254780141
putative ABC transporter protein
| GeneID in NCBI database: | 8209116 | Locus tag: | CLIBASIA_00100 |
| Protein GI in NCBI database: | 254780141 | Protein Accession: | YP_003064554.1 |
| Gene range: | +(18754, 19380) | Protein Length: | 208aa |
| Gene description: | putative ABC transporter protein | ||
| COG prediction: | [R] ABC-type uncharacterized transport system, auxiliary component | ||
| KEGG prediction: | putative ABC transporter protein | ||
| SEED prediction: | hypothetical protein | ||
| Pathway involved in KEGG: | not defined | ||
| Subsystem involved in SEED: | - none - | ||
| sequence | sequence profile | ||
Prediction of Local Sequence Properties
| Source | Summary | Result |
|---|
|
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
| Identity | Alignment graph | Length | Definition | Round | E-value |
| Target | 208 | putative ABC transporter protein [Candidatus Liberibact | |||
| 315122743 | 202 | putative ABC transporter protein [Candidatus Liberibact | 1 | 3e-72 | |
| 302353422 | 112 | putative ABC transporter protein [Candidatus Liberibact | 1 | 5e-58 | |
| 190892032 | 203 | putative ABC transporter protein [Rhizobium etli CIAT 6 | 1 | 4e-36 | |
| 327190643 | 203 | putative ABC transporter protein [Rhizobium etli CNPAF5 | 1 | 5e-36 | |
| 86357961 | 203 | putative ABC transporter protein [Rhizobium etli CFN 42 | 1 | 1e-35 | |
| 241204912 | 203 | hypothetical protein Rleg_2192 [Rhizobium leguminosarum | 1 | 1e-35 | |
| 218461268 | 203 | putative ABC transporter protein [Rhizobium etli Kim 5] | 1 | 2e-35 | |
| 209549575 | 203 | ABC transporter [Rhizobium leguminosarum bv. trifolii W | 1 | 2e-35 | |
| 116252404 | 203 | hypothetical protein RL2658 [Rhizobium leguminosarum bv | 1 | 1e-34 | |
| 15888954 | 201 | hypothetical protein Atu1644 [Agrobacterium tumefaciens | 1 | 1e-34 |
| >gi|315122743|ref|YP_004063232.1| putative ABC transporter protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 202 | Back alignment and organism information |
|---|
Score = 275 bits (702), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 139/204 (68%), Positives = 169/204 (82%), Gaps = 2/204 (0%)
Query: 1 MDKKLNKIIKKKIISCSLAVLLCTSLSSCFFHNNPVNIYDLTESTKYDESVQRHIQLIIT 60
MDKKL KI K + C A+ LC LSSCF N P NI+DLTESTK+++S+Q +++L I
Sbjct: 1 MDKKLKKITKNMRL-CIPAISLCMFLSSCF-GNIPKNIFDLTESTKHNQSIQHNVRLTIN 58
Query: 61 EPITEKILNSEDIIVRSSPIEIQYLIGSQWSDKLPRMIQLKLIANFENNGKISTVVKPNQ 120
EP+T K L+S DIIVRSSP+EIQYLIGSQWSD+LPRM+QLKLIANFENNGKIST++KPNQ
Sbjct: 59 EPVTSKTLDSPDIIVRSSPVEIQYLIGSQWSDRLPRMVQLKLIANFENNGKISTIIKPNQ 118
Query: 121 GIYADYQIISAIRSFEINIDRHCAIITMSLKIINAHDNSLVGQKVFHVEEKLEKDNKLHF 180
GIY +YQI S IR+FEI+I H AII +SLKII+ + +++ QKVFHVEE E+DNKL F
Sbjct: 119 GIYPNYQISSIIRAFEIDIHHHYAIIEISLKIIDINTGNIIAQKVFHVEEAFEEDNKLCF 178
Query: 181 IQSLNRAFSRISSEIIDWTLSSLP 204
I+SLNRAFSRISSEII+WT+SSLP
Sbjct: 179 IESLNRAFSRISSEIINWTVSSLP 202
|
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|302353422|gb|ADL27917.1| putative ABC transporter protein [Candidatus Liberibacter asiaticus] Length = 112 | Back alignment and organism information |
|---|
| >gi|190892032|ref|YP_001978574.1| putative ABC transporter protein [Rhizobium etli CIAT 652] Length = 203 | Back alignment and organism information |
|---|
| >gi|327190643|gb|EGE57731.1| putative ABC transporter protein [Rhizobium etli CNPAF512] Length = 203 | Back alignment and organism information |
|---|
| >gi|86357961|ref|YP_469853.1| putative ABC transporter protein [Rhizobium etli CFN 42] Length = 203 | Back alignment and organism information |
|---|
| >gi|241204912|ref|YP_002976008.1| hypothetical protein Rleg_2192 [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 203 | Back alignment and organism information |
|---|
| >gi|218461268|ref|ZP_03501359.1| putative ABC transporter protein [Rhizobium etli Kim 5] Length = 203 | Back alignment and organism information |
|---|
| >gi|209549575|ref|YP_002281492.1| ABC transporter [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 203 | Back alignment and organism information |
|---|
| >gi|116252404|ref|YP_768242.1| hypothetical protein RL2658 [Rhizobium leguminosarum bv. viciae 3841] Length = 203 | Back alignment and organism information |
|---|
| >gi|15888954|ref|NP_354635.1| hypothetical protein Atu1644 [Agrobacterium tumefaciens str. C58] Length = 201 | Back alignment and organism information |
|---|
Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
| Identity | Alignment graph | Length | Definition | E-value |
| Target | 208 | putative ABC transporter protein [Candidatus Liberibact | ||
| pfam03886 | 160 | pfam03886, DUF330, Protein of unknown function (DUF330) | 1e-16 | |
| COG3218 | 205 | COG3218, COG3218, ABC-type uncharacterized transport sy | 2e-37 |
| >gnl|CDD|146492 pfam03886, DUF330, Protein of unknown function (DUF330) | Back alignment and domain information |
|---|
| >gnl|CDD|33031 COG3218, COG3218, ABC-type uncharacterized transport system, auxiliary component [General function prediction only] | Back alignment and domain information |
|---|
Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
| Identity | Alignment graph | Length | Definition | Probability |
| Target | 208 | putative ABC transporter protein [Candidatus Liberibact | ||
| COG3218 | 205 | ABC-type uncharacterized transport system, auxiliary co | 100.0 | |
| COG3009 | 190 | Uncharacterized protein conserved in bacteria [Function | 99.96 | |
| PRK11627 | 192 | hypothetical protein; Provisional | 98.74 | |
| COG3056 | 204 | Uncharacterized lipoprotein [Cell envelope biogenesis, | 97.65 | |
| pfam11769 | 202 | DUF3313 Protein of unknown function (DUF3313). This a b | 95.19 | |
| COG4380 | 216 | Uncharacterized protein conserved in bacteria [Function | 92.89 | |
| pfam03886 | 160 | DUF330 Protein of unknown function (DUF330). The protei | 99.97 | |
| pfam03923 | 159 | Lipoprotein_16 Uncharacterized lipoprotein. The functio | 96.27 | |
| pfam05643 | 215 | DUF799 Putative bacterial lipoprotein (DUF799). This fa | 96.87 | |
| pfam09927 | 120 | DUF2159 Predicted secreted (periplasmic) protein (DUF21 | 96.82 | |
| pfam03783 | 207 | CsgG Curli production assembly/transport component CsgG | 96.26 | |
| COG5468 | 172 | Predicted secreted (periplasmic) protein [Function unkn | 95.86 | |
| PRK02889 | 430 | tolB translocation protein TolB; Provisional | 93.31 | |
| COG1462 | 252 | CsgG Uncharacterized protein involved in formation of c | 94.29 | |
| PRK12700 | 230 | flgH flagellar basal body L-ring protein; Reviewed | 92.15 |
| >COG3218 ABC-type uncharacterized transport system, auxiliary component [General function prediction only] | Back alignment and domain information |
|---|
| >COG3009 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >PRK11627 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >COG3056 Uncharacterized lipoprotein [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >pfam11769 DUF3313 Protein of unknown function (DUF3313) | Back alignment and domain information |
|---|
| >COG4380 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >pfam03886 DUF330 Protein of unknown function (DUF330) | Back alignment and domain information |
|---|
| >pfam03923 Lipoprotein_16 Uncharacterized lipoprotein | Back alignment and domain information |
|---|
| >pfam05643 DUF799 Putative bacterial lipoprotein (DUF799) | Back alignment and domain information |
|---|
| >pfam09927 DUF2159 Predicted secreted (periplasmic) protein (DUF2159) | Back alignment and domain information |
|---|
| >pfam03783 CsgG Curli production assembly/transport component CsgG | Back alignment and domain information |
|---|
| >COG5468 Predicted secreted (periplasmic) protein [Function unknown] | Back alignment and domain information |
|---|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
| >COG1462 CsgG Uncharacterized protein involved in formation of curli polymers [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
| >PRK12700 flgH flagellar basal body L-ring protein; Reviewed | Back alignment and domain information |
|---|
Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
| Identity | Alignment graph | Length | Definition | E-value |
| Target | 208 | putative ABC transporter protein [Candidatus Liberibact | ||
| 2iqi_A | 192 | Crystal Structure Of Protein Xcc0632 From Xanthomon | 6e-20 |
| >gi|119390266|pdb|2IQI|A Chain A, Crystal Structure Of Protein Xcc0632 From Xanthomonas Campestris, Pfam Duf330 Length = 192 | Back alignment and structure |
Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats.
Identities = 45/174 (25%), Positives = 86/174 (49%), Gaps = 4/174 (2%)
Query: 31 FHNNPVNIYDLTE-STKYDESVQRHIQLIITEPITEKILNSEDIIVRSSPIEIQYLIGSQ 89
P IY T T Q QL++ +P +I++S I VR +P E+Q G+
Sbjct: 5 GDQKPATIYAPTVRVTPNPAWPQVSWQLLVAKPSAARIIDSPRINVRPTPGELQVYHGAG 64
Query: 90 WSDKLPRMIQLKLIANFENNGKISTVVKPNQGIYADYQIISAIRSFEINI---DRHCAII 146
W+ M++ ++ FE++GKI+ V + GI +DY++ +R FE + A I
Sbjct: 65 WAQPATDMLEDSVVRAFEDSGKIAAVARIGAGIRSDYKLAIDVRRFESDYAGQSLPAATI 124
Query: 147 TMSLKIINAHDNSLVGQKVFHVEEKLEKDNKLHFIQSLNRAFSRISSEIIDWTL 200
++ K++++ D +V + F V + + +A +++++E++ WTL
Sbjct: 125 ELNAKLLHSSDQRVVASRTFTVARPSSSTDTAAVAAAFEQALTQVTTELVGWTL 178
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Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| Identity | Alignment graph | Length | Definition | E-value |
| Target | 208 | putative ABC transporter protein [Candidatus Liberibact | ||
| 2iqi_A | 192 | Hypothetical protein XCC0632; structural genomics, PSI- | 3e-34 |
| >2iqi_A Hypothetical protein XCC0632; structural genomics, PSI-2, protein structure initiative; 2.70A {Xanthomonas campestris PV} SCOP: c.51.6.2 Length = 192 | Back alignment and structure |
|---|
Score = 139 bits (352), Expect = 3e-34
Identities = 43/172 (25%), Positives = 88/172 (51%), Gaps = 4/172 (2%)
Query: 35 PVNIYDLTESTKYDESVQR-HIQLIITEPITEKILNSEDIIVRSSPIEIQYLIGSQWSDK 93
P IY T + + + QL++ +P +I++S I VR +P E+Q G+ W+
Sbjct: 9 PATIYAPTVRVTPNPAWPQVSWQLLVAKPSAARIIDSPRINVRPTPGELQVYHGAGWAQP 68
Query: 94 LPRMIQLKLIANFENNGKISTVVKPNQGIYADYQIISAIRSFEINIDRH---CAIITMSL 150
M++ ++ FE++GKI+ V + GI +DY++ +R FE + A I ++
Sbjct: 69 ATDMLEDSVVRAFEDSGKIAAVARIGAGIRSDYKLAIDVRRFESDYAGQSLPAATIELNA 128
Query: 151 KIINAHDNSLVGQKVFHVEEKLEKDNKLHFIQSLNRAFSRISSEIIDWTLSS 202
K++++ D +V + F V + + +A +++++E++ WTL +
Sbjct: 129 KLLHSSDQRVVASRTFTVARPSSSTDTAAVAAAFEQALTQVTTELVGWTLIT 180
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Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
| Identity | Alignment graph | Length | Definition | Probability |
| Target | 208 | putative ABC transporter protein [Candidatus Liberibact | ||
| 2iqi_A | 192 | Hypothetical protein XCC0632; structural genomics, PSI- | 100.0 |
| >2iqi_A Hypothetical protein XCC0632; structural genomics, PSI-2, protein structure initiative; 2.70A {Xanthomonas campestris PV} SCOP: c.51.6.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-36 Score=222.12 Aligned_cols=171 Identities=26% Similarity=0.512 Sum_probs=157.3
Q ss_pred CCCCCEEEECCCCCCCCCC-CCCCCCEEEECCCCCCCCCCCEEEEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 9998607970788876666-666620898153012000686378994697699814660125689999999999997316
Q gi|254780141|r 32 HNNPVNIYDLTESTKYDES-VQRHIQLIITEPITEKILNSEDIIVRSSPIEIQYLIGSQWSDKLPRMIQLKLIANFENNG 110 (208)
Q Consensus 32 ~~~p~~~Y~L~~~~~~~~~-~~~~~~i~v~~~~~~~~l~~~~Iv~~~~~~~~~~~~~~rW~~~p~~~l~~~L~~~L~~~~ 110 (208)
..+|.++|.|+++....++ .+...+|.|.+|.++++||+++|+|+.++++++++.+|||+++|++||++.|.++|++.+
T Consensus 6 ~~~P~~~y~l~~~~~~~~~~p~~~~~l~V~~p~~p~~ld~~~Iv~~~~~~~l~~~~~~rWa~~~~~~l~~~L~~~L~~~~ 85 (192)
T 2iqi_A 6 DQKPATIYAPTVRVTPNPAWPQVSWQLLVAKPSAARIIDSPRINVRPTPGELQVYHGAGWAQPATDMLEDSVVRAFEDSG 85 (192)
T ss_dssp ----CEEECCCCCCCCCTTSCCCCSEEEECCCBCCTTTSSSSCEEESSTTCCEECTTEEESSCHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCEECCCCCCCCCCCCCCCCEEEEECCCCCHHHHCCCCEEEEECCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 99996524369877899988987436998773411232677779993898787735782103778999999999999609
Q ss_pred CCEEEECCCCCCCCCEEEEEEEEEEEEECCC---CEEEEEEEEEEEECCCCCEEEEEEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 9406503767778835999999999963587---4799999999994578827789999999952779988999999999
Q gi|254780141|r 111 KISTVVKPNQGIYADYQIISAIRSFEINIDR---HCAIITMSLKIINAHDNSLVGQKVFHVEEKLEKDNKLHFIQSLNRA 187 (208)
Q Consensus 111 ~~~~v~~~~~~~~~~~~L~~~I~~f~~~~~~---~~a~i~~~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~~v~Al~~A 187 (208)
.+..|.+++++.++||+|+++|++|++++++ ..+++.++|.+++.++++++++++|+.++|+.++++.++|+||++|
T Consensus 86 ~~~~v~~~~~~~~~d~~L~~~I~~F~~~~~~~~~~~a~~~~~~~l~~~~~~~v~~~~~f~~~~p~~~~~~~~lV~A~~~A 165 (192)
T 2iqi_A 86 KIAAVARIGAGIRSDYKLAIDVRRFESDYAGQSLPAATIELNAKLLHSSDQRVVASRTFTVARPSSSTDTAAVAAAFEQA 165 (192)
T ss_dssp SCSEEECC-----CCEEEEEEEEEEEEECTTSSSCEEEEEEEEEEEETTTTEEEEEEEEEEEEECSSSSHHHHHHHHHHH
T ss_pred CCCEEECCCCCCCCCEEEEEEEEEEEEEECCCCCEEEEEEEEEEEECCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 97357568888887769999999988760688752799999888512789817899999999767889989999999999
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999999973
Q gi|254780141|r 188 FSRISSEIIDWTLSS 202 (208)
Q Consensus 188 l~~l~~~ia~w~~~~ 202 (208)
+++++++|++|+++.
T Consensus 166 l~~l~~~ia~w~~~~ 180 (192)
T 2iqi_A 166 LTQVTTELVGWTLIT 180 (192)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999999987
|
Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| Identity | Alignment graph | Length | Definition | E-value |
| 208 | putative ABC transporter protein [Candidatus Liberibact | |||
| d2iqia1 | 178 | c.51.6.2 (A:32-209) Hypothetical protein XCC0632 {Xanth | 4e-32 |
| >d2iqia1 c.51.6.2 (A:32-209) Hypothetical protein XCC0632 {Xanthomonas campestris pv. campestris [TaxId: 340]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Anticodon-binding domain-like superfamily: XCC0632-like family: XCC0632-like domain: Hypothetical protein XCC0632 species: Xanthomonas campestris pv. campestris [TaxId: 340]
Score = 131 bits (331), Expect = 4e-32
Identities = 42/169 (24%), Positives = 87/169 (51%), Gaps = 4/169 (2%)
Query: 38 IYDLTESTKYDESVQR-HIQLIITEPITEKILNSEDIIVRSSPIEIQYLIGSQWSDKLPR 96
IY T + + + QL++ +P +I++S I VR +P E+Q G+ W+
Sbjct: 3 IYAPTVRVTPNPAWPQVSWQLLVAKPSAARIIDSPRINVRPTPGELQVYHGAGWAQPATD 62
Query: 97 MIQLKLIANFENNGKISTVVKPNQGIYADYQIISAIRSFEINIDRH---CAIITMSLKII 153
M++ ++ FE++GKI+ V + GI +DY++ +R FE + A I ++ K++
Sbjct: 63 MLEDSVVRAFEDSGKIAAVARIGAGIRSDYKLAIDVRRFESDYAGQSLPAATIELNAKLL 122
Query: 154 NAHDNSLVGQKVFHVEEKLEKDNKLHFIQSLNRAFSRISSEIIDWTLSS 202
++ D +V + F V + + +A +++++E++ WTL +
Sbjct: 123 HSSDQRVVASRTFTVARPSSSTDTAAVAAAFEQALTQVTTELVGWTLIT 171
|
Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| Identity | Alignment graph | Length | Definition | Probability |
| Target | 208 | putative ABC transporter protein [Candidatus Liberibact | ||
| d2iqia1 | 178 | Hypothetical protein XCC0632 {Xanthomonas campestris pv | 100.0 |
| >d2iqia1 c.51.6.2 (A:32-209) Hypothetical protein XCC0632 {Xanthomonas campestris pv. campestris [TaxId: 340]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Anticodon-binding domain-like superfamily: XCC0632-like family: XCC0632-like domain: Hypothetical protein XCC0632 species: Xanthomonas campestris pv. campestris [TaxId: 340]
Probab=100.00 E-value=2.1e-34 Score=210.70 Aligned_cols=167 Identities=26% Similarity=0.500 Sum_probs=154.2
Q ss_pred EEEECCCCCCCCCCC-CCCCCEEEECCCCCCCCCCCEEEEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 079707888766666-6662089815301200068637899469769981466012568999999999999731694065
Q gi|254780141|r 37 NIYDLTESTKYDESV-QRHIQLIITEPITEKILNSEDIIVRSSPIEIQYLIGSQWSDKLPRMIQLKLIANFENNGKISTV 115 (208)
Q Consensus 37 ~~Y~L~~~~~~~~~~-~~~~~i~v~~~~~~~~l~~~~Iv~~~~~~~~~~~~~~rW~~~p~~~l~~~L~~~L~~~~~~~~v 115 (208)
++|.+.+.....+.. +...+|.|.+|.++++||+++|+|+.+++++.+|.++||+++|++||++.|.++|++++.+..|
T Consensus 2 ~~~~p~~~~~~~p~~p~~~~~l~V~~~~~~~~ld~~~Iv~~~~~~~l~~~~~~rWa~~~~~~l~~~L~~~L~~~~~~~~V 81 (178)
T d2iqia1 2 TIYAPTVRVTPNPAWPQVSWQLLVAKPSAARIIDSPRINVRPTPGELQVYHGAGWAQPATDMLEDSVVRAFEDSGKIAAV 81 (178)
T ss_dssp EEECCCCCCCCCTTSCCCCSEEEECCCBCCTTTSSSSCEEESSTTCCEECTTEEESSCHHHHHHHHHHHHHHTTSSCSEE
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHCCCCEEEEECCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 63357988888998997616999877346111077756999589778451378222687899999999999960997458
Q ss_pred ECCCCCCCCCEEEEEEEEEEEEECCCC---EEEEEEEEEEEECCCCCEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf 037677788359999999999635874---79999999999457882778999999995277998899999999999999
Q gi|254780141|r 116 VKPNQGIYADYQIISAIRSFEINIDRH---CAIITMSLKIINAHDNSLVGQKVFHVEEKLEKDNKLHFIQSLNRAFSRIS 192 (208)
Q Consensus 116 ~~~~~~~~~~~~L~~~I~~f~~~~~~~---~a~i~~~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~~v~Al~~Al~~l~ 192 (208)
.+++++..+||+|+++|++|+++++++ .+++.++|.+++.++++++++++|..++|+.+++++++|+||++|+++++
T Consensus 82 ~~~~~~~~~d~~L~~~i~~F~~~~~~~~~~~a~~~~~~~l~~~~~~~v~~~~~f~~~~p~~~~~~~~lV~A~~~Al~~l~ 161 (178)
T d2iqia1 82 ARIGAGIRSDYKLAIDVRRFESDYAGQSLPAATIELNAKLLHSSDQRVVASRTFTVARPSSSTDTAAVAAAFEQALTQVT 161 (178)
T ss_dssp ECC-----CCEEEEEEEEEEEEECTTSSSCEEEEEEEEEEEETTTTEEEEEEEEEEEEECSSSSHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCCCCEEEEEEEEEEEEEECCCCCEEEEEEEEEEEECCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHH
T ss_conf 66888888776999999998888458886289999999982178981788999999974788998999999999999999
Q ss_pred HHHHHHHHHHC
Q ss_conf 99999999739
Q gi|254780141|r 193 SEIIDWTLSSL 203 (208)
Q Consensus 193 ~~ia~w~~~~~ 203 (208)
++|++|+++..
T Consensus 162 ~~ia~W~~~~~ 172 (178)
T d2iqia1 162 TELVGWTLITG 172 (178)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999975
|
Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
| Identity | Alignment graph | Length | Definition | E-value |
| Target | 208 | putative ABC transporter protein [Candidatus Liber | ||
| 2iqi_A_ | 192 | (A:) Hypothetical protein XCC0632; structural geno | 6e-33 |
| >2iqi_A (A:) Hypothetical protein XCC0632; structural genomics, PSI-2, protein structure initiative; 2.70A {Xanthomonas campestris PV}Length = 192 | Back alignment and structure |
|---|
Score = 135 bits (340), Expect = 6e-33
Identities = 48/184 (26%), Positives = 90/184 (48%), Gaps = 6/184 (3%)
Query: 25 SLSSCFFHNNPVNIYDLT-ESTKYDESVQRHIQLIITEPITEKILNSEDIIVRSSPIEIQ 83
SLS P IY T T Q QL++ +P +I++S I VR +P E+Q
Sbjct: 1 SLSLG--DQKPATIYAPTVRVTPNPAWPQVSWQLLVAKPSAARIIDSPRINVRPTPGELQ 58
Query: 84 YLIGSQWSDKLPRMIQLKLIANFENNGKISTVVKPNQGIYADYQIISAIRSFEINIDRH- 142
G+ W+ M++ ++ FE++GKI+ V + GI +DY++ +R FE +
Sbjct: 59 VYHGAGWAQPATDMLEDSVVRAFEDSGKIAAVARIGAGIRSDYKLAIDVRRFESDYAGQS 118
Query: 143 --CAIITMSLKIINAHDNSLVGQKVFHVEEKLEKDNKLHFIQSLNRAFSRISSEIIDWTL 200
A I ++ K++++ D +V + F V + + +A +++++E++ WTL
Sbjct: 119 LPAATIELNAKLLHSSDQRVVASRTFTVARPSSSTDTAAVAAAFEQALTQVTTELVGWTL 178
Query: 201 SSLP 204
+
Sbjct: 179 ITGQ 182
|
Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
| Identity | Alignment graph | Length | Definition | Probability |
| Target | 208 | putative ABC transporter protein [Candidatus Liberibact | ||
| 2iqi_A_ | 192 | Hypothetical protein XCC0632; structural genomics, | 100.0 | |
| 2jxp_A_ | 155 | Putative lipoprotein B; uncharacterized lipoprotei | 95.06 |
| >2iqi_A (A:) Hypothetical protein XCC0632; structural genomics, PSI-2, protein structure initiative; 2.70A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=236.50 Aligned_cols=178 Identities=26% Similarity=0.455 Sum_probs=165.6
Q ss_pred HHHCCCCCCCCCEEEECCCCCC-CCCCCCCCCCEEEECCCCCCCCCCCEEEEEECCCEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 8630488999860797078887-666666662089815301200068637899469769981466012568999999999
Q gi|254780141|r 25 SLSSCFFHNNPVNIYDLTESTK-YDESVQRHIQLIITEPITEKILNSEDIIVRSSPIEIQYLIGSQWSDKLPRMIQLKLI 103 (208)
Q Consensus 25 ~l~~c~~~~~p~~~Y~L~~~~~-~~~~~~~~~~i~v~~~~~~~~l~~~~Iv~~~~~~~~~~~~~~rW~~~p~~~l~~~L~ 103 (208)
.|+||++++ ++||.|+++.. .......++.|.|.+|.++++|++++|+|+.++++++++.+|||+++|++||++.|.
T Consensus 1 ~LsGCss~p--~~~Y~L~~~~~~~~~~~~~~~~i~v~~v~~~~~l~~~~iv~~~~~~~~~~~~~~rWa~~~~~~l~~~L~ 78 (192)
T 2iqi_A 1 SLSLGDQKP--ATIYAPTVRVTPNPAWPQVSWQLLVAKPSAARIIDSPRINVRPTPGELQVYHGAGWAQPATDMLEDSVV 78 (192)
T ss_dssp -----------CEEECCCCCCCCCTTSCCCCSEEEECCCBCCTTTSSSSCEEESSTTCCEECTTEEESSCHHHHHHHHHH
T ss_pred CCCCCCCCC--CCEEECCCCCCCCCCCCCCCEEEEECCCCCCHHHCCCCEEEEECCCEEEECCCCCHHCCHHHHHHHHHH
T ss_conf 967889999--557864788888988898753699876334001067877998389889773678110387899999999
Q ss_pred HHHHHHCCCEEEECCCCCCCCCEEEEEEEEEEEEECCCC---EEEEEEEEEEEECCCCCEEEEEEEEEEEECCCCCHHHH
Q ss_conf 999731694065037677788359999999999635874---79999999999457882778999999995277998899
Q gi|254780141|r 104 ANFENNGKISTVVKPNQGIYADYQIISAIRSFEINIDRH---CAIITMSLKIINAHDNSLVGQKVFHVEEKLEKDNKLHF 180 (208)
Q Consensus 104 ~~L~~~~~~~~v~~~~~~~~~~~~L~~~I~~f~~~~~~~---~a~i~~~~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 180 (208)
++|++.+.+..|++++++..+||+|+++|++|+++++++ ++++.++|.+++.+++++++++.|+.++|+.++++.++
T Consensus 79 ~~L~~~~~~~~v~~~~~~~~~d~~L~~~i~~f~~~~~~~~~~~~~l~~~~~l~~~~~~~~i~~~~f~~~~~~~~~~~~~~ 158 (192)
T 2iqi_A 79 RAFEDSGKIAAVARIGAGIRSDYKLAIDVRRFESDYAGQSLPAATIELNAKLLHSSDQRVVASRTFTVARPSSSTDTAAV 158 (192)
T ss_dssp HHHHTTSSCSEEECC-----CCEEEEEEEEEEEEECTTSSSCEEEEEEEEEEEETTTTEEEEEEEEEEEEECSSSSHHHH
T ss_pred HHHHHHCCCCEEECCCCCCCCCEEEEEEEEEEEEEECCCCCEEEEEEEEEEEEECCCCCEEEEEEEEEEEECCCCCHHHH
T ss_conf 99996099736756888888887999999997877168885379999999997579983789988999977788998999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999999999999999997397
Q gi|254780141|r 181 IQSLNRAFSRISSEIIDWTLSSLP 204 (208)
Q Consensus 181 v~Al~~Al~~l~~~ia~w~~~~~p 204 (208)
|+||++|+++++++|++|+.+.+|
T Consensus 159 v~A~~~al~~l~~~ia~~i~~~~~ 182 (192)
T 2iqi_A 159 AAAFEQALTQVTTELVGWTLITGQ 182 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999998655
|
| >2jxp_A (A:) Putative lipoprotein B; uncharacterized lipoprotein B, structure, northeast structural genomics consortium, NESG, PSI-2; NMR {Nitrosomonas europaea atcc 19718} | Back alignment and structure |
|---|