254780187
30S ribosomal protein S4
GeneID in NCBI database: | 8209167 | Locus tag: | CLIBASIA_00350 |
Protein GI in NCBI database: | 254780187 | Protein Accession: | YP_003064600.1 |
Gene range: | -(72701, 73321) | Protein Length: | 206aa |
Gene description: | 30S ribosomal protein S4 | ||
COG prediction: | none | ||
KEGG prediction: | rpsD; 30S ribosomal protein S4; K02986 small subunit ribosomal protein S4 | ||
SEED prediction: | SSU ribosomal protein S4p (S9e) | ||
Pathway involved in KEGG: | Ribosome [PATH:las03010] | ||
Subsystem involved in SEED: | Ribosome SSU bacterial | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 206 | 30S ribosomal protein S4 [Candidatus Liberibacter asiat | |||
315122617 | 206 | 30S ribosomal protein S4 [Candidatus Liberibacter solan | 1 | 1e-103 | |
227822183 | 205 | 30S ribosomal protein S4 [Sinorhizobium fredii NGR234] | 1 | 1e-89 | |
15965540 | 205 | 30S ribosomal protein S4 [Sinorhizobium meliloti 1021] | 1 | 1e-89 | |
150396726 | 205 | 30S ribosomal protein S4 [Sinorhizobium medicae WSM419] | 1 | 4e-89 | |
190891998 | 205 | 30S ribosomal protein S4 [Rhizobium etli CIAT 652] Leng | 1 | 6e-89 | |
222148432 | 205 | 30S ribosomal protein S4 [Agrobacterium vitis S4] Lengt | 1 | 6e-89 | |
15889161 | 205 | 30S ribosomal protein S4 [Agrobacterium tumefaciens str | 1 | 1e-88 | |
209549541 | 205 | 30S ribosomal protein S4 [Rhizobium leguminosarum bv. t | 1 | 2e-88 | |
116252370 | 205 | 30S ribosomal protein S4 [Rhizobium leguminosarum bv. v | 1 | 3e-88 | |
241204876 | 205 | 30S ribosomal protein S4 [Rhizobium leguminosarum bv. t | 1 | 4e-88 |
>gi|315122617|ref|YP_004063106.1| 30S ribosomal protein S4 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 206 | Back alignment and organism information |
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Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 180/206 (87%), Positives = 192/206 (93%) Query: 1 MSKRESSKHKIDRRIGENLWGRPKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 MSKRESSKHKIDRRI ENLWGRPKSPVN RSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK Sbjct: 1 MSKRESSKHKIDRRISENLWGRPKSPVNVRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKK 60 Query: 61 YYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRH 120 YYGD+ EK+FRSIFKEADR +GDTS NLISFLESRLDTIVYRAKFVPT+FAARQFVNHRH Sbjct: 61 YYGDVGEKQFRSIFKEADRCKGDTSQNLISFLESRLDTIVYRAKFVPTVFAARQFVNHRH 120 Query: 121 VLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAERDVPEYISVNHDNMVATFV 180 VLVNG SVNIGSYRCK GDVIEVK KSK+L SVL + QL ERDVPEYIS +H+NMVATFV Sbjct: 121 VLVNGFSVNIGSYRCKAGDVIEVKSKSKKLTSVLGSVQLPERDVPEYISADHENMVATFV 180 Query: 181 RIPSSLKDVPYPVIMQPNLVVEFYSR 206 +IP+SL +VPYPVIM+PNLVVEFYSR Sbjct: 181 KIPTSLSEVPYPVIMEPNLVVEFYSR 206 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|227822183|ref|YP_002826154.1| 30S ribosomal protein S4 [Sinorhizobium fredii NGR234] Length = 205 | Back alignment and organism information |
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>gi|15965540|ref|NP_385893.1| 30S ribosomal protein S4 [Sinorhizobium meliloti 1021] Length = 205 | Back alignment and organism information |
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>gi|150396726|ref|YP_001327193.1| 30S ribosomal protein S4 [Sinorhizobium medicae WSM419] Length = 205 | Back alignment and organism information |
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>gi|190891998|ref|YP_001978540.1| 30S ribosomal protein S4 [Rhizobium etli CIAT 652] Length = 205 | Back alignment and organism information |
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>gi|222148432|ref|YP_002549389.1| 30S ribosomal protein S4 [Agrobacterium vitis S4] Length = 205 | Back alignment and organism information |
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>gi|15889161|ref|NP_354842.1| 30S ribosomal protein S4 [Agrobacterium tumefaciens str. C58] Length = 205 | Back alignment and organism information |
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>gi|209549541|ref|YP_002281458.1| 30S ribosomal protein S4 [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 205 | Back alignment and organism information |
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>gi|116252370|ref|YP_768208.1| 30S ribosomal protein S4 [Rhizobium leguminosarum bv. viciae 3841] Length = 205 | Back alignment and organism information |
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>gi|241204876|ref|YP_002975972.1| 30S ribosomal protein S4 [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 205 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 206 | 30S ribosomal protein S4 [Candidatus Liberibacter asiat | ||
PRK05327 | 203 | PRK05327, rpsD, 30S ribosomal protein S4; Validated | 1e-79 | |
TIGR01017 | 200 | TIGR01017, rpsD_bact, ribosomal protein S4, bacterial/o | 1e-57 | |
CHL00113 | 201 | CHL00113, rps4, ribosomal protein S4; Reviewed | 1e-36 | |
COG0522 | 205 | COG0522, RpsD, Ribosomal protein S4 and related protein | 6e-49 | |
pfam01479 | 48 | pfam01479, S4, S4 domain | 2e-12 | |
cd00165 | 70 | cd00165, S4, S4/Hsp/ tRNA synthetase RNA-binding domain | 4e-12 | |
smart00363 | 60 | smart00363, S4, S4 RNA-binding domain | 6e-12 | |
PRK04051 | 177 | PRK04051, rps4p, 30S ribosomal protein S4P; Validated | 1e-08 | |
KOG3301 | 183 | KOG3301, KOG3301, KOG3301, Ribosomal protein S4 [Transl | 3e-07 | |
TIGR01018 | 162 | TIGR01018, rpsD_arch, ribosomal protein S4(archaeal typ | 4e-07 | |
PLN00189 | 194 | PLN00189, PLN00189, 40S ribosomal protein S9; Provision | 9e-05 | |
PTZ00155 | 181 | PTZ00155, PTZ00155, 40S ribosomal protein S9; Provision | 0.002 | |
pfam00163 | 94 | pfam00163, Ribosomal_S4, Ribosomal protein S4/S9 N-term | 9e-08 |
>gnl|CDD|180018 PRK05327, rpsD, 30S ribosomal protein S4; Validated | Back alignment and domain information |
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>gnl|CDD|130089 TIGR01017, rpsD_bact, ribosomal protein S4, bacterial/organelle type | Back alignment and domain information |
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>gnl|CDD|177038 CHL00113, rps4, ribosomal protein S4; Reviewed | Back alignment and domain information |
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>gnl|CDD|30868 COG0522, RpsD, Ribosomal protein S4 and related proteins [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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>gnl|CDD|144902 pfam01479, S4, S4 domain | Back alignment and domain information |
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>gnl|CDD|29105 cd00165, S4, S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes | Back alignment and domain information |
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>gnl|CDD|128657 smart00363, S4, S4 RNA-binding domain | Back alignment and domain information |
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>gnl|CDD|179730 PRK04051, rps4p, 30S ribosomal protein S4P; Validated | Back alignment and domain information |
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>gnl|CDD|38511 KOG3301, KOG3301, KOG3301, Ribosomal protein S4 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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>gnl|CDD|130090 TIGR01018, rpsD_arch, ribosomal protein S4(archaeal type)/S9(eukaryote cytosolic type) | Back alignment and domain information |
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>gnl|CDD|177783 PLN00189, PLN00189, 40S ribosomal protein S9; Provisional | Back alignment and domain information |
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>gnl|CDD|185484 PTZ00155, PTZ00155, 40S ribosomal protein S9; Provisional | Back alignment and domain information |
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>gnl|CDD|143931 pfam00163, Ribosomal_S4, Ribosomal protein S4/S9 N-terminal domain | Back alignment and domain information |
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Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 206 | 30S ribosomal protein S4 [Candidatus Liberibacter asiat | ||
TIGR01017 | 217 | rpsD_bact ribosomal protein S4; InterPro: IPR005709 Rib | 100.0 | |
PRK05327 | 201 | rpsD 30S ribosomal protein S4; Validated | 100.0 | |
PRK12565 | 197 | 30S ribosomal protein S4; Provisional | 100.0 | |
CHL00113 | 201 | rps4 ribosomal protein S4; Reviewed | 100.0 | |
COG0522 | 205 | RpsD Ribosomal protein S4 and related proteins [Transla | 100.0 | |
pfam00163 | 94 | Ribosomal_S4 Ribosomal protein S4/S9 N-terminal domain. | 99.95 | |
KOG3301 | 183 | consensus | 99.82 | |
TIGR01018 | 170 | rpsD_arch ribosomal protein S4; InterPro: IPR005710 Rib | 99.72 | |
PRK04051 | 177 | rps4p 30S ribosomal protein S4; Validated | 99.67 | |
PTZ00155 | 188 | 40S ribosomal protein S9; Provisional | 99.59 | |
smart00363 | 60 | S4 S4 RNA-binding domain. | 99.22 | |
pfam01479 | 48 | S4 S4 domain. The S4 domain is a small domain consistin | 99.21 | |
cd00165 | 70 | S4 S4/Hsp/ tRNA synthetase RNA-binding domain; The doma | 99.13 | |
COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal struct | 98.49 | |
COG1188 | 100 | Ribosome-associated heat shock protein implicated in th | 98.38 | |
TIGR00478 | 240 | tly hemolysin A; InterPro: IPR004538 Hemolysins are exo | 98.34 | |
TIGR03069 | 257 | PS_II_S4 photosystem II S4 domain protein. Members of t | 98.31 | |
PRK10348 | 133 | ribosome-associated heat shock protein Hsp15; Provision | 98.19 | |
PRK10839 | 231 | 16S rRNA pseudouridylate synthase A; Provisional | 98.18 | |
COG2302 | 257 | Uncharacterized conserved protein, contains S4-like dom | 98.11 | |
PRK11180 | 325 | rluD 23S rRNA pseudouridine synthase D; Provisional | 97.76 | |
PRK11025 | 317 | 23S rRNA pseudouridylate synthase C; Provisional | 97.6 | |
KOG4655 | 181 | consensus | 97.56 | |
COG0564 | 289 | RluA Pseudouridylate synthases, 23S RNA-specific [Trans | 97.52 | |
PRK10475 | 290 | 23S rRNA pseudouridine synthase F; Provisional | 97.49 | |
COG1187 | 248 | RsuA 16S rRNA uridine-516 pseudouridylate synthase and | 97.08 | |
PRK10700 | 291 | 23S rRNA pseudouridylate synthase B; Provisional | 96.64 | |
PRK11507 | 70 | hypothetical protein; Provisional | 96.52 | |
TIGR02988 | 60 | YaaA_near_RecF S4 domain protein YaaA; InterPro: IPR014 | 96.44 | |
PRK04313 | 237 | 30S ribosomal protein S4e; Validated | 96.37 | |
PTZ00223 | 273 | 40S ribosomal protein S4; Provisional | 96.37 | |
PTZ00118 | 262 | 40S ribosomal protein S4; Provisional | 96.21 | |
COG2501 | 73 | S4-like RNA binding protein [Replication, recombination | 96.16 | |
COG1471 | 241 | RPS4A Ribosomal protein S4E [Translation, ribosomal str | 95.42 | |
PRK13354 | 405 | tyrosyl-tRNA synthetase; Provisional | 96.7 | |
PRK05912 | 402 | tyrosyl-tRNA synthetase; Validated | 95.73 | |
COG0162 | 401 | TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal st | 93.92 | |
TIGR00005 | 337 | rluA_subfam pseudouridine synthase, RluA family; InterP | 95.82 |
>TIGR01017 rpsD_bact ribosomal protein S4; InterPro: IPR005709 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
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>PRK05327 rpsD 30S ribosomal protein S4; Validated | Back alignment and domain information |
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>PRK12565 30S ribosomal protein S4; Provisional | Back alignment and domain information |
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>CHL00113 rps4 ribosomal protein S4; Reviewed | Back alignment and domain information |
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>COG0522 RpsD Ribosomal protein S4 and related proteins [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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>pfam00163 Ribosomal_S4 Ribosomal protein S4/S9 N-terminal domain | Back alignment and domain information |
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>KOG3301 consensus | Back alignment and domain information |
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>TIGR01018 rpsD_arch ribosomal protein S4; InterPro: IPR005710 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
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>PRK04051 rps4p 30S ribosomal protein S4; Validated | Back alignment and domain information |
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>PTZ00155 40S ribosomal protein S9; Provisional | Back alignment and domain information |
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>smart00363 S4 S4 RNA-binding domain | Back alignment and domain information |
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>pfam01479 S4 S4 domain | Back alignment and domain information |
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>cd00165 S4 S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes | Back alignment and domain information |
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>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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>TIGR00478 tly hemolysin A; InterPro: IPR004538 Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture | Back alignment and domain information |
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>TIGR03069 PS_II_S4 photosystem II S4 domain protein | Back alignment and domain information |
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>PRK10348 ribosome-associated heat shock protein Hsp15; Provisional | Back alignment and domain information |
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>PRK10839 16S rRNA pseudouridylate synthase A; Provisional | Back alignment and domain information |
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>COG2302 Uncharacterized conserved protein, contains S4-like domain [Function unknown] | Back alignment and domain information |
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>PRK11180 rluD 23S rRNA pseudouridine synthase D; Provisional | Back alignment and domain information |
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>PRK11025 23S rRNA pseudouridylate synthase C; Provisional | Back alignment and domain information |
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>KOG4655 consensus | Back alignment and domain information |
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>COG0564 RluA Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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>PRK10475 23S rRNA pseudouridine synthase F; Provisional | Back alignment and domain information |
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>COG1187 RsuA 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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>PRK10700 23S rRNA pseudouridylate synthase B; Provisional | Back alignment and domain information |
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>PRK11507 hypothetical protein; Provisional | Back alignment and domain information |
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>TIGR02988 YaaA_near_RecF S4 domain protein YaaA; InterPro: IPR014330 This small protein has a single S4 domain (IPR002942 from INTERPRO); it is also found in bacterial S4 ribosomal proteins, some pseudouridine synthases and tyrosyl-tRNA synthetases | Back alignment and domain information |
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>PRK04313 30S ribosomal protein S4e; Validated | Back alignment and domain information |
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>PTZ00223 40S ribosomal protein S4; Provisional | Back alignment and domain information |
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>PTZ00118 40S ribosomal protein S4; Provisional | Back alignment and domain information |
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>COG2501 S4-like RNA binding protein [Replication, recombination, and repair] | Back alignment and domain information |
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>COG1471 RPS4A Ribosomal protein S4E [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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>PRK13354 tyrosyl-tRNA synthetase; Provisional | Back alignment and domain information |
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>PRK05912 tyrosyl-tRNA synthetase; Validated | Back alignment and domain information |
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>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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>TIGR00005 rluA_subfam pseudouridine synthase, RluA family; InterPro: IPR006225 This is the RluD subfamily of pseudouridine synthases | Back alignment and domain information |
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Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
Identity | Alignment graph | Length | Definition | E-value |
Target | 206 | 30S ribosomal protein S4 [Candidatus Liberibacter asiat | ||
1vs5_D | 206 | Crystal Structure Of The Bacterial Ribosome From Es | 4e-55 | |
1fka_D | 209 | Structure Of Functionally Activated Small Ribosomal | 9e-55 | |
1fjg_D | 209 | Structure Of The Thermus Thermophilus 30s Ribosomal | 2e-54 | |
1p6g_D | 205 | Real Space Refined Coordinates Of The 30s Subunit F | 6e-54 | |
1i94_D | 208 | Crystal Structures Of The Small Ribosomal Subunit W | 9e-54 | |
2gy9_D | 204 | Structure Of The 30s Subunit Of A Pre-Translocation | 3e-53 | |
3bbn_D | 201 | Homology Model For The Spinach Chloroplast 30s Subu | 2e-47 | |
1qd7_C | 159 | Partial Model For 30s Ribosomal Subunit Length = 15 | 2e-39 |
gi|116666551|pdb|1VS5|D Chain D, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 206 | Back alignment and structure |
Score = 218 bits (555), Expect = 4e-55, Method: Composition-based stats. Identities = 81/211 (38%), Positives = 127/211 (60%), Gaps = 10/211 (4%) Query: 1 MSKRESSKHKIDRRIGENLWGRPK-SPVNTRSY---GPGLHGQRRKSKPSYFGLQLRAKQ 56 M++ K K+ RR G +L+ + ++T+ PG HG RK + S +G+QLR KQ Sbjct: 1 MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGA-RKPRLSDYGVQLREKQ 59 Query: 57 KMKKYYGDISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFV 116 K+++ YG + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T ARQ V Sbjct: 60 KVRRIYGVL-ERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLV 118 Query: 117 NHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNM 175 +H+ ++VNGR VNI SY+ DV+ +++K+K+ + V A +LAE R+ P ++ V+ M Sbjct: 119 SHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKM 178 Query: 176 VATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 TF R P + +L+VE YS+ Sbjct: 179 EGTFKRKPERSD---LSADINEHLIVELYSK 206 |
gi|10120567|pdb|1FKA|D Chain D, Structure Of Functionally Activated Small Ribosomal Subunit At 3.3 A Resolution Length = 209 | Back alignment and structure |
>gi|10835588|pdb|1FJG|D Chain D, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit In Complex With The Antibiotics Streptomycin, Spectinomycin, And Paromomycin Length = 209 | Back alignment and structure |
>gi|33357881|pdb|1P6G|D Chain D, Real Space Refined Coordinates Of The 30s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 205 | Back alignment and structure |
>gi|14278533|pdb|1I94|D Chain D, Crystal Structures Of The Small Ribosomal Subunit With Tetracycline, Edeine And If3 Length = 208 | Back alignment and structure |
>gi|116667413|pdb|2GY9|D Chain D, Structure Of The 30s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 204 | Back alignment and structure |
gi|188036205|pdb|3BBN|D Chain D, Homology Model For The Spinach Chloroplast 30s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome. Length = 201 | Back alignment and structure |
>gi|6137687|pdb|1QD7|C Chain C, Partial Model For 30s Ribosomal Subunit Length = 159 | Back alignment and structure |
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 206 | 30S ribosomal protein S4 [Candidatus Liberibacter asiat | ||
3ofo_D | 205 | 30S ribosomal protein S4; protein biosynthesis, ribosom | 8e-55 | |
3i1m_D | 206 | 30S ribosomal protein S4; ribosome structure, protein-R | 3e-49 | |
2vqe_D | 209 | 30S ribosomal protein S4; tRNA-binding, rRNA-binding, m | 8e-48 | |
3bbn_D | 201 | Ribosomal protein S4; small ribosomal subunit, spinach | 1e-41 | |
1c05_A | 159 | Ribosomal protein S4 delta 41; two subdomains, unique t | 1e-39 | |
3jyv_D | 158 | 40S ribosomal protein S9(A); eukaryotic ribosome, RACK1 | 2e-22 | |
1s1h_D | 179 | 40S ribosomal protein S9-A; 80S ribosome, 40S ribosomal | 1e-16 | |
2cqj_A | 71 | BRMS2, U3 small nucleolar ribonucleoprotein protein IMP | 4e-15 | |
1p9k_A | 79 | ORF, hypothetical protein; alfal motif, RNA-binding pro | 3e-08 | |
1dm9_A | 133 | Hypothetical 15.5 KD protein in MRCA-PCKA intergenic re | 9e-06 | |
2k6p_A | 92 | Uncharacterized protein HP_1423; alpha-L motif, RNA-bin | 8e-05 |
>3ofo_D 30S ribosomal protein S4; protein biosynthesis, ribosomes, RNA, tRNA, transfer, eryThr ketolide, macrolide, antibiotic, EXIT, peptidyl; 3.10A {Escherichia coli} PDB: 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D 2qbf_D 2qbh_D* 2qbj_D* 2qou_D* 2qow_D* 2qoy_D* 2qp0_D* 2vho_D 2vhp_D 2wwl_D* ... Length = 205 | Back alignment and structure |
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Score = 208 bits (531), Expect = 8e-55 Identities = 79/204 (38%), Positives = 122/204 (59%), Gaps = 10/204 (4%) Query: 8 KHKIDRRIGENLWGRPKSPV----NTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 K K+ RR G +L+ + PG HG R+ + S +G+QLR KQK+++ YG Sbjct: 7 KLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKP-RLSDYGVQLREKQKVRRIYG 65 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T ARQ V+H+ ++V Sbjct: 66 -VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMV 124 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATFVRI 182 NGR VNI SY+ DV+ +++K+K+ + V A +LAE R+ P ++ V+ M TF R Sbjct: 125 NGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGTFKRK 184 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 P D+ + +L+VE YS+ Sbjct: 185 PER-SDLSADI--NEHLIVELYSK 205 |
>3i1m_D 30S ribosomal protein S4; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_D* 3e1a_R 3e1c_R 1vs5_D 3i1o_D 3i1q_D 3i1s_D 3i1z_D 3i21_D 2qal_D* 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D ... Length = 206 | Back alignment and structure |
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>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ... Length = 209 | Back alignment and structure |
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>3bbn_D Ribosomal protein S4; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 201 | Back alignment and structure |
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>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif; NMR {Bacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C Length = 159 | Back alignment and structure |
---|
>3jyv_D 40S ribosomal protein S9(A); eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus} Length = 158 | Back alignment and structure |
---|
>1s1h_D 40S ribosomal protein S9-A; 80S ribosome, 40S ribosomal subunit, EEF2, tRNA translocation, sordarin, cryo-EM; 11.70A {Saccharomyces cerevisiae} SCOP: i.1.1.1 Length = 179 | Back alignment and structure |
---|
>2cqj_A BRMS2, U3 small nucleolar ribonucleoprotein protein IMP3 homolog; S4 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71 | Back alignment and structure |
---|
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston bacterial structural genomics initiative, BSGI; NMR {Escherichia coli K12} SCOP: d.66.1.6 Length = 79 | Back alignment and structure |
---|
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A Length = 133 | Back alignment and structure |
---|
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori} Length = 92 | Back alignment and structure |
---|
Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 206 | 30S ribosomal protein S4 [Candidatus Liberibacter asiat | ||
2vqe_D | 209 | 30S ribosomal protein S4; tRNA-binding, rRNA-binding, m | 100.0 | |
3ofo_D | 205 | 30S ribosomal protein S4; protein biosynthesis, ribosom | 100.0 | |
3bbn_D | 201 | Ribosomal protein S4; small ribosomal subunit, spinach | 100.0 | |
1c05_A | 159 | Ribosomal protein S4 delta 41; two subdomains, unique t | 100.0 | |
3jyv_D | 158 | 40S ribosomal protein S9(A); eukaryotic ribosome, RACK1 | 99.94 | |
1s1h_D | 179 | 40S ribosomal protein S9-A; 80S ribosome, 40S ribosomal | 99.85 | |
2cqj_A | 71 | BRMS2, U3 small nucleolar ribonucleoprotein protein IMP | 99.69 | |
1p9k_A | 79 | ORF, hypothetical protein; alfal motif, RNA-binding pro | 98.84 | |
1dm9_A | 133 | Hypothetical 15.5 KD protein in MRCA-PCKA intergenic re | 98.74 | |
2k6p_A | 92 | Uncharacterized protein HP_1423; alpha-L motif, RNA-bin | 98.48 | |
3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019, PSI | 98.38 | |
1ksk_A | 234 | Ribosomal small subunit pseudouridine synthase A; RSUA, | 98.22 | |
3dh3_A | 290 | Ribosomal large subunit pseudouridine synthase F; prote | 98.1 | |
1vio_A | 243 | Ribosomal small subunit pseudouridine synthase A; struc | 97.98 | |
1v9f_A | 325 | Ribosomal large subunit pseudouridine synthase D; RNA b | 97.25 | |
1h3f_A | 432 | Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthet | 96.61 | |
3kbg_A | 213 | 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NE | 96.53 | |
2jan_A | 432 | Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacy | 96.42 | |
1jil_A | 420 | Tyrrs, tyrosyl-tRNA synthetase, tyrosyl-transfer; trunc | 94.68 | |
2ts1_A | 419 | Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Ge | 94.24 |
>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ... | Back alignment and structure |
---|
Probab=100.00 E-value=0 Score=527.58 Aligned_cols=202 Identities=40% Similarity=0.713 Sum_probs=191.7 Q ss_pred CCCCCCCEEEEEEECCCCCCCC------CCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH Q ss_conf 9764487123520058888888------8770001368998776544334135899999988485551565479999999 Q gi|254780187|r 1 MSKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIF 74 (206) Q Consensus 1 M~r~~gpk~K~~RrlG~~l~~~------~k~~~~~r~~~pGqhg~~r~~k~S~yg~qL~eKQKlr~~YG~~~ekq~~~~~ 74 (206) ||||+|||+|+|||||++||++ +|+++++|+++|||||+++++|.|+||+||+||||+||+|| |+|+||++|| T Consensus 1 MaRy~GPk~Ki~RRlG~~l~~~~~~~~~~K~~l~kr~~~PGqhG~~r~~k~S~Yg~qL~EKQKlr~~YG-l~EkQf~~~~ 79 (209) T 2vqe_D 1 MGRYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPGQHGQKRARRPSDYAVRLREKQKLRRIYG-ISERQFRNLF 79 (209) T ss_dssp -CCCCSCCHHHHHHHSSCCCTTSTTSSSTTCSGGGCCSCSSTTTTSCCCCCCHHHHHHHHHHHHHHHHT-CCHHHHHHHH T ss_pred CCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC-CCHHHHHHHH T ss_conf 986547687885207998667786667876500037899986666678763489999999999987518-8789999999 Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCHHHHHHHHH Q ss_conf 87530334430268999998888899862121247887887624978788889413534833884788611002269999 Q gi|254780187|r 75 KEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVL 154 (206) Q Consensus 75 ~~A~~~~g~t~~~ll~~LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~ksk~~~~i~ 154 (206) ++|.+++|+||++||++||+||||+|||+|||+|+++|||||+||||+|||++||||||.|+|||+|++++++++...+. T Consensus 80 ~~A~k~~G~tg~~ll~lLE~RlD~vv~r~g~a~s~~~ARQ~v~Hghv~vng~~v~ips~~~k~gd~i~~~~k~~~~~~v~ 159 (209) T 2vqe_D 80 EEASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIR 159 (209) T ss_dssp HHHHHSSSCHHHHHHHHHHTBHHHHHHHTTSSSSHHHHHHHHHTTCEEETTEECCCTTCBCCTTCEEEECGGGTTCHHHH T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCEECCCEEECCCCEECCCCCEEEECCCCCCHHHHH T ss_conf 99985689789999999999889999834751799999999873073219979735886827999998610211549999 Q ss_pred HHHHH-CCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECC Q ss_conf 87752-16899962788124318999967884211246753466316775049 Q gi|254780187|r 155 EASQL-AERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 (206) Q Consensus 155 ~~~~~-~~~~~P~wLevd~~~l~g~v~~~P~r~e~i~~p~~ine~LVVEyYSR 206 (206) ++++. ....+|+||++|.++|+|++++.|++ +| +|+.+||+|||||||| T Consensus 160 ~~~~~~~~~~vp~wL~~d~~~l~g~v~~~P~r-~~--i~~~ine~lVVEyYSR 209 (209) T 2vqe_D 160 QNLEAMKGRKVGPWLSLDVEGMKGKFLRLPDR-ED--LALPVNEQLVIEFYSR 209 (209) T ss_dssp HHHHHTTTCCCCTTCCEETTTTEEECCSCCCG-GG--CCCSCCHHHHHHHTTC T ss_pred HHHHHHCCCCCCCCEEECCHHCEEEEEECCCH-HH--CCCCCCCCEEEEECCC T ss_conf 99986152788886164251089999945478-87--8988773579986069 |
>3ofo_D 30S ribosomal protein S4; protein biosynthesis, ribosomes, RNA, tRNA, transfer, eryThr ketolide, macrolide, antibiotic, EXIT, peptidyl; 3.10A {Escherichia coli} PDB: 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D 2qbf_D 2qbh_D* 2qbj_D* 2qou_D* 2qow_D* 2qoy_D* 2qp0_D* 2vho_D 2vhp_D 2wwl_D* ... | Back alignment and structure |
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>3bbn_D Ribosomal protein S4; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} | Back alignment and structure |
---|
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C | Back alignment and structure |
---|
>3jyv_D 40S ribosomal protein S9(A); eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus} | Back alignment and structure |
---|
>1s1h_D 40S ribosomal protein S9-A; 80S ribosome, 40S ribosomal subunit, EEF2, tRNA translocation, sordarin, cryo-EM; 11.70A {Saccharomyces cerevisiae} SCOP: i.1.1.1 | Back alignment and structure |
---|
>2cqj_A BRMS2, U3 small nucleolar ribonucleoprotein protein IMP3 homolog; S4 domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
---|
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston bacterial structural genomics initiative, BSGI; NMR {Escherichia coli K12} SCOP: d.66.1.6 | Back alignment and structure |
---|
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A | Back alignment and structure |
---|
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori} | Back alignment and structure |
---|
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein structure initiative; HET: MSE; 1.53A {Streptococcus thermophilus lmg 18311} | Back alignment and structure |
---|
>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A* | Back alignment and structure |
---|
>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli} | Back alignment and structure |
---|
>1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5 | Back alignment and structure |
---|
>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB: 2ist_A 1qyu_A 1prz_A | Back alignment and structure |
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>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYB; 2.0A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A* | Back alignment and structure |
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>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum} | Back alignment and structure |
---|
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis} | Back alignment and structure |
---|
>1jil_A Tyrrs, tyrosyl-tRNA synthetase, tyrosyl-transfer; truncation, structure based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A* | Back alignment and structure |
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>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A | Back alignment and structure |
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Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | E-value |
206 | 30S ribosomal protein S4 [Candidatus Liberibacter asiat | |||
d2gy9d1 | 204 | d.66.1.2 (D:2-205) Ribosomal protein S4 {Escherichia co | 7e-49 | |
d2uubd1 | 208 | d.66.1.2 (D:2-209) Ribosomal protein S4 {Thermus thermo | 6e-46 | |
d1c06a_ | 159 | d.66.1.2 (A:) Ribosomal protein S4 {Bacillus stearother | 3e-40 | |
d1dm9a_ | 104 | d.66.1.3 (A:) Heat shock protein 15 kD {Escherichia col | 1e-09 | |
d1vioa2 | 58 | d.66.1.5 (A:0-57) Pseudouridine synthase RsuA N-termina | 1e-06 | |
d1p9ka_ | 79 | d.66.1.6 (A:) Hypothetical protein YbcJ {Escherichia co | 1e-04 | |
d1kska3 | 59 | d.66.1.5 (A:1-59) Pseudouridine synthase RsuA N-termina | 1e-04 |
>d2gy9d1 d.66.1.2 (D:2-205) Ribosomal protein S4 {Escherichia coli [TaxId: 562]} Length = 204 | Back information, alignment and structure |
---|
class: Alpha and beta proteins (a+b) fold: Alpha-L RNA-binding motif superfamily: Alpha-L RNA-binding motif family: Ribosomal protein S4 domain: Ribosomal protein S4 species: Escherichia coli [TaxId: 562] Score = 187 bits (475), Expect = 7e-49 Identities = 79/204 (38%), Positives = 122/204 (59%), Gaps = 10/204 (4%) Query: 8 KHKIDRRIGENLWGRPK----SPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYG 63 K K+ RR G +L+ + PG HG R+ + S +G+QLR KQK+++ YG Sbjct: 6 KLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKP-RLSDYGVQLREKQKVRRIYG 64 Query: 64 DISEKKFRSIFKEADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLV 123 + E++FR+ +KEA R +G+T NL++ LE RLD +VYR F T ARQ V+H+ ++V Sbjct: 65 -VLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMV 123 Query: 124 NGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLAE-RDVPEYISVNHDNMVATFVRI 182 NGR VNI SY+ DV+ +++K+K+ + V A +LAE R+ P ++ V+ M TF R Sbjct: 124 NGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQREKPTWLEVDAGKMEGTFKRK 183 Query: 183 PSSLKDVPYPVIMQPNLVVEFYSR 206 P D+ + +L+VE YS+ Sbjct: 184 PER-SDLSADI--NEHLIVELYSK 204 |
>d2uubd1 d.66.1.2 (D:2-209) Ribosomal protein S4 {Thermus thermophilus [TaxId: 274]} Length = 208 | Back information, alignment and structure |
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>d1c06a_ d.66.1.2 (A:) Ribosomal protein S4 {Bacillus stearothermophilus [TaxId: 1422]} Length = 159 | Back information, alignment and structure |
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>d1dm9a_ d.66.1.3 (A:) Heat shock protein 15 kD {Escherichia coli [TaxId: 562]} Length = 104 | Back information, alignment and structure |
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>d1vioa2 d.66.1.5 (A:0-57) Pseudouridine synthase RsuA N-terminal domain {Haemophilus influenzae [TaxId: 727]} Length = 58 | Back information, alignment and structure |
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>d1p9ka_ d.66.1.6 (A:) Hypothetical protein YbcJ {Escherichia coli [TaxId: 562]} Length = 79 | Back information, alignment and structure |
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>d1kska3 d.66.1.5 (A:1-59) Pseudouridine synthase RsuA N-terminal domain {Escherichia coli [TaxId: 562]} Length = 59 | Back information, alignment and structure |
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Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | Probability |
Target | 206 | 30S ribosomal protein S4 [Candidatus Liberibacter asiat | ||
d2uubd1 | 208 | Ribosomal protein S4 {Thermus thermophilus [TaxId: 274] | 100.0 | |
d2gy9d1 | 204 | Ribosomal protein S4 {Escherichia coli [TaxId: 562]} | 100.0 | |
d1c06a_ | 159 | Ribosomal protein S4 {Bacillus stearothermophilus [TaxI | 100.0 | |
d1dm9a_ | 104 | Heat shock protein 15 kD {Escherichia coli [TaxId: 562] | 99.28 | |
d1vioa2 | 58 | Pseudouridine synthase RsuA N-terminal domain {Haemophi | 98.87 | |
d1kska3 | 59 | Pseudouridine synthase RsuA N-terminal domain {Escheric | 98.86 | |
d1p9ka_ | 79 | Hypothetical protein YbcJ {Escherichia coli [TaxId: 562 | 98.62 | |
d1h3fa2 | 81 | Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain {The | 97.35 | |
d1jh3a_ | 99 | Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain {Bac | 96.71 |
>d2uubd1 d.66.1.2 (D:2-209) Ribosomal protein S4 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
---|
class: Alpha and beta proteins (a+b) fold: Alpha-L RNA-binding motif superfamily: Alpha-L RNA-binding motif family: Ribosomal protein S4 domain: Ribosomal protein S4 species: Thermus thermophilus [TaxId: 274] Probab=100.00 E-value=0 Score=524.75 Aligned_cols=201 Identities=39% Similarity=0.710 Sum_probs=189.8 Q ss_pred CCCCCCEEEEEEECCCCCCCC------CCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH Q ss_conf 764487123520058888888------87700013689987765443341358999999884855515654799999998 Q gi|254780187|r 2 SKRESSKHKIDRRIGENLWGR------PKSPVNTRSYGPGLHGQRRKSKPSYFGLQLRAKQKMKKYYGDISEKKFRSIFK 75 (206) Q Consensus 2 ~r~~gpk~K~~RrlG~~l~~~------~k~~~~~r~~~pGqhg~~r~~k~S~yg~qL~eKQKlr~~YG~~~ekq~~~~~~ 75 (206) .||+||++|+|||+|++||++ +|+++++|++||||||+++++|+|+||+||+||||+||+|| |+|+||++||+ T Consensus 1 gRy~GPk~K~~RRlG~~l~~~g~~~~~~k~~~~kr~~~PG~hg~~r~~k~S~Yg~qL~EKQKlr~~YG-v~EkQfr~~~~ 79 (208) T d2uubd1 1 GRYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPGQHGQKRARRPSDYAVRLREKQKLRRIYG-ISERQFRNLFE 79 (208) T ss_dssp CCCCSCCHHHHHHHTSCCCSSSTTSSSTTSSSSSCCSCSSTTSSSCCCCCCHHHHHHHHHHHHHHHHT-CCHHHHHHHHH T ss_pred CCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC-CCHHHHHHHHH T ss_conf 98667465641127898677785667877500048899987777678755578999999999999818-46188999999 Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCHHHHHHHHHH Q ss_conf 75303344302689999988888998621212478878876249787888894135348338847886110022699998 Q gi|254780187|r 76 EADRSRGDTSHNLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLE 155 (206) Q Consensus 76 ~A~~~~g~t~~~ll~~LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~ksk~~~~i~~ 155 (206) +|.+++|+||++||++||+||||||||+|||+|+++|||||+||||+|||++||||||.|+|||+|+++++++++..+.+ T Consensus 80 ~A~~~~G~tg~~ll~lLE~Rld~vv~r~g~a~t~~~ARQ~v~Hg~i~vNg~~v~ips~~~~~gd~I~vreksk~~~~i~~ 159 (208) T d2uubd1 80 EASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQ 159 (208) T ss_dssp HHHHSSSCHHHHHHHHHHTBHHHHHHHTTSSSSHHHHHHHHHTTCEEETTEECCCTTCBCCTTCEEEECGGGTTCHHHHH T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCEECCCEEEEECCEEECCCCEEEHHHCCCHHHHHHH T ss_conf 99854798367899999999999998536201289888998735742288399862679428862001110001899999 Q ss_pred HHHH-CCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECC Q ss_conf 7752-16899962788124318999967884211246753466316775049 Q gi|254780187|r 156 ASQL-AERDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 (206) Q Consensus 156 ~~~~-~~~~~P~wLevd~~~l~g~v~~~P~r~e~i~~p~~ine~LVVEyYSR 206 (206) +++. ....+|+||++|.++|+|+|++.|++ +| +|+.+||+|||||||| T Consensus 160 ~le~~~~~~~P~wLevd~~~l~g~v~~~P~r-ee--i~~~ine~LIVEyYSR 208 (208) T d2uubd1 160 NLEAMKGRKVGPWLSLDVEGMKGKFLRLPDR-ED--LALPVNEQLVIEFYSR 208 (208) T ss_dssp HHHHHTTCCCCTTEEEETTTTEEEECSCCCG-GG--CCCSCCHHHHHHHHHC T ss_pred HHHHHCCCCCCCCEEEECCCCEEEEEECCCH-HH--CCCCCCCCEEEEECCC T ss_conf 9986222789898674051188999944577-87--7988772579986069 |
>d2gy9d1 d.66.1.2 (D:2-205) Ribosomal protein S4 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
---|
>d1c06a_ d.66.1.2 (A:) Ribosomal protein S4 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
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>d1dm9a_ d.66.1.3 (A:) Heat shock protein 15 kD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
---|
>d1vioa2 d.66.1.5 (A:0-57) Pseudouridine synthase RsuA N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
---|
>d1kska3 d.66.1.5 (A:1-59) Pseudouridine synthase RsuA N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
---|
>d1p9ka_ d.66.1.6 (A:) Hypothetical protein YbcJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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>d1h3fa2 d.66.1.4 (A:352-432) Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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>d1jh3a_ d.66.1.4 (A:) Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
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Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 206 | 30S ribosomal protein S4 [Candidatus Liberibacter | ||
3bbn_D_82-201 | 120 | (D:82-201) Ribosomal protein S4; small ribosomal s | 2e-30 | |
3i1m_D_97-190 | 94 | (D:97-190) 30S ribosomal protein S4; ribosome stru | 3e-24 | |
2vqe_D_100-193 | 94 | (D:100-193) 30S ribosomal protein S4; tRNA-binding | 2e-21 | |
2k6p_A_ | 92 | (A:) Uncharacterized protein HP_1423; alpha-L moti | 2e-11 | |
1dm9_A_ | 133 | (A:) Hypothetical 15.5 KD protein in MRCA-PCKA int | 5e-10 | |
1s1h_D_81-179 | 99 | (D:81-179) 40S ribosomal protein S9-A; 80S ribosom | 4e-23 | |
2cqj_A_ | 71 | (A:) BRMS2, U3 small nucleolar ribonucleoprotein p | 4e-20 | |
1h3f_A_350-432 | 83 | (A:350-432) Tyrosyl-tRNA synthetase; ligase, amino | 8e-18 | |
1p9k_A_ | 79 | (A:) ORF, hypothetical protein; alfal motif, RNA-b | 2e-15 | |
3hp7_A_1-65 | 65 | (A:1-65) Hemolysin, putative; structural genomics, | 5e-14 | |
1vio_A_1-57 | 57 | (A:1-57) Ribosomal small subunit pseudouridine syn | 2e-12 | |
1ksk_A_1-58 | 58 | (A:1-58) Ribosomal small subunit pseudouridine syn | 6e-12 | |
3dh3_A_1-63 | 63 | (A:1-63) Ribosomal large subunit pseudouridine syn | 1e-07 | |
1c05_A_77-159 | 83 | (A:77-159) Ribosomal protein S4 delta 41; two subd | 1e-19 | |
2vqe_D_1-99_194-209 | 115 | (D:1-99,D:194-209) 30S ribosomal protein S4; tRNA- | 4e-19 | |
3i1m_D_1-96_191-206 | 112 | (D:1-96,D:191-206) 30S ribosomal protein S4; ribos | 4e-17 | |
1c05_A_22-76 | 55 | (A:22-76) Ribosomal protein S4 delta 41; two subdo | 2e-17 |
>3bbn_D (D:82-201) Ribosomal protein S4; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}Length = 120 | Back alignment and structure |
---|
Score = 126 bits (318), Expect = 2e-30 Identities = 48/120 (40%), Positives = 69/120 (57%), Gaps = 4/120 (3%) Query: 88 LISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKS 147 L+ LE RLD I++R PTI ARQ VNHRH+LVNGR V+I SYRCK D I + + Sbjct: 2 LLQLLEMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPQDTIMARDEQ 61 Query: 148 KQLASVLEASQLAE-RDVPEYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 K +A + + L+ ++P+++++N +I K V + LVVE+YSR Sbjct: 62 KSIALIQNSLDLSPREELPKHLTLNPFPYKGLVNQII-DSKWVGLK--INELLVVEYYSR 118 |
>3i1m_D (D:97-190) 30S ribosomal protein S4; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_D* 3e1a_R 3e1c_R 1vs5_D 3i1o_D 3i1q_D 3i1s_D 3i1z_D 3i21_D 2qal_D* 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D ...Length = 94 | Back alignment and structure |
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>2vqe_D (D:100-193) 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus}Length = 94 | Back alignment and structure |
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>2k6p_A (A:) Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}Length = 92 | Back alignment and structure |
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>1dm9_A (A:) Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli}Length = 133 | Back alignment and structure |
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>1s1h_D (D:81-179) 40S ribosomal protein S9-A; 80S ribosome, 40S ribosomal subunit, EEF2, tRNA translocation, sordarin, cryo-EM; 11.70A {Saccharomyces cerevisiae}Length = 99 | Back alignment and structure |
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>2cqj_A (A:) BRMS2, U3 small nucleolar ribonucleoprotein protein IMP3 homolog; S4 domain, structural genomics, NPPSFA; NMR {Homo sapiens}Length = 71 | Back alignment and structure |
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>1h3f_A (A:350-432) Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYB; 2.0A {Thermus thermophilus}Length = 83 | Back alignment and structure |
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>1p9k_A (A:) ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston bacterial structural genomics initiative, BSGI; NMR {Escherichia coli K12}Length = 79 | Back alignment and structure |
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>3hp7_A (A:1-65) Hemolysin, putative; structural genomics, APC64019, PSI-2, protein structure initiative; HET: MSE; 1.53A {Streptococcus thermophilus lmg 18311}Length = 65 | Back alignment and structure |
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>1vio_A (A:1-57) Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae}Length = 57 | Back alignment and structure |
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>1ksk_A (A:1-58) Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli}Length = 58 | Back alignment and structure |
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>3dh3_A (A:1-63) Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli}Length = 63 | Back alignment and structure |
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>1c05_A (A:77-159) Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif; NMR {Bacillus stearothermophilus}Length = 83 | Back alignment and structure |
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>2vqe_D (D:1-99,D:194-209) 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus}Length = 115 | Back alignment and structure |
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>3i1m_D (D:1-96,D:191-206) 30S ribosomal protein S4; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_D* 3e1a_R 3e1c_R 1vs5_D 3i1o_D 3i1q_D 3i1s_D 3i1z_D 3i21_D 2qal_D* 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D ...Length = 112 | Back alignment and structure |
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>1c05_A (A:22-76) Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif; NMR {Bacillus stearothermophilus}Length = 55 | Back alignment and structure |
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Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 206 | 30S ribosomal protein S4 [Candidatus Liberibacter asiat | ||
3bbn_D_82-201 | 120 | Ribosomal protein S4; small ribosomal subunit, spi | 100.0 | |
3i1m_D_97-190 | 94 | 30S ribosomal protein S4; ribosome structure, prot | 99.94 | |
2vqe_D_100-193 | 94 | 30S ribosomal protein S4; tRNA-binding, rRNA-bindi | 99.91 | |
2vqe_D_1-99_194-209 | 115 | 30S ribosomal protein S4; tRNA-binding, rRNA-bindi | 100.0 | |
3i1m_D_1-96_191-206 | 112 | 30S ribosomal protein S4; ribosome structure, prot | 99.97 | |
1s1h_D_81-179 | 99 | 40S ribosomal protein S9-A; 80S ribosome, 40S ribo | 99.91 | |
1c05_A_77-159 | 83 | Ribosomal protein S4 delta 41; two subdomains, uni | 99.91 | |
1c05_A_22-76 | 55 | Ribosomal protein S4 delta 41; two subdomains, uni | 99.84 | |
1jil_A_247-420 | 174 | Tyrrs, tyrosyl-tRNA synthetase, tyrosyl-transfer; | 97.63 | |
2ts1_A_246-419 | 174 | Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30 | 96.89 | |
2cqj_A_ | 71 | BRMS2, U3 small nucleolar ribonucleoprotein protei | 99.72 | |
3hp7_A_1-65 | 65 | Hemolysin, putative; structural genomics, APC64019 | 99.41 | |
1h3f_A_350-432 | 83 | Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA sy | 99.26 | |
1p9k_A_ | 79 | ORF, hypothetical protein; alfal motif, RNA-bindin | 99.1 | |
1vio_A_1-57 | 57 | Ribosomal small subunit pseudouridine synthase A; | 99.02 | |
1ksk_A_1-58 | 58 | Ribosomal small subunit pseudouridine synthase A; | 98.96 | |
1dm9_A_ | 133 | Hypothetical 15.5 KD protein in MRCA-PCKA intergen | 98.83 | |
2k6p_A_ | 92 | Uncharacterized protein HP_1423; alpha-L motif, RN | 98.67 | |
3dh3_A_1-63 | 63 | Ribosomal large subunit pseudouridine synthase F; | 98.34 | |
2jan_A_345-432 | 88 | Tyrosyl-tRNA synthetase; protein biosynthesis, ami | 97.56 | |
3kbg_A_1-81 | 81 | 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR2 | 96.84 | |
1v9f_A_ | 325 | Ribosomal large subunit pseudouridine synthase D; | 95.53 |
>3bbn_D (D:82-201) Ribosomal protein S4; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} | Back alignment and structure |
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Probab=100.00 E-value=4.1e-39 Score=274.00 Aligned_cols=117 Identities=40% Similarity=0.614 Sum_probs=109.4 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCEEEECCCEEECCCCEEEECCHHHHHHHHHHHHHHC-CCCCC Q ss_conf 68999998888899862121247887887624978788889413534833884788611002269999877521-68999 Q gi|254780187|r 87 NLISFLESRLDTIVYRAKFVPTIFAARQFVNHRHVLVNGRSVNIGSYRCKEGDVIEVKQKSKQLASVLEASQLA-ERDVP 165 (206) Q Consensus 87 ~ll~~LE~RLD~~v~r~g~a~t~~~Arq~v~hg~i~vng~~v~~ps~~~k~gd~I~~~~ksk~~~~i~~~~~~~-~~~~P 165 (206) .|+++||+|||++|||+|||+|+++|||+|+||||+|||++|++|||+|++||+|++++++++...+..+.+.. ...+| T Consensus 1 ~ll~~LE~RLD~~l~R~gfa~s~~~ARqlI~hghV~VNg~~v~~ps~~v~~gD~i~~~~~~~~~~~~~~~~~~~~~~~~p 80 (120) T 3bbn_D 1 VLLQLLEMRLDNILFRLGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPQDTIMARDEQKSIALIQNSLDLSPREELP 80 (120) T ss_dssp TTTHHHHSBTTTTTTTTTSSSSSHHHHHHHHTTCEEETTEECCCTTCBCCTTEEEEECSSTTSCHHHHHHSSSTTTSCCC T ss_pred HHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHCEECCCEEECCCCEECCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCC T ss_conf 79998987531035505733576888899987513615489816572546166300100131499999999852658999 Q ss_pred CEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECC Q ss_conf 62788124318999967884211246753466316775049 Q gi|254780187|r 166 EYISVNHDNMVATFVRIPSSLKDVPYPVIMQPNLVVEFYSR 206 (206) Q Consensus 166 ~wLevd~~~l~g~v~~~P~r~e~i~~p~~ine~LVVEyYSR 206 (206) +||++|+++++|++++.|++.+ +|..+||+|||||||| T Consensus 81 ~~Levd~~~~~~~~~~~P~r~e---i~~~i~e~lVvE~Ysr 118 (120) T 3bbn_D 81 KHLTLNPFPYKGLVNQIIDSKW---VGLKINELLVVEYYSR 118 (120) T ss_dssp TTEEEETTTTEEEECSCCCGGG---CCCSCCHHHHTTTSCC T ss_pred CEEEEECCCCEEEEECCCCHHH---CCCCCCCCEEEEECCC T ss_conf 8699874448899973777300---8999874479997677 |
>3i1m_D (D:97-190) 30S ribosomal protein S4; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_D* 3e1a_R 3e1c_R 1vs5_D 3i1o_D 3i1q_D 3i1s_D 3i1z_D 3i21_D 2qal_D* 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D ... | Back alignment and structure |
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>2vqe_D (D:100-193) 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} | Back alignment and structure |
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>2vqe_D (D:1-99,D:194-209) 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} | Back alignment and structure |
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>3i1m_D (D:1-96,D:191-206) 30S ribosomal protein S4; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_D* 3e1a_R 3e1c_R 1vs5_D 3i1o_D 3i1q_D 3i1s_D 3i1z_D 3i21_D 2qal_D* 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D ... | Back alignment and structure |
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>1s1h_D (D:81-179) 40S ribosomal protein S9-A; 80S ribosome, 40S ribosomal subunit, EEF2, tRNA translocation, sordarin, cryo-EM; 11.70A {Saccharomyces cerevisiae} | Back alignment and structure |
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>1c05_A (A:77-159) Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif; NMR {Bacillus stearothermophilus} | Back alignment and structure |
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>1c05_A (A:22-76) Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif; NMR {Bacillus stearothermophilus} | Back alignment and structure |
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>1jil_A (A:247-420) Tyrrs, tyrosyl-tRNA synthetase, tyrosyl-transfer; truncation, structure based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} | Back alignment and structure |
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>2ts1_A (A:246-419) Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} | Back alignment and structure |
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>2cqj_A (A:) BRMS2, U3 small nucleolar ribonucleoprotein protein IMP3 homolog; S4 domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
---|
>3hp7_A (A:1-65) Hemolysin, putative; structural genomics, APC64019, PSI-2, protein structure initiative; HET: MSE; 1.53A {Streptococcus thermophilus lmg 18311} | Back alignment and structure |
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>1h3f_A (A:350-432) Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYB; 2.0A {Thermus thermophilus} | Back alignment and structure |
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>1p9k_A (A:) ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston bacterial structural genomics initiative, BSGI; NMR {Escherichia coli K12} | Back alignment and structure |
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>1vio_A (A:1-57) Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} | Back alignment and structure |
---|
>1ksk_A (A:1-58) Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} | Back alignment and structure |
---|
>1dm9_A (A:) Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} | Back alignment and structure |
---|
>2k6p_A (A:) Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori} | Back alignment and structure |
---|
>3dh3_A (A:1-63) Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli} | Back alignment and structure |
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>2jan_A (A:345-432) Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis} | Back alignment and structure |
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>3kbg_A (A:1-81) 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum} | Back alignment and structure |
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>1v9f_A (A:) Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} | Back alignment and structure |
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