254780125
prophage antirepressor
GeneID in NCBI database: | 8209100 | Locus tag: | CLIBASIA_00020 |
Protein GI in NCBI database: | 254780125 | Protein Accession: | YP_003064538.1 |
Gene range: | +(2285, 3073) | Protein Length: | 262aa |
Gene description: | prophage antirepressor | ||
COG prediction: | [K] Prophage antirepressor | ||
KEGG prediction: | prophage antirepressor | ||
SEED prediction: | Phage antirepressor protein | ||
Pathway involved in KEGG: | not defined | ||
Subsystem involved in SEED: | - none - | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
Identity | Alignment graph | Length | Definition | E-value | |
Target | 262 | prophage antirepressor [Candidatus Liberibacter asiatic | |||
254780555 | 41 | hypothetical protein CLIBASIA_02210 [Candidatus Li | 4e-07 | ||
254780987 | 110 | hypothetical protein CLIBASIA_04440 [Candidatus Li | 7e-06 |
>gi|254780555|ref|YP_003064968.1| hypothetical protein CLIBASIA_02210 [Candidatus Liberibacter asiaticus str. psy62] Length = 41 | Back alignment |
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Score = 46.6 bits (109), Expect = 4e-07, Method: Composition-based stats. Identities = 19/37 (51%), Positives = 24/37 (64%) Query: 1 MSTITPFEFESNKIRTIVDKDQNIWFVAKDVATALGY 37 MS + PF E N IR +VD+D N WF+ KDVA L + Sbjct: 1 MSDMIPFNLEHNPIRIVVDEDGNYWFMVKDVAGGLDF 37 |
>gi|254780987|ref|YP_003065400.1| hypothetical protein CLIBASIA_04440 [Candidatus Liberibacter asiaticus str. psy62] Length = 110 | Back alignment |
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Score = 42.7 bits (99), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 31/102 (30%), Positives = 55/102 (53%), Gaps = 7/102 (6%) Query: 154 ITGVDQLEAMDIKHLPSSDNDEYLTITQIGERLNPPQRARFLNKLLLKRGLQVSKVSGGY 213 + GV+ L+ ++ LP+ +N Y T TQ+G++L A +NK L + G + + G Sbjct: 4 VLGVNVLQDIN---LPTPNNLPYYTPTQLGKKLATKPSAIKVNKKLREWGFLLEEHESGR 60 Query: 214 RP---TPKGEERGGKMCDVPMQHVEGS-TQQLKWNSNLLVSF 251 + TPKG + GG+ D + +G+ QQ+KW+ ++ S Sbjct: 61 KRDVLTPKGAKGGGRYFDTGKKRSDGTIVQQIKWHPPIVESL 102 |
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 262 | prophage antirepressor [Candidatus Liberibacter asiatic | |||
315121965 | 263 | prophage antirepressor [Candidatus Liberibacter solanac | 1 | 1e-100 | |
315122933 | 264 | prophage antirepressor [Candidatus Liberibacter solanac | 1 | 3e-99 | |
315122913 | 261 | prophage antirepressor [Candidatus Liberibacter solanac | 1 | 2e-65 | |
315121946 | 262 | prophage antirepressor [Candidatus Liberibacter solanac | 1 | 9e-57 | |
255957589 | 100 | hypothetical protein [Candidatus Liberibacter asiaticus | 1 | 5e-51 | |
255957559 | 100 | hypothetical protein [Candidatus Liberibacter asiaticus | 1 | 2e-45 | |
255957554 | 100 | hypothetical protein [Candidatus Liberibacter asiaticus | 1 | 1e-44 | |
71899745 | 251 | BRO, N-terminal [Xylella fastidiosa Ann-1] Length = 251 | 1 | 2e-43 | |
28198899 | 262 | hypothetical protein PD1001 [Xylella fastidiosa Temecul | 1 | 4e-43 | |
71898928 | 387 | BRO, N-terminal [Xylella fastidiosa Ann-1] Length = 387 | 1 | 2e-41 |
>gi|315121965|ref|YP_004062454.1| prophage antirepressor [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 263 | Back alignment and organism information |
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Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 182/251 (72%), Positives = 207/251 (82%), Gaps = 3/251 (1%) Query: 4 ITPFEFESNKIRTIVDKDQNIWFVAKDVATALGYENSNEAINAHCKGVAKRYPLKTEGGI 63 I PFEFESN+IRT+VD+D I FVAKD+A ALGY+NSNEA+N HCKGV KRYPLKT+GGI Sbjct: 6 IIPFEFESNRIRTVVDEDNTILFVAKDIAEALGYKNSNEAVNEHCKGVVKRYPLKTDGGI 65 Query: 64 QKVRIISEPDVYRLLVKSTLPSAQKFERWVFEEVLPTLRKTGSYSVEAPKLRATSASTVL 123 QKVR+I E DVYRL+VKS LPSA+KFERWVFEEVLPTLRKTGSYS++ KL SA+T++ Sbjct: 66 QKVRVILESDVYRLIVKSKLPSAEKFERWVFEEVLPTLRKTGSYSIKPQKL--PSATTIM 123 Query: 124 RVHKHLEELAKQAGLKDNQLLLKVNRGVTKITGVDQLEAMDIKHLPSSDNDEYLTITQIG 183 R HKHLE LAKQAGLKDNQLLLKVNRGVTKITGVDQLE MDIKHL S DNDEYL T+IG Sbjct: 124 RFHKHLEVLAKQAGLKDNQLLLKVNRGVTKITGVDQLEVMDIKHLLSPDNDEYLAPTEIG 183 Query: 184 ERLNPPQRARFLNKLLLKRGLQVSK-VSGGYRPTPKGEERGGKMCDVPMQHVEGSTQQLK 242 + LNP +A+ LN L GLQ+ K G+ PTPKGEE GGKMCDV +QHVEGST LK Sbjct: 184 KSLNPVIKAKALNSWLTYLGLQIPKHTKKGFLPTPKGEELGGKMCDVALQHVEGSTPYLK 243 Query: 243 WNSNLLVSFLQ 253 WN ++V +LQ Sbjct: 244 WNPKVIVPYLQ 254 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|315122933|ref|YP_004063422.1| prophage antirepressor [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 264 | Back alignment and organism information |
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>gi|315122913|ref|YP_004063402.1| prophage antirepressor [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 261 | Back alignment and organism information |
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>gi|315121946|ref|YP_004062435.1| prophage antirepressor [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 262 | Back alignment and organism information |
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>gi|255957589|dbj|BAH96644.1| hypothetical protein [Candidatus Liberibacter asiaticus] Length = 100 | Back alignment and organism information |
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>gi|255957559|dbj|BAH96620.1| hypothetical protein [Candidatus Liberibacter asiaticus] Length = 100 | Back alignment and organism information |
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>gi|255957554|dbj|BAH96616.1| hypothetical protein [Candidatus Liberibacter asiaticus] Length = 100 | Back alignment and organism information |
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>gi|71899745|ref|ZP_00681896.1| BRO, N-terminal [Xylella fastidiosa Ann-1] Length = 251 | Back alignment and organism information |
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>gi|28198899|ref|NP_779213.1| hypothetical protein PD1001 [Xylella fastidiosa Temecula1] Length = 262 | Back alignment and organism information |
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>gi|71898928|ref|ZP_00681095.1| BRO, N-terminal [Xylella fastidiosa Ann-1] Length = 387 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 262 | prophage antirepressor [Candidatus Liberibacter asiatic | ||
pfam02498 | 91 | pfam02498, Bro-N, BRO family, N-terminal domain | 7e-24 | |
COG3617 | 176 | COG3617, COG3617, Prophage antirepressor [Transcription | 1e-32 |
>gnl|CDD|145567 pfam02498, Bro-N, BRO family, N-terminal domain | Back alignment and domain information |
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>gnl|CDD|33416 COG3617, COG3617, Prophage antirepressor [Transcription] | Back alignment and domain information |
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Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 262 | prophage antirepressor [Candidatus Liberibacter asiatic | ||
COG3617 | 176 | Prophage antirepressor [Transcription] | 100.0 | |
pfam02498 | 91 | Bro-N BRO family, N-terminal domain. This family includ | 99.8 | |
pfam10547 | 120 | P22_AR_N P22_AR N-terminal domain. This domain was iden | 97.58 | |
pfam03374 | 112 | ANT Phage antirepressor protein KilAC domain. This doma | 99.41 | |
COG3645 | 135 | Uncharacterized phage-encoded protein [Function unknown | 98.92 | |
PRK11050 | 155 | manganese transport regulator MntR; Provisional | 93.41 | |
PRK03902 | 142 | manganese transport transcriptional regulator; Provisio | 92.87 | |
smart00529 | 96 | HTH_DTXR Helix-turn-helix diphteria tox regulatory elem | 92.1 |
>COG3617 Prophage antirepressor [Transcription] | Back alignment and domain information |
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>pfam02498 Bro-N BRO family, N-terminal domain | Back alignment and domain information |
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>pfam10547 P22_AR_N P22_AR N-terminal domain | Back alignment and domain information |
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>pfam03374 ANT Phage antirepressor protein KilAC domain | Back alignment and domain information |
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>COG3645 Uncharacterized phage-encoded protein [Function unknown] | Back alignment and domain information |
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>PRK11050 manganese transport regulator MntR; Provisional | Back alignment and domain information |
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>PRK03902 manganese transport transcriptional regulator; Provisional | Back alignment and domain information |
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>smart00529 HTH_DTXR Helix-turn-helix diphteria tox regulatory element | Back alignment and domain information |
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Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
No homologous structure with e-value below 0.005
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 262 | prophage antirepressor [Candidatus Liberibacter asiatic | ||
3b73_A | 111 | PHIH1 repressor-like protein; winged-helix-turn-helix, | 93.66 | |
2h09_A | 155 | Transcriptional regulator MNTR; transcription regulator | 93.14 | |
1on2_A | 142 | Transcriptional regulator MNTR; helix-turn-helix, DNA-b | 93.0 | |
2x4h_A | 139 | Hypothetical protein SSO2273; transcription; 2.30A {Sul | 91.83 | |
1fx7_A | 230 | Iron-dependent repressor IDER; DTXR, iron-dependent reg | 92.37 | |
3hrs_A | 214 | Metalloregulator SCAR; DTXR/MNTR family member, transcr | 92.21 | |
2qq9_A | 226 | Diphtheria toxin repressor; regulator, DTXR, helix-turn | 91.12 |
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049} | Back alignment and structure |
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Probab=93.66 E-value=0.13 Score=29.30 Aligned_cols=54 Identities=15% Similarity=0.083 Sum_probs=42.6 Q ss_pred HHCCCCCCCHHHHHHHHCCCCCHHHHHH---HHHHCCCEEECCCCCEEECHHHHHHH Q ss_conf 4155873239999997389988899999---99978976853799443657897543 Q gi|254780125|r 170 SSDNDEYLTITQIGERLNPPQRARFLNK---LLLKRGLQVSKVSGGYRPTPKGEERG 223 (262) Q Consensus 170 ~~~~~~~l~~t~iak~l~~~~sa~~~N~---lL~~~g~q~Rk~~~~W~lt~kg~~~g 223 (262) ++...+..+...||+.+++..|...+.. -|.+.|+..+..++.+.+|.+|+.|- T Consensus 21 ~L~e~g~~t~~eIA~~lgi~~S~~~Vs~rl~~L~~~GLve~~g~G~Y~iT~~G~~yL 77 (111) T 3b73_A 21 IIHEEGNGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQPLANGVYVITEEGEAYL 77 (111) T ss_dssp HHHHHSCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEECSTTCEEECHHHHHHH T ss_pred HHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEECCCCCEEECHHHHHHH T ss_conf 999849999999999868884799999999999878795666870079896689999 |
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli} | Back alignment and structure |
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>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D | Back alignment and structure |
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>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
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>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A | Back alignment and structure |
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>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A | Back alignment and structure |
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>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, activation, DNA-binding, ferrous iron, cytoplasm; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ... | Back alignment and structure |
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Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | Probability |
Target | 262 | prophage antirepressor [Candidatus Liberibacter asiatic | ||
d1mkma1 | 75 | Transcriptional regulator IclR, N-terminal domain {Ther | 93.41 |
>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Transcriptional regulator IclR, N-terminal domain domain: Transcriptional regulator IclR, N-terminal domain species: Thermotoga maritima [TaxId: 2336] Probab=93.41 E-value=0.12 Score=27.73 Aligned_cols=59 Identities=22% Similarity=0.192 Sum_probs=46.5 Q ss_pred HHHHCCCCCCCHHHHHHHHCCCC-CHHHHHHHHHHCCCEEECCCCCEEECHHHHHHHHHH Q ss_conf 65415587323999999738998-889999999978976853799443657897543553 Q gi|254780125|r 168 LPSSDNDEYLTITQIGERLNPPQ-RARFLNKLLLKRGLQVSKVSGGYRPTPKGEERGGKM 226 (262) Q Consensus 168 d~~~~~~~~l~~t~iak~l~~~~-sa~~~N~lL~~~g~q~Rk~~~~W~lt~kg~~~g~~~ 226 (262) +.+.++...+++++||+.+|++. +..++=.-|.+.|+..+...+.|.|..+...+|... T Consensus 12 ~~~a~~~~~~s~~eia~~~~~~~st~~rll~tL~~~g~l~~~~~g~y~lG~~l~~lg~~~ 71 (75) T d1mkma1 12 DFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRKKDKRYVPGYKLIEYGSFV 71 (75) T ss_dssp HHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECTTSCEEECTHHHHHHHHH T ss_pred HHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCEEECHHHHHHHHHH T ss_conf 999857999899999999791999999999999988998889999786329999999999 |
Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
No hit with e-value below 0.005
Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 262 | prophage antirepressor [Candidatus Liberibacter asiatic | ||
3hrs_A_1-138 | 138 | Metalloregulator SCAR; DTXR/MNTR family member, tr | 94.46 | |
2h09_A_ | 155 | Transcriptional regulator MNTR; transcription regu | 94.42 | |
2qq9_A_1-146 | 146 | Diphtheria toxin repressor; regulator, DTXR, helix | 94.29 | |
3b73_A_ | 111 | PHIH1 repressor-like protein; winged-helix-turn-he | 94.18 | |
1on2_A_ | 142 | Transcriptional regulator MNTR; helix-turn-helix, | 93.35 | |
1fx7_A_1-141 | 141 | Iron-dependent repressor IDER; DTXR, iron-dependen | 92.39 | |
2o0y_A_1-95 | 95 | Transcriptional regulator; ICLR-family, structural | 91.91 |
>3hrs_A (A:1-138) Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A | Back alignment and structure |
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Probab=94.46 E-value=0.13 Score=30.34 Aligned_cols=57 Identities=18% Similarity=0.176 Sum_probs=46.4 Q ss_pred HHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCCCEEECHHHHHHHHHH Q ss_conf 4155873239999997389988-89999999978976853799443657897543553 Q gi|254780125|r 170 SSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSGGYRPTPKGEERGGKM 226 (262) Q Consensus 170 ~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~~W~lt~kg~~~g~~~ 226 (262) ++...+.+++++||+.+|+..+ ...+-+.|.+.|+..+...+.+.+|++|....... T Consensus 14 ~~~~~~~~t~~~lA~~lgis~~tvt~~l~~Le~~GlV~~~r~~~v~lT~~G~~~~~~~ 71 (138) T 3hrs_A 14 LGTRHNKITNKEIAQLMQVSPPAVTEMMKKLLAEELLIKDKKAGYLLTDLGLKLVSDL 71 (138) T ss_dssp TTSSCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHHH T ss_pred HHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCEEECHHHHHHHHHH T ss_conf 9834998759999999789928999999999988997863895189878799999999 |
>2h09_A (A:) Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli} | Back alignment and structure |
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>2qq9_A (A:1-146) Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, activation, DNA-binding, ferrous iron, cytoplasm; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ... | Back alignment and structure |
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>3b73_A (A:) PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049} | Back alignment and structure |
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>1on2_A (A:) Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} | Back alignment and structure |
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>1fx7_A (A:1-141) Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
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>2o0y_A (A:1-95) Transcriptional regulator; ICLR-family, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP} | Back alignment and structure |
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