254780161
phytoene synthase protein
GeneID in NCBI database: | 8209138 | Locus tag: | CLIBASIA_00220 |
Protein GI in NCBI database: | 254780161 | Protein Accession: | YP_003064574.1 |
Gene range: | -(44016, 44915) | Protein Length: | 299aa |
Gene description: | phytoene synthase protein | ||
COG prediction: | [I] Phytoene/squalene synthetase | ||
KEGG prediction: | phytoene synthase protein; K02291 phytoene synthase [EC:2.5.1.32] | ||
SEED prediction: | Phytoene synthase (EC 2.5.1.32) | ||
Pathway involved in KEGG: | Carotenoid biosynthesis | ||
Subsystem involved in SEED: | - none - | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 299 | phytoene synthase protein [Candidatus Liberibacter asia | |||
315122666 | 254 | phytoene synthase protein [Candidatus Liberibacter sola | 1 | 1e-91 | |
222085796 | 286 | phytoene synthase protein [Agrobacterium radiobacter K8 | 1 | 2e-59 | |
190891523 | 285 | phytoene synthase protein [Rhizobium etli CIAT 652] Len | 1 | 5e-57 | |
15965294 | 280 | putative phytoene synthase protein [Sinorhizobium melil | 1 | 9e-56 | |
241204426 | 285 | Squalene/phytoene synthase [Rhizobium leguminosarum bv. | 1 | 4e-55 | |
218510623 | 383 | phytoene synthase protein [Rhizobium etli Brasil 5] Len | 1 | 1e-54 | |
227821946 | 279 | hypothetical protein NGR_c13830 [Sinorhizobium fredii N | 1 | 2e-54 | |
116251817 | 280 | phytoene synthase [Rhizobium leguminosarum bv. viciae 3 | 1 | 2e-54 | |
209549099 | 285 | phytoene synthase protein [Rhizobium leguminosarum bv. | 1 | 7e-54 | |
325292956 | 281 | phytoene synthase [Agrobacterium sp. H13-3] Length = 28 | 1 | 9e-54 |
>gi|315122666|ref|YP_004063155.1| phytoene synthase protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 254 | Back alignment and organism information |
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Score = 340 bits (873), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 166/248 (66%), Positives = 200/248 (80%) Query: 18 SRDSLFVLRNLRDIDYDRYLACLLSPPLYRISLSFLYYFHTELMRVRDTARNPITRDMRL 77 ++D LF L NLRD+D DRYLACLLSP RI L+ LY F+ EL RVRD A NP+ ++RL Sbjct: 3 AQDHLFSLHNLRDMDRDRYLACLLSPSHLRIPLAILYSFNAELARVRDLASNPLAGEIRL 62 Query: 78 QWWKDIFESSTKGLIAESISPFSVELLSIVRQYDLPNQYFLDMIEAHFFDSYNDSIFDCK 137 QWWKDIFESS +++ES SP S++L+SI+ QY LP Q+F DMIEA FFD YNDSIFDCK Sbjct: 63 QWWKDIFESSRDNILSESKSPLSIKLVSIINQYALPYQFFFDMIEARFFDPYNDSIFDCK 122 Query: 138 QFEHYAFRISSRLIHLATMILDSERYSASLRVIKYAGIAQFIGQLICQLPIHYHRGQLYF 197 Q E YAF+I+S LIHLATMIL ++ + VIK+AGIAQFIG+LI L H +RGQLY Sbjct: 123 QLEIYAFKIASSLIHLATMILSDKKNFDIIDVIKHAGIAQFIGELILLLSKHCNRGQLYL 182 Query: 198 PLDILGAVGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKAREEMRYILPDVFPAFIPV 257 PLDILGAVGLDRESF SG+N++RISL IKIFAELGL++L KAR+EM +I PD+FPAFIPV Sbjct: 183 PLDILGAVGLDRESFFSGENNERISLVIKIFAELGLEHLVKARKEMNHISPDIFPAFIPV 242 Query: 258 SITESVLK 265 SITE++LK Sbjct: 243 SITENILK 250 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|222085796|ref|YP_002544326.1| phytoene synthase protein [Agrobacterium radiobacter K84] Length = 286 | Back alignment and organism information |
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>gi|190891523|ref|YP_001978065.1| phytoene synthase protein [Rhizobium etli CIAT 652] Length = 285 | Back alignment and organism information |
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>gi|15965294|ref|NP_385647.1| putative phytoene synthase protein [Sinorhizobium meliloti 1021] Length = 280 | Back alignment and organism information |
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>gi|241204426|ref|YP_002975522.1| Squalene/phytoene synthase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 285 | Back alignment and organism information |
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>gi|218510623|ref|ZP_03508501.1| phytoene synthase protein [Rhizobium etli Brasil 5] Length = 383 | Back alignment and organism information |
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>gi|227821946|ref|YP_002825916.1| hypothetical protein NGR_c13830 [Sinorhizobium fredii NGR234] Length = 279 | Back alignment and organism information |
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>gi|116251817|ref|YP_767655.1| phytoene synthase [Rhizobium leguminosarum bv. viciae 3841] Length = 280 | Back alignment and organism information |
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>gi|209549099|ref|YP_002281016.1| phytoene synthase protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 285 | Back alignment and organism information |
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>gi|325292956|ref|YP_004278820.1| phytoene synthase [Agrobacterium sp. H13-3] Length = 281 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 299 | phytoene synthase protein [Candidatus Liberibacter asia | ||
COG1562 | 288 | COG1562, ERG9, Phytoene/squalene synthetase [Lipid meta | 9e-25 | |
cd00683 | 265 | cd00683, Trans_IPPS_HH, Trans-Isoprenyl Diphosphate Syn | 1e-04 | |
pfam00494 | 262 | pfam00494, SQS_PSY, Squalene/phytoene synthase | 5e-30 | |
KOG4411 | 292 | KOG4411, KOG4411, KOG4411, Phytoene/squalene synthetase | 1e-16 |
>gnl|CDD|31750 COG1562, ERG9, Phytoene/squalene synthetase [Lipid metabolism] | Back alignment and domain information |
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>gnl|CDD|173831 cd00683, Trans_IPPS_HH, Trans-Isoprenyl Diphosphate Synthases, head-to-head | Back alignment and domain information |
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>gnl|CDD|144184 pfam00494, SQS_PSY, Squalene/phytoene synthase | Back alignment and domain information |
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>gnl|CDD|39612 KOG4411, KOG4411, KOG4411, Phytoene/squalene synthetase [Lipid transport and metabolism] | Back alignment and domain information |
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Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 299 | phytoene synthase protein [Candidatus Liberibacter asia | ||
TIGR03465 | 266 | HpnD squalene synthase HpnD. The genes of this family a | 100.0 | |
TIGR03464 | 266 | HpnC squalene synthase HpnC. This family of genes are m | 100.0 | |
cd00683 | 265 | Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases (Tr | 100.0 | |
pfam00494 | 262 | SQS_PSY Squalene/phytoene synthase. | 100.0 | |
COG1562 | 288 | ERG9 Phytoene/squalene synthetase [Lipid metabolism] | 100.0 | |
KOG4411 | 292 | consensus | 100.0 | |
TIGR01559 | 350 | squal_synth farnesyl-diphosphate farnesyltransferase; I | 99.87 | |
KOG1459 | 413 | consensus | 99.61 | |
KOG1459 | 413 | consensus | 99.58 | |
cd00867 | 236 | Trans_IPPS Trans-Isoprenyl Diphosphate Synthases (Trans | 99.72 | |
cd00385 | 243 | Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, C | 99.63 | |
cd00685 | 298 | Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases (Tr | 95.53 | |
PRK10581 | 299 | geranyltranstransferase; Provisional | 95.35 | |
PRK10888 | 323 | octaprenyl diphosphate synthase; Provisional | 92.41 | |
KOG0776 | 384 | consensus | 91.93 |
>TIGR03465 HpnD squalene synthase HpnD | Back alignment and domain information |
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>TIGR03464 HpnC squalene synthase HpnC | Back alignment and domain information |
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>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS), head-to-head (HH) (1'-1) condensation reaction | Back alignment and domain information |
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>pfam00494 SQS_PSY Squalene/phytoene synthase | Back alignment and domain information |
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>COG1562 ERG9 Phytoene/squalene synthetase [Lipid metabolism] | Back alignment and domain information |
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>KOG4411 consensus | Back alignment and domain information |
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>TIGR01559 squal_synth farnesyl-diphosphate farnesyltransferase; InterPro: IPR006449 This family of sequences describe farnesyl-diphosphate farnesyltransferase, also known as squalene synthase, as found in eukaryotes | Back alignment and domain information |
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>KOG1459 consensus | Back alignment and domain information |
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>KOG1459 consensus | Back alignment and domain information |
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>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate | Back alignment and domain information |
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>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1; Superfamily of trans-isoprenyl diphosphate synthases (IPPS) and class I terpene cyclases which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate | Back alignment and domain information |
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>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS), head-to-tail (HT) (1'-4) condensation reactions | Back alignment and domain information |
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>PRK10581 geranyltranstransferase; Provisional | Back alignment and domain information |
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>PRK10888 octaprenyl diphosphate synthase; Provisional | Back alignment and domain information |
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>KOG0776 consensus | Back alignment and domain information |
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Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
Identity | Alignment graph | Length | Definition | E-value |
Target | 299 | phytoene synthase protein [Candidatus Liberibacter asia | ||
2zco_A | 293 | Crystal Structure Of The C(30) Carotenoid Dehydrosq | 2e-39 | |
3adz_A | 293 | Crystal Structure Of The C(30) Carotenoid Dehydrosq | 4e-39 | |
3ae0_A | 293 | Crystal Structure Of The C(30) Carotenoid Dehydrosq | 5e-39 | |
3lee_A | 340 | Crystal Structure Of The Human Squalene Synthase Co | 1e-13 | |
1ezf_A | 340 | Crystal Structure Of Human Squalene Synthase Length | 1e-13 |
>gi|169791834|pdb|2ZCO|A Chain A, Crystal Structure Of The C(30) Carotenoid Dehydrosqualene Synthase From Staphylococcus Aureus Length = 293 | Back alignment and structure |
Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 28/278 (10%), Positives = 90/278 (32%), Gaps = 2/278 (0%) Query: 14 EKIFSRDSLFVLRNLRDIDYDRYLACLLSPPLYRISLSFLYYFHTELMRVRDTARNPITR 73 + + + + ++ A L P R ++ +Y ++ D + Sbjct: 7 MTMMDMNFKYCHKIMKKHSKSFSYAFDLLPEDQRKAVWAIYAVCRKIDDSIDVYGDIQFL 66 Query: 74 DMRLQWWKDIFESSTKGLIAESISPFSVELLSIVRQYDLPNQYFLDMIEAHFFDSYNDSI 133 + + + I + + +S + L + + ++ Q F ++I+ + D + Sbjct: 67 NQIKEDIQSIEKYPYEYHHFQSDRRIMMALQHVAQHKNIAFQSFYNLIDTVYKDQHFTMF 126 Query: 134 FDCKQFEHYAFRISSRLIHLATMILDSERYSASLRVIKYAGIAQFIGQLICQLPIHYHRG 193 + Y + ++ + + T IL + V + G + + ++ + + Sbjct: 127 ETDAELFGYCYGVAGTVGEVLTPILSDHETHQTYDVARRLGESLQLINILRDVGEDFENE 186 Query: 194 QLYFPLDILGAVGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKAREEMRYILPDVFPA 253 ++YF L +D ++ + +A + K ++++ + P Sbjct: 187 RIYFSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFRDVMDQIKVFSIEAQPI 246 Query: 254 F-IPVSITESVLKHAQNHGFKIVSHSHTPNQLVRPWYM 290 + I +L + + + + + Sbjct: 247 IELAARIYIEILDEVRQANY-TLHERVFVEKRKKAKLF 283 |
>gi|312597217|pdb|3ADZ|A Chain A, Crystal Structure Of The C(30) Carotenoid Dehydrosqualene Synthase From Staphylococcus Aureus Complexed With Intermediate Pspp Length = 293 | Back alignment and structure |
>gi|312597218|pdb|3AE0|A Chain A, Crystal Structure Of The C(30) Carotenoid Dehydrosqualene Synthase From Staphylococcus Aureus Complexed With Geranylgeranyl Thiopyrophosphate Length = 293 | Back alignment and structure |
>gi|313754278|pdb|3LEE|A Chain A, Crystal Structure Of The Human Squalene Synthase Complexed With Bph- 652 Length = 340 | Back alignment and structure |
>gi|11514495|pdb|1EZF|A Chain A, Crystal Structure Of Human Squalene Synthase Length = 340 | Back alignment and structure |
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 299 | phytoene synthase protein [Candidatus Liberibacter asia | ||
1ezf_A | 340 | Farnesyl-diphosphate farnesyltransferase; isoprenoid sy | 3e-18 | |
2zco_A | 293 | Dehydrosqualene synthase; CRTM, carotenoid biosynthesis | 1e-10 |
>1ezf_A Farnesyl-diphosphate farnesyltransferase; isoprenoid synthase fold, all alpha-helix; HET: IN0; 2.15A {Homo sapiens} SCOP: a.128.1.2 Length = 340 | Back alignment and structure |
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Score = 87.7 bits (217), Expect = 3e-18 Identities = 20/238 (8%), Positives = 58/238 (24%), Gaps = 23/238 (9%) Query: 36 YLACLLSPPLYRISLSFLYYFHTELMRVRDT-----ARNPITRDMRLQWWKDIFESSTKG 90 R ++ Y +R DT + + L + Sbjct: 25 AAVIQALDGEMRNAVCIFYLV----LRALDTLEDDMTISVEKKVPLLHNFHSFLYQPDWR 80 Query: 91 LIA---------ESISPFSVELLSIVRQYDLPNQYFLDMIEAHFFDSYNDSIFDCKQFEH 141 + E S+E ++ +Y + + + + ++++ Sbjct: 81 FMESKEKDRQVLEDFPTISLEFRNLAEKYQTVIADICRRMGIGMAEFLDKHVTSEQEWDK 140 Query: 142 YAFRISSRLIHLATMIL-----DSERYSASLRVIKYAGIAQFIGQLICQLPIHYHRGQLY 196 Y ++ + + + + G+ +I G+ + Sbjct: 141 YCHYVAGLVGIGLSRLFSASEFEDPLVGEDTERANSMGLFLQKTNIIRDYLEDQQGGREF 200 Query: 197 FPLDILGAVGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKAREEMRYILPDVFPAF 254 +P ++ F +N D + L ++ + + F Sbjct: 201 WPQEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSRLRNQSVFNF 258 |
>2zco_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation; 1.58A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* Length = 293 | Back alignment and structure |
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Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 299 | phytoene synthase protein [Candidatus Liberibacter asia | ||
2zco_A | 293 | Dehydrosqualene synthase; CRTM, carotenoid biosynthesis | 100.0 | |
1ezf_A | 340 | Farnesyl-diphosphate farnesyltransferase; isoprenoid sy | 100.0 | |
3n3d_A | 335 | Geranylgeranyl pyrophosphate synthase; isoprenyl diphos | 96.38 | |
3lmd_A | 360 | Geranylgeranyl pyrophosphate synthase; isoprenyl diphos | 96.21 | |
3ipi_A | 295 | Geranyltranstransferase; isoprene biosynthesis, helical | 96.19 | |
2q80_A | 301 | Geranylgeranyl pyrophosphate synthetase; isoprenoid pat | 95.19 | |
1wy0_A | 342 | Geranylgeranyl pyrophosphate synthetase; structural gen | 93.53 | |
3mzv_A | 341 | Decaprenyl diphosphate synthase; transferase, structura | 93.36 | |
3oyr_A | 345 | Trans-isoprenyl diphosphate synthase; isoprenyl synthas | 92.65 | |
3nf2_A | 352 | Putative polyprenyl synthetase; isoprenyl diphosphate s | 91.97 | |
3pde_A | 309 | Farnesyl-diphosphate synthase; isoprenyl diphosphate sy | 90.16 | |
1ps1_A | 337 | Pentalenene synthase; antibiotic biosynthesis, sesquite | 95.98 | |
3lk5_A | 380 | Geranylgeranyl pyrophosphate synthase; structural genom | 93.99 | |
1v4e_A | 299 | Octoprenyl-diphosphate synthase; trans-type prenyltrans | 92.44 | |
2e8v_A | 340 | Geranylgeranyl pyrophosphate synthetase; prenyltransfer | 92.27 | |
1uby_A | 367 | FPS, farnesyl diphosphate synthase; transferase, isopre | 90.2 |
>2zco_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation; 1.58A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* | Back alignment and structure |
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Probab=100.00 E-value=0 Score=420.12 Aligned_cols=280 Identities=10% Similarity=0.093 Sum_probs=254.5 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH---HHHHHHHHHHHHHH Q ss_conf 068999999999999985281387998859988806899999999999776036788258999---99999999997740 Q gi|254780161|r 13 EEKIFSRDSLFVLRNLRDIDYDRYLACLLSPPLYRISLSFLYYFHTELMRVRDTARNPITRDM---RLQWWKDIFESSTK 89 (299) Q Consensus 13 ~~~~~~~d~~~c~~~lr~~d~~~y~a~~~lP~~~R~~~~alyaf~re~d~i~d~~~~~~~~~~---rL~~w~~~l~~~~~ 89 (299) ..+++++|++||.+++|++++|||++++|||+++|++++++|+|||.+|||+|+..++..... ++++|..... . T Consensus 6 ~~~~~~~~~~~C~~i~r~~~~sF~~a~~~Lp~~~r~~~~alYaf~R~~Ddi~D~~~~~~~~~~~~~~l~~~~~~~~---~ 82 (293) T 2zco_A 6 AMTMMDMNFKYCHKIMKKHSKSFSYAFDLLPEDQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDIQSIEKYPY---E 82 (293) T ss_dssp -CCHHHHHHHHHHHHHHHHCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHGGGTTSSSHHHHHHHHHHHHHHHCTT---S T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH---H T ss_conf 7766999999999999863966999998789999999999999999988630078966779999999999998677---6 Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH Q ss_conf 17898689899999999986189989999999999853058888998999998644337999999984034303455766 Q gi|254780161|r 90 GLIAESISPFSVELLSIVRQYDLPNQYFLDMIEAHFFDSYNDSIFDCKQFEHYAFRISSRLIHLATMILDSERYSASLRV 169 (299) Q Consensus 90 ~~~~~~~~Pv~~aL~~~~~~~~l~~~~l~~lid~~~~Dl~~~~~~t~~~L~~Y~~~~ag~vg~l~~~i~~~~~~~~~~~~ 169 (299) .....+.|||..+|.+++++++++++++.++|+||++|++.++|+|++||+.||++|||+||+|++.+++..+.....+. T Consensus 83 ~~~~~~~~pv~~al~~~~~~~~l~~~~~~~li~g~~~Dl~~~~~~t~~dL~~Y~~~vAg~VG~l~~~il~~~~~~~~~~~ 162 (293) T 2zco_A 83 YHHFQSDRRIMMALQHVAQHKNIAFQSFYNLIDTVYKDQHFTMFETDAELFGYCYGVAGTVGEVLTPILSDHETHQTYDV 162 (293) T ss_dssp CCCCSSCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHGGGCCCCSSHHHHHHHHHHHTHHHHHHHHHHHCSSCCHHHHHH T ss_pred HCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHH T ss_conf 42688887999999999998499856899999999986243568999999999871302199999999615220027999 Q ss_pred HHHHHHHHHHHHHHHCCHHHHHCCCCCCCHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH Q ss_conf 88999999899887224787634887346789996399977852468998799999999999999999999644528999 Q gi|254780161|r 170 IKYAGIAQFIGQLICQLPIHYHRGQLYFPLDILGAVGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKAREEMRYILPD 249 (299) Q Consensus 170 a~~lG~A~ql~niLRdi~~d~~~gr~yLP~~~l~~~gv~~e~l~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~lp~~ 249 (299) |.++|.|+|+||||||+++|+++||+|||.|+|.+||++++++.++..++++++++.+++++|+.||.+|+.++..+|++ T Consensus 163 A~~lG~AlQltNiLRDi~eD~~~gR~YlP~e~l~~~gv~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~lp~~ 242 (293) T 2zco_A 163 ARRLGESLQLINILRDVGEDFENERIYFSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFRDVMDQIKVFSIE 242 (293) T ss_dssp HHHHHHHHHHHHHHHCHHHHHHTTCCCSCHHHHHHTTCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHTGGGSCTT T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH T ss_conf 99999999999999715989977984288999988599999985576205899989999999999999999868758998 Q ss_pred HHHH-HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 9999-9999999999999996888724589868966799999999862 Q gi|254780161|r 250 VFPA-FIPVSITESVLKHAQNHGFKIVSHSHTPNQLVRPWYMLSSSIK 296 (299) Q Consensus 250 ~r~~-~l~~~~~~~~L~~l~~~~~~v~~~~~~~~~~~~~~~l~r~~~~ 296 (299) .+++ .+++.+|..+|++|++++|+ |..|+.+|+++|.|++++...+ T Consensus 243 ~r~~v~~a~~~y~~il~~i~~~~~~-~~~R~~vs~~~K~~l~~~~~~~ 289 (293) T 2zco_A 243 AQPIIELAARIYIEILDEVRQANYT-LHERVFVEKRKKAKLFHEINSK 289 (293) T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTC-SSSCCCCCHHHHHHHHHHHHTT T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCEECHHHHHHHHHHHHHH T ss_conf 7899999999999999999938998-8789851799999999999998 |
>1ezf_A Farnesyl-diphosphate farnesyltransferase; isoprenoid synthase fold, all alpha-helix; HET: IN0; 2.15A {Homo sapiens} SCOP: a.128.1.2 | Back alignment and structure |
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>3n3d_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.40A {Lactobacillus brevis} | Back alignment and structure |
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>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} | Back alignment and structure |
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>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei} | Back alignment and structure |
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>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural genomics, structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1 | Back alignment and structure |
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>1wy0_A Geranylgeranyl pyrophosphate synthetase; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferase; 2.20A {Pyrococcus horikoshii OT3} | Back alignment and structure |
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>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus} | Back alignment and structure |
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>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus} | Back alignment and structure |
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>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor} | Back alignment and structure |
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>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A* | Back alignment and structure |
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>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A | Back alignment and structure |
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>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative; 1.90A {Corynebacterium glutamicum} | Back alignment and structure |
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>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A | Back alignment and structure |
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>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ... | Back alignment and structure |
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>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A | Back alignment and structure |
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Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | E-value |
299 | phytoene synthase protein [Candidatus Liberibacter asia | |||
d1ezfa_ | 333 | a.128.1.2 (A:) Squalene synthase {Human (Homo sapiens) | 4e-16 |
>d1ezfa_ a.128.1.2 (A:) Squalene synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 333 | Back information, alignment and structure |
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class: All alpha proteins fold: Terpenoid synthases superfamily: Terpenoid synthases family: Squalene synthase domain: Squalene synthase species: Human (Homo sapiens) [TaxId: 9606] Score = 79.0 bits (194), Expect = 4e-16 Identities = 21/246 (8%), Positives = 59/246 (23%), Gaps = 23/246 (9%) Query: 28 LRDIDYDRYLACLLSPPLYRISLSFLYYFHTELMRVRDT-----ARNPITRDMRLQWWKD 82 L R ++ Y +R DT + + L + Sbjct: 10 LNQTSRSFAAVIQALDGEMRNAVCIFYLV----LRALDTLEDDMTISVEKKVPLLHNFHS 65 Query: 83 IFESSTKGLIA---------ESISPFSVELLSIVRQYDLPNQYFLDMIEAHFFDSYNDSI 133 + E S+E ++ +Y + + + + Sbjct: 66 FLYQPDWRFMESKEKDRQVLEDFPTISLEFRNLAEKYQTVIADICRRMGIGMAEFLDKHV 125 Query: 134 FDCKQFEHYAFRISSRLIHLATMIL-----DSERYSASLRVIKYAGIAQFIGQLICQLPI 188 ++++ Y ++ + + + + G+ +I Sbjct: 126 TSEQEWDKYCHYVAGLVGIGLSRLFSASEFEDPLVGEDTERANSMGLFLQKTNIIRDYLE 185 Query: 189 HYHRGQLYFPLDILGAVGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKAREEMRYILP 248 G+ ++P ++ F +N D + L ++ + + Sbjct: 186 DQQGGREFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSRLRN 245 Query: 249 DVFPAF 254 F Sbjct: 246 QSVFNF 251 |
Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | Probability |
Target | 299 | phytoene synthase protein [Candidatus Liberibacter asia | ||
d1ezfa_ | 333 | Squalene synthase {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
d1ps1a_ | 311 | Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: | 96.4 | |
d1v4ea_ | 280 | Octoprenyl-diphosphate synthase {Thermotoga maritima [T | 94.84 | |
d1fpsa_ | 348 | Farnesyl diphosphate synthase (geranyltranstransferase) | 92.86 | |
d1rqja_ | 299 | Farnesyl diphosphate synthase (geranyltranstransferase) | 92.06 | |
d2q80a1 | 291 | Geranylgeranyl pyrophosphate synthetase {Human (Homo sa | 93.77 |
>d1ezfa_ a.128.1.2 (A:) Squalene synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: All alpha proteins fold: Terpenoid synthases superfamily: Terpenoid synthases family: Squalene synthase domain: Squalene synthase species: Human (Homo sapiens) [TaxId: 9606] Probab=100.00 E-value=0 Score=359.03 Aligned_cols=275 Identities=8% Similarity=0.048 Sum_probs=230.0 Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHHHHHHHCCCC--CC Q ss_conf 9999999999852813879988599888068999999999997760367882-58999999999999977401789--86 Q gi|254780161|r 19 RDSLFVLRNLRDIDYDRYLACLLSPPLYRISLSFLYYFHTELMRVRDTARNP-ITRDMRLQWWKDIFESSTKGLIA--ES 95 (299) Q Consensus 19 ~d~~~c~~~lr~~d~~~y~a~~~lP~~~R~~~~alyaf~re~d~i~d~~~~~-~~~~~rL~~w~~~l~~~~~~~~~--~~ 95 (299) +++++|.++++++|+|||+++++||+++|++++++|+|||.+|+|+|+...+ ..+...|.+|++.+.....+... .. T Consensus 1 ~sl~~C~~~l~~~SrSF~~a~~~Lp~~~R~~v~~lYafcR~~DdI~D~~~~~~~~k~~~L~~~~~~l~~~~~~~~~~~~~ 80 (333) T d1ezfa_ 1 NSLKTCYKYLNQTSRSFAAVIQALDGEMRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQPDWRFMESKEK 80 (333) T ss_dssp CHHHHHHHHHHHHCSSHHHHHHTSCTHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHTTCTTCCCCCCCST T ss_pred CHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 95999999998439419999987899999999999999998555473899998999999999999998744201035820 Q ss_pred CC-------HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCH----- Q ss_conf 89-------899999999986189989999999999853058888998999998644337999999984034303----- Q gi|254780161|r 96 IS-------PFSVELLSIVRQYDLPNQYFLDMIEAHFFDSYNDSIFDCKQFEHYAFRISSRLIHLATMILDSERY----- 163 (299) Q Consensus 96 ~~-------Pv~~aL~~~~~~~~l~~~~l~~lid~~~~Dl~~~~~~t~~~L~~Y~~~~ag~vg~l~~~i~~~~~~----- 163 (299) .+ ||..++..+...+..+...+.+.+++++.|....+++|++||+.|||+|||+||+|++.+++..+. T Consensus 81 ~~~ll~~~~~v~~~~~~l~~~~~~~i~~~~~~m~~gm~d~~~~~~~t~~dL~~Ycy~VAG~VG~~l~~l~~~~~~~~~~~ 160 (333) T d1ezfa_ 81 DRQVLEDFPTISLEFRNLAEKYQTVIADICRRMGIGMAEFLDKHVTSEQEWDKYCHYVAGLVGIGLSRLFSASEFEDPLV 160 (333) T ss_dssp THHHHHTHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTHHHHHHHHHHHHHHTSSCHHH T ss_pred HHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH T ss_conf 27888604499999999898845125779999826478872676899999999999999999999999957677763007 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 45576688999999899887224787634887346789996399977852468998799999999999999999999644 Q gi|254780161|r 164 SASLRVIKYAGIAQFIGQLICQLPIHYHRGQLYFPLDILGAVGLDRESFLSGQNSDRISLAIKIFAELGLKYLFKAREEM 243 (299) Q Consensus 164 ~~~~~~a~~lG~A~ql~niLRdi~~d~~~gr~yLP~~~l~~~gv~~e~l~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~ 243 (299) +...+.|.++|.|+|+||||||+++|+++||||||.++|.+||++++++.+++.++++..++.+++++|+.||.+|.+++ T Consensus 161 ~~~~~~A~~lG~AlQltNIlRDi~eD~~~gR~YlP~e~l~~~g~~~~dl~~~~~~~~~~~~~~~l~~~A~~~~~~a~~y~ 240 (333) T d1ezfa_ 161 GEDTERANSMGLFLQKTNIIRDYLEDQQGGREFWPQEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDVITYL 240 (333) T ss_dssp HHCHHHHHHHHHHHHHHHHHHTHHHHHHHTCCCSCHHHHTTTCSSGGGGGSGGGHHHHHHHHHHHHHHHHTTHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999898899735789968967777799988399999997420317899999999999999999999999 Q ss_pred HHCCHHHHHHH-HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 52899999999-999999999999996888724589868966799999999 Q gi|254780161|r 244 RYILPDVFPAF-IPVSITESVLKHAQNHGFKIVSHSHTPNQLVRPWYMLSS 293 (299) Q Consensus 244 ~~lp~~~r~~~-l~~~~~~~~L~~l~~~~~~v~~~~~~~~~~~~~~~l~r~ 293 (299) ..+|.+.+..| +...++..+.-++.++|+++|++++.++...+..++.++ T Consensus 241 ~~lp~~~~~~~~~~~~~~a~~tl~~~~~~~~~~~~~vkisr~~~~~l~~~~ 291 (333) T d1ezfa_ 241 SRLRNQSVFNFCAIPQVMAIATLAACYNNQQVFKGAVKIRKGQAVTLMMDA 291 (333) T ss_dssp HTCCCHHHHHHHHHHHHHHHHHHHHHTTCGGGGTSCCCC----------CT T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCEEEEHHHHHHHHHHH T ss_conf 878922589999999999999999997391531798576499999999980 |
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} | Back information, alignment and structure |
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>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
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>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 299 | phytoene synthase protein [Candidatus Liberibacter | ||
2zco_A_106-239 | 134 | (A:106-239) Dehydrosqualene synthase; CRTM, carote | 7e-16 | |
1ezf_A_132-340 | 209 | (A:132-340) Farnesyl-diphosphate farnesyltransfera | 6e-13 | |
1ezf_A_1-131 | 131 | (A:1-131) Farnesyl-diphosphate farnesyltransferase | 3e-10 | |
2zco_A_1-105_240-293 | 159 | (A:1-105,A:240-293) Dehydrosqualene synthase; CRTM | 5e-07 |
>2zco_A (A:106-239) Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation; 1.58A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A*Length = 134 | Back alignment and structure |
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Score = 78.9 bits (194), Expect = 7e-16 Identities = 16/134 (11%), Positives = 47/134 (35%) Query: 113 PNQYFLDMIEAHFFDSYNDSIFDCKQFEHYAFRISSRLIHLATMILDSERYSASLRVIKY 172 Q F ++I+ + D + + Y + ++ + + T IL + V + Sbjct: 1 AFQSFYNLIDTVYKDQHFTMFETDAELFGYCYGVAGTVGEVLTPILSDHETHQTYDVARR 60 Query: 173 AGIAQFIGQLICQLPIHYHRGQLYFPLDILGAVGLDRESFLSGQNSDRISLAIKIFAELG 232 G + + ++ + + ++YF L +D ++ + +A + Sbjct: 61 LGESLQLINILRDVGEDFENERIYFSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIA 120 Query: 233 LKYLFKAREEMRYI 246 K ++++ Sbjct: 121 EKDFRDVMDQIKVF 134 |
>1ezf_A (A:132-340) Farnesyl-diphosphate farnesyltransferase; isoprenoid synthase fold, all alpha-helix; HET: IN0; 2.15A {Homo sapiens}Length = 209 | Back alignment and structure |
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>1ezf_A (A:1-131) Farnesyl-diphosphate farnesyltransferase; isoprenoid synthase fold, all alpha-helix; HET: IN0; 2.15A {Homo sapiens}Length = 131 | Back alignment and structure |
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>2zco_A (A:1-105,A:240-293) Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation; 1.58A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A*Length = 159 | Back alignment and structure |
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Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 299 | phytoene synthase protein [Candidatus Liberibacter asia | ||
1ezf_A_132-340 | 209 | Farnesyl-diphosphate farnesyltransferase; isopreno | 100.0 | |
2zco_A_1-105_240-293 | 159 | Dehydrosqualene synthase; CRTM, carotenoid biosynt | 95.46 | |
2zco_A_106-239 | 134 | Dehydrosqualene synthase; CRTM, carotenoid biosynt | 99.97 | |
1v4e_A_125-299 | 175 | Octoprenyl-diphosphate synthase; trans-type prenyl | 97.55 | |
2q80_A_109-281 | 173 | Geranylgeranyl pyrophosphate synthetase; isoprenoi | 96.65 | |
3ipi_A_ | 295 | Geranyltranstransferase; isoprene biosynthesis, he | 96.37 | |
3lmd_A_ | 360 | Geranylgeranyl pyrophosphate synthase; isoprenyl d | 95.98 | |
2her_A_ | 368 | Fragment, farnesyl pyrophosphate synthase; farnesy | 94.35 | |
1wy0_A_ | 342 | Geranylgeranyl pyrophosphate synthetase; structura | 91.16 | |
1rqj_A_ | 299 | Geranyltranstransferase; bisphosphonate, isoprenyl | 90.74 | |
1ezf_A_1-131 | 131 | Farnesyl-diphosphate farnesyltransferase; isopreno | 99.89 | |
2zco_A_1-105_240-293 | 159 | Dehydrosqualene synthase; CRTM, carotenoid biosynt | 99.84 | |
2azj_A_133-289 | 157 | Geranylgeranyl pyrophosphate synthetase; hexpps, t | 94.43 | |
2ftz_A_131-266 | 136 | Geranyltranstransferase; TM0161, structural genomi | 92.32 | |
2j1p_A_ | 293 | Geranylgeranyl pyrophosphate synthetase; transfera | 91.14 | |
1di1_A_ | 300 | Aristolochene synthase; sesquiterpene cyclase, iso | 94.0 | |
5eau_A_261-527 | 267 | 5-EPI-aristolochene synthase; isoprenoid synthase, | 92.57 | |
1ps1_A_ | 337 | Pentalenene synthase; antibiotic biosynthesis, ses | 93.94 | |
2e8v_A_195-340 | 146 | Geranylgeranyl pyrophosphate synthetase; prenyltra | 90.93 | |
2qis_A_241-374 | 134 | Farnesyl pyrophosphate synthetase; trans-prenyltra | 90.08 |
>1ezf_A (A:132-340) Farnesyl-diphosphate farnesyltransferase; isoprenoid synthase fold, all alpha-helix; HET: IN0; 2.15A {Homo sapiens} | Back alignment and structure |
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Probab=100.00 E-value=1.1e-33 Score=246.76 Aligned_cols=165 Identities=7% Similarity=0.040 Sum_probs=153.1 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCCC-----HHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCHHHHHHCCC Q ss_conf 899899999864433799999998403430-----345576688999999899887224787634887346789996399 Q gi|254780161|r 133 IFDCKQFEHYAFRISSRLIHLATMILDSER-----YSASLRVIKYAGIAQFIGQLICQLPIHYHRGQLYFPLDILGAVGL 207 (299) Q Consensus 133 ~~t~~~L~~Y~~~~ag~vg~l~~~i~~~~~-----~~~~~~~a~~lG~A~ql~niLRdi~~d~~~gr~yLP~~~l~~~gv 207 (299) .+|++||+.||++|||+||+|++.+++... .+...+.+.|+|.|+|+||||||+++|+++||+|||.|+|.+||+ T Consensus 1 i~t~~eL~~Yc~~vAg~vg~l~~~il~~~~~~~~~~~~~~~~A~~lG~AlqltniLRDi~~D~~~gr~yLP~e~L~~~gv 80 (209) T 1ezf_A 1 VTSEQEWDKYCHYVAGLVGIGLSRLFSASEFEDPLVGEDTERANSMGLFLQKTNIIRDYLEDQQGGREFWPQEVWSRYVK 80 (209) T ss_dssp CCSHHHHHHHHHHHTHHHHHHHHHHHHHHTSSCHHHHHCHHHHHHHHHHHHHHHHHHTHHHHHHHTCCCSCHHHHTTTCS T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHCCC T ss_conf 89999999999980269999999996768875120598999999999999999999976989957975686999988599 Q ss_pred CHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH-HHHHHHHHHHHHHCCCCCCCCCCCCCHHHH Q ss_conf 9778524689987999999999999999999996445289999999999-999999999999688872458986896679 Q gi|254780161|r 208 DRESFLSGQNSDRISLAIKIFAELGLKYLFKAREEMRYILPDVFPAFIP-VSITESVLKHAQNHGFKIVSHSHTPNQLVR 286 (299) Q Consensus 208 ~~e~l~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~lp~~~r~~~l~-~~~~~~~L~~l~~~~~~v~~~~~~~~~~~~ 286 (299) +++++.+++.+++++.++++++++|+.||.+|+++.+.+|+..++++.+ ..++..+|.+++++||++|++++.++++++ T Consensus 81 ~~e~l~~~~~~~~~~~~~~~l~~~A~~~l~~a~~~~~~lp~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~r~~~~~~~~ 160 (209) T 1ezf_A 81 KLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSRLRNQSVFNFCAIPQVMAIATLAACYNNQQVFKGAVKIRKGQA 160 (209) T ss_dssp SGGGGGSGGGHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHTTCGGGGTSCCCC----- T ss_pred CHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHH T ss_conf 99998577688999999999999999999999999987896147899999999999999999679401278705509999 Q ss_pred HHHHHHHHHHC Q ss_conf 99999998627 Q gi|254780161|r 287 PWYMLSSSIKK 297 (299) Q Consensus 287 ~~~l~r~~~~~ 297 (299) .|++|++.+++ T Consensus 161 ~~l~~~a~~~~ 171 (209) T 1ezf_A 161 VTLMMDATNMP 171 (209) T ss_dssp -----CTTSHH T ss_pred HHHHHHCCCHH T ss_conf 99999648789 |
>2zco_A (A:1-105,A:240-293) Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation; 1.58A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* | Back alignment and structure |
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>2zco_A (A:106-239) Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation; 1.58A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* | Back alignment and structure |
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>1v4e_A (A:125-299) Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} | Back alignment and structure |
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>2q80_A (A:109-281) Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural genomics, structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} | Back alignment and structure |
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>3ipi_A (A:) Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei} | Back alignment and structure |
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>3lmd_A (A:) Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} | Back alignment and structure |
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>1wy0_A (A:) Geranylgeranyl pyrophosphate synthetase; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferase; 2.20A {Pyrococcus horikoshii OT3} | Back alignment and structure |
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>1rqj_A (A:) Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} | Back alignment and structure |
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>1ezf_A (A:1-131) Farnesyl-diphosphate farnesyltransferase; isoprenoid synthase fold, all alpha-helix; HET: IN0; 2.15A {Homo sapiens} | Back alignment and structure |
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>2zco_A (A:1-105,A:240-293) Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation; 1.58A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* | Back alignment and structure |
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>2azj_A (A:133-289) Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A | Back alignment and structure |
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>2ftz_A (A:131-266) Geranyltranstransferase; TM0161, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima MSB8} | Back alignment and structure |
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>2j1p_A (A:) Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A | Back alignment and structure |
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>1di1_A (A:) Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis; 2.50A {Penicillium roqueforti} | Back alignment and structure |
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>5eau_A (A:261-527) 5-EPI-aristolochene synthase; isoprenoid synthase, natural products biosynthesis, isoprenoid cyclase; HET: FFF; 2.15A {Nicotiana tabacum} | Back alignment and structure |
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>1ps1_A (A:) Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} | Back alignment and structure |
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>2e8v_A (A:195-340) Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ... | Back alignment and structure |
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>2qis_A (A:241-374) Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural genomics consortium, SGC; HET: RIS; 1.80A {Homo sapiens} PDB: 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 2f94_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* | Back alignment and structure |
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