254780180

 Score =  602 bits (1553), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 285/359 (79%), Positives = 321/359 (89%)

Query: 1   MMVKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIV 60
           MMVKEFDF LP SRIALRPV PRDSARLMVV+PNLSC  +ISD+ V DLP FLNSNDAIV
Sbjct: 1   MMVKEFDFHLPSSRIALRPVSPRDSARLMVVYPNLSCSQMISDYSVRDLPIFLNSNDAIV 60

Query: 61  FNNTKVITAQLNGVRFCHINRREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQ 120
           FNNTKVI AQL G R    N  E  ISCTLHMR+S NSWS Y RP K+I++GD ++FFSQ
Sbjct: 61  FNNTKVIAAQLRGRRLRRTNDSEHWISCTLHMRISSNSWSAYVRPGKIIRQGDTIYFFSQ 120

Query: 121 DGQSRLEATVIDKWNTGEILLVFSISGIELERQISLVGTIPLPPYIARKRPIDARDYVDY 180
           DGQS+LEA VI+K +TGEILLVF +SG EL+RQI+L+GT+PLPPYIA+KRPID RDYVDY
Sbjct: 121 DGQSKLEANVIEKRDTGEILLVFPLSGTELDRQIALIGTMPLPPYIAKKRPIDERDYVDY 180

Query: 181 QTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIM 240
           QTTYA IQGSVAAPTAGLHFTS+LLS+L+S+G+ VYF+TLHVGAGTFMPV+VEDTDDHIM
Sbjct: 181 QTTYASIQGSVAAPTAGLHFTSDLLSKLVSMGVAVYFITLHVGAGTFMPVRVEDTDDHIM 240

Query: 241 HSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIFITPG 300
           HSEIGFIDA TAQ LN+VK RGGRIV+VGTTSLRLLETATTEDGII P SG+TNIFITPG
Sbjct: 241 HSEIGFIDAQTAQDLNAVKLRGGRIVAVGTTSLRLLETATTEDGIIMPLSGYTNIFITPG 300

Query: 301 YRFRAVDILMSNFHLPKSTLLMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLLFQK 359
           YRFRAVD+L+SNFHLPKSTLLMLVSAFCG+EETK MYQHAI+++YRFYSYGD SL+F+K
Sbjct: 301 YRFRAVDVLLSNFHLPKSTLLMLVSAFCGVEETKTMYQHAIANSYRFYSYGDASLIFKK 359

Species: Candidatus Liberibacter solanacearum
Genus: Candidatus Liberibacter
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  445 bits (1144), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 224/363 (61%), Positives = 267/363 (73%), Gaps = 8/363 (2%)

Query: 1   MMVKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIV 60
           M V  FDFDLP + IALRP  PRDSARL+VV PN      + D +VSDL +FL   DA+V
Sbjct: 15  MRVDLFDFDLPEANIALRPANPRDSARLLVVDPNADH---MEDRIVSDLTSFLKPGDALV 71

Query: 61  FNNTKVITAQLNGVRFCHINRREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHF-FS 119
           FN+T+VI AQL GVR       E  +S TLHMR   + W  +ARP K IK+GD + F + 
Sbjct: 72  FNDTRVIPAQLEGVRLRE-GAPETAVSATLHMRADQSRWKAFARPGKRIKQGDRIRFGYE 130

Query: 120 QD---GQSRLEATVIDKWNTGEILLVFSISGIELERQISLVGTIPLPPYIARKRPIDARD 176
           +D   G + LEATV +K   GEI L+F +SG  L+  I+ VG IPLPPYIA KRP DA+D
Sbjct: 131 RDNACGLAHLEATVEEKGEEGEITLLFDVSGPVLDEAIASVGHIPLPPYIAAKRPEDAQD 190

Query: 177 YVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTD 236
             DYQT YA+ +G+VAAPTAGLHFT +L + L   GI+ +FVTLHVGAGTF+PVK +DTD
Sbjct: 191 QTDYQTIYAREKGAVAAPTAGLHFTPDLFAALDEAGIERHFVTLHVGAGTFLPVKADDTD 250

Query: 237 DHIMHSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIF 296
           DH MH EIG +   TA  LN+VK+RGGRIVSVGTTSLRL+E+AT E+G+I PWSG T IF
Sbjct: 251 DHKMHFEIGHVSQETAAKLNAVKARGGRIVSVGTTSLRLIESATDENGVIQPWSGATGIF 310

Query: 297 ITPGYRFRAVDILMSNFHLPKSTLLMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLL 356
           ITPGYRFRAVDILM+NFHLPKSTL MLVSAFCG+E  +  Y HAI   YRFYSYGD+SLL
Sbjct: 311 ITPGYRFRAVDILMTNFHLPKSTLFMLVSAFCGLETMRAAYAHAIETGYRFYSYGDSSLL 370

Query: 357 FQK 359
           F+K
Sbjct: 371 FRK 373

Species: Agrobacterium sp. H13-3
Genus: Agrobacterium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  442 bits (1136), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 221/359 (61%), Positives = 265/359 (73%), Gaps = 9/359 (2%)

Query: 1   MMVKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIV 60
           M V  FDFDLP   IALRP  PRD AR ++V P+ S  L++ D  V +LP+FL + DA+V
Sbjct: 1   MRVDLFDFDLPDENIALRPANPRDQARFLIVRPDGS--LMLEDRRVFELPSFLRAGDALV 58

Query: 61  FNNTKVITAQLNGVRFCHINRREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQ 120
           FN+TKVI AQL GVR      R   +SCTLHMRV+ N W  +ARP K IK+GD++ F   
Sbjct: 59  FNDTKVIPAQLEGVRIREGAER-TPVSCTLHMRVAANRWKAFARPGKRIKQGDVIDF--- 114

Query: 121 DGQSRLEATVIDKWNTGEILLVFSISGIELERQISLVGTIPLPPYIARKRPIDARDYVDY 180
           DG   L A V +K   GEI L F+ SG +L+R I+ VG IPLPPYIA KRP D++D  DY
Sbjct: 115 DG---LSANVAEKGEAGEIDLEFAASGPDLDRAIAGVGHIPLPPYIAAKRPEDSQDRTDY 171

Query: 181 QTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIM 240
           QT YA+ +G+VAAPTAGLHFT  L   L   GI+ +FVTLHVGAGTF+PVK +DTDDH M
Sbjct: 172 QTIYAREEGAVAAPTAGLHFTPALFEALDKAGIERHFVTLHVGAGTFLPVKADDTDDHKM 231

Query: 241 HSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIFITPG 300
           H EIG + A TA+ALN+VK+RGGRIVSVGTTSLRLLE+A +EDG + PWS  T IFITPG
Sbjct: 232 HQEIGHVSAETAEALNAVKARGGRIVSVGTTSLRLLESAASEDGRLLPWSDATGIFITPG 291

Query: 301 YRFRAVDILMSNFHLPKSTLLMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLLFQK 359
           YRF+AVD+LM+NFHLPKSTL MLVSAF G+E  +  Y HAI   YRFYSYGD+SLLF+K
Sbjct: 292 YRFKAVDVLMTNFHLPKSTLFMLVSAFAGLETMRAAYAHAIETGYRFYSYGDSSLLFRK 350

Species: Agrobacterium vitis
Genus: Agrobacterium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  441 bits (1134), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 219/366 (59%), Positives = 265/366 (72%), Gaps = 9/366 (2%)

Query: 1   MMVKEFDFDLPPSRIALRPVFPRDSARLMVVHPN---LSCPLVISDHLVSDLPAFLNSND 57
           M V  FDFDLP  RIALRP  PRDSARL+VV+P+   +     +SDH V DLP+FL + D
Sbjct: 1   MRVDLFDFDLPDERIALRPAEPRDSARLLVVNPHAESVHAESALSDHHVYDLPSFLRAGD 60

Query: 58  AIVFNNTKVITAQLNGVRFCHINRREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHF 117
           A+VFN+TKVI AQL G+R        +++S TLHMR+ PN W  +A+P K IK+GD +  
Sbjct: 61  ALVFNDTKVIPAQLEGIRH-RDGAGGQQVSATLHMRIGPNRWKAFAKPGKRIKEGDRI-A 118

Query: 118 FSQDGQS----RLEATVIDKWNTGEILLVFSISGIELERQISLVGTIPLPPYIARKRPID 173
           F   G+S     L+ATV +K   GE+ L F ++G  LE  I+ VG IPLPPYIA KRP D
Sbjct: 119 FGHSGESCFLGSLDATVEEKGEAGEVTLAFDLTGPALEEAIAAVGHIPLPPYIAAKRPED 178

Query: 174 ARDYVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVE 233
            RD  DYQT YA+ +G+VAAPTAGLHFT +L + L   GI+ +FVTLHVGAGTF+PVK +
Sbjct: 179 ERDRADYQTIYAREEGAVAAPTAGLHFTPDLFAALDKAGIERHFVTLHVGAGTFLPVKAD 238

Query: 234 DTDDHIMHSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGFT 293
           DTDDH MH E G++ A  A  LN+VK+RGGRIV VGTTSLRLLE+A  EDG I PW+G T
Sbjct: 239 DTDDHKMHLESGYVSAEIAARLNAVKARGGRIVCVGTTSLRLLESAAGEDGKIKPWAGAT 298

Query: 294 NIFITPGYRFRAVDILMSNFHLPKSTLLMLVSAFCGIEETKKMYQHAISHAYRFYSYGDT 353
            IFITPGYRF+AVD+LM+NFHLP+STL MLVSAF G E     Y+HAIS  YRFYSYGD 
Sbjct: 299 GIFITPGYRFKAVDMLMTNFHLPRSTLFMLVSAFSGFETMHAAYEHAISTGYRFYSYGDA 358

Query: 354 SLLFQK 359
           SLLF+K
Sbjct: 359 SLLFRK 364

Species: Rhizobium etli
Genus: Rhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 224/369 (60%), Positives = 266/369 (72%), Gaps = 14/369 (3%)

Query: 1   MMVKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIV 60
           M V  FDFDLP   IALRP  PRDSARL+VV PN +    + DH V DLP+FL   DA+V
Sbjct: 1   MRVDLFDFDLPEENIALRPANPRDSARLLVVDPNEN---RMEDHRVFDLPSFLRPGDALV 57

Query: 61  FNNTKVITAQLNGVRFCHINRREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHF-FS 119
           FN+T+VI AQL GVR       E  +S TLHMR   + W  +ARP K IK+GD + F + 
Sbjct: 58  FNDTRVIPAQLEGVRLRE-GAPETAVSATLHMRADQSRWKAFARPGKRIKEGDRIRFGYD 116

Query: 120 QD---------GQSRLEATVIDKWNTGEILLVFSISGIELERQISLVGTIPLPPYIARKR 170
           +D         G + LEATV +K   GEI L+F ISG  L+  I+ VG IPLPPYIA KR
Sbjct: 117 RDTVNSSSGACGLAHLEATVEEKGEEGEITLLFDISGPVLDEAIASVGHIPLPPYIAAKR 176

Query: 171 PIDARDYVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPV 230
           P D +D  DYQT YA+ +G+VAAPTAGLHFT +L   L S GI+ +FVTLHVGAGTF+PV
Sbjct: 177 PEDQQDQTDYQTIYAREKGAVAAPTAGLHFTPDLFEALDSAGIERHFVTLHVGAGTFLPV 236

Query: 231 KVEDTDDHIMHSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWS 290
           K +DTDDH MH EIG++   TA  LN+VK+RGGRIV VGTTSLRL+E+A TEDG I+PWS
Sbjct: 237 KSDDTDDHKMHFEIGYVSQETADRLNAVKARGGRIVCVGTTSLRLIESAATEDGTIHPWS 296

Query: 291 GFTNIFITPGYRFRAVDILMSNFHLPKSTLLMLVSAFCGIEETKKMYQHAISHAYRFYSY 350
             T IFITPGYRFRAVD+LM+NFHLPKSTL MLVSAFCG+E  +  Y+HAI   YRFYSY
Sbjct: 297 DATGIFITPGYRFRAVDMLMTNFHLPKSTLFMLVSAFCGLETMRDAYRHAIETGYRFYSY 356

Query: 351 GDTSLLFQK 359
           GD+SLLF+K
Sbjct: 357 GDSSLLFRK 365

Species: Agrobacterium tumefaciens
Genus: Agrobacterium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 221/367 (60%), Positives = 268/367 (73%), Gaps = 16/367 (4%)

Query: 1   MMVKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIV 60
           M V  FDFDLP + IALRP  PRDSAR++VV P     L  SD  V DLP+FL+  DA+V
Sbjct: 6   MRVDLFDFDLPETSIALRPASPRDSARMLVVRPQREPAL--SDFGVLDLPSFLSPGDALV 63

Query: 61  FNNTKVITAQLNGVRFCHINRREK----EISCTLHMRVSPNSWSVYARPSKVIKKGDILH 116
           FN+TKVI AQL G+R     RR +    ++S TLHMRV+P+ W  +ARP++ +K GD + 
Sbjct: 64  FNDTKVIPAQLEGIR-----RRGEDVATQVSLTLHMRVAPDRWKAFARPARRLKPGDRIS 118

Query: 117 FFSQDGQS----RLEATVIDKWNTGEILLVFSISGIELERQISLVGTIPLPPYIARKRPI 172
           F    G +     L+ATV +K   GE+ L F +SG  L+  I  VG IPLPPYIA KR  
Sbjct: 119 F-GHGGNACLLGSLDATVEEKGEAGEVTLRFELSGPVLDEAIMSVGHIPLPPYIASKRSE 177

Query: 173 DARDYVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKV 232
           DARD  DYQT YA+ +G+VAAPTAGLHFT  L  +L   GI+ +FVTLHVGAGTF+PVK 
Sbjct: 178 DARDRADYQTVYAREEGAVAAPTAGLHFTDRLFGKLDEAGIERHFVTLHVGAGTFLPVKA 237

Query: 233 EDTDDHIMHSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGF 292
           +DTDDH+MH EIG +DA TA+ LN+V++RGGRIV VGTTSLRL+E+A TEDG I+PWSG 
Sbjct: 238 DDTDDHVMHEEIGHVDAVTAEKLNAVRARGGRIVCVGTTSLRLIESAATEDGKIHPWSGT 297

Query: 293 TNIFITPGYRFRAVDILMSNFHLPKSTLLMLVSAFCGIEETKKMYQHAISHAYRFYSYGD 352
           T IFITPGYRFRAVD+LM+NFHLPKSTL MLVSAF G+E  +  Y HAI+  YRFYSYGD
Sbjct: 298 TGIFITPGYRFRAVDMLMTNFHLPKSTLFMLVSAFAGLETMRGAYTHAIAAGYRFYSYGD 357

Query: 353 TSLLFQK 359
            SLLF+K
Sbjct: 358 ASLLFRK 364

Species: Sinorhizobium fredii
Genus: Sinorhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  434 bits (1117), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 218/373 (58%), Positives = 267/373 (71%), Gaps = 16/373 (4%)

Query: 1   MMVKEFDFDLPPSRIALRPVFPRDSARLMVVHPNL-------SCP---LVISDHLVSDLP 50
           M V  FDFDLP  RIALRP  PRDSARL+VV+P+        S P     +SDH V DLP
Sbjct: 1   MRVDLFDFDLPDERIALRPAEPRDSARLLVVNPHAESGPHAESVPHAESALSDHHVYDLP 60

Query: 51  AFLNSNDAIVFNNTKVITAQLNGVRFCHINRREKEISCTLHMRVSPNSWSVYARPSKVIK 110
           +FL + DA+VFN+TKVI AQL G+R        +++S TLHMR+ P+ W  +A+P K IK
Sbjct: 61  SFLRAGDALVFNDTKVIPAQLEGIRH-RDGAGGQQVSATLHMRIGPSRWKAFAKPGKRIK 119

Query: 111 KGDILHFFSQDGQS----RLEATVIDKWNTGEILLVFSISGIELERQISLVGTIPLPPYI 166
           +GD +  F   G+S     L+ATV +K   GE+ L F ++G  L+  I+ VG IPLPPYI
Sbjct: 120 EGDRI-AFGHSGESCFLGALDATVEEKGEAGEVTLAFDLTGPALDEAIAAVGHIPLPPYI 178

Query: 167 ARKRPIDARDYVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGT 226
           A KRP D RD  DYQT YA+ +G+VAAPTAGLHFT +L + L   GI+ +FVTLHVGAGT
Sbjct: 179 AAKRPEDERDRADYQTIYAREEGAVAAPTAGLHFTPDLFAALDKAGIERHFVTLHVGAGT 238

Query: 227 FMPVKVEDTDDHIMHSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGII 286
           F+PVK +DTDDH MH E G++ A  A  LN+VK+RGGRIV VGTTSLRL+E+A  EDG I
Sbjct: 239 FLPVKADDTDDHKMHLESGYVSAEIAARLNAVKARGGRIVCVGTTSLRLIESAAGEDGKI 298

Query: 287 NPWSGFTNIFITPGYRFRAVDILMSNFHLPKSTLLMLVSAFCGIEETKKMYQHAISHAYR 346
            PW+G T IFITPGYRF+AVD+LM+NFHLP+STL MLVSAF G E  +  Y+HAIS  YR
Sbjct: 299 KPWAGATGIFITPGYRFKAVDMLMTNFHLPRSTLFMLVSAFSGFETMRAAYEHAISTGYR 358

Query: 347 FYSYGDTSLLFQK 359
           FYSYGD SLLF+K
Sbjct: 359 FYSYGDASLLFRK 371

Species: Rhizobium etli
Genus: Rhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 216/363 (59%), Positives = 259/363 (71%), Gaps = 8/363 (2%)

Query: 1   MMVKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIV 60
           M V  FDFDLP  RIALRP  PRDSARL+VV P+    L  SDH V DLP+FL + DA+V
Sbjct: 1   MRVDLFDFDLPDERIALRPAEPRDSARLLVVDPDAESAL--SDHHVCDLPSFLRAGDALV 58

Query: 61  FNNTKVITAQLNGVRFCHINRREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQ 120
           FN+TKVI AQL G+R        +++S TLHMR+ P+ W  +A+P K IK+GD + F   
Sbjct: 59  FNDTKVIPAQLEGIRH-RDGAGGQQVSATLHMRIGPSRWKAFAKPGKRIKEGDRIAF-GH 116

Query: 121 DGQS----RLEATVIDKWNTGEILLVFSISGIELERQISLVGTIPLPPYIARKRPIDARD 176
            G+S     L+ATV +K   GE+ L F +SG  L+  I+ VG IPLPPYIA KRP D RD
Sbjct: 117 SGESCMIGSLDATVEEKGEAGEVTLAFDLSGPVLDEAIAAVGHIPLPPYIAAKRPEDERD 176

Query: 177 YVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTD 236
             DYQT YA+ +G+VAAPTAGLHFT  L   L   GI+ +FVTLHVGAGTF+PVK +DTD
Sbjct: 177 RADYQTIYAREEGAVAAPTAGLHFTPALFEALDKAGIERHFVTLHVGAGTFLPVKADDTD 236

Query: 237 DHIMHSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIF 296
           DH MH E G++    A  LN+VK+RGGRIV VGTTSLRL+E+A  E G I PW+G T IF
Sbjct: 237 DHKMHLESGYVSGEIAAGLNAVKARGGRIVCVGTTSLRLIESAAGESGEIKPWAGATGIF 296

Query: 297 ITPGYRFRAVDILMSNFHLPKSTLLMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLL 356
           ITPGYRF+AVD+LM+NFHLP+STL MLVSAF G E     Y+HAIS  YRFYSYGD SLL
Sbjct: 297 ITPGYRFKAVDMLMTNFHLPRSTLFMLVSAFSGFETMHAAYKHAISTGYRFYSYGDASLL 356

Query: 357 FQK 359
           F+K
Sbjct: 357 FRK 359

Species: Rhizobium etli
Genus: Rhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  431 bits (1109), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 215/366 (58%), Positives = 263/366 (71%), Gaps = 14/366 (3%)

Query: 1   MMVKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIV 60
           M V  FDFDLP  RIALRP  PRDSARL+VV PN    +V+SD  + DL ++L   DAIV
Sbjct: 1   MRVDLFDFDLPDERIALRPAEPRDSARLLVVDPN--AEMVLSDRQIRDLSSYLRPGDAIV 58

Query: 61  FNNTKVITAQLNGVRFCHINRRE----KEISCTLHMRVSPNSWSVYARPSKVIKKGDILH 116
           FN+TKVI AQL G+R      RE    +++S TLHMR +P+ W  +A+P K IK GD + 
Sbjct: 59  FNDTKVIPAQLEGIR-----HREGAPGQQVSATLHMRAAPDRWKAFAKPGKRIKIGDRIQ 113

Query: 117 FFSQD---GQSRLEATVIDKWNTGEILLVFSISGIELERQISLVGTIPLPPYIARKRPID 173
           F   +       L+A V +K   GEI L F +SG  L+  I+ VG IPLPPYIA KRP D
Sbjct: 114 FGHGENVCALGALDAVVEEKGEGGEITLRFDLSGPALDEAIAAVGHIPLPPYIAAKRPED 173

Query: 174 ARDYVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVE 233
            RD  DYQT YA+ +G+VAAPTAGLHFT +L + L ++G++ +FVTLHVGAGTF+PVK +
Sbjct: 174 ERDRADYQTIYAREEGAVAAPTAGLHFTPSLFATLDAMGVERHFVTLHVGAGTFLPVKAD 233

Query: 234 DTDDHIMHSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGFT 293
           DT+DH MH EIG +DA TA+ LN+VK+RGGRIV VGTTSLRLLE+A  EDG I PWSG T
Sbjct: 234 DTEDHKMHFEIGHVDAATAEKLNAVKARGGRIVCVGTTSLRLLESAAAEDGTIKPWSGAT 293

Query: 294 NIFITPGYRFRAVDILMSNFHLPKSTLLMLVSAFCGIEETKKMYQHAISHAYRFYSYGDT 353
            IFITPGYRF+ VD+LM+NFHLP+STL MLVSAF G++  +  Y HAI   YRFYSYGD 
Sbjct: 294 GIFITPGYRFKTVDLLMTNFHLPRSTLFMLVSAFAGLDTMRAAYTHAIETGYRFYSYGDG 353

Query: 354 SLLFQK 359
           SLL +K
Sbjct: 354 SLLHRK 359

Species: Agrobacterium tumefaciens
Genus: Agrobacterium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 215/363 (59%), Positives = 257/363 (70%), Gaps = 8/363 (2%)

Query: 1   MMVKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIV 60
           M V  FDFDLP  RIALRP  PRDSARL+VV PN    L  SDH V DL +FL + DA+V
Sbjct: 1   MRVDLFDFDLPDERIALRPAEPRDSARLLVVDPNAESHL--SDHRVGDLTSFLRAGDALV 58

Query: 61  FNNTKVITAQLNGVRFCHINRREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQ 120
           FN+TKVI AQL G+R        +++S TLHMR  PN W  +A+P K IK+GD + F   
Sbjct: 59  FNDTKVIPAQLEGIRH-RDGAGGQQVSATLHMRTGPNRWKAFAKPGKRIKQGDRISF-GH 116

Query: 121 DGQS----RLEATVIDKWNTGEILLVFSISGIELERQISLVGTIPLPPYIARKRPIDARD 176
            G+S     L+A V +K   GE+ L+F +SG  L+  I+ VG IPLPPYIA KRP D RD
Sbjct: 117 SGESCFLGSLDAAVEEKGEAGEVTLLFDLSGPALDEAIAAVGHIPLPPYIAAKRPEDERD 176

Query: 177 YVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTD 236
             DYQT YA+ +G+VAAPTAGLHFT  L   L   GI+ +FVTLHVGAGTF+PVK +DTD
Sbjct: 177 RADYQTIYAREEGAVAAPTAGLHFTPALFEALDKAGIERHFVTLHVGAGTFLPVKADDTD 236

Query: 237 DHIMHSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIF 296
           DH MH E G++ A  A  LN+V+ RGGRIV VGTTSLRL+E+A  E G I PW+G T IF
Sbjct: 237 DHKMHLESGYVSAEIAARLNAVRERGGRIVCVGTTSLRLVESAAEEGGEIMPWAGATGIF 296

Query: 297 ITPGYRFRAVDILMSNFHLPKSTLLMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLL 356
           ITPGYRF+AVD+LM+NFHLP+STL MLV+AF G E     Y+HAIS  YRFYSYGD SLL
Sbjct: 297 ITPGYRFKAVDMLMTNFHLPRSTLFMLVAAFAGFETMHAAYKHAISTGYRFYSYGDASLL 356

Query: 357 FQK 359
           F+K
Sbjct: 357 FRK 359

Species: Rhizobium leguminosarum
Genus: Rhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  496 bits (1280), Expect = e-141
 Identities = 173/359 (48%), Positives = 230/359 (64%), Gaps = 19/359 (5%)

Query: 1   MMVKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIV 60
           M + +FDFDLP   IA  P+ PRD++RL+V+         I      DLP +LN  D +V
Sbjct: 1   MKLSDFDFDLPEELIAQYPLEPRDASRLLVLDRKTG---EIEHRHFRDLPDYLNPGDLLV 57

Query: 61  FNNTKVITAQLNGVRFCHINRREKE--ISCTLHMRVSPNSWSVYARPSKVIKKGDILHFF 118
           FN+T+VI A+L G       ++E    I   L  R+  + W    RP+K  K G  L+F 
Sbjct: 58  FNDTRVIPARLFG------RKKETGGKIEVLLLRRLDEDRWLALVRPAKRPKPGTKLYF- 110

Query: 119 SQDGQSRLEATVIDKWNTGEILLVFSISGIELERQISLVGTIPLPPYIARKRPIDARDYV 178
             DG   L+A V+++   G  +L F   GI LE  +  +G +PLPPYI  KRP +  D  
Sbjct: 111 -GDG---LKAEVLERLEDGGRILRFLYEGIFLEL-LEELGHMPLPPYI--KRPDEDADRE 163

Query: 179 DYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDH 238
            YQT YAK  G+VAAPTAGLHFT  LL +L + G+++ FVTLHVGAGTF PV+VED ++H
Sbjct: 164 RYQTVYAKEPGAVAAPTAGLHFTEELLEKLKAKGVEIAFVTLHVGAGTFRPVRVEDIEEH 223

Query: 239 IMHSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIFIT 298
            MHSE   +   TA A+N+ K+RGGR+++VGTTS+R LE+A    G + P+SG+T+IFI 
Sbjct: 224 KMHSEWYEVPQETADAINAAKARGGRVIAVGTTSVRTLESAARAGGELKPFSGWTDIFIY 283

Query: 299 PGYRFRAVDILMSNFHLPKSTLLMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLLF 357
           PGYRF+ VD L++NFHLPKSTLLMLVSAF G E     Y+HA++  YRF+SYGD  L+ 
Sbjct: 284 PGYRFKVVDALITNFHLPKSTLLMLVSAFAGRERILAAYKHAVAEKYRFFSYGDAMLIL 342

Length = 342

 Score =  331 bits (851), Expect = 2e-91
 Identities = 155/359 (43%), Positives = 208/359 (57%), Gaps = 22/359 (6%)

Query: 3   VKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIVFN 62
           V  FDF+LP S IA  P  PRDS+RL+V+         I+     D+  F N  D +V N
Sbjct: 2   VSSFDFELPESLIAQYPSEPRDSSRLLVLDKQ---TGKITHKTFVDVLDFFNEGDLLVLN 58

Query: 63  NTKVITAQLNGVRFCHINRREKEISCT----LHMRVSPNSWSVYARPSKVIKKGDILHFF 118
           NTKVI A+L G          KE        L   +  N W    +PSK  K G  + F 
Sbjct: 59  NTKVIPARLFG---------RKESGGKVEVLLLRMLDENRWLALIKPSKKPKIGAKVKFG 109

Query: 119 SQDGQSRLEATVIDKWNTGEILLVFSISGIELERQISLVGTIPLPPYIARKRPIDARDYV 178
              G+  +    +   N       F+   + L   +   G +PLPPYI  KRP +  D  
Sbjct: 110 EGYGEKIM--AEMLAHNGRLFEFEFNDPNV-LLDVLESYGHMPLPPYI--KRPDEKADEE 164

Query: 179 DYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDH 238
            YQT Y+K  G+VAAPTAGLHF+  LL +L + G++  F+TLHVGAGTF PV+ ++ +DH
Sbjct: 165 RYQTVYSKKPGAVAAPTAGLHFSEELLEKLKAKGVQYAFITLHVGAGTFRPVEADNIEDH 224

Query: 239 IMHSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLET-ATTEDGIINPWSGFTNIFI 297
           +MH+E   +   T +ALN  +  GGRI++VGTTS+R LE+ A   DG+I P+ G T+IFI
Sbjct: 225 VMHAEYYEVPQETVEALNKTRENGGRIIAVGTTSVRSLESAAQEADGLIEPFFGDTSIFI 284

Query: 298 TPGYRFRAVDILMSNFHLPKSTLLMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLL 356
            PGY+F+ VD L++NFHLPKS+L+MLVSA  G E T   Y+HA+   YRF+SYGD  L+
Sbjct: 285 YPGYQFKVVDGLITNFHLPKSSLIMLVSALAGRENTMNAYKHAVEEKYRFFSYGDAMLI 343

This model describes the enzyme for S-adenosylmethionine:tRNA ribosyltransferase-isomerase (QueA). QueA synthesizes Queuosine which is usually in the first position of the anticodon of tRNAs specific for asparagine, aspartate, histidine, and tyrosine. Length = 344

 Score =  287 bits (735), Expect = 4e-78
 Identities = 148/387 (38%), Positives = 224/387 (57%), Gaps = 50/387 (12%)

Query: 1   MMVKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIV 60
           M + +FDFDLP   IA  P   RD++ L++    ++ P+    + + D   +L   D +V
Sbjct: 1   MKLSDFDFDLPSELIAQYPSSERDNSDLLIA---VTPPIKTKFYNIID---YLKEGDLLV 54

Query: 61  FNNTKVITAQLNGVRFCHINRREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQ 120
           FNN+KVI A+LN           K I+  L+ ++S +SWS +A+P++ +  GD  +F + 
Sbjct: 55  FNNSKVIKAKLN---------LGKNITINLNQKLSDDSWSAFAKPARKLHVGDEFYFDNH 105

Query: 121 DGQSRLEATVIDKWNTGEILLVFSISGIELERQISLVGTIPLPPYIARKRPI-------- 172
                 +  + +K   GEI + F ++ I +   +   G +PLP YI R   +        
Sbjct: 106 ------KVIITEKLAMGEIKVKFELNNISVFEFLDKYGEMPLPVYIRRSHSLCHPVATTT 159

Query: 173 --------------------DARDYVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIG 212
                                  D   YQT Y++I+GSVAAPTAGLHFT ++L +L + G
Sbjct: 160 GSKTYLNNDWIPWSNHGMTNTKNDNDRYQTVYSQIEGSVAAPTAGLHFTKDILDKLKAKG 219

Query: 213 IKVYFVTLHVGAGTFMPVKVEDTDDHIMHSEIGFIDAPTAQALNSVKSRGGRIVSVGTTS 272
           I+  F+TLHVGAGTF+PVK E+  +H MH+E   I   TA+ +N  K  G RI++VGTT+
Sbjct: 220 IQTAFLTLHVGAGTFLPVKTENIHEHKMHTEYCSITPETAEIINKAKQEGRRIIAVGTTT 279

Query: 273 LRLLETATTEDGIINPWSGFTNIFITPGYRFRAVDILMSNFHLPKSTLLMLVSAFCGIEE 332
           LR LE++   +GI+   S  T+IFITPG++F+  D+L++NFH PKSTL ML+ AF G +E
Sbjct: 280 LRTLESSCN-NGIVKAGSFETDIFITPGFKFQTADMLLTNFHFPKSTLFMLICAFAGFKE 338

Query: 333 TKKMYQHAISHAYRFYSYGDTSLLFQK 359
             ++Y++AI    RF+SYGD +LL++K
Sbjct: 339 MHELYKYAIKEKMRFFSYGDATLLYRK 365

Length = 366

 Score =  422 bits (1087), Expect = e-119
 Identities = 175/360 (48%), Positives = 227/360 (63%), Gaps = 16/360 (4%)

Query: 1   MMVKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIV 60
           M + +FDFDLP   IA  P  PRDS+RL+V+         I      DL  +LN  D +V
Sbjct: 1   MRLSDFDFDLPEELIAQYPAEPRDSSRLLVLDRKTG---EIEHRTFYDLIDYLNPGDLLV 57

Query: 61  FNNTKVITAQLNGVRFCHINRREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQ 120
           FN+T+VI A+L    F   +    ++   L  R+  N W    +PSK +K GD ++F   
Sbjct: 58  FNDTRVIPARL----FGRKHESGGKVEVLLERRLDDNRWLALIKPSKRLKAGDEIYF--- 110

Query: 121 DGQSRLEATVIDKWNTGEILLVFSISGIE-LERQISLVGTIPLPPYIARKRPIDARDYVD 179
                L+ATV+++   G  LL F   GI  L   +   G +PLPPYI  KR +D  D   
Sbjct: 111 --GDGLKATVLERLEHGLRLLEFDYEGIFSLLELLEKYGEMPLPPYI--KRKLDELDRDR 166

Query: 180 YQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHI 239
           YQT YAK  GSVAAPTAGLHFT  LL +L + G+++ FVTLHVGAGTF PVKVE+ ++H 
Sbjct: 167 YQTVYAKEPGSVAAPTAGLHFTEELLEKLKAKGVEIAFVTLHVGAGTFRPVKVENIEEHK 226

Query: 240 MHSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIFITP 299
           MHSE   +   TA A+N+ K+RGGRI++VGTTS+R LE+A  E G +  +SG+T+IFI P
Sbjct: 227 MHSEYYEVPQETADAINAAKARGGRIIAVGTTSVRTLESAAREAG-LKAFSGWTDIFIYP 285

Query: 300 GYRFRAVDILMSNFHLPKSTLLMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLLFQK 359
           GYRF+ VD L++NFHLPKSTLLMLVSAF G EE    Y+HAI   YRF+SYGD  L+ + 
Sbjct: 286 GYRFKVVDALITNFHLPKSTLLMLVSAFAGREELLAAYKHAIEQKYRFFSYGDAMLILRN 345

Length = 348

 Score =  257 bits (658), Expect = 5e-69
 Identities = 100/233 (42%), Positives = 131/233 (56%), Gaps = 16/233 (6%)

Query: 1   MMVKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIV 60
           M + +FD++LP   IA  P  PRDS+RL+V+         I     SDLP +L   D +V
Sbjct: 1   MKLSDFDYELPEELIAQYPAEPRDSSRLLVLDRETG---EIEHRRFSDLPDYLRPGDLLV 57

Query: 61  FNNTKVITAQLNGVRFCHINRREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQ 120
           FN+T+VI A+L G +         ++   L   +    W    +PSK +K GD L F   
Sbjct: 58  FNDTRVIPARLFGRKET-----GGKVEVLLLRPLDDGRWLALVKPSKKLKPGDTLEF--- 109

Query: 121 DGQSRLEATVIDKWNTGEILLVFSISGIE-LERQISLVGTIPLPPYIARKRPIDARDYVD 179
                L+A V+++   G  L+ F   G E L   +   G IPLPPYI  KRP +  D   
Sbjct: 110 --GDGLKAEVLERLEEGGRLVRFQFEGGEDLLELLERYGHIPLPPYI--KRPDEEEDRER 165

Query: 180 YQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKV 232
           YQT YAK  GSVAAPTAGLHFT  LL RL + G+++ FVTLHVGAGTF+PV+V
Sbjct: 166 YQTVYAKKPGSVAAPTAGLHFTPELLERLKAKGVEIAFVTLHVGAGTFLPVRV 218

Queuosine (Q) biosynthesis protein, or S-adenosylmethionine:tRNA -ribosyltransferase-isomerase, is required for the synthesis of the queuosine precursor (oQ). Q is a hypermodified nucleoside usually found at the first position of the anticodon of asparagine, aspartate, histidine, and tyrosine tRNAs. Length = 218

Probab=100.00  E-value=0  Score=1065.66  Aligned_cols=345  Identities=48%  Similarity=0.788  Sum_probs=333.8

Q ss_pred             CCCCCCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEEHHHHHHHCCCCCEEEEECCCEEEEEEEEEEECCCC
Q ss_conf             98633588889778616998781203135663788875315310143478726988799994795688899876404677
Q gi|254780180|r    1 MMVKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIVFNNTKVITAQLNGVRFCHIN   80 (360)
Q Consensus         1 M~lsdfDy~LP~elIAq~P~~~Rd~SRLLV~~r~~~~~~~i~h~~F~dl~~~L~~gDLLV~NnTKVipARL~g~k~~~~~   80 (360)
T Consensus         1 M~lsdfdy~LP~elIAq~P~~~Rd~sRLLV~~~~~~---~i~h~~F~dl~~~L~~gDlLV~NnTkVipARL~g~k-----   72 (345)
T PRK00147          1 MKLSDFDFDLPEELIAQYPLEPRDASRLLVLDRRTG---EIEHRHFRDLLDYLRPGDLLVFNDTRVIPARLFGRK-----   72 (345)
T ss_pred             CCHHHCCCCCCHHHHCCCCCCCCCCCEEEEEECCCC---CEEEEEHHHHHHHCCCCCEEEEECCEEEEEEEEEEE-----
T ss_conf             963342989995997579999866464889988999---477645644585479998999978989998999992-----


Q ss_pred             CCCCEEEEEEECCCCCCCHHHHHHCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             77650589981124866101122115643698579970578874069999603557724999726786300025442035
Q gi|254780180|r   81 RREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQDGQSRLEATVIDKWNTGEILLVFSISGIELERQISLVGTI  160 (360)
Q Consensus        81 ~~g~~ieill~~~~~~~~w~~l~kp~kklk~G~~l~~~~~~~~~~l~~~vi~~~~~g~~~i~f~~~~~~~~~~L~~~G~i  160 (360)
T Consensus        73 ~tgg~vEilll~~~~~~~w~~lvk~~kk~k~G~~l~~~~-----~~~~~v~~~~~~g~~~l~f~~~~~~~~~~l~~~G~~  147 (345)
T PRK00147         73 ETGGKIEVLLLRPLGEDRWLALVRPAKRPKPGTKLLFGD-----GLKAEVLERLEDGGRILRFSYDGEIFLELLEELGHM  147 (345)
T ss_pred             CCCCEEEEEEEEECCCCEEEEEEECCCCCCCCCEEEECC-----CEEEEEEEECCCCEEEEEECCCCHHHHHHHHHCCCC
T ss_conf             689879999987748987999995488899999998179-----848999996389769999758842799999975998


Q ss_pred             CCCHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             78522212345652114331013456757400555688789999999997215530378731656657887410135667
Q gi|254780180|r  161 PLPPYIARKRPIDARDYVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIM  240 (360)
Q Consensus       161 PLPPYI~r~r~~~~~D~~~YQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~m  240 (360)
T Consensus       148 PLPPYI--kr~~~~~D~~rYQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~vTLHVG~GTF~Pv~~e~i~~H~m  225 (345)
T PRK00147        148 PLPPYI--KRPDEDADRERYQTVYAKEPGAVAAPTAGLHFTEELLEKLKAKGVEIAFVTLHVGAGTFRPVRVEDIEEHKM  225 (345)
T ss_pred             CCCCCC--CCCCCHHHHHHHHHHHCCCCCCEECCCCCCCCCHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCC
T ss_conf             998302--577653468876465427998343475778789999999997797289999985566575555455455777


Q ss_pred             CCHHEEECHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCEEEEEEEECCCCCHHHH
Q ss_conf             70007785999999998753798099962878998999985289846888722366574096114312552775545789
Q gi|254780180|r  241 HSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIFITPGYRFRAVDILMSNFHLPKSTL  320 (360)
Q Consensus       241 H~E~~~i~~~~~~~I~~ak~~g~rIiAVGTT~~R~LEs~~~~~~~~~~~~g~T~lfI~Pg~~f~~vd~LiTNFH~P~Stl  320 (360)
T Consensus       226 H~E~~~I~~~t~~~I~~ak~~g~rIiAVGTT~~RaLEsa~~~~g~~~~~~g~TdlfI~Pgy~f~~vd~LiTNFHlPkStL  305 (345)
T PRK00147        226 HSEWYEVSQETADAINATKARGGRVIAVGTTSVRTLESAARADGELKPFSGETDIFIYPGYRFKVVDALITNFHLPKSTL  305 (345)
T ss_pred             CCEEEEECHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCEECEEEECCCCCCCHH
T ss_conf             66589989999999998886498699992528999999997379704677844879789997618187422573783489


Q ss_pred             HHHHHHHHCHHHHHHHHHHHHHCCCEEECCCCHHHCCCCC
Q ss_conf             9999987198999999999998698261101022233679
Q gi|254780180|r  321 LMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLLFQKR  360 (360)
Q Consensus       321 l~Lv~Af~G~~~~~~~Y~~Ai~~~yrF~syGDamLi~~~~  360 (360)
T Consensus       306 lmLVsAf~G~~~~~~aY~~Ai~~~YrF~SyGDamLi~~~~  345 (345)
T PRK00147        306 LMLVSAFAGRERILAAYKHAIEEKYRFFSYGDAMLILRNA  345 (345)
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHCCCCEECCCCHHEECCCC
T ss_conf             9999996797999999999998598345324230043689

Probab=100.00  E-value=0  Score=1038.03  Aligned_cols=344  Identities=51%  Similarity=0.815  Sum_probs=330.9

Q ss_pred             CCCCCCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEEHHHHHHHCCCCCEEEEECCCEEEEEEEEEEECCCC
Q ss_conf             98633588889778616998781203135663788875315310143478726988799994795688899876404677
Q gi|254780180|r    1 MMVKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIVFNNTKVITAQLNGVRFCHIN   80 (360)
Q Consensus         1 M~lsdfDy~LP~elIAq~P~~~Rd~SRLLV~~r~~~~~~~i~h~~F~dl~~~L~~gDLLV~NnTKVipARL~g~k~~~~~   80 (360)
T Consensus         1 m~~~~fdf~LPeelIAq~P~~~R~~sRLLvl~~~~~---~~~h~~F~dl~dyl~~GD~LVfNdTrVIpARl~G~k~----   73 (348)
T COG0809           1 MRLSDFDFDLPEELIAQYPAEPRDSSRLLVLDRKTG---EIEHRTFYDLIDYLNPGDLLVFNDTRVIPARLFGRKH----   73 (348)
T ss_pred             CCCCCCCCCCCHHHHHCCCCCCCCCCEEEEEECCCC---CEECCCHHHHHHHCCCCCEEEEECCEEECHHEEECCC----
T ss_conf             956557888997897169998676533899847888---3332545456753487878998368076032050027----


Q ss_pred             CCCCEEEEEEECCCCCCCHHHHHHCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCEEEEECCCCC-CHHHHHHHHHC
Q ss_conf             77650589981124866101122115643698579970578874069999603557724999726786-30002544203
Q gi|254780180|r   81 RREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQDGQSRLEATVIDKWNTGEILLVFSISGI-ELERQISLVGT  159 (360)
Q Consensus        81 ~~g~~ieill~~~~~~~~w~~l~kp~kklk~G~~l~~~~~~~~~~l~~~vi~~~~~g~~~i~f~~~~~-~~~~~L~~~G~  159 (360)
T Consensus        74 ~~g~~vEvll~~~~~~~~w~al~~~~kr~k~G~~i~f~~~-----l~a~v~e~~~~g~~~l~F~~~~~~~l~e~L~~~G~  148 (348)
T COG0809          74 ESGGKVEVLLERRLDDNRWLALIKPSKRLKAGDEIYFGDG-----LKATVLERLEHGLRLLEFDYEGIFSLLELLEKYGE  148 (348)
T ss_pred             CCCCEEEEEEEEECCCCCEEEEECCCCCCCCCCEEEECCC-----CEEEEEEECCCCEEEEEEECCCCHHHHHHHHHCCC
T ss_conf             8896599998726178827999432567888998994798-----26999996288529999945785059999997599


Q ss_pred             CCCCHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf             57852221234565211433101345675740055568878999999999721553037873165665788741013566
Q gi|254780180|r  160 IPLPPYIARKRPIDARDYVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHI  239 (360)
Q Consensus       160 iPLPPYI~r~r~~~~~D~~~YQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~  239 (360)
T Consensus       149 ~PLPPYI~--~~~~~~d~~~YQTVYak~~GsvAAPTAGLHFt~~LL~kLk~kGv~~afvTLHVGaGTF~pV~~~~i~eH~  226 (348)
T COG0809         149 MPLPPYIK--RKLDELDRDRYQTVYAKEPGSVAAPTAGLHFTEELLEKLKAKGVEIAFVTLHVGAGTFRPVKVENIEEHK  226 (348)
T ss_pred             CCCCCCCC--CCCCCCCHHHCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEEEECCCCCCCCEECCCCCCC
T ss_conf             89981338--7622124443246642588720047687778999999999779539999999646554341204433444


Q ss_pred             CCCHHEEECHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCEEEEEEEECCCCCHHH
Q ss_conf             77000778599999999875379809996287899899998528984688872236657409611431255277554578
Q gi|254780180|r  240 MHSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIFITPGYRFRAVDILMSNFHLPKST  319 (360)
Q Consensus       240 mH~E~~~i~~~~~~~I~~ak~~g~rIiAVGTT~~R~LEs~~~~~~~~~~~~g~T~lfI~Pg~~f~~vd~LiTNFH~P~St  319 (360)
T Consensus       227 MH~E~~~v~~eta~~i~~~k~~GgRIiaVGTTs~R~LEsa~~~~~-~~~~sg~T~IFI~PGy~~~~vD~LiTNFHlPkST  305 (348)
T COG0809         227 MHSEYYEVPQETADAINAAKARGGRIIAVGTTSVRTLESAAREAG-LKAFSGWTDIFIYPGYRFKVVDALITNFHLPKST  305 (348)
T ss_pred             CCHHHEECCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCC-CCCCCCCCCEEECCCCCCEECCEEHCCCCCCCCH
T ss_conf             305523259999999999997398499981615777887751377-6767676217862798526701100047687238


Q ss_pred             HHHHHHHHHCHHHHHHHHHHHHHCCCEEECCCCHHHCCCC
Q ss_conf             9999998719899999999999869826110102223367
Q gi|254780180|r  320 LLMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLLFQK  359 (360)
Q Consensus       320 ll~Lv~Af~G~~~~~~~Y~~Ai~~~yrF~syGDamLi~~~  359 (360)
T Consensus       306 LlMLVsAFaG~~~~~~aY~~Ai~~~YRFfSyGDamlI~~~  345 (348)
T COG0809         306 LLMLVSAFAGREELLAAYKHAIEQKYRFFSYGDAMLILRN  345 (348)
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHCCEEEECCCEEEEEEC
T ss_conf             9999998628799999999999846545312677998636

Probab=100.00  E-value=0  Score=1046.43  Aligned_cols=350  Identities=45%  Similarity=0.724  Sum_probs=320.9

Q ss_pred             CCCCCCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEEHHHHHHHCCCCCEEEEECCCEEEEEEEEEEECCCC
Q ss_conf             98633588889778616998781203135663788875315310143478726988799994795688899876404677
Q gi|254780180|r    1 MMVKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIVFNNTKVITAQLNGVRFCHIN   80 (360)
Q Consensus         1 M~lsdfDy~LP~elIAq~P~~~Rd~SRLLV~~r~~~~~~~i~h~~F~dl~~~L~~gDLLV~NnTKVipARL~g~k~~~~~   80 (360)
T Consensus         2 m~~~~fdf~LP~~LIA~yP~~~R~~sRLlvld~~~~---~i~H~~F~~~~~~~~~gdLlvlNnTkV~pARlfG~K~~~l-   77 (364)
T TIGR00113         2 MKVSSFDFELPEELIAQYPVEPRDSSRLLVLDKQTG---KITHKTFEDVLDFFNEGDLLVLNNTKVIPARLFGRKESFL-   77 (364)
T ss_pred             CCCCCCCCCCCHHHHHCCCCCCCCCCCEEEECCCCC---EECCCCHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCC-
T ss_conf             733444733666887328798542401135518873---1604504776741388866884376511100012511018-


Q ss_pred             CCCCEEEEEEECCCCCCCHHHHHHCCCCCCCCCEEEECCC-CCCCC-EEEEEEE-CCCCCC-EEEEECCCCC-----CHH
Q ss_conf             7765058998112486610112211564369857997057-88740-6999960-355772-4999726786-----300
Q gi|254780180|r   81 RREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQ-DGQSR-LEATVID-KWNTGE-ILLVFSISGI-----ELE  151 (360)
Q Consensus        81 ~~g~~ieill~~~~~~~~w~~l~kp~kklk~G~~l~~~~~-~~~~~-l~~~vi~-~~~~g~-~~i~f~~~~~-----~~~  151 (360)
T Consensus        78 -Pg~~vE~L~~~~~~~~~~~a~~k~sK~~K~G~~~~f~~~~~ge~~dl~~~i~~~~~~~~Gq~~~e~~~~~~~~nqe~~~  156 (364)
T TIGR00113        78 -PGGKVEVLLLRRLDENRFLALIKPSKKLKVGAKVKFGEDYDGEKPDLLKAIVAELLAHNGQRLLEFEFNDGPLNQEVLL  156 (364)
T ss_pred             -CCCEEEEEEEECCCCCEEEEEECCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHH
T ss_conf             -8740799852003685578776146760366246668765667768999999999713991799998789851257899


Q ss_pred             HHHHHHHCCCCCHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCC
Q ss_conf             02544203578522212345652114331013456757400555688789999999997215530378731656657887
Q gi|254780180|r  152 RQISLVGTIPLPPYIARKRPIDARDYVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVK  231 (360)
Q Consensus       152 ~~L~~~G~iPLPPYI~r~r~~~~~D~~~YQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~  231 (360)
T Consensus       157 d~L~~~G~mPLPPYI--kR~d~~~D~~~YQTvYsk~~GavAAPTAGLHF~e~ll~kL~~kgv~~~F~TLHVGaGTF~pV~  234 (364)
T TIGR00113       157 DVLESYGHMPLPPYI--KRPDEKADEERYQTVYSKKVGAVAAPTAGLHFSEELLEKLKAKGVEIAFVTLHVGAGTFRPVE  234 (364)
T ss_pred             HHHHHCCCCCCCCCC--CCCHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEEEECCCCCCEE
T ss_conf             887615823864888--887344000037734543542000342444579889999995798676876453054475024


Q ss_pred             CCCCCCCCCCCHHEEECHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHCC-C---CCCCCCCCCCEEECCCCCCEEEE
Q ss_conf             4101356677000778599999999875379809996287899899998528-9---84688872236657409611431
Q gi|254780180|r  232 VEDTDDHIMHSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTED-G---IINPWSGFTNIFITPGYRFRAVD  307 (360)
Q Consensus       232 ~~~i~~h~mH~E~~~i~~~~~~~I~~ak~~g~rIiAVGTT~~R~LEs~~~~~-~---~~~~~~g~T~lfI~Pg~~f~~vd  307 (360)
T Consensus       235 ~~~i~dH~mH~E~~~vp~~~~~~~~k~~~~G~Ri~aVGTTsvRslE~~a~~~~~~~~~~~~~~~~T~iFiYPG~~~~~Vd  314 (364)
T TIGR00113       235 VENIEDHVMHAEYLEVPQETVEALEKTRESGGRIIAVGTTSVRSLESAAQEADEPRDLLEPFFGDTDIFIYPGYQFKVVD  314 (364)
T ss_pred             ECCCCCCCCCCHHEECCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCCCHHHHHCCCCCEEECCCCEEEEEE
T ss_conf             40210364200001268789999999997098399987614777988876304771002011167436760674045340


Q ss_pred             EEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHCCCEEECCCCHHHCC
Q ss_conf             25527755457899999987198999999999998698261101022233
Q gi|254780180|r  308 ILMSNFHLPKSTLLMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLLF  357 (360)
Q Consensus       308 ~LiTNFH~P~Stll~Lv~Af~G~~~~~~~Y~~Ai~~~yrF~syGDamLi~  357 (360)
T Consensus       315 ~LiTNFHLPkSsLiMLVSAl~G~~~~~~~Y~~Av~~~YRFfSyGDAMlI~  364 (364)
T TIGR00113       315 GLITNFHLPKSSLIMLVSALAGRENTMNAYKTAVEEKYRFFSYGDAMLIL  364 (364)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCEEECC
T ss_conf             00206627026799999998737999999999984488512215301029

The hypermodified nucleoside is found in bacteria and eukaryotes . Queuosine is synthesized de novo exclusively in bacteria; for eukaryotes the compound is a nutrient factor. Queuosine biosynthesis protein, or S-adenosylmethionine:tRNA -ribosyltransferase-isomerase, is required for the synthesis of the queuosine precursor (oQ). ; GO: 0003824 catalytic activity, 0008616 queuosine biosynthetic process.

Probab=100.00  E-value=0  Score=1025.22  Aligned_cols=337  Identities=44%  Similarity=0.750  Sum_probs=318.1

Q ss_pred             CCCCCCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEEHHHHHHHCCCCCEEEEECCCEEEEEEEEEEECCCC
Q ss_conf             98633588889778616998781203135663788875315310143478726988799994795688899876404677
Q gi|254780180|r    1 MMVKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIVFNNTKVITAQLNGVRFCHIN   80 (360)
Q Consensus         1 M~lsdfDy~LP~elIAq~P~~~Rd~SRLLV~~r~~~~~~~i~h~~F~dl~~~L~~gDLLV~NnTKVipARL~g~k~~~~~   80 (360)
T Consensus         1 M~lsdfdy~LP~elIAq~P~~~Rd~SRLLV~~~~~-----~-~~~F~dl~~~L~~gDlLV~NnTkVipARL~~-------   67 (366)
T PRK01424          1 MKLSDFDFDLPSELIAQYPSSERDNSDLLIAVTPP-----I-KTKFYNIIDYLKEGDLLVFNNSKVIKAKLNL-------   67 (366)
T ss_pred             CCHHHCCCCCCHHHHCCCCCCCCCCCEEEECCCCC-----C-EEEEECHHHHCCCCCEEEEECCEEEEEEEEC-------
T ss_conf             95213388989599767998997514221517986-----4-0566030642899999999899987568854-------


Q ss_pred             CCCCEEEEEEECCCCCCCHHHHHHCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             77650589981124866101122115643698579970578874069999603557724999726786300025442035
Q gi|254780180|r   81 RREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQDGQSRLEATVIDKWNTGEILLVFSISGIELERQISLVGTI  160 (360)
Q Consensus        81 ~~g~~ieill~~~~~~~~w~~l~kp~kklk~G~~l~~~~~~~~~~l~~~vi~~~~~g~~~i~f~~~~~~~~~~L~~~G~i  160 (360)
T Consensus        68 --gk~vei~l~~~l~~~~w~~l~kp~kk~~~G~~l~~~~------~~~~v~~~~~~g~~~~~f~~~~~~~~~~l~~~G~~  139 (366)
T PRK01424         68 --GKNITINLNQKLSDNSWSAFAKPARKLNVGDEFYFDN------HKVIITEKLAMGEIKVKFELDNISVFEFLDKYGEM  139 (366)
T ss_pred             --CCCEEEEEEEECCCCEEEEEEECCCCCCCCCEEEECC------CEEEEEEECCCCEEEEEEECCCCCHHHHHHHCCCC
T ss_conf             --8823899876416874899995267874699898679------74899995069629999957998699999865999


Q ss_pred             CCCHHHCCCCC----------------------------CCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf             78522212345----------------------------65211433101345675740055568878999999999721
Q gi|254780180|r  161 PLPPYIARKRP----------------------------IDARDYVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIG  212 (360)
Q Consensus       161 PLPPYI~r~r~----------------------------~~~~D~~~YQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kG  212 (360)
T Consensus       140 PLPPYI~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~rYQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kG  219 (366)
T PRK01424        140 PLPVYIRRSHSLCHPVATLTGSKTNNNNDWIPWSNDGMTDQKNDNDRYQTIYSQIEGSVAAPTAGLHFTKDILDKLKAKG  219 (366)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEECCCCCCCCCHHHHHHHHHCC
T ss_conf             99875205554553323333332333223444333456752014666412432888840167676888999999999869


Q ss_pred             CCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHEEECHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             55303787316566578874101356677000778599999999875379809996287899899998528984688872
Q gi|254780180|r  213 IKVYFVTLHVGAGTFMPVKVEDTDDHIMHSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGF  292 (360)
Q Consensus       213 i~~~~iTLHVG~GTF~Pi~~~~i~~h~mH~E~~~i~~~~~~~I~~ak~~g~rIiAVGTT~~R~LEs~~~~~~~~~~~~g~  292 (360)
T Consensus       220 v~ia~vTLHVG~GTF~PV~~e~i~~H~mH~E~~~I~~~t~~~In~ak~~g~RViAVGTT~vRaLEs~~~-~g~~~~~~g~  298 (366)
T PRK01424        220 IQTAFVTLHVGAGTFLPVKTENIHEHKMHTEYCSITPETAEIINKAKQEGRRIIAVGTTTLRTLESSCN-NGIVKAGSFE  298 (366)
T ss_pred             CCEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHH-CCCCCCCCCC
T ss_conf             927999998657764788877633588746689979999999999987189289994516887887751-6985778883


Q ss_pred             CCEEECCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHCCCEEECCCCHHHCCCC
Q ss_conf             2366574096114312552775545789999998719899999999999869826110102223367
Q gi|254780180|r  293 TNIFITPGYRFRAVDILMSNFHLPKSTLLMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLLFQK  359 (360)
Q Consensus       293 T~lfI~Pg~~f~~vd~LiTNFH~P~Stll~Lv~Af~G~~~~~~~Y~~Ai~~~yrF~syGDamLi~~~  359 (360)
T Consensus       299 TdlfI~Pgy~fkvvD~LiTNFHlPkSTLlmLVsAfaG~~~~~~aY~~Ai~~~YRF~SyGDamLI~rk  365 (366)
T PRK01424        299 TDIFITPGFKFQTADMLLTNFHFPKSTLFMLICAFAGFKEMHELYKYAIKEKMRFFSYGDATLLYRK  365 (366)
T ss_pred             CCEEECCCCCCCEECEEEECCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHHEECC
T ss_conf             2869789898858186454674782599999999579699999999999879861052305525336

Probab=100.00  E-value=0  Score=589.70  Aligned_cols=217  Identities=46%  Similarity=0.754  Sum_probs=204.1

Q ss_pred             CCCCCCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEEHHHHHHHCCCCCEEEEECCCEEEEEEEEEEECCCC
Q ss_conf             98633588889778616998781203135663788875315310143478726988799994795688899876404677
Q gi|254780180|r    1 MMVKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIVFNNTKVITAQLNGVRFCHIN   80 (360)
Q Consensus         1 M~lsdfDy~LP~elIAq~P~~~Rd~SRLLV~~r~~~~~~~i~h~~F~dl~~~L~~gDLLV~NnTKVipARL~g~k~~~~~   80 (360)
T Consensus         1 m~ls~fdy~LP~elIAq~P~~~Rd~sRLLv~~~~~~---~i~h~~F~dl~~~L~~gDlLV~NnTkVipARL~g~k-----   72 (218)
T pfam02547         1 MKLSDFDYELPEELIAQYPAEPRDSSRLLVLDRETG---EIEHRRFSDLPDYLRPGDLLVFNDTRVIPARLFGRK-----   72 (218)
T ss_pred             CCHHHCCCCCCHHHHCCCCCCCCCCCEEEEEECCCC---CEEEEEHHHHHHHHCCCCEEEECCCEEEEEEEEEEE-----
T ss_conf             953452889993897589999976454888988999---577767867698766598899738879998999994-----


Q ss_pred             CCCCEEEEEEECCCCCCCHHHHHHCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCEEEEECCC-CCCHHHHHHHHHC
Q ss_conf             776505899811248661011221156436985799705788740699996035577249997267-8630002544203
Q gi|254780180|r   81 RREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQDGQSRLEATVIDKWNTGEILLVFSIS-GIELERQISLVGT  159 (360)
Q Consensus        81 ~~g~~ieill~~~~~~~~w~~l~kp~kklk~G~~l~~~~~~~~~~l~~~vi~~~~~g~~~i~f~~~-~~~~~~~L~~~G~  159 (360)
T Consensus        73 ~tgg~vEill~~~l~~~~w~~lik~~kk~k~G~~l~~~~-----~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~l~~~G~  147 (218)
T pfam02547        73 ETGGKVEVLLLRPLDDGRWLALVKPSKKLKPGDTLEFGD-----GLKAEVLERLEEGGRLVRFQFEGGEDLLELLERYGH  147 (218)
T ss_pred             CCCCEEEEEEEEECCCCEEEEEEEECCCCCCCCEEEECC-----CCEEEEEEEECCCCEEEEEEECCCCHHHHHHHHCCC
T ss_conf             689989999985548986999996079999899999699-----818999998579866999993785319999997599


Q ss_pred             CCCCHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCC
Q ss_conf             5785222123456521143310134567574005556887899999999972155303787316566578874
Q gi|254780180|r  160 IPLPPYIARKRPIDARDYVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKV  232 (360)
Q Consensus       160 iPLPPYI~r~r~~~~~D~~~YQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~  232 (360)
T Consensus       148 ~PLPPYI--~R~~~~~D~~~YQTVfA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~i~~iTLHVG~GTF~Pvrv  218 (218)
T pfam02547       148 IPLPPYI--KRPDEEEDRERYQTVYAKKPGSVAAPTAGLHFTPELLERLKAKGVEIAFVTLHVGAGTFLPVRV  218 (218)
T ss_pred             CCCCCCC--CCCCCHHHHHHHCCCCCCCCCCEECCCCCCCCCHHHHHHHHHCCCEEEEEEEEECCCCCCCCCC
T ss_conf             8998201--5776401266635201599984666868677999999999988984999998366987567529

Queuosine (Q) biosynthesis protein, or S-adenosylmethionine:tRNA -ribosyltransferase-isomerase, is required for the synthesis of the queuosine precursor (oQ). Q is a hypermodified nucleoside usually found at the first position of the anticodon of asparagine, aspartate, histidine, and tyrosine tRNAs.

Probab=95.48  E-value=0.0049  Score=42.85  Aligned_cols=62  Identities=34%  Similarity=0.548  Sum_probs=44.5

Q ss_pred             CCCHHHHCCCCCCCCCCCCCCCCCCCCCH-----HHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHEEEC
Q ss_conf             21143310134567574005556887899-----9999999721553037873165665788741013566770007785
Q gi|254780180|r  174 ARDYVDYQTTYAKIQGSVAAPTAGLHFTS-----NLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSEIGFID  248 (360)
Q Consensus       174 ~~D~~~YQTVyA~~~GSVAAPTAGLHFt~-----~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~mH~E~~~i~  248 (360)
T Consensus       875 Lskr~TG~TLYiLDE-----PTTGLHf~Di~kLL~VlqrLv~~GNTvv------------------vIEHNLD-------  924 (956)
T TIGR00630       875 LSKRSTGRTLYILDE-----PTTGLHFDDIKKLLEVLQRLVDKGNTVV------------------VIEHNLD-------  924 (956)
T ss_pred             HCCCCCCCEEEEECC-----CCCCCHHHHHHHHHHHHHHHHHCCCEEE------------------EEEECCC-------
T ss_conf             078777875899628-----7977418999999999999985499699------------------9965485-------


Q ss_pred             HHHHHHHHHHH----------HCCCEEEEECH
Q ss_conf             99999999875----------37980999628
Q gi|254780180|r  249 APTAQALNSVK----------SRGGRIVSVGT  270 (360)
Q Consensus       249 ~~~~~~I~~ak----------~~g~rIiAVGT  270 (360)
T Consensus       925 -----VIK~ADyIIDLGPEGG~~GG~ivA~Gt  951 (956)
T TIGR00630       925 -----VIKTADYIIDLGPEGGDRGGTIVASGT  951 (956)
T ss_pred             -----EEEECCEEEECCCCCCCCCCEEEEEEC
T ss_conf             -----677425789758767778887999825

ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products . The UvrC protein contain 4 conserved regions: a central region which interact with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0009380 excinuclease repair complex.

Probab=91.14  E-value=0.41  Score=29.05  Aligned_cols=127  Identities=21%  Similarity=0.265  Sum_probs=77.7

Q ss_pred             CCCCC-CCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHEE---ECHHHHHHHHHHHH
Q ss_conf             56757-400555688789999999997215530378731656657887410135667700077---85999999998753
Q gi|254780180|r  185 AKIQG-SVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSEIGF---IDAPTAQALNSVKS  260 (360)
Q Consensus       185 A~~~G-SVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~mH~E~~~---i~~~~~~~I~~ak~  260 (360)
T Consensus        96 a~~~g~~v~l~TNG~-Ll~k~i~~~~~~~~~~~~VsLD-G~~-------------e~HD~~r~~~G~Fd~av~aIr~ak~  160 (318)
T TIGR03470        96 LVARKKFVYLCTNAL-LLEKKLDKFEPSPYLTFSVHLD-GLR-------------EHHDASVCREGVFDRAVEAIREAKA  160 (318)
T ss_pred             HHHCCCEEEEECCHH-HHHHHHHHHHHCCCCEEEEECC-CCH-------------HHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             997599799977552-0099999985188836999801-787-------------8866887179779999999999998


Q ss_pred             CCCEEEEECHHHHH--HHHHHHHCCCCCCCCCCCCCEEECCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHH
Q ss_conf             79809996287899--8999985289846888722366574096114312552775545789999998719899999999
Q gi|254780180|r  261 RGGRIVSVGTTSLR--LLETATTEDGIINPWSGFTNIFITPGYRFRAVDILMSNFHLPKSTLLMLVSAFCGIEETKKMYQ  338 (360)
Q Consensus       261 ~g~rIiAVGTT~~R--~LEs~~~~~~~~~~~~g~T~lfI~Pg~~f~~vd~LiTNFH~P~Stll~Lv~Af~G~~~~~~~Y~  338 (360)
T Consensus       161 ~G~~V-~iN~Tvf~~~n~~~i~~~~d~~~-~lgVdgi~isp~y~Ye~ap---------~q------~~fl~r~~~~~lfr  223 (318)
T TIGR03470       161 RGFRV-TTNTTLFNDTDPEEVAEFFDYLT-DLGVDGMTISPGYAYEKAP---------DQ------DHFLGRRQTKKLFR  223 (318)
T ss_pred             CCCCE-EEEEEEECCCCHHHHHHHHHHHH-HCCCCEEEECCCCCCCCCC---------CC------CCCCCHHHHHHHHH
T ss_conf             69946-79989706899999999999998-7699738976653102376---------31------11158999999999


Q ss_pred             HHHHC
Q ss_conf             99986
Q gi|254780180|r  339 HAISH  343 (360)
Q Consensus       339 ~Ai~~  343 (360)
T Consensus       224 ~il~~  228 (318)
T TIGR03470       224 EVLSN  228 (318)
T ss_pred             HHHHH
T ss_conf             99986

The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH

 Score =  343 bits (882), Expect = 3e-95
 Identities = 149/357 (41%), Positives = 210/357 (58%), Gaps = 17/357 (4%)

Query: 1   MMVKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIV 60
             V  FDF+LP   IA  P+  RD++RLMV+  +      ++D     + +F N  D +V
Sbjct: 5   SKVDLFDFELPERLIAQVPLEQRDASRLMVLDKHTG---ELTDSSFKHIISFFNEGDCLV 61

Query: 61  FNNTKVITAQLNGVRFCHINRREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQ 120
            NNT+V+ A+L G +     + E      L  + + + W   A+P+K +KKG ++ F   
Sbjct: 62  LNNTRVLPARLFGTKEDTGAKVE----LLLLKQETGDKWETLAKPAKRVKKGTVVTF--- 114

Query: 121 DGQSRLEATVIDKWNTGEILLVFSISGIELERQISLVGTIPLPPYIARKRPIDARDYVDY 180
            G  RL+A   ++   G   + F   GI  E  +  +G +PLPPYI  +      D   Y
Sbjct: 115 -GDGRLKAICTEELEHGGRKMEFQYDGIFYEV-LESLGEMPLPPYIKEQLD----DKERY 168

Query: 181 QTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIM 240
           QT Y+K  GS AAPTAGLHFT  +L +L   G+++ F+TLHVG GTF PV  ++ ++H M
Sbjct: 169 QTVYSKEIGSAAAPTAGLHFTEEILQQLKDKGVQIEFITLHVGLGTFRPVSADEVEEHNM 228

Query: 241 HSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLET-ATTEDGIINPWSGFTNIFITP 299
           H+E   +   TA ALN V+  GGRI+SVGTTS R LET A   DG     SG+T+IFI P
Sbjct: 229 HAEFYQMSEETAAALNKVRENGGRIISVGTTSTRTLETIAGEHDGQFKASSGWTSIFIYP 288

Query: 300 GYRFRAVDILMSNFHLPKSTLLMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLL 356
           GY F+A+D +++NFHLPKS+L+MLVSA  G E   + Y HA+   YRF+S+GD  L+
Sbjct: 289 GYEFKAIDGMITNFHLPKSSLIMLVSALAGRENILRAYNHAVEEEYRFFSFGDAMLI 345

 Score =  331 bits (851), Expect = 1e-91
 Identities = 140/356 (39%), Positives = 193/356 (54%), Gaps = 22/356 (6%)

Query: 1   MMVKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIV 60
           M V EFD++LPP  IA  PV PRD++RLMV+H        I   +  ++  +L   D +V
Sbjct: 13  MKVSEFDYELPPELIAQEPVEPRDASRLMVLHRKTQR---IEHRIFREIIEYLEPGDLLV 69

Query: 61  FNNTKVITAQLNGVRFCHINRREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQ 120
            N +KVI A+L   +    +     I   L  R+    W    RP + +KKG  L     
Sbjct: 70  LNVSKVIPARLYARKKTGAS-----IEILLIERLEEGIWKCLVRPGQKVKKGTELVIDED 124

Query: 121 DGQSRLEATVIDKWNTGEILLVFSISGIELERQISLVGTIPLPPYIARKRPIDARDYVDY 180
                  A  + +   G  +L F      L  +    G  PLPPYI  + P++      Y
Sbjct: 125 L-----SAVCLGRGEDGTRILKFQPQDDRLIFEK---GRTPLPPYIKNEVPLE-----RY 171

Query: 181 QTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIM 240
           QT YAK +GSVAAPTAGLHFT  L+ +L   G++   V LHVG GTF PVKVE+ + H M
Sbjct: 172 QTVYAKEEGSVAAPTAGLHFTPELIEKLKKKGVQFAEVVLHVGIGTFRPVKVEEVEKHKM 231

Query: 241 HSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIFITPG 300
           H E   +   T + L   + RG RIV+VGTT++R LET          + G T++FI P 
Sbjct: 232 HEEFYQVPKETVRKLRETRERGNRIVAVGTTTVRTLETIAR-LPEQEEYVGKTDLFIYPP 290

Query: 301 YRFRAVDILMSNFHLPKSTLLMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLL 356
           + F+ VD L++NFHLP+STLLMLV+AF G +   + Y+ A+   YRF+S+GD  L+
Sbjct: 291 FEFKLVDALVTNFHLPRSTLLMLVAAFAGKDFVMEAYREAVKRRYRFFSFGDAMLI 346

 Score =  331 bits (850), Expect = 1e-91
 Identities = 150/360 (41%), Positives = 198/360 (55%), Gaps = 20/360 (5%)

Query: 1   MM-VKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAI 59
           M  ++ +D+ LPP +IA   V PRD ARLMVV+     P  ++   V DLP FL   D +
Sbjct: 1   MEGLEAYDYHLPPEQIAQEGVEPRDMARLMVVYRE--GPFRVAHKRVRDLPEFLRPGDVL 58

Query: 60  VFNNTKVITAQLNGVRFCHINRREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFS 119
           VFN +KVI A+L             ++   L    SP  W     P++    G  L   S
Sbjct: 59  VFNESKVIPARLLA-----RKPTGGKVEILLVRERSPGLWEALLGPARKAPPGTRLLLLS 113

Query: 120 QDGQSR---LEATVIDKWNTGEILLVFSISGIELERQISLVGTIPLPPYIARKRPIDARD 176
               +    L+A V+     G  LL F    +    ++     +PLPPYI  K P     
Sbjct: 114 PKDLAPVPGLQAEVVAVEEDGVRLLRFQGDLVAHLEEVG---EVPLPPYIKAKIP----- 165

Query: 177 YVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTD 236
              YQT YA+  GSVAAPTAGLHFT  LL RL  +G+++ F+TLHVG GTF PVK  D +
Sbjct: 166 MERYQTVYARRPGSVAAPTAGLHFTPELLERLREMGVELRFLTLHVGPGTFRPVK-GDPE 224

Query: 237 DHIMHSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIF 296
            H MH+E   I    A+A+N  K+ G R+V+VGTT +R LE+A  E   +    G T +F
Sbjct: 225 KHEMHAEPYAIPEEVAEAVNRAKAEGRRVVAVGTTVVRALESAYREGVGVVAGEGETRLF 284

Query: 297 ITPGYRFRAVDILMSNFHLPKSTLLMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLL 356
           I P Y F+ VD L +NFHLP+STLLMLV+AF G E T + Y+ A++  YRFYS GD  L+
Sbjct: 285 IRPPYTFKVVDALFTNFHLPRSTLLMLVAAFLGRERTLEAYRLAVAEGYRFYSLGDAMLI 344

Probab=100.00  E-value=0  Score=1022.95  Aligned_cols=335  Identities=42%  Similarity=0.683  Sum_probs=317.8

Q ss_pred             CCCCCCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEEHHHHHHHCCCCCEEEEECCCEEEEEEEEEEECCCC
Q ss_conf             98633588889778616998781203135663788875315310143478726988799994795688899876404677
Q gi|254780180|r    1 MMVKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIVFNNTKVITAQLNGVRFCHIN   80 (360)
Q Consensus         1 M~lsdfDy~LP~elIAq~P~~~Rd~SRLLV~~r~~~~~~~i~h~~F~dl~~~L~~gDLLV~NnTKVipARL~g~k~~~~~   80 (360)
                      |+||||||+||+|||||+|+++||+|||||++++++   .|.|+.|+||++||+||||||||||||+||||+|+|     
T Consensus        13 Mklsdfdy~LP~elIAq~P~~~Rd~SRLLVl~~~~~---~i~h~~F~dl~~~L~~gDlLV~NdTkVipARL~g~k-----   84 (347)
T 1vky_A           13 MKVSEFDYELPPELIAQEPVEPRDASRLMVLHRKTQ---RIEHRIFREIIEYLEPGDLLVLNVSKVIPARLYARK-----   84 (347)
T ss_dssp             ---CTTCCCCCGGGBCSSCCSSGGGSEEEEEETTTT---EEEEEEGGGGGGGCCTTCEEEEEEEECCSCEEEEBC-----
T ss_pred             EEHHHCCCCCCHHHHCCCCCCCCCCCEEEEEECCCC---CEEEEEHHHHHHHCCCCCEEEEECCEEEEEEEEEEE-----
T ss_conf             588783989895996689999965144889988999---077756765686479998999979989887998774-----


Q ss_pred             CCCCEEEEEEECCCCCCCHHHHHHCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             77650589981124866101122115643698579970578874069999603557724999726786300025442035
Q gi|254780180|r   81 RREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQDGQSRLEATVIDKWNTGEILLVFSISGIELERQISLVGTI  160 (360)
Q Consensus        81 ~~g~~ieill~~~~~~~~w~~l~kp~kklk~G~~l~~~~~~~~~~l~~~vi~~~~~g~~~i~f~~~~~~~~~~L~~~G~i  160 (360)
                      .+|++||++++++.+++.|.|++||+||+|+|+++.+.+     .+.++++++.+.+.+.+.|+.+   .+++|+++|+|
T Consensus        85 ~tgg~vEill~~~~~~~~w~~likp~kk~k~g~~l~~~~-----~~~~~v~~~~~~~~~~~~~~~~---~~~~l~~~G~~  156 (347)
T 1vky_A           85 KTGASIEILLIERLEEGIWKCLVRPGQKVKKGTELVIDE-----DLSAVCLGRGEDGTRILKFQPQ---DDRLIFEKGRT  156 (347)
T ss_dssp             ---CCEEEEEEEEEETTEEEEEEESCTTCCTTCEEEEET-----TEEEEEEEECTTSCEEEEEESC---CHHHHHHHC--
T ss_pred             CCCCEEEEEEEEECCCCEEEEEEECCCCCCCCCEEEECC-----CCEEEEEEEECCCCEEEECCCC---HHHHHHHCCCC
T ss_conf             379709999977528983999974076789998899605-----6348999971476078851774---26899977999


Q ss_pred             CCCHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             78522212345652114331013456757400555688789999999997215530378731656657887410135667
Q gi|254780180|r  161 PLPPYIARKRPIDARDYVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIM  240 (360)
Q Consensus       161 PLPPYI~r~r~~~~~D~~~YQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~m  240 (360)
                      ||||||+|  +   .|.+|||||||+++|||||||||||||++||++|++|||++++||||||+|||+||++|+|++|+|
T Consensus       157 PLPPYI~r--~---~d~erYQTVyAk~~GSVAAPTAGLHFT~~ll~~L~~kGv~~~~vTLHVG~GTF~Pv~~e~i~~H~m  231 (347)
T 1vky_A          157 PLPPYIKN--E---VPLERYQTVYAKEEGSVAAPTAGLHFTPELIEKLKKKGVQFAEVVLHVGIGTFRPVKVEEVEKHKM  231 (347)
T ss_dssp             ----------------------------------CGGGGCCHHHHHHHHHHTCEEEEEEEEC------------------
T ss_pred             CCCCEEEC--C---CCHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCC
T ss_conf             99961745--6---418878788714898553677878779999999998499267789986467546764443455788


Q ss_pred             CCHHEEECHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCEEEEEEEECCCCCHHHH
Q ss_conf             70007785999999998753798099962878998999985289846888722366574096114312552775545789
Q gi|254780180|r  241 HSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIFITPGYRFRAVDILMSNFHLPKSTL  320 (360)
Q Consensus       241 H~E~~~i~~~~~~~I~~ak~~g~rIiAVGTT~~R~LEs~~~~~~~~~~~~g~T~lfI~Pg~~f~~vd~LiTNFH~P~Stl  320 (360)
                      |+|||+||++|+++||+||++|+|||||||||||||||++. +|.+++++|||||||+|||+|++||+||||||+|||||
T Consensus       232 H~E~~~I~~~ta~~I~~ak~~g~RIiAVGTT~~RaLEs~~~-~~~~~~~~G~T~lfI~Pgy~fkvvD~LiTNFHlPkSTL  310 (347)
T 1vky_A          232 HEEFYQVPKETVRKLRETRERGNRIVAVGTTTVRTLETIAR-LPEQEEYVGKTDLFIYPPFEFKLVDALVTNFHLPRSTL  310 (347)
T ss_dssp             CCCEEEECHHHHHHHHHHHHHTCCEEEESHHHHHHHHHHTT-SCCCSSEEECCCCCCCSSCCCSSCSEEEEECCCTTCHH
T ss_pred             CCEEEEECHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHH-HCCCCCCCCCCCEEECCCCCCCEECEEEECCCCCCCHH
T ss_conf             65589937999999999997189489995418999999875-13677778861559789998728276343573783589


Q ss_pred             HHHHHHHHCHHHHHHHHHHHHHCCCEEECCCCHHHCC
Q ss_conf             9999987198999999999998698261101022233
Q gi|254780180|r  321 LMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLLF  357 (360)
Q Consensus       321 l~Lv~Af~G~~~~~~~Y~~Ai~~~yrF~syGDamLi~  357 (360)
                      |||||||+|+++++++|++||+++||||||||||||+
T Consensus       311 l~LvsAf~G~~~~~~aY~~Ai~~~YrF~SyGDamLil  347 (347)
T 1vky_A          311 LMLVAAFAGKDFVMEAYREAVKRRYRFFSFGDAMLIL  347 (347)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHTTCCBSTTSCEEEEC
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHCCCCEECCCHHHEEC
T ss_conf             9999985896999999999998799601502230109

Probab=100.00  E-value=0  Score=1020.68  Aligned_cols=341  Identities=42%  Similarity=0.722  Sum_probs=319.7

Q ss_pred             CCCCCCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEEHHHHHHHCCCCCEEEEECCCEEEEEEEEEEECCCC
Q ss_conf             98633588889778616998781203135663788875315310143478726988799994795688899876404677
Q gi|254780180|r    1 MMVKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIVFNNTKVITAQLNGVRFCHIN   80 (360)
Q Consensus         1 M~lsdfDy~LP~elIAq~P~~~Rd~SRLLV~~r~~~~~~~i~h~~F~dl~~~L~~gDLLV~NnTKVipARL~g~k~~~~~   80 (360)
                      |+||+|||+||+|||||+|+++||+|||||++++++   +|+|+.|+||++||+||||||||||||+||||+|.|.    
T Consensus         5 mkl~~fDy~LP~eLIAq~P~~~Rd~SRLLV~~r~~~---~i~h~~F~dl~~~L~~gDlLV~NnTkVipARL~g~k~----   77 (346)
T 1yy3_A            5 SKVDLFDFELPERLIAQVPLEQRDASRLMVLDKHTG---ELTDSSFKHIISFFNEGDCLVLNNTRVLPARLFGTKE----   77 (346)
T ss_dssp             ---CCSCCCCCTTTBCSSCCTTSTTSBEEECCTTTC---CCCCCBTTGGGGGCCTTEEEEECCCCSCCEEEEEEES----
T ss_pred             CCHHHCCCCCCHHHHCCCCCCCCCCCEEEEEECCCC---CEEEEEHHHHHHHCCCCCEEEEECCEEEEEEEEEEEC----
T ss_conf             734114889994897689999976352878988999---0677655126764799989999899988558985744----


Q ss_pred             CCCCEEEEEEECCCCCCCHHHHHHCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             77650589981124866101122115643698579970578874069999603557724999726786300025442035
Q gi|254780180|r   81 RREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQDGQSRLEATVIDKWNTGEILLVFSISGIELERQISLVGTI  160 (360)
Q Consensus        81 ~~g~~ieill~~~~~~~~w~~l~kp~kklk~G~~l~~~~~~~~~~l~~~vi~~~~~g~~~i~f~~~~~~~~~~L~~~G~i  160 (360)
                      .+|+++|+++++..+++.|.|++||+||+++|+++.|.+..    ..+.+.+..+.+.+.++|..++ ++.++|+++|+|
T Consensus        78 ~~g~~veill~~~~~~~~w~al~kp~kk~~~g~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~G~~  152 (346)
T 1yy3_A           78 DTGAKVELLLLKQETGDKWETLAKPAKRVKKGTVVTFGDGR----LKAICTEELEHGGRKMEFQYDG-IFYEVLESLGEM  152 (346)
T ss_dssp             SSSCCEEEEEEEECSTTEEEEEETTGGGSCTTCEEEETTSS----SEEEEEEECTTSCEEEEEECSS-CHHHHHHHHHTC
T ss_pred             CCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCEEEECCCC----EEEEEEEEECCCCEEEEECCCC-CHHHHHHHCCCC
T ss_conf             88866999861124687479985156666778689956983----7999999806883899962787-289999972899


Q ss_pred             CCCHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             78522212345652114331013456757400555688789999999997215530378731656657887410135667
Q gi|254780180|r  161 PLPPYIARKRPIDARDYVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIM  240 (360)
Q Consensus       161 PLPPYI~r~r~~~~~D~~~YQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~m  240 (360)
                      ||||||+|+  +  .|.+|||||||+++|||||||||||||++||++|++|||++++||||||+|||+||++|+|++|+|
T Consensus       153 PLPPYI~r~--~--~D~~rYQTVyA~~~GSvAAPTAGLHFt~~ll~~L~~kGv~i~~iTLHVG~GTF~Pv~~e~i~~h~m  228 (346)
T 1yy3_A          153 PLPPYIKEQ--L--DDKERYQTVYSKEIGSAAAPTAGLHFTEEILQQLKDKGVQIEFITLHVGLGTFRPVSADEVEEHNM  228 (346)
T ss_dssp             CCCHHHHTT--S--SSCC------------CCCCSSTTCCCHHHHHHHHHHTEEEEECEEESGGGGGC-----------C
T ss_pred             CCCCCCCCC--C--CHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCC
T ss_conf             999550356--0--219999999721689702887888789999999998698599999961477657766554445788


Q ss_pred             CCHHEEECHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHC-CCCCCCCCCCCCEEECCCCCCEEEEEEEECCCCCHHH
Q ss_conf             700077859999999987537980999628789989999852-8984688872236657409611431255277554578
Q gi|254780180|r  241 HSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTE-DGIINPWSGFTNIFITPGYRFRAVDILMSNFHLPKST  319 (360)
Q Consensus       241 H~E~~~i~~~~~~~I~~ak~~g~rIiAVGTT~~R~LEs~~~~-~~~~~~~~g~T~lfI~Pg~~f~~vd~LiTNFH~P~St  319 (360)
                      |+|||+||++|+++||+||++|||||||||||||||||++.. +|.+++++|||||||+|||+|++||+||||||+||||
T Consensus       229 H~E~~~i~~~t~~~I~~ak~~g~rIiAVGTT~~RaLEs~~~~~~g~~~~~~g~T~lfI~Pg~~f~~vd~LiTNFH~P~St  308 (346)
T 1yy3_A          229 HAEFYQMSEETAAALNKVRENGGRIISVGTTSTRTLETIAGEHDGQFKASSGWTSIFIYPGYEFKAIDGMITNFHLPKSS  308 (346)
T ss_dssp             CCEEEEECHHHHHHHHHHHHTTCCEEEECTTTHHHHHHHHHTTTSCCCCEEEEECCCCCTTCCCSSCSEEEEECCCTTSS
T ss_pred             CCEEEEECHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCEECCCEECCCCCCCH
T ss_conf             76689824999999999997599099994516888898875049960688864281877999788828666357278458


Q ss_pred             HHHHHHHHHCHHHHHHHHHHHHHCCCEEECCCCHHHCC
Q ss_conf             99999987198999999999998698261101022233
Q gi|254780180|r  320 LLMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLLF  357 (360)
Q Consensus       320 ll~Lv~Af~G~~~~~~~Y~~Ai~~~yrF~syGDamLi~  357 (360)
                      ||||||||+|+++|+++|++||+++||||||||||||+
T Consensus       309 ll~Lv~Af~g~~~~~~~Y~~Ai~~~yrf~syGDamlil  346 (346)
T 1yy3_A          309 LIMLVSALAGRENILRAYNHAVEEEYRFFSFGDAMLII  346 (346)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHTTCCBSSSSCEEEC-
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHEEC
T ss_conf             99999995897999999999998798501502432009

Probab=100.00  E-value=0  Score=1021.10  Aligned_cols=341  Identities=44%  Similarity=0.676  Sum_probs=319.1

Q ss_pred             CCCCCCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEEHHHHHHHCCCCCEEEEECCCEEEEEEEEEEECCCC
Q ss_conf             98633588889778616998781203135663788875315310143478726988799994795688899876404677
Q gi|254780180|r    1 MMVKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIVFNNTKVITAQLNGVRFCHIN   80 (360)
Q Consensus         1 M~lsdfDy~LP~elIAq~P~~~Rd~SRLLV~~r~~~~~~~i~h~~F~dl~~~L~~gDLLV~NnTKVipARL~g~k~~~~~   80 (360)
                      |.||||||+||++||||+|+++||+|||||++++++.  +|+|+.|+||++||+||||||||||||+||||+|+|     
T Consensus         2 ~~L~~fdy~LP~elIAq~P~~~Rd~sRLLV~~r~~~~--~i~h~~F~dl~~~L~~gDlLV~NdTkVipARL~g~k-----   74 (345)
T 1wdi_A            2 EGLEAYDYHLPPEQIAQEGVEPRDMARLMVVYREGPF--RVAHKRVRDLPEFLRPGDVLVFNESKVIPARLLARK-----   74 (345)
T ss_dssp             CGGGGGCCCCCGGGBCSSCCSSGGGSEEEEECSSSSC--CEEEEEGGGHHHHCCTTCEEEEEEEEECCEEEEEEC-----
T ss_pred             CCHHHCCCCCCHHHHCCCCCCCCCCCEEEEEECCCCC--EEEECCHHHHHHHCCCCCEEEEECCEEEEEEEEEEC-----
T ss_conf             9655669998948966899999621238999889998--575331634675479998999989989788999771-----


Q ss_pred             CCCCEEEEEEECCCCCCCHHHHHHCCCCCCCCCEEEECCCCCCC---CEEEEEEECCCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf             77650589981124866101122115643698579970578874---069999603557724999726786300025442
Q gi|254780180|r   81 RREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQDGQS---RLEATVIDKWNTGEILLVFSISGIELERQISLV  157 (360)
Q Consensus        81 ~~g~~ieill~~~~~~~~w~~l~kp~kklk~G~~l~~~~~~~~~---~l~~~vi~~~~~g~~~i~f~~~~~~~~~~L~~~  157 (360)
                      .+|++||+++++..+++.|.|++||+||+++|+++.+.+.....   .+.+++++..+.+.++++|+.   ++.++|+++
T Consensus        75 ~tgg~vEilll~~~~~~~w~al~k~~kk~k~G~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~~~~l~~~  151 (345)
T 1wdi_A           75 PTGGKVEILLVRERSPGLWEALLGPARKAPPGTRLLLLSPKDLAPVPGLQAEVVAVEEDGVRLLRFQG---DLVAHLEEV  151 (345)
T ss_dssp             TTSCEEEEEECBCC------CCBCCCSCCCSCEEEEECTTTTSCEEEEEEEECCCSSCC-------------CCEEESCC
T ss_pred             CCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCEEEECCCCCCEECCCCEEEEEEEECCCCEEEEEHH---HHHHHHHHC
T ss_conf             78970799986325787304530355678989889954874200005726999998068727986103---689999975


Q ss_pred             HCCCCCHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf             03578522212345652114331013456757400555688789999999997215530378731656657887410135
Q gi|254780180|r  158 GTIPLPPYIARKRPIDARDYVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDD  237 (360)
Q Consensus       158 G~iPLPPYI~r~r~~~~~D~~~YQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~  237 (360)
                      |+|||||||+|+     .|.+|||||||+++|||||||||||||++||++|++|||++++||||||+|||+||+ +++.+
T Consensus       152 G~~PLPPYI~r~-----~d~~rYQTVyAk~~GSVAAPTAGLHFt~~ll~~l~~kgi~~~~iTLHVG~GTF~PV~-~~i~~  225 (345)
T 1wdi_A          152 GEVPLPPYIKAK-----IPMERYQTVYARRPGSVAAPTAGLHFTPELLERLREMGVELRFLTLHVGPGTFRPVK-GDPEK  225 (345)
T ss_dssp             CSCC------------------------------CCCCGGGGCCHHHHHHHHHTTCEEEEEEEEESGGGCCC--------
T ss_pred             CCCCCCHHHHCC-----CHHHHHHHHHCCCCCCEECCCCCCCCCHHHHHHHHHCCCEEEEEEEECCCCCCCCCC-CCCCC
T ss_conf             998888677223-----257663246406898550676878779999999998698089999963677504544-54346


Q ss_pred             CCCCCHHEEECHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCEEEEEEEECCCCCH
Q ss_conf             66770007785999999998753798099962878998999985289846888722366574096114312552775545
Q gi|254780180|r  238 HIMHSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIFITPGYRFRAVDILMSNFHLPK  317 (360)
Q Consensus       238 h~mH~E~~~i~~~~~~~I~~ak~~g~rIiAVGTT~~R~LEs~~~~~~~~~~~~g~T~lfI~Pg~~f~~vd~LiTNFH~P~  317 (360)
                      |+||+|||+||++|+++||+||++|+|||||||||||||||++..+|.+++++|||||||+|||+|++||+||||||+||
T Consensus       226 H~mH~E~~~I~~~t~~~I~~ak~~g~rIiAVGTT~~RaLEs~~~~~~~~~~~~g~T~lfI~Pgy~f~vvd~LlTNFHlPk  305 (345)
T 1wdi_A          226 HEMHAEPYAIPEEVAEAVNRAKAEGRRVVAVGTTVVRALESAYREGVGVVAGEGETRLFIRPPYTFKVVDALFTNFHLPR  305 (345)
T ss_dssp             --CCCEEEEECHHHHHHHHHHHHTTCCEEEESHHHHHHHHHTEETTTEECCEEEEECCCCCSSCCCSSCSEEEEECCCTT
T ss_pred             CCCCCEEEEECHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCCCCCEECEEECCCCCCCEECEEEECCCCCC
T ss_conf             78765389966999999999997499299992408999999996189604678605859639898758176344573784


Q ss_pred             HHHHHHHHHHHCHHHHHHHHHHHHHCCCEEECCCCHHHCC
Q ss_conf             7899999987198999999999998698261101022233
Q gi|254780180|r  318 STLLMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLLF  357 (360)
Q Consensus       318 Stll~Lv~Af~G~~~~~~~Y~~Ai~~~yrF~syGDamLi~  357 (360)
                      ||||||||||+|+++|+++|++||+++||||||||||||+
T Consensus       306 STLl~LvsAf~G~~~~~~~Y~~Ai~~~YrF~SyGDamlil  345 (345)
T 1wdi_A          306 STLLMLVAAFLGRERTLEAYRLAVAEGYRFYSLGDAMLIL  345 (345)
T ss_dssp             CHHHHHHHHHHCHHHHHHHHHHHHHTTCCBSTTSCEEEEC
T ss_pred             CHHHHHHHHHCCHHHHHHHHHHHHHCCCCEECCCHHHEEC
T ss_conf             5899999995898999999999998698344412431109

class: Multi-domain proteins (alpha and beta)
fold: QueA-like
superfamily: QueA-like
family: QueA-like
domain: Queuosine biosynthesis protein queA
species: Thermus thermophilus [TaxId: 274]

 Score =  329 bits (844), Expect = 3e-91
 Identities = 149/355 (41%), Positives = 196/355 (55%), Gaps = 19/355 (5%)

Query: 5   EFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIVFNNT 64
            +D+ LPP +IA   V PRD ARLMVV+     P  ++   V DLP FL   D +VFN +
Sbjct: 5   AYDYHLPPEQIAQEGVEPRDMARLMVVYRE--GPFRVAHKRVRDLPEFLRPGDVLVFNES 62

Query: 65  KVITAQLNGVRFCHINRREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQDGQS 124
           KVI A+L   +         ++   L    SP  W     P++    G  L   S    +
Sbjct: 63  KVIPARLLARKPTG-----GKVEILLVRERSPGLWEALLGPARKAPPGTRLLLLSPKDLA 117

Query: 125 R---LEATVIDKWNTGEILLVFSISGIELERQISLVGTIPLPPYIARKRPIDARDYVDYQ 181
               L+A V+     G  LL F    +    ++     +PLPPYI  K P        YQ
Sbjct: 118 PVPGLQAEVVAVEEDGVRLLRFQGDLVAHLEEVG---EVPLPPYIKAKIP-----MERYQ 169

Query: 182 TTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMH 241
           T YA+  GSVAAPTAGLHFT  LL RL  +G+++ F+TLHVG GTF PVK  D + H MH
Sbjct: 170 TVYARRPGSVAAPTAGLHFTPELLERLREMGVELRFLTLHVGPGTFRPVK-GDPEKHEMH 228

Query: 242 SEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIFITPGY 301
           +E   I    A+A+N  K+ G R+V+VGTT +R LE+A  E   +    G T +FI P Y
Sbjct: 229 AEPYAIPEEVAEAVNRAKAEGRRVVAVGTTVVRALESAYREGVGVVAGEGETRLFIRPPY 288

Query: 302 RFRAVDILMSNFHLPKSTLLMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLL 356
            F+ VD L +NFHLP+STLLMLV+AF G E T + Y+ A++  YRFYS GD  L+
Sbjct: 289 TFKVVDALFTNFHLPRSTLLMLVAAFLGRERTLEAYRLAVAEGYRFYSLGDAMLI 343

class: Multi-domain proteins (alpha and beta)
fold: QueA-like
superfamily: QueA-like
family: QueA-like
domain: Queuosine biosynthesis protein queA
species: Thermotoga maritima [TaxId: 2336]

 Score =  315 bits (809), Expect = 3e-87
 Identities = 138/352 (39%), Positives = 191/352 (54%), Gaps = 22/352 (6%)

Query: 5   EFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIVFNNT 64
           EFD++LPP  IA  PV PRD++RLMV+H        I   +  ++  +L   D +V N +
Sbjct: 2   EFDYELPPELIAQEPVEPRDASRLMVLHRKTQR---IEHRIFREIIEYLEPGDLLVLNVS 58

Query: 65  KVITAQLNGVRFCHINRREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQDGQS 124
           KVI A+L   +    +     I   L  R+    W    RP + +KKG  L         
Sbjct: 59  KVIPARLYARKKTGAS-----IEILLIERLEEGIWKCLVRPGQKVKKGTELVIDEDL--- 110

Query: 125 RLEATVIDKWNTGEILLVFSISGIELERQISLVGTIPLPPYIARKRPIDARDYVDYQTTY 184
              A  + +   G  +L F      L  +    G  PLPPYI  + P++      YQT Y
Sbjct: 111 --SAVCLGRGEDGTRILKFQPQDDRLIFEK---GRTPLPPYIKNEVPLE-----RYQTVY 160

Query: 185 AKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSEI 244
           AK +GSVAAPTAGLHFT  L+ +L   G++   V LHVG GTF PVKVE+ + H MH E 
Sbjct: 161 AKEEGSVAAPTAGLHFTPELIEKLKKKGVQFAEVVLHVGIGTFRPVKVEEVEKHKMHEEF 220

Query: 245 GFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIFITPGYRFR 304
             +   T + L   + RG RIV+VGTT++R LET          + G T++FI P + F+
Sbjct: 221 YQVPKETVRKLRETRERGNRIVAVGTTTVRTLETIAR-LPEQEEYVGKTDLFIYPPFEFK 279

Query: 305 AVDILMSNFHLPKSTLLMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLL 356
            VD L++NFHLP+STLLMLV+AF G +   + Y+ A+   YRF+S+GD  L+
Sbjct: 280 LVDALVTNFHLPRSTLLMLVAAFAGKDFVMEAYREAVKRRYRFFSFGDAMLI 331

class: Multi-domain proteins (alpha and beta)
fold: QueA-like
superfamily: QueA-like
family: QueA-like
domain: Queuosine biosynthesis protein queA
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=0  Score=1021.26  Aligned_cols=340  Identities=44%  Similarity=0.677  Sum_probs=318.5

Q ss_pred             CCCCCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEEHHHHHHHCCCCCEEEEECCCEEEEEEEEEEECCCCC
Q ss_conf             86335888897786169987812031356637888753153101434787269887999947956888998764046777
Q gi|254780180|r    2 MVKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIVFNNTKVITAQLNGVRFCHINR   81 (360)
Q Consensus         2 ~lsdfDy~LP~elIAq~P~~~Rd~SRLLV~~r~~~~~~~i~h~~F~dl~~~L~~gDLLV~NnTKVipARL~g~k~~~~~~   81 (360)
                      -||||||+||++||||+|+++||+|||||++++++.  +|+|+.|+||++||+||||||||||||+||||+|+|     .
T Consensus         2 ~LsdfDy~LP~elIAq~P~~~Rd~SRLLVl~r~~~~--~I~h~~F~dl~~~L~~gDlLV~NnTkVipARL~g~k-----~   74 (344)
T d1wdia_           2 GLEAYDYHLPPEQIAQEGVEPRDMARLMVVYREGPF--RVAHKRVRDLPEFLRPGDVLVFNESKVIPARLLARK-----P   74 (344)
T ss_dssp             GGGGGCCCCCGGGBCSSCCSSGGGSEEEEECSSSSC--CEEEEEGGGHHHHCCTTCEEEEEEEEECCEEEEEEC-----T
T ss_pred             CHHHCCCCCCHHHHCCCCCCCCCCCEEEEEECCCCC--EEEECCHHHHHHHCCCCCEEEEECCEEEEEEEEEEE-----C
T ss_conf             734549997959976899999621128999889998--576332623676479998999989989778999781-----6


Q ss_pred             CCCEEEEEEECCCCCCCHHHHHHCCCCCCCCCEEEECCCCCC---CCEEEEEEECCCCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf             765058998112486610112211564369857997057887---40699996035577249997267863000254420
Q gi|254780180|r   82 REKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQDGQ---SRLEATVIDKWNTGEILLVFSISGIELERQISLVG  158 (360)
Q Consensus        82 ~g~~ieill~~~~~~~~w~~l~kp~kklk~G~~l~~~~~~~~---~~l~~~vi~~~~~g~~~i~f~~~~~~~~~~L~~~G  158 (360)
                      +|++||+++++..+++.|.|++||+||+++|+++.+.+....   ..+.++++.+.+.+.++++|+.   ++.++|+++|
T Consensus        75 tggkvEilll~~~~~~~w~al~kp~kk~k~G~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~~~~l~~~G  151 (344)
T d1wdia_          75 TGGKVEILLVRERSPGLWEALLGPARKAPPGTRLLLLSPKDLAPVPGLQAEVVAVEEDGVRLLRFQG---DLVAHLEEVG  151 (344)
T ss_dssp             TSCEEEEEECBCC------CCBCCCSCCCSCEEEEECTTTTSCEEEEEEEECCCSSCC-------------CCEEESCCC
T ss_pred             CCCEEEEEEECCCCCCEEEEEECCCCCCCCCCEEEECCCCCCCCCCCCEEEEEEECCCCCEEEEECC---CHHHHHHHHC
T ss_conf             8974999983124897089995336778999889953764322236736999998068847997222---0677788755


Q ss_pred             CCCCCHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf             35785222123456521143310134567574005556887899999999972155303787316566578874101356
Q gi|254780180|r  159 TIPLPPYIARKRPIDARDYVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDH  238 (360)
Q Consensus       159 ~iPLPPYI~r~r~~~~~D~~~YQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h  238 (360)
                      +|||||||+|+     .|.+|||||||+++|||||||||||||++||++|++|||++++||||||+|||+||++ ++.+|
T Consensus       152 ~~PLPPYI~r~-----~d~~rYQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~vTLHVG~GTF~Pv~~-~~~~H  225 (344)
T d1wdia_         152 EVPLPPYIKAK-----IPMERYQTVYARRPGSVAAPTAGLHFTPELLERLREMGVELRFLTLHVGPGTFRPVKG-DPEKH  225 (344)
T ss_dssp             SCC------------------------------CCCCGGGGCCHHHHHHHHHTTCEEEEEEEEESGGGCCC---------
T ss_pred             CCCCCHHHHCC-----HHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEEEEECCCCCCCCCC-CCCCC
T ss_conf             79988023112-----2676566564168987516645577899999999974061567999623443355334-32357


Q ss_pred             CCCCHHEEECHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCEEEEEEEECCCCCHH
Q ss_conf             67700077859999999987537980999628789989999852898468887223665740961143125527755457
Q gi|254780180|r  239 IMHSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIFITPGYRFRAVDILMSNFHLPKS  318 (360)
Q Consensus       239 ~mH~E~~~i~~~~~~~I~~ak~~g~rIiAVGTT~~R~LEs~~~~~~~~~~~~g~T~lfI~Pg~~f~~vd~LiTNFH~P~S  318 (360)
                      +||+|||+||++|+++||+||++|+|||||||||||||||++..+|.+++++|||||||+|||+|++||+||||||+|||
T Consensus       226 ~mH~E~~~i~~~t~~~i~~ak~~g~rIiAVGTT~~RaLEs~~~~~~~~~~~~g~T~lfI~Pg~~f~~vd~LlTNFHlP~S  305 (344)
T d1wdia_         226 EMHAEPYAIPEEVAEAVNRAKAEGRRVVAVGTTVVRALESAYREGVGVVAGEGETRLFIRPPYTFKVVDALFTNFHLPRS  305 (344)
T ss_dssp             -CCCEEEEECHHHHHHHHHHHHTTCCEEEESHHHHHHHHHTEETTTEECCEEEEECCCCCSSCCCSSCSEEEEECCCTTC
T ss_pred             CCCCEEEEECHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCEECEEEECCCCCCC
T ss_conf             88874999839999999999973995899957899999999970898577887568697899977481862446847802


Q ss_pred             HHHHHHHHHHCHHHHHHHHHHHHHCCCEEECCCCHHHCC
Q ss_conf             899999987198999999999998698261101022233
Q gi|254780180|r  319 TLLMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLLF  357 (360)
Q Consensus       319 tll~Lv~Af~G~~~~~~~Y~~Ai~~~yrF~syGDamLi~  357 (360)
                      |||||||||+|+++|+++|++||+++||||||||||||+
T Consensus       306 tll~Lv~af~g~~~~~~~Y~~Ai~~~YrF~SyGDamlil  344 (344)
T d1wdia_         306 TLLMLVAAFLGRERTLEAYRLAVAEGYRFYSLGDAMLIL  344 (344)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHTTCCBSTTSCEEEEC
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHCCCCEECCCHHHEEC
T ss_conf             999999995795999999999998799333303321109

class: Multi-domain proteins (alpha and beta)
fold: QueA-like
superfamily: QueA-like
family: QueA-like
domain: Queuosine biosynthesis protein queA
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=0  Score=1014.50  Aligned_cols=332  Identities=42%  Similarity=0.683  Sum_probs=314.4

Q ss_pred             CCCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEEHHHHHHHCCCCCEEEEECCCEEEEEEEEEEECCCCCCC
Q ss_conf             33588889778616998781203135663788875315310143478726988799994795688899876404677776
Q gi|254780180|r    4 KEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIVFNNTKVITAQLNGVRFCHINRRE   83 (360)
Q Consensus         4 sdfDy~LP~elIAq~P~~~Rd~SRLLV~~r~~~~~~~i~h~~F~dl~~~L~~gDLLV~NnTKVipARL~g~k~~~~~~~g   83 (360)
                      |||||+||++||||+|+++||+|||||++++++   .|+|+.|+||++||+||||||||||||+||||+|+|     .+|
T Consensus         1 SdfDy~LP~elIAq~P~~~Rd~SRLLVl~r~~~---~i~h~~F~dl~~~L~~gDlLV~NnTkVipARL~g~k-----~tg   72 (332)
T d1vkya_           1 SEFDYELPPELIAQEPVEPRDASRLMVLHRKTQ---RIEHRIFREIIEYLEPGDLLVLNVSKVIPARLYARK-----KTG   72 (332)
T ss_dssp             CTTCCCCCGGGBCSSCCSSGGGSEEEEEETTTT---EEEEEEGGGGGGGCCTTCEEEEEEEECCSCEEEEBC--------
T ss_pred             CCCCCCCCHHHHCCCCCCCCCCCEEEEEECCCC---CEEEEEHHHHHHHCCCCCEEEEECCEEEEEEEEEEC-----CCC
T ss_conf             997888993896689999965144888988999---178766765686479998999979989888999982-----456


Q ss_pred             CEEEEEEECCCCCCCHHHHHHCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf             50589981124866101122115643698579970578874069999603557724999726786300025442035785
Q gi|254780180|r   84 KEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQDGQSRLEATVIDKWNTGEILLVFSISGIELERQISLVGTIPLP  163 (360)
Q Consensus        84 ~~ieill~~~~~~~~w~~l~kp~kklk~G~~l~~~~~~~~~~l~~~vi~~~~~g~~~i~f~~~~~~~~~~L~~~G~iPLP  163 (360)
                      ++||++++++.+++.|.|++||+||+|+|+++.+.+     .+.++|+++...+.+.+.|+.+   .+++|+++|+||||
T Consensus        73 gkvEilll~~~~~~~w~~likp~kk~k~g~~l~~~~-----~~~~~v~~~~~~~~~~~~~~~~---~~~~l~~~G~~PLP  144 (332)
T d1vkya_          73 ASIEILLIERLEEGIWKCLVRPGQKVKKGTELVIDE-----DLSAVCLGRGEDGTRILKFQPQ---DDRLIFEKGRTPLP  144 (332)
T ss_dssp             CCEEEEEEEEEETTEEEEEEESCTTCCTTCEEEEET-----TEEEEEEEECTTSCEEEEEESC---CHHHHHHHC-----
T ss_pred             CCEEEEEEEECCCCEEEEEECCCCCCCCCEEEEECC-----CCEEEEEEECCCCEEEEECCCC---CHHHHHHCCCCCCC
T ss_conf             737688774047846999964666774332887437-----7306999851551267622675---36789866898889


Q ss_pred             HHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             22212345652114331013456757400555688789999999997215530378731656657887410135667700
Q gi|254780180|r  164 PYIARKRPIDARDYVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSE  243 (360)
Q Consensus       164 PYI~r~r~~~~~D~~~YQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~mH~E  243 (360)
                      |||+|  +   .|.+|||||||+++|||||||||||||++||++|++|||++++||||||+|||+||++|+|++|+||+|
T Consensus       145 PYI~r--~---~d~~rYQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kgv~~~~iTLHVG~GTF~Pv~~e~i~~h~mh~E  219 (332)
T d1vkya_         145 PYIKN--E---VPLERYQTVYAKEEGSVAAPTAGLHFTPELIEKLKKKGVQFAEVVLHVGIGTFRPVKVEEVEKHKMHEE  219 (332)
T ss_dssp             -------------------------------CGGGGCCHHHHHHHHHHTCEEEEEEEEC------------------CCC
T ss_pred             CHHCC--C---CHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf             31125--4---169999988741278603776667678999999998399457899985244466666442245677510


Q ss_pred             HEEECHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCEEEEEEEECCCCCHHHHHHH
Q ss_conf             07785999999998753798099962878998999985289846888722366574096114312552775545789999
Q gi|254780180|r  244 IGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIFITPGYRFRAVDILMSNFHLPKSTLLML  323 (360)
Q Consensus       244 ~~~i~~~~~~~I~~ak~~g~rIiAVGTT~~R~LEs~~~~~~~~~~~~g~T~lfI~Pg~~f~~vd~LiTNFH~P~Stll~L  323 (360)
                      ||+||++|+++||+||++|+|||||||||||||||++. +|.+++++|||||||+|||+|++||+||||||+||||||||
T Consensus       220 ~~~I~~~t~~~i~~ak~~g~rIiAVGTT~~R~LEs~~~-~~~~~~~~G~T~lfI~Pgy~f~~vd~LiTNFHlPkStll~L  298 (332)
T d1vkya_         220 FYQVPKETVRKLRETRERGNRIVAVGTTTVRTLETIAR-LPEQEEYVGKTDLFIYPPFEFKLVDALVTNFHLPRSTLLML  298 (332)
T ss_dssp             EEEECHHHHHHHHHHHHHTCCEEEESHHHHHHHHHHTT-SCCCSSEEECCCCCCCSSCCCSSCSEEEEECCCTTCHHHHH
T ss_pred             EEECCHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHH-HCCCCCCCCCCCEEECCCCCCEEECEEEECCCCCCCHHHHH
T ss_conf             02168999999999997299589984689999999997-42356567860469779998618285123684881289999


Q ss_pred             HHHHHCHHHHHHHHHHHHHCCCEEECCCCHHHCC
Q ss_conf             9987198999999999998698261101022233
Q gi|254780180|r  324 VSAFCGIEETKKMYQHAISHAYRFYSYGDTSLLF  357 (360)
Q Consensus       324 v~Af~G~~~~~~~Y~~Ai~~~yrF~syGDamLi~  357 (360)
                      ||||+|+++++++|++||+++||||||||||||+
T Consensus       299 vsAf~g~~~~~~~Y~~Ai~~~yrF~syGDamlil  332 (332)
T d1vkya_         299 VAAFAGKDFVMEAYREAVKRRYRFFSFGDAMLIL  332 (332)
T ss_dssp             HHHHHCHHHHHHHHHHHHHTTCCBSTTSCEEEEC
T ss_pred             HHHHCCHHHHHHHHHHHHHCCCCEECCCHHHEEC
T ss_conf             9985796999999999998799523314121119

 Score =  396 bits (1019), Expect = e-111
 Identities = 151/361 (41%), Positives = 202/361 (55%), Gaps = 20/361 (5%)

Query: 1   MM-VKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAI 59
           M  ++ +D+ LPP +IA   V PRD ARLMVV+     P  ++   V DLP FL   D +
Sbjct: 1   MEGLEAYDYHLPPEQIAQEGVEPRDMARLMVVYRE--GPFRVAHKRVRDLPEFLRPGDVL 58

Query: 60  VFNNTKVITAQLNGVRFCHINRREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFS 119
           VFN +KVI A+L   +         ++   L    SP  W     P++    G  L   S
Sbjct: 59  VFNESKVIPARLLARK-----PTGGKVEILLVRERSPGLWEALLGPARKAPPGTRLLLLS 113

Query: 120 QDGQS---RLEATVIDKWNTGEILLVFSISGIELERQISLVGTIPLPPYIARKRPIDARD 176
               +    L+A V+     G  LL F    +    ++   G +PLPPYI  K P++   
Sbjct: 114 PKDLAPVPGLQAEVVAVEEDGVRLLRFQGDLVAHLEEV---GEVPLPPYIKAKIPME--- 167

Query: 177 YVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTD 236
              YQT YA+  GSVAAPTAGLHFT  LL RL  +G+++ F+TLHVG GTF PVK  D +
Sbjct: 168 --RYQTVYARRPGSVAAPTAGLHFTPELLERLREMGVELRFLTLHVGPGTFRPVK-GDPE 224

Query: 237 DHIMHSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIF 296
            H MH+E   I    A+A+N  K+ G R+V+VGTT +R LE+A  E   +    G T +F
Sbjct: 225 KHEMHAEPYAIPEEVAEAVNRAKAEGRRVVAVGTTVVRALESAYREGVGVVAGEGETRLF 284

Query: 297 ITPGYRFRAVDILMSNFHLPKSTLLMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLL 356
           I P Y F+ VD L +NFHLP+STLLMLV+AF G E T + Y+ A++  YRFYS GD  L+
Sbjct: 285 IRPPYTFKVVDALFTNFHLPRSTLLMLVAAFLGRERTLEAYRLAVAEGYRFYSLGDAMLI 344

Query: 357 F 357
            
Sbjct: 345 L 345

 Score =  252 bits (646), Expect = 4e-68
 Identities = 92/174 (52%), Positives = 121/174 (69%), Gaps = 1/174 (0%)

Query: 184 YAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSE 243
           Y+K  GS AAPTAGLHFT  +L +L   G+++ F+TLHVG GTF PV  ++ ++H MH+E
Sbjct: 69  YSKEIGSAAAPTAGLHFTEEILQQLKDKGVQIEFITLHVGLGTFRPVSADEVEEHNMHAE 128

Query: 244 IGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLET-ATTEDGIINPWSGFTNIFITPGYR 302
              +   TA ALN V+  GGRI+SVGTTS R LET A   DG     SG+T+IFI PGY 
Sbjct: 129 FYQMSEETAAALNKVRENGGRIISVGTTSTRTLETIAGEHDGQFKASSGWTSIFIYPGYE 188

Query: 303 FRAVDILMSNFHLPKSTLLMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLL 356
           F+A+D +++NFHLPKS+L+MLVSA  G E   + Y HA+   YRF+S+GD  L+
Sbjct: 189 FKAIDGMITNFHLPKSSLIMLVSALAGRENILRAYNHAVEEEYRFFSFGDAMLI 242

 Score =  249 bits (638), Expect = 3e-67
 Identities = 84/174 (48%), Positives = 113/174 (64%), Gaps = 1/174 (0%)

Query: 184 YAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIMHSE 243
           YAK +GSVAAPTAGLHFT  L+ +L   G++   V LHVG GTF PVKVE+ + H MH E
Sbjct: 78  YAKEEGSVAAPTAGLHFTPELIEKLKKKGVQFAEVVLHVGIGTFRPVKVEEVEKHKMHEE 137

Query: 244 IGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIFITPGYRF 303
              +   T + L   + RG RIV+VGTT++R LET          + G T++FI P + F
Sbjct: 138 FYQVPKETVRKLRETRERGNRIVAVGTTTVRTLETIAR-LPEQEEYVGKTDLFIYPPFEF 196

Query: 304 RAVDILMSNFHLPKSTLLMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLLF 357
           + VD L++NFHLP+STLLMLV+AF G +   + Y+ A+   YRF+S+GD  L+ 
Sbjct: 197 KLVDALVTNFHLPRSTLLMLVAAFAGKDFVMEAYREAVKRRYRFFSFGDAMLIL 250

 Score = 88.6 bits (220), Expect = 1e-18
 Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 3/73 (4%)

Query: 1  MMVKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIV 60
            V  FDF+LP   IA  P+  RD++RLMV+  +      ++D     + +F N  D +V
Sbjct: 5  SKVDLFDFELPERLIAQVPLEQRDASRLMVLDKHTGE---LTDSSFKHIISFFNEGDCLV 61

Query: 61 FNNTKVITAQLNG 73
           NNT+V+ ++  G
Sbjct: 62 LNNTRVVYSKEIG 74

 Score = 87.9 bits (218), Expect = 2e-18
 Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 3/67 (4%)

Query: 1  MMVKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIV 60
          M V EFD++LPP  IA  PV PRD++RLMV+H        I   +  ++  +L   D +V
Sbjct: 13 MKVSEFDYELPPELIAQEPVEPRDASRLMVLHRKTQR---IEHRIFREIIEYLEPGDLLV 69

Query: 61 FNNTKVI 67
           N +KVI
Sbjct: 70 LNVSKVI 76

 Score = 76.8 bits (189), Expect = 4e-15
 Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 13/116 (11%)

Query: 67  ITAQLNGVRFCHINRREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQDGQSRL 126
           + A+L G +         ++   L  + + + W   A+P+K +KKG ++ F    G  RL
Sbjct: 1   LPARLFGTK----EDTGAKVELLLLKQETGDKWETLAKPAKRVKKGTVVTF----GDGRL 52

Query: 127 EATVIDKWNTGEILLVFSISGIELERQISLVGTIPLPPYIARKRPIDARDYVDYQT 182
           +A   ++   G   + F   GI  E  +  +G +PLPPYI         D   YQT
Sbjct: 53  KAICTEELEHGGRKMEFQYDGIFYEV-LESLGEMPLPPYIKE----QLDDKERYQT 103

 Score = 73.3 bits (180), Expect = 4e-14
 Identities = 29/114 (25%), Positives = 42/114 (36%), Gaps = 18/114 (15%)

Query: 69  AQLNGVRFCHINRREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQDGQSRLEA 128
           A+L   +     +    I   L  R+    W    RP + +KKG  L          L A
Sbjct: 2   ARLYARK-----KTGASIEILLIERLEEGIWKCLVRPGQKVKKGTELVIDED-----LSA 51

Query: 129 TVIDKWNTGEILLVFSISGIELERQISLVGTIPLPPYIARKRPIDARDYVDYQT 182
             + +   G  +L F      L  +    G  PLPPYI  + P++      YQT
Sbjct: 52  VCLGRGEDGTRILKFQPQDDRLIFEK---GRTPLPPYIKNEVPLE-----RYQT 97

Probab=100.00  E-value=0  Score=1017.51  Aligned_cols=341  Identities=44%  Similarity=0.672  Sum_probs=319.9

Q ss_pred             CCCCCCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEEHHHHHHHCCCCCEEEEECCCEEEEEEEEEEECCCC
Q ss_conf             98633588889778616998781203135663788875315310143478726988799994795688899876404677
Q gi|254780180|r    1 MMVKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIVFNNTKVITAQLNGVRFCHIN   80 (360)
Q Consensus         1 M~lsdfDy~LP~elIAq~P~~~Rd~SRLLV~~r~~~~~~~i~h~~F~dl~~~L~~gDLLV~NnTKVipARL~g~k~~~~~   80 (360)
                      |++|||||+||+|+|||+|+++||+|||||++|+++.  .|+|+.|+||++||+||||||||||||+||||+|+|     
T Consensus         2 m~ls~fdf~LP~elIAq~P~~~Rd~sRLLVl~r~~g~--~i~h~~F~dl~~~L~~GDlLV~NdTkVipARL~g~k-----   74 (345)
T 1wdi_A            2 EGLEAYDYHLPPEQIAQEGVEPRDMARLMVVYREGPF--RVAHKRVRDLPEFLRPGDVLVFNESKVIPARLLARK-----   74 (345)
T ss_dssp             CGGGGGCCCCCGGGBCSSCCSSGGGSEEEEECSSSSC--CEEEEEGGGHHHHCCTTCEEEEEEEEECCEEEEEEC-----
T ss_pred             CCHHHCCCCCCHHHHCCCCCCCCCCCEEEEEECCCCC--EEEECCHHHHHHHCCCCCEEEEECCEEEEEEEEEEE-----
T ss_conf             9756769998959976899998611138999889998--576331623676479998999989989788999770-----


Q ss_pred             CCCCEEEEEEECCCCCCCHHHHHHCCCCCCCCCEEEECCCCCCC---CEEEEEEECCCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf             77650589981124866101122115643698579970578874---069999603557724999726786300025442
Q gi|254780180|r   81 RREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQDGQS---RLEATVIDKWNTGEILLVFSISGIELERQISLV  157 (360)
Q Consensus        81 ~~g~~ieill~~~~~~~~w~~l~kp~kklk~G~~l~~~~~~~~~---~l~~~vi~~~~~g~~~i~f~~~~~~~~~~L~~~  157 (360)
                      .+|++||++++++++++.|.|++||+||+|+|+++.|.+.....   .+.++++++.+.+.++..+.   .++.++|+++
T Consensus        75 ~tg~~iEilll~~l~~~~w~~lv~p~kk~k~G~~l~~~~~~~~~~~~~l~a~v~~~~~~~~~~~~~~---~~~~~~l~~~  151 (345)
T 1wdi_A           75 PTGGKVEILLVRERSPGLWEALLGPARKAPPGTRLLLLSPKDLAPVPGLQAEVVAVEEDGVRLLRFQ---GDLVAHLEEV  151 (345)
T ss_dssp             TTSCEEEEEECBCC------CCBCCCSCCCSCEEEEECTTTTSCEEEEEEEECCCSSCC-------------CCEEESCC
T ss_pred             CCCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCEEEEEEEECCCCEEEEEC---CCHHHHHHHH
T ss_conf             6897089998414576135421210567898988996377532212673799999706872798612---3168898875


Q ss_pred             HCCCCCHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCC
Q ss_conf             03578522212345652114331013456757400555688789999999997215530378731656657887410135
Q gi|254780180|r  158 GTIPLPPYIARKRPIDARDYVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDD  237 (360)
Q Consensus       158 G~iPLPPYI~r~r~~~~~D~~~YQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~  237 (360)
                      |+|||||||+|     +.|.+|||||||+++|||||||||||||++||++|++|||++++||||||+|||+||+ +++++
T Consensus       152 G~~PLPpYI~r-----~~d~e~YQTVyA~~~GsVAAPTAGLHFt~~ll~~l~~kGv~~a~iTLHVG~GTF~pv~-~di~~  225 (345)
T 1wdi_A          152 GEVPLPPYIKA-----KIPMERYQTVYARRPGSVAAPTAGLHFTPELLERLREMGVELRFLTLHVGPGTFRPVK-GDPEK  225 (345)
T ss_dssp             CSCC------------------------------CCCCGGGGCCHHHHHHHHHTTCEEEEEEEEESGGGCCC--------
T ss_pred             CCCCCCCHHCC-----CCHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCCC-CCCCC
T ss_conf             47998810202-----4225667778616898552566877778999999997415056799962244446533-52235


Q ss_pred             CCCCCHHEEECHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCEEEEEEEECCCCCH
Q ss_conf             66770007785999999998753798099962878998999985289846888722366574096114312552775545
Q gi|254780180|r  238 HIMHSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIFITPGYRFRAVDILMSNFHLPK  317 (360)
Q Consensus       238 h~mH~E~~~i~~~~~~~I~~ak~~g~rIiAVGTT~~R~LEs~~~~~~~~~~~~g~T~lfI~Pg~~f~~vd~LiTNFH~P~  317 (360)
                      |+||+|||+||++|+++||+||++|||||||||||||||||+++.+|.+++++|||||||+|||+|++||+||||||+||
T Consensus       226 H~mh~E~~~i~~~ta~~i~~ak~~G~RviAVGTT~vRaLEsaa~~~g~l~~~~G~T~lfI~Pgy~fkvvD~LiTNFHlP~  305 (345)
T 1wdi_A          226 HEMHAEPYAIPEEVAEAVNRAKAEGRRVVAVGTTVVRALESAYREGVGVVAGEGETRLFIRPPYTFKVVDALFTNFHLPR  305 (345)
T ss_dssp             --CCCEEEEECHHHHHHHHHHHHTTCCEEEESHHHHHHHHHTEETTTEECCEEEEECCCCCSSCCCSSCSEEEEECCCTT
T ss_pred             CCCCCEEEEECHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHCCCCCCCCCCEECEEECCCCCCCCCCEEEECCCCCC
T ss_conf             78776599982999999999997399489984689999999997289866778302459649997748187455684780


Q ss_pred             HHHHHHHHHHHCHHHHHHHHHHHHHCCCEEECCCCHHHCC
Q ss_conf             7899999987198999999999998698261101022233
Q gi|254780180|r  318 STLLMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLLF  357 (360)
Q Consensus       318 Stll~Lv~Af~G~~~~~~~Y~~Ai~~~yrF~syGDamLi~  357 (360)
                      ||||||||||+|+++|+++|++||+++||||||||||||+
T Consensus       306 STllmLvsAFaG~e~~~~aY~~Ai~~~YrF~SyGDamLIl  345 (345)
T 1wdi_A          306 STLLMLVAAFLGRERTLEAYRLAVAEGYRFYSLGDAMLIL  345 (345)
T ss_dssp             CHHHHHHHHHHCHHHHHHHHHHHHHTTCCBSTTSCEEEEC
T ss_pred             CHHHHHHHHHCCHHHHHHHHHHHHHCCCCEECCCHHHEEC
T ss_conf             2999999995896999999999998798433313320219

Probab=100.00  E-value=0  Score=769.15  Aligned_cols=238  Identities=49%  Similarity=0.815  Sum_probs=231.8

Q ss_pred             CCCCCCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEEHHHHHHHCCCCCEEEEECCCEEEEEEEEEEECCCC
Q ss_conf             98633588889778616998781203135663788875315310143478726988799994795688899876404677
Q gi|254780180|r    1 MMVKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIVFNNTKVITAQLNGVRFCHIN   80 (360)
Q Consensus         1 M~lsdfDy~LP~elIAq~P~~~Rd~SRLLV~~r~~~~~~~i~h~~F~dl~~~L~~gDLLV~NnTKVipARL~g~k~~~~~   80 (360)
                      |++|+|||+||+|||||+|+++||+|||||++|+++   +|+|..|+||++||+||||||||||||              
T Consensus         5 m~ls~fdf~LP~elIAq~P~~~Rd~sRLlVl~r~~g---~i~h~~F~dl~~~l~~gDllV~NdTkV--------------   67 (243)
T 1yy3_A            5 SKVDLFDFELPERLIAQVPLEQRDASRLMVLDKHTG---ELTDSSFKHIISFFNEGDCLVLNNTRV--------------   67 (243)
T ss_dssp             ---CCSCCCCCTTTBCSSCCTTSTTSBEEECCTTTC---CCCCCBTTGGGGGCCTTEEEEECCCCS--------------
T ss_pred             CCHHHCCCCCCHHHHCCCCCCCCCCCEEEEEECCCC---CEEEEEHHHHHHHCCCCCEEEEECCEE--------------
T ss_conf             724114889994897589999975242778988999---167765633686479998999989998--------------


Q ss_pred             CCCCEEEEEEECCCCCCCHHHHHHCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             77650589981124866101122115643698579970578874069999603557724999726786300025442035
Q gi|254780180|r   81 RREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQDGQSRLEATVIDKWNTGEILLVFSISGIELERQISLVGTI  160 (360)
Q Consensus        81 ~~g~~ieill~~~~~~~~w~~l~kp~kklk~G~~l~~~~~~~~~~l~~~vi~~~~~g~~~i~f~~~~~~~~~~L~~~G~i  160 (360)
                                                                                                      
T Consensus        68 --------------------------------------------------------------------------------   67 (243)
T 1yy3_A           68 --------------------------------------------------------------------------------   67 (243)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
T ss_conf             --------------------------------------------------------------------------------


Q ss_pred             CCCHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             78522212345652114331013456757400555688789999999997215530378731656657887410135667
Q gi|254780180|r  161 PLPPYIARKRPIDARDYVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIM  240 (360)
Q Consensus       161 PLPPYI~r~r~~~~~D~~~YQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~m  240 (360)
                                            |||+++|||||||||||||++||++|++|||++++||||||+|||+||++|++++|+|
T Consensus        68 ----------------------VyAk~~GSVAAPTAGLHFt~~ll~~l~~kGv~~a~vTLHvG~gTF~pv~~e~i~~H~m  125 (243)
T 1yy3_A           68 ----------------------VYSKEIGSAAAPTAGLHFTEEILQQLKDKGVQIEFITLHVGLGTFRPVSADEVEEHNM  125 (243)
T ss_dssp             ------------------------------CCCCSSTTCCCHHHHHHHHHHTEEEEECEEESGGGGGC-----------C
T ss_pred             ----------------------HHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCC
T ss_conf             ----------------------9730689832885655679999999998598599999863455445655543345788


Q ss_pred             CCHHEEECHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHC-CCCCCCCCCCCCEEECCCCCCEEEEEEEECCCCCHHH
Q ss_conf             700077859999999987537980999628789989999852-8984688872236657409611431255277554578
Q gi|254780180|r  241 HSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTE-DGIINPWSGFTNIFITPGYRFRAVDILMSNFHLPKST  319 (360)
Q Consensus       241 H~E~~~i~~~~~~~I~~ak~~g~rIiAVGTT~~R~LEs~~~~-~~~~~~~~g~T~lfI~Pg~~f~~vd~LiTNFH~P~St  319 (360)
                      |+|||+||++|+++||+||++|+|||||||||+|+|||+++. +|.+++++|||||||+|||+|++||+||||||+||||
T Consensus       126 h~E~~~i~~~ta~~In~ak~~g~RiiAVGTT~~RaLEsa~~~~~g~~~~~~G~T~lfI~Pgy~f~vvD~LiTNFH~P~St  205 (243)
T 1yy3_A          126 HAEFYQMSEETAAALNKVRENGGRIISVGTTSTRTLETIAGEHDGQFKASSGWTSIFIYPGYEFKAIDGMITNFHLPKSS  205 (243)
T ss_dssp             CCEEEEECHHHHHHHHHHHHTTCCEEEECTTTHHHHHHHHHTTTSCCCCEEEEECCCCCTTCCCSSCSEEEEECCCTTSS
T ss_pred             CCEEEEECHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCEECCCCCCCH
T ss_conf             87389964999999999997499199970368999999986249960678863196977989776808765367277029


Q ss_pred             HHHHHHHHHCHHHHHHHHHHHHHCCCEEECCCCHHHCC
Q ss_conf             99999987198999999999998698261101022233
Q gi|254780180|r  320 LLMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLLF  357 (360)
Q Consensus       320 ll~Lv~Af~G~~~~~~~Y~~Ai~~~yrF~syGDamLi~  357 (360)
                      ||||||||+|+++|+++|++||+++||||||||||||+
T Consensus       206 llmLvsAFaG~~~~~~aY~~Ai~~~YRF~syGDamLIl  243 (243)
T 1yy3_A          206 LIMLVSALAGRENILRAYNHAVEEEYRFFSFGDAMLII  243 (243)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHTTCCBSSSSCEEEC-
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHCCCCEECCCHHHEEC
T ss_conf             99999995897999999999998798502523210219

Probab=100.00  E-value=0  Score=761.60  Aligned_cols=238  Identities=47%  Similarity=0.782  Sum_probs=231.5

Q ss_pred             CCCCCCCCCCCHHHHCCCCCCCCCCCEEEEECCCCCCCCEEEEEEHHHHHHHCCCCCEEEEECCCEEEEEEEEEEECCCC
Q ss_conf             98633588889778616998781203135663788875315310143478726988799994795688899876404677
Q gi|254780180|r    1 MMVKEFDFDLPPSRIALRPVFPRDSARLMVVHPNLSCPLVISDHLVSDLPAFLNSNDAIVFNNTKVITAQLNGVRFCHIN   80 (360)
Q Consensus         1 M~lsdfDy~LP~elIAq~P~~~Rd~SRLLV~~r~~~~~~~i~h~~F~dl~~~L~~gDLLV~NnTKVipARL~g~k~~~~~   80 (360)
                      |++|+|||+||+|||||+|+++||+|||||+||+++   +|.|+.|+||++||+|||||||||||||             
T Consensus        13 m~ls~fdf~LP~elIAq~P~~~Rd~sRLlVldr~~g---~i~h~~F~dl~~~l~~gDllV~NdTkVi-------------   76 (250)
T 1vky_A           13 MKVSEFDYELPPELIAQEPVEPRDASRLMVLHRKTQ---RIEHRIFREIIEYLEPGDLLVLNVSKVI-------------   76 (250)
T ss_dssp             ---CTTCCCCCGGGBCSSCCSSGGGSEEEEEETTTT---EEEEEEGGGGGGGCCTTCEEEEEEEECC-------------
T ss_pred             EEHHHCCCCCCHHHHCCCCCCCCCCCEEEEEECCCC---CEEEEEHHHHHHHCCCCCEEEEECCEEE-------------
T ss_conf             488783989895997689999964044889988999---2787567656864799989999799998-------------


Q ss_pred             CCCCEEEEEEECCCCCCCHHHHHHCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             77650589981124866101122115643698579970578874069999603557724999726786300025442035
Q gi|254780180|r   81 RREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQDGQSRLEATVIDKWNTGEILLVFSISGIELERQISLVGTI  160 (360)
Q Consensus        81 ~~g~~ieill~~~~~~~~w~~l~kp~kklk~G~~l~~~~~~~~~~l~~~vi~~~~~g~~~i~f~~~~~~~~~~L~~~G~i  160 (360)
                                                                                                      
T Consensus        77 --------------------------------------------------------------------------------   76 (250)
T 1vky_A           77 --------------------------------------------------------------------------------   76 (250)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
T ss_conf             --------------------------------------------------------------------------------


Q ss_pred             CCCHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             78522212345652114331013456757400555688789999999997215530378731656657887410135667
Q gi|254780180|r  161 PLPPYIARKRPIDARDYVDYQTTYAKIQGSVAAPTAGLHFTSNLLSRLISIGIKVYFVTLHVGAGTFMPVKVEDTDDHIM  240 (360)
Q Consensus       161 PLPPYI~r~r~~~~~D~~~YQTVyA~~~GSVAAPTAGLHFt~~ll~~L~~kGi~~~~iTLHVG~GTF~Pi~~~~i~~h~m  240 (360)
                                            |||+++|||||||||||||++||++|++|||++++||||||+|||+||++|+|++|+|
T Consensus        77 ----------------------VyAk~~GsvAAPTAGLHFt~~ll~~l~~kGv~~~~iTLHvG~gTF~pv~~e~i~~H~m  134 (250)
T 1vky_A           77 ----------------------VYAKEEGSVAAPTAGLHFTPELIEKLKKKGVQFAEVVLHVGIGTFRPVKVEEVEKHKM  134 (250)
T ss_dssp             ----------------------------------CGGGGCCHHHHHHHHHHTCEEEEEEEEC------------------
T ss_pred             ----------------------HHHHHCCCEECCCCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCC
T ss_conf             ----------------------9764258543676886778999999998499268899997355565765542356787


Q ss_pred             CCHHEEECHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCEEEEEEEECCCCCHHHH
Q ss_conf             70007785999999998753798099962878998999985289846888722366574096114312552775545789
Q gi|254780180|r  241 HSEIGFIDAPTAQALNSVKSRGGRIVSVGTTSLRLLETATTEDGIINPWSGFTNIFITPGYRFRAVDILMSNFHLPKSTL  320 (360)
Q Consensus       241 H~E~~~i~~~~~~~I~~ak~~g~rIiAVGTT~~R~LEs~~~~~~~~~~~~g~T~lfI~Pg~~f~~vd~LiTNFH~P~Stl  320 (360)
                      |+|||+||++|+++||+||++|+|||||||||+|||||+++ +|.++++.|||||||+|||+|++||+||||||+|+|||
T Consensus       135 h~E~~~I~~~ta~~i~~ak~~g~riiAVGTT~~RaLEsa~~-~g~~~~~~G~T~lfI~Pgy~fkvvd~LiTNFH~P~STL  213 (250)
T 1vky_A          135 HEEFYQVPKETVRKLRETRERGNRIVAVGTTTVRTLETIAR-LPEQEEYVGKTDLFIYPPFEFKLVDALVTNFHLPRSTL  213 (250)
T ss_dssp             CCCEEEECHHHHHHHHHHHHHTCCEEEESHHHHHHHHHHTT-SCCCSSEEECCCCCCCSSCCCSSCSEEEEECCCTTCHH
T ss_pred             CCEEEEECHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHH-HCCCCCCCCCCCEEECCCCCCCEECCCEECCCCCCCHH
T ss_conf             77299982999999999997199589984589999999987-42577767752469899998718186554683770399


Q ss_pred             HHHHHHHHCHHHHHHHHHHHHHCCCEEECCCCHHHCC
Q ss_conf             9999987198999999999998698261101022233
Q gi|254780180|r  321 LMLVSAFCGIEETKKMYQHAISHAYRFYSYGDTSLLF  357 (360)
Q Consensus       321 l~Lv~Af~G~~~~~~~Y~~Ai~~~yrF~syGDamLi~  357 (360)
                      |||||||+|+++++++|++||+++||||||||||||+
T Consensus       214 lmLvsAFag~~~~~~aY~~Ai~~~YrF~syGDamLIl  250 (250)
T 1vky_A          214 LMLVAAFAGKDFVMEAYREAVKRRYRFFSFGDAMLIL  250 (250)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHTTCCBSTTSCEEEEC
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHCCCCEECCCHHHEEC
T ss_conf             9999984896999999999998799613424120219

Probab=99.90  E-value=1.3e-23  Score=190.25  Aligned_cols=103  Identities=28%  Similarity=0.503  Sum_probs=92.1

Q ss_pred             EEEEEEEEEECCCCCCCCEEEEEEECCCCCCCHHHHHHCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCEEEEECCC
Q ss_conf             88899876404677776505899811248661011221156436985799705788740699996035577249997267
Q gi|254780180|r   67 ITAQLNGVRFCHINRREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQDGQSRLEATVIDKWNTGEILLVFSIS  146 (360)
Q Consensus        67 ipARL~g~k~~~~~~~g~~ieill~~~~~~~~w~~l~kp~kklk~G~~l~~~~~~~~~~l~~~vi~~~~~g~~~i~f~~~  146 (360)
                      |||||+|.|.    ++|++||++++++++++.|.||+||+||+|+|++|.|.+.    .+.++|+++.+.|.++++|+.+
T Consensus         1 ipARL~g~k~----~tG~~iEilll~~l~~~~w~~lvrp~kklk~G~~l~~~~~----~l~a~v~~~~~~g~~~~~f~~~   72 (103)
T 1yy3_A            1 LPARLFGTKE----DTGAKVELLLLKQETGDKWETLAKPAKRVKKGTVVTFGDG----RLKAICTEELEHGGRKMEFQYD   72 (103)
T ss_dssp             CCEEEEEEES----SSSCCEEEEEEEECSTTEEEEEETTGGGSCTTCEEEETTS----SSEEEEEEECTTSCEEEEEECS
T ss_pred             EEEEEEEEEC----CCCCEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCC----CEEEEEEEEECCCCEEEEECCC
T ss_conf             8568997734----7884689987402468658999604555553129995377----2489999981588379997378


Q ss_pred             CCCHHHHHHHHHCCCCCHHHCCCCCCCCCCHHHHCC
Q ss_conf             863000254420357852221234565211433101
Q gi|254780180|r  147 GIELERQISLVGTIPLPPYIARKRPIDARDYVDYQT  182 (360)
Q Consensus       147 ~~~~~~~L~~~G~iPLPPYI~r~r~~~~~D~~~YQT  182 (360)
                      + ++.++|+++|+|||||||+|  +  ++|.+||||
T Consensus        73 ~-~~~~~l~~~G~iPLPPYI~R--~--~~D~erYQT  103 (103)
T 1yy3_A           73 G-IFYEVLESLGEMPLPPYIKE--Q--LDDKERYQT  103 (103)
T ss_dssp             S-CHHHHHHHHHTCCCCHHHHT--T--SSSCC----
T ss_pred             C-CHHHHHHHCCCCCCCCCCCC--C--CCHHHHHHH
T ss_conf             8-47999997189999933155--6--114999999

Probab=99.87  E-value=1.4e-22  Score=182.84  Aligned_cols=97  Identities=30%  Similarity=0.442  Sum_probs=88.2

Q ss_pred             EEEEEEEEECCCCCCCCEEEEEEECCCCCCCHHHHHHCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCEEEEECCCC
Q ss_conf             88998764046777765058998112486610112211564369857997057887406999960355772499972678
Q gi|254780180|r   68 TAQLNGVRFCHINRREKEISCTLHMRVSPNSWSVYARPSKVIKKGDILHFFSQDGQSRLEATVIDKWNTGEILLVFSISG  147 (360)
Q Consensus        68 pARL~g~k~~~~~~~g~~ieill~~~~~~~~w~~l~kp~kklk~G~~l~~~~~~~~~~l~~~vi~~~~~g~~~i~f~~~~  147 (360)
                      ||||+|+|     .+|++||++++++++++.|.||+||+|++|+|++|.|.+     .++++|+++.++|.++++|+.+ 
T Consensus         1 PARL~g~k-----~tG~~vEilll~~l~~~~w~~l~k~~k~~k~G~~l~~~~-----~~~~~v~~~~~~g~~~v~f~~~-   69 (97)
T 1vky_A            1 PARLYARK-----KTGASIEILLIERLEEGIWKCLVRPGQKVKKGTELVIDE-----DLSAVCLGRGEDGTRILKFQPQ-   69 (97)
T ss_dssp             SCEEEEBC--------CCEEEEEEEEEETTEEEEEEESCTTCCTTCEEEEET-----TEEEEEEEECTTSCEEEEEESC-
T ss_pred             EEEEEEEE-----CCCCCEEEEEEEECCCCEEEEEECCCCCCCCCCEEEECC-----CCCEEEEEECCCCEEEEECCCC-
T ss_conf             88999981-----334642047776426876999961665677886798527-----7406999861541367731675-


Q ss_pred             CCHHHHHHHHHCCCCCHHHCCCCCCCCCCHHHHCC
Q ss_conf             63000254420357852221234565211433101
Q gi|254780180|r  148 IELERQISLVGTIPLPPYIARKRPIDARDYVDYQT  182 (360)
Q Consensus       148 ~~~~~~L~~~G~iPLPPYI~r~r~~~~~D~~~YQT  182 (360)
                        ++++|+++|+|||||||+|     +.|.+||||
T Consensus        70 --~~~~le~~G~iPLPPYI~r-----~~D~erYQT   97 (97)
T 1vky_A           70 --DDRLIFEKGRTPLPPYIKN-----EVPLERYQT   97 (97)
T ss_dssp             --CHHHHHHHC------------------------
T ss_pred             --CHHHHHHCCCCCCCCHHCC-----CCHHHHHHH
T ss_conf             --3577986599888932214-----315999999