++ + 
Sbjct: 171 ---RVYIHPDSPATGAHWMRQPVSFHRVKLTNSTLDPHGHLILHSMHKYQPRIHLVRATQ 227

Query: 118 QPSTHWETPLSRAIFAFPITEFIAVTAYANQTV 150
             S HW      A F FP T FI+VTAY N  +
Sbjct: 228 LCSQHWG---GVASFRFPETTFISVTAYQNPRI 257

T-box transcription factor that plays an essential role in the determination of the fate of axial stem cells: neural vs mesodermal. Acts in part by downregulating, a specific enhancer (N1) of SOX2, to inhibit neural development. Seems to plays also an essential role in left/right axis determination and acts through effects on Notch signaling around the node as well as through an effect on the morphology and motility of the nodal cilia.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	163
293339634	292	dorsocross [Megaselia abdita]	0.883	0.493	0.464	1e-27
158294954	462	AGAP005895-PA [Anopheles gambiae str. PE	0.883	0.311	0.470	1e-27
157104844	403	t-box transcription factor tbx6 [Aedes a	0.883	0.357	0.457	1e-27
170037513	398	tbx6 [Culex quinquefasciatus] gi|1678807	0.883	0.361	0.457	2e-27
312384774	499	hypothetical protein AND_01555 [Anophele	0.883	0.288	0.464	2e-27
259013438	619	T-brain homeobox protein [Saccoglossus k	0.877	0.231	0.445	5e-27
115500956	357	brachyenteron [Gryllus bimaculatus]	0.858	0.392	0.447	2e-26
11994948	640	Pf-TBRAIN [Ptychodera flava]	0.877	0.223	0.432	3e-26
158294956	525	AGAP005896-PA [Anopheles gambiae str. PE	0.883	0.274	0.437	6e-26
194865716	395	GG14369 [Drosophila erecta] gi|190653351	0.883	0.364	0.437	6e-26

>gi|293339634|gb|ADE44109.1| dorsocross [Megaselia abdita]

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/153 (46%), Positives = 91/153 (59%), Gaps = 9/153 (5%)

Query: 1   MIITKTGRRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKYKTS-WEPVGDAERPIAH 59
           M+ITKTGRRMFPS++L VSGL +  +Y +++E    +  +YK+  S W P G AE     
Sbjct: 4   MVITKTGRRMFPSMRLSVSGLKEDVNYCVMIEMVPITDCRYKFSGSQWVPAGGAE---PQ 60

Query: 60  PAARLYSHPAGHALGSFWTGQTLHLNKIKLANAFVE--GTILLNSMHKYIPRIHLIKNSP 117
              R+Y HP   ALGS W  Q +  NK+KL N  ++  G I+L SMHKY PRIH+I+ S 
Sbjct: 61  SPQRMYMHPESPALGSHWLNQPILFNKVKLTNNTLDNNGHIVLASMHKYQPRIHIIQTSD 120

Query: 118 QPSTHWETPLSRAIFAFPITEFIAVTAYANQTV 150
                W    S   F FP TEFIAVTAY N  +
Sbjct: 121 PTQIPWAPQQS---FVFPETEFIAVTAYQNDRI 150

Source: Megaselia abdita

Species: Megaselia abdita

Genus: Megaselia

Family: Phoridae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158294954|ref|XP_315924.3| AGAP005895-PA [Anopheles gambiae str. PEST] gi|157015805|gb|EAA11903.3| AGAP005895-PA [Anopheles gambiae str. PEST]

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/153 (47%), Positives = 93/153 (60%), Gaps = 9/153 (5%)

Query: 1   MIITKTGRRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKYKTS-WEPVGDAERPIAH 59
           MIITK+GRRMFPS++L V+GL+   +Y +L+E    S  ++K+  S W P G AE     
Sbjct: 76  MIITKSGRRMFPSMRLSVNGLEAEENYFILLEMVPISDCRFKFSGSQWVPAGGAE---PQ 132

Query: 60  PAARLYSHPAGHALGSFWTGQTLHLNKIKLANAFVE--GTILLNSMHKYIPRIHLIKNSP 117
              R+Y HP G ALGS WT Q +  NK+KL N  ++  G I+L SMHKY PRIH+IK S 
Sbjct: 133 SPQRIYFHPDGPALGSHWTSQPIVFNKVKLTNNTLDSNGHIVLTSMHKYQPRIHVIKASD 192

Query: 118 QPSTHWETPLSRAIFAFPITEFIAVTAYANQTV 150
                W     +  F FP TEF+AVTAY N  +
Sbjct: 193 ATQIPWA---PQQAFTFPETEFVAVTAYQNDRI 222

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157104844|ref|XP_001648597.1| t-box transcription factor tbx6 [Aedes aegypti] gi|108880245|gb|EAT44470.1| AAEL004174-PA [Aedes aegypti]

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 70/153 (45%), Positives = 93/153 (60%), Gaps = 9/153 (5%)

Query: 1   MIITKTGRRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKYKTS-WEPVGDAERPIAH 59
           MIITK+GRRMFPS++L ++GL+   +Y +L+E    S  ++K+  S W P G AE     
Sbjct: 76  MIITKSGRRMFPSMRLSINGLEADENYCVLIEMIPISDCRFKFSGSQWVPAGGAE---PQ 132

Query: 60  PAARLYSHPAGHALGSFWTGQTLHLNKIKLANAFVE--GTILLNSMHKYIPRIHLIKNSP 117
              R+Y HP   ALGS WT Q +  NK+KL N  ++  G I+L SMHKY PRIH+IK S 
Sbjct: 133 SPQRMYLHPDSPALGSHWTSQPVVFNKVKLTNNTLDSNGHIVLTSMHKYQPRIHIIKTSD 192

Query: 118 QPSTHWETPLSRAIFAFPITEFIAVTAYANQTV 150
                W     ++ F FP TEF+AVTAY N  +
Sbjct: 193 PSQIPWS---PQSAFTFPETEFVAVTAYQNDRI 222

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170037513|ref|XP_001846602.1| tbx6 [Culex quinquefasciatus] gi|167880710|gb|EDS44093.1| tbx6 [Culex quinquefasciatus]

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 70/153 (45%), Positives = 93/153 (60%), Gaps = 9/153 (5%)

Query: 1   MIITKTGRRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKYKTS-WEPVGDAERPIAH 59
           MIITK+GRRMFPS++L  +GL+   +Y +L+E    S  ++K+  S W P G AE     
Sbjct: 68  MIITKSGRRMFPSMRLSFNGLEADENYCVLIEMVPISDCRFKFSGSQWVPAGGAE---PQ 124

Query: 60  PAARLYSHPAGHALGSFWTGQTLHLNKIKLANAFVE--GTILLNSMHKYIPRIHLIKNSP 117
              R Y HP   ALGS WT Q ++ NK+KL N  ++  G I+L SMHKY PRIH+IK S 
Sbjct: 125 SPQRFYQHPDSPALGSHWTSQPVNFNKVKLTNNTLDSNGHIVLTSMHKYQPRIHVIKASE 184

Query: 118 QPSTHWETPLSRAIFAFPITEFIAVTAYANQTV 150
           +    W     ++ F FP TEF+AVTAY N  +
Sbjct: 185 REHFAWA---PQSSFTFPETEFVAVTAYQNDRI 214

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312384774|gb|EFR29422.1| hypothetical protein AND_01555 [Anopheles darlingi]

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 71/153 (46%), Positives = 93/153 (60%), Gaps = 9/153 (5%)

Query: 1   MIITKTGRRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKYKTS-WEPVGDAERPIAH 59
           MIITK+GRRMFPS++L V+GL+   +Y +L+E    S  ++K+  S W P G AE     
Sbjct: 86  MIITKSGRRMFPSMRLSVNGLEAEENYFILLEMVPISDCRFKFSGSQWVPAGGAE---PQ 142

Query: 60  PAARLYSHPAGHALGSFWTGQTLHLNKIKLANAFVE--GTILLNSMHKYIPRIHLIKNSP 117
              R+Y HP G ALG+ WT Q +  NK+KL N  ++  G I+L SMHKY PRIH+IK S 
Sbjct: 143 SPQRIYFHPDGPALGTHWTSQPIVFNKVKLTNNTLDSNGHIVLTSMHKYQPRIHVIKASD 202

Query: 118 QPSTHWETPLSRAIFAFPITEFIAVTAYANQTV 150
                W     +  F FP TEF+AVTAY N  +
Sbjct: 203 AAQIPW---APQQAFTFPETEFVAVTAYQNDRI 232

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|259013438|ref|NP_001158462.1| T-brain homeobox protein [Saccoglossus kowalevskii] gi|197320521|gb|ACH68422.1| T-brain homeobox protein [Saccoglossus kowalevskii]

 Score =  125 bits (315), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 69/155 (44%), Positives = 92/155 (59%), Gaps = 12/155 (7%)

Query: 1   MIITKTGRRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKYKTS-WEPVGDAERPIAH 59
           MIITK GRRMFP+L  + +GLDQ AHY++ V+  L+ P+ +K+++  W P G AE    H
Sbjct: 187 MIITKQGRRMFPTLSFRFTGLDQTAHYNVFVDMVLSDPNHWKFQSGKWVPCGQAEH--VH 244

Query: 60  PAARLYSHPAGHALGSFWTGQTLHLNKIKLAN--AFVEGTILLNSMHKYIPRIHLIKNSP 117
           P + +Y HP     GS W  Q +   K+KL N      G I+LNSMHKY PRIH+I+ SP
Sbjct: 245 PGSNIYIHPDSPNTGSHWMKQEVVFGKLKLTNNKGKEHGHIVLNSMHKYQPRIHVIEVSP 304

Query: 118 QPSTHWETPLSRAI--FAFPITEFIAVTAYANQTV 150
                   P  R +   +FP T+F AVTAY N  +
Sbjct: 305 N-----RPPDQRTLQTHSFPETQFFAVTAYQNTDI 334

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|115500956|dbj|BAF34148.1| brachyenteron [Gryllus bimaculatus]

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/152 (44%), Positives = 87/152 (57%), Gaps = 12/152 (7%)

Query: 1   MIITKTGRRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKY-KTSWEPVGDAERPIAH 59
           MI+TK GRRMFP +++  SGLD  A YSLL+EF    PH++KY    W P G AE P   
Sbjct: 48  MIVTKNGRRMFPVVKVSTSGLDPTAMYSLLLEFVQIDPHRWKYVNGEWVPGGKAEAP--- 104

Query: 60  PAARLYSHPAGHALGSFWTGQTLHLNKIKLAN-AFVEGTILLNSMHKYIPRIHLIKNSPQ 118
           PA  +Y HP     G+ W  + +   K+KL N     G I+LNS+HKY PR+HL+K    
Sbjct: 105 PANAVYVHPESPNFGAHWMKEPVSFAKVKLTNKTNGNGQIMLNSLHKYEPRVHLVKVGTD 164

Query: 119 PSTHWETPLSRAIFAFPITEFIAVTAYANQTV 150
           P            + FP T+FIAVTAY N+ V
Sbjct: 165 PKKI-------NTYPFPETQFIAVTAYQNEEV 189

Source: Gryllus bimaculatus

Species: Gryllus bimaculatus

Genus: Gryllus

Family: Gryllidae

Order: Orthoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|11994948|dbj|BAB19985.1| Pf-TBRAIN [Ptychodera flava]

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 67/155 (43%), Positives = 93/155 (60%), Gaps = 12/155 (7%)

Query: 1   MIITKTGRRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKYKTS-WEPVGDAERPIAH 59
           MIITK GRRMFP+L  + +GLD +AHY++ V+  L+ P+ +K+++  W P G AE    H
Sbjct: 204 MIITKQGRRMFPTLSFRFTGLDPSAHYNVFVDMVLSDPNHWKFQSGKWVPCGQAEH--VH 261

Query: 60  PAARLYSHPAGHALGSFWTGQTLHLNKIKLAN--AFVEGTILLNSMHKYIPRIHLIKNSP 117
           P + +Y HP     G+ W  Q +  +K+KL N      G I+LNSMHKY PRIH+I+ SP
Sbjct: 262 PGSNIYIHPDSPNTGNHWMKQEVVFSKLKLTNNKGKDNGHIVLNSMHKYQPRIHVIEVSP 321

Query: 118 QPSTHWETPLSRAI--FAFPITEFIAVTAYANQTV 150
                   P  R +   +FP T+F AVTAY N  +
Sbjct: 322 N-----RPPDQRTLQTHSFPETQFFAVTAYQNTDI 351

Source: Ptychodera flava

Species: Ptychodera flava

Genus: Ptychodera

Family: Ptychoderidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|158294956|ref|XP_315925.4| AGAP005896-PA [Anopheles gambiae str. PEST] gi|157015806|gb|EAA11871.5| AGAP005896-PA [Anopheles gambiae str. PEST]

 Score =  122 bits (305), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 67/153 (43%), Positives = 89/153 (58%), Gaps = 9/153 (5%)

Query: 1   MIITKTGRRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKYKTS-WEPVGDAERPIAH 59
           MIITK+GRRMFPS++L V GLD   +Y +L+E    S  ++K+  S W P G AE     
Sbjct: 75  MIITKSGRRMFPSMRLTVDGLDADTNYCVLLEMMPISDCRFKFSGSQWVPAGGAE---PQ 131

Query: 60  PAARLYSHPAGHALGSFWTGQTLHLNKIKLANAFVE--GTILLNSMHKYIPRIHLIKNSP 117
              R   HP   ALG+ W  Q +  NK+KL N  ++  G ++L SMHKY PRIH+I+ S 
Sbjct: 132 SPQRFCLHPDSPALGTHWASQPIVFNKVKLTNNTLDNNGHVVLTSMHKYQPRIHIIRTSD 191

Query: 118 QPSTHWETPLSRAIFAFPITEFIAVTAYANQTV 150
                W    ++  F FP TEF+AVTAY N  +
Sbjct: 192 PSQIPWA---AQQAFVFPETEFVAVTAYQNDRI 221

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194865716|ref|XP_001971568.1| GG14369 [Drosophila erecta] gi|190653351|gb|EDV50594.1| GG14369 [Drosophila erecta]

 Score =  122 bits (305), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 67/153 (43%), Positives = 91/153 (59%), Gaps = 9/153 (5%)

Query: 1   MIITKTGRRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKYKTS-WEPVGDAERPIAH 59
           MIITK+GRRMFPS+++ +SGL++ A Y +L+E       +YK+  S W P G AE     
Sbjct: 79  MIITKSGRRMFPSMRVSLSGLEEEASYCVLLEMVPIGDCRYKFSGSQWVPAGGAE---PQ 135

Query: 60  PAARLYSHPAGHALGSFWTGQTLHLNKIKLANAFVE--GTILLNSMHKYIPRIHLIKNSP 117
              R+Y HP   A G+ W  Q L  NK+KL N  ++  G I+L SMHKY PR+H+I++S 
Sbjct: 136 SPQRMYLHPDSPATGAHWQSQALLFNKVKLTNNTLDSSGHIVLASMHKYQPRLHIIRSSE 195

Query: 118 QPSTHWETPLSRAIFAFPITEFIAVTAYANQTV 150
                W     +  F FP TEF+AVTAY N  +
Sbjct: 196 LTQLPWAP---QQAFVFPETEFVAVTAYQNDRI 225

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	163
FB|FBgn0028789	391	Doc1 "Dorsocross1" [Drosophila	0.883	0.368	0.457	1e-27
FB|FBgn0035954	424	Doc3 "Dorsocross3" [Drosophila	0.883	0.339	0.457	9.4e-27
FB|FBgn0035956	469	Doc2 "Dorsocross2" [Drosophila	0.883	0.307	0.444	4.9e-26
UNIPROTKB|Q9HA44	295	TBX6 "T-box 6, isoform CRA_b"	0.883	0.488	0.411	2.2e-25
UNIPROTKB|O95947	436	TBX6 "T-box transcription fact	0.883	0.330	0.411	3e-25
MGI|MGI:102539	436	Tbx6 "T-box 6" [Mus musculus (	0.883	0.330	0.411	5.2e-25
RGD|1307716	436	Tbx6 "T-box 6" [Rattus norvegi	0.883	0.330	0.411	5.2e-25
UNIPROTKB|P87377	455	vegt-a "T-box protein VegT-A"	0.883	0.316	0.411	5.6e-25
FB|FBgn0011723	697	byn "brachyenteron" [Drosophil	0.858	0.200	0.427	5.9e-25
UNIPROTKB|E1BEA8	457	TBX6 "T-box transcription fact	0.883	0.315	0.411	7.5e-25

FB|FBgn0028789 Doc1 "Dorsocross1" [Drosophila melanogaster (taxid:7227)]

 Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 70/153 (45%), Positives = 95/153 (62%)

Query:     1 MIITKTGRRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKYKTS-WEPVGDAERPIAH 59
             MIITK+GRRMFPS+++ +SGL++ A Y +L+E       +YK+  S W P G AE P + 
Sbjct:    79 MIITKSGRRMFPSMRVSLSGLEEEASYCVLLEMVPIGDCRYKFSGSQWVPAGGAE-PQS- 136

Query:    60 PAARLYSHPAGHALGSFWTGQTLHLNKIKLANAFVE--GTILLNSMHKYIPRIHLIKNSP 117
             P  R+Y HP   A G+ W  Q L  NK+KL N  ++  G I+L SMHKY PR+H+I++S 
Sbjct:   137 PQ-RMYLHPDSPATGAHWQSQALLFNKVKLTNNTLDSSGHIVLASMHKYQPRLHIIRSSE 195

Query:   118 QPSTHWETPLSRAIFAFPITEFIAVTAYANQTV 150
                  W  P  +  F FP TEF+AVTAY N  +
Sbjct:   196 LTQLPW-AP--QQAFVFPETEFVAVTAYQNDRI 225

GO:0005634 "nucleus" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0007507 "heart development" evidence=TAS

GO:0035294 "determination of wing disc primordium" evidence=IMP

GO:0001700 "embryonic development via the syncytial blastoderm" evidence=IMP

GO:0003705 "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0035051 "cardiocyte differentiation" evidence=IMP

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0061327 "anterior Malpighian tubule development" evidence=IMP

FB|FBgn0035954 Doc3 "Dorsocross3" [Drosophila melanogaster (taxid:7227)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 70/153 (45%), Positives = 92/153 (60%)

Query:     1 MIITKTGRRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKYKTS-WEPVGDAERPIAH 59
             MIITK GRRMFPS+++ +SGL++ A Y +L+E       +YK+  S W P G AE P + 
Sbjct:    79 MIITKCGRRMFPSMRVSLSGLEEEASYCVLLEMVPIGDCRYKFSGSQWVPAGGAE-PQS- 136

Query:    60 PAARLYSHPAGHALGSFWTGQTLHLNKIKLANAFVE--GTILLNSMHKYIPRIHLIKNSP 117
             P  R+Y HP   A G  W  Q L  +K+KL N  ++  G I+L SMHKY PR+H+I+ S 
Sbjct:   137 PQ-RMYLHPESPATGKHWQSQALLFSKVKLTNNTLDNNGHIVLASMHKYQPRLHVIRTSD 195

Query:   118 QPSTHWETPLSRAIFAFPITEFIAVTAYANQTV 150
                  W  P  +  F FP TEFIAVTAY N  +
Sbjct:   196 LGQIPW-AP--QQAFVFPETEFIAVTAYQNDRI 225

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS;IDA

GO:0035051 "cardiocyte differentiation" evidence=IMP

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0061327 "anterior Malpighian tubule development" evidence=IMP

FB|FBgn0035956 Doc2 "Dorsocross2" [Drosophila melanogaster (taxid:7227)]

 Score = 297 (109.6 bits), Expect = 4.9e-26, P = 4.9e-26
 Identities = 68/153 (44%), Positives = 93/153 (60%)

Query:     1 MIITKTGRRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKYKTS-WEPVGDAERPIAH 59
             MIITK+GRRMFPS++L VSGL+  ++Y +L+E       +YK+  S W P G AE P + 
Sbjct:    76 MIITKSGRRMFPSMRLSVSGLEDESNYCVLLEMVPIGDCRYKFSGSQWVPAGGAE-PQS- 133

Query:    60 PAARLYSHPAGHALGSFWTGQTLHLNKIKLANAFVE--GTILLNSMHKYIPRIHLIKNSP 117
             P  R+Y HP   A G+ W  Q +  NK+KL N  ++  G I+L SMHKY PR+H+I+ + 
Sbjct:   134 PQ-RMYLHPDSPATGAHWQAQPILFNKVKLTNNTLDNSGHIVLASMHKYQPRLHVIRTAD 192

Query:   118 QPSTHWETPLSRAIFAFPITEFIAVTAYANQTV 150
                  W  P  +  F F  TEF+AVTAY N  +
Sbjct:   193 LAQIPW-AP--QQAFVFAETEFVAVTAYQNDRI 222

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IMP;IDA

GO:0003705 "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0035051 "cardiocyte differentiation" evidence=IMP

GO:0061327 "anterior Malpighian tubule development" evidence=IMP

UNIPROTKB|Q9HA44 TBX6 "T-box 6, isoform CRA_b" [Homo sapiens (taxid:9606)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 63/153 (41%), Positives = 91/153 (59%)

Query:     1 MIITKTGRRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKYK-TSWEPVGDAERPIAH 59
             MIITK GRRMFP+ ++ V+GLD  A Y  L++       +Y+++   WEP G AE  +  
Sbjct:   111 MIITKAGRRMFPACRVSVTGLDPEARYLFLLDVIPVDGARYRWQGRRWEPSGKAEPRLPD 170

Query:    60 PAARLYSHPAGHALGSFWTGQTLHLNKIKLANAFVE--GTILLNSMHKYIPRIHLIKNSP 117
                R+Y HP   A G+ W  Q +  +++KL N+ ++  G ++L+SMHKY PRIHL++ + 
Sbjct:   171 ---RVYIHPDSPATGAHWMRQPVSFHRVKLTNSTLDPHGHLILHSMHKYQPRIHLVRAAQ 227

Query:   118 QPSTHWETPLSRAIFAFPITEFIAVTAYANQTV 150
               S HW      A F FP T FI+VTAY N  +
Sbjct:   228 LCSQHWG---GMASFRFPETTFISVTAYQNPQI 257

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

UNIPROTKB|O95947 TBX6 "T-box transcription factor TBX6" [Homo sapiens (taxid:9606)]

 Score = 288 (106.4 bits), Expect = 3.0e-25, P = 3.0e-25
 Identities = 63/153 (41%), Positives = 91/153 (59%)

Query:     1 MIITKTGRRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKYK-TSWEPVGDAERPIAH 59
             MIITK GRRMFP+ ++ V+GLD  A Y  L++       +Y+++   WEP G AE  +  
Sbjct:   111 MIITKAGRRMFPACRVSVTGLDPEARYLFLLDVIPVDGARYRWQGRRWEPSGKAEPRLPD 170

Query:    60 PAARLYSHPAGHALGSFWTGQTLHLNKIKLANAFVE--GTILLNSMHKYIPRIHLIKNSP 117
                R+Y HP   A G+ W  Q +  +++KL N+ ++  G ++L+SMHKY PRIHL++ + 
Sbjct:   171 ---RVYIHPDSPATGAHWMRQPVSFHRVKLTNSTLDPHGHLILHSMHKYQPRIHLVRAAQ 227

Query:   118 QPSTHWETPLSRAIFAFPITEFIAVTAYANQTV 150
               S HW      A F FP T FI+VTAY N  +
Sbjct:   228 LCSQHWG---GMASFRFPETTFISVTAYQNPQI 257

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0001707 "mesoderm formation" evidence=IEA

GO:0001708 "cell fate specification" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0023019 "signal transduction involved in regulation of gene expression" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0009653 "anatomical structure morphogenesis" evidence=TAS

GO:0007498 "mesoderm development" evidence=TAS

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0001085 "RNA polymerase II transcription factor binding" evidence=ISS

GO:0001102 "RNA polymerase II activating transcription factor binding" evidence=ISS

GO:0001191 "RNA polymerase II transcription factor binding transcription factor activity involved in negative regulation of transcription" evidence=ISS

MGI|MGI:102539 Tbx6 "T-box 6" [Mus musculus (taxid:10090)]

 Score = 286 (105.7 bits), Expect = 5.2e-25, P = 5.2e-25
 Identities = 63/153 (41%), Positives = 91/153 (59%)

Query:     1 MIITKTGRRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKYKTS-WEPVGDAERPIAH 59
             MIITK GRRMFP+ ++ V+GLD  A Y  L++       +Y+++   WEP G AE  +  
Sbjct:   111 MIITKAGRRMFPACRVSVTGLDPEARYLFLLDVVPVDGARYRWQGQHWEPSGKAEPRLPD 170

Query:    60 PAARLYSHPAGHALGSFWTGQTLHLNKIKLANAFVE--GTILLNSMHKYIPRIHLIKNSP 117
                R+Y HP   A G+ W  Q +  +++KL N+ ++  G ++L+SMHKY PRIHL++ + 
Sbjct:   171 ---RVYIHPDSPATGAHWMRQPVSFHRVKLTNSTLDPHGHLILHSMHKYQPRIHLVRATQ 227

Query:   118 QPSTHWETPLSRAIFAFPITEFIAVTAYANQTV 150
               S HW    S   F FP T FI+VTAY N  +
Sbjct:   228 LCSQHWGGVAS---FRFPETTFISVTAYQNPRI 257

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0001085 "RNA polymerase II transcription factor binding" evidence=IPI

GO:0001102 "RNA polymerase II activating transcription factor binding" evidence=IPI

GO:0001191 "RNA polymerase II transcription factor binding transcription factor activity involved in negative regulation of transcription" evidence=IDA

GO:0001707 "mesoderm formation" evidence=IMP

GO:0001708 "cell fate specification" evidence=IMP

GO:0003677 "DNA binding" evidence=IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0023019 "signal transduction involved in regulation of gene expression" evidence=IDA

RGD|1307716 Tbx6 "T-box 6" [Rattus norvegicus (taxid:10116)]

 Score = 286 (105.7 bits), Expect = 5.2e-25, P = 5.2e-25
 Identities = 63/153 (41%), Positives = 91/153 (59%)

Query:     1 MIITKTGRRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKYKTS-WEPVGDAERPIAH 59
             MIITK GRRMFP+ ++ V+GLD  A Y  L++       +Y+++   WEP G AE  +  
Sbjct:   111 MIITKAGRRMFPACRVSVTGLDPEARYLFLLDVVPVDGARYRWQGQHWEPSGKAEPRLPD 170

Query:    60 PAARLYSHPAGHALGSFWTGQTLHLNKIKLANAFVE--GTILLNSMHKYIPRIHLIKNSP 117
                R+Y HP   A G+ W  Q +  +++KL N+ ++  G ++L+SMHKY PRIHL++ + 
Sbjct:   171 ---RVYIHPDSPATGAHWMRQPVSFHRVKLTNSTLDPHGHLILHSMHKYQPRIHLVRATQ 227

Query:   118 QPSTHWETPLSRAIFAFPITEFIAVTAYANQTV 150
               S HW    S   F FP T FI+VTAY N  +
Sbjct:   228 LCSQHWGGVAS---FRFPETTFISVTAYQNPRI 257

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0001085 "RNA polymerase II transcription factor binding" evidence=ISO

GO:0001102 "RNA polymerase II activating transcription factor binding" evidence=ISO

GO:0001191 "RNA polymerase II transcription factor binding transcription factor activity involved in negative regulation of transcription" evidence=ISO

GO:0001707 "mesoderm formation" evidence=IEA;ISO

GO:0001708 "cell fate specification" evidence=IEA;ISO

GO:0003677 "DNA binding" evidence=IEA;ISO

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0023019 "signal transduction involved in regulation of gene expression" evidence=IEA;ISO

UNIPROTKB|P87377 vegt-a "T-box protein VegT-A" [Xenopus laevis (taxid:8355)]

 Score = 287 (106.1 bits), Expect = 5.6e-25, P = 5.6e-25
 Identities = 63/153 (41%), Positives = 90/153 (58%)

Query:     1 MIITKTGRRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKY-KTSWEPVGDAERPIAH 59
             MIITK+GRRMFP  ++++ GL   A Y LLV+F      +YK+ K  WE  G AE P  H
Sbjct:    68 MIITKSGRRMFPQCKIRLFGLHPYAKYMLLVDFVPLDNFRYKWNKNQWEAAGKAE-P--H 124

Query:    60 PAARLYSHPAGHALGSFWTGQTLHLNKIKLANAFVE--GTILLNSMHKYIPRIHLIKNSP 117
             P  R Y HP   A G+ W    +   K+KL N  ++  G I+L+SMH+Y PR H++++  
Sbjct:   125 PPCRTYVHPDSPAPGAHWMKDPICFQKLKLTNNTLDQQGHIILHSMHRYKPRFHVVQSDD 184

Query:   118 QPSTHWETPLSRAIFAFPITEFIAVTAYANQTV 150
               ++ W       +F+FP TEF +VTAY N+ +
Sbjct:   185 MYNSPWGLV---QVFSFPETEFTSVTAYQNEKI 214

GO:0001707 "mesoderm formation" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005667 "transcription factor complex" evidence=IPI

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA

GO:0008134 "transcription factor binding" evidence=IPI

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP;IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

FB|FBgn0011723 byn "brachyenteron" [Drosophila melanogaster (taxid:7227)]

 Score = 293 (108.2 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 65/152 (42%), Positives = 90/152 (59%)

Query:     1 MIITKTGRRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKYKTS-WEPVGDAERPIAH 59
             MI+TK GRRMFP +++  SGLD AA Y++L+EF     H++KY    W P G AE P ++
Sbjct:   107 MIVTKNGRRMFPVVKISASGLDPAAMYTVLLEFVQIDSHRWKYVNGEWVPGGKAEVPPSN 166

Query:    60 PAARLYSHPAGHALGSFWTGQTLHLNKIKLANAFV-EGTILLNSMHKYIPRIHLIKNSPQ 118
             P   +Y HP     G+ W  + +   K+KL N     G I+LNS+HKY PR+HL++   +
Sbjct:   167 P---IYVHPESPNFGAHWMKEPISFAKVKLTNKTNGNGQIMLNSLHKYEPRVHLVRVGSE 223

Query:   119 PSTHWETPLSRAIFAFPITEFIAVTAYANQTV 150
                H  T      + FP T+FIAVTAY N+ V
Sbjct:   224 -QRHVVT------YPFPETQFIAVTAYQNEEV 248

GO:0001700 "embryonic development via the syncytial blastoderm" evidence=NAS

GO:0005634 "nucleus" evidence=ISS;NAS;IDA

GO:0003677 "DNA binding" evidence=ISS

GO:0007442 "hindgut morphogenesis" evidence=IEP;NAS;IMP;TAS

GO:0007494 "midgut development" evidence=IMP

GO:0007443 "Malpighian tubule morphogenesis" evidence=IMP

GO:0007509 "mesoderm migration involved in gastrulation" evidence=TAS

GO:0007280 "pole cell migration" evidence=TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0001709 "cell fate determination" evidence=TAS

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0000981 "sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=IDA

UNIPROTKB|E1BEA8 TBX6 "T-box transcription factor TBX6" [Bos taurus (taxid:9913)]

 Score = 286 (105.7 bits), Expect = 7.5e-25, P = 7.5e-25
 Identities = 63/153 (41%), Positives = 91/153 (59%)

Query:     1 MIITKTGRRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKYK-TSWEPVGDAERPIAH 59
             MIITK GRRMFP+ ++ V+GLD  A Y  L++       +Y+++   WEP G AE  +  
Sbjct:   112 MIITKAGRRMFPACRVSVTGLDPEARYLFLLDVVPVDGARYRWQGRRWEPSGKAEPRLPD 171

Query:    60 PAARLYSHPAGHALGSFWTGQTLHLNKIKLANAFVE--GTILLNSMHKYIPRIHLIKNSP 117
                R+Y HP   A G+ W  Q +  +++KL N+ ++  G ++L+SMHKY PRIHL++ + 
Sbjct:   172 ---RVYIHPDSPATGAHWMRQPVSFHRVKLTNSTLDPHGHLILHSMHKYQPRIHLVRAAQ 228

Query:   118 QPSTHWETPLSRAIFAFPITEFIAVTAYANQTV 150
               S HW    S   F FP T FI+VTAY N  +
Sbjct:   229 LCSQHWGGVAS---FRFPETTFISVTAYQNPRI 258

GO:0005634 "nucleus" evidence=IEA

GO:0023019 "signal transduction involved in regulation of gene expression" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0001708 "cell fate specification" evidence=IEA

GO:0001707 "mesoderm formation" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	163
pfam00907	182	pfam00907, T-box, T-box	9e-49
cd00182	188	cd00182, TBOX, T-box DNA binding domain of the T-b	3e-48
smart00425	190	smart00425, TBOX, Domain first found in the mice T	2e-44

>gnl|CDD|216184 pfam00907, T-box, T-box

 Score =  155 bits (393), Expect = 9e-49
 Identities = 69/153 (45%), Positives = 95/153 (62%), Gaps = 10/153 (6%)

Query: 1   MIITKTGRRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKY-KTSWEPVGDAERPIAH 59
           MIITK+GRRMFP+L++ VSGLD  A YS+L++F     H+YK+    W   G AE    H
Sbjct: 20  MIITKSGRRMFPTLKVSVSGLDPNALYSVLLDFVPVDDHRYKFHNGEWVVAGKAEP---H 76

Query: 60  PAARLYSHPAGHALGSFWTGQTLHLNKIKLANAFVE--GTILLNSMHKYIPRIHLIKNSP 117
           P  R+Y HP   A G+ W  Q +  +K+KL N  ++  G I+LNSMHKY PR+H+++   
Sbjct: 77  PPPRVYIHPDSPATGAHWMKQPVSFDKVKLTNNKLDGNGHIILNSMHKYQPRLHIVR-VD 135

Query: 118 QPSTHWETPLSRAIFAFPITEFIAVTAYANQTV 150
             S    T  +   F+FP T+FIAVTAY N+ +
Sbjct: 136 DESPSQRTVRT---FSFPETQFIAVTAYQNEEI 165

The T-box encodes a 180 amino acid domain that binds to DNA. Genes encoding T-box proteins are found in a wide range of animals, but not in other kingdoms such as plants. Family members are all thought to bind to the DNA consensus sequence TCACACCT. they are found exclusively in the nucleus, and perform DNA-binding and transcriptional activation/repression roles. They are generally required for development of the specific tissues they are expressed in, and mutations in T-box genes are implicated in human conditions such as DiGeorge syndrome and X-linked cleft palate, which feature malformations. Length = 182

>gnl|CDD|238106 cd00182, TBOX, T-box DNA binding domain of the T-box family of transcriptional regulators

 Score =  153 bits (390), Expect = 3e-48
 Identities = 68/154 (44%), Positives = 91/154 (59%), Gaps = 9/154 (5%)

Query: 1   MIITKTGRRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKY-KTSWEPVGDAERPIAH 59
           MIITK+GRRMFP+L+++VSGLD  A YS+L++      H+YK+    W   G AE    H
Sbjct: 22  MIITKSGRRMFPTLKVKVSGLDPNALYSVLMDLVPVDDHRYKFSGGKWVVAGKAE---PH 78

Query: 60  PAARLYSHPAGHALGSFWTGQTLHLNKIKLANAFV--EGTILLNSMHKYIPRIHLIKNSP 117
              R+Y HP   A G+ W  Q +  +K+KL N  +   G I+LNSMHKY PR+H+++   
Sbjct: 79  LPPRVYVHPDSPATGAHWMKQPVSFDKLKLTNNTLDNNGHIILNSMHKYQPRLHIVEVDD 138

Query: 118 QPSTHWETPLSRAIFAFPITEFIAVTAYANQTVK 151
                W        F+FP TEFIAVTAY NQ + 
Sbjct: 139 SSPFSWR---LVQTFSFPETEFIAVTAYQNQEIT 169

The T-box family is an ancient group that appears to play a critical role in development in all animal species. These genes were uncovered on the basis of similarity to the DNA binding domain of murine Brachyury (T) gene product, the defining feature of the family. Common features shared by T-box family members are DNA-binding and transcriptional regulatory activity, a role in development and conserved expression patterns, most of the known genes in all species being expressed in mesoderm or mesoderm precursors. Length = 188

>gnl|CDD|214656 smart00425, TBOX, Domain first found in the mice T locus (Brachyury) protein

 Score =  144 bits (365), Expect = 2e-44
 Identities = 65/165 (39%), Positives = 89/165 (53%), Gaps = 14/165 (8%)

Query: 1   MIITKTGRRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKY-KTSWEPVGDAERPIAH 59
           MI+TK+GRRMFP+L+ +VSGLD  A YS+L++       +YK+    W   G AE    H
Sbjct: 21  MIVTKSGRRMFPTLKYKVSGLDPNALYSVLMDLVPVDDKRYKFNNGKWVVAGKAEP---H 77

Query: 60  PAARLYSHPAGHALGSFWTGQTLHLNKIKLANAFV----EGTILLNSMHKYIPRIHLIKN 115
             +R+Y HP   A G+ W  Q +  +K+KL N          I+LNSMHKY PR+H+++ 
Sbjct: 78  MPSRVYVHPDSPATGAHWMKQPVSFDKVKLTNNQSDKNGHLQIILNSMHKYQPRLHIVEV 137

Query: 116 SPQPSTHWETPLSRAIFAFPITEFIAVTAYANQTVKDDACLKKSM 160
                       +   F FP T+FIAVTAY NQ +     LK   
Sbjct: 138 DDISKEILSQFKT---FVFPETQFIAVTAYQNQKITK---LKIDN 176

Length = 190

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	163
cd00182	188	TBOX T-box DNA binding domain of the T-box family	100.0
smart00425	190	TBOX Domain first found in the mice T locus (Brach	100.0
PF00907	184	T-box: T-box; InterPro: IPR001699 Transcription fa	100.0
KOG3586|consensus	437		100.0
KOG3585|consensus	328		100.0

>cd00182 TBOX T-box DNA binding domain of the T-box family of transcriptional regulators

Probab=100.00  E-value=5.5e-65  Score=396.15  Aligned_cols=156  Identities=43%  Similarity=0.736  Sum_probs=147.2

Q ss_pred             CeEecCCCCCCCcceEEEeCCCCCCCeeEEEEEEEccCcceEecc-cccccCcCCCCCCCCCCceEEecCCCCCchhhhc
Q psy9258           1 MIITKTGRRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKYKT-SWEPVGDAERPIAHPAARLYSHPAGHALGSFWTG   79 (163)
Q Consensus         1 Mivtk~GR~~FP~l~~~v~GL~p~~~Y~i~l~~~~~d~~ryk~~~-~W~~~~~~~~~~~~~~~~~~~H~~~~~tG~~WM~   79 (163)
                      |||||+||||||.|+|+|+||||+++|.|.|+|+++|++||+|.+ +|.++|++++.   .+.++|+|||||.+|++||+
T Consensus        22 MIITk~GRrmFP~l~~~vsGLdp~~~Y~v~l~~~~~D~~Rykf~~~~W~~~g~~e~~---~~~~~~~HPdsp~tG~~wM~   98 (188)
T cd00182          22 MIITKSGRRMFPTLKVKVSGLDPNALYSVLMDLVPVDDHRYKFSGGKWVVAGKAEPH---LPPRVYVHPDSPATGAHWMK   98 (188)
T ss_pred             EEEecCCcccccceEEEEeCCCcccceEEEEEEEEcCCcEEEecCCcEeEcCCCCCC---CCCceEECCCCCcCHHHHhh
Confidence            999999999999999999999999999999999999999999999 99999999988   78899999999999999999


Q ss_pred             CceeeeeeeeecCCc--cceEEecCcceeccEEEEEeCCCCCCCCCCCCCeeeEEEccccEEEEcCCCCChhhhHhhccC
Q psy9258          80 QTLHLNKIKLANAFV--EGTILLNSMHKYIPRIHLIKNSPQPSTHWETPLSRAIFAFPITEFIAVTAYANQTVKDDACLK  157 (163)
Q Consensus        80 ~~v~F~~~kitn~~~--~~~i~l~s~hkY~PvL~I~~~~~~~~~~~~~~~~~~~f~f~~T~FIaVT~YqN~~I~~lK~~~  157 (163)
                      ++|+|+++||||+..  .++|.|+|||||+|||+|+++++.....  ...+ .+|+||||+|||||+|||++|++||+.+
T Consensus        99 ~~isF~kvKlTN~~~~~~~~i~L~SmhKY~Prl~I~~~~~~~~~~--~~~~-~~f~F~eT~FiAVTaYqN~~It~lKi~~  175 (188)
T cd00182          99 QPVSFDKLKLTNNTLDNNGHIILNSMHKYQPRLHIVEVDDSSPFS--WRLV-QTFSFPETEFIAVTAYQNQEITQLKIDN  175 (188)
T ss_pred             CccccchhhcccCCCCCCCEEEEeccceEEeEEEEEEcCCCcccc--cccc-EEEECCCeEEEEEEeecCHhHhhhhhcC
Confidence            999999999999996  6799999999999999999998865421  1245 8999999999999999999999999999


Q ss_pred             cCCCC
Q psy9258         158 KSMLS  162 (163)
Q Consensus       158 n~~~~  162 (163)
                      |.||.
T Consensus       176 NpfAk  180 (188)
T cd00182         176 NPFAK  180 (188)
T ss_pred             Ccccc
Confidence            99996

The T-box family is an ancient group that appears to play a critical role in development in all animal species. These genes were uncovered on the basis of similarity to the DNA binding domain of murine Brachyury (T) gene product, the defining feature of the family. Common features shared by T-box family members are DNA-binding and transcriptional regulatory activity, a role in development and conserved expression patterns, most of the known genes in all species being expressed in mesoderm or mesoderm precursors.

>smart00425 TBOX Domain first found in the mice T locus (Brachyury) protein

Probab=100.00  E-value=5.1e-63  Score=386.22  Aligned_cols=156  Identities=40%  Similarity=0.696  Sum_probs=146.5

Q ss_pred             CeEecCCCCCCCcceEEEeCCCCCCCeeEEEEEEEccCcceEecc-cccccCcCCCCCCCCCCceEEecCCCCCchhhhc
Q psy9258           1 MIITKTGRRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKYKT-SWEPVGDAERPIAHPAARLYSHPAGHALGSFWTG   79 (163)
Q Consensus         1 Mivtk~GR~~FP~l~~~v~GL~p~~~Y~i~l~~~~~d~~ryk~~~-~W~~~~~~~~~~~~~~~~~~~H~~~~~tG~~WM~   79 (163)
                      |||||+||||||.|+|+|+||||+++|.|.|+|+++|++||+|.+ +|.++|++++.   .+.++++|||||++|++||+
T Consensus        21 MIVTk~GRrmFP~l~~~vsGLdp~~~Y~v~l~~~~~d~~rykf~~~~W~~~g~~e~~---~~~~~~~Hpdsp~tG~~wM~   97 (190)
T smart00425       21 MIVTKSGRRMFPTLKYKVSGLDPNALYSVLMDLVPVDDKRYKFNNGKWVVAGKAEPH---MPSRVYVHPDSPATGAHWMK   97 (190)
T ss_pred             EEEecCCceeCCeeEEEEeCCCccCcEEEEEEEEEccCcEEEecCCcEEEcCCCCCC---CCCceEECCCCccCHHHHhh
Confidence            999999999999999999999999999999999999999999999 99999999988   67899999999999999999


Q ss_pred             CceeeeeeeeecCCc--cceE--EecCcceeccEEEEEeCCCCCCCCCCCCCeeeEEEccccEEEEcCCCCChhhhHhhc
Q psy9258          80 QTLHLNKIKLANAFV--EGTI--LLNSMHKYIPRIHLIKNSPQPSTHWETPLSRAIFAFPITEFIAVTAYANQTVKDDAC  155 (163)
Q Consensus        80 ~~v~F~~~kitn~~~--~~~i--~l~s~hkY~PvL~I~~~~~~~~~~~~~~~~~~~f~f~~T~FIaVT~YqN~~I~~lK~  155 (163)
                      ++|+|+++||||+..  +++|  .|+|||||+|||+|+++++.....  .+.+ .+|+||||+|||||+|||++|++||+
T Consensus        98 ~~v~F~kvKlTN~~~~~~~~i~i~L~SmhkY~P~l~I~~~~~~~~~~--~~~~-~~f~F~eT~FiaVTaYqN~~it~lKi  174 (190)
T smart00425       98 QPVSFDKVKLTNNQSDKNGHLQIILNSMHKYQPRLHIVEVDDISKEI--LSQF-KTFVFPETQFIAVTAYQNQKITKLKI  174 (190)
T ss_pred             CcccccccceeccccccCCcEeeeeccCceEeeEEEEEEeCCccccc--ccce-eEEECCceEEEEEeeecccchhhccc
Confidence            999999999999988  5665  999999999999999998876543  2345 79999999999999999999999999


Q ss_pred             cCcCCCC
Q psy9258         156 LKKSMLS  162 (163)
Q Consensus       156 ~~n~~~~  162 (163)
                      .+|.||.
T Consensus       175 ~~NpfAk  181 (190)
T smart00425      175 DNNPFAK  181 (190)
T ss_pred             cCCCCcC
Confidence            9999996

>PF00907 T-box: T-box; InterPro: IPR001699 Transcription factors of the T-box family are required both for early cell-fate decisions, such as those necessary for formation of the basic vertebrate body plan, and for differentiation and organogenesis []

Probab=100.00  E-value=1.2e-59  Score=365.92  Aligned_cols=157  Identities=39%  Similarity=0.689  Sum_probs=124.4

Q ss_pred             CeEecCCCCCCCcceEEEeCCCCCCCeeEEEEEEEccCcceEecc-cccccCcCCCCCCCCCCceEEecCCCCCchhhhc
Q psy9258           1 MIITKTGRRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKYKT-SWEPVGDAERPIAHPAARLYSHPAGHALGSFWTG   79 (163)
Q Consensus         1 Mivtk~GR~~FP~l~~~v~GL~p~~~Y~i~l~~~~~d~~ryk~~~-~W~~~~~~~~~~~~~~~~~~~H~~~~~tG~~WM~   79 (163)
                      ||||+.||+|||.|+|.|+||||++.|+|+|+|+++|+++|+|.+ +|.+++++++.   .+.+.++|++|+++|++||+
T Consensus        20 Mivt~~GR~~FP~l~y~vsGL~p~~~Y~i~l~~~~~d~~~~k~~~~~W~~~~~~~~~---~~~~~~~h~~~~~~G~~WM~   96 (184)
T PF00907_consen   20 MIVTKNGRRMFPTLEYSVSGLDPDSLYSISLHFERVDNKRYKFSNGKWVPSGKAEPP---MPPRVVIHPDGPQTGSEWMK   96 (184)
T ss_dssp             EE-BTT-EE-SS-EEEEEESS-TTSEEEEEEEEEESCSEEEEEETTEEEEEEE---B--------EE-TT-SEEHHHHHH
T ss_pred             EEEeecccccccccEEEecCCCCCcceEEEEEEEEecCceeeccccccccccccccc---ccceEEEEecCcCCHHHhCc
Confidence            999999999999999999999999999999999999999999999 99999998887   67889999999999999999


Q ss_pred             CceeeeeeeeecCCc--cceEEecCcceeccEEEEEeCCCCCCCCCCCCCeeeEEEccccEEEEcCCCCChhhhHhhccC
Q psy9258          80 QTLHLNKIKLANAFV--EGTILLNSMHKYIPRIHLIKNSPQPSTHWETPLSRAIFAFPITEFIAVTAYANQTVKDDACLK  157 (163)
Q Consensus        80 ~~v~F~~~kitn~~~--~~~i~l~s~hkY~PvL~I~~~~~~~~~~~~~~~~~~~f~f~~T~FIaVT~YqN~~I~~lK~~~  157 (163)
                      +||+|+++||||+..  ++.|.|+|||||+|||+|++++++.... +...+ .+|+||+|||||||+|||++|++||+.+
T Consensus        97 ~~v~F~~vkitn~~~~~~~~I~L~s~hkY~Pvl~I~~~~~~~~~~-~~~~~-~~f~f~~t~FIaVT~Yqn~~I~~lK~~~  174 (184)
T PF00907_consen   97 NGVSFDKVKITNNKEDKKGNIFLNSMHKYQPVLHIYEVNSNGSPS-PNQPV-HEFSFPETEFIAVTAYQNEEIRQLKIDN  174 (184)
T ss_dssp             S-EEETT-EEESSTT-TST-EE--TTEEEEEEEEEEECTTTSCCC-SCSSE-EEEE-GGG-EEEESS-SSHHHHHHHHHH
T ss_pred             ccEEeehhhhhCCCCCcccceEEccccEEEEEEEEEEcCCccccc-cccce-EEeecCcCeEEeecccchhhhhhhhhcc
Confidence            999999999999997  5679999999999999999998886432 12245 9999999999999999999999999999


Q ss_pred             cCCCC
Q psy9258         158 KSMLS  162 (163)
Q Consensus       158 n~~~~  162 (163)
                      |+||.
T Consensus       175 Npfak  179 (184)
T PF00907_consen  175 NPFAK  179 (184)
T ss_dssp             -GGGG
T ss_pred             CCCcc
Confidence            99996

The T-box is defined as the minimal region within the T-box protein that is both necessary and sufficient for sequence-specific DNA binding, all members of the family so far examined bind to the DNA consensus sequence TCACACCT. The T-box is a relatively large DNA-binding domain, generally comprising about a third of the entire protein (17-26 kDa). These genes were uncovered on the basis of similarity to the DNA binding domain [] of Mus musculus (Mouse) Brachyury (T) gene product, which similarity is the defining feature of the family. The Brachyury gene is named for its phenotype, which was identified 70 years ago as a mutant mouse strain with a short blunted tail. The gene, and its paralogues, have become a well-studied model for the family, and hence much of what is known about the T-box family is derived from the murine Brachyury gene. Consistent with its nuclear location, Brachyury protein has a sequence-specific DNA-binding activity and can act as a transcriptional regulator []. Homozygous mutants for the gene undergo extensive developmental anomalies, thus rendering the mutation lethal []. The postulated role of Brachyury is as a transcription factor, regulating the specification and differentiation of posterior mesoderm during gastrulation in a dose-dependent manner []. T-box proteins tend to be expressed in specific organs or cell types, especially during development, and they are generally required for the development of those tissues, for example, Brachyury is expressed in posterior mesoderm and in the developing notochord, and it is required for the formation of these cells in mice []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1H6F_B 4A04_A 1XBR_B 2X6V_B 2X6U_A.

>KOG3586|consensus

Probab=100.00  E-value=9.7e-59  Score=386.26  Aligned_cols=158  Identities=39%  Similarity=0.683  Sum_probs=147.4

Q ss_pred             CeEecCCCCCCCcceEEEeCCCCCCCeeEEEEEEEccCcceEe--cc-cccccCcCCCCCCCCCCceEEecCCCCCchhh
Q psy9258           1 MIITKTGRRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKY--KT-SWEPVGDAERPIAHPAARLYSHPAGHALGSFW   77 (163)
Q Consensus         1 Mivtk~GR~~FP~l~~~v~GL~p~~~Y~i~l~~~~~d~~ryk~--~~-~W~~~~~~~~~~~~~~~~~~~H~~~~~tG~~W   77 (163)
                      |||||+||||||++.++|+||||.+.|.|.++++++|++||||  .. +|..+|++|+.   .++|+|.|||+|.+|+.|
T Consensus       100 MIITKsGRRMFPTvrV~~~GldP~a~Y~vlmDvVPvD~KRYRYayH~S~WlvAGkADp~---~p~R~yvHPDSP~sGe~w  176 (437)
T KOG3586|consen  100 MIITKSGRRMFPTVRVKFSGLDPMADYYVLMDVVPVDSKRYRYAYHSSSWLVAGKADPA---PPPRVYVHPDSPASGEQW  176 (437)
T ss_pred             EEEecccccccceEEEEEecCCcccceEEEEeEEecccceeeeeecccceeeecCCCCC---CCCceeeCCCCCCCHHHH
Confidence            9999999999999999999999999999999999999999996  56 99999999999   899999999999999999


Q ss_pred             hcCceeeeeeeeecCCc--cceEEecCcceeccEEEEEeCCCCCCC---CCCCCCeeeEEEccccEEEEcCCCCChhhhH
Q psy9258          78 TGQTLHLNKIKLANAFV--EGTILLNSMHKYIPRIHLIKNSPQPST---HWETPLSRAIFAFPITEFIAVTAYANQTVKD  152 (163)
Q Consensus        78 M~~~v~F~~~kitn~~~--~~~i~l~s~hkY~PvL~I~~~~~~~~~---~~~~~~~~~~f~f~~T~FIaVT~YqN~~I~~  152 (163)
                      |++.|+|+|+|||||+.  +|+|.|+|||||+||+||++.+.....   ....+.+ ++|.||||+|+|||+|||+.||+
T Consensus       177 mkqiVSFdK~KLTNNelD~nGHIILNSMHkYQPRvHvV~~~~~~~s~~~~~~~e~~-kTF~FpET~FtAVTAYQNq~ITk  255 (437)
T KOG3586|consen  177 MKQIVSFDKLKLTNNELDDNGHIILNSMHKYQPRVHVVYLDPGNDSNKYVEKNEGF-KTFVFPETVFTAVTAYQNQRITK  255 (437)
T ss_pred             HHhhhchheeeccccccccCCcEeeecccccCCceEEEEecCCCCccccccccccc-eeEeccceeEEEEeecccceeee
Confidence            99999999999999999  789999999999999999999876421   1123567 99999999999999999999999


Q ss_pred             hhccCcCCCC
Q psy9258         153 DACLKKSMLS  162 (163)
Q Consensus       153 lK~~~n~~~~  162 (163)
                      ||++.|-||.
T Consensus       256 LKI~sNPFAK  265 (437)
T KOG3586|consen  256 LKIESNPFAK  265 (437)
T ss_pred             eeeccCcccc
Confidence            9999999984

>KOG3585|consensus

Probab=100.00  E-value=2.8e-57  Score=379.40  Aligned_cols=156  Identities=39%  Similarity=0.706  Sum_probs=145.3

Q ss_pred             CeEecCCCCCCCcceEEEeCCCCCCCeeEEEEEEEccCcceEecc-cccccCcCCCCCCCCCCceEEecCCCCCchhhhc
Q psy9258           1 MIITKTGRRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKYKT-SWEPVGDAERPIAHPAARLYSHPAGHALGSFWTG   79 (163)
Q Consensus         1 Mivtk~GR~~FP~l~~~v~GL~p~~~Y~i~l~~~~~d~~ryk~~~-~W~~~~~~~~~~~~~~~~~~~H~~~~~tG~~WM~   79 (163)
                      |||||.||||||.|+|+|+||||+++|.|.|+|+++|++||+|.+ +|.++|++++.   .+.++++||||++||++||+
T Consensus        45 miitK~GRrmFP~l~~~VsGLdp~s~Y~i~l~~~~~D~~rykf~ng~W~p~gk~e~~---~~~~~~~Hpd~p~TG~~WM~  121 (328)
T KOG3585|consen   45 MIVTKRGRRMFPALKFKVSGLDPNSLYSILLELVPIDDKRYKFNNGKWVPSGKAEPH---VPSKVYVHPDGPATGAHWMS  121 (328)
T ss_pred             EEEecCCceeccccceeeccCCcccceEEEEEEEEccCceeeecCCeeccCCCCCCC---CCceEEEecCCccchHHHhc
Confidence            899999999999999999999999999999999999999999999 99999999997   88899999999999999999


Q ss_pred             CceeeeeeeeecCCc--cce-EEecCcceeccEEEEEeCCCCCCCCCCCCCeeeEEEccccEEEEcCCCCChhhhHhhcc
Q psy9258          80 QTLHLNKIKLANAFV--EGT-ILLNSMHKYIPRIHLIKNSPQPSTHWETPLSRAIFAFPITEFIAVTAYANQTVKDDACL  156 (163)
Q Consensus        80 ~~v~F~~~kitn~~~--~~~-i~l~s~hkY~PvL~I~~~~~~~~~~~~~~~~~~~f~f~~T~FIaVT~YqN~~I~~lK~~  156 (163)
                      .+|+|++|||||+..  ++. |.|+|||||+|||||++++......  -..+ .+|+|++|+|||||+|||++|++||+.
T Consensus       122 ~~V~F~kvKITN~~~~~~~~~i~l~SmHKY~P~l~i~~~~~~~~~~--~~~~-~~~~F~eT~FIaVTaYQn~~it~lKi~  198 (328)
T KOG3585|consen  122 EPVSFDKVKITNNKSDKKGKVIILNSMHKYQPVLHIVELDASLISP--EISV-QSFKFPETQFIAVTAYQNQEITKLKID  198 (328)
T ss_pred             CCcccceeEeeccccccCCceEeeecccceeeeEEEEEcccccCCC--ccce-eEEEcccceeEEeeeeecceehhhccc
Confidence            999999999999988  556 9999999999999999997332221  1245 899999999999999999999999999


Q ss_pred             CcCCCC
Q psy9258         157 KKSMLS  162 (163)
Q Consensus       157 ~n~~~~  162 (163)
                      .|+||.
T Consensus       199 ~Npfak  204 (328)
T KOG3585|consen  199 NNPFAK  204 (328)
T ss_pred             CCcccc
Confidence            999996

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	163
2x6u_A	203	Crystal Structure Of Human Tbx5 In The Dna-Free For		2e-24
4a04_A	203	Structure Of The Dna-Bound T-Box Domain Of Human Tb		5e-24
1xbr_A	184	T Domain From Xenopus Laevis Bound To Dna Length =		9e-24
1h6f_A	193	Human Tbx3, A Transcription Factor Responsible For		1e-23

>pdb|2X6U|A Chain A, Crystal Structure Of Human Tbx5 In The Dna-Free Form Length = 203

Iteration: 1
 Score =  108 bits (269), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 64/155 (41%), Positives = 88/155 (56%), Gaps = 11/155 (7%)
Query: 1   MIITKTGRRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKY-KTSWEPVGDAERPIAH 59
           MIITK GRRMFPS +++V+GL+    Y LL++   A  H+YK+    W   G AE     
Sbjct: 26  MIITKAGRRMFPSYKVKVTGLNPKTKYILLMDIVPADDHRYKFADNKWSVTGKAE----- 80
Query: 60  PA--ARLYSHPAGHALGSFWTGQTLHLNKIKLANAFVE--GTILLNSMHKYIPRIHLIKN 115
           PA   RLY HP   A G+ W  Q +   K+KL N  ++  G I+LNSMHKY PR+H++K 
Sbjct: 81  PAMPGRLYVHPDSPATGAHWMRQLVSFQKLKLTNNHLDPFGHIILNSMHKYQPRLHIVK- 139
Query: 116 SPQPSTHWETPLSRAIFAFPITEFIAVTAYANQTV 150
           + + +       +     FP T FIAVT+Y N  +
Sbjct: 140 ADENNGFGSKNTAFCTHVFPETAFIAVTSYQNHKI 174

>pdb|4A04|A Chain A, Structure Of The Dna-Bound T-Box Domain Of Human Tbx1, A Transcription Factor Associated With The Digeorge Syndrome Length = 203

Iteration: 1
 Score =  106 bits (265), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 59/157 (37%), Positives = 87/157 (55%), Gaps = 12/157 (7%)
Query: 1   MIITKTGRRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKY---KTSWEPVGDAERPI 57
           MI+TK GRRMFP+ Q+++ G+D  A Y LL++F      +Y+Y    +SW   G A+   
Sbjct: 36  MIVTKAGRRMFPTFQVKLFGMDPMADYMLLMDFVPVDDKRYRYAFHSSSWLVAGKAD--- 92
Query: 58  AHPA--ARLYSHPAGHALGSFWTGQTLHLNKIKLANAFVE--GTILLNSMHKYIPRIHLI 113
             PA   R++ HP   A G+ W  Q +  +K+KL N  ++  G I+LNSMH+Y PR H++
Sbjct: 93  --PATPGRVHYHPDSPAKGAQWMKQIVSFDKLKLTNNLLDDNGHIILNSMHRYQPRFHVV 150
Query: 114 KNSPQPSTHWETPLSRAIFAFPITEFIAVTAYANQTV 150
              P+  +      +   F F  T F AVTAY N  +
Sbjct: 151 YVDPRKDSEKYAEENFKTFVFEETRFTAVTAYQNHRI 187

>pdb|1XBR|A Chain A, T Domain From Xenopus Laevis Bound To Dna Length = 184

Iteration: 1
 Score =  105 bits (263), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 60/152 (39%), Positives = 86/152 (56%), Gaps = 12/152 (7%)
Query: 1   MIITKTGRRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKY-KTSWEPVGDAERPIAH 59
           MI+TK GRRMFP L++ +SGLD  A Y++L++F  A  H++KY    W P G   +P   
Sbjct: 22  MIVTKNGRRMFPVLKVSMSGLDPNAMYTVLLDFVAADNHRWKYVNGEWVPGG---KPEPQ 78
Query: 60  PAARLYSHPAGHALGSFWTGQTLHLNKIKLANAFV-EGTILLNSMHKYIPRIHLIKNSPQ 118
             + +Y HP     G+ W    +  +K+KL N     G I+LNS+HKY PRIH+++    
Sbjct: 79  APSCVYIHPDSPNFGAHWMKDPVSFSKVKLTNKMNGGGQIMLNSLHKYEPRIHIVRVG-- 136
Query: 119 PSTHWETPLSRAIFAFPITEFIAVTAYANQTV 150
                 T       +FP T+FIAVTAY N+ +
Sbjct: 137 -----GTQRMITSHSFPETQFIAVTAYQNEEI 163

>pdb|1H6F|A Chain A, Human Tbx3, A Transcription Factor Responsible For Ulnar- Mammary Syndrome, Bound To A Palindromic Dna Site Length = 193

Iteration: 1
 Score =  105 bits (262), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 60/153 (39%), Positives = 87/153 (56%), Gaps = 9/153 (5%)
Query: 1   MIITKTGRRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKYKTS-WEPVGDAERPIAH 59
           M+ITK+GRRMFP  +++ SGLD+ A Y LL++   A   +YK+  S W   G A+  +  
Sbjct: 25  MVITKSGRRMFPPFKVRCSGLDKKAKYILLMDIIAADDCRYKFHNSRWMVAGKADPEM-- 82
Query: 60  PAARLYSHPAGHALGSFWTGQTLHLNKIKLANAFVE--GTILLNSMHKYIPRIHLIKNSP 117
              R+Y HP   A G  W  + +  +K+KL N   +  G  +LNSMHKY PR H+++ + 
Sbjct: 83  -PKRMYIHPDSPATGEQWMSKVVTFHKLKLTNNISDKHGFTILNSMHKYQPRFHIVRAND 141
Query: 118 QPSTHWETPLSRAIFAFPITEFIAVTAYANQTV 150
                + T  +   + FP TEFIAVTAY N  +
Sbjct: 142 ILKLPYSTFRT---YLFPETEFIAVTAYQNDKI 171

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	163
2x6u_A	203	T-box transcription factor TBX5; developmental pro	3e-36
1xbr_A	184	Protein (T protein); complex (transcription factor	6e-34
4a04_A	203	T-box transcription factor TBX1; transcription, T-	1e-33
1h6f_A	193	T-box transcription factor TBX3; transcription fac	1e-33

>2x6u_A T-box transcription factor TBX5; developmental protein, DNA-binding, HOLT-ORAM-syndrome, IG-fold, nuclear protein, repressor; HET: PE4; 1.90A {Homo sapiens} PDB: 2x6v_A* Length = 203

 Score =  123 bits (309), Expect = 3e-36
 Identities = 62/155 (40%), Positives = 83/155 (53%), Gaps = 7/155 (4%)

Query: 1   MIITKTGRRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKYKTS-WEPVGDAERPIAH 59
           MIITK GRRMFPS +++V+GL+    Y LL++   A  H+YK+  + W   G AE     
Sbjct: 26  MIITKAGRRMFPSYKVKVTGLNPKTKYILLMDIVPADDHRYKFADNKWSVTGKAE---PA 82

Query: 60  PAARLYSHPAGHALGSFWTGQTLHLNKIKLANAFV--EGTILLNSMHKYIPRIHLIKNSP 117
              RLY HP   A G+ W  Q +   K+KL N  +   G I+LNSMHKY PR+H++K   
Sbjct: 83  MPGRLYVHPDSPATGAHWMRQLVSFQKLKLTNNHLDPFGHIILNSMHKYQPRLHIVKADE 142

Query: 118 QPSTHWETPLSRAIFAFPITEFIAVTAYANQTVKD 152
                 +         FP T FIAVT+Y N  +  
Sbjct: 143 NNGFGSKNTAFCT-HVFPETAFIAVTSYQNHKITQ 176

>1xbr_A Protein (T protein); complex (transcription factor/DNA), transcription factor, DNA-binding protein, transcription/DNA complex; HET: DNA; 2.50A {Xenopus laevis} SCOP: b.2.5.4 Length = 184

 Score =  117 bits (293), Expect = 6e-34
 Identities = 59/153 (38%), Positives = 84/153 (54%), Gaps = 12/153 (7%)

Query: 1   MIITKTGRRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKYKTS-WEPVGDAERPIAH 59
           MI+TK GRRMFP L++ +SGLD  A Y++L++F  A  H++KY    W P G  E     
Sbjct: 22  MIVTKNGRRMFPVLKVSMSGLDPNAMYTVLLDFVAADNHRWKYVNGEWVPGGKPE---PQ 78

Query: 60  PAARLYSHPAGHALGSFWTGQTLHLNKIKLANAF-VEGTILLNSMHKYIPRIHLIKNSPQ 118
             + +Y HP     G+ W    +  +K+KL N     G I+LNS+HKY PRIH+++    
Sbjct: 79  APSCVYIHPDSPNFGAHWMKDPVSFSKVKLTNKMNGGGQIMLNSLHKYEPRIHIVRVGGT 138

Query: 119 PSTHWETPLSRAIFAFPITEFIAVTAYANQTVK 151
                         +FP T+FIAVTAY N+ + 
Sbjct: 139 QRMITS-------HSFPETQFIAVTAYQNEEIT 164

>4a04_A T-box transcription factor TBX1; transcription, T-box proteins; HET: DNA; 2.58A {Homo sapiens} Length = 203

 Score =  116 bits (292), Expect = 1e-33
 Identities = 57/156 (36%), Positives = 84/156 (53%), Gaps = 8/156 (5%)

Query: 1   MIITKTGRRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKYKT---SWEPVGDAERPI 57
           MI+TK GRRMFP+ Q+++ G+D  A Y LL++F      +Y+Y     SW   G A+   
Sbjct: 36  MIVTKAGRRMFPTFQVKLFGMDPMADYMLLMDFVPVDDKRYRYAFHSSSWLVAGKAD--- 92

Query: 58  AHPAARLYSHPAGHALGSFWTGQTLHLNKIKLANAFVE--GTILLNSMHKYIPRIHLIKN 115
                R++ HP   A G+ W  Q +  +K+KL N  ++  G I+LNSMH+Y PR H++  
Sbjct: 93  PATPGRVHYHPDSPAKGAQWMKQIVSFDKLKLTNNLLDDNGHIILNSMHRYQPRFHVVYV 152

Query: 116 SPQPSTHWETPLSRAIFAFPITEFIAVTAYANQTVK 151
            P+  +      +   F F  T F AVTAY N  + 
Sbjct: 153 DPRKDSEKYAEENFKTFVFEETRFTAVTAYQNHRIT 188

>1h6f_A T-box transcription factor TBX3; transcription factor, TBX3, T-box transcription factor; 1.7A {Homo sapiens} SCOP: b.2.5.4 Length = 193

 Score =  116 bits (291), Expect = 1e-33
 Identities = 60/154 (38%), Positives = 85/154 (55%), Gaps = 9/154 (5%)

Query: 1   MIITKTGRRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKYKTS-WEPVGDAERPIAH 59
           M+ITK+GRRMFP  +++ SGLD+ A Y LL++   A   +YK+  S W   G A+     
Sbjct: 25  MVITKSGRRMFPPFKVRCSGLDKKAKYILLMDIIAADDCRYKFHNSRWMVAGKAD---PE 81

Query: 60  PAARLYSHPAGHALGSFWTGQTLHLNKIKLANAFV--EGTILLNSMHKYIPRIHLIKNSP 117
              R+Y HP   A G  W  + +  +K+KL N      G  +LNSMHKY PR H+++ + 
Sbjct: 82  MPKRMYIHPDSPATGEQWMSKVVTFHKLKLTNNISDKHGFTILNSMHKYQPRFHIVRAND 141

Query: 118 QPSTHWETPLSRAIFAFPITEFIAVTAYANQTVK 151
                + T  +   + FP TEFIAVTAY N  + 
Sbjct: 142 ILKLPYSTFRT---YLFPETEFIAVTAYQNDKIT 172

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	163
1xbr_A	184	Protein (T protein); complex (transcription factor	100.0
2x6u_A	203	T-box transcription factor TBX5; developmental pro	100.0
1h6f_A	193	T-box transcription factor TBX3; transcription fac	100.0
4a04_A	203	T-box transcription factor TBX1; transcription, T-	100.0

>1xbr_A Protein (T protein); complex (transcription factor/DNA), transcription factor, DNA-binding protein, transcription/DNA complex; HET: DNA; 2.50A {Xenopus laevis} SCOP: b.2.5.4

Probab=100.00  E-value=9.5e-66  Score=398.70  Aligned_cols=152  Identities=39%  Similarity=0.731  Sum_probs=145.3

Q ss_pred             CeEecCCCCCCCcceEEEeCCCCCCCeeEEEEEEEccCcceEecc-cccccCcCCCCCCCCCCceEEecCCCCCchhhhc
Q psy9258           1 MIITKTGRRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKYKT-SWEPVGDAERPIAHPAARLYSHPAGHALGSFWTG   79 (163)
Q Consensus         1 Mivtk~GR~~FP~l~~~v~GL~p~~~Y~i~l~~~~~d~~ryk~~~-~W~~~~~~~~~~~~~~~~~~~H~~~~~tG~~WM~   79 (163)
                      |||||+||||||.|+|+|+||||++.|.|.|+|+++|++||||.+ +|.++|++++.   .+.++++|||||++|++||+
T Consensus        22 MIiTk~GRrmFP~l~~~v~GLdp~~~Y~v~l~~~~~D~~ryk~~~~~W~~~gkae~~---~p~r~~~Hpdsp~~G~~WM~   98 (184)
T 1xbr_A           22 MIVTKNGRRMFPVLKVSMSGLDPNAMYTVLLDFVAADNHRWKYVNGEWVPGGKPEPQ---APSCVYIHPDSPNFGAHWMK   98 (184)
T ss_dssp             EECBTTCEECSSCCEEEEECSCTTSEEEEEEEEEESSSCEEEEETTEEEEESSCCCC---CCCCCEECTTCSEEHHHHHH
T ss_pred             EEEecCCcccCCccEEEEeCCCcccCeEEEEEEEEccCceEEEECCcEEEcCccCCC---CCcceEECCCCchhHHHHhh
Confidence            999999999999999999999999999999999999999999999 99999999998   78899999999999999999


Q ss_pred             CceeeeeeeeecCCc-cceEEecCcceeccEEEEEeCCCCCCCCCCCCCeeeEEEccccEEEEcCCCCChhhhHhhccCc
Q psy9258          80 QTLHLNKIKLANAFV-EGTILLNSMHKYIPRIHLIKNSPQPSTHWETPLSRAIFAFPITEFIAVTAYANQTVKDDACLKK  158 (163)
Q Consensus        80 ~~v~F~~~kitn~~~-~~~i~l~s~hkY~PvL~I~~~~~~~~~~~~~~~~~~~f~f~~T~FIaVT~YqN~~I~~lK~~~n  158 (163)
                      ++|+|++|||||+.. .++|.|+|||||+|||||+++++...      .+ .+|+||||+|||||+|||++|++||+++|
T Consensus        99 ~~VsF~klKlTNn~~~~~~i~L~SmHKY~PrlhI~~~~~~~~------~~-~tf~FpeT~FiAVTaYQN~~It~LKi~~N  171 (184)
T 1xbr_A           99 DPVSFSKVKLTNKMNGGGQIMLNSLHKYEPRIHIVRVGGTQR------MI-TSHSFPETQFIAVTAYQNEEITALKIKHN  171 (184)
T ss_dssp             SCEECTTCEEESSCCTTTCEECCSSSEEEEEEEEEEESSSSC------CE-EEEECGGGCEEEESSCCCHHHHHHHHHHC
T ss_pred             CCceeccccccccCCCCCeEEeccCceEEEEEEEEEeCCCcc------eE-EEEECCCcEEEEEeccCChhHhhhhhccC
Confidence            999999999999987 78999999999999999999877532      35 89999999999999999999999999999


Q ss_pred             CCCC
Q psy9258         159 SMLS  162 (163)
Q Consensus       159 ~~~~  162 (163)
                      .||.
T Consensus       172 pFAk  175 (184)
T 1xbr_A          172 PFAK  175 (184)
T ss_dssp             GGGH
T ss_pred             CCCc
Confidence            9994

>2x6u_A T-box transcription factor TBX5; developmental protein, DNA-binding, HOLT-ORAM-syndrome, IG-fold, nuclear protein, repressor; HET: PE4; 1.90A {Homo sapiens} PDB: 2x6v_A*

Probab=100.00  E-value=6.5e-66  Score=405.05  Aligned_cols=158  Identities=39%  Similarity=0.682  Sum_probs=142.2

Q ss_pred             CeEecCCCCCCCcceEEEeCCCCCCCeeEEEEEEEccCcceEecc-cccccCcCCCCCCCCCCceEEecCCCCCchhhhc
Q psy9258           1 MIITKTGRRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKYKT-SWEPVGDAERPIAHPAARLYSHPAGHALGSFWTG   79 (163)
Q Consensus         1 Mivtk~GR~~FP~l~~~v~GL~p~~~Y~i~l~~~~~d~~ryk~~~-~W~~~~~~~~~~~~~~~~~~~H~~~~~tG~~WM~   79 (163)
                      |||||+||||||.|+|+|+||||++.|.|.|+|+++|++||||.+ +|.++|++++.   .++++|+|||||++|++||+
T Consensus        26 MIiTk~GRrmFP~l~~~vsGLdp~~~Y~v~l~~~~~D~~rykf~~~~W~~~gkae~~---~p~r~y~Hpdsp~tG~~WM~  102 (203)
T 2x6u_A           26 MIITKAGRRMFPSYKVKVTGLNPKTKYILLMDIVPADDHRYKFADNKWSVTGKAEPA---MPGRLYVHPDSPATGAHWMR  102 (203)
T ss_dssp             EECBSSCEECSSCCEEEEESCCSSSEEEEEEEEEEEEEEEEEEETTEEEEEEECCCC------CCEECTTCSEEHHHHHH
T ss_pred             EEEecCCcccCceeEEEEeCCCcccCeEEEEEEEEccCceeEEeCCcEeECcccCCC---CCcceEECCCCccchHHHhh
Confidence            999999999999999999999999999999999999999999999 99999999988   78899999999999999999


Q ss_pred             CceeeeeeeeecCCc--cceEEecCcceeccEEEEEeCCCCCCCCCCCCCeeeEEEccccEEEEcCCCCChhhhHhhccC
Q psy9258          80 QTLHLNKIKLANAFV--EGTILLNSMHKYIPRIHLIKNSPQPSTHWETPLSRAIFAFPITEFIAVTAYANQTVKDDACLK  157 (163)
Q Consensus        80 ~~v~F~~~kitn~~~--~~~i~l~s~hkY~PvL~I~~~~~~~~~~~~~~~~~~~f~f~~T~FIaVT~YqN~~I~~lK~~~  157 (163)
                      ++|+|++|||||+..  .++|.|+|||||+|||||+++++......+...+ .+|+||||||||||+|||++|++||+++
T Consensus       103 ~~VsF~klKLTNn~~d~~g~I~L~SmHKYqPrlhIv~~~~~~~~~~~~~~~-~tf~FpeT~FiAVTaYQN~~It~LKi~~  181 (203)
T 2x6u_A          103 QLVSFQKLKLTNNHLDPFGHIILNSMHKYQPRLHIVKADENNGFGSKNTAF-CTHVFPETAFIAVTSYQNHKITQLKIEN  181 (203)
T ss_dssp             SCEECTTCEEECCTTCSSCCEECCTTEEEEEEEEEEECCTTSCSSSSCCCE-EEECCGGGCEEEESSCCSHHHHHHHHHH
T ss_pred             CCceeeeeeceeccCCccceEeecCCceEEEEEEEEEeCCccccCcCccce-EEEEcCCcEEEEEeeecchhhhhhhhcc
Confidence            999999999999987  6799999999999999999998765433333456 8999999999999999999999999999


Q ss_pred             cCCCC
Q psy9258         158 KSMLS  162 (163)
Q Consensus       158 n~~~~  162 (163)
                      |.||.
T Consensus       182 NPFAk  186 (203)
T 2x6u_A          182 NPFAK  186 (203)
T ss_dssp             C----
T ss_pred             CCCcc
Confidence            99995

>1h6f_A T-box transcription factor TBX3; transcription factor, TBX3, T-box transcription factor; 1.7A {Homo sapiens} SCOP: b.2.5.4

Probab=100.00  E-value=1.8e-65  Score=399.88  Aligned_cols=156  Identities=37%  Similarity=0.665  Sum_probs=146.7

Q ss_pred             CeEecCCCCCCCcceEEEeCCCCCCCeeEEEEEEEccCcceEecc-cccccCcCCCCCCCCCCceEEecCCCCCchhhhc
Q psy9258           1 MIITKTGRRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKYKT-SWEPVGDAERPIAHPAARLYSHPAGHALGSFWTG   79 (163)
Q Consensus         1 Mivtk~GR~~FP~l~~~v~GL~p~~~Y~i~l~~~~~d~~ryk~~~-~W~~~~~~~~~~~~~~~~~~~H~~~~~tG~~WM~   79 (163)
                      |||||+||||||.|+|+|+||||++.|.|.|+|+++|++||+|.+ +|.++|++++.   .+.+++.|||||++|++||+
T Consensus        25 MIiTk~GRrmFP~l~~~v~GLdp~~~Y~v~l~~~~~d~~rykf~~~~W~~~gkae~~---~p~r~~~Hpdsp~tG~~WM~  101 (193)
T 1h6f_A           25 MVITKSGRRMFPPFKVRCSGLDKKAKYILLMDIIAADDCRYKFHNSRWMVAGKADPE---MPKRMYIHPDSPATGEQWMS  101 (193)
T ss_dssp             EECCTTCBCCSSCCEEEEESCCSSSEEEEEEEEEEEEEEEEEEETTEEEEEEECCCC---CCCCCEECTTCSEEHHHHTT
T ss_pred             EEEecCCcccCceeEEEEeCCCcccceEEEEEEEEccCceeeccCCcEEECcccCCC---CCcceEecCCCcccHHHHhh
Confidence            999999999999999999999999999999999999999999999 99999999988   78899999999999999999


Q ss_pred             CceeeeeeeeecCCc--cceEEecCcceeccEEEEEeCCCCCCCCCCCCCeeeEEEccccEEEEcCCCCChhhhHhhccC
Q psy9258          80 QTLHLNKIKLANAFV--EGTILLNSMHKYIPRIHLIKNSPQPSTHWETPLSRAIFAFPITEFIAVTAYANQTVKDDACLK  157 (163)
Q Consensus        80 ~~v~F~~~kitn~~~--~~~i~l~s~hkY~PvL~I~~~~~~~~~~~~~~~~~~~f~f~~T~FIaVT~YqN~~I~~lK~~~  157 (163)
                      ++|+|++|||||+..  .++|.|+|||||+|||||+++++....  +.+.+ .+|+||||||||||+|||++|++||+++
T Consensus       102 ~~VsF~klKLTNn~~~~~~~i~L~SmHKY~PrlhI~~~~~~~~~--~~~~~-~tf~FpeT~FiAVTaYQN~~It~LKi~~  178 (193)
T 1h6f_A          102 KVVTFHKLKLTNNISDKHGFTILNSMHKYQPRFHIVRANDILKL--PYSTF-RTYLFPETEFIAVTAYQNDKITQLKIDN  178 (193)
T ss_dssp             SCEECTTCCEECCTTCCSCCEECCTTEEEEEEEEEECCSCGGGG--GGSCC-EEEECGGGCEEEESSCSCHHHHHHHHHH
T ss_pred             CCcceeeeeeeccCCCCCCcEEecCCceEeeEEEEEEcCCccCC--CCcce-EEEECCCeEEEEEeccCchhhhhhhhcC
Confidence            999999999999987  679999999999999999998765432  22356 8999999999999999999999999999


Q ss_pred             cCCCC
Q psy9258         158 KSMLS  162 (163)
Q Consensus       158 n~~~~  162 (163)
                      |.||.
T Consensus       179 NpFAk  183 (193)
T 1h6f_A          179 NPFAK  183 (193)
T ss_dssp             CGGGG
T ss_pred             CCCCc
Confidence            99995

>4a04_A T-box transcription factor TBX1; transcription, T-box proteins; HET: DNA; 2.58A {Homo sapiens}

Probab=100.00  E-value=1.2e-64  Score=397.96  Aligned_cols=158  Identities=36%  Similarity=0.680  Sum_probs=144.5

Q ss_pred             CeEecCCCCCCCcceEEEeCCCCCCCeeEEEEEEEccCcceEe--cc-cccccCcCCCCCCCCCCceEEecCCCCCchhh
Q psy9258           1 MIITKTGRRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKY--KT-SWEPVGDAERPIAHPAARLYSHPAGHALGSFW   77 (163)
Q Consensus         1 Mivtk~GR~~FP~l~~~v~GL~p~~~Y~i~l~~~~~d~~ryk~--~~-~W~~~~~~~~~~~~~~~~~~~H~~~~~tG~~W   77 (163)
                      |||||+||||||.|+|+|+||||++.|.|.|+|+++|++||||  .+ +|.++|++++.   .++++++|||||++|++|
T Consensus        36 MIITK~GRrmFP~l~~~vsGLdp~~~Y~~~l~~~~~D~~ryry~~~~~~W~~~gkae~~---~p~r~~~Hpdsp~tG~~W  112 (203)
T 4a04_A           36 MIVTKAGRRMFPTFQVKLFGMDPMADYMLLMDFVPVDDKRYRYAFHSSSWLVAGKADPA---TPGRVHYHPDSPAKGAQW  112 (203)
T ss_dssp             EECCSSCEECSSCEEEEEESCCTTSEEEEEEEEEESCSEEEEEETTTTEEEEEEECCCC---CCCCCCBCTTCSEEHHHH
T ss_pred             EEEEeCCcccCCceEEEEeCCCcccCcEEEEEEEEccCCeEEecccCCCEeECCccCCC---CCCceEEcCCCCcCHHHH
Confidence            9999999999999999999999999999999999999999998  46 99999999988   788999999999999999


Q ss_pred             hcCceeeeeeeeecCCc--cceEEecCcceeccEEEEEeCCCCCCC-CCCCCCeeeEEEccccEEEEcCCCCChhhhHhh
Q psy9258          78 TGQTLHLNKIKLANAFV--EGTILLNSMHKYIPRIHLIKNSPQPST-HWETPLSRAIFAFPITEFIAVTAYANQTVKDDA  154 (163)
Q Consensus        78 M~~~v~F~~~kitn~~~--~~~i~l~s~hkY~PvL~I~~~~~~~~~-~~~~~~~~~~f~f~~T~FIaVT~YqN~~I~~lK  154 (163)
                      |+++|+|++|||||+..  +++|.|+|||||+|||+|+++++.... ..+.+.+ .+|+||||+|||||+|||++|++||
T Consensus       113 M~~~VsF~klKLTNn~~d~~g~I~L~SmHKYqPrlhIv~~~~~~~~~~~~~~~~-~tf~FpeT~FiAVTaYQN~~It~LK  191 (203)
T 4a04_A          113 MKQIVSFDKLKLTNNLLDDNGHIILNSMHRYQPRFHVVYVDPRKDSEKYAEENF-KTFVFEETRFTAVTAYQNHRITQLK  191 (203)
T ss_dssp             HHSCEEECSCEEECCTTCCSSCEECCTTCEEEEEEEEEECCCC--------CCE-EEEECGGGCEEEESSCCCHHHHHHH
T ss_pred             hhCcceeeeeecccCccCcCCEEEEeeccccccEEEEEEcCCCcccccccCCce-EEEECCCcEEEeeCccCCHHHHHHH
Confidence            99999999999999987  679999999999999999999876432 2233456 8999999999999999999999999


Q ss_pred             ccCcCCCC
Q psy9258         155 CLKKSMLS  162 (163)
Q Consensus       155 ~~~n~~~~  162 (163)
                      +++|.||.
T Consensus       192 i~~NPFAk  199 (203)
T 4a04_A          192 IASNPFAK  199 (203)
T ss_dssp             HHHCGGGG
T ss_pred             hccCCCCc
Confidence            99999995

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	163
d1xbra_	184	b.2.5.4 (A:) T domain from Brachyury transcription	1e-48
d1h6fa_	184	b.2.5.4 (A:) T-box protein 3, tbx3 {Human (Homo sa	2e-47

>d1xbra_ b.2.5.4 (A:) T domain from Brachyury transcription factor {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 184

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: p53-like transcription factors
family: T-box
domain: T domain from Brachyury transcription factor
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score =  153 bits (387), Expect = 1e-48
 Identities = 61/162 (37%), Positives = 86/162 (53%), Gaps = 15/162 (9%)

Query: 1   MIITKTGRRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKY-KTSWEPVGDAERPIAH 59
           MI+TK GRRMFP L++ +SGLD  A Y++L++F  A  H++KY    W P G  E     
Sbjct: 22  MIVTKNGRRMFPVLKVSMSGLDPNAMYTVLLDFVAADNHRWKYVNGEWVPGGKPE---PQ 78

Query: 60  PAARLYSHPAGHALGSFWTGQTLHLNKIKLANAF-VEGTILLNSMHKYIPRIHLIKNSPQ 118
             + +Y HP     G+ W    +  +K+KL N     G I+LNS+HKY PRIH+++    
Sbjct: 79  APSCVYIHPDSPNFGAHWMKDPVSFSKVKLTNKMNGGGQIMLNSLHKYEPRIHIVRVGGT 138

Query: 119 PSTHWETPLSRAIFAFPITEFIAVTAYANQTVKDDACLKKSM 160
                         +FP T+FIAVTAY N+ +     LK   
Sbjct: 139 QRMITS-------HSFPETQFIAVTAYQNEEIT---ALKIKH 170

>d1h6fa_ b.2.5.4 (A:) T-box protein 3, tbx3 {Human (Homo sapiens) [TaxId: 9606]} Length = 184

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: p53-like transcription factors
family: T-box
domain: T-box protein 3, tbx3
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  150 bits (379), Expect = 2e-47
 Identities = 61/163 (37%), Positives = 86/163 (52%), Gaps = 12/163 (7%)

Query: 1   MIITKTGRRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKY-KTSWEPVGDAERPIAH 59
           M+ITK+GRRMFP  +++ SGLD+ A Y LL++   A   +YK+  + W   G A+     
Sbjct: 22  MVITKSGRRMFPPFKVRCSGLDKKAKYILLMDIIAADDCRYKFHNSRWMVAGKAD---PE 78

Query: 60  PAARLYSHPAGHALGSFWTGQTLHLNKIKLANAFV--EGTILLNSMHKYIPRIHLIKNSP 117
              R+Y HP   A G  W  + +  +K+KL N      G  +LNSMHKY PR H+++ + 
Sbjct: 79  MPKRMYIHPDSPATGEQWMSKVVTFHKLKLTNNISDKHGFTILNSMHKYQPRFHIVRAND 138

Query: 118 QPSTHWETPLSRAIFAFPITEFIAVTAYANQTVKDDACLKKSM 160
                + T      + FP TEFIAVTAY N  +     LK   
Sbjct: 139 ILKLPYST---FRTYLFPETEFIAVTAYQNDKIT---QLKIDN 175

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	163
d1xbra_	184	T domain from Brachyury transcription factor {Afri	100.0
d1h6fa_	184	T-box protein 3, tbx3 {Human (Homo sapiens) [TaxId	100.0
d1fnaa_	91	Fibronectin, different Fn3 modules {Human (Homo sa	81.47
d1qr4a1	87	Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}	80.91

>d1xbra_ b.2.5.4 (A:) T domain from Brachyury transcription factor {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: p53-like transcription factors
family: T-box
domain: T domain from Brachyury transcription factor
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=100.00  E-value=1.9e-66  Score=399.81  Aligned_cols=152  Identities=39%  Similarity=0.724  Sum_probs=145.6

Q ss_pred             CeEecCCCCCCCcceEEEeCCCCCCCeeEEEEEEEccCcceEecc-cccccCcCCCCCCCCCCceEEecCCCCCchhhhc
Q psy9258           1 MIITKTGRRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKYKT-SWEPVGDAERPIAHPAARLYSHPAGHALGSFWTG   79 (163)
Q Consensus         1 Mivtk~GR~~FP~l~~~v~GL~p~~~Y~i~l~~~~~d~~ryk~~~-~W~~~~~~~~~~~~~~~~~~~H~~~~~tG~~WM~   79 (163)
                      |||||+||||||.|+|+|+||||+++|.|.|+|+++|++||+|.+ +|.++|++++.   .+.++++|||||.+|++||+
T Consensus        22 MIITk~GRrmFP~l~~~vsGLdp~~~Y~v~l~~~~~D~~ryky~~~~W~~~g~~e~~---~~~~~~~Hpdsp~tG~~WM~   98 (184)
T d1xbra_          22 MIVTKNGRRMFPVLKVSMSGLDPNAMYTVLLDFVAADNHRWKYVNGEWVPGGKPEPQ---APSCVYIHPDSPNFGAHWMK   98 (184)
T ss_dssp             EECBTTCEECSSCCEEEEECSCTTSEEEEEEEEEESSSCEEEEETTEEEEESSCCCC---CCCCCEECTTCSEEHHHHHH
T ss_pred             EEEecCCcccCCceEEEEECCCcCccEEEEEEEEEccCcEEEEECCcEEECCccCCC---CCCceEECCCCCcCHHHHhh
Confidence            999999999999999999999999999999999999999999999 99999999988   78899999999999999999


Q ss_pred             CceeeeeeeeecCCc-cceEEecCcceeccEEEEEeCCCCCCCCCCCCCeeeEEEccccEEEEcCCCCChhhhHhhccCc
Q psy9258          80 QTLHLNKIKLANAFV-EGTILLNSMHKYIPRIHLIKNSPQPSTHWETPLSRAIFAFPITEFIAVTAYANQTVKDDACLKK  158 (163)
Q Consensus        80 ~~v~F~~~kitn~~~-~~~i~l~s~hkY~PvL~I~~~~~~~~~~~~~~~~~~~f~f~~T~FIaVT~YqN~~I~~lK~~~n  158 (163)
                      ++|+|+++||||+.+ .++|.|+|||||+|||+|+++++....      + .+|+||||||||||+|||++|++||+.+|
T Consensus        99 ~~i~F~klKlTN~~~~~~~i~L~SmHKYqPrl~I~~~~~~~~~------~-~~f~FpeT~FiaVTaYQN~~It~lKi~~N  171 (184)
T d1xbra_          99 DPVSFSKVKLTNKMNGGGQIMLNSLHKYEPRIHIVRVGGTQRM------I-TSHSFPETQFIAVTAYQNEEITALKIKHN  171 (184)
T ss_dssp             SCEECTTCEEESSCCTTTCEECCSSSEEEEEEEEEEESSSSCC------E-EEEECGGGCEEEESSCCCHHHHHHHHHHC
T ss_pred             CccccceeeeeccCCCCCceEEecccceeeeEEEEEeCCCccc------e-eEEEcCCeEEEEEeecCcHHHhHHHhccC
Confidence            999999999999977 789999999999999999999876543      4 89999999999999999999999999999


Q ss_pred             CCCC
Q psy9258         159 SMLS  162 (163)
Q Consensus       159 ~~~~  162 (163)
                      .||.
T Consensus       172 pFAk  175 (184)
T d1xbra_         172 PFAK  175 (184)
T ss_dssp             GGGH
T ss_pred             cccc
Confidence            9995

>d1h6fa_ b.2.5.4 (A:) T-box protein 3, tbx3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: p53-like transcription factors
family: T-box
domain: T-box protein 3, tbx3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-66  Score=398.65  Aligned_cols=156  Identities=37%  Similarity=0.677  Sum_probs=146.9

Q ss_pred             CeEecCCCCCCCcceEEEeCCCCCCCeeEEEEEEEccCcceEecc-cccccCcCCCCCCCCCCceEEecCCCCCchhhhc
Q psy9258           1 MIITKTGRRMFPSLQLQVSGLDQAAHYSLLVEFHLASPHKYKYKT-SWEPVGDAERPIAHPAARLYSHPAGHALGSFWTG   79 (163)
Q Consensus         1 Mivtk~GR~~FP~l~~~v~GL~p~~~Y~i~l~~~~~d~~ryk~~~-~W~~~~~~~~~~~~~~~~~~~H~~~~~tG~~WM~   79 (163)
                      |||||+||||||.|+|+|+||||+++|.|.|+|+++|++||+|.+ +|.++|++++.   .+.++++|||||.+|++||+
T Consensus        22 MIvTk~GRrmFP~l~~~vsGLdp~~~Y~v~l~~~~~D~~rykf~~~~W~~~g~~e~~---~~~~~~~Hpdsp~tG~~WM~   98 (184)
T d1h6fa_          22 MVITKSGRRMFPPFKVRCSGLDKKAKYILLMDIIAADDCRYKFHNSRWMVAGKADPE---MPKRMYIHPDSPATGEQWMS   98 (184)
T ss_dssp             EECCTTCBCCSSCCEEEEESCCSSSEEEEEEEEEEEEEEEEEEETTEEEEEEECCCC---CCCCCEECTTCSEEHHHHTT
T ss_pred             EEEecCCcccCceeEEEEeccCCCcceEEEEEEEECcCCeeeEeCCcEEEcccCCCC---CCCceEECCCCCcCHHHHHh
Confidence            999999999999999999999999999999999999999999999 99999999988   78899999999999999999


Q ss_pred             CceeeeeeeeecCCc--cceEEecCcceeccEEEEEeCCCCCCCCCCCCCeeeEEEccccEEEEcCCCCChhhhHhhccC
Q psy9258          80 QTLHLNKIKLANAFV--EGTILLNSMHKYIPRIHLIKNSPQPSTHWETPLSRAIFAFPITEFIAVTAYANQTVKDDACLK  157 (163)
Q Consensus        80 ~~v~F~~~kitn~~~--~~~i~l~s~hkY~PvL~I~~~~~~~~~~~~~~~~~~~f~f~~T~FIaVT~YqN~~I~~lK~~~  157 (163)
                      ++|+|+++||||+..  +++|.|+|||||+|||+|+++++......  ..+ .+|+||||||||||+|||++|++||+.+
T Consensus        99 ~~i~F~k~KltN~~~~~~~~i~L~SmhKYqPrl~I~~~~~~~~~~~--~~~-~~f~FpeT~FiAVTaYQN~~It~lKi~~  175 (184)
T d1h6fa_          99 KVVTFHKLKLTNNISDKHGFTILNSMHKYQPRFHIVRANDILKLPY--STF-RTYLFPETEFIAVTAYQNDKITQLKIDN  175 (184)
T ss_dssp             SCEECTTCCEECCTTCCSCCEECCTTEEEEEEEEEECCSCGGGGGG--SCC-EEEECGGGCEEEESSCSCHHHHHHHHHH
T ss_pred             CccccchhhhcCCccCcccchhHhhcccCCCeEEEEEeCCCCCCCc--cce-EEEECCCeEEEEEccccchhHHHHHhcc
Confidence            999999999999987  67899999999999999999987654321  245 8999999999999999999999999999


Q ss_pred             cCCCC
Q psy9258         158 KSMLS  162 (163)
Q Consensus       158 n~~~~  162 (163)
                      |.||.
T Consensus       176 NpFAk  180 (184)
T d1h6fa_         176 NPFAK  180 (184)
T ss_dssp             CGGGG
T ss_pred             Ccccc
Confidence            99996

>d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.47  E-value=0.49  Score=28.78  Aligned_cols=23  Identities=22%  Similarity=0.290  Sum_probs=19.8

Q ss_pred             cceEEEeCCCCCCCeeEEEEEEE
Q psy9258          13 SLQLQVSGLDQAAHYSLLVEFHL   35 (163)
Q Consensus        13 ~l~~~v~GL~p~~~Y~i~l~~~~   35 (163)
                      .-.|.|.||+|+..|.+.|.-.-
T Consensus        49 ~t~~~l~~L~p~t~Y~~~V~a~~   71 (91)
T d1fnaa_          49 KSTATISGLKPGVDYTITVYAVT   71 (91)
T ss_dssp             CCEEEECSCCTTCEEEEEEEEEC
T ss_pred             ccEEEeCCCCCCCEEEEEEEEEe
Confidence            45899999999999999987654

>d1qr4a1 b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=80.91  E-value=0.57  Score=28.19  Aligned_cols=23  Identities=22%  Similarity=0.368  Sum_probs=19.4

Q ss_pred             cceEEEeCCCCCCCeeEEEEEEE
Q psy9258          13 SLQLQVSGLDQAAHYSLLVEFHL   35 (163)
Q Consensus        13 ~l~~~v~GL~p~~~Y~i~l~~~~   35 (163)
                      .-.|.+.||+|...|.+.|.-.-
T Consensus        50 ~~~~~~~~L~p~t~Y~v~V~a~~   72 (87)
T d1qr4a1          50 STSFILRGLDAGTEYTISLVAEK   72 (87)
T ss_dssp             CSEEEEESCCSSCEEEEEEEEES
T ss_pred             cCEEEECCCCcCCEEEEEEEEEc
Confidence            35799999999999999987643