254780180
S-adenosylmethionine:tRNA ribosyltransferase-isomerase
GeneID in NCBI database: | 8209160 | Locus tag: | CLIBASIA_00315 |
Protein GI in NCBI database: | 254780180 | Protein Accession: | YP_003064593.1 |
Gene range: | -(60341, 61423) | Protein Length: | 360aa |
Gene description: | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | ||
COG prediction: | [J] S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) | ||
KEGG prediction: | queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC:5.-.-.-); K07568 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:5.-.-.-] | ||
SEED prediction: | S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) | ||
Pathway involved in KEGG: | not defined | ||
Subsystem involved in SEED: | Queuosine-Archaeosine Biosynthesis; | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 360 | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | |||
315122778 | 359 | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | 1 | 1e-170 | |
325293064 | 374 | S-adenosylmethionine tRNA ribosyltransferase [Agrobacte | 1 | 1e-123 | |
222148799 | 352 | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | 1 | 1e-122 | |
327193336 | 366 | S-adenosylmethionine: tRNA ribosyltransferase-isomerase | 1 | 1e-122 | |
159184871 | 366 | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | 1 | 1e-121 | |
227822132 | 366 | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | 1 | 1e-120 | |
190891762 | 373 | S-adenosylmethionine: tRNA ribosyltransferase-isomerase | 1 | 1e-120 | |
86357735 | 361 | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | 1 | 1e-119 | |
222085994 | 360 | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | 1 | 1e-119 | |
241204662 | 361 | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | 1 | 1e-118 |
>gi|315122778|ref|YP_004063267.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 359 | Back alignment and organism information |
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Score = 602 bits (1553), Expect = e-170, Method: Compositional matrix adjust. Identities = 285/359 (79%), Positives = 321/359 (89%) Query: 1 MMVKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIV 60 MMVKEFDF LP SRIALRPV PRDSARLMVV+PNLSC +ISD+ V DLP FLNSNDAIV Sbjct: 1 MMVKEFDFHLPSSRIALRPVSPRDSARLMVVYPNLSCSQMISDYSVRDLPIFLNSNDAIV 60 Query: 61 FNNTKVITAQLNGVRFCHINRREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQ 120 FNNTKVI AQL G R N E ISCTLHMR+S NSWS Y RP K+I++GD ++FFSQ Sbjct: 61 FNNTKVIAAQLRGRRLRRTNDSEHWISCTLHMRISSNSWSAYVRPGKIIRQGDTIYFFSQ 120 Query: 121 DGQSRLEATVIDKWNTGEILLVFSISGIELERQISLVGTIPLPPYIARKRPIDARDYVDY 180 DGQS+LEA VI+K +TGEILLVF +SG EL+RQI+L+GT+PLPPYIA+KRPID RDYVDY Sbjct: 121 DGQSKLEANVIEKRDTGEILLVFPLSGTELDRQIALIGTMPLPPYIAKKRPIDERDYVDY 180 Query: 181 QTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIM 240 QTTYA IQGSVAAPTAGLHFTS+LLS+L+S+G+ VYF+TLHVGAGTFMPV+VEDTDDHIM Sbjct: 181 QTTYASIQGSVAAPTAGLHFTSDLLSKLVSMGVAVYFITLHVGAGTFMPVRVEDTDDHIM 240 Query: 241 HSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIFITPG 300 HSEIGFIDA TAQ LN+VK RGGRIV+VGTTSLRLLETATTEDGII P SG+TNIFITPG Sbjct: 241 HSEIGFIDAQTAQDLNAVKLRGGRIVAVGTTSLRLLETATTEDGIIMPLSGYTNIFITPG 300 Query: 301 YRFRAVDILMSNFHLPKSTLLMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLLFQK 359 YRFRAVD+L+SNFHLPKSTLLMLVSAFCG+EETK MYQHAI+++YRFYSYGD SL+F+K Sbjct: 301 YRFRAVDVLLSNFHLPKSTLLMLVSAFCGVEETKTMYQHAIANSYRFYSYGDASLIFKK 359 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|325293064|ref|YP_004278928.1| S-adenosylmethionine tRNA ribosyltransferase [Agrobacterium sp. H13-3] Length = 374 | Back alignment and organism information |
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>gi|222148799|ref|YP_002549756.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Agrobacterium vitis S4] Length = 352 | Back alignment and organism information |
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>gi|327193336|gb|EGE60240.1| S-adenosylmethionine: tRNA ribosyltransferase-isomerase (Queuosine biosynthesis) protein [Rhizobium etli CNPAF512] Length = 366 | Back alignment and organism information |
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>gi|159184871|ref|NP_354665.2| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Agrobacterium tumefaciens str. C58] Length = 366 | Back alignment and organism information |
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>gi|227822132|ref|YP_002826103.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Sinorhizobium fredii NGR234] Length = 366 | Back alignment and organism information |
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>gi|190891762|ref|YP_001978304.1| S-adenosylmethionine: tRNA ribosyltransferase-isomerase (Queuosine biosynthesis) protein [Rhizobium etli CIAT 652] Length = 373 | Back alignment and organism information |
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>gi|86357735|ref|YP_469627.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Rhizobium etli CFN 42] Length = 361 | Back alignment and organism information |
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>gi|222085994|ref|YP_002544526.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Agrobacterium radiobacter K84] Length = 360 | Back alignment and organism information |
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>gi|241204662|ref|YP_002975758.1| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 361 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 360 | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | ||
PRK00147 | 342 | PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransf | 1e-141 | |
TIGR00113 | 344 | TIGR00113, queA, S-adenosylmethionine:tRNA ribosyltrans | 2e-91 | |
PRK01424 | 366 | PRK01424, PRK01424, S-adenosylmethionine:tRNA ribosyltr | 4e-78 | |
COG0809 | 348 | COG0809, QueA, S-adenosylmethionine:tRNA-ribosyltransfe | 1e-119 | |
pfam02547 | 218 | pfam02547, Queuosine_synth, Queuosine biosynthesis prot | 5e-69 |
>gnl|CDD|178900 PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional | Back alignment and domain information |
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>gnl|CDD|161715 TIGR00113, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase | Back alignment and domain information |
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>gnl|CDD|134556 PRK01424, PRK01424, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional | Back alignment and domain information |
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>gnl|CDD|31151 COG0809, QueA, S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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>gnl|CDD|145599 pfam02547, Queuosine_synth, Queuosine biosynthesis protein | Back alignment and domain information |
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Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 360 | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | ||
PRK00147 | 345 | queA S-adenosylmethionine:tRNA ribosyltransferase-isome | 100.0 | |
COG0809 | 348 | QueA S-adenosylmethionine:tRNA-ribosyltransferase-isome | 100.0 | |
TIGR00113 | 364 | queA S-adenosylmethionine:tRNA ribosyltransferase-isome | 100.0 | |
PRK01424 | 366 | S-adenosylmethionine:tRNA ribosyltransferase-isomerase; | 100.0 | |
pfam02547 | 218 | Queuosine_synth Queuosine biosynthesis protein. Queuosi | 100.0 | |
TIGR00630 | 956 | uvra excinuclease ABC, A subunit; InterPro: IPR004602 A | 95.48 | |
TIGR03470 | 318 | HpnH hopanoid biosynthesis associated radical SAM prote | 91.14 |
>PRK00147 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional | Back alignment and domain information |
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>COG0809 QueA S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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>TIGR00113 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase; InterPro: IPR003699 Queuosine is a hypermodified nucleoside that usually occurs in the first position of the anticodon of tRNAs specifying the amino acids asparagine, aspartate, histidine, and tyrosine | Back alignment and domain information |
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>PRK01424 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional | Back alignment and domain information |
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>pfam02547 Queuosine_synth Queuosine biosynthesis protein | Back alignment and domain information |
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>TIGR00630 uvra excinuclease ABC, A subunit; InterPro: IPR004602 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems | Back alignment and domain information |
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>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH | Back alignment and domain information |
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Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
Identity | Alignment graph | Length | Definition | E-value |
Target | 360 | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | ||
1vky_A | 347 | Crystal Structure Of S-Adenosylmethionine Trna Ribo | 1e-113 | |
1yy3_A | 346 | Structure Of S-Adenosylmethionine:trna Ribosyltrans | 1e-113 | |
1wdi_A | 345 | Crystal Structure Of Tt0907 From Thermus Thermophil | 1e-102 |
>gi|52696131|pdb|1VKY|A Chain A, Crystal Structure Of S-Adenosylmethionine Trna Ribosyltransferase (Tm0574) From Thermotoga Maritima At 2.00 A Resolution Length = 347 | Back alignment and structure |
Score = 412 bits (1058), Expect = e-113, Method: Composition-based stats. Identities = 140/357 (39%), Positives = 191/357 (53%), Gaps = 22/357 (6%) Query: 1 MMVKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIV 60 M V EFD++LPP IA PV PRD++RLMV+H I + ++ +L D +V Sbjct: 13 MKVSEFDYELPPELIAQEPVEPRDASRLMVLHRKTQ---RIEHRIFREIIEYLEPGDLLV 69 Query: 61 FNNTKVITAQLNGVRFCHINRREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQ 120 N +KVI A+L + + I L R+ W RP + +KKG L Sbjct: 70 LNVSKVIPARLYARK-----KTGASIEILLIERLEEGIWKCLVRPGQKVKKGTELVI--- 121 Query: 121 DGQSRLEATVIDKWNTGEILLVFSISGIELERQISLVGTIPLPPYIARKRPIDARDYVDY 180 L A + + G +L F L + G PLPPYI + Y Sbjct: 122 --DEDLSAVCLGRGEDGTRILKFQPQDDRLIFEK---GRTPLPPYIK-----NEVPLERY 171 Query: 181 QTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIM 240 QT YAK +GSVAAPTAGLHFT L+ +L G++ V LHVG GTF PVKVE+ + H M Sbjct: 172 QTVYAKEEGSVAAPTAGLHFTPELIEKLKKKGVQFAEVVLHVGIGTFRPVKVEEVEKHKM 231 Query: 241 HSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIFITPG 300 H E + T + L + RG RIV+VGTT++R LET + G T++FI P Sbjct: 232 HEEFYQVPKETVRKLRETRERGNRIVAVGTTTVRTLETIARLP-EQEEYVGKTDLFIYPP 290 Query: 301 YRFRAVDILMSNFHLPKSTLLMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLLF 357 + F+ VD L++NFHLP+STLLMLV+AF G + + Y+ A+ YRF+S+GD L+ Sbjct: 291 FEFKLVDALVTNFHLPRSTLLMLVAAFAGKDFVMEAYREAVKRRYRFFSFGDAMLIL 347 |
>gi|93278505|pdb|1YY3|A Chain A, Structure Of S-Adenosylmethionine:trna Ribosyltransferase- Isomerase (Quea) Length = 346 | Back alignment and structure |
gi|56966767|pdb|1WDI|A Chain A, Crystal Structure Of Tt0907 From Thermus Thermophilus Hb8 Length = 345 | Back alignment and structure |
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 360 | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | ||
1yy3_A | 346 | S-adenosylmethionine:tRNA ribosyltransferase- isomerase | 3e-95 | |
1vky_A | 347 | S-adenosylmethionine:tRNA ribosyltransferase- isomerase | 1e-91 | |
1wdi_A | 345 | Hypothetical protein TT0907; structural genomics, riken | 1e-91 |
>1yy3_A S-adenosylmethionine:tRNA ribosyltransferase- isomerase; beta-barrel, QUEA, quein queuosine, tRNA- modification; 2.88A {Bacillus subtilis} Length = 346 | Back alignment and structure |
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Score = 343 bits (882), Expect = 3e-95 Identities = 149/357 (41%), Positives = 210/357 (58%), Gaps = 17/357 (4%) Query: 1 MMVKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIV 60 V FDF+LP IA P+ RD++RLMV+ + ++D + +F N D +V Sbjct: 5 SKVDLFDFELPERLIAQVPLEQRDASRLMVLDKHTG---ELTDSSFKHIISFFNEGDCLV 61 Query: 61 FNNTKVITAQLNGVRFCHINRREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQ 120 NNT+V+ A+L G + + E L + + + W A+P+K +KKG ++ F Sbjct: 62 LNNTRVLPARLFGTKEDTGAKVE----LLLLKQETGDKWETLAKPAKRVKKGTVVTF--- 114 Query: 121 DGQSRLEATVIDKWNTGEILLVFSISGIELERQISLVGTIPLPPYIARKRPIDARDYVDY 180 G RL+A ++ G + F GI E + +G +PLPPYI + D Y Sbjct: 115 -GDGRLKAICTEELEHGGRKMEFQYDGIFYEV-LESLGEMPLPPYIKEQLD----DKERY 168 Query: 181 QTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIM 240 QT Y+K GS AAPTAGLHFT +L +L G+++ F+TLHVG GTF PV ++ ++H M Sbjct: 169 QTVYSKEIGSAAAPTAGLHFTEEILQQLKDKGVQIEFITLHVGLGTFRPVSADEVEEHNM 228 Query: 241 HSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLET-ATTEDGIINPWSGFTNIFITP 299 H+E + TA ALN V+ GGRI+SVGTTS R LET A DG SG+T+IFI P Sbjct: 229 HAEFYQMSEETAAALNKVRENGGRIISVGTTSTRTLETIAGEHDGQFKASSGWTSIFIYP 288 Query: 300 GYRFRAVDILMSNFHLPKSTLLMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLL 356 GY F+A+D +++NFHLPKS+L+MLVSA G E + Y HA+ YRF+S+GD L+ Sbjct: 289 GYEFKAIDGMITNFHLPKSSLIMLVSALAGRENILRAYNHAVEEEYRFFSFGDAMLI 345 |
>1vky_A S-adenosylmethionine:tRNA ribosyltransferase- isomerase; TM0574, structural genomics, JCSG, protein structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: e.53.1.1 Length = 347 | Back alignment and structure |
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>1wdi_A Hypothetical protein TT0907; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; HET: CIT; 2.10A {Thermus thermophilus} SCOP: e.53.1.1 Length = 345 | Back alignment and structure |
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Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 360 | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | ||
1vky_A | 347 | S-adenosylmethionine:tRNA ribosyltransferase- isomerase | 100.0 | |
1yy3_A | 346 | S-adenosylmethionine:tRNA ribosyltransferase- isomerase | 100.0 | |
1wdi_A | 345 | Hypothetical protein TT0907; structural genomics, riken | 100.0 |
>1vky_A S-adenosylmethionine:tRNA ribosyltransferase- isomerase; TM0574, structural genomics, JCSG, protein structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: e.53.1.1 | Back alignment and structure |
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Probab=100.00 E-value=0 Score=1022.95 Aligned_cols=335 Identities=42% Similarity=0.683 Sum_probs=317.8 Q ss_pred CCCCCCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEEHHHHHHHCCCCCEEEEECCCEEEEEEEEEEECCCC Q ss_conf 98633588889778616998781203135663788875315310143478726988799994795688899876404677 Q gi|254780180|r 1 MMVKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIVFNNTKVITAQLNGVRFCHIN 80 (360) Q Consensus 1 M~lsdfDy~LP~elIAq~P~~~Rd~SRLLV~~r~~~~~~~i~h~~F~dl~~~L~~gDLLV~NnTKVipARL~g~k~~~~~ 80 (360) |+||||||+||+|||||+|+++||+|||||++++++ .|.|+.|+||++||+||||||||||||+||||+|+| T Consensus 13 Mklsdfdy~LP~elIAq~P~~~Rd~SRLLVl~~~~~---~i~h~~F~dl~~~L~~gDlLV~NdTkVipARL~g~k----- 84 (347) T 1vky_A 13 MKVSEFDYELPPELIAQEPVEPRDASRLMVLHRKTQ---RIEHRIFREIIEYLEPGDLLVLNVSKVIPARLYARK----- 84 (347) T ss_dssp ---CTTCCCCCGGGBCSSCCSSGGGSEEEEEETTTT---EEEEEEGGGGGGGCCTTCEEEEEEEECCSCEEEEBC----- T ss_pred EEHHHCCCCCCHHHHCCCCCCCCCCCEEEEEECCCC---CEEEEEHHHHHHHCCCCCEEEEECCEEEEEEEEEEE----- T ss_conf 588783989895996689999965144889988999---077756765686479998999979989887998774----- Q ss_pred CCCCEEEEEEECCCCCCCHHHHHHCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCEEEEECCCCCCHHHHHHHHHCC Q ss_conf 77650589981124866101122115643698579970578874069999603557724999726786300025442035 Q gi|254780180|r 81 RREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQDGQSRLEATVIDKWNTGEILLVFSISGIELERQISLVGTI 160 (360) Q Consensus 81 ~~g~~ieill~~~~~~~~w~~l~kp~kklk~G~~l~~~~~~~~~~l~~~vi~~~~~g~~~i~f~~~~~~~~~~L~~~G~i 160 (360) .+|++||++++++.+++.|.|++||+||+|+|+++.+.+ .+.++++++.+.+.+.+.|+.+ .+++|+++|+| T Consensus 85 ~tgg~vEill~~~~~~~~w~~likp~kk~k~g~~l~~~~-----~~~~~v~~~~~~~~~~~~~~~~---~~~~l~~~G~~ 156 (347) T 1vky_A 85 KTGASIEILLIERLEEGIWKCLVRPGQKVKKGTELVIDE-----DLSAVCLGRGEDGTRILKFQPQ---DDRLIFEKGRT 156 (347) T ss_dssp ---CCEEEEEEEEEETTEEEEEEESCTTCCTTCEEEEET-----TEEEEEEEECTTSCEEEEEESC---CHHHHHHHC-- T ss_pred CCCCEEEEEEEEECCCCEEEEEEECCCCCCCCCEEEECC-----CCEEEEEEEECCCCEEEECCCC---HHHHHHHCCCC T ss_conf 379709999977528983999974076789998899605-----6348999971476078851774---26899977999 Q ss_pred CCCHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCC Q ss_conf 78522212345652114331013456757400555688789999999997215530378731656657887410135667 Q gi|254780180|r 161 PLPPYIARKRPIDARDYVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIM 240 (360) Q Consensus 161 PLPPYI~r~r~~~~~D~~~YQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~m 240 (360) ||||||+| + .|.+|||||||+++|||||||||||||++||++|++|||++++||||||+|||+||++|+|++|+| T Consensus 157 PLPPYI~r--~---~d~erYQTVyAk~~GSVAAPTAGLHFT~~ll~~L~~kGv~~~~vTLHVG~GTF~Pv~~e~i~~H~m 231 (347) T 1vky_A 157 PLPPYIKN--E---VPLERYQTVYAKEEGSVAAPTAGLHFTPELIEKLKKKGVQFAEVVLHVGIGTFRPVKVEEVEKHKM 231 (347) T ss_dssp ----------------------------------CGGGGCCHHHHHHHHHHTCEEEEEEEEC------------------ T ss_pred CCCCEEEC--C---CCHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCC T ss_conf 99961745--6---418878788714898553677878779999999998499267789986467546764443455788 Q ss_pred CCHHEEECHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCEEEEEEEECCCCCHHHH Q ss_conf 70007785999999998753798099962878998999985289846888722366574096114312552775545789 Q gi|254780180|r 241 HSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIFITPGYRFRAVDILMSNFHLPKSTL 320 (360) Q Consensus 241 H~E~~~i~~~~~~~I~~ak~~g~rIiAVGTT~~R~LEs~~~~~~~~~~~~g~T~lfI~Pg~~f~~vd~LiTNFH~P~Stl 320 (360) |+|||+||++|+++||+||++|+|||||||||||||||++. +|.+++++|||||||+|||+|++||+||||||+||||| T Consensus 232 H~E~~~I~~~ta~~I~~ak~~g~RIiAVGTT~~RaLEs~~~-~~~~~~~~G~T~lfI~Pgy~fkvvD~LiTNFHlPkSTL 310 (347) T 1vky_A 232 HEEFYQVPKETVRKLRETRERGNRIVAVGTTTVRTLETIAR-LPEQEEYVGKTDLFIYPPFEFKLVDALVTNFHLPRSTL 310 (347) T ss_dssp CCCEEEECHHHHHHHHHHHHHTCCEEEESHHHHHHHHHHTT-SCCCSSEEECCCCCCCSSCCCSSCSEEEEECCCTTCHH T ss_pred CCEEEEECHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHH-HCCCCCCCCCCCEEECCCCCCCEECEEEECCCCCCCHH T ss_conf 65589937999999999997189489995418999999875-13677778861559789998728276343573783589 Q ss_pred HHHHHHHHCHHHHHHHHHHHHHCCCEEECCCCHHHCC Q ss_conf 9999987198999999999998698261101022233 Q gi|254780180|r 321 LMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLLF 357 (360) Q Consensus 321 l~Lv~Af~G~~~~~~~Y~~Ai~~~yrF~syGDamLi~ 357 (360) |||||||+|+++++++|++||+++||||||||||||+ T Consensus 311 l~LvsAf~G~~~~~~aY~~Ai~~~YrF~SyGDamLil 347 (347) T 1vky_A 311 LMLVAAFAGKDFVMEAYREAVKRRYRFFSFGDAMLIL 347 (347) T ss_dssp HHHHHHHHCHHHHHHHHHHHHHTTCCBSTTSCEEEEC T ss_pred HHHHHHHCCHHHHHHHHHHHHHCCCCEECCCHHHEEC T ss_conf 9999985896999999999998799601502230109 |
>1yy3_A S-adenosylmethionine:tRNA ribosyltransferase- isomerase; beta-barrel, QUEA, quein queuosine, tRNA- modification; 2.88A {Bacillus subtilis} | Back alignment and structure |
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>1wdi_A Hypothetical protein TT0907; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; HET: CIT; 2.10A {Thermus thermophilus} SCOP: e.53.1.1 | Back alignment and structure |
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Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | E-value |
360 | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | |||
d1wdia_ | 344 | e.53.1.1 (A:) Queuosine biosynthesis protein queA {Ther | 3e-91 | |
d1vkya_ | 332 | e.53.1.1 (A:) Queuosine biosynthesis protein queA {Ther | 3e-87 |
>d1wdia_ e.53.1.1 (A:) Queuosine biosynthesis protein queA {Thermus thermophilus [TaxId: 274]} Length = 344 | Back information, alignment and structure |
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class: Multi-domain proteins (alpha and beta) fold: QueA-like superfamily: QueA-like family: QueA-like domain: Queuosine biosynthesis protein queA species: Thermus thermophilus [TaxId: 274] Score = 329 bits (844), Expect = 3e-91 Identities = 149/355 (41%), Positives = 196/355 (55%), Gaps = 19/355 (5%) Query: 5 EFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIVFNNT 64 +D+ LPP +IA V PRD ARLMVV+ P ++ V DLP FL D +VFN + Sbjct: 5 AYDYHLPPEQIAQEGVEPRDMARLMVVYRE--GPFRVAHKRVRDLPEFLRPGDVLVFNES 62 Query: 65 KVITAQLNGVRFCHINRREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQDGQS 124 KVI A+L + ++ L SP W P++ G L S + Sbjct: 63 KVIPARLLARKPTG-----GKVEILLVRERSPGLWEALLGPARKAPPGTRLLLLSPKDLA 117 Query: 125 R---LEATVIDKWNTGEILLVFSISGIELERQISLVGTIPLPPYIARKRPIDARDYVDYQ 181 L+A V+ G LL F + ++ +PLPPYI K P YQ Sbjct: 118 PVPGLQAEVVAVEEDGVRLLRFQGDLVAHLEEVG---EVPLPPYIKAKIP-----MERYQ 169 Query: 182 TTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMH 241 T YA+ GSVAAPTAGLHFT LL RL +G+++ F+TLHVG GTF PVK D + H MH Sbjct: 170 TVYARRPGSVAAPTAGLHFTPELLERLREMGVELRFLTLHVGPGTFRPVK-GDPEKHEMH 228 Query: 242 SEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIFITPGY 301 +E I A+A+N K+ G R+V+VGTT +R LE+A E + G T +FI P Y Sbjct: 229 AEPYAIPEEVAEAVNRAKAEGRRVVAVGTTVVRALESAYREGVGVVAGEGETRLFIRPPY 288 Query: 302 RFRAVDILMSNFHLPKSTLLMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLL 356 F+ VD L +NFHLP+STLLMLV+AF G E T + Y+ A++ YRFYS GD L+ Sbjct: 289 TFKVVDALFTNFHLPRSTLLMLVAAFLGRERTLEAYRLAVAEGYRFYSLGDAMLI 343 |
>d1vkya_ e.53.1.1 (A:) Queuosine biosynthesis protein queA {Thermotoga maritima [TaxId: 2336]} Length = 332 | Back information, alignment and structure |
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Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | Probability |
Target | 360 | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | ||
d1wdia_ | 344 | Queuosine biosynthesis protein queA {Thermus thermophil | 100.0 | |
d1vkya_ | 332 | Queuosine biosynthesis protein queA {Thermotoga maritim | 100.0 |
>d1wdia_ e.53.1.1 (A:) Queuosine biosynthesis protein queA {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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class: Multi-domain proteins (alpha and beta) fold: QueA-like superfamily: QueA-like family: QueA-like domain: Queuosine biosynthesis protein queA species: Thermus thermophilus [TaxId: 274] Probab=100.00 E-value=0 Score=1021.26 Aligned_cols=340 Identities=44% Similarity=0.677 Sum_probs=318.5 Q ss_pred CCCCCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEEHHHHHHHCCCCCEEEEECCCEEEEEEEEEEECCCCC Q ss_conf 86335888897786169987812031356637888753153101434787269887999947956888998764046777 Q gi|254780180|r 2 MVKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIVFNNTKVITAQLNGVRFCHINR 81 (360) Q Consensus 2 ~lsdfDy~LP~elIAq~P~~~Rd~SRLLV~~r~~~~~~~i~h~~F~dl~~~L~~gDLLV~NnTKVipARL~g~k~~~~~~ 81 (360) -||||||+||++||||+|+++||+|||||++++++. +|+|+.|+||++||+||||||||||||+||||+|+| . T Consensus 2 ~LsdfDy~LP~elIAq~P~~~Rd~SRLLVl~r~~~~--~I~h~~F~dl~~~L~~gDlLV~NnTkVipARL~g~k-----~ 74 (344) T d1wdia_ 2 GLEAYDYHLPPEQIAQEGVEPRDMARLMVVYREGPF--RVAHKRVRDLPEFLRPGDVLVFNESKVIPARLLARK-----P 74 (344) T ss_dssp GGGGGCCCCCGGGBCSSCCSSGGGSEEEEECSSSSC--CEEEEEGGGHHHHCCTTCEEEEEEEEECCEEEEEEC-----T T ss_pred CHHHCCCCCCHHHHCCCCCCCCCCCEEEEEECCCCC--EEEECCHHHHHHHCCCCCEEEEECCEEEEEEEEEEE-----C T ss_conf 734549997959976899999621128999889998--576332623676479998999989989778999781-----6 Q ss_pred CCCEEEEEEECCCCCCCHHHHHHCCCCCCCCCEEEECCCCCC---CCEEEEEEECCCCCCEEEEECCCCCCHHHHHHHHH Q ss_conf 765058998112486610112211564369857997057887---40699996035577249997267863000254420 Q gi|254780180|r 82 REKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQDGQ---SRLEATVIDKWNTGEILLVFSISGIELERQISLVG 158 (360) Q Consensus 82 ~g~~ieill~~~~~~~~w~~l~kp~kklk~G~~l~~~~~~~~---~~l~~~vi~~~~~g~~~i~f~~~~~~~~~~L~~~G 158 (360) +|++||+++++..+++.|.|++||+||+++|+++.+.+.... ..+.++++.+.+.+.++++|+. ++.++|+++| T Consensus 75 tggkvEilll~~~~~~~w~al~kp~kk~k~G~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~~~~l~~~G 151 (344) T d1wdia_ 75 TGGKVEILLVRERSPGLWEALLGPARKAPPGTRLLLLSPKDLAPVPGLQAEVVAVEEDGVRLLRFQG---DLVAHLEEVG 151 (344) T ss_dssp TSCEEEEEECBCC------CCBCCCSCCCSCEEEEECTTTTSCEEEEEEEECCCSSCC-------------CCEEESCCC T ss_pred CCCEEEEEEECCCCCCEEEEEECCCCCCCCCCEEEECCCCCCCCCCCCEEEEEEECCCCCEEEEECC---CHHHHHHHHC T ss_conf 8974999983124897089995336778999889953764322236736999998068847997222---0677788755 Q ss_pred CCCCCHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCC Q ss_conf 35785222123456521143310134567574005556887899999999972155303787316566578874101356 Q gi|254780180|r 159 TIPLPPYIARKRPIDARDYVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDH 238 (360) Q Consensus 159 ~iPLPPYI~r~r~~~~~D~~~YQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h 238 (360) +|||||||+|+ .|.+|||||||+++|||||||||||||++||++|++|||++++||||||+|||+||++ ++.+| T Consensus 152 ~~PLPPYI~r~-----~d~~rYQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~vTLHVG~GTF~Pv~~-~~~~H 225 (344) T d1wdia_ 152 EVPLPPYIKAK-----IPMERYQTVYARRPGSVAAPTAGLHFTPELLERLREMGVELRFLTLHVGPGTFRPVKG-DPEKH 225 (344) T ss_dssp SCC------------------------------CCCCGGGGCCHHHHHHHHHTTCEEEEEEEEESGGGCCC--------- T ss_pred CCCCCHHHHCC-----HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEEEEECCCCCCCCCC-CCCCC T ss_conf 79988023112-----2676566564168987516645577899999999974061567999623443355334-32357 Q ss_pred CCCCHHEEECHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCEEEEEEEECCCCCHH Q ss_conf 67700077859999999987537980999628789989999852898468887223665740961143125527755457 Q gi|254780180|r 239 IMHSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIFITPGYRFRAVDILMSNFHLPKS 318 (360) Q Consensus 239 ~mH~E~~~i~~~~~~~I~~ak~~g~rIiAVGTT~~R~LEs~~~~~~~~~~~~g~T~lfI~Pg~~f~~vd~LiTNFH~P~S 318 (360) +||+|||+||++|+++||+||++|+|||||||||||||||++..+|.+++++|||||||+|||+|++||+||||||+||| T Consensus 226 ~mH~E~~~i~~~t~~~i~~ak~~g~rIiAVGTT~~RaLEs~~~~~~~~~~~~g~T~lfI~Pg~~f~~vd~LlTNFHlP~S 305 (344) T d1wdia_ 226 EMHAEPYAIPEEVAEAVNRAKAEGRRVVAVGTTVVRALESAYREGVGVVAGEGETRLFIRPPYTFKVVDALFTNFHLPRS 305 (344) T ss_dssp -CCCEEEEECHHHHHHHHHHHHTTCCEEEESHHHHHHHHHTEETTTEECCEEEEECCCCCSSCCCSSCSEEEEECCCTTC T ss_pred CCCCEEEEECHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCEECEEEECCCCCCC T ss_conf 88874999839999999999973995899957899999999970898577887568697899977481862446847802 Q ss_pred HHHHHHHHHHCHHHHHHHHHHHHHCCCEEECCCCHHHCC Q ss_conf 899999987198999999999998698261101022233 Q gi|254780180|r 319 TLLMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLLF 357 (360) Q Consensus 319 tll~Lv~Af~G~~~~~~~Y~~Ai~~~yrF~syGDamLi~ 357 (360) |||||||||+|+++|+++|++||+++||||||||||||+ T Consensus 306 tll~Lv~af~g~~~~~~~Y~~Ai~~~YrF~SyGDamlil 344 (344) T d1wdia_ 306 TLLMLVAAFLGRERTLEAYRLAVAEGYRFYSLGDAMLIL 344 (344) T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHTTCCBSTTSCEEEEC T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHCCCCEECCCHHHEEC T ss_conf 999999995795999999999998799333303321109 |
>d1vkya_ e.53.1.1 (A:) Queuosine biosynthesis protein queA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 360 | S-adenosylmethionine:tRNA ribosyltransferase-isome | ||
1wdi_A_ | 345 | (A:) Hypothetical protein TT0907; structural genom | 1e-111 | |
1yy3_A_1-67_171-346 | 243 | (A:1-67,A:171-346) S-adenosylmethionine:tRNA ribos | 4e-68 | |
1vky_A_1-76_174-347 | 250 | (A:1-76,A:174-347) S-adenosylmethionine:tRNA ribos | 3e-67 | |
1yy3_A_1-67_171-346 | 243 | (A:1-67,A:171-346) S-adenosylmethionine:tRNA ribos | 1e-18 | |
1vky_A_1-76_174-347 | 250 | (A:1-76,A:174-347) S-adenosylmethionine:tRNA ribos | 2e-18 | |
1yy3_A_68-170 | 103 | (A:68-170) S-adenosylmethionine:tRNA ribosyltransf | 4e-15 | |
1vky_A_77-173 | 97 | (A:77-173) S-adenosylmethionine:tRNA ribosyltransf | 4e-14 |
>1wdi_A (A:) Hypothetical protein TT0907; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; HET: CIT; 2.10A {Thermus thermophilus}Length = 345 | Back alignment and structure |
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Score = 396 bits (1019), Expect = e-111 Identities = 151/361 (41%), Positives = 202/361 (55%), Gaps = 20/361 (5%) Query: 1 MM-VKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAI 59 M ++ +D+ LPP +IA V PRD ARLMVV+ P ++ V DLP FL D + Sbjct: 1 MEGLEAYDYHLPPEQIAQEGVEPRDMARLMVVYRE--GPFRVAHKRVRDLPEFLRPGDVL 58 Query: 60 VFNNTKVITAQLNGVRFCHINRREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFS 119 VFN +KVI A+L + ++ L SP W P++ G L S Sbjct: 59 VFNESKVIPARLLARK-----PTGGKVEILLVRERSPGLWEALLGPARKAPPGTRLLLLS 113 Query: 120 QDGQS---RLEATVIDKWNTGEILLVFSISGIELERQISLVGTIPLPPYIARKRPIDARD 176 + L+A V+ G LL F + ++ G +PLPPYI K P++ Sbjct: 114 PKDLAPVPGLQAEVVAVEEDGVRLLRFQGDLVAHLEEV---GEVPLPPYIKAKIPME--- 167 Query: 177 YVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTD 236 YQT YA+ GSVAAPTAGLHFT LL RL +G+++ F+TLHVG GTF PVK D + Sbjct: 168 --RYQTVYARRPGSVAAPTAGLHFTPELLERLREMGVELRFLTLHVGPGTFRPVK-GDPE 224 Query: 237 DHIMHSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIF 296 H MH+E I A+A+N K+ G R+V+VGTT +R LE+A E + G T +F Sbjct: 225 KHEMHAEPYAIPEEVAEAVNRAKAEGRRVVAVGTTVVRALESAYREGVGVVAGEGETRLF 284 Query: 297 ITPGYRFRAVDILMSNFHLPKSTLLMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLL 356 I P Y F+ VD L +NFHLP+STLLMLV+AF G E T + Y+ A++ YRFYS GD L+ Sbjct: 285 IRPPYTFKVVDALFTNFHLPRSTLLMLVAAFLGRERTLEAYRLAVAEGYRFYSLGDAMLI 344 Query: 357 F 357 Sbjct: 345 L 345 |
>1yy3_A (A:1-67,A:171-346) S-adenosylmethionine:tRNA ribosyltransferase- isomerase; beta-barrel, QUEA, quein queuosine, tRNA- modification; 2.88A {Bacillus subtilis}Length = 243 | Back alignment and structure |
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>1vky_A (A:1-76,A:174-347) S-adenosylmethionine:tRNA ribosyltransferase- isomerase; TM0574, structural genomics, JCSG, protein structure initiative, PSI; 2.00A {Thermotoga maritima}Length = 250 | Back alignment and structure |
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>1yy3_A (A:1-67,A:171-346) S-adenosylmethionine:tRNA ribosyltransferase- isomerase; beta-barrel, QUEA, quein queuosine, tRNA- modification; 2.88A {Bacillus subtilis}Length = 243 | Back alignment and structure |
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>1vky_A (A:1-76,A:174-347) S-adenosylmethionine:tRNA ribosyltransferase- isomerase; TM0574, structural genomics, JCSG, protein structure initiative, PSI; 2.00A {Thermotoga maritima}Length = 250 | Back alignment and structure |
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>1yy3_A (A:68-170) S-adenosylmethionine:tRNA ribosyltransferase- isomerase; beta-barrel, QUEA, quein queuosine, tRNA- modification; 2.88A {Bacillus subtilis}Length = 103 | Back alignment and structure |
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>1vky_A (A:77-173) S-adenosylmethionine:tRNA ribosyltransferase- isomerase; TM0574, structural genomics, JCSG, protein structure initiative, PSI; 2.00A {Thermotoga maritima}Length = 97 | Back alignment and structure |
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Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 360 | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | ||
1wdi_A_ | 345 | Hypothetical protein TT0907; structural genomics, | 100.0 | |
1yy3_A_1-67_171-346 | 243 | S-adenosylmethionine:tRNA ribosyltransferase- isom | 100.0 | |
1vky_A_1-76_174-347 | 250 | S-adenosylmethionine:tRNA ribosyltransferase- isom | 100.0 | |
1yy3_A_68-170 | 103 | S-adenosylmethionine:tRNA ribosyltransferase- isom | 99.9 | |
1vky_A_77-173 | 97 | S-adenosylmethionine:tRNA ribosyltransferase- isom | 99.87 |
>1wdi_A (A:) Hypothetical protein TT0907; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; HET: CIT; 2.10A {Thermus thermophilus} | Back alignment and structure |
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Probab=100.00 E-value=0 Score=1017.51 Aligned_cols=341 Identities=44% Similarity=0.672 Sum_probs=319.9 Q ss_pred CCCCCCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEEHHHHHHHCCCCCEEEEECCCEEEEEEEEEEECCCC Q ss_conf 98633588889778616998781203135663788875315310143478726988799994795688899876404677 Q gi|254780180|r 1 MMVKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIVFNNTKVITAQLNGVRFCHIN 80 (360) Q Consensus 1 M~lsdfDy~LP~elIAq~P~~~Rd~SRLLV~~r~~~~~~~i~h~~F~dl~~~L~~gDLLV~NnTKVipARL~g~k~~~~~ 80 (360) |++|||||+||+|+|||+|+++||+|||||++|+++. .|+|+.|+||++||+||||||||||||+||||+|+| T Consensus 2 m~ls~fdf~LP~elIAq~P~~~Rd~sRLLVl~r~~g~--~i~h~~F~dl~~~L~~GDlLV~NdTkVipARL~g~k----- 74 (345) T 1wdi_A 2 EGLEAYDYHLPPEQIAQEGVEPRDMARLMVVYREGPF--RVAHKRVRDLPEFLRPGDVLVFNESKVIPARLLARK----- 74 (345) T ss_dssp CGGGGGCCCCCGGGBCSSCCSSGGGSEEEEECSSSSC--CEEEEEGGGHHHHCCTTCEEEEEEEEECCEEEEEEC----- T ss_pred CCHHHCCCCCCHHHHCCCCCCCCCCCEEEEEECCCCC--EEEECCHHHHHHHCCCCCEEEEECCEEEEEEEEEEE----- T ss_conf 9756769998959976899998611138999889998--576331623676479998999989989788999770----- Q ss_pred CCCCEEEEEEECCCCCCCHHHHHHCCCCCCCCCEEEECCCCCCC---CEEEEEEECCCCCCEEEEECCCCCCHHHHHHHH Q ss_conf 77650589981124866101122115643698579970578874---069999603557724999726786300025442 Q gi|254780180|r 81 RREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQDGQS---RLEATVIDKWNTGEILLVFSISGIELERQISLV 157 (360) Q Consensus 81 ~~g~~ieill~~~~~~~~w~~l~kp~kklk~G~~l~~~~~~~~~---~l~~~vi~~~~~g~~~i~f~~~~~~~~~~L~~~ 157 (360) .+|++||++++++++++.|.|++||+||+|+|+++.|.+..... .+.++++++.+.+.++..+. .++.++|+++ T Consensus 75 ~tg~~iEilll~~l~~~~w~~lv~p~kk~k~G~~l~~~~~~~~~~~~~l~a~v~~~~~~~~~~~~~~---~~~~~~l~~~ 151 (345) T 1wdi_A 75 PTGGKVEILLVRERSPGLWEALLGPARKAPPGTRLLLLSPKDLAPVPGLQAEVVAVEEDGVRLLRFQ---GDLVAHLEEV 151 (345) T ss_dssp TTSCEEEEEECBCC------CCBCCCSCCCSCEEEEECTTTTSCEEEEEEEECCCSSCC-------------CCEEESCC T ss_pred CCCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCEEEEEEEECCCCEEEEEC---CCHHHHHHHH T ss_conf 6897089998414576135421210567898988996377532212673799999706872798612---3168898875 Q ss_pred HCCCCCHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCC Q ss_conf 03578522212345652114331013456757400555688789999999997215530378731656657887410135 Q gi|254780180|r 158 GTIPLPPYIARKRPIDARDYVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDD 237 (360) Q Consensus 158 G~iPLPPYI~r~r~~~~~D~~~YQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~ 237 (360) |+|||||||+| +.|.+|||||||+++|||||||||||||++||++|++|||++++||||||+|||+||+ +++++ T Consensus 152 G~~PLPpYI~r-----~~d~e~YQTVyA~~~GsVAAPTAGLHFt~~ll~~l~~kGv~~a~iTLHVG~GTF~pv~-~di~~ 225 (345) T 1wdi_A 152 GEVPLPPYIKA-----KIPMERYQTVYARRPGSVAAPTAGLHFTPELLERLREMGVELRFLTLHVGPGTFRPVK-GDPEK 225 (345) T ss_dssp CSCC------------------------------CCCCGGGGCCHHHHHHHHHTTCEEEEEEEEESGGGCCC-------- T ss_pred CCCCCCCHHCC-----CCHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCCC-CCCCC T ss_conf 47998810202-----4225667778616898552566877778999999997415056799962244446533-52235 Q ss_pred CCCCCHHEEECHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCEEEEEEEECCCCCH Q ss_conf 66770007785999999998753798099962878998999985289846888722366574096114312552775545 Q gi|254780180|r 238 HIMHSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIFITPGYRFRAVDILMSNFHLPK 317 (360) Q Consensus 238 h~mH~E~~~i~~~~~~~I~~ak~~g~rIiAVGTT~~R~LEs~~~~~~~~~~~~g~T~lfI~Pg~~f~~vd~LiTNFH~P~ 317 (360) |+||+|||+||++|+++||+||++|||||||||||||||||+++.+|.+++++|||||||+|||+|++||+||||||+|| T Consensus 226 H~mh~E~~~i~~~ta~~i~~ak~~G~RviAVGTT~vRaLEsaa~~~g~l~~~~G~T~lfI~Pgy~fkvvD~LiTNFHlP~ 305 (345) T 1wdi_A 226 HEMHAEPYAIPEEVAEAVNRAKAEGRRVVAVGTTVVRALESAYREGVGVVAGEGETRLFIRPPYTFKVVDALFTNFHLPR 305 (345) T ss_dssp --CCCEEEEECHHHHHHHHHHHHTTCCEEEESHHHHHHHHHTEETTTEECCEEEEECCCCCSSCCCSSCSEEEEECCCTT T ss_pred CCCCCEEEEECHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHCCCCCCCCCCEECEEECCCCCCCCCCEEEECCCCCC T ss_conf 78776599982999999999997399489984689999999997289866778302459649997748187455684780 Q ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHCCCEEECCCCHHHCC Q ss_conf 7899999987198999999999998698261101022233 Q gi|254780180|r 318 STLLMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLLF 357 (360) Q Consensus 318 Stll~Lv~Af~G~~~~~~~Y~~Ai~~~yrF~syGDamLi~ 357 (360) ||||||||||+|+++|+++|++||+++||||||||||||+ T Consensus 306 STllmLvsAFaG~e~~~~aY~~Ai~~~YrF~SyGDamLIl 345 (345) T 1wdi_A 306 STLLMLVAAFLGRERTLEAYRLAVAEGYRFYSLGDAMLIL 345 (345) T ss_dssp CHHHHHHHHHHCHHHHHHHHHHHHHTTCCBSTTSCEEEEC T ss_pred CHHHHHHHHHCCHHHHHHHHHHHHHCCCCEECCCHHHEEC T ss_conf 2999999995896999999999998798433313320219 |
>1yy3_A (A:1-67,A:171-346) S-adenosylmethionine:tRNA ribosyltransferase- isomerase; beta-barrel, QUEA, quein queuosine, tRNA- modification; 2.88A {Bacillus subtilis} | Back alignment and structure |
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>1vky_A (A:1-76,A:174-347) S-adenosylmethionine:tRNA ribosyltransferase- isomerase; TM0574, structural genomics, JCSG, protein structure initiative, PSI; 2.00A {Thermotoga maritima} | Back alignment and structure |
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>1yy3_A (A:68-170) S-adenosylmethionine:tRNA ribosyltransferase- isomerase; beta-barrel, QUEA, quein queuosine, tRNA- modification; 2.88A {Bacillus subtilis} | Back alignment and structure |
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>1vky_A (A:77-173) S-adenosylmethionine:tRNA ribosyltransferase- isomerase; TM0574, structural genomics, JCSG, protein structure initiative, PSI; 2.00A {Thermotoga maritima} | Back alignment and structure |
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