Psyllid ID: psy9641

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-----
MSAVFEDWNKGELDSFLIEITKDILKFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSRCLSSLFDERQKASQVLQGPNPTYKGKDTTYFNFKDKGNSGSPIQPSLEWLVALREKKTPLEKMKIFASVPIE
cHHHHHHHcccccHHHHHHHHHHHHccccccccccHHHHHcccccccccHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccccccccccc
HHHHHHHHccccccEHHHHHHHHHHHcEcccccEcHHHcccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHcHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEccc
msavfedwnkgeldsFLIEITKDILKfkdtdgaplvEKIKdyagqkgtgkWTAISALDYGVPVTLIGESVFSRCLSSLFDERQKasqvlqgpnptykgkdttyfnfkdkgnsgspiqpSLEWLVALREkktplekmkifasvpie
msavfedwnkgeldsFLIEITKDILKFKDTDGAPLVEKIKdyagqkgtGKWTAISALDYGVPVTLIGESVFSRCLSSLFDERQkasqvlqgpnptykgKDTTYFNFKdkgnsgspiqPSLEWLVALRekktplekmkifasvpie
MSAVFEDWNKGELDSFLIEITKDILKFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSRCLSSLFDERQKASQVLQGPNPTYKGKDTTYFNFKDKGNSGSPIQPSLEWLVALREKKTPLEKMKIFASVPIE
****FEDWNKGELDSFLIEITKDILKFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSRCLSSLFD*********************TYFN**************LEWLVALR******************
MSAVFEDWNKGELDSFLIEITKDILKFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSRCLSSLFDE*Q*************KGKDTTYFNFKDKGNSGSPIQPSLEWLVALREKKTPLEKMKIFASVPIE
MSAVFEDWNKGELDSFLIEITKDILKFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSRCLSSLFDERQKASQVLQGPNPTYKGKDTTYFNFKDKGNSGSPIQPSLEWLVALREKKTPLEKMKIFASVPIE
MSAVFEDWNKGELDSFLIEITKDILKFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSRCLSSLFDERQKASQVLQGPNPTYKGKDTTYFNFKDKGNSGSPIQPSLEWLVALREKKTPLEKMKIFASVP**
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSAVFEDWNKGELDSFLIEITKDILKFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSRCLSSLFDERQKASQVLQGPNPTYKGKDTTYFNFKDKGNSGSPIQPSLEWLVALREKKTPLEKMKIFASVPIE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query145 2.2.26 [Sep-21-2011]
O60037 485 6-phosphogluconate dehydr N/A N/A 0.710 0.212 0.692 1e-38
P00349 483 6-phosphogluconate dehydr N/A N/A 0.903 0.271 0.575 2e-35
P52209 483 6-phosphogluconate dehydr yes N/A 0.903 0.271 0.583 4e-35
P53319 492 6-phosphogluconate dehydr yes N/A 0.634 0.186 0.728 3e-34
P85968 483 6-phosphogluconate dehydr yes N/A 0.903 0.271 0.568 4e-34
Q9DCD0 483 6-phosphogluconate dehydr yes N/A 0.903 0.271 0.560 6e-34
P38720 489 6-phosphogluconate dehydr no N/A 0.634 0.188 0.728 3e-33
P41570 481 6-phosphogluconate dehydr N/A N/A 0.710 0.214 0.663 9e-33
P41573 481 6-phosphogluconate dehydr N/A N/A 0.710 0.214 0.653 2e-32
P41572 481 6-phosphogluconate dehydr yes N/A 0.710 0.214 0.653 2e-32
>sp|O60037|6PGD_CUNEL 6-phosphogluconate dehydrogenase, decarboxylating OS=Cunninghamella elegans GN=6-PGD PE=2 SV=1 Back     alignment and function desciption
 Score =  157 bits (398), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 72/104 (69%), Positives = 90/104 (86%), Gaps = 1/104 (0%)

Query: 1   MSAVFEDWNKGELDSFLIEITKDILKFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYG 60
           M+ +FE+WNKG+LDSFLIEIT+DIL+FKDTDG PLV KI+D AGQKGTGKWTAI +LD G
Sbjct: 218 MADIFEEWNKGDLDSFLIEITRDILRFKDTDGQPLVTKIRDTAGQKGTGKWTAIDSLDRG 277

Query: 61  VPVTLIGESVFSRCLSSLFDERQKASQVLQGPNPT-YKGKDTTY 103
           +PVTLIGE+V+SRCLSSL DER +AS++LQGP+ + + G   T+
Sbjct: 278 IPVTLIGEAVYSRCLSSLKDERVRASKILQGPSSSKFTGDKKTF 321
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.
Cunninghamella elegans (taxid: 4853)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 4
>sp|P00349|6PGD_SHEEP 6-phosphogluconate dehydrogenase, decarboxylating OS=Ovis aries GN=PGD PE=1 SV=4 Back     alignment and function description
>sp|P52209|6PGD_HUMAN 6-phosphogluconate dehydrogenase, decarboxylating OS=Homo sapiens GN=PGD PE=1 SV=3 Back     alignment and function description
>sp|P53319|6PGD2_YEAST 6-phosphogluconate dehydrogenase, decarboxylating 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GND2 PE=1 SV=1 Back     alignment and function description
>sp|P85968|6PGD_RAT 6-phosphogluconate dehydrogenase, decarboxylating OS=Rattus norvegicus GN=Pgd PE=1 SV=1 Back     alignment and function description
>sp|Q9DCD0|6PGD_MOUSE 6-phosphogluconate dehydrogenase, decarboxylating OS=Mus musculus GN=Pgd PE=2 SV=3 Back     alignment and function description
>sp|P38720|6PGD1_YEAST 6-phosphogluconate dehydrogenase, decarboxylating 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GND1 PE=1 SV=1 Back     alignment and function description
>sp|P41570|6PGD_CERCA 6-phosphogluconate dehydrogenase, decarboxylating OS=Ceratitis capitata GN=Pgd PE=2 SV=1 Back     alignment and function description
>sp|P41573|6PGD_DROSI 6-phosphogluconate dehydrogenase, decarboxylating OS=Drosophila simulans GN=Pgd PE=3 SV=1 Back     alignment and function description
>sp|P41572|6PGD_DROME 6-phosphogluconate dehydrogenase, decarboxylating OS=Drosophila melanogaster GN=Pgd PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query145
259016027 263 6-phosphogluconate dehydrogenase [Frankl 0.882 0.486 0.674 2e-40
262304081 251 phosphogluconate dehydrogenase [Acheta d 0.882 0.509 0.651 1e-39
262304115 251 phosphogluconate dehydrogenase [Eremocos 0.882 0.509 0.651 5e-39
157814166 251 putative 6-phosphogluconate dehydrogenas 0.882 0.509 0.674 5e-39
262304185 250 phosphogluconate dehydrogenase [Scolopen 0.882 0.512 0.640 1e-38
328710078 482 PREDICTED: 6-phosphogluconate dehydrogen 0.882 0.265 0.632 2e-38
262304163 251 phosphogluconate dehydrogenase [Periplan 0.882 0.509 0.620 3e-38
262304159 251 phosphogluconate dehydrogenase [Nicoleti 0.882 0.509 0.651 3e-38
262304105 251 phosphogluconate dehydrogenase [Crateros 0.882 0.509 0.643 3e-38
262304097 251 phosphogluconate dehydrogenase [Ctenolep 0.882 0.509 0.651 3e-38
>gi|259016027|gb|ACV89296.1| 6-phosphogluconate dehydrogenase [Frankliniella fusca] Back     alignment and taxonomy information
 Score =  170 bits (430), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 87/129 (67%), Positives = 98/129 (75%), Gaps = 1/129 (0%)

Query: 1   MSAVFEDWNKGELDSFLIEITKDILKFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYG 60
           MS VFE+WNKGELDSFLIEITKDILKFKDTDG PLVEKI+D AGQKGTGKWTAISALDYG
Sbjct: 22  MSHVFEEWNKGELDSFLIEITKDILKFKDTDGLPLVEKIRDSAGQKGTGKWTAISALDYG 81

Query: 61  VPVTLIGESVFSRCLSSLFDERQKASQVLQGP-NPTYKGKDTTYFNFKDKGNSGSPIQPS 119
            PVTLIGESVF+RCLSSL DER +AS+VL+GP N  + G    +     +    S I   
Sbjct: 82  QPVTLIGESVFARCLSSLTDERSQASKVLKGPQNAQFTGDKKAFLEHIRQALYASKIVSY 141

Query: 120 LEWLVALRE 128
            +  + LRE
Sbjct: 142 AQGFMLLRE 150

Source: Frankliniella fusca

Species: Frankliniella fusca

Genus: Frankliniella

Family: Thripidae

Order: Thysanoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|262304081|gb|ACY44633.1| phosphogluconate dehydrogenase [Acheta domesticus] Back     alignment and taxonomy information
>gi|262304115|gb|ACY44650.1| phosphogluconate dehydrogenase [Eremocosta gigasella] Back     alignment and taxonomy information
>gi|157814166|gb|ABV81828.1| putative 6-phosphogluconate dehydrogenase [Lithobius forticatus] Back     alignment and taxonomy information
>gi|262304185|gb|ACY44685.1| phosphogluconate dehydrogenase [Scolopendra polymorpha] Back     alignment and taxonomy information
>gi|328710078|ref|XP_001950254.2| PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|262304163|gb|ACY44674.1| phosphogluconate dehydrogenase [Periplaneta americana] Back     alignment and taxonomy information
>gi|262304159|gb|ACY44672.1| phosphogluconate dehydrogenase [Nicoletia meinerti] Back     alignment and taxonomy information
>gi|262304105|gb|ACY44645.1| phosphogluconate dehydrogenase [Craterostigmus tasmanianus] Back     alignment and taxonomy information
>gi|262304097|gb|ACY44641.1| phosphogluconate dehydrogenase [Ctenolepisma lineata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query145
UNIPROTKB|Q5ZIZ0 483 PGD "6-phosphogluconate dehydr 0.882 0.265 0.596 3.2e-33
UNIPROTKB|B4DQJ8 470 PGD "6-phosphogluconate dehydr 0.903 0.278 0.583 3.2e-33
UNIPROTKB|F5H7U0 461 PGD "6-phosphogluconate dehydr 0.903 0.284 0.583 3.2e-33
UNIPROTKB|K7ELN9224 PGD "6-phosphogluconate dehydr 0.903 0.584 0.583 3.2e-33
UNIPROTKB|P52209 483 PGD "6-phosphogluconate dehydr 0.903 0.271 0.583 3.2e-33
UNIPROTKB|Q3ZCI4 483 PGD "6-phosphogluconate dehydr 0.903 0.271 0.575 5.2e-33
UNIPROTKB|P00349 483 PGD "6-phosphogluconate dehydr 0.903 0.271 0.575 8.5e-33
UNIPROTKB|F1PE09 483 PGD "6-phosphogluconate dehydr 0.903 0.271 0.568 1.4e-32
RGD|1583832 483 Pgd "phosphogluconate dehydrog 0.903 0.271 0.568 1.4e-32
MGI|MGI:97553 483 Pgd "phosphogluconate dehydrog 0.903 0.271 0.560 2.3e-32
UNIPROTKB|Q5ZIZ0 PGD "6-phosphogluconate dehydrogenase, decarboxylating" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 77/129 (59%), Positives = 92/129 (71%)

Query:     1 MSAVFEDWNKGELDSFLIEITKDILKFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYG 60
             MS VFE+WN  ELDSFLIEIT +ILKFKD DG  L+ KI+D AGQKGTGKWTAISAL+YG
Sbjct:   216 MSQVFEEWNNTELDSFLIEITANILKFKDKDGKYLLPKIRDSAGQKGTGKWTAISALEYG 275

Query:    61 VPVTLIGESVFSRCLSSLFDERQKASQVLQGPNPT-YKGKDTTYFNFKDKGNSGSPIQPS 119
             VPVTLIGE+VF+RCLSSL DER +AS++L GP  T + G    +     K    S I   
Sbjct:   276 VPVTLIGEAVFARCLSSLKDERVQASKLLNGPKLTQFSGNKKAFLEDIRKALYASKIISY 335

Query:   120 LEWLVALRE 128
              +  + LR+
Sbjct:   336 AQGFMLLRQ 344
GO:0050661 "NADP binding" evidence=IEA
GO:0004616 "phosphogluconate dehydrogenase (decarboxylating) activity" evidence=IEA
GO:0009051 "pentose-phosphate shunt, oxidative branch" evidence=IEA
GO:0019322 "pentose biosynthetic process" evidence=IEA
UNIPROTKB|B4DQJ8 PGD "6-phosphogluconate dehydrogenase, decarboxylating" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F5H7U0 PGD "6-phosphogluconate dehydrogenase, decarboxylating" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|K7ELN9 PGD "6-phosphogluconate dehydrogenase, decarboxylating" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P52209 PGD "6-phosphogluconate dehydrogenase, decarboxylating" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q3ZCI4 PGD "6-phosphogluconate dehydrogenase, decarboxylating" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P00349 PGD "6-phosphogluconate dehydrogenase, decarboxylating" [Ovis aries (taxid:9940)] Back     alignment and assigned GO terms
UNIPROTKB|F1PE09 PGD "6-phosphogluconate dehydrogenase, decarboxylating" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1583832 Pgd "phosphogluconate dehydrogenase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:97553 Pgd "phosphogluconate dehydrogenase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q7VMX46PGD_HAEDU1, ., 1, ., 1, ., 4, 40.62920.61370.1838yesN/A
O833516PGD_TREPA1, ., 1, ., 1, ., 4, 40.55430.63440.1885yesN/A
P967896PGD_LACLM1, ., 1, ., 1, ., 4, 40.60600.67580.2076yesN/A
P437746PGD_HAEIN1, ., 1, ., 1, ., 4, 40.62920.61370.1838yesN/A
Q8TA036PGD_DICDI1, ., 1, ., 1, ., 4, 40.54800.70340.2068yesN/A
P415806PGD_SHISO1, ., 1, ., 1, ., 4, 40.56120.67580.2202yesN/A
Q6GGI76PGD_STAAR1, ., 1, ., 1, ., 4, 40.55100.67580.2094yesN/A
P415826PGD_CITDI1, ., 1, ., 1, ., 4, 40.54080.67580.2202yesN/A
P788126PGD_SCHPO1, ., 1, ., 1, ., 4, 40.64280.67580.1991yesN/A
P533196PGD2_YEAST1, ., 1, ., 1, ., 4, 40.72820.63440.1869yesN/A
P377546PGD9_ECOLX1, ., 1, ., 1, ., 4, 40.54830.64130.1987yesN/A
P859686PGD_RAT1, ., 1, ., 1, ., 4, 40.56810.90340.2712yesN/A
P140626PGD_SALTY1, ., 1, ., 1, ., 4, 40.57600.63440.1965yesN/A
Q931R36PGD_STAAM1, ., 1, ., 1, ., 4, 40.55100.67580.2094yesN/A
Q5HFR26PGD_STAAC1, ., 1, ., 1, ., 4, 40.55100.67580.2094yesN/A
P415796PGD_SHIDY1, ., 1, ., 1, ., 4, 40.58690.63440.2067yesN/A
P633356PGD_STAAW1, ., 1, ., 1, ., 4, 40.55100.67580.2094yesN/A
P633346PGD_STAAN1, ., 1, ., 1, ., 4, 40.55100.67580.2094yesN/A
Q5HP426PGD_STAEQ1, ., 1, ., 1, ., 4, 40.54800.71720.2222yesN/A
P522096PGD_HUMAN1, ., 1, ., 1, ., 4, 40.58330.90340.2712yesN/A
P572086PGD_BUCAI1, ., 1, ., 1, ., 4, 40.56520.63440.1965yesN/A
P377566PGD_SHIFL1, ., 1, ., 1, ., 4, 40.56120.67580.2094yesN/A
Q89AX56PGD_BUCBP1, ., 1, ., 1, ., 4, 40.54340.63440.1965yesN/A
Q9DCD06PGD_MOUSE1, ., 1, ., 1, ., 4, 40.56060.90340.2712yesN/A
P808596PGD2_BACSU1, ., 1, ., 1, ., 4, 40.61290.63440.1961yesN/A
P415766PGD_KLEPN1, ., 1, ., 1, ., 4, 40.55910.64130.1987yesN/A
P215776PGD_SYNE71, ., 1, ., 1, ., 4, 40.56520.61370.1889yesN/A
P415726PGD_DROME1, ., 1, ., 1, ., 4, 40.65380.71030.2141yesN/A
P415786PGD_SHIBO1, ., 1, ., 1, ., 4, 40.52880.71720.2337yesN/A
Q6G9546PGD_STAAS1, ., 1, ., 1, ., 4, 40.55100.67580.2094yesN/A
Q9CHU66PGD_LACLA1, ., 1, ., 1, ., 4, 40.60600.67580.2076yesN/A
Q8CP476PGD_STAES1, ., 1, ., 1, ., 4, 40.54800.71720.2222yesN/A
Q177616PGD_CAEEL1, ., 1, ., 1, ., 4, 40.66300.63440.1900yesN/A
Q9ZHD96PGD_BUCAP1, ., 1, ., 1, ., 4, 40.53760.63440.1945yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.1.10.691
4th Layer1.1.1.44LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query145
pfam00393 290 pfam00393, 6PGD, 6-phosphogluconate dehydrogenase, 9e-58
PRK09287 459 PRK09287, PRK09287, 6-phosphogluconate dehydrogena 2e-53
TIGR00873 467 TIGR00873, gnd, 6-phosphogluconate dehydrogenase ( 3e-50
COG0362 473 COG0362, Gnd, 6-phosphogluconate dehydrogenase [Ca 7e-50
PTZ00142 470 PTZ00142, PTZ00142, 6-phosphogluconate dehydrogena 2e-39
PLN02350 493 PLN02350, PLN02350, phosphogluconate dehydrogenase 1e-28
COG1023300 COG1023, Gnd, Predicted 6-phosphogluconate dehydro 2e-09
PRK09599301 PRK09599, PRK09599, 6-phosphogluconate dehydrogena 8e-09
PRK12490299 PRK12490, PRK12490, 6-phosphogluconate dehydrogena 3e-07
TIGR00872298 TIGR00872, gnd_rel, 6-phosphogluconate dehydrogena 3e-06
>gnl|CDD|215895 pfam00393, 6PGD, 6-phosphogluconate dehydrogenase, C-terminal domain Back     alignment and domain information 
 Score =  180 bits (460), Expect = 9e-58
 Identities = 65/100 (65%), Positives = 76/100 (76%)

Query: 1   MSAVFEDWNKGELDSFLIEITKDILKFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYG 60
           ++ VFE+WNKGELDS+LIEIT DIL+ KD DG PLV+KI D AGQKGTGKWT  SAL+ G
Sbjct: 37  IADVFEEWNKGELDSYLIEITADILRKKDEDGKPLVDKILDKAGQKGTGKWTVQSALELG 96

Query: 61  VPVTLIGESVFSRCLSSLFDERQKASQVLQGPNPTYKGKD 100
           VPV LI E+VF+R LSSL +ER  AS+VL GP       D
Sbjct: 97  VPVPLITEAVFARYLSSLKEERVAASKVLSGPKAAKDKGD 136

This family represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. Length = 290
>gnl|CDD|236453 PRK09287, PRK09287, 6-phosphogluconate dehydrogenase; Validated Back     alignment and domain information
>gnl|CDD|129951 TIGR00873, gnd, 6-phosphogluconate dehydrogenase (decarboxylating) Back     alignment and domain information
>gnl|CDD|223439 COG0362, Gnd, 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|240287 PTZ00142, PTZ00142, 6-phosphogluconate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|215200 PLN02350, PLN02350, phosphogluconate dehydrogenase (decarboxylating) Back     alignment and domain information
>gnl|CDD|223954 COG1023, Gnd, Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|236582 PRK09599, PRK09599, 6-phosphogluconate dehydrogenase-like protein; Reviewed Back     alignment and domain information
>gnl|CDD|237116 PRK12490, PRK12490, 6-phosphogluconate dehydrogenase-like protein; Reviewed Back     alignment and domain information
>gnl|CDD|233163 TIGR00872, gnd_rel, 6-phosphogluconate dehydrogenase (decarboxylating) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 145
COG0362 473 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate 100.0
PF00393 291 6PGD: 6-phosphogluconate dehydrogenase, C-terminal 100.0
KOG2653|consensus 487 100.0
PTZ00142 470 6-phosphogluconate dehydrogenase; Provisional 100.0
PRK09287 459 6-phosphogluconate dehydrogenase; Validated 100.0
TIGR00873 467 gnd 6-phosphogluconate dehydrogenase, decarboxylat 100.0
PLN02350 493 phosphogluconate dehydrogenase (decarboxylating) 100.0
COG1023300 Gnd Predicted 6-phosphogluconate dehydrogenase [Ca 99.77
TIGR00872298 gnd_rel 6-phosphogluconate dehydrogenase (decarbox 99.36
PLN02350493 phosphogluconate dehydrogenase (decarboxylating) 98.57
PRK09287459 6-phosphogluconate dehydrogenase; Validated 98.56
TIGR00873467 gnd 6-phosphogluconate dehydrogenase, decarboxylat 98.47
PTZ00142470 6-phosphogluconate dehydrogenase; Provisional 98.42
PRK09599301 6-phosphogluconate dehydrogenase-like protein; Rev 98.21
PRK12490299 6-phosphogluconate dehydrogenase-like protein; Rev 97.89
PF00393291 6PGD: 6-phosphogluconate dehydrogenase, C-terminal 97.66
TIGR00872298 gnd_rel 6-phosphogluconate dehydrogenase (decarbox 96.04
PRK09599301 6-phosphogluconate dehydrogenase-like protein; Rev 92.16
KOG2653|consensus487 88.55
COG0362473 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate 84.37
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=4.7e-55  Score=378.40  Aligned_cols=141  Identities=50%  Similarity=0.715  Sum_probs=134.0

Q ss_pred             ChHHHHhhccCcchhHHHHHHHHHhhccCCC-CcccccccccccCCCchhHHHHHHHHhcCCChhHHHHHHHHhhhccch
Q psy9641           1 MSAVFEDWNKGELDSFLIEITKDILKFKDTD-GAPLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSRCLSSLF   79 (145)
Q Consensus         1 ia~vf~~Wn~G~l~SyLleIt~~il~~kD~~-g~~lld~I~D~a~~kGTG~Wt~~eAl~l~vp~p~I~~Av~aR~~S~~k   79 (145)
                      |++||++||+|+|+|||+|||++||++||++ |+||||+|+|+|+|||||+||+++|+++|||+|.|++|||+|++|+.|
T Consensus       215 i~~vF~~WN~geL~SYLIeIT~~IL~~kD~~~~kplvd~ILD~AgQKGTGkWt~~~AldlGvP~t~I~eaVfAR~lSs~K  294 (473)
T COG0362         215 IAEVFEEWNKGELDSYLIEITADILRKKDEEGGKPLVDKILDKAGQKGTGKWTVISALDLGVPLTLITEAVFARYLSSLK  294 (473)
T ss_pred             HHHHHHHhccCcchHHHHHHHHHHHhhcCcccCCchHHHHHHHhcCCCcchhhHHHHHHcCCCcHHHHHHHHHHHHHHhH
Confidence            6899999999999999999999999999988 459999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhCCCCCCCCCCcchhHHHHHHhhhccchhhHHHHHHHHHHhhhhccccCCCCC
Q psy9641          80 DERQKASQVLQGPNPTYKGKDTTYFNFKDKGNSGSPIQPSLEWLVALREKKTPLEKMKIFAS  141 (145)
Q Consensus        80 ~~R~~as~~~~~~~~~~~~~~~~~~~~l~~Al~~s~i~syaQGf~Ll~~As~~~~W~~~~~~  141 (145)
                      ++|+++++.|++|.....+|+++|++++|+|||+|||+||||||+||++||++|||++++.+
T Consensus       295 ~eR~~Ask~l~~~~~~~~~dk~~fi~~vr~ALy~sKI~sYAQGF~~l~~AS~e~gW~l~~~~  356 (473)
T COG0362         295 DERVAASKVLAGPKLGEPGDKEEFIEDVRQALYASKIVSYAQGFALLRAASKEYGWDLNLGE  356 (473)
T ss_pred             HHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHH
Confidence            99999999999885444678999999999999999999999999999999999999999743

>PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1 Back     alignment and domain information
>KOG2653|consensus Back     alignment and domain information
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional Back     alignment and domain information
>PRK09287 6-phosphogluconate dehydrogenase; Validated Back     alignment and domain information
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating Back     alignment and domain information
>PLN02350 phosphogluconate dehydrogenase (decarboxylating) Back     alignment and domain information
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) Back     alignment and domain information
>PLN02350 phosphogluconate dehydrogenase (decarboxylating) Back     alignment and domain information
>PRK09287 6-phosphogluconate dehydrogenase; Validated Back     alignment and domain information
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating Back     alignment and domain information
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional Back     alignment and domain information
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed Back     alignment and domain information
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed Back     alignment and domain information
>PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1 Back     alignment and domain information
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) Back     alignment and domain information
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed Back     alignment and domain information
>KOG2653|consensus Back     alignment and domain information
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query145
1pgn_A 482 Crystallographic Study Of Coenzyme, Coenzyme Analog 3e-36
2jkv_A 505 Structure Of Human Phosphogluconate Dehydrogenase I 4e-36
4gwg_A 484 Crystal Structure Analysis Of 6-Phosphogluconate De 5e-36
2p4q_A 497 Crystal Structure Analysis Of Gnd1 In Saccharomyces 3e-34
2iyp_A 473 Product Rup Length = 473 2e-27
2iz0_A 474 Pex Inhibitor-Home Data Length = 474 2e-27
2iyo_A 472 Structural Characterization Of A Bacterial 6pdh Rev 2e-27
2w8z_A 470 Geobacillus Stearothermophilus 6-Phosphogluconate D 1e-26
2w90_A 471 Geobacillus Stearothermophilus 6-Phosphogluconate D 1e-26
3fwn_A 480 Dimeric 6-Phosphogluconate Dehydrogenase Complexed 3e-24
2zya_A 480 Dimeric 6-Phosphogluconate Dehydrogenase Complexed 3e-24
2zyg_A 480 Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenas 2e-23
1pgj_A 478 X-Ray Structure Of 6-Phosphogluconate Dehydrogenase 4e-12
>pdb|1PGN|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And Substrate Binding In 6-Phosphogluconate Dehydrogenase: Implications For Nadp Specificity And The Enzyme Mechanism Length = 482 Back     alignment and structure 
Iteration: 1

 Score =  147 bits (370), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 76/132 (57%), Positives = 94/132 (71%), Gaps = 1/132 (0%)
Query: 1   MSAVFEDWNKGELDSFLIEITKDILKFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYG 60
           M+  FE+WNK ELDSFLIEIT  ILKF+D DG  L+ KI+D AGQKGTGKWTAISAL+YG
Sbjct: 215 MAKAFEEWNKTELDSFLIEITASILKFQDADGKHLLPKIRDSAGQKGTGKWTAISALEYG 274
Query: 61  VPVTLIGESVFSRCLSSLFDERQKASQVLQGP-NPTYKGKDTTYFNFKDKGNSGSPIQPS 119
           VPVTLIGE+VF+RCLSSL DER +AS+ L+GP N  ++G   ++     K    S I   
Sbjct: 275 VPVTLIGEAVFARCLSSLKDERIQASKKLKGPQNIPFEGDKKSFLEDIRKALYASKIISY 334
Query: 120 LEWLVALREKKT 131
            +  + LR+  T
Sbjct: 335 AQGFMLLRQAAT 346
>pdb|2JKV|A Chain A, Structure Of Human Phosphogluconate Dehydrogenase In Complex With Nadph At 2.53a Length = 505 Back     alignment and structure
>pdb|4GWG|A Chain A, Crystal Structure Analysis Of 6-Phosphogluconate Dehydrogenase Apo- Form Length = 484 Back     alignment and structure
>pdb|2P4Q|A Chain A, Crystal Structure Analysis Of Gnd1 In Saccharomyces Cerevisiae Length = 497 Back     alignment and structure
>pdb|2IYP|A Chain A, Product Rup Length = 473 Back     alignment and structure
>pdb|2IZ0|A Chain A, Pex Inhibitor-Home Data Length = 474 Back     alignment and structure
>pdb|2IYO|A Chain A, Structural Characterization Of A Bacterial 6pdh Reveals Aspects Of Specificity, Mechanism And Mode Of Inhibition Length = 472 Back     alignment and structure
>pdb|2W8Z|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate Dehydrogenase With Bound 6-Phosphogluconate Length = 470 Back     alignment and structure
>pdb|2W90|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate Dehydrogenase With Bound 6-Phosphogluconate Length = 471 Back     alignment and structure
>pdb|3FWN|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6- Phosphogluconate And 2'-Monophosphoadenosine-5'-Diphosphate Length = 480 Back     alignment and structure
>pdb|2ZYA|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6- Phosphogluconate Length = 480 Back     alignment and structure
>pdb|2ZYG|A Chain A, Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenase Length = 480 Back     alignment and structure
>pdb|1PGJ|A Chain A, X-Ray Structure Of 6-Phosphogluconate Dehydrogenase From The Protozoan Parasite T. Brucei Length = 478 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query145
2pgd_A 482 6-phosphogluconate dehydrogenase; oxidoreductase ( 3e-57
2zyd_A 480 6-phosphogluconate dehydrogenase, decarboxylating; 3e-57
2iz1_A 474 6-phosphogluconate dehydrogenase, decarboxylating; 3e-55
2p4q_A 497 6-phosphogluconate dehydrogenase, decarboxylating; 3e-54
1pgj_A 478 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o 6e-50
4e21_A358 6-phosphogluconate dehydrogenase (decarboxylating; 2e-38
>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* Length = 482 Back     alignment and structure
 Score =  184 bits (469), Expect = 3e-57
 Identities = 70/104 (67%), Positives = 81/104 (77%)

Query: 1   MSAVFEDWNKGELDSFLIEITKDILKFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYG 60
           M+  FE+WNK ELDSFLIEIT  ILKF+D DG  L+ KI+D AGQKGTGKWTAISAL+YG
Sbjct: 215 MAKAFEEWNKTELDSFLIEITASILKFQDADGKHLLPKIRDSAGQKGTGKWTAISALEYG 274

Query: 61  VPVTLIGESVFSRCLSSLFDERQKASQVLQGPNPTYKGKDTTYF 104
           VPVTLIGE+VF+RCLSSL DER +AS+ L+GP       D   F
Sbjct: 275 VPVTLIGEAVFARCLSSLKDERIQASKKLKGPQNIPFEGDKKSF 318
>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* Length = 480 Back     alignment and structure
>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* Length = 474 Back     alignment and structure
>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} Length = 497 Back     alignment and structure
>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 Length = 478 Back     alignment and structure
>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} Length = 358 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query145
4gwg_A 484 6-phosphogluconate dehydrogenase, decarboxylating; 100.0
1pgj_A 478 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o 100.0
2iz1_A 474 6-phosphogluconate dehydrogenase, decarboxylating; 100.0
2p4q_A 497 6-phosphogluconate dehydrogenase, decarboxylating; 100.0
2pgd_A 482 6-phosphogluconate dehydrogenase; oxidoreductase ( 100.0
2zyd_A 480 6-phosphogluconate dehydrogenase, decarboxylating; 100.0
4e21_A358 6-phosphogluconate dehydrogenase (decarboxylating; 99.47
2p4q_A497 6-phosphogluconate dehydrogenase, decarboxylating; 98.38
2pgd_A482 6-phosphogluconate dehydrogenase; oxidoreductase ( 98.36
2zyd_A480 6-phosphogluconate dehydrogenase, decarboxylating; 98.29
2iz1_A474 6-phosphogluconate dehydrogenase, decarboxylating; 98.27
4gwg_A484 6-phosphogluconate dehydrogenase, decarboxylating; 97.83
4e21_A358 6-phosphogluconate dehydrogenase (decarboxylating; 96.33
1pgj_A478 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o 92.45
>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A Back     alignment and structure
Probab=100.00  E-value=1.6e-45  Score=323.97  Aligned_cols=141  Identities=55%  Similarity=0.832  Sum_probs=132.4

Q ss_pred             ChHHHHhhccCcchhHHHHHHHHHhhccCCCCcccccccccccCCCchhHHHHHHHHhcCCChhHHHHHHHHhhhccchH
Q psy9641           1 MSAVFEDWNKGELDSFLIEITKDILKFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSRCLSSLFD   80 (145)
Q Consensus         1 ia~vf~~Wn~G~l~SyLleIt~~il~~kD~~g~~lld~I~D~a~~kGTG~Wt~~eAl~l~vp~p~I~~Av~aR~~S~~k~   80 (145)
                      +.++|+.||+|.++|||+|++.++|.++|++|+|+||+|+|.++|||||+||+++|+++|||+|+|++|||+|++|++|+
T Consensus       217 l~~v~~~w~~G~~~S~l~e~~~~~l~~~D~~g~~~ld~i~d~~~~kgtG~wt~~~A~~~gvp~p~i~~av~~R~~S~~k~  296 (484)
T 4gwg_A          217 MAQAFEDWNKTELDSFLIEITANILKFQDTDGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKD  296 (484)
T ss_dssp             HHHHHHHHTTTTTCBHHHHHHHHHHHCBCTTSSBSGGGSCCCCCSSCTTHHHHHHHHHHTCCCHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHHcCCCccchHHHHHHHHHhcCCccCCccHHHHhccccCcchHHHHHHHHHHcCCCchHHHHHHHHHHHhhchH
Confidence            35789999999999999999999999999888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhCCCC-CCCCCCcchhHHHHHHhhhccchhhHHHHHHHHHHhhhhccccCCCCC
Q psy9641          81 ERQKASQVLQGPN-PTYKGKDTTYFNFKDKGNSGSPIQPSLEWLVALREKKTPLEKMKIFAS  141 (145)
Q Consensus        81 ~R~~as~~~~~~~-~~~~~~~~~~~~~l~~Al~~s~i~syaQGf~Ll~~As~~~~W~~~~~~  141 (145)
                      +|+++++.|++|. .....++++|+++||+|||||||+||+|||+||++||++|+|++|+..
T Consensus       297 ~r~~a~~~l~~~~~~~~~~~~~~~~~~~~~al~~~~i~~yaqGf~ll~~as~~~~w~l~~~~  358 (484)
T 4gwg_A          297 ERIQASKKLKGPQKFQFDGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGG  358 (484)
T ss_dssp             HHHHHHTTCCCC--CCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHH
T ss_pred             HHHHHHhhcCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence            9999999998874 344567889999999999999999999999999999999999999854
>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 Back     alignment and structure
>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* Back     alignment and structure
>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} Back     alignment and structure
>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* Back     alignment and structure
>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* Back     alignment and structure
>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} Back     alignment and structure
>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} Back     alignment and structure
>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* Back     alignment and structure
>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* Back     alignment and structure
>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* Back     alignment and structure
>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A Back     alignment and structure
>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} Back     alignment and structure
>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 145
d2pgda1 297 a.100.1.1 (A:177-473) 6-phosphogluconate dehydroge 6e-34
d1pgja1 300 a.100.1.1 (A:179-478) 6-phosphogluconate dehydroge 4e-32
>d2pgda1 a.100.1.1 (A:177-473) 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ovis orientalis aries) [TaxId: 9940]} Length = 297 Back     information, alignment and structure

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
domain: 6-phosphogluconate dehydrogenase (6PGD)
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

 Score =  118 bits (296), Expect = 6e-34
 Identities = 70/104 (67%), Positives = 81/104 (77%)

Query: 1   MSAVFEDWNKGELDSFLIEITKDILKFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYG 60
           M+  FE+WNK ELDSFLIEIT  ILKF+D DG  L+ KI+D AGQKGTGKWTAISAL+YG
Sbjct: 39  MAKAFEEWNKTELDSFLIEITASILKFQDADGKHLLPKIRDSAGQKGTGKWTAISALEYG 98

Query: 61  VPVTLIGESVFSRCLSSLFDERQKASQVLQGPNPTYKGKDTTYF 104
           VPVTLIGE+VF+RCLSSL DER +AS+ L+GP       D   F
Sbjct: 99  VPVTLIGEAVFARCLSSLKDERIQASKKLKGPQNIPFEGDKKSF 142
>d1pgja1 a.100.1.1 (A:179-478) 6-phosphogluconate dehydrogenase (6PGD) {Trypanosoma brucei [TaxId: 5691]} Length = 300 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query145
d2pgda1 297 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ov 100.0
d1pgja1 300 6-phosphogluconate dehydrogenase (6PGD) {Trypanoso 100.0
d2pgda1297 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ov 98.29
d1pgja1300 6-phosphogluconate dehydrogenase (6PGD) {Trypanoso 97.99
>d2pgda1 a.100.1.1 (A:177-473) 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ovis orientalis aries) [TaxId: 9940]} Back     information, alignment and structure
class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
domain: 6-phosphogluconate dehydrogenase (6PGD)
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=100.00  E-value=1.7e-48  Score=324.15  Aligned_cols=141  Identities=53%  Similarity=0.823  Sum_probs=132.5

Q ss_pred             ChHHHHhhccCcchhHHHHHHHHHhhccCCCCcccccccccccCCCchhHHHHHHHHhcCCChhHHHHHHHHhhhccchH
Q psy9641           1 MSAVFEDWNKGELDSFLIEITKDILKFKDTDGAPLVEKIKDYAGQKGTGKWTAISALDYGVPVTLIGESVFSRCLSSLFD   80 (145)
Q Consensus         1 ia~vf~~Wn~G~l~SyLleIt~~il~~kD~~g~~lld~I~D~a~~kGTG~Wt~~eAl~l~vp~p~I~~Av~aR~~S~~k~   80 (145)
                      |++||++||+|+++|||||||++||++||+++.|+||+|+|+|+|||||+||+++|+++|||+|+|++||++|++|+.|+
T Consensus        39 i~~vf~~w~~~~l~syLleit~~il~~kd~~~~~~ld~I~d~a~~kGTG~Wt~~~Al~lgvp~p~I~~Av~aR~~S~~k~  118 (297)
T d2pgda1          39 MAKAFEEWNKTELDSFLIEITASILKFQDADGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKD  118 (297)
T ss_dssp             HHHHHHHHTTTTTCBHHHHHHHHHHHCBCTTSSBSGGGSCCCCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHHhCCCccHHHHHHHHHHHhccCCCcCcchhhhhccccCCCchHHHHHHHHHcCCCchHHHHHHhhHhhcccHH
Confidence            57899999999999999999999999999888899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhCCCC-CCCCCCcchhHHHHHHhhhccchhhHHHHHHHHHHhhhhccccCCCCC
Q psy9641          81 ERQKASQVLQGPN-PTYKGKDTTYFNFKDKGNSGSPIQPSLEWLVALREKKTPLEKMKIFAS  141 (145)
Q Consensus        81 ~R~~as~~~~~~~-~~~~~~~~~~~~~l~~Al~~s~i~syaQGf~Ll~~As~~~~W~~~~~~  141 (145)
                      +|+++++.++++. .....+++.|+++|++|+|+++|+||+|||+||++||++|+|++|+.+
T Consensus       119 ~R~~~~~~~~~~~~~~~~~~~~~~i~~l~~al~~~~i~syaQGf~ll~~as~~~~w~ldl~~  180 (297)
T d2pgda1         119 ERIQASKKLKGPQNIPFEGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGG  180 (297)
T ss_dssp             HHHHHHHHCCCCCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHH
T ss_pred             HHHHhhhcccCcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcCccHHH
Confidence            9999999998763 334457788999999999999999999999999999999999999754
>d1pgja1 a.100.1.1 (A:179-478) 6-phosphogluconate dehydrogenase (6PGD) {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d2pgda1 a.100.1.1 (A:177-473) 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ovis orientalis aries) [TaxId: 9940]} Back     information, alignment and structure
>d1pgja1 a.100.1.1 (A:179-478) 6-phosphogluconate dehydrogenase (6PGD) {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure