254780194

 Score =  142 bits (359), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 66/74 (89%), Positives = 73/74 (98%)

Query: 1  MKKNIHPETHLITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGGQ 60
          MKKNIHP+THLITVVMTDGT+YQTR+TWKEEGAVMKLDIDPLSH AWIGG++KITDRGGQ
Sbjct: 1  MKKNIHPKTHLITVVMTDGTEYQTRTTWKEEGAVMKLDIDPLSHSAWIGGKRKITDRGGQ 60

Query: 61 VSRFKKRFAGLSIE 74
          VS+FKKRF+GLSIE
Sbjct: 61 VSKFKKRFSGLSIE 74

Species: Candidatus Liberibacter solanacearum
Genus: Candidatus Liberibacter
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  109 bits (272), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 48/73 (65%), Positives = 60/73 (82%)

Query: 1  MKKNIHPETHLITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGGQ 60
          MK+++HP+ H+ITVVMT+GT+YQTRSTW  EG  M LDIDP +H AW GG Q++ DRGG+
Sbjct: 1  MKQDLHPDYHMITVVMTNGTEYQTRSTWGSEGDKMNLDIDPTTHPAWTGGNQQLMDRGGR 60

Query: 61 VSRFKKRFAGLSI 73
          VSRFKKR+ GL I
Sbjct: 61 VSRFKKRYEGLGI 73

Species: Fulvimarina pelagi
Genus: Fulvimarina
Family: Aurantimonadaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 48/73 (65%), Positives = 56/73 (76%)

Query: 1  MKKNIHPETHLITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGGQ 60
          MK NIHP+ H+I VVMTDGTQY TRSTW +EG  + LDIDP+SH AW GG Q + DRGG+
Sbjct: 1  MKANIHPDYHMINVVMTDGTQYTTRSTWGKEGDTLNLDIDPISHPAWTGGSQTLVDRGGR 60

Query: 61 VSRFKKRFAGLSI 73
          VS+FK RF GL  
Sbjct: 61 VSKFKNRFGGLGF 73

Species: Bartonella sp. AR 15-3
Genus: Bartonella
Family: Bartonellaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  107 bits (267), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 48/73 (65%), Positives = 57/73 (78%)

Query: 1  MKKNIHPETHLITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGGQ 60
          MK +IHP  H I VVMTDGT+Y+TRSTW  EGAVM L+IDP SH AW GG Q++ DRGG+
Sbjct: 1  MKADIHPAYHTIKVVMTDGTEYETRSTWGSEGAVMNLEIDPKSHPAWTGGNQQLMDRGGR 60

Query: 61 VSRFKKRFAGLSI 73
          VS+F KRF GL +
Sbjct: 61 VSKFNKRFGGLGL 73

Species: Agrobacterium tumefaciens
Genus: Agrobacterium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  107 bits (267), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 48/73 (65%), Positives = 58/73 (79%)

Query: 1  MKKNIHPETHLITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGGQ 60
          MK +IHP+ H I VVMTDGT+Y+TRSTW  EGA M L+IDP SH AW GG Q++ DRGG+
Sbjct: 1  MKADIHPDYHTIKVVMTDGTEYETRSTWGTEGATMNLEIDPKSHPAWTGGNQQLVDRGGR 60

Query: 61 VSRFKKRFAGLSI 73
          VS+FKKRF GL +
Sbjct: 61 VSKFKKRFEGLGL 73

Species: Sinorhizobium meliloti
Genus: Sinorhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  107 bits (266), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 48/73 (65%), Positives = 57/73 (78%)

Query: 1  MKKNIHPETHLITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGGQ 60
          MK  IHPE H+I VVMTDGT+Y+TRSTW  EGAVM L+ID  SH AW GG Q++ DRGG+
Sbjct: 1  MKAGIHPEYHMIKVVMTDGTEYETRSTWGSEGAVMNLEIDSKSHPAWTGGNQQLMDRGGR 60

Query: 61 VSRFKKRFAGLSI 73
          VS+F KRF GL +
Sbjct: 61 VSKFNKRFGGLGL 73

Species: Rhizobium leguminosarum
Genus: Rhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  105 bits (263), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 47/73 (64%), Positives = 57/73 (78%)

Query: 1  MKKNIHPETHLITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGGQ 60
          MK  IHP+ H+I VVMTDGT+Y+TRSTW  EGAVM L+ID  SH AW GG Q++ DRGG+
Sbjct: 1  MKAGIHPDYHMIKVVMTDGTEYETRSTWGSEGAVMNLEIDSKSHPAWTGGNQQLMDRGGR 60

Query: 61 VSRFKKRFAGLSI 73
          VS+F KRF GL +
Sbjct: 61 VSKFNKRFGGLGL 73

Species: Rhizobium etli
Genus: Rhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  105 bits (262), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 46/73 (63%), Positives = 59/73 (80%)

Query: 1  MKKNIHPETHLITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGGQ 60
          MK +IHP+ H+I VVMTDGT+Y+TRSTW +EG  + LDIDP SH AW GG+Q + DRGG+
Sbjct: 1  MKADIHPDYHMIKVVMTDGTEYETRSTWGKEGDTLNLDIDPNSHPAWTGGQQTLVDRGGR 60

Query: 61 VSRFKKRFAGLSI 73
          +S+FKKR+ GL I
Sbjct: 61 LSKFKKRYEGLGI 73

Species: Chelativorans sp. BNC1
Genus: Chelativorans
Family: Phyllobacteriaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  105 bits (262), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 47/73 (64%), Positives = 57/73 (78%)

Query: 1  MKKNIHPETHLITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGGQ 60
          MK  IHP+ H+I VVMTDGT+Y+TRSTW  EGAVM L+ID  SH AW GG Q++ DRGG+
Sbjct: 14 MKAGIHPDYHMIKVVMTDGTEYETRSTWGSEGAVMNLEIDSKSHPAWTGGNQQLMDRGGR 73

Query: 61 VSRFKKRFAGLSI 73
          VS+F KRF GL +
Sbjct: 74 VSKFNKRFGGLGL 86

Species: Rhizobium etli
Genus: Rhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  105 bits (261), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 46/74 (62%), Positives = 60/74 (81%)

Query: 1  MKKNIHPETHLITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGGQ 60
          MKK+IHP+ H+ITV MTDGT+YQTRSTW  EG VM L+IDP +H AW GG+ ++ D GGQ
Sbjct: 1  MKKDIHPDYHMITVKMTDGTEYQTRSTWGSEGDVMTLEIDPTAHPAWTGGQGRMLDSGGQ 60

Query: 61 VSRFKKRFAGLSIE 74
          V++F KRF GL+++
Sbjct: 61 VAKFNKRFGGLTLK 74

Species: Sphingopyxis alaskensis
Genus: Sphingopyxis
Family: Sphingomonadaceae
Order: Sphingomonadales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  114 bits (288), Expect = 5e-27
 Identities = 42/71 (59%), Positives = 55/71 (77%)

Query: 1  MKKNIHPETHLITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGGQ 60
          MKK+IHP+ H I VVMTDGT+Y+TRSTW + G  ++LDID  +H AW GG QK+ D GG+
Sbjct: 1  MKKDIHPDYHPIKVVMTDGTEYETRSTWGKTGPELRLDIDSGNHPAWTGGTQKLLDTGGR 60

Query: 61 VSRFKKRFAGL 71
          V++F K+F GL
Sbjct: 61 VAKFNKKFGGL 71

Length = 71

 Score =  101 bits (254), Expect = 4e-23
 Identities = 35/71 (49%), Positives = 45/71 (63%), Gaps = 3/71 (4%)

Query: 1  MKKNIHPETHLITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGGQ 60
          MKK+IHP+ H ITV  T G  + TRSTW +E   + LDI    H  +  G+QKI D GG+
Sbjct: 1  MKKDIHPDYHEITVTCTCGNVFTTRSTWGKE--TLNLDICSKCHPFYT-GKQKIVDTGGR 57

Query: 61 VSRFKKRFAGL 71
          V +F K+F GL
Sbjct: 58 VDKFNKKFGGL 68

This family consists exclusively of bacterial (and organellar) 50S ribosomal protein L31. In some species, such as Bacillus subtilis, this protein exists in two forms (RpmE and YtiA), one of which (RpmE) contains a pair of motifs, CXC and CXXC, for binding zinc. Length = 68

 Score = 73.0 bits (179), Expect = 2e-14
 Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 5/74 (6%)

Query: 1  MKKNIHPETHLITVVMTD--GTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRG 58
          MKK+IHPE +   V +    G ++ TRST   +   + LD+    H  + G +QKI D  
Sbjct: 1  MKKDIHPEYYRPVVFVCSSCGNEFTTRSTKGTD--EINLDVCSKCHPFYTG-KQKIVDTE 57

Query: 59 GQVSRFKKRFAGLS 72
          G+V +F KRF G  
Sbjct: 58 GRVEKFNKRFGGFK 71

Length = 75

 Score = 59.6 bits (145), Expect = 2e-10
 Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 3/69 (4%)

Query: 1  MKKNIHPETHLITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGGQ 60
          MKK+IHP+   +TV  + G  ++TRST  ++   + +D+    H  +  G+QKI D GG+
Sbjct: 1  MKKDIHPKYEEVTVTCSCGNVFETRSTLGKD--EINVDVCSKCHPFYT-GKQKIVDTGGR 57

Query: 61 VSRFKKRFA 69
          V RF KRF 
Sbjct: 58 VERFNKRFG 66

Length = 72

 Score = 55.3 bits (134), Expect = 4e-09
 Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 16/83 (19%)

Query: 1  MKKNIHPETHLITVV---MTDGTQYQTRSTWK-------EEG---AVMKLDIDPLSHFAW 47
          MKK IHPE     VV    + G ++ T ST         E+G    ++K++I   SH  +
Sbjct: 1  MKKGIHPEYR--PVVFHDTSTGFKFLTGSTITTDETIEWEDGKTYPLVKVEISSASHPFY 58

Query: 48 IGGRQKITDRGGQVSRFKKRFAG 70
           G +QK  D  G+V +F KRF  
Sbjct: 59 TG-KQKFVDTEGRVEKFNKRFGR 80

Length = 87

 Score = 40.3 bits (94), Expect = 1e-04
 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 1  MKKNIHPETHLITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGGQ 60
          MK  IHPE     ++      ++T ST      +M  D+D   H AW      + ++  +
Sbjct: 1  MKSGIHPEYKKF-LIKVGSDVFETMSTHPTGEILM--DVDFRKHPAWNKDSGNVVNQSNK 57

Query: 61 -VSRFKKRFAGLS 72
           VS F KRF+GLS
Sbjct: 58 SVSDFNKRFSGLS 70

Length = 78

 Score = 37.3 bits (87), Expect = 9e-04
 Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 1  MKKNIHPETHLITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGGQ 60
           KKNIHP+    T V  DG    T  + K E   + +DI   +H  +  G QKI D  G+
Sbjct: 2  PKKNIHPQWFPETKVYCDGQLVMTVGSTKPE---LNVDIWSGNHPFYT-GSQKIIDTEGR 57

Query: 61 VSRFKKRFAG 70
          V RF K++  
Sbjct: 58 VERFMKKYGL 67

Length = 68

 Score = 79.1 bits (196), Expect = 3e-16
 Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 4/71 (5%)

Query: 1  MKKNIHPETHLITVVMT-DGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGG 59
          MKK IHPE   +    +  G  + TRST +    V+K+D+    H  + G +QK+ D  G
Sbjct: 1  MKKGIHPEYREVVFTCSSCGNVFVTRSTKEYP--VIKIDVCSACHPFYTG-KQKLVDTAG 57

Query: 60 QVSRFKKRFAG 70
          +V +F KRF  
Sbjct: 58 RVEKFNKRFGK 68

Length = 69

Probab=99.97  E-value=2.2e-31  Score=207.14  Aligned_cols=71  Identities=63%  Similarity=1.091  Sum_probs=68.0

Q ss_pred             CCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCCEECCCEEEEECCCHHHHHHHHHHCC
Q ss_conf             98878898407999987999799887654768869998548778971168178972136489999776026
Q gi|254780194|r    1 MKKNIHPETHLITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGGQVSRFKKRFAGL   71 (74)
Q Consensus         1 MKk~IHP~y~~v~v~~t~g~~~~t~sT~g~~~~~~~vdi~s~~HP~fytgkq~~~dt~GrveKF~kkfg~~   71 (74)
T Consensus         1 MKk~IHP~y~~~~v~~~~G~~~~t~st~G~~~~~i~vdi~s~~HPfyTgG~q~~~dt~GRV~kF~kryg~l   71 (71)
T PRK00528          1 MKKDIHPDYHPIKVVMTDGTEYETRSTWGKEGPELRLDIDSGNHPAWTGGTQKILDTGGRVAKFKKKFGGL   71 (71)
T ss_pred             CCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCEEEEEECCCCCCCEECCCEEEECCCCCHHHHHHHHCCC
T ss_conf             98987999887899994999999867678778859998679888768589248971665699998770699

Probab=99.97  E-value=1.3e-30  Score=202.70  Aligned_cols=73  Identities=33%  Similarity=0.549  Sum_probs=68.9

Q ss_pred             CCCCCCCCCEEEEEE-ECCCCEEEEEEEE---------CCCCCEEEEEECCCCCCCEECCCEEEEECCCHHHHHHHHHHC
Q ss_conf             988788984079999-8799979988765---------476886999854877897116817897213648999977602
Q gi|254780194|r    1 MKKNIHPETHLITVV-MTDGTQYQTRSTW---------KEEGAVMKLDIDPLSHFAWIGGRQKITDRGGQVSRFKKRFAG   70 (74)
Q Consensus         1 MKk~IHP~y~~v~v~-~t~g~~~~t~sT~---------g~~~~~~~vdi~s~~HP~fytgkq~~~dt~GrveKF~kkfg~   70 (74)
T Consensus         1 MKk~IHP~Y~~v~f~d~s~g~~f~~~ST~~~~~t~~~eG~~yP~~~vdi~S~~HP-FyTG~qk~vdt~GRVekF~kRy~~   79 (86)
T PRK01678          1 MKKGIHPEYRPVVFHDTSTGFKFLTGSTITTDETIEWEGKTYPLVKVEVSSASHP-FYTGKQKFVDTEGRVEKFNKRFGR   79 (86)
T ss_pred             CCCCCCCCCEEEEEEECCCCCEEEECCCCCCCCEEEECCEECCEEEEEECCCCCC-CEECCEEEEECCHHHHHHHHHHHH
T ss_conf             9898799980688898879999982754367840667786777698610688885-481876786143129999988731


Q ss_pred             CCCC
Q ss_conf             6789
Q gi|254780194|r   71 LSIE   74 (74)
Q Consensus        71 ~~~k   74 (74)
T Consensus        80 ~~~~   83 (86)
T PRK01678         80 FASK   83 (86)
T ss_pred             HCCC
T ss_conf             0223

Probab=99.96  E-value=2.7e-29  Score=194.78  Aligned_cols=70  Identities=40%  Similarity=0.656  Sum_probs=66.1

Q ss_pred             CCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCCEECCCEEEEECCCHHHHHHHHHHCCCCC
Q ss_conf             98878898407999987999799887654768869998548778971168178972136489999776026789
Q gi|254780194|r    1 MKKNIHPETHLITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGGQVSRFKKRFAGLSIE   74 (74)
Q Consensus         1 MKk~IHP~y~~v~v~~t~g~~~~t~sT~g~~~~~~~vdi~s~~HP~fytgkq~~~dt~GrveKF~kkfg~~~~k   74 (74)
T Consensus         1 MKk~IHP~y~~v~~~cscg~~f~~~ST~~~~---~~vdi~s~~HP-FyTG~q~~~dt~GRVekF~kry~~~~~~   70 (71)
T PRK00019          1 MKKDIHPKYEEVTVTCSCGNVFKTRSTKGKD---INIDVCSKCHP-FYTGKQKIVDTGGRVERFNKRFGKPGAK   70 (71)
T ss_pred             CCCCCCCCCEEEEEEECCCCEEEECCCCCCC---EEEEECCCCCC-CEECCEEEEECCCCHHHHHHHHCCCCCC
T ss_conf             9887799988899998889989851324753---88887689876-1848777871467699999877023468

Probab=99.95  E-value=7.1e-28  Score=186.41  Aligned_cols=70  Identities=40%  Similarity=0.645  Sum_probs=65.3

Q ss_pred             CCCCCCCCC-EEEEEEEC-CCCEEEEEEEECCCCCEEEEEECCCCCCCEECCCEEEEECCCHHHHHHHHHHCCCC
Q ss_conf             988788984-07999987-99979988765476886999854877897116817897213648999977602678
Q gi|254780194|r    1 MKKNIHPET-HLITVVMT-DGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGGQVSRFKKRFAGLSI   73 (74)
Q Consensus         1 MKk~IHP~y-~~v~v~~t-~g~~~~t~sT~g~~~~~~~vdi~s~~HP~fytgkq~~~dt~GrveKF~kkfg~~~~   73 (74)
T Consensus         1 MKk~IHP~y~~~v~~~~~s~g~~f~~~ST~~~~--~i~vdV~s~~HP-FyTG~qk~~d~~GRv~kF~kRf~~~~~   72 (75)
T COG0254           1 MKKDIHPEYYRPVVFVCSSCGNEFTTRSTKGTD--EINLDVCSKCHP-FYTGKQKIVDTEGRVEKFNKRFGGFKG   72 (75)
T ss_pred             CCCCCCCCCCCEEEEEECCCCCEEEEEECCCCC--EEEEEECCCCCC-CCCCCEEEECCCCCHHHHHHHHCCCCC
T ss_conf             988769876324899967899789977516886--089986799877-693854576065539999877634344

Probab=99.95  E-value=1.2e-27  Score=185.18  Aligned_cols=67  Identities=40%  Similarity=0.625  Sum_probs=63.3

Q ss_pred             CCCCCCCCCEEEEEEEC-CCCEEEEEEEECCCCCEEEEEECCCCCCCEECCCEEEEECCCHHHHHHHHHHC
Q ss_conf             98878898407999987-99979988765476886999854877897116817897213648999977602
Q gi|254780194|r    1 MKKNIHPETHLITVVMT-DGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGGQVSRFKKRFAG   70 (74)
Q Consensus         1 MKk~IHP~y~~v~v~~t-~g~~~~t~sT~g~~~~~~~vdi~s~~HP~fytgkq~~~dt~GrveKF~kkfg~   70 (74)
T Consensus         1 MKk~IHP~y~~v~~~c~~cg~~f~t~ST~--~~~~i~vdi~s~cHP-fyTG~~~~~dt~GRVeKF~kkf~~   68 (69)
T pfam01197         1 MKKGIHPEYREVVFTCSSCGNVFVTRSTK--EYPVIKIDVCSACHP-FYTGKQKLVDTAGRVEKFNKRFGK   68 (69)
T ss_pred             CCCCCCCCCEEEEEEECCCCCEEEEEECC--CCCCEEEEECCCCCC-EECCCEEEECCCHHHHHHHHHHCC
T ss_conf             98877998735689999999799973703--586099986489888-481987885142359999888746

Probab=99.94  E-value=5e-27  Score=181.42  Aligned_cols=67  Identities=37%  Similarity=0.561  Sum_probs=63.2

Q ss_pred             CCCCCCCCCEEEEEEEC-CCCEEEEEEEECCCCCEEEEEECCCCCCCEECCCEEEEECCCHHHHHHHHHHC
Q ss_conf             98878898407999987-99979988765476886999854877897116817897213648999977602
Q gi|254780194|r    1 MKKNIHPETHLITVVMT-DGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGGQVSRFKKRFAG   70 (74)
Q Consensus         1 MKk~IHP~y~~v~v~~t-~g~~~~t~sT~g~~~~~~~vdi~s~~HP~fytgkq~~~dt~GrveKF~kkfg~   70 (74)
T Consensus         2 MK~~IHP~y~~~~~~~~~C~~~~~~~s~~~k--~e~~~dics~CHP-FYtG~~~~~~t~GRVerf~~kf~~   69 (77)
T TIGR00105         2 MKKGIHPEYQEIPAACVSCNNGFEIESTSTK--KEINIDICSKCHP-FYTGKQKIVDTGGRVERFNKKFNL   69 (77)
T ss_pred             CCCCCCCCCCCEECEEEEECCCEEEEECCCC--CEEEEEECCCCCC-CEECCEEEEECCCCHHHHHHHCCC
T ss_conf             8887898953010106662597787552777--3146886489889-420440367426641311213288

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . Ribosomal protein L31 is one of the proteins from the large ribosomal subunit. L31 is a protein of 66 to 97 amino-acid residues which has only been found so far in bacteria and in some plant and algal chloroplasts.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome.

Probab=99.93  E-value=2.8e-26  Score=177.01  Aligned_cols=71  Identities=32%  Similarity=0.519  Sum_probs=67.0

Q ss_pred             CCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCCEECCCEEEEECCCH-HHHHHHHHHCCCCC
Q ss_conf             988788984079999879997998876547688699985487789711681789721364-89999776026789
Q gi|254780194|r    1 MKKNIHPETHLITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGGQ-VSRFKKRFAGLSIE   74 (74)
Q Consensus         1 MKk~IHP~y~~v~v~~t~g~~~~t~sT~g~~~~~~~vdi~s~~HP~fytgkq~~~dt~Gr-veKF~kkfg~~~~k   74 (74)
T Consensus         1 MKkdIHPdYh~I~V~~~-G~~f~trST~--~gd~l~LDIDp~~HPAWTGg~~~lld~ggrqVskFnKrf~gL~f~   72 (78)
T PRK01397          1 MKSGIHPEYKKFLIKVG-SDVFETMSTH--PTGEILMDVDFRKHPAWNKDSGNVVNQSNKSVSDFNKRFSGLSFG   72 (78)
T ss_pred             CCCCCCCCCEEEEEEEC-CCEEEEEECC--CCCEEEEECCCCCCCCEECCCCEEEECCCCCHHHHHHHCCCCCCC
T ss_conf             98776888748999968-9778876024--797689823898887446786267806896547754013566657

Probab=99.93  E-value=3.3e-26  Score=176.54  Aligned_cols=67  Identities=33%  Similarity=0.356  Sum_probs=57.7

Q ss_pred             CCCCCCCCCEE-EEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCCEECCCEEEEECCCHHHHHHHHHHCCC
Q ss_conf             98878898407-9999879997998876547688699985487789711681789721364899997760267
Q gi|254780194|r    1 MKKNIHPETHL-ITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGGQVSRFKKRFAGLS   72 (74)
Q Consensus         1 MKk~IHP~y~~-v~v~~t~g~~~~t~sT~g~~~~~~~vdi~s~~HP~fytgkq~~~dt~GrveKF~kkfg~~~   72 (74)
T Consensus         2 ~Kk~IHP~y~~~~~v~c~g~~~~~~~st----~~~~~vdIcS~cHP-FyTG~Qr~vdt~GRVekF~kryg~~~   69 (72)
T CHL00136          2 PKKNIHPTWYPDAKVYCDGQLVMTIGST----KPELHVDIWSGNHP-FYTGSQKIIDTEGRVERFMRKYGLNS   69 (72)
T ss_pred             CCCCCCCCCEEEEEEECCCCCEEEECCC----CCCEEEEECCCCCC-CCCCCEEEEECCCCHHHHHHHHCCCC
T ss_conf             8887898763148999389858986655----77589888689988-58487678714756999977547876

 Score = 86.3 bits (214), Expect = 1e-18
 Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 4/72 (5%)

Query: 1  MKKNIHPETHLITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGGQ 60
          MKK+IHP+   IT   + G   + RST   +   + LD+    H  + G  Q+    GG+
Sbjct: 1  MKKDIHPKYEEITASCSCGNVMKIRSTVGHD---LNLDVCSKCHPFFTGK-QRDVATGGR 56

Query: 61 VSRFKKRFAGLS 72
          V RF KRF    
Sbjct: 57 VDRFNKRFNIPG 68

 Score = 84.8 bits (210), Expect = 4e-18
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 5/72 (6%)

Query: 1  MKKNIHPETHLITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGGQ 60
          M+K++HP+     ++       +T ST  E    + +D+    H  W  G ++  D  G+
Sbjct: 1  MQKDLHPKAVPCKIIYQGQVVMETMSTRPE----IHVDVWSGVHPFWT-GEERFLDTEGR 55

Query: 61 VSRFKKRFAGLS 72
          V +F KRF    
Sbjct: 56 VDKFNKRFGDSY 67

 Score = 83.1 bits (205), Expect = 1e-17
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 5/73 (6%)

Query: 1   MKKNIHPETHLITVVMTD-GTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGG 59
            KK +HPE H    V  +      T  T KE      +D+   +H  ++G R  +     
Sbjct: 49  RKKELHPEFHEDAKVYCNGELVMTTGGTKKE----YVVDVWSGNHPFYLGNRSALMVDAD 104

Query: 60  QVSRFKKRFAGLS 72
           QV +F+KRFAGLS
Sbjct: 105 QVEKFRKRFAGLS 117

 Score = 78.4 bits (193), Expect = 4e-16
 Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 5/69 (7%)

Query: 1  MKKNIHPETHLITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGGQ 60
          +K+ IHP+     ++   G   +T ST  E    + +++    H  +  G+Q+  D  G+
Sbjct: 27 VKEGIHPKLVPARIICGCGNVIETYSTKPE----IYVEVCSKCHPFYT-GQQRFVDTEGR 81

Query: 61 VSRFKKRFA 69
          V RF++R+ 
Sbjct: 82 VERFQRRYG 90

 Score = 76.3 bits (188), Expect = 2e-15
 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 5/72 (6%)

Query: 1  MKKNIHPETHLITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGGQ 60
          MK+ IHP+     ++   G   +T ST  E    + +++    H  +  G+Q+  D  G+
Sbjct: 1  MKEGIHPKLVPARIICGCGNVIETYSTKPE----IYVEVCSKCHPFYT-GQQRFVDTEGR 55

Query: 61 VSRFKKRFAGLS 72
          V RF++R+    
Sbjct: 56 VERFQRRYGDSY 67

Probab=99.95  E-value=3.4e-28  Score=187.04  Aligned_cols=68  Identities=25%  Similarity=0.410  Sum_probs=64.0

Q ss_pred             CCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCCEECCCEEEEECCCHHHHHHHHHHCCCC
Q ss_conf             9887889840799998799979988765476886999854877897116817897213648999977602678
Q gi|254780194|r    1 MKKNIHPETHLITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGGQVSRFKKRFAGLSI   73 (74)
Q Consensus         1 MKk~IHP~y~~v~v~~t~g~~~~t~sT~g~~~~~~~vdi~s~~HP~fytgkq~~~dt~GrveKF~kkfg~~~~   73 (74)
                      ||+||||+|+++.|.|+||++|.+.||.    |++.|||||+||| ||||+|+++|++|||||||+|||++..
T Consensus         1 MKk~IHP~y~~~~v~~~~~~~~~~~st~----~~~~vdv~s~~HP-fyTGkq~~vdt~GRVekF~krf~~~~~   68 (73)
T 1nkw_Y            1 MQKDLHPKAVPCKIIYQGQVVMETMSTR----PEIHVDVWSGVHP-FWTGEERFLDTEGRVDKFNKRFGDSYR   68 (73)
T ss_pred             CCCCCCCCCEEEEEEECCCCEEEECCCC----CCEEEEECCCCCC-CEECCEEEEECCCCHHHHHHHHHHHCC
T ss_conf             9887799988799998998699954116----6278887688877-181878887236509999998740312

Probab=99.94  E-value=6e-29  Score=191.47  Aligned_cols=69  Identities=25%  Similarity=0.410  Sum_probs=64.8

Q ss_pred             CCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCCEECCCEEEEECCCHHHHHHHHHHCCCCC
Q ss_conf             98878898407999987999799887654768869998548778971168178972136489999776026789
Q gi|254780194|r    1 MKKNIHPETHLITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGGQVSRFKKRFAGLSIE   74 (74)
Q Consensus         1 MKk~IHP~y~~v~v~~t~g~~~~t~sT~g~~~~~~~vdi~s~~HP~fytgkq~~~dt~GrveKF~kkfg~~~~k   74 (74)
                      ||+||||+|++++|.|+||++|+++||.    +++.|||||+||| ||||+|+++|++|||||||+|||....|
T Consensus        27 MKk~IHP~y~~v~v~cscg~~f~~~ST~----~~~~vdIcs~cHP-FyTG~qk~vdt~GRVeKF~krfg~~~kK   95 (97)
T 3f1f_4           27 VKEGIHPKLVPARIICGCGNVIETYSTK----PEIYVEVCSKCHP-FYTGQQRFVDTEGRVERFQRRYGDSYRK   95 (97)
T ss_dssp             ---------CCCEEEETTEEEEECCCSS----CCEEESSCTTC-------------------------------
T ss_pred             CCCCCCCCCEEEEEEECCCCEEEEEECC----CCEEEEECCCCCC-CCCCCEEEEECCCCHHHHHHHHCCCCCC
T ss_conf             5667898878899997899999973525----6589887689877-4818787871567399999987232324

Probab=99.93  E-value=2.7e-29  Score=193.48  Aligned_cols=70  Identities=36%  Similarity=0.529  Sum_probs=66.6

Q ss_pred             CCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCCEECCCEEEEECCCHHHHHHHHHHCCCCC
Q ss_conf             98878898407999987999799887654768869998548778971168178972136489999776026789
Q gi|254780194|r    1 MKKNIHPETHLITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGGQVSRFKKRFAGLSIE   74 (74)
Q Consensus         1 MKk~IHP~y~~v~v~~t~g~~~~t~sT~g~~~~~~~vdi~s~~HP~fytgkq~~~dt~GrveKF~kkfg~~~~k   74 (74)
                      ||+||||+|++|++.|+||++|.++||++.+   +.|||||+||| ||||+|+++|++|||||||+||+.++.|
T Consensus         1 MKk~IHP~y~~v~~~~s~g~~~~~~sT~~~e---~~vdi~s~~HP-fyTGkq~~~dt~GRVekF~kry~~~~~K   70 (70)
T 1vs6_Z            1 MKKDIHPKYEEITASCSCGNVMKIRSTVGHD---LNLDVCSKCHP-FFTGKQRDVATGGRVDRFNKRFNIPGSK   70 (70)
T ss_dssp             CCCTTSCCCCCCBCCCCSSCCCCCBCCCCCC---CCCBCCSSSCC-BCCCCCTTTTTHHHHSCSSTTTTTTSCC
T ss_pred             CCCCCCCCCEEEEEEECCCCEEEEEEEECCC---EEEEECCCCCC-CCCCCEEEEECCCCHHHHHHHHCCCCCC
T ss_conf             9798799998799997799999985781773---89987899977-6939787871477699998766553579

Probab=99.92  E-value=8.8e-29  Score=190.50  Aligned_cols=69  Identities=26%  Similarity=0.435  Sum_probs=64.5

Q ss_pred             CCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCCEECCCEEEEECCCHHHHHHHHHHCCCCC
Q ss_conf             98878898407999987999799887654768869998548778971168178972136489999776026789
Q gi|254780194|r    1 MKKNIHPETHLITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGGQVSRFKKRFAGLSIE   74 (74)
Q Consensus         1 MKk~IHP~y~~v~v~~t~g~~~~t~sT~g~~~~~~~vdi~s~~HP~fytgkq~~~dt~GrveKF~kkfg~~~~k   74 (74)
                      ||+||||+|+++.|.|+||++|+++||    +|++.|||||+||| ||||+|+++|++|||||||+|||....|
T Consensus         1 MKk~IHP~y~~~~v~c~~g~~~~t~st----~~~~~vdv~s~~HP-FyTGkq~~~dt~GRVekF~krfg~~~~k   69 (71)
T 2j01_4            1 MKEGIHPKLVPARIICGCGNVIETYST----KPEIYVEVCSKCHP-FYTGQQRFVDTEGRVERFQRRYGDSYRK   69 (71)
T ss_dssp             CCGGGCCCCTTTTTCTTSCGGGSCSSS----SCCSSCCSCCCCCS-SSCCCSCC--------------------
T ss_pred             CCCCCCCCCEEEEEEECCCCEEEEEEC----CCCEEEEECCCCCC-CCCCCEEEEECCCHHHHHHHHHCCCCCC
T ss_conf             989879997879999899999995441----21289888799877-4828788881445299999886332425

Probab=99.88  E-value=2.9e-26  Score=175.57  Aligned_cols=68  Identities=32%  Similarity=0.358  Sum_probs=59.2

Q ss_pred             CCCCCCCCCEE-EEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCCEECCCEEEE-ECCCHHHHHHHHHHCCCC
Q ss_conf             98878898407-99998799979988765476886999854877897116817897-213648999977602678
Q gi|254780194|r    1 MKKNIHPETHL-ITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKIT-DRGGQVSRFKKRFAGLSI   73 (74)
Q Consensus         1 MKk~IHP~y~~-v~v~~t~g~~~~t~sT~g~~~~~~~vdi~s~~HP~fytgkq~~~-dt~GrveKF~kkfg~~~~   73 (74)
                      ||+||||+|++ +.|.|+||++|.++||.    +++.|||||+||| ||||+|+++ +++||||||++|||+++.
T Consensus        49 ~KKdIHP~y~~~~~V~c~~g~~f~t~STk----~e~~vDIcS~cHP-FYTG~q~~v~~~aGRVeKF~kRfg~l~~  118 (144)
T 3bbo_1           49 RKKELHPEFHEDAKVYCNGELVMTTGGTK----KEYVVDVWSGNHP-FYLGNRSALMVDADQVEKFRKRFAGLSE  118 (144)
T ss_dssp             -CTTTCCCCCHHHHHCSSSCTTTSCSSCS----CSSSCCSSCCCCC-SSSSSSSCCCCCCCCCCCSSCCCCCCSS
T ss_pred             CCCCCCCCCCCCEEEECCCCCEEEEEECC----CCEEEEECCCCCC-EEECCCEEEECCCCHHHHHHHHHCCCCC
T ss_conf             35888989826769990899889970558----7478887588874-2867813786355049999987616230

class: Alpha and beta proteins (a+b)
fold: L28p-like
superfamily: L28p-like
family: Ribosomal protein L31p
domain: Ribosomal protein L31p
species: Escherichia coli [TaxId: 562]

 Score = 85.2 bits (211), Expect = 1e-18
 Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 4/72 (5%)

Query: 1  MKKNIHPETHLITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGGQ 60
          MKK+IHP+   IT   + G   + RST   +   + LD+    H  + G  Q+    GG+
Sbjct: 1  MKKDIHPKYEEITASCSCGNVMKIRSTVGHD---LNLDVCSKCHPFFTGK-QRDVATGGR 56

Query: 61 VSRFKKRFAGLS 72
          V RF KRF    
Sbjct: 57 VDRFNKRFNIPG 68

class: Alpha and beta proteins (a+b)
fold: L28p-like
superfamily: L28p-like
family: Ribosomal protein L31p
domain: Ribosomal protein L31p
species: Thermus thermophilus [TaxId: 274]

 Score = 59.3 bits (144), Expect = 8e-11
 Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 5/54 (9%)

Query: 1  MKKNIHPETHLITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKI 54
          MK+ IHP+     ++   G   +T ST  E    + +++    H  +  G+Q+ 
Sbjct: 1  MKEGIHPKLVPARIICGCGNVIETYSTKPE----IYVEVCSKCHPFYT-GQQRF 49

class: Alpha and beta proteins (a+b)
fold: L28p-like
superfamily: L28p-like
family: Ribosomal protein L31p
domain: Ribosomal protein L31p
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=6.5e-30  Score=195.78  Aligned_cols=70  Identities=36%  Similarity=0.529  Sum_probs=66.7

Q ss_pred             CCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCCEECCCEEEEECCCHHHHHHHHHHCCCCC
Q ss_conf             98878898407999987999799887654768869998548778971168178972136489999776026789
Q gi|254780194|r    1 MKKNIHPETHLITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGGQVSRFKKRFAGLSIE   74 (74)
Q Consensus         1 MKk~IHP~y~~v~v~~t~g~~~~t~sT~g~~~~~~~vdi~s~~HP~fytgkq~~~dt~GrveKF~kkfg~~~~k   74 (74)
                      ||+||||+|++|++.|+||++|.++||++.+   +.|||||+||| ||||+|+++|++|||||||+|||.+++|
T Consensus         1 MKk~IHP~y~~v~~~~s~g~~f~~~sT~~~e---~~vdi~s~~HP-fyTG~q~~~dt~GRVekF~krf~~~~~K   70 (70)
T d1vs6z1           1 MKKDIHPKYEEITASCSCGNVMKIRSTVGHD---LNLDVCSKCHP-FFTGKQRDVATGGRVDRFNKRFNIPGSK   70 (70)
T ss_dssp             CCCTTSCCCCCCBCCCCSSCCCCCBCCCCCC---CCCBCCSSSCC-BCCCCCTTTTTHHHHSCSSTTTTTTSCC
T ss_pred             CCCCCCCCCEEEEEEECCCCEEEEEEEECCC---EEEEECCCCCC-CCCCCEEEEECCCCHHHHHHHHCCCCCC
T ss_conf             9798799998699997899999973684773---88875788887-5929787861467499998766553579

class: Alpha and beta proteins (a+b)
fold: L28p-like
superfamily: L28p-like
family: Ribosomal protein L31p
domain: Ribosomal protein L31p
species: Thermus thermophilus [TaxId: 274]

Probab=99.70  E-value=1.5e-20  Score=140.34  Aligned_cols=50  Identities=24%  Similarity=0.341  Sum_probs=46.4

Q ss_pred             CCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCCEECCCEEEE
Q ss_conf             9887889840799998799979988765476886999854877897116817897
Q gi|254780194|r    1 MKKNIHPETHLITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKIT   55 (74)
Q Consensus         1 MKk~IHP~y~~v~v~~t~g~~~~t~sT~g~~~~~~~vdi~s~~HP~fytgkq~~~   55 (74)
                      |||||||+|++++|.|+||++|.++||.    ++++|||||+||| ||||+|+++
T Consensus         1 MKk~IHP~y~~v~~~cscg~~f~~~ST~----~~~~vdIcs~cHP-FyTG~qk~v   50 (50)
T d2j0141           1 MKEGIHPKLVPARIICGCGNVIETYSTK----PEIYVEVCSKCHP-FYTGQQRFV   50 (50)
T ss_dssp             CCGGGCCCCTTTTTCTTSCGGGSCSSSS----CCSSCCSCCCCCS-SSCCCSCC-
T ss_pred             CCCCCCCCCEEEEEEECCCCEEEECCCC----CCEEEEECCCCCC-CCCCEEEEC
T ss_conf             9887799888899998999999943058----7688888999978-697809839

 Score = 88.6 bits (220), Expect = 2e-19
 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 5/72 (6%)

Query: 1  MKKNIHPETHLITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGGQ 60
          MK+ IHP+     ++   G   +T ST  E    + +++    H  +  G+Q+  D  G+
Sbjct: 1  MKEGIHPKLVPARIICGCGNVIETYSTKPE----IYVEVCSKCHPFYT-GQQRFVDTEGR 55

Query: 61 VSRFKKRFAGLS 72
          V RF++R+    
Sbjct: 56 VERFQRRYGDSY 67

 Score = 82.2 bits (203), Expect = 2e-17
 Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 5/72 (6%)

Query: 1  MKKNIHPETHLITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGGQ 60
          +K+ IHP+     ++   G   +T ST  E    + +++    H  +  G+Q+  D  G+
Sbjct: 27 VKEGIHPKLVPARIICGCGNVIETYSTKPE----IYVEVCSKCHPFYT-GQQRFVDTEGR 81

Query: 61 VSRFKKRFAGLS 72
          V RF++R+    
Sbjct: 82 VERFQRRYGDSY 93

 Score = 79.3 bits (195), Expect = 2e-16
 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 5/73 (6%)

Query: 1   MKKNIHPETH-LITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGG 59
            KK +HPE H    V         T  T KE      +D+   +H  ++G R  +     
Sbjct: 49  RKKELHPEFHEDAKVYCNGELVMTTGGTKKE----YVVDVWSGNHPFYLGNRSALMVDAD 104

Query: 60  QVSRFKKRFAGLS 72
           QV +F+KRFAGLS
Sbjct: 105 QVEKFRKRFAGLS 117

 Score = 71.6 bits (176), Expect = 4e-14
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 5/61 (8%)

Query: 1  MKKNIHPETHLITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGGQ 60
          M+K++HP+     ++       +T ST  E    + +D+    H  W  G ++  D  G+
Sbjct: 1  MQKDLHPKAVPCKIIYQGQVVMETMSTRPE----IHVDVWSGVHPFWT-GEERFLDTEGR 55

Query: 61 V 61
          V
Sbjct: 56 V 56

 Score = 50.4 bits (121), Expect = 9e-08
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 1  MKKNIHPETHLITVVMTDGTQYQTRST 27
          MKK+IHP+   IT   + G   + RST
Sbjct: 1  MKKDIHPKYEEITASCSCGNVMKIRST 27

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 32 GAVMKLDIDPLSHFAWIGGRQKITDRGGQVSRFKKRFAGLS 72
          G  + LD+    H  + G  Q+    GG+V RF KRF    
Sbjct: 1  GHDLNLDVCSKCHPFFTGK-QRDVATGGRVDRFNKRFNIPG 40

Probab=99.93  E-value=1.2e-27  Score=184.71  Aligned_cols=69  Identities=25%  Similarity=0.410  Sum_probs=64.3

Q ss_pred             CCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCCEECCCEEEEECCCHHHHHHHHHHCCCCC
Q ss_conf             98878898407999987999799887654768869998548778971168178972136489999776026789
Q gi|254780194|r    1 MKKNIHPETHLITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGGQVSRFKKRFAGLSIE   74 (74)
Q Consensus         1 MKk~IHP~y~~v~v~~t~g~~~~t~sT~g~~~~~~~vdi~s~~HP~fytgkq~~~dt~GrveKF~kkfg~~~~k   74 (74)
                      ||++|||+|+++++.|+||++|++.||.    |++.|||||+||| ||||+|+++|++|||||||+||+.+..+
T Consensus        27 MKk~IHP~y~~~~v~c~cg~~~~~~sT~----~~i~vdVcs~cHP-FyTG~q~~~dt~GRVekF~krf~~~~~~   95 (97)
T 3f1f_4           27 VKEGIHPKLVPARIICGCGNVIETYSTK----PEIYVEVCSKCHP-FYTGQQRFVDTEGRVERFQRRYGDSYRK   95 (97)
T ss_dssp             ---------CCCEEEETTEEEEECCCSS----CCEEESSCTTC-------------------------------
T ss_pred             CCCCCCCCCEEEEEEECCCCEEEEEECC----CCEEEEECCCCCC-CCCCCEEEEECCCCHHHHHHHHCCCCCC
T ss_conf             5667898878899997899999973525----6589887689877-4818787871567399999987232324

Probab=99.93  E-value=7.5e-29  Score=191.82  Aligned_cols=69  Identities=26%  Similarity=0.423  Sum_probs=64.9

Q ss_pred             CCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCCEECCCEEEEECCCHHHHHHHHHHCCCCC
Q ss_conf             98878898407999987999799887654768869998548778971168178972136489999776026789
Q gi|254780194|r    1 MKKNIHPETHLITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGGQVSRFKKRFAGLSIE   74 (74)
Q Consensus         1 MKk~IHP~y~~v~v~~t~g~~~~t~sT~g~~~~~~~vdi~s~~HP~fytgkq~~~dt~GrveKF~kkfg~~~~k   74 (74)
                      ||+||||+|++++|.|+||++|+++||.    |+|.|||||+||| ||||+|+++|++|||||||+||+.+..+
T Consensus         1 MKk~IHP~y~~v~~~ct~g~~f~~~ST~----~~i~vdv~s~~HP-fyTG~q~~~~~~GRv~kF~krf~~~~~~   69 (71)
T 2j01_4            1 MKEGIHPKLVPARIICGCGNVIETYSTK----PEIYVEVCSKCHP-FYTGQQRFVDTEGRVERFQRRYGDSYRK   69 (71)
T ss_dssp             CCGGGCCCCTTTTTCTTSCGGGSCSSSS----CCSSCCSCCCCCS-SSCCCSCC--------------------
T ss_pred             CCCCCCCCCEEEEEEECCCCEEEECCCC----CEEEEEECCCCCC-CCCCCEEEEECCCCHHHHHHHHCCCCCC
T ss_conf             9887799878899998999889953026----1299987689877-4828788882467599999877253425

Probab=99.89  E-value=2.1e-23  Score=159.61  Aligned_cols=56  Identities=23%  Similarity=0.378  Sum_probs=53.8

Q ss_pred             CCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCCEECCCEEEEECCCHH
Q ss_conf             9887889840799998799979988765476886999854877897116817897213648
Q gi|254780194|r    1 MKKNIHPETHLITVVMTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDRGGQV   61 (74)
Q Consensus         1 MKk~IHP~y~~v~v~~t~g~~~~t~sT~g~~~~~~~vdi~s~~HP~fytgkq~~~dt~Grv   61 (74)
                      |||+|||+|+++.|.|+||++|.++||.    ++++|||||+||| ||||+|+++|++|||
T Consensus         1 MKk~IHP~y~~v~v~c~cg~~~~~~ST~----~~~~vdvcs~cHP-FyTG~q~~vdt~GRV   56 (56)
T 1nkw_Y            1 MQKDLHPKAVPCKIIYQGQVVMETMSTR----PEIHVDVWSGVHP-FWTGEERFLDTEGRV   56 (56)
T ss_pred             CCCCCCCCCEEEEEEECCCCEEEECCCC----CCEEEEECCCCCC-CEECCEEEEECCCCH
T ss_conf             9887799988899998999899966345----4589988689877-282888887247549

Probab=99.86  E-value=1.7e-25  Score=171.97  Aligned_cols=68  Identities=32%  Similarity=0.334  Sum_probs=60.8

Q ss_pred             CCCCCCCCCEEEEEE-ECCCCEEEEEEEECCCCCEEEEEECCCCCCCEECCCEEEEEC-CCHHHHHHHHHHCCCC
Q ss_conf             988788984079999-879997998876547688699985487789711681789721-3648999977602678
Q gi|254780194|r    1 MKKNIHPETHLITVV-MTDGTQYQTRSTWKEEGAVMKLDIDPLSHFAWIGGRQKITDR-GGQVSRFKKRFAGLSI   73 (74)
Q Consensus         1 MKk~IHP~y~~v~v~-~t~g~~~~t~sT~g~~~~~~~vdi~s~~HP~fytgkq~~~dt-~GrveKF~kkfg~~~~   73 (74)
                      ||++|||+|++++++ |+||++|.++||.    |+|+|||||.||| ||||+|+.+++ +||||||++|||++..
T Consensus        49 mKk~IHP~y~~~~~v~~s~g~~f~~~ST~----~~i~idv~s~~HP-fytG~~~~~~~~aGRv~kF~kRf~~~~~  118 (144)
T 3bbo_1           49 RKKELHPEFHEDAKVYCNGELVMTTGGTK----KEYVVDVWSGNHP-FYLGNRSALMVDADQVEKFRKRFAGLSE  118 (144)
T ss_dssp             -CTTTCCCCCHHHHHCSSSCTTTSCSSCS----CSSSCCSSCCCCC-SSSSSSSCCCCCCCCCCCSSCCCCCCSS
T ss_pred             CCCCCCCCCCCCEEEECCCCCEEEEEECC----CCEEEEECCCCCC-EEECCEEEEECCCCHHHHHHHHHCCCCH
T ss_conf             45777989825539987999789972457----7368877389875-0767704885355339999988615001

Probab=99.52  E-value=1.7e-16  Score=118.82  Aligned_cols=41  Identities=32%  Similarity=0.502  Sum_probs=38.4

Q ss_pred             CEEEEEECCCCCCCEECCCEEEEECCCHHHHHHHHHHCCCCC
Q ss_conf             869998548778971168178972136489999776026789
Q gi|254780194|r   33 AVMKLDIDPLSHFAWIGGRQKITDRGGQVSRFKKRFAGLSIE   74 (74)
Q Consensus        33 ~~~~vdi~s~~HP~fytgkq~~~dt~GrveKF~kkfg~~~~k   74 (74)
                      .+|.|||||+||| ||||+|+++|++||||||++||+.++.|
T Consensus         2 ~~~~vdv~s~~HP-fyTG~q~~~d~~GrV~kF~kky~~~~~k   42 (42)
T 1vs6_Z            2 HDLNLDVCSKCHP-FFTGKQRDVATGGRVDRFNKRFNIPGSK   42 (42)
T ss_dssp             CCCCCBCCSSSCC-BCCCCCTTTTTHHHHSCSSTTTTTTSCC
T ss_pred             CCEEEEECCCCCC-CCCCCEEEEECCCCHHHHHHHHCCCCCC
T ss_conf             7289987799887-4918787871467599998766553579

Probab=98.77  E-value=4.9e-10  Score=80.54  Aligned_cols=28  Identities=43%  Similarity=0.519  Sum_probs=27.1

Q ss_pred             CCCCCCCCCEEEEEEECCCCEEEEEEEE
Q ss_conf             9887889840799998799979988765
Q gi|254780194|r    1 MKKNIHPETHLITVVMTDGTQYQTRSTW   28 (74)
Q Consensus         1 MKk~IHP~y~~v~v~~t~g~~~~t~sT~   28 (74)
                      ||+||||+|+++.|.|+||++|+|+||+
T Consensus         1 MK~~IHP~Y~~~~v~CsCGn~f~TrST~   28 (28)
T 1vs6_Z            1 MKKDIHPKYEEITASCSCGNVMKIRSTV   28 (28)
T ss_dssp             CCCTTSCCCCCCBCCCCSSCCCCCBCCC
T ss_pred             CCCCCCCCCEEEEEEECCCCEEEEEEEE
T ss_conf             9798799998799997899999981695

Probab=96.82  E-value=0.00022  Score=47.14  Aligned_cols=27  Identities=15%  Similarity=0.147  Sum_probs=22.6

Q ss_pred             CCCCCCCCCEEEEEEE-CCCCEEEEEEE
Q ss_conf             9887889840799998-79997998876
Q gi|254780194|r    1 MKKNIHPETHLITVVM-TDGTQYQTRST   27 (74)
Q Consensus         1 MKk~IHP~y~~v~v~~-t~g~~~~t~sT   27 (74)
                      ||+||||+|++|++.. +++..|.+...
T Consensus         1 mk~~ihP~y~~v~f~d~~~~~~~~~~MK   28 (97)
T 3f1f_4            1 MPLGVHPLYTKRWLAHGQDRAKKEANVK   28 (97)
T ss_dssp             ----------------------------
T ss_pred             CCCCCCCCHHHHHHHCCCCCCCCCCCCC
T ss_conf             9877686131556523754442345656