Psyllid ID: psy9411

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
Protein Sequence
MNENVKNNISITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGIQLLIDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNAVTTCGCGSSFSTYK
Secondary Structure (PSIPRED)
ccccccccccEEEcHHHHHHHHHHHHHHccccccEEEEEEcccccccccccEEccccccccEEEEEccEEEEEEccccccccccEEEccccccccccEEccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEcHHHHHHHHHHHHHHcccccEEEEEEEcccccccEEcEEEccccccccEEEEcccEEEEEccccHHHEcccEEEEEccccccEEEEEccccccccccccccEccc
Coil and Loop (DISEMBL)
MNENVKNNISITLTEVAIKKVSHLIKKKGNLNLKLRVFIQgggcsgfqygfmfdehtnkddiifKKNGIQLLIDSVSYQYLIGseidykddldgskfviknpnavttcgcgssfstyk
Flexible Loop (DISEMBL)
mnenvknnisitltEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGIQLLIDSVSYQYLIGSEIDYKDDLDGSKFViknpnavttcgcgssfstyk
Low Complexity Region (SEG)
MNENVKNNISITLTEVAIKKVSHlikkkgnlnlklRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGIQLLIDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNAVTTCGCGSSFSTYK
Disordered region (IsUnstruct)
*******NISITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGIQLLIDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNAVTTCGCG*******
Disordered Region (DISOPRED)
***********TLTEVAIKKVSH********NLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGIQLLIDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNAVTTCGCGSSFS***
Disordered Region (DISEMBL)
MNENVKNNISITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGIQLLIDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNAVTTCGCGSSFSTYK
Disordered Region (DISPRO)
*******NISITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGIQLLIDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNAVTTCGCGSSF****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNENVKNNISITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGIQLLIDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNAVTTCGCGSSFSTYK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	118	2.2.26 [Sep-21-2011]
Q0BI89	123	Putative iron-sulfur clus	yes	N/A	0.906	0.869	0.691	6e-42
B1YTD3	123	Putative iron--sulfur clu	yes	N/A	0.906	0.869	0.691	6e-42
A4JBK6	123	Putative iron-sulfur clus	yes	N/A	0.906	0.869	0.691	7e-42
Q39JJ8	123	Putative iron-sulfur clus	yes	N/A	0.906	0.869	0.691	1e-41
A9AH79	123	Putative iron--sulfur clu	yes	N/A	0.872	0.837	0.718	1e-41
A6SUP2	116	Putative iron-sulfur clus	yes	N/A	0.983	1.0	0.655	2e-41
B4EET4	123	Putative iron--sulfur clu	yes	N/A	0.906	0.869	0.691	3e-41
A0K4K7	123	Putative iron-sulfur clus	yes	N/A	0.906	0.869	0.691	3e-41
B1JVU6	123	Putative iron--sulfur clu	yes	N/A	0.906	0.869	0.691	3e-41
Q1BZ43	123	Putative iron-sulfur clus	yes	N/A	0.906	0.869	0.691	3e-41

>sp|Q0BI89|ERPA_BURCM Putative iron-sulfur cluster insertion protein ErpA OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=erpA PE=3 SV=1

 Score =  169 bits (427), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 74/107 (69%), Positives = 89/107 (83%)

Query: 9   ISITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNG 68
           +    T+ A  KV  LI ++GN +LKLRVF+QGGGCSGFQYGF FDE  N+DD +  KNG
Sbjct: 16  VPFVFTDAAADKVKQLIDEEGNPDLKLRVFVQGGGCSGFQYGFTFDEEVNEDDTVMNKNG 75

Query: 69  IQLLIDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNAVTTCGCGSSFS 115
           +QLLIDS+SYQYL+G+EIDYKDDL+G++FVIKNPNA TTCGCGSSFS
Sbjct: 76  VQLLIDSMSYQYLVGAEIDYKDDLNGAQFVIKNPNATTTCGCGSSFS 122

Required for insertion of 4Fe-4S clusters.
Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) (taxid: 339670)

>sp|B1YTD3|ERPA_BURA4 Putative iron--sulfur cluster insertion protein ErpA OS=Burkholderia ambifaria (strain MC40-6) GN=erpA PE=3 SV=1

 Score =  169 bits (427), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 74/107 (69%), Positives = 89/107 (83%)

Query: 9   ISITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNG 68
           +    T+ A  KV  LI ++GN +LKLRVF+QGGGCSGFQYGF FDE  N+DD +  KNG
Sbjct: 16  VPFVFTDAAADKVKQLIDEEGNPDLKLRVFVQGGGCSGFQYGFTFDEEVNEDDTVMNKNG 75

Query: 69  IQLLIDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNAVTTCGCGSSFS 115
           +QLLIDS+SYQYL+G+EIDYKDDL+G++FVIKNPNA TTCGCGSSFS
Sbjct: 76  VQLLIDSMSYQYLVGAEIDYKDDLNGAQFVIKNPNATTTCGCGSSFS 122

Required for insertion of 4Fe-4S clusters.

Burkholderia ambifaria (strain MC40-6) (taxid: 398577)

>sp|A4JBK6|ERPA1_BURVG Putative iron-sulfur cluster insertion protein ErpA 1 OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=erpA1 PE=3 SV=1

 Score =  168 bits (426), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 74/107 (69%), Positives = 89/107 (83%)

Query: 9   ISITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNG 68
           +    T+ A  KV  LI ++GN +LKLRVF+QGGGCSGFQYGF FDE  N+DD +  KNG
Sbjct: 16  VPFVFTDAAADKVKQLIDEEGNPDLKLRVFVQGGGCSGFQYGFTFDEEVNEDDTVMDKNG 75

Query: 69  IQLLIDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNAVTTCGCGSSFS 115
           +QLLIDS+SYQYL+G+EIDYKDDL+G++FVIKNPNA TTCGCGSSFS
Sbjct: 76  VQLLIDSMSYQYLVGAEIDYKDDLNGAQFVIKNPNATTTCGCGSSFS 122

Required for insertion of 4Fe-4S clusters.

Burkholderia vietnamiensis (strain G4 / LMG 22486) (taxid: 269482)

>sp|Q39JJ8|ERPA_BURS3 Putative iron-sulfur cluster insertion protein ErpA OS=Burkholderia sp. (strain 383) GN=erpA PE=3 SV=1

 Score =  168 bits (425), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 74/107 (69%), Positives = 89/107 (83%)

Query: 9   ISITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNG 68
           +    T+ A  KV  LI ++GN +LKLRVF+QGGGCSGFQYGF FDE  N+DD +  KNG
Sbjct: 16  VPFVFTDAAADKVKQLIDEEGNPDLKLRVFVQGGGCSGFQYGFTFDEEVNEDDTVMNKNG 75

Query: 69  IQLLIDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNAVTTCGCGSSFS 115
           +QLLIDS+SYQYL+G+EIDYKDDL+G++FVIKNPNA TTCGCGSSFS
Sbjct: 76  VQLLIDSMSYQYLVGAEIDYKDDLNGAQFVIKNPNASTTCGCGSSFS 122

Required for insertion of 4Fe-4S clusters.

Burkholderia sp. (strain 383) (taxid: 269483)

>sp|A9AH79|ERPA_BURM1 Putative iron--sulfur cluster insertion protein ErpA OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=erpA PE=3 SV=1

 Score =  167 bits (424), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 74/103 (71%), Positives = 88/103 (85%)

Query: 13  LTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGIQLL 72
            T+ A  KV  LI ++GN +LKLRVF+QGGGCSGFQYGF FDE  N+DD +  KNG+QLL
Sbjct: 20  FTDAAADKVKQLIDEEGNPDLKLRVFVQGGGCSGFQYGFTFDEEVNEDDTVMNKNGVQLL 79

Query: 73  IDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNAVTTCGCGSSFS 115
           IDS+SYQYL+G+EIDYKDDL+G++FVIKNPNA TTCGCGSSFS
Sbjct: 80  IDSMSYQYLVGAEIDYKDDLNGAQFVIKNPNATTTCGCGSSFS 122

Required for insertion of 4Fe-4S clusters.

Burkholderia multivorans (strain ATCC 17616 / 249) (taxid: 395019)

>sp|A6SUP2|ERPA_JANMA Putative iron-sulfur cluster insertion protein ErpA OS=Janthinobacterium sp. (strain Marseille) GN=erpA PE=3 SV=1

 Score =  167 bits (423), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 76/116 (65%), Positives = 93/116 (80%)

Query: 1   MNENVKNNISITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKD 60
           MN   +    I  ++ A  KV+ LI+++GN +LKLRVF+QGGGCSGFQYGF FDE  N+D
Sbjct: 1   MNAVAEMPSPIVFSDSAAMKVAELIEEEGNPDLKLRVFVQGGGCSGFQYGFTFDEIVNED 60

Query: 61  DIIFKKNGIQLLIDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNAVTTCGCGSSFST 116
           D    KNG+QLLIDS+SYQYL+G+EIDYKDDL+G++FVIKNPNA TTCGCGSSFS 
Sbjct: 61  DTTMTKNGVQLLIDSMSYQYLVGAEIDYKDDLEGAQFVIKNPNATTTCGCGSSFSA 116

Required for insertion of 4Fe-4S clusters.

Janthinobacterium sp. (strain Marseille) (taxid: 375286)

>sp|B4EET4|ERPA_BURCJ Putative iron--sulfur cluster insertion protein ErpA OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=erpA PE=3 SV=1

 Score =  166 bits (421), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 74/107 (69%), Positives = 89/107 (83%)

Query: 9   ISITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNG 68
           +    T+ A  KV  LI ++GN +LKLRVF+QGGGCSGFQYGF FDE  N+DD +  KNG
Sbjct: 16  LPFVFTDAAADKVKQLIDEEGNPDLKLRVFVQGGGCSGFQYGFTFDEEVNEDDTVMNKNG 75

Query: 69  IQLLIDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNAVTTCGCGSSFS 115
           +QLLIDS+SYQYL+G+EIDYKDDL+G++FVIKNPNA TTCGCGSSFS
Sbjct: 76  VQLLIDSMSYQYLVGAEIDYKDDLNGAQFVIKNPNATTTCGCGSSFS 122

Required for insertion of 4Fe-4S clusters.

Burkholderia cepacia (strain J2315 / LMG 16656) (taxid: 216591)

>sp|A0K4K7|ERPA_BURCH Putative iron-sulfur cluster insertion protein ErpA OS=Burkholderia cenocepacia (strain HI2424) GN=erpA PE=3 SV=1

 Score =  166 bits (421), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 74/107 (69%), Positives = 89/107 (83%)

Query: 9   ISITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNG 68
           +    T+ A  KV  LI ++GN +LKLRVF+QGGGCSGFQYGF FDE  N+DD +  KNG
Sbjct: 16  LPFVFTDAAADKVKQLIDEEGNPDLKLRVFVQGGGCSGFQYGFTFDEEVNEDDTVMNKNG 75

Query: 69  IQLLIDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNAVTTCGCGSSFS 115
           +QLLIDS+SYQYL+G+EIDYKDDL+G++FVIKNPNA TTCGCGSSFS
Sbjct: 76  VQLLIDSMSYQYLVGAEIDYKDDLNGAQFVIKNPNATTTCGCGSSFS 122

Required for insertion of 4Fe-4S clusters.

Burkholderia cenocepacia (strain HI2424) (taxid: 331272)

>sp|B1JVU6|ERPA_BURCC Putative iron--sulfur cluster insertion protein ErpA OS=Burkholderia cenocepacia (strain MC0-3) GN=erpA PE=3 SV=1

 Score =  166 bits (421), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 74/107 (69%), Positives = 89/107 (83%)

Query: 9   ISITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNG 68
           +    T+ A  KV  LI ++GN +LKLRVF+QGGGCSGFQYGF FDE  N+DD +  KNG
Sbjct: 16  LPFVFTDAAADKVKQLIDEEGNPDLKLRVFVQGGGCSGFQYGFTFDEEVNEDDTVMNKNG 75

Query: 69  IQLLIDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNAVTTCGCGSSFS 115
           +QLLIDS+SYQYL+G+EIDYKDDL+G++FVIKNPNA TTCGCGSSFS
Sbjct: 76  VQLLIDSMSYQYLVGAEIDYKDDLNGAQFVIKNPNATTTCGCGSSFS 122

Required for insertion of 4Fe-4S clusters.

Burkholderia cenocepacia (strain MC0-3) (taxid: 406425)

>sp|Q1BZ43|ERPA_BURCA Putative iron-sulfur cluster insertion protein ErpA OS=Burkholderia cenocepacia (strain AU 1054) GN=erpA PE=3 SV=1

 Score =  166 bits (421), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 74/107 (69%), Positives = 89/107 (83%)

Query: 9   ISITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNG 68
           +    T+ A  KV  LI ++GN +LKLRVF+QGGGCSGFQYGF FDE  N+DD +  KNG
Sbjct: 16  LPFVFTDAAADKVKQLIDEEGNPDLKLRVFVQGGGCSGFQYGFTFDEEVNEDDTVMNKNG 75

Query: 69  IQLLIDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNAVTTCGCGSSFS 115
           +QLLIDS+SYQYL+G+EIDYKDDL+G++FVIKNPNA TTCGCGSSFS
Sbjct: 76  VQLLIDSMSYQYLVGAEIDYKDDLNGAQFVIKNPNATTTCGCGSSFS 122

Required for insertion of 4Fe-4S clusters.

Burkholderia cenocepacia (strain AU 1054) (taxid: 331271)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
115350629	123	iron-sulfur cluster insertion protein Er	0.906	0.869	0.691	3e-40
134294759	123	iron-sulfur cluster insertion protein Er	0.906	0.869	0.691	3e-40
167586141	122	iron-sulfur cluster assembly accessory p	0.872	0.844	0.718	3e-40
427402510	122	iron-sulfur cluster assembly accessory p	0.915	0.885	0.685	3e-40
340789144	120	putative iron binding protein from the H	0.906	0.891	0.700	3e-40
78065243	123	iron-sulfur cluster insertion protein Er	0.906	0.869	0.691	4e-40
329909870	116	putative iron binding protein from the H	0.983	1.0	0.655	4e-40
171319632	123	iron-sulfur cluster assembly accessory p	0.906	0.869	0.691	5e-40
254253231	123	HesB/YadR/YfhF family protein [Burkholde	0.872	0.837	0.718	5e-40
161525871	123	iron-sulfur cluster insertion protein Er	0.872	0.837	0.718	5e-40

>gi|115350629|ref|YP_772468.1| iron-sulfur cluster insertion protein ErpA [Burkholderia ambifaria AMMD] gi|170699599|ref|ZP_02890638.1| iron-sulfur cluster assembly accessory protein [Burkholderia ambifaria IOP40-10] gi|172059662|ref|YP_001807314.1| iron-sulfur cluster insertion protein ErpA [Burkholderia ambifaria MC40-6] gi|122324011|sp|Q0BI89.1|ERPA_BURCM RecName: Full=Putative iron-sulfur cluster insertion protein ErpA gi|226694526|sp|B1YTD3.1|ERPA_BURA4 RecName: Full=Putative iron--sulfur cluster insertion protein ErpA gi|115280617|gb|ABI86134.1| iron-sulfur cluster assembly accessory protein [Burkholderia ambifaria AMMD] gi|170135481|gb|EDT03770.1| iron-sulfur cluster assembly accessory protein [Burkholderia ambifaria IOP40-10] gi|171992179|gb|ACB63098.1| iron-sulfur cluster assembly accessory protein [Burkholderia ambifaria MC40-6]

 Score =  169 bits (427), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 74/107 (69%), Positives = 89/107 (83%)

Query: 9   ISITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNG 68
           +    T+ A  KV  LI ++GN +LKLRVF+QGGGCSGFQYGF FDE  N+DD +  KNG
Sbjct: 16  VPFVFTDAAADKVKQLIDEEGNPDLKLRVFVQGGGCSGFQYGFTFDEEVNEDDTVMNKNG 75

Query: 69  IQLLIDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNAVTTCGCGSSFS 115
           +QLLIDS+SYQYL+G+EIDYKDDL+G++FVIKNPNA TTCGCGSSFS
Sbjct: 76  VQLLIDSMSYQYLVGAEIDYKDDLNGAQFVIKNPNATTTCGCGSSFS 122

Source: Burkholderia ambifaria AMMD

Species: Burkholderia ambifaria

Genus: Burkholderia

Family: Burkholderiaceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|134294759|ref|YP_001118494.1| iron-sulfur cluster insertion protein ErpA [Burkholderia vietnamiensis G4] gi|387901350|ref|YP_006331689.1| iron binding protein from the HesB_IscA_SufA family [Burkholderia sp. KJ006] gi|160380658|sp|A4JBK6.1|ERPA1_BURVG RecName: Full=Putative iron-sulfur cluster insertion protein ErpA 1 gi|134137916|gb|ABO53659.1| iron-sulfur cluster assembly accessory protein [Burkholderia vietnamiensis G4] gi|387576242|gb|AFJ84958.1| Putative iron binding protein from the HesB_IscA_SufA family [Burkholderia sp. KJ006]

 Score =  168 bits (426), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 74/107 (69%), Positives = 89/107 (83%)

Query: 9   ISITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNG 68
           +    T+ A  KV  LI ++GN +LKLRVF+QGGGCSGFQYGF FDE  N+DD +  KNG
Sbjct: 16  VPFVFTDAAADKVKQLIDEEGNPDLKLRVFVQGGGCSGFQYGFTFDEEVNEDDTVMDKNG 75

Query: 69  IQLLIDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNAVTTCGCGSSFS 115
           +QLLIDS+SYQYL+G+EIDYKDDL+G++FVIKNPNA TTCGCGSSFS
Sbjct: 76  VQLLIDSMSYQYLVGAEIDYKDDLNGAQFVIKNPNATTTCGCGSSFS 122

Source: Burkholderia vietnamiensis G4

Species: Burkholderia vietnamiensis

Genus: Burkholderia

Family: Burkholderiaceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|167586141|ref|ZP_02378529.1| iron-sulfur cluster assembly accessory protein [Burkholderia ubonensis Bu]

 Score =  168 bits (426), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 74/103 (71%), Positives = 89/103 (86%)

Query: 13  LTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGIQLL 72
            T+ A +KV  LI ++GN +LKLRVF+QGGGCSGFQYGF FDE  N+DD +  KNG+QLL
Sbjct: 19  FTDAAAEKVKQLIDEEGNPDLKLRVFVQGGGCSGFQYGFTFDEEVNEDDTVMNKNGVQLL 78

Query: 73  IDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNAVTTCGCGSSFS 115
           IDS+SYQYL+G+EIDYKDDL+G++FVIKNPNA TTCGCGSSFS
Sbjct: 79  IDSMSYQYLVGAEIDYKDDLNGAQFVIKNPNATTTCGCGSSFS 121

Source: Burkholderia ubonensis Bu

Species: Burkholderia ubonensis

Genus: Burkholderia

Family: Burkholderiaceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|427402510|ref|ZP_18893507.1| iron-sulfur cluster assembly accessory protein [Massilia timonae CCUG 45783] gi|425718316|gb|EKU81263.1| iron-sulfur cluster assembly accessory protein [Massilia timonae CCUG 45783]

 Score =  168 bits (426), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 74/108 (68%), Positives = 93/108 (86%)

Query: 9   ISITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNG 68
           + I  T+ A +KV+ LI+++GN +LKLRVF+QGGGCSGFQYGF FDE  N+DD   +KNG
Sbjct: 15  VPINFTDSAAQKVAQLIEEEGNPDLKLRVFVQGGGCSGFQYGFTFDEIVNEDDTTMEKNG 74

Query: 69  IQLLIDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNAVTTCGCGSSFST 116
           +QLLIDS+SYQYL+G+EIDYKDDL+G++FVIKNPNA +TCGCGSSFS 
Sbjct: 75  VQLLIDSMSYQYLVGAEIDYKDDLEGAQFVIKNPNATSTCGCGSSFSA 122

Source: Massilia timonae CCUG 45783

Species: Massilia timonae

Genus: Massilia

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|340789144|ref|YP_004754609.1| putative iron binding protein from the HesB_IscA_SufA family [Collimonas fungivorans Ter331] gi|340554411|gb|AEK63786.1| putative iron binding protein from the HesB_IscA_SufA family [Collimonas fungivorans Ter331]

 Score =  168 bits (426), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 75/107 (70%), Positives = 90/107 (84%)

Query: 10  SITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGI 69
            I  T+ A  KV+ LI+++GN +LKLRVF+QGGGCSGFQYGF FDE  N+DD    KNG+
Sbjct: 14  PIVFTDSAAAKVAQLIEEEGNPDLKLRVFVQGGGCSGFQYGFTFDEIVNEDDTTMSKNGV 73

Query: 70  QLLIDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNAVTTCGCGSSFST 116
           QLLIDS+SYQYL+G+EIDYKDDL+G++FVIKNPNA TTCGCGSSFS 
Sbjct: 74  QLLIDSMSYQYLVGAEIDYKDDLEGAQFVIKNPNATTTCGCGSSFSA 120

Source: Collimonas fungivorans Ter331

Species: Collimonas fungivorans

Genus: Collimonas

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|78065243|ref|YP_368012.1| iron-sulfur cluster insertion protein ErpA [Burkholderia sp. 383] gi|123569308|sp|Q39JJ8.1|ERPA_BURS3 RecName: Full=Putative iron-sulfur cluster insertion protein ErpA gi|77965988|gb|ABB07368.1| HesB/YadR/YfhF family protein [Burkholderia sp. 383]

 Score =  168 bits (425), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 74/107 (69%), Positives = 89/107 (83%)

Query: 9   ISITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNG 68
           +    T+ A  KV  LI ++GN +LKLRVF+QGGGCSGFQYGF FDE  N+DD +  KNG
Sbjct: 16  VPFVFTDAAADKVKQLIDEEGNPDLKLRVFVQGGGCSGFQYGFTFDEEVNEDDTVMNKNG 75

Query: 69  IQLLIDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNAVTTCGCGSSFS 115
           +QLLIDS+SYQYL+G+EIDYKDDL+G++FVIKNPNA TTCGCGSSFS
Sbjct: 76  VQLLIDSMSYQYLVGAEIDYKDDLNGAQFVIKNPNASTTCGCGSSFS 122

Source: Burkholderia sp. 383

Species: Burkholderia sp. 383

Genus: Burkholderia

Family: Burkholderiaceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|329909870|ref|ZP_08275141.1| putative iron binding protein from the HesB IscA SufA family [Oxalobacteraceae bacterium IMCC9480] gi|327546388|gb|EGF31400.1| putative iron binding protein from the HesB IscA SufA family [Oxalobacteraceae bacterium IMCC9480]

 Score =  168 bits (425), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 76/116 (65%), Positives = 93/116 (80%)

Query: 1   MNENVKNNISITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKD 60
           MN   +    I  ++ A  KV+ LI+++GN +LKLRVF+QGGGCSGFQYGF FDE  N+D
Sbjct: 1   MNAVTEMPAPILFSDSAAMKVAQLIEEEGNPDLKLRVFVQGGGCSGFQYGFTFDEIANED 60

Query: 61  DIIFKKNGIQLLIDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNAVTTCGCGSSFST 116
           D    KNG+QLLIDS+SYQYL+G+EIDYKDDL+G++FVIKNPNA TTCGCGSSFS 
Sbjct: 61  DTTMTKNGVQLLIDSMSYQYLVGAEIDYKDDLEGAQFVIKNPNATTTCGCGSSFSA 116

Source: Oxalobacteraceae bacterium IMCC9480

Species: Oxalobacteraceae bacterium IMCC9480

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|171319632|ref|ZP_02908726.1| iron-sulfur cluster assembly accessory protein [Burkholderia ambifaria MEX-5] gi|402567589|ref|YP_006616934.1| iron-sulfur cluster assembly accessory protein [Burkholderia cepacia GG4] gi|171095123|gb|EDT40129.1| iron-sulfur cluster assembly accessory protein [Burkholderia ambifaria MEX-5] gi|402248786|gb|AFQ49240.1| iron-sulfur cluster assembly accessory protein [Burkholderia cepacia GG4]

 Score =  168 bits (425), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 74/107 (69%), Positives = 89/107 (83%)

Query: 9   ISITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNG 68
           +    T+ A  KV  LI ++GN +LKLRVF+QGGGCSGFQYGF FDE  N+DD +  KNG
Sbjct: 16  LPFVFTDAAADKVKQLIDEEGNPDLKLRVFVQGGGCSGFQYGFTFDEEVNEDDTVMNKNG 75

Query: 69  IQLLIDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNAVTTCGCGSSFS 115
           +QLLIDS+SYQYL+G+EIDYKDDL+G++FVIKNPNA TTCGCGSSFS
Sbjct: 76  VQLLIDSMSYQYLVGAEIDYKDDLNGAQFVIKNPNATTTCGCGSSFS 122

Source: Burkholderia ambifaria MEX-5

Species: Burkholderia ambifaria

Genus: Burkholderia

Family: Burkholderiaceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|254253231|ref|ZP_04946549.1| HesB/YadR/YfhF family protein [Burkholderia dolosa AUO158] gi|124895840|gb|EAY69720.1| HesB/YadR/YfhF family protein [Burkholderia dolosa AUO158]

 Score =  168 bits (425), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 74/103 (71%), Positives = 88/103 (85%)

Query: 13  LTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGIQLL 72
            T+ A  KV  LI ++GN +LKLRVF+QGGGCSGFQYGF FDE  N+DD +  KNG+QLL
Sbjct: 20  FTDAAADKVKQLIDEEGNPDLKLRVFVQGGGCSGFQYGFTFDEEVNEDDTVMNKNGVQLL 79

Query: 73  IDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNAVTTCGCGSSFS 115
           IDS+SYQYL+G+EIDYKDDL+G++FVIKNPNA TTCGCGSSFS
Sbjct: 80  IDSMSYQYLVGAEIDYKDDLNGAQFVIKNPNATTTCGCGSSFS 122

Source: Burkholderia dolosa AUO158

Species: Burkholderia dolosa

Genus: Burkholderia

Family: Burkholderiaceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|161525871|ref|YP_001580883.1| iron-sulfur cluster insertion protein ErpA [Burkholderia multivorans ATCC 17616] gi|189349408|ref|YP_001945036.1| iron-sulfur cluster insertion protein ErpA [Burkholderia multivorans ATCC 17616] gi|221202303|ref|ZP_03575337.1| iron-sulfur cluster assembly accessory protein [Burkholderia multivorans CGD2M] gi|221209117|ref|ZP_03582111.1| iron-sulfur cluster assembly accessory protein [Burkholderia multivorans CGD2] gi|221214509|ref|ZP_03587480.1| iron-sulfur cluster assembly accessory protein [Burkholderia multivorans CGD1] gi|416908546|ref|ZP_11931194.1| iron-sulfur cluster insertion protein ErpA [Burkholderia sp. TJI49] gi|421472567|ref|ZP_15920752.1| iron-sulfur cluster assembly accessory protein [Burkholderia multivorans ATCC BAA-247] gi|421477685|ref|ZP_15925492.1| iron-sulfur cluster assembly accessory protein [Burkholderia multivorans CF2] gi|226694529|sp|A9AH79.1|ERPA_BURM1 RecName: Full=Putative iron--sulfur cluster insertion protein ErpA gi|160343300|gb|ABX16386.1| iron-sulfur cluster assembly accessory protein [Burkholderia multivorans ATCC 17616] gi|189333430|dbj|BAG42500.1| HesB-like protein [Burkholderia multivorans ATCC 17616] gi|221165766|gb|EED98241.1| iron-sulfur cluster assembly accessory protein [Burkholderia multivorans CGD1] gi|221171021|gb|EEE03474.1| iron-sulfur cluster assembly accessory protein [Burkholderia multivorans CGD2] gi|221177877|gb|EEE10290.1| iron-sulfur cluster assembly accessory protein [Burkholderia multivorans CGD2M] gi|325528767|gb|EGD05828.1| iron-sulfur cluster insertion protein ErpA [Burkholderia sp. TJI49] gi|400222813|gb|EJO53168.1| iron-sulfur cluster assembly accessory protein [Burkholderia multivorans ATCC BAA-247] gi|400226069|gb|EJO56173.1| iron-sulfur cluster assembly accessory protein [Burkholderia multivorans CF2]

 Score =  167 bits (424), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 74/103 (71%), Positives = 88/103 (85%)

Query: 13  LTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGIQLL 72
            T+ A  KV  LI ++GN +LKLRVF+QGGGCSGFQYGF FDE  N+DD +  KNG+QLL
Sbjct: 20  FTDAAADKVKQLIDEEGNPDLKLRVFVQGGGCSGFQYGFTFDEEVNEDDTVMNKNGVQLL 79

Query: 73  IDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNAVTTCGCGSSFS 115
           IDS+SYQYL+G+EIDYKDDL+G++FVIKNPNA TTCGCGSSFS
Sbjct: 80  IDSMSYQYLVGAEIDYKDDLNGAQFVIKNPNATTTCGCGSSFS 122

Source: Burkholderia multivorans ATCC 17616

Species: Burkholderia multivorans

Genus: Burkholderia

Family: Burkholderiaceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
UNIPROTKB|Q60AU6	130	erpA2 "Iron-sulfur cluster ins	0.898	0.815	0.537	1.9e-28
UNIPROTKB|Q8EHC4	116	erpA "Iron-sulfur cluster inse	0.974	0.991	0.478	2.2e-27
TIGR_CMR|SO_1304	116	SO_1304 "HesB/YadR/YfhF family	0.974	0.991	0.478	2.2e-27
UNIPROTKB|Q889Z2	116	erpA "Iron-sulfur cluster inse	0.677	0.689	0.65	4.5e-27
UNIPROTKB|Q47VA3	113	erpA "Iron-sulfur cluster inse	0.906	0.946	0.495	4e-26
TIGR_CMR|CPS_4622	113	CPS_4622 "HesB/YadR/YfhF famil	0.906	0.946	0.495	4e-26
UNIPROTKB|P0ACC3	114	erpA "essential respiratory pr	0.957	0.991	0.452	1.1e-25
UNIPROTKB|Q60C62	128	erpA1 "Iron-sulfur cluster ins	0.898	0.828	0.509	1.8e-25
UNIPROTKB|Q9KU96	113	erpA "Iron-sulfur cluster inse	0.915	0.955	0.472	2.2e-25
TIGR_CMR|VC_0627	113	VC_0627 "HesB/YadR/YfhF family	0.915	0.955	0.472	2.2e-25

UNIPROTKB|Q60AU6 erpA2 "Iron-sulfur cluster insertion protein ErpA 2" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 57/106 (53%), Positives = 76/106 (71%)

Query:    10 SITLTEVAIKKVSHXXXXXXXXXXXXRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGI 69
             +I  T+ A ++VS             RV++ GGGCSGFQYGF FDE  N+DD + +KNG+
Sbjct:    24 TIKFTDSAAQRVSELLAEEGDQNLKLRVYVTGGGCSGFQYGFTFDEVVNEDDTVVEKNGV 83

Query:    70 QLLIDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNAVTTCGCGSSFS 115
              +L+D +S QYL G+EIDY +++ GS+FVI+NPNA TTCGCGSSFS
Sbjct:    84 SVLVDPMSLQYLQGAEIDYTENVSGSQFVIRNPNATTTCGCGSSFS 129

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8EHC4 erpA "Iron-sulfur cluster insertion protein ErpA" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 55/115 (47%), Positives = 72/115 (62%)

Query:     1 MNENVKNNISITLTEVAIKKVSHXXXXXXXXXXXXRVFIQGGGCSGFQYGFMFDEHTNKD 60
             M +     + I  T+ A  KV              RV++ GGGCSGFQYGF FDE  N+ 
Sbjct:     1 MTDQADATMPIKFTDAAAAKVKGLLEEEQNPALKLRVYVTGGGCSGFQYGFTFDEKVNEG 60

Query:    61 DIIFKKNGIQLLIDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNAVTTCGCGSSFS 115
             D   +K G+QL++D +S QYL+G E+DY   L+GS+F +KNPNA TTCGCG+SFS
Sbjct:    61 DFTVEKQGVQLVVDPMSLQYLVGGEVDYTSGLEGSRFFVKNPNATTTCGCGASFS 115

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_1304 SO_1304 "HesB/YadR/YfhF family protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 55/115 (47%), Positives = 72/115 (62%)

Query:     1 MNENVKNNISITLTEVAIKKVSHXXXXXXXXXXXXRVFIQGGGCSGFQYGFMFDEHTNKD 60
             M +     + I  T+ A  KV              RV++ GGGCSGFQYGF FDE  N+ 
Sbjct:     1 MTDQADATMPIKFTDAAAAKVKGLLEEEQNPALKLRVYVTGGGCSGFQYGFTFDEKVNEG 60

Query:    61 DIIFKKNGIQLLIDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNAVTTCGCGSSFS 115
             D   +K G+QL++D +S QYL+G E+DY   L+GS+F +KNPNA TTCGCG+SFS
Sbjct:    61 DFTVEKQGVQLVVDPMSLQYLVGGEVDYTSGLEGSRFFVKNPNATTTCGCGASFS 115

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q889Z2 erpA "Iron-sulfur cluster insertion protein ErpA" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 52/80 (65%), Positives = 66/80 (82%)

Query:    36 RVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGIQLLIDSVSYQYLIGSEIDYKDDLDGS 95
             RVF+ GGGCSGFQYGF FDE    DD I ++ G+ L++D +S+QYL G+E+DY++ L+GS
Sbjct:    36 RVFVTGGGCSGFQYGFTFDEDVADDDTIVEREGVSLVVDPMSFQYLAGAEVDYQEGLEGS 95

Query:    96 KFVIKNPNAVTTCGCGSSFS 115
             +FVIKNPNA TTCGCGSSFS
Sbjct:    96 RFVIKNPNASTTCGCGSSFS 115

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q47VA3 erpA "Iron-sulfur cluster insertion protein ErpA" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 53/107 (49%), Positives = 69/107 (64%)

Query:     9 ISITLTEVAIKKVSHXXXXXXXXXXXXRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNG 68
             + I  T+ A  KV              RV++ GGGCSGFQYGF FDE  N  D+  +K G
Sbjct:     6 LPIKFTDSAASKVLSLITEEENPALKLRVYVTGGGCSGFQYGFTFDEKVNDGDMTIEKQG 65

Query:    69 IQLLIDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNAVTTCGCGSSFS 115
             + ++ID +S QYL+  E+DY + L+GS+FV+ NPNA TTCGCGSSFS
Sbjct:    66 VMMVIDPMSLQYLVDGEVDYLESLEGSRFVVNNPNATTTCGCGSSFS 112

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CPS_4622 CPS_4622 "HesB/YadR/YfhF family protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 53/107 (49%), Positives = 69/107 (64%)

Query:     9 ISITLTEVAIKKVSHXXXXXXXXXXXXRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNG 68
             + I  T+ A  KV              RV++ GGGCSGFQYGF FDE  N  D+  +K G
Sbjct:     6 LPIKFTDSAASKVLSLITEEENPALKLRVYVTGGGCSGFQYGFTFDEKVNDGDMTIEKQG 65

Query:    69 IQLLIDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNAVTTCGCGSSFS 115
             + ++ID +S QYL+  E+DY + L+GS+FV+ NPNA TTCGCGSSFS
Sbjct:    66 VMMVIDPMSLQYLVDGEVDYLESLEGSRFVVNNPNATTTCGCGSSFS 112

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|P0ACC3 erpA "essential respiratory protein A" [Escherichia coli K-12 (taxid:83333)]

 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 52/115 (45%), Positives = 75/115 (65%)

Query:     1 MNENVKNNISITLTEVAIKKVSHXXXXXXXXXXXXRVFIQGGGCSGFQYGFMFDEHTNKD 60
             M+++V   + +  T+ A  KV              RV+I GGGCSGFQYGF FD+  N+ 
Sbjct:     1 MSDDVA--LPLEFTDAAANKVKSLIADEDNPNLKLRVYITGGGCSGFQYGFTFDDQVNEG 58

Query:    61 DIIFKKNGIQLLIDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNAVTTCGCGSSFS 115
             D+  +K G+ L++D +S QYL+G  +DY + L+GS+F++ NPNA +TCGCGSSFS
Sbjct:    59 DMTIEKQGVGLVVDPMSLQYLVGGSVDYTEGLEGSRFIVTNPNAKSTCGCGSSFS 113

GO:0005198 "structural molecule activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0009060 "aerobic respiration" evidence=IMP

GO:0009061 "anaerobic respiration" evidence=IMP

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA;IDA

GO:0051604 "protein maturation" evidence=IDA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IDA

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IDA

UNIPROTKB|Q60C62 erpA1 "Iron-sulfur cluster insertion protein ErpA 1" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 54/106 (50%), Positives = 71/106 (66%)

Query:    10 SITLTEVAIKKVSHXXXXXXXXXXXXRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGI 69
             ++  T  A  KVS             RV++ GGGCSG QYGF F+E  N+DD   +K+G+
Sbjct:    13 ALIFTGNAAAKVSELIAEEGNPALKLRVYVSGGGCSGMQYGFAFEEAVNEDDTTVEKDGV 72

Query:    70 QLLIDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNAVTTCGCGSSFS 115
              LL+D  S QYL G+EIDY++ L+GS+FVIKNPNA ++C CGSSFS
Sbjct:    73 VLLVDPTSLQYLQGAEIDYQEGLEGSRFVIKNPNATSSCSCGSSFS 118

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q9KU96 erpA "Iron-sulfur cluster insertion protein ErpA" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 51/108 (47%), Positives = 71/108 (65%)

Query:     8 NISITLTEVAIKKVSHXXXXXXXXXXXXRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKN 67
             N+ ++ ++ A K+V              RV+I GGGCSGFQYGF FDE  N+ D   + +
Sbjct:     5 NVPLSFSDAAAKRVKALIAEEENPSLMLRVYITGGGCSGFQYGFTFDETVNEGDTKIENS 64

Query:    68 GIQLLIDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNAVTTCGCGSSFS 115
             G+ L++D +S QYLIG  +DY + L+GS+F + NPNA TTCGCG+SFS
Sbjct:    65 GVILVVDPMSLQYLIGGVVDYTEGLEGSRFFVNNPNATTTCGCGASFS 112

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|VC_0627 VC_0627 "HesB/YadR/YfhF family protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 51/108 (47%), Positives = 71/108 (65%)

Query:     8 NISITLTEVAIKKVSHXXXXXXXXXXXXRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKN 67
             N+ ++ ++ A K+V              RV+I GGGCSGFQYGF FDE  N+ D   + +
Sbjct:     5 NVPLSFSDAAAKRVKALIAEEENPSLMLRVYITGGGCSGFQYGFTFDETVNEGDTKIENS 64

Query:    68 GIQLLIDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNAVTTCGCGSSFS 115
             G+ L++D +S QYLIG  +DY + L+GS+F + NPNA TTCGCG+SFS
Sbjct:    65 GVILVVDPMSLQYLIGGVVDYTEGLEGSRFFVNNPNATTTCGCGASFS 112

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q62HB8	ERPA_BURMA	No assigned EC number	0.6893	0.8728	0.8442	yes	N/A
Q7NRT6	ERPA_CHRVO	No assigned EC number	0.6226	0.8983	0.9059	yes	N/A
Q0KED6	ERPA_CUPNH	No assigned EC number	0.6893	0.8728	0.8442	yes	N/A
A4G1T7	ERPA_HERAR	No assigned EC number	0.6465	0.9830	1.0	yes	N/A
B4EET4	ERPA_BURCJ	No assigned EC number	0.6915	0.9067	0.8699	yes	N/A
Q3JNR3	ERPA_BURP1	No assigned EC number	0.6893	0.8728	0.8442	yes	N/A
A0K4K7	ERPA_BURCH	No assigned EC number	0.6915	0.9067	0.8699	yes	N/A
A9AH79	ERPA_BURM1	No assigned EC number	0.7184	0.8728	0.8373	yes	N/A
Q3SF18	ERPA_THIDA	No assigned EC number	0.5948	0.9830	1.0	yes	N/A
A3NZ78	ERPA_BURP0	No assigned EC number	0.6893	0.8728	0.8442	yes	N/A
Q8Y242	ERPA_RALSO	No assigned EC number	0.6792	0.8983	0.8548	yes	N/A
Q1LRC6	ERPA_RALME	No assigned EC number	0.6893	0.8728	0.8442	yes	N/A
Q13UB4	ERPA1_BURXL	No assigned EC number	0.6990	0.8728	0.8512	yes	N/A
B2UFK5	ERPA_RALPJ	No assigned EC number	0.6792	0.8983	0.8548	yes	N/A
Q2SZ67	ERPA_BURTA	No assigned EC number	0.6893	0.8728	0.8442	yes	N/A
Q2KV08	ERPA_BORA1	No assigned EC number	0.6261	0.9067	0.8699	yes	N/A
A1W3Q0	ERPA_ACISJ	No assigned EC number	0.6403	0.9661	0.9193	yes	N/A
A2SKL7	ERPA_METPP	No assigned EC number	0.6635	0.9067	0.8842	yes	N/A
B2AH60	ERPA_CUPTR	No assigned EC number	0.6893	0.8728	0.8442	yes	N/A
A4T031	ERPA_POLSQ	No assigned EC number	0.6339	0.9491	0.9032	yes	N/A
B1JVU6	ERPA_BURCC	No assigned EC number	0.6915	0.9067	0.8699	yes	N/A
B2JGV0	ERPA_BURP8	No assigned EC number	0.6990	0.8728	0.8512	yes	N/A
A2S583	ERPA_BURM9	No assigned EC number	0.6893	0.8728	0.8442	yes	N/A
A4JBK6	ERPA1_BURVG	No assigned EC number	0.6915	0.9067	0.8699	yes	N/A
Q39JJ8	ERPA_BURS3	No assigned EC number	0.6915	0.9067	0.8699	yes	N/A
Q7W3Z5	ERPA_BORPA	No assigned EC number	0.6261	0.9067	0.8699	yes	N/A
A1TUF2	ERPA_ACIAC	No assigned EC number	0.6521	0.9576	0.9338	yes	N/A
A1K969	ERPA_AZOSB	No assigned EC number	0.6120	0.9830	1.0	yes	N/A
Q124P0	ERPA_POLSJ	No assigned EC number	0.6923	0.8813	0.8595	yes	N/A
Q220S8	ERPA_RHOFD	No assigned EC number	0.6886	0.8983	0.8833	yes	N/A
Q5NGX6	ERPA_FRATT	No assigned EC number	0.5739	0.9745	0.9913	yes	N/A
A9C177	ERPA_DELAS	No assigned EC number	0.6990	0.8728	0.8306	yes	N/A
Q1BZ43	ERPA_BURCA	No assigned EC number	0.6915	0.9067	0.8699	yes	N/A
B1YTD3	ERPA_BURA4	No assigned EC number	0.6915	0.9067	0.8699	yes	N/A
A1V053	ERPA_BURMS	No assigned EC number	0.6893	0.8728	0.8442	yes	N/A
Q63QW5	ERPA_BURPS	No assigned EC number	0.6893	0.8728	0.8442	yes	N/A
Q47IC1	ERPA_DECAR	No assigned EC number	0.5948	0.9830	1.0	yes	N/A
A3MP61	ERPA_BURM7	No assigned EC number	0.6893	0.8728	0.8442	yes	N/A
A4IZA5	ERPA_FRATW	No assigned EC number	0.5739	0.9745	0.9913	yes	N/A
Q7WFC7	ERPA_BORBR	No assigned EC number	0.6261	0.9067	0.8699	yes	N/A
Q5P7U0	ERPA_AROAE	No assigned EC number	0.6034	0.9830	1.0	yes	N/A
Q7VUW2	ERPA_BORPE	No assigned EC number	0.6261	0.9067	0.8699	yes	N/A
A3NDG6	ERPA_BURP6	No assigned EC number	0.6893	0.8728	0.8442	yes	N/A
A6SUP2	ERPA_JANMA	No assigned EC number	0.6551	0.9830	1.0	yes	N/A
A1WL78	ERPA_VEREI	No assigned EC number	0.6465	0.9661	0.9421	yes	N/A
Q475T0	ERPA_CUPPJ	No assigned EC number	0.6893	0.8728	0.8442	yes	N/A
A9I246	ERPA_BORPD	No assigned EC number	0.6415	0.8983	0.8688	yes	N/A
Q0BKU2	ERPA_FRATO	No assigned EC number	0.5739	0.9745	0.9913	yes	N/A
B2SYK8	ERPA_BURPP	No assigned EC number	0.6990	0.8728	0.8512	yes	N/A
Q0BI89	ERPA_BURCM	No assigned EC number	0.6915	0.9067	0.8699	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	118
PRK13623	115	PRK13623, PRK13623, iron-sulfur cluster insertion	6e-65
COG0316	110	COG0316, sufA, Fe-S cluster assembly scaffold prot	7e-51
TIGR00049	105	TIGR00049, TIGR00049, Iron-sulfur cluster assembly	1e-48
pfam01521	91	pfam01521, Fe-S_biosyn, Iron-sulphur cluster biosy	9e-33
PLN03082	163	PLN03082, PLN03082, Iron-sulfur cluster assembly;	6e-29
TIGR01997	107	TIGR01997, sufA_proteo, FeS assembly scaffold SufA	1e-20
TIGR02011	105	TIGR02011, IscA, iron-sulfur cluster assembly prot	2e-20
PRK09502	107	PRK09502, iscA, iron-sulfur cluster assembly prote	1e-19
PRK09504	122	PRK09504, sufA, iron-sulfur cluster assembly scaff	2e-13
TIGR03341	190	TIGR03341, YhgI_GntY, IscR-regulated protein YhgI	4e-06
PRK11190	192	PRK11190, PRK11190, Fe/S biogenesis protein NfuA;	1e-04

>gnl|CDD|184186 PRK13623, PRK13623, iron-sulfur cluster insertion protein ErpA; Provisional

 Score =  192 bits (489), Expect = 6e-65
 Identities = 64/114 (56%), Positives = 85/114 (74%)

Query: 2   NENVKNNISITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDD 61
             +    + +  T+ A  KV  LI+++GN +LKLRV+I GGGCSGFQYGF FDE  N+DD
Sbjct: 1   MMSDDVPLPLVFTDAAAAKVKELIEEEGNPDLKLRVYITGGGCSGFQYGFTFDEQVNEDD 60

Query: 62  IIFKKNGIQLLIDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNAVTTCGCGSSFS 115
              +K G+ L++D +S QYL+G+E+DY + L+GS+FVIKNPNA TTCGCGSSFS
Sbjct: 61  TTIEKQGVTLVVDPMSLQYLVGAEVDYTEGLEGSRFVIKNPNAKTTCGCGSSFS 114

Length = 115

>gnl|CDD|223393 COG0316, sufA, Fe-S cluster assembly scaffold protein [Posttranslational modification, protein turnover, chaperones]

 Score =  156 bits (396), Expect = 7e-51
 Identities = 57/106 (53%), Positives = 78/106 (73%)

Query: 11  ITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGIQ 70
           ITLT+ A  +V  L+ K+G  NL LRV ++GGGCSGFQYG  FD+  N+DD +F+++G++
Sbjct: 5   ITLTDAAAARVKALLAKEGEENLGLRVGVKGGGCSGFQYGLEFDDEINEDDTVFEQDGVK 64

Query: 71  LLIDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNAVTTCGCGSSFST 116
           +++D  S  YL G+EIDY +DL GS F  KNPNA ++CGCG SFS 
Sbjct: 65  VVVDPKSLPYLEGTEIDYVEDLLGSGFTFKNPNAKSSCGCGESFSV 110

Length = 110

>gnl|CDD|232799 TIGR00049, TIGR00049, Iron-sulfur cluster assembly accessory protein

 Score =  150 bits (381), Expect = 1e-48
 Identities = 54/105 (51%), Positives = 74/105 (70%)

Query: 12  TLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGIQL 71
           TLT+ A K++  L+  +G  NL LRV ++GGGCSG QYG  FD+  N+DD +F+++G+++
Sbjct: 1   TLTDSAAKRIKALLAGEGEPNLGLRVGVKGGGCSGLQYGLEFDDEPNEDDEVFEQDGVKV 60

Query: 72  LIDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNAVTTCGCGSSFST 116
           ++D  S  YL GSEIDY ++L GS F   NPNA  TCGCG SFS 
Sbjct: 61  VVDPKSLPYLDGSEIDYVEELLGSGFTFTNPNAKGTCGCGKSFSV 105

Proteins in this subfamily appear to be associated with the process of FeS-cluster assembly. The HesB proteins are associated with the nif gene cluster and the Rhizobium gene IscN has been shown to be required for nitrogen fixation. Nitrogenase includes multiple FeS clusters and many genes for their assembly. The E. coli SufA protein is associated with SufS, a NifS homolog and SufD which are involved in the FeS cluster assembly of the FhnF protein. The Azotobacter protein IscA (homologs of which are also found in E.coli) is associated which IscS, another NifS homolog and IscU, a nifU homolog as well as other factors consistent with a role in FeS cluster chemistry. A homolog from Geobacter contains a selenocysteine in place of an otherwise invariant cysteine, further suggesting a role in redox chemistry [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 105

>gnl|CDD|110518 pfam01521, Fe-S_biosyn, Iron-sulphur cluster biosynthesis

 Score =  109 bits (275), Expect = 9e-33
 Identities = 36/92 (39%), Positives = 59/92 (64%), Gaps = 1/92 (1%)

Query: 11  ITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGIQ 70
           ITLT+ A K +  L+  +G     LR+ ++ GGCSGF YG  F++  ++ D +F+++G+ 
Sbjct: 1   ITLTDAAAKHIKKLLDLEGG-ENGLRIGVRYGGCSGFSYGLTFEDEPDEGDEVFEQDGVT 59

Query: 71  LLIDSVSYQYLIGSEIDYKDDLDGSKFVIKNP 102
           +++D  S  YL G+EID+ ++L GS F   NP
Sbjct: 60  VVVDEKSLPYLEGTEIDFVEELLGSGFTFSNP 91

This family is involved in iron-sulphur cluster biosynthesis. Its members include proteins that are involved in nitrogen fixation such as the HesB and HesB-like proteins. Length = 91

>gnl|CDD|215564 PLN03082, PLN03082, Iron-sulfur cluster assembly; Provisional

 Score =  102 bits (255), Expect = 6e-29
 Identities = 43/107 (40%), Positives = 73/107 (68%), Gaps = 2/107 (1%)

Query: 10  SITLTEVAIKKVSHLIKKKGNLNLK-LRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNG 68
           ++ +T+  I+++  L   + +   K LR+ ++ GGCSGFQY F  D+ TN DD +F+K+G
Sbjct: 54  AVHMTDNCIRRLKELQTSEPSAEDKMLRLSVETGGCSGFQYVFELDDKTNSDDRVFEKDG 113

Query: 69  IQLLIDSVSYQYLIGSEIDYKDDLDGSKFVIK-NPNAVTTCGCGSSF 114
           ++L++D++SY ++ G+ +DY ++L  S FV+  NP+AV  C C SSF
Sbjct: 114 VKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNPSAVGGCSCKSSF 160

Length = 163

>gnl|CDD|131052 TIGR01997, sufA_proteo, FeS assembly scaffold SufA

 Score = 79.5 bits (196), Expect = 1e-20
 Identities = 29/104 (27%), Positives = 55/104 (52%), Gaps = 1/104 (0%)

Query: 11  ITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGIQ 70
           ITLT+ A   +  L+ K+    + +R+ ++  GC+G +Y         KDD + + +G +
Sbjct: 3   ITLTDAAAIHIRELVAKRPEA-VGIRLGVKKTGCAGMEYVLDLVSEPKKDDDLIEHDGAK 61

Query: 71  LLIDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNAVTTCGCGSSF 114
           + +   +  +++G+++D+        F   NPNA + CGCG SF
Sbjct: 62  VFVAPEAVLFILGTQVDFVRTTLRQGFKFNNPNATSACGCGESF 105

This model represents the SufA protein of the SUF system of iron-sulfur cluster biosynthesis. This system performs FeS biosynthesis even during oxidative stress and tends to be absent in obligate anaerobic and microaerophilic bacteria [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 107

>gnl|CDD|213674 TIGR02011, IscA, iron-sulfur cluster assembly protein IscA

 Score = 78.7 bits (194), Expect = 2e-20
 Identities = 38/104 (36%), Positives = 58/104 (55%), Gaps = 1/104 (0%)

Query: 11  ITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGIQ 70
           ITLT+ A  +V+  +  +G     LR+ ++  GCSG  Y   F +    DDI+F+  G++
Sbjct: 1   ITLTDSAAARVNTFLANRGK-GFGLRLGVKTSGCSGMAYVLEFVDEPTPDDIVFEDKGVK 59

Query: 71  LLIDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNAVTTCGCGSSF 114
           ++ID  S QYL G+++D+  +     F   NPN    CGCG SF
Sbjct: 60  IVIDGKSLQYLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 103

This model represents the IscA component of the ISC system for iron-sulfur cluster assembly. The ISC system consists of IscRASU, HscAB and an Isc-specific ferredoxin. IscA previously was believed to act as a scaffold and now is seen as an iron donor protein. This clade is limited to the proteobacteria [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 105

>gnl|CDD|181914 PRK09502, iscA, iron-sulfur cluster assembly protein; Provisional

 Score = 76.8 bits (189), Expect = 1e-19
 Identities = 35/107 (32%), Positives = 60/107 (56%), Gaps = 1/107 (0%)

Query: 9   ISITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNG 68
           +SITL++ A  +V+  +  +G     LR+ ++  GCSG  Y   F +    +DI+F+  G
Sbjct: 1   MSITLSDSAAARVNTFLANRGK-GFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKG 59

Query: 69  IQLLIDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNAVTTCGCGSSFS 115
           +++++D  S Q+L G+++D+  +     F   NPN    CGCG SF 
Sbjct: 60  VKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESFH 106

Length = 107

>gnl|CDD|181915 PRK09504, sufA, iron-sulfur cluster assembly scaffold protein; Provisional

 Score = 61.7 bits (150), Expect = 2e-13
 Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 1/104 (0%)

Query: 11  ITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGIQ 70
           +TLT  A   +  L+ K+  +   +R+ ++  GC+GF Y        +KDD++F+ +G +
Sbjct: 18  LTLTPAAAAHIRELMAKQPGM-KGVRLGVKQTGCAGFGYVLDSVSEPDKDDLVFEHDGAK 76

Query: 71  LLIDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNAVTTCGCGSSF 114
           L +   +  ++ G+E+DY  +     F   NP A   CGCG SF
Sbjct: 77  LFVPLQAMPFIDGTEVDYVREGLNQIFKFHNPKAQNECGCGESF 120

Length = 122

>gnl|CDD|132384 TIGR03341, YhgI_GntY, IscR-regulated protein YhgI

 Score = 43.1 bits (102), Expect = 4e-06
 Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 5/97 (5%)

Query: 11  ITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMF---DEHTNKDDIIFKKN 67
           IT+TE A   ++ L+ K+ N    +RVF+   G    +    +   DE     DI  + N
Sbjct: 1   ITITEAAQAYLAKLLAKQ-NEGTGIRVFVVNPGTPYAECCVSYCPPDE-VEPSDIKLEFN 58

Query: 68  GIQLLIDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNA 104
           G    +D++S  +L  + ID+  D  G +  +K PNA
Sbjct: 59  GFSAYVDALSAPFLEDAVIDFVTDRMGGQLTLKAPNA 95

IscR (TIGR02010) is an iron-sulfur cluster-binding transcriptional regulator (see Genome Property GenProp0138). Members of this protein family include YhgI, whose expression is under control of IscR, and show sequence similarity to IscA, a known protein of iron-sulfur cluster biosynthesis. These two lines of evidence strongly suggest a role as an iron-sulfur cluster biosynthesis protein. An older study designated this protein GntY and suggested a role for it and for the product of an adjacent gene, based on complementation studies, in gluconate utilization [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 190

>gnl|CDD|183027 PRK11190, PRK11190, Fe/S biogenesis protein NfuA; Provisional

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 16/45 (35%), Positives = 24/45 (53%)

Query: 60  DDIIFKKNGIQLLIDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNA 104
            D   K +G    +D +S  +L  +EID+  D  GS+  +K PNA
Sbjct: 52  TDTELKFDGFSAYVDELSAPFLEDAEIDFVTDQLGSQLTLKAPNA 96

Length = 192

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	118
COG0316	110	sufA Fe-S cluster assembly scaffold protein [Postt	100.0
PRK13623	115	iron-sulfur cluster insertion protein ErpA; Provis	100.0
PRK09502	107	iscA iron-sulfur cluster assembly protein; Provisi	100.0
PRK09504	122	sufA iron-sulfur cluster assembly scaffold protein	100.0
TIGR02011	105	IscA iron-sulfur cluster assembly protein IscA. Th	100.0
PLN03082	163	Iron-sulfur cluster assembly; Provisional	100.0
TIGR01997	107	sufA_proteo FeS assembly scaffold SufA. This model	100.0
TIGR00049	105	Iron-sulfur cluster assembly accessory protein. Pr	100.0
KOG1120|consensus	134		100.0
KOG1119|consensus	199		99.96
TIGR01911	92	HesB_rel_seleno HesB-like selenoprotein. This mode	99.96
PRK11190	192	Fe/S biogenesis protein NfuA; Provisional	99.96
TIGR03341	190	YhgI_GntY IscR-regulated protein YhgI. IscR (TIGR0	99.95
PF01521	112	Fe-S_biosyn: Iron-sulphur cluster biosynthesis; In	99.94
COG4841	95	Uncharacterized protein conserved in bacteria [Fun	99.78
COG4918	114	Uncharacterized protein conserved in bacteria [Fun	99.27
COG3564	116	Uncharacterized protein conserved in bacteria [Fun	97.95
PF05610	95	DUF779: Protein of unknown function (DUF779); Inte	97.27

>COG0316 sufA Fe-S cluster assembly scaffold protein [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.1e-41  Score=222.69  Aligned_cols=109  Identities=52%  Similarity=0.966  Sum_probs=105.3

Q ss_pred             CcceeeCHHHHHHHHHHHHhcCCCCccEEEEEeCCCCCCeEEEEEEccCCCCCCeEEEeCCEEEEEcccchhhccCcEEE
Q psy9411           8 NISITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGIQLLIDSVSYQYLIGSEID   87 (118)
Q Consensus         8 ~~~I~IT~~A~~~l~~~~~~~~~~~~~lRi~v~~~GC~G~~~~l~~~~~~~~~D~v~~~~gi~v~id~~~~~~l~g~~ID   87 (118)
                      .++|+||++|++++++++++++.++.+|||+|+++||+|++|+|.|++++.++|.+++.+|++|+||+.++.||+|++||
T Consensus         2 ~~~itlT~~Aa~~v~~ll~~~~~~~~~lRv~V~~gGCsG~~Y~~~~~~~~~~~D~v~e~~g~~v~vD~~S~~~L~G~~ID   81 (110)
T COG0316           2 AMMITLTDAAAARVKALLAKEGEENLGLRVGVKGGGCSGFQYGLEFDDEINEDDTVFEQDGVKVVVDPKSLPYLEGTEID   81 (110)
T ss_pred             CCceeeCHHHHHHHHHHHHhccCCCceEEEEEeCCCCCCcEeEEEEcCCCCCCCEEEEeCCEEEEEChhhhhhhcCCEEE
Confidence            58999999999999999999966678999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCceEEEecCCCCCCCCCCCCCCc
Q psy9411          88 YKDDLDGSKFVIKNPNAVTTCGCGSSFST  116 (118)
Q Consensus        88 y~~~~~~~gF~i~~p~~~~~CgCG~sf~~  116 (118)
                      |.++..+++|+|+|||++.+||||+||++
T Consensus        82 yv~~~~g~~F~~~NPNA~~~CgCg~Sf~v  110 (110)
T COG0316          82 YVEDLLGSGFTFKNPNAKSSCGCGESFSV  110 (110)
T ss_pred             EEEcCcCCceEEECCCCCccccCCCCCCC
Confidence            99999999999999999999999999974

>PRK13623 iron-sulfur cluster insertion protein ErpA; Provisional

Probab=100.00  E-value=1.3e-40  Score=221.38  Aligned_cols=110  Identities=58%  Similarity=1.078  Sum_probs=103.6

Q ss_pred             CCcceeeCHHHHHHHHHHHHhcCCCCccEEEEEeCCCCCCeEEEEEEccCCCCCCeEEEeCCEEEEEcccchhhccCcEE
Q psy9411           7 NNISITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGIQLLIDSVSYQYLIGSEI   86 (118)
Q Consensus         7 ~~~~I~IT~~A~~~l~~~~~~~~~~~~~lRi~v~~~GC~G~~~~l~~~~~~~~~D~v~~~~gi~v~id~~~~~~l~g~~I   86 (118)
                      ++|+|+||++|+++|+++++.++.++.+|||+++++||+|++|+|.++++++++|++++.+|++|+||+.+++||+|++|
T Consensus         6 ~~~~i~iT~~A~~~i~~~~~~~~~~~~~LRi~v~~~GCsG~~y~l~l~~~~~~~D~v~e~~gv~v~id~~s~~~l~g~~I   85 (115)
T PRK13623          6 VPLPLVFTDAAAAKVKELIEEEGNPDLKLRVYITGGGCSGFQYGFTFDEQVNEDDTTIEKQGVTLVVDPMSLQYLVGAEV   85 (115)
T ss_pred             cCcceEECHHHHHHHHHHHhhCCCCceEEEEEEeCCCCCCcEEEEEECCCCCCCCEEEEcCCEEEEEcHHHHHHhCCCEE
Confidence            46999999999999999998766545679999999999999999999988899999999999999999999999999999


Q ss_pred             EEEeCCCCceEEEecCCCCCCCCCCCCCCc
Q psy9411          87 DYKDDLDGSKFVIKNPNAVTTCGCGSSFST  116 (118)
Q Consensus        87 Dy~~~~~~~gF~i~~p~~~~~CgCG~sf~~  116 (118)
                      ||.++..+++|+|+|||++++||||+||++
T Consensus        86 Dy~~~~~~~~F~f~NPn~~~~CgCg~SF~~  115 (115)
T PRK13623         86 DYTEGLEGSRFVIKNPNAKTTCGCGSSFSI  115 (115)
T ss_pred             EeecCCCcceEEEECCCCCcCCCCCcCccC
Confidence            999999999999999999999999999985

>PRK09502 iscA iron-sulfur cluster assembly protein; Provisional

Probab=100.00  E-value=7.6e-40  Score=215.27  Aligned_cols=107  Identities=33%  Similarity=0.710  Sum_probs=100.9

Q ss_pred             cceeeCHHHHHHHHHHHHhcCCCCccEEEEEeCCCCCCeEEEEEEccCCCCCCeEEEeCCEEEEEcccchhhccCcEEEE
Q psy9411           9 ISITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGIQLLIDSVSYQYLIGSEIDY   88 (118)
Q Consensus         9 ~~I~IT~~A~~~l~~~~~~~~~~~~~lRi~v~~~GC~G~~~~l~~~~~~~~~D~v~~~~gi~v~id~~~~~~l~g~~IDy   88 (118)
                      |+|+|||+|+++|+++++.++. ..+|||+++++||+|++|.|.|+++++++|.+++.+|++|+||+.++.||+|++|||
T Consensus         1 m~i~iT~~A~~~i~~l~~~~~~-~~~LRi~v~~~GCsG~~Y~l~~~~~~~~~D~~~~~~g~~v~id~~s~~~l~g~~IDy   79 (107)
T PRK09502          1 MSITLSDSAAARVNTFLANRGK-GFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDF   79 (107)
T ss_pred             CeEEECHHHHHHHHHHHhCcCC-CceEEEEEECCCcCCeeeEeeecCCCCCCCEEEEcCCeEEEEeHHHHhHhCCCEEEE
Confidence            6799999999999999987653 568999999999999999999987889999999999999999999999999999999


Q ss_pred             EeCCCCceEEEecCCCCCCCCCCCCCCc
Q psy9411          89 KDDLDGSKFVIKNPNAVTTCGCGSSFST  116 (118)
Q Consensus        89 ~~~~~~~gF~i~~p~~~~~CgCG~sf~~  116 (118)
                      .+++.+++|+|+|||++++||||+||++
T Consensus        80 ~~~~~~~~F~f~NPna~~~CgCG~Sf~~  107 (107)
T PRK09502         80 VKEGLNEGFKFTNPNVKDECGCGESFHV  107 (107)
T ss_pred             eeCCCCceEEEECCCCCCccCCCCCeeC
Confidence            9999999999999999999999999974

>PRK09504 sufA iron-sulfur cluster assembly scaffold protein; Provisional

Probab=100.00  E-value=1.8e-39  Score=217.97  Aligned_cols=114  Identities=29%  Similarity=0.538  Sum_probs=105.9

Q ss_pred             CccCCCCcceeeCHHHHHHHHHHHHhcCCCCccEEEEEeCCCCCCeEEEEEEccCCCCCCeEEEeCCEEEEEcccchhhc
Q psy9411           2 NENVKNNISITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGIQLLIDSVSYQYL   81 (118)
Q Consensus         2 ~~~~~~~~~I~IT~~A~~~l~~~~~~~~~~~~~lRi~v~~~GC~G~~~~l~~~~~~~~~D~v~~~~gi~v~id~~~~~~l   81 (118)
                      +++...+|+|+|||+|+++|+++++.++. ..+|||.|+++||+|++|.|.+++++.++|.+++.+|++|+||+.++.||
T Consensus         9 ~~~~~~~~~I~iT~~A~~~i~~l~~~~~~-~~~LRi~v~~gGCsG~~Y~~~l~~e~~~~D~v~e~~g~~v~Id~~s~~~L   87 (122)
T PRK09504          9 NPDDFAWQGLTLTPAAAAHIRELMAKQPG-MKGVRLGVKQTGCAGFGYVLDSVSEPDKDDLVFEHDGAKLFVPLQAMPFI   87 (122)
T ss_pred             ccCcCCcCCEEECHHHHHHHHHHHhcCCC-CceEEEEEECCCCCceEEEeeecCCCCCCCEEEEeCCEEEEEcHHHHHhh
Confidence            44556689999999999999999987653 46899999999999999999998889999999999999999999999999


Q ss_pred             cCcEEEEEeCCCCceEEEecCCCCCCCCCCCCCCc
Q psy9411          82 IGSEIDYKDDLDGSKFVIKNPNAVTTCGCGSSFST  116 (118)
Q Consensus        82 ~g~~IDy~~~~~~~gF~i~~p~~~~~CgCG~sf~~  116 (118)
                      +|++|||.++..+++|+|.|||++++||||+||++
T Consensus        88 ~g~~IDy~~~~~~~gF~f~NPna~~~CgCG~SF~v  122 (122)
T PRK09504         88 DGTEVDYVREGLNQIFKFHNPKAQNECGCGESFGV  122 (122)
T ss_pred             CCcEEEeecCCCcceEEEECCCCCCCcCCCCCeeC
Confidence            99999999999999999999999999999999974

>TIGR02011 IscA iron-sulfur cluster assembly protein IscA

Probab=100.00  E-value=1.4e-38  Score=208.57  Aligned_cols=105  Identities=36%  Similarity=0.733  Sum_probs=99.4

Q ss_pred             eeeCHHHHHHHHHHHHhcCCCCccEEEEEeCCCCCCeEEEEEEccCCCCCCeEEEeCCEEEEEcccchhhccCcEEEEEe
Q psy9411          11 ITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGIQLLIDSVSYQYLIGSEIDYKD   90 (118)
Q Consensus        11 I~IT~~A~~~l~~~~~~~~~~~~~lRi~v~~~GC~G~~~~l~~~~~~~~~D~v~~~~gi~v~id~~~~~~l~g~~IDy~~   90 (118)
                      |+|||+|+++|++++++++. +.+|||+++++||+|++|.|.++++++++|.+++.+|++|+||+.++.||+|++|||.+
T Consensus         1 I~iT~~A~~~i~~~~~~~~~-~~~lRi~v~~~GCsG~~y~l~l~~~~~~~D~v~~~~g~~v~id~~s~~~l~g~~IDy~~   79 (105)
T TIGR02011         1 ITLTDSAAARVNTFLANRGK-GFGLRLGVKTSGCSGMAYVLEFVDEPTPDDIVFEDKGVKIVIDGKSLQYLDGTQLDFVK   79 (105)
T ss_pred             CEECHHHHHHHHHHHhccCC-CceEEEEEeCCCCCCEEEEeeecCCCCCCCEEEEcCCEEEEEcHHHhHHhCCCEEEEec
Confidence            78999999999999987653 46899999999999999999998778999999999999999999999999999999999


Q ss_pred             CCCCceEEEecCCCCCCCCCCCCCCc
Q psy9411          91 DLDGSKFVIKNPNAVTTCGCGSSFST  116 (118)
Q Consensus        91 ~~~~~gF~i~~p~~~~~CgCG~sf~~  116 (118)
                      +..+++|+|+|||++++||||+||++
T Consensus        80 ~~~~~~F~~~nPna~~~CgCg~Sf~~  105 (105)
T TIGR02011        80 EGLNEGFKFTNPNVKDECGCGESFHV  105 (105)
T ss_pred             CCCcceEEEECCCCCccCCCCCCccC
Confidence            99999999999999999999999974

This clade is limited to the proteobacteria.

>PLN03082 Iron-sulfur cluster assembly; Provisional

Probab=100.00  E-value=1.7e-38  Score=221.96  Aligned_cols=110  Identities=38%  Similarity=0.758  Sum_probs=103.1

Q ss_pred             CcceeeCHHHHHHHHHHHHhcCC-CCccEEEEEeCCCCCCeEEEEEEccCCCCCCeEEEeCCEEEEEcccchhhccCcEE
Q psy9411           8 NISITLTEVAIKKVSHLIKKKGN-LNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGIQLLIDSVSYQYLIGSEI   86 (118)
Q Consensus         8 ~~~I~IT~~A~~~l~~~~~~~~~-~~~~lRi~v~~~GC~G~~~~l~~~~~~~~~D~v~~~~gi~v~id~~~~~~l~g~~I   86 (118)
                      .+.|+|||+|+++|+++++.++. ++.+|||+|+++||+|++|.|.+++++.++|.+++.+|++|+||+.++.||+|++|
T Consensus        52 ~~~I~lTd~A~~~ik~l~~~~~~~~~~~LRl~V~~gGCSG~~Y~~~ld~~~~~~D~v~e~~Gv~vvVD~~s~~~L~Gs~I  131 (163)
T PLN03082         52 LDAVHMTDNCIRRLKELQTSEPSAEDKMLRLSVETGGCSGFQYVFELDDKTNSDDRVFEKDGVKLVVDNISYDFVKGATV  131 (163)
T ss_pred             CCceEECHHHHHHHHHHHHhCCCCCCceEEEEEecCCCCCceeeeEEccCCCCCCEEEecCCeEEEECHHHHHHhCCCEE
Confidence            35799999999999999988653 34689999999999999999999988889999999999999999999999999999


Q ss_pred             EEEeCCCCceEEE-ecCCCCCCCCCCCCCCcC
Q psy9411          87 DYKDDLDGSKFVI-KNPNAVTTCGCGSSFSTY  117 (118)
Q Consensus        87 Dy~~~~~~~gF~i-~~p~~~~~CgCG~sf~~~  117 (118)
                      ||.+++.+++|+| .|||++++||||+||++|
T Consensus       132 DYve~l~~~gF~f~~NPna~~~CgCG~SF~vk  163 (163)
T PLN03082        132 DYVEELIRSAFVVSTNPSAVGGCSCKSSFMVK  163 (163)
T ss_pred             EeecCCCCCeeEEecCCCCCCCcCCCCCEeCC
Confidence            9999999999999 999999999999999985

>TIGR01997 sufA_proteo FeS assembly scaffold SufA

Probab=100.00  E-value=4.9e-38  Score=206.66  Aligned_cols=106  Identities=27%  Similarity=0.608  Sum_probs=100.3

Q ss_pred             ceeeCHHHHHHHHHHHHhcCCCCccEEEEEeCCCCCCeEEEEEEccCCCCCCeEEEeCCEEEEEcccchhhccCcEEEEE
Q psy9411          10 SITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGIQLLIDSVSYQYLIGSEIDYK   89 (118)
Q Consensus        10 ~I~IT~~A~~~l~~~~~~~~~~~~~lRi~v~~~GC~G~~~~l~~~~~~~~~D~v~~~~gi~v~id~~~~~~l~g~~IDy~   89 (118)
                      +|+|||+|+++|+++++.++. ..+|||+++++||+|++|.|.+.++++++|.+++.+|++|+||+.++.||+|++|||.
T Consensus         2 ~i~iT~~A~~~i~~l~~~~~~-~~~lRi~v~~~GC~G~~y~~~l~~~~~~~D~v~~~~g~~v~id~~s~~~l~g~~IDy~   80 (107)
T TIGR01997         2 VITLTDAAAIHIRELVAKRPE-AVGIRLGVKKTGCAGMEYVLDLVSEPKKDDDLIEHDGAKVFVAPEAVLFILGTQVDFV   80 (107)
T ss_pred             eEEECHHHHHHHHHHHhcCCC-CcEEEEEEECCCCCCcEEEeeecCCCCCCCEEEecCCEEEEEcHHHHhhhCCCEEEEE
Confidence            599999999999999987653 4689999999999999999999878899999999999999999999999999999999


Q ss_pred             eCCCCceEEEecCCCCCCCCCCCCCCc
Q psy9411          90 DDLDGSKFVIKNPNAVTTCGCGSSFST  116 (118)
Q Consensus        90 ~~~~~~gF~i~~p~~~~~CgCG~sf~~  116 (118)
                      ++..+++|+|+|||++++||||+||++
T Consensus        81 ~~~~~~~F~~~NPn~~~~CgCG~Sf~~  107 (107)
T TIGR01997        81 RTTLRQGFKFNNPNATSACGCGESFEL  107 (107)
T ss_pred             EcCCcceEEEECCCCCCccCCCCCccC
Confidence            999999999999999999999999974

This model represents the SufA protein of the SUF system of iron-sulfur cluster biosynthesis. This system performs FeS biosynthesis even during oxidative stress and tends to be absent in obligate anaerobic and microaerophilic bacteria.

>TIGR00049 Iron-sulfur cluster assembly accessory protein

Probab=100.00  E-value=4.6e-37  Score=200.94  Aligned_cols=105  Identities=51%  Similarity=0.939  Sum_probs=99.4

Q ss_pred             eeCHHHHHHHHHHHHhcCCCCccEEEEEeCCCCCCeEEEEEEccCCCCCCeEEEeCCEEEEEcccchhhccCcEEEEEeC
Q psy9411          12 TLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGIQLLIDSVSYQYLIGSEIDYKDD   91 (118)
Q Consensus        12 ~IT~~A~~~l~~~~~~~~~~~~~lRi~v~~~GC~G~~~~l~~~~~~~~~D~v~~~~gi~v~id~~~~~~l~g~~IDy~~~   91 (118)
                      +||++|+++|+++++.++.++.+|||+++.+||+|++|+|.++++++++|++++.+|++|+||+.+++||+|++|||.++
T Consensus         1 ~iT~~A~~~l~~~~~~~~~~~~~lRi~~~~~Gc~G~~~~l~l~~~~~~~D~~~~~~gi~~~id~~~~~~l~~~~IDy~~~   80 (105)
T TIGR00049         1 TLTDSAAKRIKALLAGEGEPNLGLRVGVKGGGCSGLQYGLEFDDEPNEDDEVFEQDGVKVVVDPKSLPYLDGSEIDYVEE   80 (105)
T ss_pred             CcCHHHHHHHHHHHhcCCCCceEEEEEEecCCCCCeEEEEeecCCCCCCCEEEEcCCEEEEEeHHHHhhhCCCEEEEeec
Confidence            69999999999999887654578999999999999999999998789999999999999999999999999999999999


Q ss_pred             CCCceEEEecCCCCCCCCCCCCCCc
Q psy9411          92 LDGSKFVIKNPNAVTTCGCGSSFST  116 (118)
Q Consensus        92 ~~~~gF~i~~p~~~~~CgCG~sf~~  116 (118)
                      ..+++|+|+|||+.++||||+||++
T Consensus        81 ~~~~~f~i~nPn~~~~c~cg~sf~~  105 (105)
T TIGR00049        81 LLGSGFTFTNPNAKGTCGCGKSFSV  105 (105)
T ss_pred             CCcceEEEECCCCCccCCCCcCccC
Confidence            9999999999999999999999984

Proteins in this subfamily appear to be associated with the process of FeS-cluster assembly. The HesB proteins are associated with the nif gene cluster and the Rhizobium gene IscN has been shown to be required for nitrogen fixation. Nitrogenase includes multiple FeS clusters and many genes for their assembly. The E. coli SufA protein is associated with SufS, a NifS homolog and SufD which are involved in the FeS cluster assembly of the FhnF protein. The Azotobacter protein IscA (homologs of which are also found in E.coli) is associated which IscS, another NifS homolog and IscU, a nifU homolog as well as other factors consistent with a role in FeS cluster chemistry. A homolog from Geobacter contains a selenocysteine in place of an otherwise invariant cysteine, further suggesting a role in redox chemistry.

>KOG1120|consensus

Probab=100.00  E-value=9.3e-33  Score=182.79  Aligned_cols=108  Identities=36%  Similarity=0.705  Sum_probs=102.8

Q ss_pred             CcceeeCHHHHHHHHHHHHhcCCCCccEEEEEeCCCCCCeEEEEEEccCCCCCCeEEEeCCEEEEEcccchhhccCcEEE
Q psy9411           8 NISITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGIQLLIDSVSYQYLIGSEID   87 (118)
Q Consensus         8 ~~~I~IT~~A~~~l~~~~~~~~~~~~~lRi~v~~~GC~G~~~~l~~~~~~~~~D~v~~~~gi~v~id~~~~~~l~g~~ID   87 (118)
                      +.-||+||.|+++|+++++++++ ...|||.|+..||+|++|.|.+.+.+...|++++.+|++|+||++++..+-|+++|
T Consensus        27 k~~ltLTp~Av~~ik~ll~~~~e-~~~lrigVk~rGCnGlsYtleY~~~kgkfDE~VeqdGv~I~ie~KA~l~liGteMD  105 (134)
T KOG1120|consen   27 KAALTLTPSAVNHIKQLLSDKPE-DVCLRIGVKQRGCNGLSYTLEYTKTKGKFDEVVEQDGVRIFIEPKALLTLIGTEMD  105 (134)
T ss_pred             ccccccCHHHHHHHHHHHHhCCc-CceeEEEEecCCcCcceeeeeeeccCCCCcceeeecCcEEEEcccceeeeccceeh
Confidence            57899999999999999998765 57999999999999999999999888899999999999999999999999999999


Q ss_pred             EEeCCCCceEEEecCCCCCCCCCCCCCCc
Q psy9411          88 YKDDLDGSKFVIKNPNAVTTCGCGSSFST  116 (118)
Q Consensus        88 y~~~~~~~gF~i~~p~~~~~CgCG~sf~~  116 (118)
                      |+++...++|+|.|||+++.||||+||++
T Consensus       106 yvddkL~Sefvf~npna~gtcGcgeSf~~  134 (134)
T KOG1120|consen  106 YVDDKLSSEFVFSNPNAKGTCGCGESFSV  134 (134)
T ss_pred             hhhhhhcCceEeeCCCccccccccccccC
Confidence            99999999999999999999999999974

>KOG1119|consensus

Probab=99.96  E-value=6.6e-30  Score=178.56  Aligned_cols=108  Identities=38%  Similarity=0.742  Sum_probs=101.5

Q ss_pred             CCcceeeCHHHHHHHHHHHHhcCCCCccEEEEEeCCCCCCeEEEEEEccCCCCCCeEEEeCCEEEEEcccchhhccCcEE
Q psy9411           7 NNISITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGIQLLIDSVSYQYLIGSEI   86 (118)
Q Consensus         7 ~~~~I~IT~~A~~~l~~~~~~~~~~~~~lRi~v~~~GC~G~~~~l~~~~~~~~~D~v~~~~gi~v~id~~~~~~l~g~~I   86 (118)
                      ....+.|++.|.++++++.+..+   ..|||.|++|||+|++|.+.+|....++|.+++.+|.+|+||..++.|++|++|
T Consensus        90 ~~~~~~lsds~~krl~EI~~~~p---e~LRl~VegGGCsGFQYkf~LD~~in~dD~vf~e~~arVVvD~~SL~~~kGatv  166 (199)
T KOG1119|consen   90 PGFNLHLSDSCSKRLKEIYENSP---EFLRLTVEGGGCSGFQYKFRLDNKINNDDRVFVENGARVVVDNVSLNLLKGATV  166 (199)
T ss_pred             CCceEEehhHHHHHHHHHHhCCc---ceEEEEEecCCccceEEEEEecCCCCCcceEEeeCCcEEEEeccchhhccCcee
Confidence            34679999999999999998764   589999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCceEEE-ecCCCCCCCCCCCCCCcC
Q psy9411          87 DYKDDLDGSKFVI-KNPNAVTTCGCGSSFSTY  117 (118)
Q Consensus        87 Dy~~~~~~~gF~i-~~p~~~~~CgCG~sf~~~  117 (118)
                      ||.+++.+++|++ .||.++.+|+||+||.+|
T Consensus       167 dy~~ELIrSsF~ivnNP~A~~gCsCgSSF~ik  198 (199)
T KOG1119|consen  167 DYTNELIRSSFRIVNNPSAKQGCSCGSSFDIK  198 (199)
T ss_pred             ehHHHHhhhhheeecCcccccCCCCCcccccC
Confidence            9999999999987 579999999999999986

>TIGR01911 HesB_rel_seleno HesB-like selenoprotein

Probab=99.96  E-value=1.1e-28  Score=158.24  Aligned_cols=91  Identities=22%  Similarity=0.361  Sum_probs=84.4

Q ss_pred             cceeeCHHHHHHHHHHHHhcCCCCccEEEEEeCCCCCCeEEEEEEccCCCCCCeEEEeCCEEEEEcccchhhccCcEEEE
Q psy9411           9 ISITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGIQLLIDSVSYQYLIGSEIDY   88 (118)
Q Consensus         9 ~~I~IT~~A~~~l~~~~~~~~~~~~~lRi~v~~~GC~G~~~~l~~~~~~~~~D~v~~~~gi~v~id~~~~~~l~g~~IDy   88 (118)
                      .+|+|||+|+++|++++++++.+..+|||+|.++||+|++|.|.+++ +.++|.+++.+|++|+||+.++.||.|++|||
T Consensus         2 ~~i~lT~~A~~~i~~ll~~~~~~~~~LRi~v~~gGCsG~~Y~~~ld~-~~~~D~v~~~~gv~v~vD~~s~~~l~G~~iDy   80 (92)
T TIGR01911         2 KIVAMSDDAYEEFKDFLKENDIDNDVIRIHFAGMGCMGPMFNLIADE-EKEGDEIEKIHDLTFLIDKNLIDQFGGFSIEC   80 (92)
T ss_pred             CceEECHHHHHHHHHHHHhCCCCCceEEEEEeCCCccCcccceEecC-CCCCCEEEEeCCEEEEECHHHHHHhCCCEEEE
Confidence            47999999999999999887654457999999999999999999987 58999999999999999999999999999999


Q ss_pred             EeCCCCceEEEe
Q psy9411          89 KDDLDGSKFVIK  100 (118)
Q Consensus        89 ~~~~~~~gF~i~  100 (118)
                      .++..+++|+|+
T Consensus        81 ~~~~~g~gF~~~   92 (92)
T TIGR01911        81 AEENFGAGFSLD   92 (92)
T ss_pred             ecCCCCCcEEeC
Confidence            999999999984

This model represents a family of small proteins related to HesB and its close homologs, which are likely to be invovlved in iron-sulfur cluster assembly (See TIGR00049 and pfam01521). Several members are selenoproteins, with a TGA codon and Sec residue that aligns to the conserved Cys of the HesB domain. A variable Cys/Ser/Gly-rich C-terminal region is not included in the seed alignment and model.

>PRK11190 Fe/S biogenesis protein NfuA; Provisional

Probab=99.96  E-value=2.5e-28  Score=174.84  Aligned_cols=96  Identities=26%  Similarity=0.465  Sum_probs=89.8

Q ss_pred             ceeeCHHHHHHHHHHHHhcCCCCccEEEEEeCCCCCCeEEEEEE--ccCCCCCCeEEEeCCEEEEEcccchhhccCcEEE
Q psy9411          10 SITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMF--DEHTNKDDIIFKKNGIQLLIDSVSYQYLIGSEID   87 (118)
Q Consensus        10 ~I~IT~~A~~~l~~~~~~~~~~~~~lRi~v~~~GC~G~~~~l~~--~~~~~~~D~v~~~~gi~v~id~~~~~~l~g~~ID   87 (118)
                      ||+||++|+++|++++++++. +.+|||+|+++||+|++|++.|  ++++.++|.+++.+|++|+||+.++.||+|++||
T Consensus         1 ~i~iTd~A~~~i~~ll~~~~~-~~~LRI~V~~gGCsG~~Y~~~~~~~~~~~~~D~v~e~~gv~v~Vd~~S~~~L~G~~ID   79 (192)
T PRK11190          1 MITISDAAQAHFAKLLANQEE-GTQIRVFVINPGTPNAECGVSYCPPDAVEATDTELKFDGFSAYVDELSAPFLEDAEID   79 (192)
T ss_pred             CcEECHHHHHHHHHHHhcCCC-CceEEEEEECCCcCCceeeeEEeecCCCCCCCEEEEeCCEEEEECcchHhHhCCCEEE
Confidence            589999999999999987653 4689999999999999999999  6778899999999999999999999999999999


Q ss_pred             EEeCCCCceEEEecCCCCC
Q psy9411          88 YKDDLDGSKFVIKNPNAVT  106 (118)
Q Consensus        88 y~~~~~~~gF~i~~p~~~~  106 (118)
                      |.++..+++|+|+|||++.
T Consensus        80 yve~~~g~gF~f~NPNa~~   98 (192)
T PRK11190         80 FVTDQLGSQLTLKAPNAKM   98 (192)
T ss_pred             EeecCCCCceEEECCCCCC
Confidence            9999999999999999974

>TIGR03341 YhgI_GntY IscR-regulated protein YhgI

Probab=99.95  E-value=2.1e-27  Score=169.94  Aligned_cols=95  Identities=27%  Similarity=0.425  Sum_probs=88.5

Q ss_pred             eeeCHHHHHHHHHHHHhcCCCCccEEEEEeCCCCCCeEEEEEE--ccCCCCCCeEEEeCCEEEEEcccchhhccCcEEEE
Q psy9411          11 ITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMF--DEHTNKDDIIFKKNGIQLLIDSVSYQYLIGSEIDY   88 (118)
Q Consensus        11 I~IT~~A~~~l~~~~~~~~~~~~~lRi~v~~~GC~G~~~~l~~--~~~~~~~D~v~~~~gi~v~id~~~~~~l~g~~IDy   88 (118)
                      |+||++|+++|+++++.++ ++.+|||+|+++||+|++|+|.+  .++++++|.+++.+|++|+||+.++.||+|++|||
T Consensus         1 I~IT~~A~~~l~~ll~~~~-~~~~LRv~V~~gGCsG~~Y~l~~~~~~~~~~~D~v~e~~g~~v~Vd~~s~~~L~g~~IDy   79 (190)
T TIGR03341         1 ITITEAAQAYLAKLLAKQN-EGTGIRVFVVNPGTPYAECCVSYCPPDEVEPSDIKLEFNGFSAYVDALSAPFLEDAVIDF   79 (190)
T ss_pred             CEECHHHHHHHHHHHhhCC-CCceEEEEEECCccCCceeeeEEcccCCCCCCCEEEEeCCEEEEEccchhhHhCCCEEEE
Confidence            6899999999999998765 45689999999999999999999  56688999999999999999999999999999999


Q ss_pred             EeCCCCceEEEecCCCCC
Q psy9411          89 KDDLDGSKFVIKNPNAVT  106 (118)
Q Consensus        89 ~~~~~~~gF~i~~p~~~~  106 (118)
                      .++..+++|+|+|||++.
T Consensus        80 ve~~~g~gF~f~NPna~~   97 (190)
T TIGR03341        80 VTDRMGGQLTLKAPNAKM   97 (190)
T ss_pred             eecCCCceeEEeCCccCC
Confidence            999999999999999864

IscR (TIGR02010) is an iron-sulfur cluster-binding transcriptional regulator (see Genome Property GenProp0138). Members of this protein family include YhgI, whose expression is under control of IscR, and show sequence similarity to IscA, a known protein of iron-sulfur cluster biosynthesis. These two lines of evidence strongly suggest a role as an iron-sulfur cluster biosynthesis protein. An older study designated this protein GntY and suggested a role for it and for the product of an adjacent gene, based on complementation studies, in gluconate utilization.

>PF01521 Fe-S_biosyn: Iron-sulphur cluster biosynthesis; InterPro: IPR000361 The proteins in this entry are variously annotated as iron-sulphur cluster insertion protein or Fe/S biogenesis protein

Probab=99.94  E-value=1.5e-26  Score=152.53  Aligned_cols=101  Identities=39%  Similarity=0.788  Sum_probs=92.9

Q ss_pred             cceeeCHHHHHHHHHHHHhcCCCCccEEEEEeCCC--------CC-CeEEEEEEccCC-CCCCeEEEeCCEEEEEcccch
Q psy9411           9 ISITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGG--------CS-GFQYGFMFDEHT-NKDDIIFKKNGIQLLIDSVSY   78 (118)
Q Consensus         9 ~~I~IT~~A~~~l~~~~~~~~~~~~~lRi~v~~~G--------C~-G~~~~l~~~~~~-~~~D~v~~~~gi~v~id~~~~   78 (118)
                      |.|+||++|+++|++++.+++.  . |||+++.+|        |+ |++|.|.+++++ .+.|.+++.+|++|+|++.++
T Consensus         1 M~I~iT~~A~~~l~~~~~~~~~--~-irl~~~~gg~p~~~~~~C~~g~~y~l~~~~~~~~~~D~~~~~~~~~i~i~~~~~   77 (112)
T PF01521_consen    1 MKITITDAAAERLKQLLKEDPK--K-IRLFVDDGGSPYSREGCCSIGFSYSLALVDKPDEEYDIVIESNGFTIYIDKYSL   77 (112)
T ss_dssp             -EEEE-HHHHHHHHHHHHCTTE--S-EEEEEEEESSCCGGSS-TTSEEEEEEEEESSTSTTSCEEEEETTEEEEEEGGGH
T ss_pred             CEEEECHHHHHHHHHHHhcCCC--E-EEEEEECCCcccccCCCCCCCcEEeEEEeecccccceEEEeeeEEEEEEeccHh
Confidence            8999999999999999998763  2 999999998        99 999999999877 899999999999999999999


Q ss_pred             hhc-cCcEEEEEeCCCCceEEEecCCCCCCCCCCC
Q psy9411          79 QYL-IGSEIDYKDDLDGSKFVIKNPNAVTTCGCGS  112 (118)
Q Consensus        79 ~~l-~g~~IDy~~~~~~~gF~i~~p~~~~~CgCG~  112 (118)
                      +|| ++++|||.++..+.+|++.||+..+.|+||.
T Consensus        78 ~~l~~~~~iD~~~~~~~~~f~~~~~~~~~~~~~~~  112 (112)
T PF01521_consen   78 WYLDEGLTIDYVEDLGGFGFKSDNPNLDSNCGCGD  112 (112)
T ss_dssp             HHH-TTEEEEEEEETTEEEEEEETTTEEEEECECE
T ss_pred             hhhhCCCEEEEEEccCccEEEECCCCcCceeccCC
Confidence            999 8999999999989999999999999999983

They appear to be involved in Fe-S cluster biogenesis. This family includes IscA, HesB, YadR and YfhF-like proteins. The hesB gene is expressed only under nitrogen fixation conditions []. IscA, an 11 kDa member of the hesB family of proteins, binds iron and [2Fe-2S] clusters, and participates in the biosynthesis of iron-sulphur proteins. IscA is able to bind at least 2 iron ions per dimer []. Other members of this family include various hypothetical proteins that also contain the NifU-like domain (IPR001075 from INTERPRO) suggesting that they too are able to bind iron and are involved in Fe-S cluster biogenesis. The HesB family are found in species as divergent as Homo sapiens (Human) and Haemophilus influenzae suggesting that these proteins are involved in basic cellular functions []. ; PDB: 2D2A_A 1X0G_D 1NWB_A 2K4Z_A 1R94_B 1R95_A 1S98_B 2P2E_A 2QGO_A 2APN_A.

>COG4841 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.78  E-value=6e-19  Score=110.29  Aligned_cols=88  Identities=25%  Similarity=0.448  Sum_probs=75.0

Q ss_pred             cceeeCHHHHHHHHHHHHhcCCCCccEEEEEeCCCCC----CeEEEEEEccCCCCCCeEEEeCCEEEEEcccchhhccC-
Q psy9411           9 ISITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCS----GFQYGFMFDEHTNKDDIIFKKNGIQLLIDSVSYQYLIG-   83 (118)
Q Consensus         9 ~~I~IT~~A~~~l~~~~~~~~~~~~~lRi~v~~~GC~----G~~~~l~~~~~~~~~D~v~~~~gi~v~id~~~~~~l~g-   83 (118)
                      |+|+||++|.+|+++.+...+  +..||++++.|||+    |++.+++.+. |+|--...+.+|++|+|+.+++||+++ 
T Consensus         1 Mni~vtd~A~~wfk~E~~l~~--g~~vrffvRyGG~~~~~~GFS~gv~~e~-PkE~g~~q~~Dgltffiee~DlWYF~d~   77 (95)
T COG4841           1 MNIEVTDQALKWFKEELDLEE--GNKVRFFVRYGGCSSLQQGFSLGVAKEV-PKEIGYKQEYDGLTFFIEEKDLWYFDDH   77 (95)
T ss_pred             CceEEcHHHHHHHHHhcCCCC--CCEEEEEEEEcCcccccCCcceeeeccC-chhhchheeecCeEEEEecCceEEEcCC
Confidence            889999999999999998876  57899999999998    5555555432 667556668999999999999999998 


Q ss_pred             -cEEEEEeCCCCceEEE
Q psy9411          84 -SEIDYKDDLDGSKFVI   99 (118)
Q Consensus        84 -~~IDy~~~~~~~gF~i   99 (118)
                       ++|||.++.+...|..
T Consensus        78 d~~v~y~~~~Dei~fs~   94 (95)
T COG4841          78 DLKVDYSPDTDEISFSY   94 (95)
T ss_pred             cEEEeccCCCCcceeec
Confidence             9999999888777764

>COG4918 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.27  E-value=1.9e-11  Score=78.55  Aligned_cols=92  Identities=17%  Similarity=0.174  Sum_probs=72.0

Q ss_pred             cceeeCHHHHHHHHHHHHhcCCCCccEEEEEeCCCCCC-eEEEEEEccCCCCCCeEEEeCCEEEEEcccchhhccC-cEE
Q psy9411           9 ISITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSG-FQYGFMFDEHTNKDDIIFKKNGIQLLIDSVSYQYLIG-SEI   86 (118)
Q Consensus         9 ~~I~IT~~A~~~l~~~~~~~~~~~~~lRi~v~~~GC~G-~~~~l~~~~~~~~~D~v~~~~gi~v~id~~~~~~l~g-~~I   86 (118)
                      |.|++|++|+++|++...........+|...++.||.+ -.+.+++.++.+..|..++.++.++++-.....||++ ++|
T Consensus         1 M~Itftd~a~~~l~~a~d~nl~~~~hl~ydtEgc~Ca~SGi~t~rlvae~tg~d~~idsn~gPiyik~~~~~Ff~D~mti   80 (114)
T COG4918           1 MKITFTDKAADKLKAAGDVNLVFDDHLLYDTEGCACAGSGISTYRLVAEETGFDASIDSNFGPIYIKDYGSYFFQDEMTI   80 (114)
T ss_pred             CeEEecHHHHHHHHHhhccCcCccceEEEeccccccccCCcceEEEEEeccCcccccccCCCcEEEEecceeEecceeee
Confidence            78999999999999887665433456777777777753 2466777666678899999999999999999999987 999


Q ss_pred             EEEeCCCCceEEEecC
Q psy9411          87 DYKDDLDGSKFVIKNP  102 (118)
Q Consensus        87 Dy~~~~~~~gF~i~~p  102 (118)
                      ||.+..  ....+++|
T Consensus        81 dyN~~~--ktl~LkS~   94 (114)
T COG4918          81 DYNPSY--KTLELKST   94 (114)
T ss_pred             ecCCcc--ceEEEcCh
Confidence            999875  44555544

>COG3564 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.95  E-value=0.00015  Score=46.65  Aligned_cols=91  Identities=20%  Similarity=0.364  Sum_probs=64.9

Q ss_pred             CCcceeeCHHHHHHHHHHHHhcCCCCccEEEEEeCCCCCCeEEEEEEccC---CCCCCeEE-EeCCEEEEEcccchhhcc
Q psy9411           7 NNISITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEH---TNKDDIIF-KKNGIQLLIDSVSYQYLI   82 (118)
Q Consensus         7 ~~~~I~IT~~A~~~l~~~~~~~~~~~~~lRi~v~~~GC~G~~~~l~~~~~---~~~~D~v~-~~~gi~v~id~~~~~~l~   82 (118)
                      +...++.|++|++-|.++..+.+    .| +|-..+||+.-+--|.+...   ..++|+.+ +.+|++|||......+-+
T Consensus         3 ~~~~V~aT~aAl~Li~~l~~~hg----pv-mFHQSGGCCDGSsPMCYP~~~fivGd~DvlLG~i~gvPvyIs~~QyeaWK   77 (116)
T COG3564           3 MPARVLATPAALDLIAELQAEHG----PV-MFHQSGGCCDGSSPMCYPRADFIVGDNDVLLGEIDGVPVYISGPQYEAWK   77 (116)
T ss_pred             CCcceecCHHHHHHHHHHHHhcC----CE-EEeccCCccCCCCCccccccceeecCCceEEeeeCCEEEEecCcHHhhhh
Confidence            56778999999999999988875    23 44456888622333444221   24666655 689999999998887776


Q ss_pred             C--cEEEEEeCCCCceEEEecCC
Q psy9411          83 G--SEIDYKDDLDGSKFVIKNPN  103 (118)
Q Consensus        83 g--~~IDy~~~~~~~gF~i~~p~  103 (118)
                      .  ++||-++.. |+.|.+.|-.
T Consensus        78 HTqLIIDVVpGR-GGmFSLdng~   99 (116)
T COG3564          78 HTQLIIDVVPGR-GGMFSLDNGR   99 (116)
T ss_pred             ccEEEEEEecCC-CceeEccCCc
Confidence            4  899999876 5679888643

>PF05610 DUF779: Protein of unknown function (DUF779); InterPro: IPR008497 This family consists of several bacterial proteins of unknown function

Probab=97.27  E-value=0.0045  Score=39.67  Aligned_cols=78  Identities=22%  Similarity=0.468  Sum_probs=55.0

Q ss_pred             HHHHHHhcCCCCccEEEEEeCCCCCCeEEEEEEccC---CCCCCeEE-EeCCEEEEEcccchhhccC--cEEEEEeCCCC
Q psy9411          21 VSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEH---TNKDDIIF-KKNGIQLLIDSVSYQYLIG--SEIDYKDDLDG   94 (118)
Q Consensus        21 l~~~~~~~~~~~~~lRi~v~~~GC~G~~~~l~~~~~---~~~~D~v~-~~~gi~v~id~~~~~~l~g--~~IDy~~~~~~   94 (118)
                      |+++.++.+    .| ++-..+||+.-+-=+.+...   ..+.|+.+ +..|++|||.++...|.+.  ++||-++.. +
T Consensus         3 i~~L~~~HG----~l-mFhQSGGCCDGSaPmC~p~gef~~g~~DV~LG~i~g~~fym~~~qfeywkht~L~iDVv~Gr-G   76 (95)
T PF05610_consen    3 IRRLKAKHG----PL-MFHQSGGCCDGSAPMCYPAGEFRVGDSDVLLGEIGGVPFYMSKDQFEYWKHTQLTIDVVPGR-G   76 (95)
T ss_pred             HHHHHHhcC----CE-EEEeCCCCCCCCcceeEeCCceecCCCcEEEEEecCeEEEEchHHHHHhhCcEEEEEEEecC-C
Confidence            455555554    23 34456888733444555421   44677655 7899999999999999997  899998855 5


Q ss_pred             ceEEEecCCC
Q psy9411          95 SKFVIKNPNA  104 (118)
Q Consensus        95 ~gF~i~~p~~  104 (118)
                      .+|.+.+|..
T Consensus        77 ~~FSLE~~~G   86 (95)
T PF05610_consen   77 GGFSLEAPEG   86 (95)
T ss_pred             CeeeccCCCC
Confidence            8899998875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	118
2apn_A	114	Hi1723 Solution Structure Length = 114		4e-29
1nwb_A	124	Solution Nmr Structure Of Protein Aq_1857 From Aqui		2e-18
1r94_A	118	Crystal Structure Of Isca (mercury Derivative) Leng		2e-11
1s98_A	107	E.Coli Isca Crystal Structure To 2.3 A Length = 107		2e-11
2d2a_A	145	Crystal Structure Of Escherichia Coli Sufa Involved		2e-08
1x0g_A	112	Crystal Structure Of Isca With The [2fe-2s] Cluster		1e-07

>pdb|2APN|A Chain A, Hi1723 Solution Structure Length = 114

Iteration: 1
 Score =  122 bits (307), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 55/107 (51%), Positives = 71/107 (66%)
Query: 9   ISITLTEVAIKKVSHXXXXXXXXXXXXRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNG 68
           + +T T+ A  KV              RV+I GGGCSGFQYGF FDE  N  D+  +K+G
Sbjct: 7   VPLTFTDAAANKVKSLISEEENTDLKLRVYITGGGCSGFQYGFTFDEKVNDGDLTIEKSG 66
Query: 69  IQLLIDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNAVTTCGCGSSFS 115
           +QL+ID +S QYLIG  +DY + L+GS+F + NPNA +TCGCGSSFS
Sbjct: 67  VQLVIDPMSLQYLIGGTVDYTEGLEGSRFTVNNPNATSTCGCGSSFS 113

>pdb|1NWB|A Chain A, Solution Nmr Structure Of Protein Aq_1857 From Aquifex Aeolicus: Northeast Structural Genomics Consortium Target Qr6 Length = 124

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 62/103 (60%)
Query: 13  LTEVAIKKVSHXXXXXXXXXXXXRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGIQLL 72
           +T+ A++++              R+ +  GGCSGFQY   FD+   + D +F+ +G++++
Sbjct: 12  VTDKAVEEIKKVAQENNIENPILRIRVVPGGCSGFQYAMGFDDTVEEGDHVFEYDGVKVV 71
Query: 73  IDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNAVTTCGCGSSFS 115
           ID  S  Y+ G+E+DY  D  G  F I+NPNA  +CGCGSSFS
Sbjct: 72  IDPFSMPYVNGAELDYVVDFMGGGFTIRNPNATGSCGCGSSFS 114

>pdb|1R94|A Chain A, Crystal Structure Of Isca (mercury Derivative) Length = 118

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 1/106 (0%)
Query: 9   ISITLTEVAIKKVSHXXXXXXXXXXXXRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNG 68
           +SITL++ A  +V +            R+ ++  GCSG  Y   F +    +DI+F+  G
Sbjct: 1   MSITLSDSAAARV-NTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKG 59
Query: 69  IQLLIDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNAVTTCGCGSSF 114
           +++++D  S Q+L G+++D+  +     F   NPN    CGCG SF
Sbjct: 60  VKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105

>pdb|1S98|A Chain A, E.Coli Isca Crystal Structure To 2.3 A Length = 107

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 1/106 (0%)
Query: 9   ISITLTEVAIKKVSHXXXXXXXXXXXXRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNG 68
           +SITL++ A  +V +            R+ ++  GCSG  Y   F +    +DI+F+  G
Sbjct: 1   MSITLSDSAAARV-NTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKG 59
Query: 69  IQLLIDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNAVTTCGCGSSF 114
           +++++D  S Q+L G+++D+  +     F   NPN    CGCG SF
Sbjct: 60  VKVVVDGKSMQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105

>pdb|2D2A|A Chain A, Crystal Structure Of Escherichia Coli Sufa Involved In Biosynthesis Of Iron-Sulfur Clusters Length = 145

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 43/79 (54%)
Query: 36  RVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGIQLLIDSVSYQYLIGSEIDYKDDLDGS 95
           R+ ++  GC+GF Y        +KDD++F+ +G +L +   +  ++ G+E+D+  +    
Sbjct: 65  RLGVKQTGCAGFGYVLDSVSEPDKDDLLFEHDGAKLFVPLQAMPFIDGTEVDFVREGLNQ 124
Query: 96  KFVIKNPNAVTTCGCGSSF 114
            F   NP A   CGCG SF
Sbjct: 125 IFKFHNPKAQNECGCGESF 143

>pdb|1X0G|A Chain A, Crystal Structure Of Isca With The [2fe-2s] Cluster Length = 112

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 2/110 (1%)
Query: 11  ITLTEVAIKKVSHXXX--XXXXXXXXXRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNG 68
           + LT  AI+++                R+ +Q   C  ++Y           D++ +  G
Sbjct: 2   VELTPAAIQELERLQTHGVRRGQAAILRIQVQPSECGDWRYDLALVAEPKPTDLLTQSQG 61
Query: 69  IQLLIDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNAVTTCGCGSSFSTYK 118
             + I + + + L G  +DY +DL G  F   NPNA  TCGCG +F   +
Sbjct: 62  WTIAIAAEAAELLRGLRVDYIEDLMGGAFRFHNPNASQTCGCGMAFRVSR 111

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	118
1nwb_A	124	Hypothetical protein AQ_1857; QR6, structural geno	4e-61
2apn_A	114	Protein HI1723; HI1723 solution structure, structu	2e-60
1x0g_A	112	ISCA; [2Fe-2S], biosynthesis, cyanobacteria, domai	3e-52
2d2a_A	145	SUFA protein; iron-sulfur cluster, iron, ISCA, YAD	2e-44
1r94_A	118	Protein YFHF; tetrameric, beta barrel, iron-sulfur	1e-43
2k4z_A	125	DSRR; ISCA/SUFA/HESB like fold, structural genomic	6e-41

>1nwb_A Hypothetical protein AQ_1857; QR6, structural genomics, protein structure initiative, NESG, reduced dimensionality PSI; NMR {Aquifex aeolicus} SCOP: b.124.1.1 Length = 124

 Score =  182 bits (463), Expect = 4e-61
 Identities = 45/116 (38%), Positives = 71/116 (61%), Gaps = 1/116 (0%)

Query: 1   MNENVKNNISITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKD 60
           M E  +  I   +T+ A++++  + ++    N  LR+ +  GGCSGFQY   FD+   + 
Sbjct: 1   MQEQAQQFI-FKVTDKAVEEIKKVAQENNIENPILRIRVVPGGCSGFQYAMGFDDTVEEG 59

Query: 61  DIIFKKNGIQLLIDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNAVTTCGCGSSFST 116
           D +F+ +G++++ID  S  Y+ G+E+DY  D  G  F I+NPNA  +CGCGSSFS 
Sbjct: 60  DHVFEYDGVKVVIDPFSMPYVNGAELDYVVDFMGGGFTIRNPNATGSCGCGSSFSC 115

>2apn_A Protein HI1723; HI1723 solution structure, structural genomics, structure 2 function project, S2F, unknown function; NMR {Haemophilus influenzae} Length = 114

 Score =  179 bits (457), Expect = 2e-60
 Identities = 62/115 (53%), Positives = 84/115 (73%), Gaps = 2/115 (1%)

Query: 1   MNENVKNNISITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKD 60
           M +++   + +T T+ A  KV  LI ++ N +LKLRV+I GGGCSGFQYGF FDE  N  
Sbjct: 1   MIDDM--AVPLTFTDAAANKVKSLISEEENTDLKLRVYITGGGCSGFQYGFTFDEKVNDG 58

Query: 61  DIIFKKNGIQLLIDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNAVTTCGCGSSFS 115
           D+  +K+G+QL+ID +S QYLIG  +DY + L+GS+F + NPNA +TCGCGSSFS
Sbjct: 59  DLTIEKSGVQLVIDPMSLQYLIGGTVDYTEGLEGSRFTVNNPNATSTCGCGSSFS 113

>1x0g_A ISCA; [2Fe-2S], biosynthesis, cyanobacteria, domain swapping, Fe- S cluster, iron, iron-sulfur cluster protein, scaffold, sulfur; 2.50A {Thermosynechococcus elongatus} Length = 112

 Score =  158 bits (403), Expect = 3e-52
 Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 2/108 (1%)

Query: 11  ITLTEVAIKKVSHLIKKKG--NLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNG 68
           + LT  AI+++  L            LR+ +Q   C  ++Y           D++ +  G
Sbjct: 2   VELTPAAIQELERLQTHGVRRGQAAILRIQVQPSECGDWRYDLALVAEPKPTDLLTQSQG 61

Query: 69  IQLLIDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNAVTTCGCGSSFST 116
             + I + + + L G  +DY +DL G  F   NPNA  TCGCG +F  
Sbjct: 62  WTIAIAAEAAELLRGLRVDYIEDLMGGAFRFHNPNASQTCGCGMAFRV 109

>2d2a_A SUFA protein; iron-sulfur cluster, iron, ISCA, YADR, metal transport; 2.70A {Escherichia coli} Length = 145

 Score =  140 bits (355), Expect = 2e-44
 Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 1/105 (0%)

Query: 11  ITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGIQ 70
           +TLT  A   +  L+ K+    + +R+ ++  GC+GF Y        +KDD++F+ +G +
Sbjct: 41  LTLTPAAAIHIRELVAKQPG-MVGVRLGVKQTGCAGFGYVLDSVSEPDKDDLLFEHDGAK 99

Query: 71  LLIDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNAVTTCGCGSSFS 115
           L +   +  ++ G+E+D+  +     F   NP A   CGCG SF 
Sbjct: 100 LFVPLQAMPFIDGTEVDFVREGLNQIFKFHNPKAQNECGCGESFG 144

>1r94_A Protein YFHF; tetrameric, beta barrel, iron-sulfur cluster protein, pseudo-symmetric motifs, metal transport; 2.30A {Escherichia coli} SCOP: b.124.1.1 PDB: 1r95_A 1s98_A Length = 118

 Score =  137 bits (347), Expect = 1e-43
 Identities = 35/107 (32%), Positives = 59/107 (55%), Gaps = 1/107 (0%)

Query: 10  SITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGI 69
           SITL++ A  +V+  +  +G     LR+ ++  GCSG  Y   F +    +DI+F+  G+
Sbjct: 2   SITLSDSAAARVNTFLANRGK-GFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGV 60

Query: 70  QLLIDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNAVTTCGCGSSFST 116
           ++++D  S Q+L G+++D+  +     F   NPN    CGCG SF  
Sbjct: 61  KVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESFKL 107

>2k4z_A DSRR; ISCA/SUFA/HESB like fold, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Allochromatium vinosum} Length = 125

 Score =  130 bits (330), Expect = 6e-41
 Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 2/95 (2%)

Query: 11  ITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGIQ 70
             LT  A ++V    K+ G   + LR+           Y   FD+   +DDI     G++
Sbjct: 23  FKLTPAAAEQVLKAAKQGGTEGMCLRLAAGRNPDGSIDYRMGFDD-LTEDDIRLTSEGVE 81

Query: 71  LLIDSVSYQYLIGSEIDYKDDLDGSK-FVIKNPNA 104
           ++I       L  + +DY +   G   F+  NP  
Sbjct: 82  IVIAPDYVSLLDQTTLDYVELEPGQFHFIFLNPRD 116

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	118
1r94_A	118	Protein YFHF; tetrameric, beta barrel, iron-sulfur	100.0
1nwb_A	124	Hypothetical protein AQ_1857; QR6, structural geno	100.0
1x0g_A	112	ISCA; [2Fe-2S], biosynthesis, cyanobacteria, domai	100.0
2apn_A	114	Protein HI1723; HI1723 solution structure, structu	100.0
2d2a_A	145	SUFA protein; iron-sulfur cluster, iron, ISCA, YAD	100.0
2k4z_A	125	DSRR; ISCA/SUFA/HESB like fold, structural genomic	99.97
2p2e_A	128	Putative Fe-S biosynthesis protein; hypothetical p	99.9
2qgo_A	141	Putative Fe-S biosynthesis protein; PSI-2, NYSGXRC	99.87

>1r94_A Protein YFHF; tetrameric, beta barrel, iron-sulfur cluster protein, pseudo-symmetric motifs, metal transport; 2.30A {Escherichia coli} SCOP: b.124.1.1 PDB: 1r95_A 1s98_A

Probab=100.00  E-value=2.1e-42  Score=229.96  Aligned_cols=109  Identities=32%  Similarity=0.686  Sum_probs=92.5

Q ss_pred             cceeeCHHHHHHHHHHHHhcCCCCccEEEEEeCCCCCCeEEEEEEccCCCCCCeEEEeCCEEEEEcccchhhccCcEEEE
Q psy9411           9 ISITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGIQLLIDSVSYQYLIGSEIDY   88 (118)
Q Consensus         9 ~~I~IT~~A~~~l~~~~~~~~~~~~~lRi~v~~~GC~G~~~~l~~~~~~~~~D~v~~~~gi~v~id~~~~~~l~g~~IDy   88 (118)
                      |+|+|||+|+++|+++++.++. +.+|||+|+++||+|++|+|.+++++.++|.+++.+|++|+||+.+++||+|++|||
T Consensus         1 M~I~iT~~A~~~l~~ll~~~~~-~~~LRv~V~~gGCsG~~y~l~~~~~~~~~D~v~e~~Gv~v~vd~~s~~~L~g~~IDy   79 (118)
T 1r94_A            1 MSITLSDSAAARVNTFLANRGK-GFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDF   79 (118)
T ss_dssp             CCCEECHHHHHHHHHHHHHHCC-CSEEEEEEEECSSSCEEEEEEEESSCCTTEEEEEETTEEEEEEGGGHHHHTTCEEEE
T ss_pred             CceEECHHHHHHHHHHHhhCCC-CceEEEEEECCCCCCeEEEEEEccCCCCCceEEEECCEEEEEEHHHHHHhCCCEEEE
Confidence            7899999999999999988754 578999999999999999999987789999999999999999999999999999999


Q ss_pred             EeCCCCceEEEecCCCCCCCCCCCCCCcCC
Q psy9411          89 KDDLDGSKFVIKNPNAVTTCGCGSSFSTYK  118 (118)
Q Consensus        89 ~~~~~~~gF~i~~p~~~~~CgCG~sf~~~~  118 (118)
                      .++..+++|+|.|||++.+||||+||++++
T Consensus        80 ~~~~~g~gF~~~NPna~~~CgCG~SF~~~~  109 (118)
T 1r94_A           80 VKEGLNEGFKFTNPNVKDECGCGESFKLAA  109 (118)
T ss_dssp             EEETTEEEEEEECTTCCC------------
T ss_pred             EcCCCcCceEEeCCCCCCCCCCCCCcCCCC
Confidence            999999999999999999999999999863

>1nwb_A Hypothetical protein AQ_1857; QR6, structural genomics, protein structure initiative, NESG, reduced dimensionality PSI; NMR {Aquifex aeolicus} SCOP: b.124.1.1

Probab=100.00  E-value=1.1e-42  Score=233.13  Aligned_cols=112  Identities=38%  Similarity=0.729  Sum_probs=90.7

Q ss_pred             CCcceeeCHHHHHHHHHHHHhcCCCCccEEEEEeCCCCCCeEEEEEEccCCCCCCeEEEeCCEEEEEcccchhhccCcEE
Q psy9411           7 NNISITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGIQLLIDSVSYQYLIGSEI   86 (118)
Q Consensus         7 ~~~~I~IT~~A~~~l~~~~~~~~~~~~~lRi~v~~~GC~G~~~~l~~~~~~~~~D~v~~~~gi~v~id~~~~~~l~g~~I   86 (118)
                      .+|+|+|||+|+++|+++++.++.++.+|||+|+++||+|++|+|.+++++.++|.+++.+|++|+||+.+++||+|++|
T Consensus         6 ~~m~I~iT~~A~~~l~~ll~~~~~~~~~LRv~V~~gGCsG~~y~l~~~~~~~~~D~v~e~~Gv~v~VD~~s~~~L~G~~I   85 (124)
T 1nwb_A            6 QQFIFKVTDKAVEEIKKVAQENNIENPILRIRVVPGGCSGFQYAMGFDDTVEEGDHVFEYDGVKVVIDPFSMPYVNGAEL   85 (124)
T ss_dssp             CCCCCEECHHHHHHHHHHHHTTTCSSCEEEECCCCCCTTCCCCCCCEECSCCSSCCCCCCSSSEEEECTTTGGGSTTCEE
T ss_pred             cCceEEECHHHHHHHHHHHhhCCCCCceEEEEEEcCCCCCcEEEEEEccCCCCCceEEEeCCEEEEEehHHHHHhCCCEE
Confidence            35899999999999999999877556789999999999999999999987789999999999999999999999999999


Q ss_pred             EEEeCCCCceEEEecCCCCCCCCCCCCCCcCC
Q psy9411          87 DYKDDLDGSKFVIKNPNAVTTCGCGSSFSTYK  118 (118)
Q Consensus        87 Dy~~~~~~~gF~i~~p~~~~~CgCG~sf~~~~  118 (118)
                      ||.+++.+++|+|.|||++.+||||+||++++
T Consensus        86 Dy~~~~~g~gF~~~NPna~~~CgCG~SF~~~~  117 (124)
T 1nwb_A           86 DYVVDFMGGGFTIRNPNATGSCGCGSSFSCGL  117 (124)
T ss_dssp             EEEEETTEEEEEEECC----------------
T ss_pred             EEEcCCCcceEEEeCCCCCcCCCCCCCcCCCc
Confidence            99999999999999999999999999999863

>1x0g_A ISCA; [2Fe-2S], biosynthesis, cyanobacteria, domain swapping, Fe- S cluster, iron, iron-sulfur cluster protein, scaffold, sulfur; 2.50A {Thermosynechococcus elongatus}

Probab=100.00  E-value=2e-42  Score=228.13  Aligned_cols=109  Identities=28%  Similarity=0.539  Sum_probs=97.8

Q ss_pred             ceeeCHHHHHHHHHHHHhc-CCC-CccEEEEEeCCCCCCeEEEEEEccCCCCCCeEEEeCCEEEEEcccchhhccCcEEE
Q psy9411          10 SITLTEVAIKKVSHLIKKK-GNL-NLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGIQLLIDSVSYQYLIGSEID   87 (118)
Q Consensus        10 ~I~IT~~A~~~l~~~~~~~-~~~-~~~lRi~v~~~GC~G~~~~l~~~~~~~~~D~v~~~~gi~v~id~~~~~~l~g~~ID   87 (118)
                      ||+|||+|+++|+++++.+ +.+ +.+|||+|+++||+|++|+|.+++++.++|.+++.+|++|+||+.+++||+|++||
T Consensus         1 mi~iT~~A~~~l~~ll~~~~~~~~~~~lRv~v~~gGCsG~~y~l~~~~~~~~~D~v~e~~Gv~v~vd~~s~~~l~g~~ID   80 (112)
T 1x0g_A            1 MVELTPAAIQELERLQTHGVRRGQAAILRIQVQPSECGDWRYDLALVAEPKPTDLLTQSQGWTIAIAAEAAELLRGLRVD   80 (112)
T ss_dssp             CCEECHHHHHHTCCCC----------CEEEEEEEBSSSSEEEEEEECSSCCTTCEEECSSSCCEEECGGGHHHHTTCEEE
T ss_pred             CeEECHHHHHHHHHHHhhccCCCCceEEEEEEEcCCCCCeEEEEEECcCCCCCCEEEEeCCEEEEEeHHHHHHhCCCEEE
Confidence            6999999999999999877 544 56899999999999999999999877899999999999999999999999999999


Q ss_pred             EEeCCCCceEEEecCCCCCCCCCCCCCCcCC
Q psy9411          88 YKDDLDGSKFVIKNPNAVTTCGCGSSFSTYK  118 (118)
Q Consensus        88 y~~~~~~~gF~i~~p~~~~~CgCG~sf~~~~  118 (118)
                      |.++..+++|+|+|||++.+||||+||++++
T Consensus        81 y~~~~~g~gF~~~nPna~~~CgCG~SF~~~~  111 (112)
T 1x0g_A           81 YIEDLMGGAFRFHNPNASQTCGCGMAFRVSR  111 (112)
T ss_dssp             EEEETTEEEEEEECTTCSEECSSSSEEECCC
T ss_pred             EEecCCCCEEEEeCCCCCcCCCCCCccccCC
Confidence            9999999999999999999999999999875

>2apn_A Protein HI1723; HI1723 solution structure, structural genomics, structure 2 function project, S2F, unknown function; NMR {Haemophilus influenzae}

Probab=100.00  E-value=1.5e-41  Score=224.51  Aligned_cols=110  Identities=55%  Similarity=1.042  Sum_probs=103.4

Q ss_pred             CCcceeeCHHHHHHHHHHHHhcCCCCccEEEEEeCCCCCCeEEEEEEccCCCCCCeEEEeCCEEEEEcccchhhccCcEE
Q psy9411           7 NNISITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGIQLLIDSVSYQYLIGSEI   86 (118)
Q Consensus         7 ~~~~I~IT~~A~~~l~~~~~~~~~~~~~lRi~v~~~GC~G~~~~l~~~~~~~~~D~v~~~~gi~v~id~~~~~~l~g~~I   86 (118)
                      ++|+|+|||+|+++|+++++.++.++.+|||+|+++||+|++|.|.+++++.++|.+++.+|++|+||+.+++||+|++|
T Consensus         5 ~~~~i~iT~~A~~~i~~l~~~~~~~~~~lRi~v~~gGCsG~~y~l~~~~~~~~~D~v~e~~Gv~v~id~~s~~~l~g~~I   84 (114)
T 2apn_A            5 MAVPLTFTDAAANKVKSLISEEENTDLKLRVYITGGGCSGFQYGFTFDEKVNDGDLTIEKSGVQLVIDPMSLQYLIGGTV   84 (114)
T ss_dssp             SCCSCEECSHHHHHHHHHHHHHTCSSCEEEECCCCSSSSCSCCCEEECCSCCSSCEEEECSSSEEEECHHHHHHHTTCEE
T ss_pred             CcCcEEECHHHHHHHHHHHHhCCCCCceEEEEEeCCCCCCcEEEEEECcCCCCCCcEEEECCEEEEEehHHHHHhCCCEE
Confidence            34789999999999999998876556789999999999999999999987779999999999999999999999999999


Q ss_pred             EEEeCCCCceEEEecCCCCCCCCCCCCCCc
Q psy9411          87 DYKDDLDGSKFVIKNPNAVTTCGCGSSFST  116 (118)
Q Consensus        87 Dy~~~~~~~gF~i~~p~~~~~CgCG~sf~~  116 (118)
                      ||.++..+++|+|+|||++.+||||+||++
T Consensus        85 Dy~~~~~g~~F~~~nPna~~~CgCG~SF~~  114 (114)
T 2apn_A           85 DYTEGLEGSRFTVNNPNATSTCGCGSSFSI  114 (114)
T ss_dssp             EEECSSSCCEEEEECHHHHCCCCCCCCSCC
T ss_pred             EEEcCCCcceEEEeCCCCCcCCCCCCCccC
Confidence            999999999999999999999999999985

>2d2a_A SUFA protein; iron-sulfur cluster, iron, ISCA, YADR, metal transport; 2.70A {Escherichia coli}

Probab=100.00  E-value=1.8e-40  Score=227.52  Aligned_cols=108  Identities=29%  Similarity=0.570  Sum_probs=102.4

Q ss_pred             CcceeeCHHHHHHHHHHHHhcCCCCccEEEEEeCCCCCCeEEEEEEccCCCCCCeEEEeCCEEEEEcccchhhccCcEEE
Q psy9411           8 NISITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGIQLLIDSVSYQYLIGSEID   87 (118)
Q Consensus         8 ~~~I~IT~~A~~~l~~~~~~~~~~~~~lRi~v~~~GC~G~~~~l~~~~~~~~~D~v~~~~gi~v~id~~~~~~l~g~~ID   87 (118)
                      +|.|+|||+|+++|++++++++. +.+|||+|+++||+|++|+|.++++++++|.+++.+|++|+||+.+++||+|++||
T Consensus        38 ~m~ItiTe~Aa~~lk~ll~~~~~-~~~LRv~V~~gGCsG~~Y~l~l~~~~~~~D~v~e~~Gv~v~VD~~s~~~L~G~~ID  116 (145)
T 2d2a_A           38 WQGLTLTPAAAIHIRELVAKQPG-MVGVRLGVKQTGCAGFGYVLDSVSEPDKDDLLFEHDGAKLFVPLQAMPFIDGTEVD  116 (145)
T ss_dssp             CCCCEECHHHHHHHHHHHHHSTT-CCEEEEEEEEETTTEEEEEEEEESSCCTTEEEEEETTEEEEEEGGGHHHHTTCEEE
T ss_pred             cceEEECHHHHHHHHHHHhcCCC-CceEEEEEECCCCCCcEEEEEECcCCCCCCeEEEECCEEEEEeHHHHHhhCCCEEE
Confidence            58899999999999999988753 57899999999999999999999878899999999999999999999999999999


Q ss_pred             EEeCCCCceEEEecCCCCCCCCCCCCCCc
Q psy9411          88 YKDDLDGSKFVIKNPNAVTTCGCGSSFST  116 (118)
Q Consensus        88 y~~~~~~~gF~i~~p~~~~~CgCG~sf~~  116 (118)
                      |.++..+++|+|+|||++.+||||+||++
T Consensus       117 y~e~l~g~gF~f~NPna~~~CGCG~SF~v  145 (145)
T 2d2a_A          117 FVREGLNQIFKFHNPKAQNECGCGESFGV  145 (145)
T ss_dssp             EEEETTEEEEEEECTTTCSCCCCBCEEEC
T ss_pred             EEcCCCcceEEEeCCCCCcccCCCCCccC
Confidence            99999999999999999999999999974

>2k4z_A DSRR; ISCA/SUFA/HESB like fold, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Allochromatium vinosum}

Probab=99.97  E-value=1.2e-30  Score=174.89  Aligned_cols=101  Identities=24%  Similarity=0.374  Sum_probs=94.0

Q ss_pred             CCCcceeeCHHHHHHHHHHHHhcCCCCccEEEEEe--CCCCCCeEEEEEEccCCCCCCeEEEeCCEEEEEcccchhhccC
Q psy9411           6 KNNISITLTEVAIKKVSHLIKKKGNLNLKLRVFIQ--GGGCSGFQYGFMFDEHTNKDDIIFKKNGIQLLIDSVSYQYLIG   83 (118)
Q Consensus         6 ~~~~~I~IT~~A~~~l~~~~~~~~~~~~~lRi~v~--~~GC~G~~~~l~~~~~~~~~D~v~~~~gi~v~id~~~~~~l~g   83 (118)
                      ..+|+|+||++|+++|++++++++.++.+|||+|+  ++|  |++|+|.++++ .++|.+++.+|++|+||+.+++||+|
T Consensus        18 ~~~m~ItiT~~Aa~~ik~ll~~~~~~~~~LRv~V~~~~gG--G~~Y~l~l~~~-~~~D~v~e~~Gv~v~VD~~s~~~L~G   94 (125)
T 2k4z_A           18 GSHMMFKLTPAAAEQVLKAAKQGGTEGMCLRLAAGRNPDG--SIDYRMGFDDL-TEDDIRLTSEGVEIVIAPDYVSLLDQ   94 (125)
T ss_dssp             CCSSCEEECHHHHHHHHHHHHHSSSTTCEEEEEEEECTTS--CEEEEEEEECC-CSSSCEEECSSCEEECCTTTHHHHTT
T ss_pred             CCCCEEEECHHHHHHHHHHHhhCCCCCceEEEEEEecCCC--CEEEEEEecCC-CCCceEEEECCEEEEEeHHHHHhhCC
Confidence            45799999999999999999988655578999999  888  99999999987 89999999999999999999999999


Q ss_pred             cEEEEEe-CCCCceEEEecCCCCCCCC
Q psy9411          84 SEIDYKD-DLDGSKFVIKNPNAVTTCG  109 (118)
Q Consensus        84 ~~IDy~~-~~~~~gF~i~~p~~~~~Cg  109 (118)
                      ++|||.+ +..+++|+|+|||+++.|.
T Consensus        95 ~~IDy~~~~l~g~gF~~~NPna~~~~p  121 (125)
T 2k4z_A           95 TTLDYVELEPGQFHFIFLNPRDPTYRP  121 (125)
T ss_dssp             EEEEEEEEETTEEEEEEECSSSCSSCC
T ss_pred             CEEEEEeCCCCcCeEEECCCCCCccCC
Confidence            9999999 9999999999999998874

>2p2e_A Putative Fe-S biosynthesis protein; hypothetical protein, beta-barrel, 10399L structural genomics, protein structure initiative, PSI-2; 2.48A {Lactobacillus salivarius} SCOP: b.124.1.1

Probab=99.90  E-value=2.2e-24  Score=144.85  Aligned_cols=98  Identities=16%  Similarity=0.108  Sum_probs=86.3

Q ss_pred             CCcceeeCHHHHHHHHHHHHhcCCCCccEEEEEeCC-------CCCC-eEEEEEEccCCCC----CCeEEEeCCEEEEEc
Q psy9411           7 NNISITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGG-------GCSG-FQYGFMFDEHTNK----DDIIFKKNGIQLLID   74 (118)
Q Consensus         7 ~~~~I~IT~~A~~~l~~~~~~~~~~~~~lRi~v~~~-------GC~G-~~~~l~~~~~~~~----~D~v~~~~gi~v~id   74 (118)
                      |.|.|+||++|+++|+++++.++. ...||+. +++       ||+| ..|.|.+++++.+    .|.+++.++++|+||
T Consensus         1 ~~M~ItlT~~A~~~l~~~l~~~~~-~l~Lr~~-dg~g~y~k~ggCsg~~~Y~l~~v~~~~~~~~~~D~~~e~~g~~v~vd   78 (128)
T 2p2e_A            1 MSLKITVTDDAAKKLQRYTDDSNA-VLLLDFD-DGVGALSKVGVCSLNSDFRILVVSKDMDYKKDYNEVIDSNIGKFYYK   78 (128)
T ss_dssp             --CEEEECHHHHHHHHHHHTCTTE-EEEEEEC-SSCSGGGGSSCCCCSCCEEEEEEETTSSCTTTSCEEEEETTSCEEEC
T ss_pred             CccEEEECHHHHHHHHHHHhcCCc-eEEEEEe-CCCCccccCCCCCCCCEEEEEEeccCCCCCCCCCEEEEeCCEEEEEC
Confidence            358899999999999999987753 3689999 666       7999 5999999887777    899999999999999


Q ss_pred             ccchhhccC-cEEEEEeCC----CCce-EEEecCCCCC
Q psy9411          75 SVSYQYLIG-SEIDYKDDL----DGSK-FVIKNPNAVT  106 (118)
Q Consensus        75 ~~~~~~l~g-~~IDy~~~~----~~~g-F~i~~p~~~~  106 (118)
                      +.++.||+| ++|||.++.    .+++ |.|.|||++.
T Consensus        79 ~~s~~~ldgg~~iDy~~~~~~l~L~s~~f~~~NPN~~~  116 (128)
T 2p2e_A           79 GYSKMYMDDNMKISLNTNNSLLRLTGDNSGELMPALSI  116 (128)
T ss_dssp             GGGGGGSCSEEEEEECSSSSCEEEEETTTEEEEEEECE
T ss_pred             cchHHhhCCCeEEEEeCCCceEEecCCccEEECCCCee
Confidence            999999996 999999998    7889 9999999853

>2qgo_A Putative Fe-S biosynthesis protein; PSI-2, NYSGXRC, 10399G, Fe-S cluster protein, structural GEN protein structure initiative; 2.04A {Lactobacillus acidophilus}

Probab=99.87  E-value=3.6e-23  Score=140.92  Aligned_cols=92  Identities=17%  Similarity=0.342  Sum_probs=74.6

Q ss_pred             CCcceeeCHHHHHHHHHHHHhcCCCCccE-------EEEEeCCCCC-CeEEEEEEccCCCCC-CeEEEeC-CEEEEEccc
Q psy9411           7 NNISITLTEVAIKKVSHLIKKKGNLNLKL-------RVFIQGGGCS-GFQYGFMFDEHTNKD-DIIFKKN-GIQLLIDSV   76 (118)
Q Consensus         7 ~~~~I~IT~~A~~~l~~~~~~~~~~~~~l-------Ri~v~~~GC~-G~~~~l~~~~~~~~~-D~v~~~~-gi~v~id~~   76 (118)
                      .+|.|+||++|+++|+++++.++  ...|       |+.+.++||+ |++|.|.+++++.++ |.+++.+ |++|+||+.
T Consensus         2 ~~M~ItlTd~Aa~~ik~~l~~~~--~l~L~~~Dgv~r~~v~gGGCSiG~~Y~l~~~~e~~~dyD~~~e~~gGv~v~Vd~~   79 (141)
T 2qgo_A            2 SLLNIKFTDNAVDYLKRREILDK--ILILITDDGGGKYSIQGGSCSMGAHFSIIWLDKVDPDYPVKIANEQNVKIYTSDF   79 (141)
T ss_dssp             --CBEEECHHHHHHHHHTTCTTS--EEEEEECSSCSTTCC---------CEEEEEESSCCTTCCEECBCSSCCEEEECHH
T ss_pred             cceEEEECHHHHHHHHHHHhhcc--ceeeecCCCceEEEEeCccCCCCCEEEEEEeecCCCCCCEEEEeCCCEEEEECch
Confidence            35889999999999999998764  5789       9999999999 999999999888889 9999999 599999999


Q ss_pred             chhhcc-CcEEEEEeCCCCceEEEecCCC
Q psy9411          77 SYQYLI-GSEIDYKDDLDGSKFVIKNPNA  104 (118)
Q Consensus        77 ~~~~l~-g~~IDy~~~~~~~gF~i~~p~~  104 (118)
                      +++||+ |++|||.++    .|.+++|..
T Consensus        80 sl~yLd~G~~IDy~~~----~l~Lks~sg  104 (141)
T 2qgo_A           80 DKTMLGPNMVMDYNAG----SLSLSSDEG  104 (141)
T ss_dssp             HHTTSCSSEEEEEETT----EEEEEETTE
T ss_pred             HHHHhcCCCEEeEECC----EEEEcCCCc
Confidence            999999 999999964    799988764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	118
d1nwba_	101	b.124.1.1 (A:) Hypothetical protein Aq_1857 {Aquif	2e-27
d1s98a_	97	b.124.1.1 (A:) Fe-S scaffold protein IscA (YfhF) {	1e-26

>d1nwba_ b.124.1.1 (A:) Hypothetical protein Aq_1857 {Aquifex aeolicus [TaxId: 63363]} Length = 101

class: All beta proteins
fold: HesB-like domain
superfamily: HesB-like domain
family: HesB-like domain
domain: Hypothetical protein Aq 1857
species: Aquifex aeolicus [TaxId: 63363]

 Score = 95.2 bits (236), Expect = 2e-27
 Identities = 35/102 (34%), Positives = 60/102 (58%), Gaps = 1/102 (0%)

Query: 1   MNENVKNNISITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKD 60
           M E  +  I   +T+ A++++  + ++    N  LR+ +  GGCSGFQY   FD+   + 
Sbjct: 1   MQEQAQQFI-FKVTDKAVEEIKKVAQENNIENPILRIRVVPGGCSGFQYAMGFDDTVEEG 59

Query: 61  DIIFKKNGIQLLIDSVSYQYLIGSEIDYKDDLDGSKFVIKNP 102
           D +F+ +G++++ID  S  Y+ G+E+DY  D  G  F I+NP
Sbjct: 60  DHVFEYDGVKVVIDPFSMPYVNGAELDYVVDFMGGGFTIRNP 101

>d1s98a_ b.124.1.1 (A:) Fe-S scaffold protein IscA (YfhF) {Escherichia coli [TaxId: 562]} Length = 97

class: All beta proteins
fold: HesB-like domain
superfamily: HesB-like domain
family: HesB-like domain
domain: Fe-S scaffold protein IscA (YfhF)
species: Escherichia coli [TaxId: 562]

 Score = 92.7 bits (230), Expect = 1e-26
 Identities = 29/95 (30%), Positives = 53/95 (55%), Gaps = 1/95 (1%)

Query: 10  SITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGI 69
           SITL++ A  +V+  +  +G     LR+ ++  GCSG  Y   F +    +DI+F+  G+
Sbjct: 1   SITLSDSAAARVNTFLANRGK-GFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGV 59

Query: 70  QLLIDSVSYQYLIGSEIDYKDDLDGSKFVIKNPNA 104
           ++++D  S Q+L G+++D+  +     F   NPN 
Sbjct: 60  KVVVDGKSMQFLDGTQLDFVKEGLNEGFKFTNPNV 94

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	118
d1s98a_	97	Fe-S scaffold protein IscA (YfhF) {Escherichia col	99.97
d1nwba_	101	Hypothetical protein Aq_1857 {Aquifex aeolicus [Ta	99.97
d2p2ea1	118	Putative Fe-S biosynthesis protein LSL1730 {Lactob	99.36

>d1s98a_ b.124.1.1 (A:) Fe-S scaffold protein IscA (YfhF) {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: HesB-like domain
superfamily: HesB-like domain
family: HesB-like domain
domain: Fe-S scaffold protein IscA (YfhF)
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=7.9e-32  Score=171.86  Aligned_cols=96  Identities=30%  Similarity=0.625  Sum_probs=90.6

Q ss_pred             ceeeCHHHHHHHHHHHHhcCCCCccEEEEEeCCCCCCeEEEEEEccCCCCCCeEEEeCCEEEEEcccchhhccCcEEEEE
Q psy9411          10 SITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGIQLLIDSVSYQYLIGSEIDYK   89 (118)
Q Consensus        10 ~I~IT~~A~~~l~~~~~~~~~~~~~lRi~v~~~GC~G~~~~l~~~~~~~~~D~v~~~~gi~v~id~~~~~~l~g~~IDy~   89 (118)
                      .|+|||+|+++|+++++.++. +.+|||.|+++||+|++|.|.+++++.++|.+++.+|++|+||+.+..||+|++|||.
T Consensus         1 ~I~iT~~A~~~i~~ll~~~~~-~~~lRi~v~~gGCsG~~Y~l~~~~~~~~~D~~~~~~g~~i~id~~s~~~L~G~~IDy~   79 (97)
T d1s98a_           1 SITLSDSAAARVNTFLANRGK-GFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSMQFLDGTQLDFV   79 (97)
T ss_dssp             CCEECHHHHHHHHHHHHTTCC-CCEEEEEEEEETTTEEEEEEEEESSCCTTEEEEEETTEEEEEEGGGHHHHTTCEEEEE
T ss_pred             CEEECHHHHHHHHHHHHhCCC-CcEEEEEEEcCCCCcceEEeeecccCCCCcEEEEcCCCEEEEeHHHHHHhCCCEEEEe
Confidence            489999999999999998764 5789999999999999999999988889999999999999999999999999999999


Q ss_pred             eCCCCceEEEecCCCCC
Q psy9411          90 DDLDGSKFVIKNPNAVT  106 (118)
Q Consensus        90 ~~~~~~gF~i~~p~~~~  106 (118)
                      ++..+++|+|.|||+++
T Consensus        80 ~~~~~~gF~f~NPNak~   96 (97)
T d1s98a_          80 KEGLNEGFKFTNPNVKD   96 (97)
T ss_dssp             CSSTTCEEEEECTTSCC
T ss_pred             ecCCcCceEEECCCCCC
Confidence            99999999999999974

>d1nwba_ b.124.1.1 (A:) Hypothetical protein Aq_1857 {Aquifex aeolicus [TaxId: 63363]}

class: All beta proteins
fold: HesB-like domain
superfamily: HesB-like domain
family: HesB-like domain
domain: Hypothetical protein Aq 1857
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.97  E-value=1.6e-31  Score=171.45  Aligned_cols=96  Identities=33%  Similarity=0.678  Sum_probs=90.5

Q ss_pred             CCcceeeCHHHHHHHHHHHHhcCCCCccEEEEEeCCCCCCeEEEEEEccCCCCCCeEEEeCCEEEEEcccchhhccCcEE
Q psy9411           7 NNISITLTEVAIKKVSHLIKKKGNLNLKLRVFIQGGGCSGFQYGFMFDEHTNKDDIIFKKNGIQLLIDSVSYQYLIGSEI   86 (118)
Q Consensus         7 ~~~~I~IT~~A~~~l~~~~~~~~~~~~~lRi~v~~~GC~G~~~~l~~~~~~~~~D~v~~~~gi~v~id~~~~~~l~g~~I   86 (118)
                      ...||+||++|+++|+++++.++.++.+|||.|+++||+|++|.|.+++++.++|.+++.+|++|+||+.++.||+|++|
T Consensus         6 ~~~mi~iT~~A~~~i~~l~~~~~~~~~~lRi~v~~gGC~G~~Y~l~~~~~~~~~D~v~~~~g~~i~id~~s~~~L~G~~I   85 (101)
T d1nwba_           6 QQFIFKVTDKAVEEIKKVAQENNIENPILRIRVVPGGCSGFQYAMGFDDTVEEGDHVFEYDGVKVVIDPFSMPYVNGAEL   85 (101)
T ss_dssp             CCCCCEECHHHHHHHHHHHHTTTCSSCEEEECCCCCCTTCCCCCCCEECSCCSSCCCCCCSSSEEEECTTTGGGSTTCEE
T ss_pred             cCCcEEECHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCceeEEEeeccccccCceEEecCCeeEEECHHHHhHhCCCEE
Confidence            34679999999999999999877667899999999999999999999987889999999999999999999999999999


Q ss_pred             EEEeCCCCceEEEecC
Q psy9411          87 DYKDDLDGSKFVIKNP  102 (118)
Q Consensus        87 Dy~~~~~~~gF~i~~p  102 (118)
                      ||.++..+++|+|.||
T Consensus        86 Dy~~~~~~~~F~f~NP  101 (101)
T d1nwba_          86 DYVVDFMGGGFTIRNP  101 (101)
T ss_dssp             EEEEETTEEEEEEECC
T ss_pred             EEeecCCCCeEEEeCc
Confidence            9999999999999998

>d2p2ea1 b.124.1.1 (A:3-120) Putative Fe-S biosynthesis protein LSL1730 {Lactobacillus salivarius [TaxId: 1624]}

class: All beta proteins
fold: HesB-like domain
superfamily: HesB-like domain
family: HesB-like domain
domain: Putative Fe-S biosynthesis protein LSL1730
species: Lactobacillus salivarius [TaxId: 1624]

Probab=99.36  E-value=5.1e-12  Score=81.78  Aligned_cols=91  Identities=18%  Similarity=0.219  Sum_probs=73.4

Q ss_pred             cceeeCHHHHHHHHHHHHhcCCCCccEEEEEe--------CCCCC-CeEEEEEEccC----CCCCCeEEEeCCEEEEEcc
Q psy9411           9 ISITLTEVAIKKVSHLIKKKGNLNLKLRVFIQ--------GGGCS-GFQYGFMFDEH----TNKDDIIFKKNGIQLLIDS   75 (118)
Q Consensus         9 ~~I~IT~~A~~~l~~~~~~~~~~~~~lRi~v~--------~~GC~-G~~~~l~~~~~----~~~~D~v~~~~gi~v~id~   75 (118)
                      |.||||++|+++|++.+...+   ..|.+.+.        ++||+ +-.|.|.+.++    ..+-|+.++.+-.++++.+
T Consensus         1 M~ItiT~~A~~~L~~~~~~~~---~~L~L~~dDG~g~yS~gggC~i~g~f~L~~v~~~~~~~~~yd~~iesn~g~i~~~~   77 (118)
T d2p2ea1           1 LKITVTDDAAKKLQRYTDDSN---AVLLLDFDDGVGALSKVGVCSLNSDFRILVVSKDMDYKKDYNEVIDSNIGKFYYKG   77 (118)
T ss_dssp             CEEEECHHHHHHHHHHHTCTT---EEEEEEECSSCSGGGGSSCCCCSCCEEEEEEETTSSCTTTSCEEEEETTSCEEECG
T ss_pred             CEEEECHHHHHHHHHhhCCCC---CEEEEEEeCCCCccccCCccccCCEEEEEEEeCCCCCCcccceeecCCCccEEEcc
Confidence            789999999999999886653   45666655        57887 55788888653    2356788999888999999


Q ss_pred             cchhhccC-cEEEEEeCCCCceEEEecCCC
Q psy9411          76 VSYQYLIG-SEIDYKDDLDGSKFVIKNPNA  104 (118)
Q Consensus        76 ~~~~~l~g-~~IDy~~~~~~~gF~i~~p~~  104 (118)
                      ....||++ ++|||.+..  ..|++++|+.
T Consensus        78 ~~~~ffd~~m~ld~~~~~--~~l~LkSd~s  105 (118)
T d2p2ea1          78 YSKMYMDDNMKISLNTNN--SLLRLTGDNS  105 (118)
T ss_dssp             GGGGGSCSEEEEEECSSS--SCEEEEETTT
T ss_pred             cchhhcCCCcEEEEcCCC--CEEEEeCCCc
Confidence            99999997 999999875  5799988864