Psyllid ID: psy9880

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280
Protein Sequence
MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQSCDELLLTSDAVYTHKDSILISTLDWGPPAPEKPRVEPKKFVKIGRPGYRVTKQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIAFKVSDRTGLYERITSGLVLVDHVKLTCQNQIRLLNIQQWLGRKKSSH
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEEccccccccEEEcccccHHHHHHHHHHHHHHHHccccccHHHHHcccccccccHHHHHccccccccccccccccccccccccccccEEEEEEccccccEEEEEEEEcccccccccccccccccHHcccccccccccccccccccccccccccccccccccEEEEEEEccccEEEEEEcccccccccccccEEEEccccccccHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccHHEEccccEEEEEEEEEcccccccHHHHccccHHHHHHHHHHHHHHHcccHHccHHHcccHHHHHHHHHHHHHHcccccccccccccEcEcEEEEEccccEEEEEEEccccccEEEEEEEEcccccccccccccccccHHHHcccccccHHcccccccEEEcccHccccccccccEEEEEEEccccEEEEEEcccccEEcccccEEEEEHHHccccHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mdyqnrpggktggggvaswseSNRDRRERLRQLALETIdlnkdpyfmknhlgsyecKLCLTlhnnegsylahtQGKKHQANLARRAAKeakdapqqscdeLLLTsdavythkdsilistldwgppapekprvepkkfvkigrpgyrvtkqrdpsngqqsllfqvdypeiaddvfprhrfmsAYSLLFqvdypeiaddvfprhrfmsayeqrieppdrkWQYLLFAaepyetiafkvsdrtglyeritsglvlVDHVKLTCQNQIRLLNIQQWlgrkkssh
Flexible Loop (DISEMBL)
mdyqnrpggktggggvaswsesnrDRRERLRQLALetidlnkdpYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQSCDELLLTSDAVYTHKDSIlistldwgppapekprvepkkfvkIGRPgyrvtkqrdpsngqqSLLFQVDYPEIADDVFPRHRFMSAYSLLFQVDYPEIADDVFPRHRFMSAyeqrieppdrKWQYLLFAAEPYETIAFKVSDRTGLYERITSGLVLVDHVKLTCQNQIrllniqqwlgrkkssh
Low Complexity Region (SEG)
MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQSCDELLLTSDAVYTHKDSILISTLDWGPPAPEKPRVEPKKFVKIGRPGYRVTKQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIAFKVSDRTGLYERITSGLVLVDHVKLTCQNQIRLLNIQQWLGRKKSSH
Disordered region (IsUnstruct)
********************************LALETIDLNKDPYFMKNHLGSYECKLCLTLHNNEGSYLA****************************ELLLTSDAVYTHKDSILISTLDWG************************************LLFQVDYPEIADDVFPRHRFMSAYSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIAFKVSDRTGLYERITSGLVLVDHVKLTCQNQIRLLNIQQWLG******
Disordered Region (DISOPRED)
***************************************LNKDPYFMKNHLGSYECKLCLTLHNNEGSYLA*******************************************************************KIGRPGYRVTKQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYSLLFQVDYPEIADDVFPRHRFMSA******PPDRKWQYLLFAAEPYETIAFKVSDRTGLYERITSGLVLVDHVKLTCQNQIR***************
Disordered Region (DISEMBL)
**************************RERLRQLALETIDLNKDPYFMKNHLGSYECKLCLTLHNNEGSYL**************************SCDELLLTSDAVYTHKDSILISTLDWGPPAPEKPRVEPKKFVKIGRPGYRVTKQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIAFKVSDRTGLYERITSGLVLVDHVKLTCQNQIRLLNIQQW********
Disordered Region (DISPRO)
**********************NRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQANLARRAAKEAKD******************H*****************KPRVEPKKFVKIGRPGYRVTKQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIAFKVSDRTGLYERITSGLVLVDHVKLTCQNQIRLLNIQQWL*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQSCDELLLTSDAVYTHKDSILISTLDWGPPAPEKPRVEPKKFVKIGRPGYRVTKQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIAFKVSDRTGLYERITSGLVLVDHVKLTCQNQIRLLNIQQWLGRKKSSH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	280	2.2.26 [Sep-21-2011]
Q62203	475	Splicing factor 3A subuni	yes	N/A	0.664	0.391	0.673	8e-76
Q6AXT8	471	Splicing factor 3A subuni	yes	N/A	0.664	0.394	0.682	2e-74
Q15428	464	Splicing factor 3A subuni	yes	N/A	0.664	0.400	0.677	3e-74
A5PJN8	477	Splicing factor 3A subuni	yes	N/A	0.664	0.389	0.677	5e-74
Q9P7L8	217	Pre-mRNA-splicing factor	yes	N/A	0.7	0.903	0.489	2e-57
Q54B65	215	Splicing factor 3A subuni	yes	N/A	0.646	0.841	0.484	4e-56
Q07350	266	Pre-mRNA-splicing factor	yes	N/A	0.653	0.687	0.266	1e-06

>sp|Q62203|SF3A2_MOUSE Splicing factor 3A subunit 2 OS=Mus musculus GN=Sf3a2 PE=2 SV=2

 Score =  283 bits (725), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 161/239 (67%), Positives = 172/239 (71%), Gaps = 53/239 (22%)

Query: 1   MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
           MD+Q+RPGGKTG GGVAS SESNRDRRERLRQLALETID+NKDPYFMKNHLGSYECKLCL
Sbjct: 1   MDFQHRPGGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCL 60

Query: 61  TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQSCDELLLTSDAVYTHKDSILISTL 120
           TLHNNEGSYLAHTQGKKHQ NLARRAAKEAK+AP Q                        
Sbjct: 61  TLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQ------------------------ 96

Query: 121 DWGPPAPEKPRVEPKKFVKIGRPGYRVTKQRDPSNGQQSLLFQVDYPEIADDVFPRHRFM 180
               PAPE+ +VE KKFVKIGRPGY+VTKQRD   GQQSLLF                  
Sbjct: 97  ----PAPEQVKVEVKKFVKIGRPGYKVTKQRDTEMGQQSLLF------------------ 134

Query: 181 SAYSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIAFKVSDR 239
                  Q+DYPEIA+ + PRHRFMSAYEQRIEPPDR+WQYLL AAEPYETIAFKV  R
Sbjct: 135 -------QIDYPEIAEGIMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIAFKVPSR 186

Subunit of the splicing factor SF3A required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex.
Mus musculus (taxid: 10090)

>sp|Q6AXT8|SF3A2_RAT Splicing factor 3A subunit 2 OS=Rattus norvegicus GN=Sf3a2 PE=2 SV=1

 Score =  278 bits (712), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 163/239 (68%), Positives = 172/239 (71%), Gaps = 53/239 (22%)

Query: 1   MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
           MD+Q+RPGGKTG GGVAS SESNRDRRERLRQLALETID+NKDPYFMKNHLGSYECKLCL
Sbjct: 1   MDFQHRPGGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCL 60

Query: 61  TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQSCDELLLTSDAVYTHKDSILISTL 120
           TLHNNEGSYLAHTQGKKHQ NLARRAAKEAK+AP Q                        
Sbjct: 61  TLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQ------------------------ 96

Query: 121 DWGPPAPEKPRVEPKKFVKIGRPGYRVTKQRDPSNGQQSLLFQVDYPEIADDVFPRHRFM 180
               PAPEK +VE KKFVKIGRPGY+VTKQRD   GQQSLLF                  
Sbjct: 97  ----PAPEKVKVEVKKFVKIGRPGYKVTKQRDTEMGQQSLLF------------------ 134

Query: 181 SAYSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIAFKVSDR 239
                  Q+DYPEIA+ V PRHRFMSAYEQRIEPPDR+WQYLL AAEPYETIAFKV  R
Sbjct: 135 -------QIDYPEIAEGVMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIAFKVPSR 186

Subunit of the splicing factor SF3A required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex.

Rattus norvegicus (taxid: 10116)

>sp|Q15428|SF3A2_HUMAN Splicing factor 3A subunit 2 OS=Homo sapiens GN=SF3A2 PE=1 SV=2

 Score =  278 bits (712), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 162/239 (67%), Positives = 172/239 (71%), Gaps = 53/239 (22%)

Query: 1   MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
           MD+Q+RPGGKTG GGVAS SESNRDRRERLRQLALETID+NKDPYFMKNHLGSYECKLCL
Sbjct: 1   MDFQHRPGGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCL 60

Query: 61  TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQSCDELLLTSDAVYTHKDSILISTL 120
           TLHNNEGSYLAHTQGKKHQ NLARRAAKEAK+AP Q                        
Sbjct: 61  TLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQ------------------------ 96

Query: 121 DWGPPAPEKPRVEPKKFVKIGRPGYRVTKQRDPSNGQQSLLFQVDYPEIADDVFPRHRFM 180
               PAPEK +VE KKFVKIGRPGY+VTKQRD   GQQSLLF                  
Sbjct: 97  ----PAPEKVKVEVKKFVKIGRPGYKVTKQRDSEMGQQSLLF------------------ 134

Query: 181 SAYSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIAFKVSDR 239
                  Q+DYPEIA+ + PRHRFMSAYEQRIEPPDR+WQYLL AAEPYETIAFKV  R
Sbjct: 135 -------QIDYPEIAEGIMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIAFKVPSR 186

Subunit of the splicing factor SF3A required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex.

Homo sapiens (taxid: 9606)

>sp|A5PJN8|SF3A2_BOVIN Splicing factor 3A subunit 2 OS=Bos taurus GN=SF3A2 PE=2 SV=1

 Score =  277 bits (709), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 162/239 (67%), Positives = 172/239 (71%), Gaps = 53/239 (22%)

Query: 1   MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
           MD+Q+RPGGKTG GGVAS SESNRDRRERLRQLALETID+NKDPYFMKNHLGSYECKLCL
Sbjct: 1   MDFQHRPGGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCL 60

Query: 61  TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQSCDELLLTSDAVYTHKDSILISTL 120
           TLHNNEGSYLAHTQGKKHQ NLARRAAKEAK+AP Q                        
Sbjct: 61  TLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQ------------------------ 96

Query: 121 DWGPPAPEKPRVEPKKFVKIGRPGYRVTKQRDPSNGQQSLLFQVDYPEIADDVFPRHRFM 180
               PAPEK +VE KKFVKIGRPGY+VTKQRD   GQQSLLF                  
Sbjct: 97  ----PAPEKVKVEVKKFVKIGRPGYKVTKQRDTEMGQQSLLF------------------ 134

Query: 181 SAYSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIAFKVSDR 239
                  Q+DYPEIA+ + PRHRFMSAYEQRIEPPDR+WQYLL AAEPYETIAFKV  R
Sbjct: 135 -------QIDYPEIAEGIMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIAFKVPSR 186

Subunit of the splicing factor SF3A required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex.

Bos taurus (taxid: 9913)

>sp|Q9P7L8|SAP62_SCHPO Pre-mRNA-splicing factor sap62 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sap62 PE=1 SV=1

 Score =  223 bits (567), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 119/243 (48%), Positives = 147/243 (60%), Gaps = 47/243 (19%)

Query: 1   MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
           MDYQNR G + GGGGVA + E+N  RRERLR+LALETIDL+KDPY MKNHLG++EC+LCL
Sbjct: 1   MDYQNRAGVRFGGGGVAGYQETNAARRERLRKLALETIDLSKDPYLMKNHLGTFECRLCL 60

Query: 61  TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQSCDELLLTSDAVYTHKDSILISTL 120
           T H NE SYL HTQGKKHQ NLARR A E K + + +   LL  S +    K S+     
Sbjct: 61  TTHANENSYLTHTQGKKHQTNLARRQALENKKSQENAPQVLLGISQSHVQVKKSV----- 115

Query: 121 DWGPPAPEKPRVEPKKFVKIGRPGYRVTKQRDPSNGQQSLLFQVDYPEIADDVFPRHRFM 180
                            VKIGRPGY+V+K R+  +G+  L FQ+ YP+I  +  PR    
Sbjct: 116 -----------------VKIGRPGYKVSKIREAESGKFGLRFQIKYPDIEVNAKPR---- 154

Query: 181 SAYSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIAFKVSDRT 240
                                +R MSAYEQR+E PDRK+QYL+ AAEPYE+IAFK+    
Sbjct: 155 ---------------------YRIMSAYEQRVEAPDRKFQYLVVAAEPYESIAFKIDRAP 193

Query: 241 GLY 243
           G +
Sbjct: 194 GKF 196

Involved in mRNA splicing where it associates with cdc5 and the other cwf proteins as part of the spliceosome.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q54B65|SF3A2_DICDI Splicing factor 3A subunit 2 OS=Dictyostelium discoideum GN=sf3a2 PE=3 SV=1

 Score =  218 bits (555), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 112/231 (48%), Positives = 142/231 (61%), Gaps = 50/231 (21%)

Query: 9   GKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCLTLHNNEGS 68
           GK G GG+ S    N DRRER +QL LE +D++KDPY + NH+GS+EC+LCLT+HNN G+
Sbjct: 5   GKAGSGGLQSSQYDNIDRRERQKQLVLEHVDVSKDPYIISNHIGSFECRLCLTVHNNVGN 64

Query: 69  YLAHTQGKKHQANLARRAAKEAKDAPQQSCDELLLTSDAVYTHKDSILISTLDWGPPAPE 128
           YLAHTQGKKHQ +LARRAAKE ++ P  S +  + T+                       
Sbjct: 65  YLAHTQGKKHQTHLARRAAKEQRENPSVSKNNYIQTT----------------------- 101

Query: 129 KPRVEPKKFVKIGRPGYRVTKQRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYSLLFQ 188
             RV  KK +KIGRPGY++ KQRD   GQ SLLFQ+DYPEI   + PRH           
Sbjct: 102 --RVIHKKTIKIGRPGYKIIKQRDSKTGQLSLLFQIDYPEIESGLQPRH----------- 148

Query: 189 VDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIAFKVSDR 239
                         R MSA+EQR+E P++ +QYLLFAAEPYETIAFK+ ++
Sbjct: 149 --------------RIMSAFEQRVEQPNKDYQYLLFAAEPYETIAFKIPNK 185

Subunit of the splicing factor SF3A required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA.

Dictyostelium discoideum (taxid: 44689)

>sp|Q07350|PRP11_YEAST Pre-mRNA-splicing factor PRP11 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRP11 PE=1 SV=1

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 97/236 (41%), Gaps = 53/236 (22%)

Query: 16  VASWSESNRDRRERLRQLALE------TIDLNKD------PYFMKNHLGSYECKLCLTLH 63
           +AS S+ N  RR+ +  L  +      T    KD      PY  KNH G   CKLC T+H
Sbjct: 16  IASESQFNLQRRKEVESLLSKGENVPYTFQDEKDDQVRSNPYIYKNHSGKLVCKLCNTMH 75

Query: 64  NNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQSCDELLLTSDAVYTHKDSILISTLDWG 123
            +  S   H  GKKH  N+ RR     K +         L  +   TH         D+ 
Sbjct: 76  MSWSSVERHLGGKKHGLNVLRRGISIEKSS---------LGREGQTTH---------DF- 116

Query: 124 PPAPEKPRVEPKKFVKIGR--PGYRVTKQRDPSNGQQSLLFQVDY-PEIADDVFPRHRFM 180
               ++  +E K+ +K     P  ++   ++P NG   L  QV+Y  E+ ++        
Sbjct: 117 --RQQQKIIEAKQSLKNNGTIPVCKIATVKNPKNGSVGLAIQVNYSSEVKEN-------- 166

Query: 181 SAYSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIAFKV 236
                   VD  + A  V P  R +S  E   +   +  ++L+ A EP+E IA ++
Sbjct: 167 -------SVDSDDKA-KVPPLIRIVSGLELS-DTKQKGKKFLVIAYEPFENIAIEL 213

mRNA splicing factors, PRP9, PRP11, and PRP21, are necessary for addition of the U2 snRNP to the pre-mRNA in an early step of spliceosome assembly.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	280
194752039	261	GF10865 [Drosophila ananassae] gi|190625	0.667	0.716	0.702	1e-87
289740415	267	splicing factor 3A subunit 2 [Glossina m	0.664	0.696	0.702	3e-87
195379390	260	GJ13983 [Drosophila virilis] gi|27374358	0.667	0.719	0.698	4e-87
195428092	260	GK16828 [Drosophila willistoni] gi|19415	0.667	0.719	0.694	1e-86
195128531	260	GI13650 [Drosophila mojavensis] gi|19392	0.667	0.719	0.694	1e-86
125979941	260	GA10545 [Drosophila pseudoobscura pseudo	0.667	0.719	0.694	2e-86
24663500	264	CG10754 [Drosophila melanogaster] gi|729	0.667	0.708	0.698	3e-86
194870079	264	GG13802 [Drosophila erecta] gi|195327235	0.667	0.708	0.698	4e-86
195021731	260	GH14494 [Drosophila grimshawi] gi|193898	0.667	0.719	0.690	7e-86
346470839	248	hypothetical protein [Amblyomma maculatu	0.664	0.75	0.690	9e-86

>gi|194752039|ref|XP_001958330.1| GF10865 [Drosophila ananassae] gi|190625612|gb|EDV41136.1| GF10865 [Drosophila ananassae]

 Score =  329 bits (843), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 168/239 (70%), Positives = 178/239 (74%), Gaps = 52/239 (21%)

Query: 1   MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
           MD+QNR GGKTG GGVASWSESNRDR+ERLRQLALETIDLNKDPYFMKNHLGSYECKLCL
Sbjct: 1   MDFQNRAGGKTGSGGVASWSESNRDRKERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60

Query: 61  TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQSCDELLLTSDAVYTHKDSILISTL 120
           TLHNNEGSYLAHTQGKKHQ NLARRAAKEAK+AP                   S+L    
Sbjct: 61  TLHNNEGSYLAHTQGKKHQENLARRAAKEAKEAP------------------SSLL---- 98

Query: 121 DWGPPAPEKPRVEPKKFVKIGRPGYRVTKQRDPSNGQQSLLFQVDYPEIADDVFPRHRFM 180
                APEKPRVEPKKFVKIGRPGYRVTKQR+PSNGQQSLLFQ+DYPEI+D + PRHR  
Sbjct: 99  -----APEKPRVEPKKFVKIGRPGYRVTKQREPSNGQQSLLFQIDYPEISDSIVPRHR-- 151

Query: 181 SAYSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIAFKVSDR 239
                                  FMSAYEQ+IEPPDRKWQYLLFA+EPYETI FKV  R
Sbjct: 152 -----------------------FMSAYEQKIEPPDRKWQYLLFASEPYETIGFKVPSR 187

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289740415|gb|ADD18955.1| splicing factor 3A subunit 2 [Glossina morsitans morsitans]

 Score =  327 bits (839), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 168/239 (70%), Positives = 177/239 (74%), Gaps = 53/239 (22%)

Query: 1   MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
           MD+QNR GGKTG GGVASWSE+NRDR+ERLRQLALETIDLNKDPYFMKNHLGSYECKLCL
Sbjct: 1   MDFQNRAGGKTGSGGVASWSETNRDRKERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60

Query: 61  TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQSCDELLLTSDAVYTHKDSILISTL 120
           TLHNNEGSYLAHTQGKKHQ NLARRAAKEAK+AP                   S++    
Sbjct: 61  TLHNNEGSYLAHTQGKKHQENLARRAAKEAKEAP-------------------SMM---- 97

Query: 121 DWGPPAPEKPRVEPKKFVKIGRPGYRVTKQRDPSNGQQSLLFQVDYPEIADDVFPRHRFM 180
                APEKPRVEPKKFVKIGRPGYRVTKQRDPSNGQQSLLFQ+DYPEI + V PRHR  
Sbjct: 98  -----APEKPRVEPKKFVKIGRPGYRVTKQRDPSNGQQSLLFQIDYPEITEGVIPRHR-- 150

Query: 181 SAYSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIAFKVSDR 239
                                  FMSAYEQ+IEPPDRKWQYLLFAAEPYETI FKV  R
Sbjct: 151 -----------------------FMSAYEQKIEPPDRKWQYLLFAAEPYETIGFKVPSR 186

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195379390|ref|XP_002048462.1| GJ13983 [Drosophila virilis] gi|27374358|gb|AAO01098.1| CG10754-PA [Drosophila virilis] gi|194155620|gb|EDW70804.1| GJ13983 [Drosophila virilis]

 Score =  327 bits (837), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 167/239 (69%), Positives = 178/239 (74%), Gaps = 52/239 (21%)

Query: 1   MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
           MD+QNR GGKTG GGVASWSE+NR+R+ERLRQLALETIDLNKDPYFMKNHLGSYECKLCL
Sbjct: 1   MDFQNRAGGKTGSGGVASWSETNRERKERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60

Query: 61  TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQSCDELLLTSDAVYTHKDSILISTL 120
           TLHNNEGSYLAHTQGKKHQ NLARRAAKEAKDAP                   S+L    
Sbjct: 61  TLHNNEGSYLAHTQGKKHQENLARRAAKEAKDAP------------------SSLL---- 98

Query: 121 DWGPPAPEKPRVEPKKFVKIGRPGYRVTKQRDPSNGQQSLLFQVDYPEIADDVFPRHRFM 180
                APEKPRVEPKKFVKIGRPGYRVTKQR+P+NGQQSLLFQ+DYPEI+D + PRHR  
Sbjct: 99  -----APEKPRVEPKKFVKIGRPGYRVTKQREPTNGQQSLLFQIDYPEISDGIVPRHR-- 151

Query: 181 SAYSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIAFKVSDR 239
                                  FMSAYEQ+IEPPDRKWQYLLFAAEPYETI FKV  R
Sbjct: 152 -----------------------FMSAYEQKIEPPDRKWQYLLFAAEPYETIGFKVPSR 187

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195428092|ref|XP_002062108.1| GK16828 [Drosophila willistoni] gi|194158193|gb|EDW73094.1| GK16828 [Drosophila willistoni]

 Score =  325 bits (833), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 166/239 (69%), Positives = 177/239 (74%), Gaps = 52/239 (21%)

Query: 1   MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
           MD+QNR GGKTG GGVASWSE+NRDR+ERLRQLALETIDLNKDPYFMKNHLGSYECKLCL
Sbjct: 1   MDFQNRAGGKTGSGGVASWSETNRDRKERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60

Query: 61  TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQSCDELLLTSDAVYTHKDSILISTL 120
           TLHNNEGSYLAHTQGKKHQ NLARRAAKEAK+AP                   S+L    
Sbjct: 61  TLHNNEGSYLAHTQGKKHQENLARRAAKEAKEAP------------------SSLL---- 98

Query: 121 DWGPPAPEKPRVEPKKFVKIGRPGYRVTKQRDPSNGQQSLLFQVDYPEIADDVFPRHRFM 180
                APEKPRVEPKKFVKIGRPGYRVTKQR+PSNGQQSLLFQ+DYPEI + + PRHR  
Sbjct: 99  -----APEKPRVEPKKFVKIGRPGYRVTKQREPSNGQQSLLFQIDYPEITESIVPRHR-- 151

Query: 181 SAYSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIAFKVSDR 239
                                  FMSAYEQ+IEPPDRKWQYLLFA+EPYETI FKV  R
Sbjct: 152 -----------------------FMSAYEQKIEPPDRKWQYLLFASEPYETIGFKVPSR 187

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195128531|ref|XP_002008716.1| GI13650 [Drosophila mojavensis] gi|193920325|gb|EDW19192.1| GI13650 [Drosophila mojavensis]

 Score =  325 bits (833), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 166/239 (69%), Positives = 178/239 (74%), Gaps = 52/239 (21%)

Query: 1   MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
           MD+QNR GGKTG GGVASWSE+NR+R+ERLRQLALETIDLNKDPYFMKNHLGSYECKLCL
Sbjct: 1   MDFQNRAGGKTGSGGVASWSETNRERKERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60

Query: 61  TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQSCDELLLTSDAVYTHKDSILISTL 120
           TLHNNEGSYLAHTQGKKHQ NLARRAAKEAKDAP                   S+L    
Sbjct: 61  TLHNNEGSYLAHTQGKKHQENLARRAAKEAKDAP------------------SSLL---- 98

Query: 121 DWGPPAPEKPRVEPKKFVKIGRPGYRVTKQRDPSNGQQSLLFQVDYPEIADDVFPRHRFM 180
                APEKPRVEPKKFVKIGRPGYRVTKQR+P+NGQQSLLFQ+DYPEI++ + PRHR  
Sbjct: 99  -----APEKPRVEPKKFVKIGRPGYRVTKQREPTNGQQSLLFQIDYPEISEGIVPRHR-- 151

Query: 181 SAYSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIAFKVSDR 239
                                  FMSAYEQ+IEPPDRKWQYLLFAAEPYETI FKV  R
Sbjct: 152 -----------------------FMSAYEQKIEPPDRKWQYLLFAAEPYETIGFKVPSR 187

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125979941|ref|XP_001354003.1| GA10545 [Drosophila pseudoobscura pseudoobscura] gi|195166735|ref|XP_002024190.1| GL22896 [Drosophila persimilis] gi|54640988|gb|EAL29739.1| GA10545 [Drosophila pseudoobscura pseudoobscura] gi|194107545|gb|EDW29588.1| GL22896 [Drosophila persimilis]

 Score =  325 bits (832), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 166/239 (69%), Positives = 177/239 (74%), Gaps = 52/239 (21%)

Query: 1   MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
           MD+QNR GGKTG GGVASWSE+NRDR+ERLRQLALETIDLNKDPYFMKNHLGSYECKLCL
Sbjct: 1   MDFQNRAGGKTGSGGVASWSETNRDRKERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60

Query: 61  TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQSCDELLLTSDAVYTHKDSILISTL 120
           TLHNNEGSYLAHTQGKKHQ NLARRAAKEAK+AP                   S+L    
Sbjct: 61  TLHNNEGSYLAHTQGKKHQENLARRAAKEAKEAP------------------SSLL---- 98

Query: 121 DWGPPAPEKPRVEPKKFVKIGRPGYRVTKQRDPSNGQQSLLFQVDYPEIADDVFPRHRFM 180
                APEKPRVEPKKFVKIGRPGYRVTKQR+PSNGQQSLLFQ+DYPEI + + PRHR  
Sbjct: 99  -----APEKPRVEPKKFVKIGRPGYRVTKQREPSNGQQSLLFQIDYPEITEAIVPRHR-- 151

Query: 181 SAYSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIAFKVSDR 239
                                  FMSAYEQ+IEPPDRKWQYLLFA+EPYETI FKV  R
Sbjct: 152 -----------------------FMSAYEQKIEPPDRKWQYLLFASEPYETIGFKVPSR 187

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24663500|ref|NP_648603.1| CG10754 [Drosophila melanogaster] gi|7294535|gb|AAF49876.1| CG10754 [Drosophila melanogaster] gi|21430304|gb|AAM50830.1| LD47455p [Drosophila melanogaster] gi|220944472|gb|ACL84779.1| CG10754-PA [synthetic construct] gi|220954270|gb|ACL89678.1| CG10754-PA [synthetic construct]

 Score =  324 bits (830), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 167/239 (69%), Positives = 176/239 (73%), Gaps = 52/239 (21%)

Query: 1   MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
           MD+QNR GGKTG GGVASWSE+NRDR+ERLRQLALETIDLNKDPYFMKNHLGSYECKLCL
Sbjct: 1   MDFQNRAGGKTGSGGVASWSETNRDRKERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60

Query: 61  TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQSCDELLLTSDAVYTHKDSILISTL 120
           TLHNNEGSYLAHTQGKKHQ NLARRAAKEAK+AP                   S+L    
Sbjct: 61  TLHNNEGSYLAHTQGKKHQDNLARRAAKEAKEAP------------------SSLL---- 98

Query: 121 DWGPPAPEKPRVEPKKFVKIGRPGYRVTKQRDPSNGQQSLLFQVDYPEIADDVFPRHRFM 180
                APEKPRVEPKKFVKIGRPGYRVTKQR+ SNGQQSLLFQVDYPEI + + PRHR  
Sbjct: 99  -----APEKPRVEPKKFVKIGRPGYRVTKQRELSNGQQSLLFQVDYPEITESIVPRHR-- 151

Query: 181 SAYSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIAFKVSDR 239
                                  FMSAYEQ+IEPPDRKWQYLLFAAEPYETI FKV  R
Sbjct: 152 -----------------------FMSAYEQKIEPPDRKWQYLLFAAEPYETIGFKVPSR 187

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194870079|ref|XP_001972582.1| GG13802 [Drosophila erecta] gi|195327235|ref|XP_002030327.1| GM24628 [Drosophila sechellia] gi|195493943|ref|XP_002094630.1| GE20095 [Drosophila yakuba] gi|195589928|ref|XP_002084701.1| GD12694 [Drosophila simulans] gi|190654365|gb|EDV51608.1| GG13802 [Drosophila erecta] gi|194119270|gb|EDW41313.1| GM24628 [Drosophila sechellia] gi|194180731|gb|EDW94342.1| GE20095 [Drosophila yakuba] gi|194196710|gb|EDX10286.1| GD12694 [Drosophila simulans]

 Score =  323 bits (829), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 167/239 (69%), Positives = 176/239 (73%), Gaps = 52/239 (21%)

Query: 1   MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
           MD+QNR GGKTG GGVASWSE+NRDR+ERLRQLALETIDLNKDPYFMKNHLGSYECKLCL
Sbjct: 1   MDFQNRAGGKTGSGGVASWSETNRDRKERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60

Query: 61  TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQSCDELLLTSDAVYTHKDSILISTL 120
           TLHNNEGSYLAHTQGKKHQ NLARRAAKEAK+AP                   S+L    
Sbjct: 61  TLHNNEGSYLAHTQGKKHQDNLARRAAKEAKEAP------------------SSLL---- 98

Query: 121 DWGPPAPEKPRVEPKKFVKIGRPGYRVTKQRDPSNGQQSLLFQVDYPEIADDVFPRHRFM 180
                APEKPRVEPKKFVKIGRPGYRVTKQR+ SNGQQSLLFQVDYPEI + + PRHR  
Sbjct: 99  -----APEKPRVEPKKFVKIGRPGYRVTKQRELSNGQQSLLFQVDYPEITESIVPRHR-- 151

Query: 181 SAYSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIAFKVSDR 239
                                  FMSAYEQ+IEPPDRKWQYLLFAAEPYETI FKV  R
Sbjct: 152 -----------------------FMSAYEQKIEPPDRKWQYLLFAAEPYETIGFKVPSR 187

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195021731|ref|XP_001985451.1| GH14494 [Drosophila grimshawi] gi|193898933|gb|EDV97799.1| GH14494 [Drosophila grimshawi]

 Score =  323 bits (827), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 165/239 (69%), Positives = 177/239 (74%), Gaps = 52/239 (21%)

Query: 1   MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
           MD+QNR GGKTG GGVASWSE+NR+R+ERLRQLALETIDLNKDPYFMKNHLGSYECKLCL
Sbjct: 1   MDFQNRAGGKTGSGGVASWSETNRERKERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60

Query: 61  TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQSCDELLLTSDAVYTHKDSILISTL 120
           TLHNNEGSYLAHTQGKKHQ NLARRAAKEAK++P                   S+L    
Sbjct: 61  TLHNNEGSYLAHTQGKKHQENLARRAAKEAKESP------------------SSLL---- 98

Query: 121 DWGPPAPEKPRVEPKKFVKIGRPGYRVTKQRDPSNGQQSLLFQVDYPEIADDVFPRHRFM 180
                APEKPRVEPKKFVKIGRPGYRVTKQR+PSN QQSLLFQ+DYPEI+D + PRHR  
Sbjct: 99  -----APEKPRVEPKKFVKIGRPGYRVTKQREPSNNQQSLLFQIDYPEISDGIVPRHR-- 151

Query: 181 SAYSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIAFKVSDR 239
                                  FMSAYEQ+IEPPDRKWQYLLFAAEPYETI FKV  R
Sbjct: 152 -----------------------FMSAYEQKIEPPDRKWQYLLFAAEPYETIGFKVPSR 187

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|346470839|gb|AEO35264.1| hypothetical protein [Amblyomma maculatum]

 Score =  322 bits (826), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 165/239 (69%), Positives = 174/239 (72%), Gaps = 53/239 (22%)

Query: 1   MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
           MD+Q+RPGGKTG GGVASWSESNRDRRERLRQLALETIDL KDPYFMKNHLGSYECKLCL
Sbjct: 1   MDFQHRPGGKTGSGGVASWSESNRDRRERLRQLALETIDLQKDPYFMKNHLGSYECKLCL 60

Query: 61  TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQSCDELLLTSDAVYTHKDSILISTL 120
           TLHNNEGSYLAHTQGKKHQANLARRAAKEAKD+P Q                        
Sbjct: 61  TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDSPIQ------------------------ 96

Query: 121 DWGPPAPEKPRVEPKKFVKIGRPGYRVTKQRDPSNGQQSLLFQVDYPEIADDVFPRHRFM 180
               PAP KPRV+ KKFVKIGRPGYRVTKQRD   GQQSLLFQ                 
Sbjct: 97  ----PAPAKPRVDIKKFVKIGRPGYRVTKQRDGETGQQSLLFQ----------------- 135

Query: 181 SAYSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIAFKVSDR 239
                   VDYPE+ D+V PRHRFMSAYEQ++EPPD+KWQYLLFAAEPYETIAFKV  R
Sbjct: 136 --------VDYPEVNDNVVPRHRFMSAYEQKVEPPDKKWQYLLFAAEPYETIAFKVPSR 186

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	280
FB|FBgn0036314	264	CG10754 [Drosophila melanogast	0.335	0.356	0.925	6e-72
RGD|1308627	471	Sf3a2 "splicing factor 3a, sub	0.357	0.212	0.89	4.2e-71
UNIPROTKB|A5PJN8	477	SF3A2 "Splicing factor 3A subu	0.357	0.209	0.89	5.3e-71
UNIPROTKB|G3MW14	411	SF3A2 "Splicing factor 3A subu	0.357	0.243	0.89	5.3e-71
UNIPROTKB|J9P6E2	478	SF3A2 "Uncharacterized protein	0.357	0.209	0.89	5.3e-71
UNIPROTKB|Q15428	464	SF3A2 "Splicing factor 3A subu	0.357	0.215	0.89	5.3e-71
UNIPROTKB|E2QXZ1	463	SF3A2 "Uncharacterized protein	0.357	0.215	0.89	1.4e-70
ZFIN|ZDB-GENE-040426-897	278	sf3a2 "splicing factor 3a, sub	0.357	0.359	0.88	2.9e-70
WB|WBGene00008683	222	repo-1 [Caenorhabditis elegans	0.335	0.423	0.819	2.9e-64
UNIPROTKB|Q19335	222	repo-1 "Protein REPO-1" [Caeno	0.335	0.423	0.819	2.9e-64

FB|FBgn0036314 CG10754 [Drosophila melanogaster (taxid:7227)]

 Score = 472 (171.2 bits), Expect = 6.0e-72, Sum P(2) = 6.0e-72
 Identities = 87/94 (92%), Positives = 91/94 (96%)

Query:     1 MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
             MD+QNR GGKTG GGVASWSE+NRDR+ERLRQLALETIDLNKDPYFMKNHLGSYECKLCL
Sbjct:     1 MDFQNRAGGKTGSGGVASWSETNRDRKERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60

Query:    61 TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAP 94
             TLHNNEGSYLAHTQGKKHQ NLARRAAKEAK+AP
Sbjct:    61 TLHNNEGSYLAHTQGKKHQDNLARRAAKEAKEAP 94

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS

GO:0005681 "spliceosomal complex" evidence=ISS

GO:0005686 "U2 snRNP" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0071011 "precatalytic spliceosome" evidence=IDA

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

RGD|1308627 Sf3a2 "splicing factor 3a, subunit 2" [Rattus norvegicus (taxid:10116)]

 Score = 474 (171.9 bits), Expect = 4.2e-71, Sum P(2) = 4.2e-71
 Identities = 89/100 (89%), Positives = 93/100 (93%)

Query:     1 MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
             MD+Q+RPGGKTG GGVAS SESNRDRRERLRQLALETID+NKDPYFMKNHLGSYECKLCL
Sbjct:     1 MDFQHRPGGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCL 60

Query:    61 TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQSCDE 100
             TLHNNEGSYLAHTQGKKHQ NLARRAAKEAK+AP Q   E
Sbjct:    61 TLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPE 100

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA;ISO

GO:0006397 "mRNA processing" evidence=IEA;ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=ISO

UNIPROTKB|A5PJN8 SF3A2 "Splicing factor 3A subunit 2" [Bos taurus (taxid:9913)]

 Score = 474 (171.9 bits), Expect = 5.3e-71, Sum P(2) = 5.3e-71
 Identities = 89/100 (89%), Positives = 93/100 (93%)

Query:     1 MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
             MD+Q+RPGGKTG GGVAS SESNRDRRERLRQLALETID+NKDPYFMKNHLGSYECKLCL
Sbjct:     1 MDFQHRPGGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCL 60

Query:    61 TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQSCDE 100
             TLHNNEGSYLAHTQGKKHQ NLARRAAKEAK+AP Q   E
Sbjct:    61 TLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPE 100

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|G3MW14 SF3A2 "Splicing factor 3A subunit 2" [Bos taurus (taxid:9913)]

 Score = 474 (171.9 bits), Expect = 5.3e-71, Sum P(2) = 5.3e-71
 Identities = 89/100 (89%), Positives = 93/100 (93%)

Query:     1 MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
             MD+Q+RPGGKTG GGVAS SESNRDRRERLRQLALETID+NKDPYFMKNHLGSYECKLCL
Sbjct:     1 MDFQHRPGGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCL 60

Query:    61 TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQSCDE 100
             TLHNNEGSYLAHTQGKKHQ NLARRAAKEAK+AP Q   E
Sbjct:    61 TLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPE 100

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|J9P6E2 SF3A2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 474 (171.9 bits), Expect = 5.3e-71, Sum P(2) = 5.3e-71
 Identities = 89/100 (89%), Positives = 93/100 (93%)

Query:     1 MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
             MD+Q+RPGGKTG GGVAS SESNRDRRERLRQLALETID+NKDPYFMKNHLGSYECKLCL
Sbjct:     1 MDFQHRPGGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCL 60

Query:    61 TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQSCDE 100
             TLHNNEGSYLAHTQGKKHQ NLARRAAKEAK+AP Q   E
Sbjct:    61 TLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPE 100

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q15428 SF3A2 "Splicing factor 3A subunit 2" [Homo sapiens (taxid:9606)]

 Score = 474 (171.9 bits), Expect = 5.3e-71, Sum P(2) = 5.3e-71
 Identities = 89/100 (89%), Positives = 93/100 (93%)

Query:     1 MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
             MD+Q+RPGGKTG GGVAS SESNRDRRERLRQLALETID+NKDPYFMKNHLGSYECKLCL
Sbjct:     1 MDFQHRPGGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCL 60

Query:    61 TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQSCDE 100
             TLHNNEGSYLAHTQGKKHQ NLARRAAKEAK+AP Q   E
Sbjct:    61 TLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPE 100

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0030532 "small nuclear ribonucleoprotein complex" evidence=TAS

GO:0000389 "mRNA 3'-splice site recognition" evidence=TAS

GO:0005681 "spliceosomal complex" evidence=IDA

GO:0006397 "mRNA processing" evidence=IMP

GO:0005654 "nucleoplasm" evidence=TAS

GO:0008380 "RNA splicing" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

UNIPROTKB|E2QXZ1 SF3A2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 474 (171.9 bits), Expect = 1.4e-70, Sum P(2) = 1.4e-70
 Identities = 89/100 (89%), Positives = 93/100 (93%)

Query:     1 MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
             MD+Q+RPGGKTG GGVAS SESNRDRRERLRQLALETID+NKDPYFMKNHLGSYECKLCL
Sbjct:     1 MDFQHRPGGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCL 60

Query:    61 TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQSCDE 100
             TLHNNEGSYLAHTQGKKHQ NLARRAAKEAK+AP Q   E
Sbjct:    61 TLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPE 100

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

ZFIN|ZDB-GENE-040426-897 sf3a2 "splicing factor 3a, subunit 2" [Danio rerio (taxid:7955)]

 Score = 467 (169.5 bits), Expect = 2.9e-70, Sum P(2) = 2.9e-70
 Identities = 88/100 (88%), Positives = 93/100 (93%)

Query:     1 MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
             MD+Q+R GGKTG GGVAS SESNRDRRERLRQLALETID+NKDPYFMKNHLGSYECKLCL
Sbjct:     1 MDFQHRAGGKTGSGGVASASESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCL 60

Query:    61 TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQSCDE 100
             TLHNNEGSYLAHTQGKKHQ+NLARRAAKEAK+AP Q   E
Sbjct:    61 TLHNNEGSYLAHTQGKKHQSNLARRAAKEAKEAPAQPAPE 100

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

WB|WBGene00008683 repo-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 418 (152.2 bits), Expect = 2.9e-64, Sum P(2) = 2.9e-64
 Identities = 77/94 (81%), Positives = 85/94 (90%)

Query:     1 MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
             MD+QNR GGKTG GGVAS +++  DRRERLRQLALETIDL KDPYFM+NH+G+YECKLCL
Sbjct:     1 MDFQNRAGGKTGSGGVASAADAGVDRRERLRQLALETIDLQKDPYFMRNHIGTYECKLCL 60

Query:    61 TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAP 94
             TLHNNEGSYLAHTQGKKHQANLARRAAKE  + P
Sbjct:    61 TLHNNEGSYLAHTQGKKHQANLARRAAKEQSEQP 94

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0002009 "morphogenesis of an epithelium" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0071688 "striated muscle myosin thick filament assembly" evidence=IMP

GO:0007281 "germ cell development" evidence=IMP

GO:0018991 "oviposition" evidence=IMP

UNIPROTKB|Q19335 repo-1 "Protein REPO-1" [Caenorhabditis elegans (taxid:6239)]

 Score = 418 (152.2 bits), Expect = 2.9e-64, Sum P(2) = 2.9e-64
 Identities = 77/94 (81%), Positives = 85/94 (90%)

Query:     1 MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
             MD+QNR GGKTG GGVAS +++  DRRERLRQLALETIDL KDPYFM+NH+G+YECKLCL
Sbjct:     1 MDFQNRAGGKTGSGGVASAADAGVDRRERLRQLALETIDLQKDPYFMRNHIGTYECKLCL 60

Query:    61 TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAP 94
             TLHNNEGSYLAHTQGKKHQANLARRAAKE  + P
Sbjct:    61 TLHNNEGSYLAHTQGKKHQANLARRAAKEQSEQP 94

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54B65	SF3A2_DICDI	No assigned EC number	0.4848	0.6464	0.8418	yes	N/A
Q15428	SF3A2_HUMAN	No assigned EC number	0.6778	0.6642	0.4008	yes	N/A
Q62203	SF3A2_MOUSE	No assigned EC number	0.6736	0.6642	0.3915	yes	N/A
Q9P7L8	SAP62_SCHPO	No assigned EC number	0.4897	0.7	0.9032	yes	N/A
A5PJN8	SF3A2_BOVIN	No assigned EC number	0.6778	0.6642	0.3899	yes	N/A
Q6AXT8	SF3A2_RAT	No assigned EC number	0.6820	0.6642	0.3949	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	280
COG5246	222	COG5246, PRP11, Splicing factor 3a, subunit 2 [RNA	5e-63
smart01050	129	smart01050, CactinC_cactus, Cactus-binding C-termi	5e-23
smart00451	35	smart00451, ZnF_U1, U1-like zinc finger	3e-08
pfam12874	25	pfam12874, zf-met, Zinc-finger of C2H2 type	2e-05

>gnl|CDD|227571 COG5246, PRP11, Splicing factor 3a, subunit 2 [RNA processing and modification]

 Score =  197 bits (502), Expect = 5e-63
 Identities = 74/243 (30%), Positives = 106/243 (43%), Gaps = 47/243 (19%)

Query: 1   MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCL 60
           M+Y  R G KTGGGG AS  + N+ RR R   L     DL  DPY  KNH G Y C LC 
Sbjct: 1   MNYGGRGGSKTGGGGTASEIKKNKKRRSRQLLLEAYGQDLMDDPYLSKNHTGKYVCLLCK 60

Query: 61  TLHNNEGSYLAHTQGKKHQANLARRAAKEAKDAPQQSCDELLLTSDAVYTHKDSILISTL 120
           T H  E SY+ H +GKKH+ N +RR+ +++    +            +   K S+     
Sbjct: 61  TKHLTEMSYVKHREGKKHKENSSRRSEEKSSLGRENQTTHDFRQQQKIIEAKQSL----- 115

Query: 121 DWGPPAPEKPRVEPKKFVKIGRPGYRVTKQRDPSNGQQSLLFQVDYPEIADDVFPRHRFM 180
                             + G P Y+V    +P  G+                       
Sbjct: 116 -----------------KRSGIPSYKVRSLVEPKGGR----------------------- 135

Query: 181 SAYSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIAFKVSDRT 240
               L  QV+Y +   +  P++R +S+ EQ +E  D  ++YL+FA EPYE IAFK  ++ 
Sbjct: 136 --RGLGIQVNYEDDLAEEMPQYRIVSSLEQNVEEYDESFRYLVFACEPYENIAFKFENKE 193

Query: 241 GLY 243
             +
Sbjct: 194 IDF 196

Length = 222

>gnl|CDD|214996 smart01050, CactinC_cactus, Cactus-binding C-terminus of cactin protein

 Score = 91.3 bits (227), Expect = 5e-23
 Identities = 30/118 (25%), Positives = 39/118 (33%), Gaps = 30/118 (25%)

Query: 127 PEKPRVEPKKFVKIGRPGYRVTK---QRDPSNGQQSLLFQVDYPEIADDVFPRHRFMSAY 183
             KPR   +         Y  T       P    Q   F + YP++ D            
Sbjct: 7   LRKPRYFNRVKTGYDWNKYNQTHYDNDNPPPKIVQGYKFNIFYPDLID------------ 54

Query: 184 SLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLF-AAEPYETIAFKVSDRT 240
                           PR+R  S++E   E PD     L F A  PYE IAFK+ +R 
Sbjct: 55  ------------KGKAPRYRIESSFEI--EKPDDDTCLLRFSAGPPYEDIAFKIVNRE 98

CactinC_cactus is the C-terminal 200 residues of the cactin protein which are necessary for the association of cactin with IkappaB-cactus as one of the intracellular members of the Rel complex. The Rel (NF-kappaB) pathway is conserved in invertebrates and vertebrates. In mammals, it controls the activities of the immune and inflammatory response genes as well as viral genes, and is critical for cell growth and survival. In Drosophila, the Rel pathway functions in the innate cellular and humoral immune response, in muscle development, and in the establishment of dorsal-ventral polarity in the early embryo. Most members of the family also have a Cactin_mid domain further upstream. Length = 129

>gnl|CDD|197732 smart00451, ZnF_U1, U1-like zinc finger

 Score = 48.4 bits (116), Expect = 3e-08
 Identities = 15/34 (44%), Positives = 21/34 (61%)

Query: 52 GSYECKLCLTLHNNEGSYLAHTQGKKHQANLARR 85
          G + CKLC     +E S  AH +GKKH+ N+ +R
Sbjct: 2  GGFYCKLCNVTFTDEISVEAHLKGKKHKKNVKKR 35

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins. Length = 35

>gnl|CDD|205121 pfam12874, zf-met, Zinc-finger of C2H2 type

 Score = 40.6 bits (96), Expect = 2e-05
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 54 YECKLCLTLHNNEGSYLAHTQGKKH 78
          + C+LC     +E    +H +GKKH
Sbjct: 1  FYCELCNVTFTSESQLKSHLRGKKH 25

This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding. Length = 25

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	280
KOG0227|consensus	222		100.0
COG5246	222	PRP11 Splicing factor 3a, subunit 2 [RNA processin	100.0
PF09732	125	CactinC_cactus: Cactus-binding C-terminus of cacti	99.59
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	97.96
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	97.36
KOG2370|consensus	623		96.63
KOG0227|consensus	222		94.45
KOG4727|consensus	193		93.62
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	93.53
PF06220	38	zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc fi	90.13
KOG3032|consensus	264		88.99
PLN02748	468	tRNA dimethylallyltransferase	85.89

>KOG0227|consensus

Probab=100.00  E-value=7.1e-105  Score=705.40  Aligned_cols=210  Identities=74%  Similarity=1.154  Sum_probs=202.3

Q ss_pred             CCCCCCCCCCCCCCcccChhhhhHHHHHHHHHHHhhhhCCCCCCceeccCCcceeeeeeeeeecCCCcceeecccchhhh
Q psy9880           1 MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQA   80 (280)
Q Consensus         1 MDyqnR~GsK~G~GGvAS~s~~n~~RReRlr~LaletiDl~kDPY~~KNHlG~~eCKLClT~H~ne~SYlaHtqGKKHq~   80 (280)
                      ||||||+|||+|||||||+||+|+|||||||+||+|||||.+||||||||+|+||||||||||+|||||++||||||||+
T Consensus         1 md~~~r~GsK~G~ggvAS~se~n~~RrerlrqLaletidl~kDPy~mkNh~G~yeCkLClT~H~ne~Syl~HtqGKKHq~   80 (222)
T KOG0227|consen    1 MDYQNRAGSKTGSGGVASESEFNRDRRERLRQLALETIDLNKDPYFMKNHLGKYECKLCLTLHNNEGSYLAHTQGKKHQT   80 (222)
T ss_pred             CCcccccCccCCCCcccchhhhhHHHHHHHHHHHHhhcccccCchhhhccCcceeehhhhhhhcchhhhhhhhccchhhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhccCCccchhhhhhcccccccccccchhcccCCCCCCCCCCCcCCccceeccCCceeEEEeeCCCCCceeE
Q psy9880          81 NLARRAAKEAKDAPQQSCDELLLTSDAVYTHKDSILISTLDWGPPAPEKPRVEPKKFVKIGRPGYRVTKQRDPSNGQQSL  160 (280)
Q Consensus        81 NL~RR~a~e~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~~~KiGrPgYkVtKvrDpet~q~gl  160 (280)
                      |||||+++|+++++..                            +++++..+++|++||||||||||||+|||++||+||
T Consensus        81 Nlarraa~e~k~s~~~----------------------------~~~~k~~v~vk~~vkigrpgykvtk~r~~~~gq~~L  132 (222)
T KOG0227|consen   81 NLARRAAKEAKESPDL----------------------------PQPQKIIVEVKKFVKIGRPGYKVTKQRDPENGQQGL  132 (222)
T ss_pred             HHHHHHHHHhhcCccc----------------------------cccccchhhhhhhhhcCCCcceeeeeecCccCceee
Confidence            9999999999997732                            556677888999999999999999999999999999


Q ss_pred             EEEEeCCCccccccccccchhhhhhhcccCCcCccCCCCCceeeeeccccccCCCCCCceEEEEEeCCCcccceeecCCc
Q psy9880         161 LFQVDYPEIADDVFPRHRFMSAYSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIAFKVSDRT  240 (280)
Q Consensus       161 lfqV~Ypei~~~~~p~~r~ms~y~l~~~~~~~e~~~~~~P~~RfmSa~Eq~vE~~d~~~QYLviAaEPYEtIafkIPn~e  240 (280)
                      +|||+||+|++                         +.+|+|||||+|||.+|+||++|||||||||||||||||||++|
T Consensus       133 ~fQv~Yp~i~~-------------------------~~~Pr~rfmssyeq~ve~~dk~~qyLvfaaePyE~Iafk~p~~E  187 (222)
T KOG0227|consen  133 LFQVNYPEIEE-------------------------GIMPRHRFMSSYEQKVEPPDKSWQYLVFAAEPYENIAFKVPSRE  187 (222)
T ss_pred             EEEecchhhhh-------------------------ccCCcchhhhhhHhhcCCccccceEEEEEeccccceeeecCchh
Confidence            99999999987                         68999999999999999999999999999999999999999999


Q ss_pred             c---------ceecCCCeEEEEEEEeecCCCc
Q psy9880         241 G---------LYERITSGLVLVDHVKLTCQNQ  263 (280)
Q Consensus       241 I---------~WD~dtK~f~lQ~~Fk~~~~~~  263 (280)
                      |         |||.+||+|+|||+|+.+.+.+
T Consensus       188 id~se~Kf~t~wd~~tk~y~lqF~fk~~~~~~  219 (222)
T KOG0227|consen  188 IDKSEGKFWTHWDAETKQYTLQFFFKQAEPEQ  219 (222)
T ss_pred             hhhccCceeeeecCCCceEEEEEEecccCccC
Confidence            9         9999999999999999888765

>COG5246 PRP11 Splicing factor 3a, subunit 2 [RNA processing and modification]

Probab=100.00  E-value=9.1e-81  Score=549.69  Aligned_cols=213  Identities=35%  Similarity=0.561  Sum_probs=189.2

Q ss_pred             CCCCCCCCCCCCCCcccChhhhhHHHHHHHHHHHhhhhCCCCCCceeccCCcceeeeeeeeeecCCCcceeecccchhhh
Q psy9880           1 MDYQNRPGGKTGGGGVASWSESNRDRRERLRQLALETIDLNKDPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQA   80 (280)
Q Consensus         1 MDyqnR~GsK~G~GGvAS~s~~n~~RReRlr~LaletiDl~kDPY~~KNHlG~~eCKLClT~H~ne~SYlaHtqGKKHq~   80 (280)
                      |||++|+|||+|+||+||.++.|.+||+|++.|+++++||.+|||+||||+|+|||+||+|+|+||+||++|++||||++
T Consensus         1 Mny~~r~Gsk~Gggg~Ase~~~n~~rR~r~~~L~~~gqDl~dDPyl~knh~Gk~vC~LC~T~H~~e~Sy~~H~~GKKH~~   80 (222)
T COG5246           1 MNYGGRGGSKTGGGGTASEIKKNKKRRSRQLLLEAYGQDLMDDPYLSKNHTGKYVCLLCKTKHLTEMSYVKHREGKKHKE   80 (222)
T ss_pred             CCcccccccccCCCcchhHHHhhHHHHHHHHHHHhcCcccccCcchhhcCCCcEEeeeeccccccHHHHHHhhccchhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhccCCccchhhhhhcccccccccccchhcccCCCCCCCCCCCcC-CccceeccCCceeEEEeeCCCCCcee
Q psy9880          81 NLARRAAKEAKDAPQQSCDELLLTSDAVYTHKDSILISTLDWGPPAPEKPRVE-PKKFVKIGRPGYRVTKQRDPSNGQQS  159 (280)
Q Consensus        81 NL~RR~a~e~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~k~~~KiGrPgYkVtKvrDpet~q~g  159 (280)
                      |++||.+.+.+-+....+.-++.++|                       .-++ ++..+++|+|+|||.+++.|+.|..|
T Consensus        81 n~~rrs~eksslgrEnqtthdfrqqQ-----------------------kiieaKqSlk~~GiP~ykv~~~~epk~G~~G  137 (222)
T COG5246          81 NSSRRSEEKSSLGRENQTTHDFRQQQ-----------------------KIIEAKQSLKRSGIPSYKVRSLVEPKGGRRG  137 (222)
T ss_pred             hHHHHHHHhhcccccCCchhhhhhHH-----------------------HHHHHHHHHHhcCCCceeEEEeecCCCCcee
Confidence            99999665544433221221222221                       1223 44556999999999999999999999


Q ss_pred             EEEEEeCCCccccccccccchhhhhhhcccCCcCccCCCCCceeeeeccccccCCCCCCceEEEEEeCCCcccceeecCC
Q psy9880         160 LLFQVDYPEIADDVFPRHRFMSAYSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIAFKVSDR  239 (280)
Q Consensus       160 llfqV~Ypei~~~~~p~~r~ms~y~l~~~~~~~e~~~~~~P~~RfmSa~Eq~vE~~d~~~QYLviAaEPYEtIafkIPn~  239 (280)
                      |.|||+||++..                         .++|++||||+|||++|.+|+++||||||||||||||||||+.
T Consensus       138 l~iqvnY~Dd~a-------------------------~~~P~yRivs~lEq~ve~~d~~f~yLV~a~ePyEnIafk~~~~  192 (222)
T COG5246         138 LGIQVNYEDDLA-------------------------EEMPQYRIVSSLEQNVEEYDESFRYLVFACEPYENIAFKFENK  192 (222)
T ss_pred             eEEEEeccchhh-------------------------ccCcceehhhhhhhcchhhcccceEEEEEeccccceeeecCCC
Confidence            999999998765                         5799999999999999999999999999999999999999999


Q ss_pred             cc-------ceecCCCeEEEEEEEeecCC
Q psy9880         240 TG-------LYERITSGLVLVDHVKLTCQ  261 (280)
Q Consensus       240 eI-------~WD~dtK~f~lQ~~Fk~~~~  261 (280)
                      ||       +||..|+.|+|||||+...+
T Consensus       193 ei~f~s~~~~wDa~~~tYt~qFff~~a~~  221 (222)
T COG5246         193 EIDFLSIYEDWDAETGTYTLQFFFLEAGP  221 (222)
T ss_pred             ccchhhhcccccccCceEEEEEeeecccC
Confidence            99       99999999999999997654

>PF09732 CactinC_cactus: Cactus-binding C-terminus of cactin protein; InterPro: IPR019134 This entry represents the C-terminal 200 residues of the cactin protein which is necessary for the association of cactin with IkappaB-cactus, as one of the intracellular members of the Rel complex

Probab=99.59  E-value=4.4e-15  Score=124.82  Aligned_cols=76  Identities=32%  Similarity=0.449  Sum_probs=64.1

Q ss_pred             CCCCCceeEEEEEeCCCccccccccccchhhhhhhcccCCcCccCCCCCceeeeeccccccCCCCCCceEEEE-EeCCCc
Q psy9880         152 DPSNGQQSLLFQVDYPEIADDVFPRHRFMSAYSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLF-AAEPYE  230 (280)
Q Consensus       152 Dpet~q~gllfqV~Ypei~~~~~p~~r~ms~y~l~~~~~~~e~~~~~~P~~RfmSa~Eq~vE~~d~~~QYLvi-AaEPYE  230 (280)
                      .|-.-.+|+.|+|.||++.+.                        +..|.+|||+     + +.++.+|+|+| |++|||
T Consensus        35 pPPK~vqGYkFnIfYPdL~d~------------------------~~~P~y~i~~-----~-~~~~~~~~L~F~AgpPYe   84 (125)
T PF09732_consen   35 PPPKIVQGYKFNIFYPDLIDK------------------------SKTPRYRIEP-----D-EDNPDFCILRFHAGPPYE   84 (125)
T ss_pred             CCCceeeeeEEEEECCcccCC------------------------CCCCcEEEEE-----C-CCCCCEEEEEEeCCCCCc
Confidence            455667999999999999763                        5689999999     2 33799999999 569999


Q ss_pred             ccceeecCCcc----------ceecCCCeEEEEEEEeec
Q psy9880         231 TIAFKVSDRTG----------LYERITSGLVLVDHVKLT  259 (280)
Q Consensus       231 tIafkIPn~eI----------~WD~dtK~f~lQ~~Fk~~  259 (280)
                      .|||+|+|+|+          .||.  ..|.|+|.||..
T Consensus        85 DIAFkIvnrEWd~s~k~Gfr~~Fd~--gilqL~F~FKr~  121 (125)
T PF09732_consen   85 DIAFKIVNREWDYSHKRGFRCSFDR--GILQLYFNFKRY  121 (125)
T ss_pred             CEEEEEecCeeecCCCCCceEEeeC--CEEEEEEEEEhh
Confidence            99999999998          6665  689999999854

The Rel (NF-kappaB) pathway is conserved in invertebrates and vertebrates. In mammals, it controls the activities of the immune and inflammatory response genes as well as viral genes, and is critical for cell growth and survival. In Drosophila, the Rel pathway functions in the innate cellular and humoral immune response, in muscle development and in the establishment of dorsal-ventral polarity in the early embryo []. Most members of the family also have the conserved mid region of cactin (IPR018816 from INTERPRO) further upstream.

>smart00451 ZnF_U1 U1-like zinc finger

Probab=97.96  E-value=1.3e-06  Score=56.28  Aligned_cols=34  Identities=41%  Similarity=0.692  Sum_probs=31.8

Q ss_pred             CcceeeeeeeeeecCCCcceeecccchhhhhHHH
Q psy9880          51 LGSYECKLCLTLHNNEGSYLAHTQGKKHQANLAR   84 (280)
Q Consensus        51 lG~~eCKLClT~H~ne~SYlaHtqGKKHq~NL~R   84 (280)
                      .|.|-|.+|++...+..++..|+.||+|..|+++
T Consensus         1 ~~~~~C~~C~~~~~~~~~~~~H~~gk~H~~~~~~   34 (35)
T smart00451        1 TGGFYCKLCNVTFTDEISVEAHLKGKKHKKNVKK   34 (35)
T ss_pred             CcCeEccccCCccCCHHHHHHHHChHHHHHHHHc
Confidence            3789999999999999999999999999999976

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=97.36  E-value=1.9e-05  Score=47.78  Aligned_cols=25  Identities=32%  Similarity=0.643  Sum_probs=24.3

Q ss_pred             eeeeeeeeeecCCCcceeecccchh
Q psy9880          54 YECKLCLTLHNNEGSYLAHTQGKKH   78 (280)
Q Consensus        54 ~eCKLClT~H~ne~SYlaHtqGKKH   78 (280)
                      |.|.+|+..-.++.+|..|++||||
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~~H   25 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSKKH   25 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTHHH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcCCC
Confidence            6899999999999999999999999

>KOG2370|consensus

Probab=96.63  E-value=0.0017  Score=65.99  Aligned_cols=72  Identities=26%  Similarity=0.303  Sum_probs=48.7

Q ss_pred             ceeEEEEEeCCCccccccccccchhhhhhhcccCCcCccCCCCCceeeeeccccccCCCCCCceEEEEEeCCCcccceee
Q psy9880         157 QQSLLFQVDYPEIADDVFPRHRFMSAYSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPPDRKWQYLLFAAEPYETIAFKV  236 (280)
Q Consensus       157 q~gllfqV~Ypei~~~~~p~~r~ms~y~l~~~~~~~e~~~~~~P~~RfmSa~Eq~vE~~d~~~QYLviAaEPYEtIafkI  236 (280)
                      -+|.-|.|-||++-+.                        +..|.++|-+.-.    +.|-+ --=..|.+|||.|||+|
T Consensus       538 VQGYkFNIFYPDLidk------------------------~~aP~y~ie~~~d----~~d~c-iIRF~aGpPYeDIAFkI  588 (623)
T KOG2370|consen  538 VQGYKFNIFYPDLIDK------------------------GRAPTYRIERCRD----KNDFC-IIRFHAGPPYEDIAFKI  588 (623)
T ss_pred             hcceeecccchhhhcc------------------------ccCCeeeeeecCC----CCceE-EEEeccCCcchhhhhhh
Confidence            4799999999988653                        6789999876621    11222 12246899999999999


Q ss_pred             cCCcc--------ceecCCCeEEEEEEEe
Q psy9880         237 SDRTG--------LYERITSGLVLVDHVK  257 (280)
Q Consensus       237 Pn~eI--------~WD~dtK~f~lQ~~Fk  257 (280)
                      =|+|.        -=-.++..|.|=|+||
T Consensus       589 VnkeWeyshKrGfKcqF~ngvlqL~F~FK  617 (623)
T KOG2370|consen  589 VNKEWEYSHKRGFKCQFDNGVLQLWFRFK  617 (623)
T ss_pred             hcchhhhhhhcCccceeeCCeeeeeehhh
Confidence            99986        1122344555555555

>KOG0227|consensus

Probab=94.45  E-value=0.012  Score=53.98  Aligned_cols=26  Identities=46%  Similarity=0.718  Sum_probs=23.2

Q ss_pred             ccccchhhhh------------hhcccCCcCccCCCCC
Q psy9880         175 PRHRFMSAYS------------LLFQVDYPEIADDVFP  200 (280)
Q Consensus       175 p~~r~ms~y~------------l~~~~~~~e~~~~~~P  200 (280)
                      |+|||||+|+            |+|+++|+|+|+...|
T Consensus       147 Pr~rfmssyeq~ve~~dk~~qyLvfaaePyE~Iafk~p  184 (222)
T KOG0227|consen  147 PRHRFMSSYEQKVEPPDKSWQYLVFAAEPYENIAFKVP  184 (222)
T ss_pred             CcchhhhhhHhhcCCccccceEEEEEeccccceeeecC
Confidence            8999999998            9999999999966555

>KOG4727|consensus

Probab=93.62  E-value=0.025  Score=51.14  Aligned_cols=40  Identities=33%  Similarity=0.602  Sum_probs=34.6

Q ss_pred             CceeccCCcceeeeeeeeeecCCCcceeecccchhhhhHH
Q psy9880          44 PYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQANLA   83 (280)
Q Consensus        44 PY~~KNHlG~~eCKLClT~H~ne~SYlaHtqGKKHq~NL~   83 (280)
                      |-+-+--.|.|=|..|+-+--.--+||-|+.||+||-||.
T Consensus        66 k~tp~sq~~GyyCdVCdcvvKDSinflDHiNgKkHqrnlg  105 (193)
T KOG4727|consen   66 KSTPRSQKGGYYCDVCDCVVKDSINFLDHINGKKHQRNLG  105 (193)
T ss_pred             cCCcccccCceeeeecceeehhhHHHHHHhccHHHHHHHh
Confidence            3444556799999999999888899999999999999985

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=93.53  E-value=0.011  Score=36.81  Aligned_cols=27  Identities=26%  Similarity=0.566  Sum_probs=24.9

Q ss_pred             ceeeeeeeeeecCCCcceeecccchhh
Q psy9880          53 SYECKLCLTLHNNEGSYLAHTQGKKHQ   79 (280)
Q Consensus        53 ~~eCKLClT~H~ne~SYlaHtqGKKHq   79 (280)
                      .|.|.+|.-.=.++..+..|..||+|+
T Consensus         1 q~~C~~C~k~f~~~~~~~~H~~sk~Hk   27 (27)
T PF12171_consen    1 QFYCDACDKYFSSENQLKQHMKSKKHK   27 (27)
T ss_dssp             -CBBTTTTBBBSSHHHHHCCTTSHHHH
T ss_pred             CCCcccCCCCcCCHHHHHHHHccCCCC
Confidence            478999999999999999999999996

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=90.13  E-value=0.083  Score=36.27  Aligned_cols=33  Identities=30%  Similarity=0.584  Sum_probs=19.8

Q ss_pred             ceeeeeeeeeecCCC-cc-eeecccchhhhhHHHH
Q psy9880          53 SYECKLCLTLHNNEG-SY-LAHTQGKKHQANLARR   85 (280)
Q Consensus        53 ~~eCKLClT~H~ne~-SY-laHtqGKKHq~NL~RR   85 (280)
                      +|=|.-|.+.=++.+ |. ..|..|+||+.|+++.
T Consensus         3 ryyCdyC~~~~~~d~~~~Rk~H~~G~kH~~nv~~~   37 (38)
T PF06220_consen    3 RYYCDYCKKYLTHDSPSIRKQHERGWKHKENVKRY   37 (38)
T ss_dssp             S-B-TTT--B-S--SHHHHHHHT--THHHHHHHHH
T ss_pred             CeecccccceecCCChHHHHHhhccHHHHHHHHHh
Confidence            577999999876665 44 8999999999999864

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.

>KOG3032|consensus

Probab=88.99  E-value=0.15  Score=47.99  Aligned_cols=49  Identities=20%  Similarity=0.298  Sum_probs=38.7

Q ss_pred             hhhCCCCCCc-eeccCCcceeeeeeeeeecCCCcceeecccchhhhhHHHH
Q psy9880          36 ETIDLNKDPY-FMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQANLARR   85 (280)
Q Consensus        36 etiDl~kDPY-~~KNHlG~~eCKLClT~H~ne~SYlaHtqGKKHq~NL~RR   85 (280)
                      .+-|+.-||= .--|-+|.+.|.+|++-=- ++=.-.|..||||..+++.-
T Consensus        17 kk~~~ri~splakyn~sgql~C~vCn~piK-p~lW~vHvnsKkHre~id~l   66 (264)
T KOG3032|consen   17 KKKDTRIDSPLAKYNESGQLVCRVCNVPIK-PSLWDVHVNSKKHREAIDSL   66 (264)
T ss_pred             cCcccccccHhhccCCCCCeeEEEecCccc-HHHHHHHhccHHHHHHHHHH
Confidence            3455555544 4458999999999999766 88888999999999998764

>PLN02748 tRNA dimethylallyltransferase

Probab=85.89  E-value=0.26  Score=49.74  Aligned_cols=36  Identities=22%  Similarity=0.487  Sum_probs=31.8

Q ss_pred             cceeeeeeee-eecCCCcceeecccchhhhhHHHHHH
Q psy9880          52 GSYECKLCLT-LHNNEGSYLAHTQGKKHQANLARRAA   87 (280)
Q Consensus        52 G~~eCKLClT-~H~ne~SYlaHtqGKKHq~NL~RR~a   87 (280)
                      =.|+|.+|.. +.+.|-....|++||+|.-++.+...
T Consensus       417 ~~~~Ce~C~~~~~~G~~eW~~Hlksr~Hk~~~~~~~k  453 (468)
T PLN02748        417 TQYVCEACGNKVLRGAHEWEQHKQGRGHRKRVQRLKQ  453 (468)
T ss_pred             ccccccCCCCcccCCHHHHHHHhcchHHHHHHhHHHh
Confidence            5689999998 78899999999999999999887653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	280
4dgw_C	231	PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A	2e-32

>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces cerevisiae} Length = 231

 Score =  118 bits (296), Expect = 2e-32
 Identities = 20/108 (18%), Positives = 34/108 (31%), Gaps = 19/108 (17%)

Query: 156 GQQSLLFQVDYPEIADDVFPRHRFMSAYSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPP 215
           G   +  QV+Y     +                    +    V P  R +S  E      
Sbjct: 114 GSVGMAIQVNYSSEVKE---------------NSVDSDDKAKVPPLIRIVSGLELSDTKQ 158

Query: 216 DRKWQYLLFAAEPYETIAFKVSDR---TGLYERITSGLVLVDHVKLTC 260
             K ++L+ A EP+E IA ++            + +    VD +   C
Sbjct: 159 KGK-KFLVIAYEPFENIAIELPPNEILFSENNDMDNNNDGVDELNKKC 205

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	280
4dgw_C	231	PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A	100.0
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	95.79
4dgw_C	231	PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A	95.76
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	94.95
3cw1_L	77	U1 small nuclear ribonucleoprotein C; PRE-mRNA spl	94.89
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	91.21
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	80.65

>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-44  Score=320.41  Aligned_cols=110  Identities=22%  Similarity=0.294  Sum_probs=89.6

Q ss_pred             ceeccCCceeEEEeeCCCCCceeEEEEEeCCC-ccccccccccchhhhhhhcccCCcCccCCCCCceeeeeccccccCCC
Q psy9880         137 FVKIGRPGYRVTKQRDPSNGQQSLLFQVDYPE-IADDVFPRHRFMSAYSLLFQVDYPEIADDVFPRHRFMSAYEQRIEPP  215 (280)
Q Consensus       137 ~~KiGrPgYkVtKvrDpet~q~gllfqV~Ype-i~~~~~p~~r~ms~y~l~~~~~~~e~~~~~~P~~RfmSa~Eq~vE~~  215 (280)
                      ...||||||||||+|||+|+|.||||||+||+ |+++           .    .+..+.. ++.|+|||||+|||++|+|
T Consensus        95 ~~~IGRPGYKVTKVRDPETgQ~GLLFQVdYPEeIk~~-----------~----~~~~~~e-gi~PrhRIMSAyEQrVE~P  158 (231)
T 4dgw_C           95 XXXXXXXXXXXXXXXXXXXGSVGMAIQVNYSSEVKEN-----------S----VDSDDKA-KVPPLIRIVSGLELSDTKQ  158 (231)
T ss_dssp             SCCCCCCCCBCCCEECCBCCBCCEEEEEECCCSSSTT-----------S----CCSCSST-TCCCEEEEEETTCCSSCCC
T ss_pred             ccccccccccccccccccCCCeeEEEEEECChhhhhc-----------c----cccccCC-CCCcCEEEECHHHhcccCC
Confidence            34899999999999999999999999999998 7553           1    1223333 7899999999999999999


Q ss_pred             CCCceEEEEEeCCCcccceeecCCcc-----------------------ceecCCCeEEEEEEEeecCCCc
Q psy9880         216 DRKWQYLLFAAEPYETIAFKVSDRTG-----------------------LYERITSGLVLVDHVKLTCQNQ  263 (280)
Q Consensus       216 d~~~QYLviAaEPYEtIafkIPn~eI-----------------------~WD~dtK~f~lQ~~Fk~~~~~~  263 (280)
                       ++||||||||||||||||||||+||                       |||+|+|+|+||||||...|.|
T Consensus       159 -Kd~QYLVIAAEPYETIAFKIPNrEIDk~e~~~~~~~~~svDElgKfwTyWD~DsK~FyLQffFK~~~~~~  228 (231)
T 4dgw_C          159 -KGKKFLVIAYEPFENIAIELPPNEILFSENNDMDNNNDGVDELNKKCTFWDAISKLYYVQFFFKQAEQEQ  228 (231)
T ss_dssp             -CCCEEEEEECSSSCCBCCEECSSCSSCCSCCSCCCCCCSSCHHHHHTEEEETTTTEEEEC----------
T ss_pred             -CCCEEEEEEeCCCCCceeEcCChhhccccccccccccccccccCCEEEEecCCCCEEEEEEEEeehhhhh
Confidence             9999999999999999999999999                       8999999999999999666554

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=95.79  E-value=0.0013  Score=53.26  Aligned_cols=38  Identities=26%  Similarity=0.275  Sum_probs=34.4

Q ss_pred             ccCCcceeeeeeeeeecCCCcceeecccchhhhhHHHH
Q psy9880          48 KNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQANLARR   85 (280)
Q Consensus        48 KNHlG~~eCKLClT~H~ne~SYlaHtqGKKHq~NL~RR   85 (280)
                      ..-.+.|.|.||+..=+++..+..|..||+|..||.+.
T Consensus        88 ~~~~~~~~C~~C~~~f~s~~~~~~H~~gk~H~~~~~~~  125 (127)
T 1zu1_A           88 DGEDRSKCCPVCNMTFSSPVVAESHYIGKTHIKNLRLR  125 (127)
T ss_dssp             SCCCTTTEETTTTEECSSHHHHHHHHTSHHHHHHHHHH
T ss_pred             cCCCCCeEcCCCCCEeCCHHHHHHHHCCHHHHHHHHHh
Confidence            34467899999999999999999999999999999876

>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces cerevisiae}

Probab=95.76  E-value=0.0017  Score=58.46  Aligned_cols=36  Identities=19%  Similarity=0.146  Sum_probs=29.7

Q ss_pred             ccccccccccchhhhh-----------hhcccCCcCccCCCCCceee
Q psy9880         169 IADDVFPRHRFMSAYS-----------LLFQVDYPEIADDVFPRHRF  204 (280)
Q Consensus       169 i~~~~~p~~r~ms~y~-----------l~~~~~~~e~~~~~~P~~Rf  204 (280)
                      -++.+.|||||||+||           |+++++|+|+++...|-.-|
T Consensus       137 ~~egi~PrhRIMSAyEQrVE~PKd~QYLVIAAEPYETIAFKIPNrEI  183 (231)
T 4dgw_C          137 DKAKVPPLIRIVSGLELSDTKQKGKKFLVIAYEPFENIAIELPPNEI  183 (231)
T ss_dssp             SSTTCCCEEEEEETTCCSSCCCCCCEEEEEECSSSCCBCCEECSSCS
T ss_pred             cCCCCCcCEEEECHHHhcccCCCCCEEEEEEeCCCCCceeEcCChhh
Confidence            3556799999999999           78999999999777775443

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=94.95  E-value=0.0032  Score=50.84  Aligned_cols=34  Identities=35%  Similarity=0.569  Sum_probs=31.7

Q ss_pred             eeeeeeeeeecCCCcceeecccchhhhhHHHHHH
Q psy9880          54 YECKLCLTLHNNEGSYLAHTQGKKHQANLARRAA   87 (280)
Q Consensus        54 ~eCKLClT~H~ne~SYlaHtqGKKHq~NL~RR~a   87 (280)
                      +.|++|+..=++++...+|.+||||..||.+...
T Consensus        33 ~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~   66 (127)
T 1zu1_A           33 TQCKVCSAVLISESQKLAHYQSRKHANKVRRYMA   66 (127)
T ss_dssp             SEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             CcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhc
Confidence            7999999999999999999999999999987754

>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A

Probab=94.89  E-value=0.0045  Score=47.72  Aligned_cols=35  Identities=23%  Similarity=0.442  Sum_probs=29.3

Q ss_pred             cceeeeeeeeee--cCCCcceeecccchhhhhHHHHH
Q psy9880          52 GSYECKLCLTLH--NNEGSYLAHTQGKKHQANLARRA   86 (280)
Q Consensus        52 G~~eCKLClT~H--~ne~SYlaHtqGKKHq~NL~RR~   86 (280)
                      .+|=|+-|.+.=  -+-++...|.+|+||+.|+++-=
T Consensus         2 PkYyCdYCd~~lt~Ds~s~Rk~H~~G~kH~~nv~~yy   38 (77)
T 3cw1_L            2 PKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYY   38 (77)
T ss_pred             CCcccccCCceecCCCHHHHHHHHccHHHHHHHHHHH
Confidence            578899999974  55566799999999999999864

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=91.21  E-value=0.057  Score=52.02  Aligned_cols=39  Identities=23%  Similarity=0.534  Sum_probs=33.6

Q ss_pred             cceeeeeeee------eecCCCcceeecccchhhhhHHHHHHHHh
Q psy9880          52 GSYECKLCLT------LHNNEGSYLAHTQGKKHQANLARRAAKEA   90 (280)
Q Consensus        52 G~~eCKLClT------~H~ne~SYlaHtqGKKHq~NL~RR~a~e~   90 (280)
                      -.|.|.+|..      +.+.|-....|+.||+|.-||.++..+.+
T Consensus       359 ~~~~Ce~C~~~~~~~~~~~ge~~W~~H~ksr~Hk~~~~~~~k~~~  403 (409)
T 3eph_A          359 THYTCNVCRNADGKNVVAIGEKYWKIHLGSRRHKSNLKRNTRQAD  403 (409)
T ss_dssp             CEEEEEEEECTTSCEEEEESHHHHHHHHTSHHHHHHHHHHHHHHH
T ss_pred             cceeCCCCCCCCCCcceEEcHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            3589999998      78888899999999999999988865544

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=80.65  E-value=0.23  Score=40.93  Aligned_cols=37  Identities=19%  Similarity=0.289  Sum_probs=32.6

Q ss_pred             ccCCcceeeeeeeeeecCCCcceeecccchhhhhHHH
Q psy9880          48 KNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQANLAR   84 (280)
Q Consensus        48 KNHlG~~eCKLClT~H~ne~SYlaHtqGKKHq~NL~R   84 (280)
                      ..-.|.|.|..|...=.+.+++.+|..+|+|.-++.+
T Consensus        45 ~tGekpfyC~~C~K~F~~~~~L~~H~rsK~HKrrvk~   81 (124)
T 1zr9_A           45 LPGGGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQ   81 (124)
T ss_dssp             SGGGGCSEETTTTEECSSHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCcceEcccCcchhCCHHHHHHHHhhhhhhHHHHH
Confidence            3456789999999999999999999999999877654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	280
d1zu1a2	55	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	95.84
d1zu1a1	72	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	94.34
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	89.83
d2vrda1	61	Spliceosomal protein U1C {Human (Homo sapiens) [Ta	86.31

>d1zu1a2 g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=95.84  E-value=0.00048  Score=48.65  Aligned_cols=32  Identities=28%  Similarity=0.364  Sum_probs=30.0

Q ss_pred             eeeeeeeeecCCCcceeecccchhhhhHHHHH
Q psy9880          55 ECKLCLTLHNNEGSYLAHTQGKKHQANLARRA   86 (280)
Q Consensus        55 eCKLClT~H~ne~SYlaHtqGKKHq~NL~RR~   86 (280)
                      -|+||+.+-+|..-..+|-+||+|..||.+|.
T Consensus        23 ~C~lCn~~Fns~~~AqsHY~GK~H~K~lk~~~   54 (55)
T d1zu1a2          23 CCPVCNMTFSSPVVAESHYIGKTHIKNLRLRE   54 (55)
T ss_dssp             EETTTTEECSSHHHHHHHHTSHHHHHHHHHHH
T ss_pred             hhhhhhcccCCHHHHHHHhhhhHHHHHHHHhc
Confidence            59999999999999999999999999998873

>d1zu1a1 g.37.1.4 (A:2-73) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=94.34  E-value=0.0047  Score=45.35  Aligned_cols=49  Identities=29%  Similarity=0.502  Sum_probs=38.1

Q ss_pred             HHHHHHHHhhhhCCCCCCceeccCCcceeeeeeeeeecCCCcceeecccchhhhhHHHH
Q psy9880          27 RERLRQLALETIDLNKDPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQANLARR   85 (280)
Q Consensus        27 ReRlr~LaletiDl~kDPY~~KNHlG~~eCKLClT~H~ne~SYlaHtqGKKHq~NL~RR   85 (280)
                      ||-|.++-.|.-+|-.|-          -||+|+.+-++|+-=++|-+||||-.|+.+=
T Consensus        16 ~e~v~~~iqe~~~lFtd~----------~CkvC~a~L~seSQriaHYeskkHa~kvr~y   64 (72)
T d1zu1a1          16 KDAVNSLIRENSHIFSDT----------QCKVCSAVLISESQKLAHYQSRKHANKVRRY   64 (72)
T ss_dssp             HHHHHHHHHHTTTTBCSS----------EETTTTEECCSHHHHHHHHHCHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhcchh----------hHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555555543          4999999999999999999999999998654

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.83  E-value=0.02  Score=41.22  Aligned_cols=35  Identities=20%  Similarity=0.334  Sum_probs=31.6

Q ss_pred             CCcceeeeeeeeeecCCCcceeecccchhhhhHHH
Q psy9880          50 HLGSYECKLCLTLHNNEGSYLAHTQGKKHQANLAR   84 (280)
Q Consensus        50 HlG~~eCKLClT~H~ne~SYlaHtqGKKHq~NL~R   84 (280)
                      -+|.|-|-.|...=.|+.++..|..+|||.-+|.+
T Consensus        12 G~gqfYCv~C~K~F~se~~l~~H~ksKkHKrrvk~   46 (67)
T d1zr9a1          12 GGGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQ   46 (67)
T ss_dssp             GGGCSEETTTTEECSSHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCEEecccccCccCCHHHHHHHHcccHHHHHHHH
Confidence            37999999999999999999999999999866554

>d2vrda1 g.37.1.4 (A:1-61) Spliceosomal protein U1C {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Spliceosomal protein U1C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.31  E-value=0.089  Score=37.14  Aligned_cols=35  Identities=26%  Similarity=0.544  Sum_probs=28.7

Q ss_pred             CcceeeeeeeeeecCCC-cc-eeecccchhhhhHHHH
Q psy9880          51 LGSYECKLCLTLHNNEG-SY-LAHTQGKKHQANLARR   85 (280)
Q Consensus        51 lG~~eCKLClT~H~ne~-SY-laHtqGKKHq~NL~RR   85 (280)
                      +++|=|.-|.+.=+..+ |. -.|.+|+||..|+..-
T Consensus         1 MpryyCdYC~~~lt~ds~s~RK~H~~G~kH~~n~~~y   37 (61)
T d2vrda1           1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDY   37 (61)
T ss_dssp             CCSCEETTTTEECSCCSHHHHHHHTCCTHHHHHHHHH
T ss_pred             CCchhhhhhcchhccCChhHHHHHhccHHHHHHHHHH
Confidence            46789999999887554 55 6799999999998765