254780211

254780211

hypothetical protein CLIBASIA_00480

GeneID in NCBI database:8209192Locus tag:CLIBASIA_00480
Protein GI in NCBI database:254780211Protein Accession:YP_003064624.1
Gene range:-(99917, 100087)Protein Length:56aa
Gene description:hypothetical protein
COG prediction:none
KEGG prediction:hypothetical protein
SEED prediction:not defined as a protein in SEED
Pathway involved in KEGG:not defined
Subsystem involved in KEGG:not defined
sequencesequence profile

Prediction of Local Sequence Properties

SourceSummaryResult
scaler
NCBI Databasesequence
PSIPREDsecondary structure
SSPROsecondary structure
DISEMBLcoil and loop
DISEMBLflexible loop
SEGlow complexity
DISOPREDdisordered
DISEMBLmissing residues
DISPROdisordered
TMHMMnone TM-Helix
TOPPREDnone TM-Helix
HMMTOPnone TM-Helix
MEMSATnone TM-Helix
MEMSAT_SVMnone TM-Helix
PHOBIUSnone TM-Helix
SignalP_HMMno
SignalP_NNno
COILScoiled coil
  
--------10--------20--------30--------40--------50------
MIFSQIEGELFLKTALVVVRERTECPIHRYFKIAVFIKQYTNTAFGKSKCKRGRGK
cccHHcccHHHEEEEEEEEEEcccccHHHHHEEHHHHHHHHccHHHHHHHHHcccc
ccccHHHHHHHHHHHHHHHHHcccccHHHHHHEEEEEEHccccccccccccccccc
MIFSQIEGELFLKTALVVVRErtecpihrYFKIAVFIKQYtntafgkskckrgrgk
mifsqiegelflKTALVVVRERTECPIHRYFKIAVFIKQytntafgkskckrgrgk
MIFSQIEGELFLKTALVVVRERTECPIHRYFKIAVFIKQYTNTAFGKSKCKRGRGK
***SQIEGELFLKTALVVVRERTECPIHRYFKIAVFIKQYTNTAFG***C******
MIFSQIEGELFLKTALVVVRERTECPIHRYFKIAVFIKQYTNTAFG**********
MIFSQIEGELFLKTALVVVRERTECPIHRYFKIAVFIKQYTNTAFG**********
oooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiii
iiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MIFSQIEGELFLKTALVVVRERTECPIHRYFKIAVFIKQYTNTAFGKSKCKRGRGK

Close Homologs Detected by BLAST or PSI-BLAST

Homolog within the Genome Detected by BLAST

No hits with e-value below 0.05

Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations

No hits with e-value below 0.005 within the first 2 iteration


Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch

Conserved Domains in CDD Database Detected by RPS-BLAST

No hit with e-value below 0.005

Conserved Domains in CDD Database Detected by HHsearch

No hit with probability above 90.00


Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch

Homologous Structures Detected by PSI-BLAST against Nonredundant Database

No homologous structure with e-value below 0.005

Homologous Structures in PDB70 Database Detected by RPS-BLAST

No hit with e-value below 0.005

Homologous Structures in PDB70 Database Detected by HHsearch

No hit with probability above 90.00


Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch

Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST

No hit with e-value below 0.005

Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch

No hit with probability above 90.00

Homologous Domains in MMDB70 Database Detected by RPS-BLAST

No hit with e-value below 0.005

Homologous Domains in MMDB70 Database Detected by HHsearch

No hit with probability higher than 90.00