254780214
metal-dependent hydrolase protein
GeneID in NCBI database: | 8209195 | Locus tag: | CLIBASIA_00495 |
Protein GI in NCBI database: | 254780214 | Protein Accession: | YP_003064627.1 |
Gene range: | -(101444, 102259) | Protein Length: | 271aa |
Gene description: | metal-dependent hydrolase protein | ||
COG prediction: | [R] Metal-dependent hydrolases of the beta-lactamase superfamily I | ||
KEGG prediction: | metal-dependent hydrolase protein; K06167 PhnP protein | ||
SEED prediction: | Metal-dependent hydrolases of the beta-lactamase superfamily I; PhnP protein | ||
Pathway involved in KEGG: | not defined | ||
Subsystem involved in SEED: | Beta-lactamase | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 271 | metal-dependent hydrolase protein [Candidatus Liberibac | |||
315122343 | 269 | metal-dependent hydrolase protein [Candidatus Liberibac | 1 | 1e-127 | |
86357773 | 272 | metal-dependent hydrolase protein [Rhizobium etli CFN 4 | 1 | 1e-83 | |
116252218 | 272 | hypothetical protein RL2471 [Rhizobium leguminosarum bv | 1 | 6e-83 | |
190891832 | 271 | probable metal-dependent hydrolase protein [Rhizobium e | 1 | 7e-83 | |
209549394 | 274 | beta-lactamase [Rhizobium leguminosarum bv. trifolii WS | 1 | 1e-82 | |
241204711 | 274 | beta-lactamase [Rhizobium leguminosarum bv. trifolii WS | 1 | 2e-82 | |
222148594 | 272 | metal dependent hydrolase [Agrobacterium vitis S4] Leng | 1 | 9e-82 | |
218463184 | 271 | probable metal-dependent hydrolase protein [Rhizobium e | 1 | 6e-81 | |
159184781 | 274 | metal dependent hydrolase [Agrobacterium tumefaciens st | 1 | 1e-78 | |
325292847 | 276 | metal dependent hydrolase [Agrobacterium sp. H13-3] Len | 1 | 3e-78 |
>gi|315122343|ref|YP_004062832.1| metal-dependent hydrolase protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 269 | Back alignment and organism information |
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Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust. Identities = 221/270 (81%), Positives = 242/270 (89%), Gaps = 1/270 (0%) Query: 1 MKDYYHFTILGCGASLGVPRITGDWGACDPTNPKNRRTRSSLKISRVSERGSNTTVIVDT 60 MKD+Y+FTILGC AS GVPRITGDWG CDP NPKNRRTRSSLK+SRVSERG +TTVI+DT Sbjct: 1 MKDFYYFTILGCSASPGVPRITGDWGLCDPKNPKNRRTRSSLKVSRVSERGGDTTVIIDT 60 Query: 61 GPDFYMQVLREQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDCMKHLFE 120 GPDFYMQ+LRE+VLSIDAVLYTH HADH+HGIDGLRGYFL+QK PIDVYAAPDCM++L Sbjct: 61 GPDFYMQMLREKVLSIDAVLYTHEHADHVHGIDGLRGYFLQQKHPIDVYAAPDCMENLVN 120 Query: 121 SFRYCFKALDDRTYPPIVNPIVIENNDVPICMKSAGGVIEAIPILQQHGRISSLGFRFGN 180 SF YCFKA + +Y PI NP +IE DVPI +K AGGVIEAIPILQ+HG+ISSLGFRF N Sbjct: 121 SFGYCFKAPEGSSYLPIANPRIIE-KDVPISVKGAGGVIEAIPILQRHGKISSLGFRFSN 179 Query: 181 VAYCTDVNAFPAESLEKLQNLDFLIIDALKNGLHSSHFSLSESLKKIELINPKNAILTHM 240 VAYCTDVN+FP ESLEKLQNLDFLIIDAL+NGLH SHFSLSESLKKI+LINPKNAILTHM Sbjct: 180 VAYCTDVNSFPDESLEKLQNLDFLIIDALRNGLHGSHFSLSESLKKIDLINPKNAILTHM 239 Query: 241 HVDLDYDMVLKSTPSRVVPAFDGMQFSSPI 270 HVDLDYD V +STPSRVVPAFDGM F S I Sbjct: 240 HVDLDYDKVFRSTPSRVVPAFDGMHFKSLI 269 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|86357773|ref|YP_469665.1| metal-dependent hydrolase protein [Rhizobium etli CFN 42] Length = 272 | Back alignment and organism information |
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>gi|116252218|ref|YP_768056.1| hypothetical protein RL2471 [Rhizobium leguminosarum bv. viciae 3841] Length = 272 | Back alignment and organism information |
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>gi|190891832|ref|YP_001978374.1| probable metal-dependent hydrolase protein [Rhizobium etli CIAT 652] Length = 271 | Back alignment and organism information |
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>gi|209549394|ref|YP_002281311.1| beta-lactamase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 274 | Back alignment and organism information |
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>gi|241204711|ref|YP_002975807.1| beta-lactamase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 274 | Back alignment and organism information |
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>gi|222148594|ref|YP_002549551.1| metal dependent hydrolase [Agrobacterium vitis S4] Length = 272 | Back alignment and organism information |
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>gi|218463184|ref|ZP_03503275.1| probable metal-dependent hydrolase protein [Rhizobium etli Kim 5] Length = 271 | Back alignment and organism information |
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>gi|159184781|ref|NP_354500.2| metal dependent hydrolase [Agrobacterium tumefaciens str. C58] Length = 274 | Back alignment and organism information |
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>gi|325292847|ref|YP_004278711.1| metal dependent hydrolase [Agrobacterium sp. H13-3] Length = 276 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 271 | metal-dependent hydrolase protein [Candidatus Liberibac | ||
PRK02113 | 252 | PRK02113, PRK02113, putative hydrolase; Provisional | 7e-41 | |
PRK11244 | 250 | PRK11244, phnP, carbon-phosphorus lyase complex accesso | 6e-13 | |
COG1234 | 292 | COG1234, ElaC, Metal-dependent hydrolases of the beta-l | 1e-07 | |
COG1235 | 269 | COG1235, PhnP, Metal-dependent hydrolases of the beta-l | 2e-37 | |
smart00849 | 183 | smart00849, Lactamase_B, Metallo-beta-lactamase superfa | 4e-10 | |
pfam00753 | 148 | pfam00753, Lactamase_B, Metallo-beta-lactamase superfam | 1e-07 | |
COG0491 | 252 | COG0491, GloB, Zn-dependent hydrolases, including glyox | 6e-06 | |
COG0595 | 555 | COG0595, COG0595, Predicted hydrolase of the metallo-be | 1e-04 | |
TIGR03307 | 238 | TIGR03307, PhnP, phosphonate metabolism protein PhnP | 3e-09 | |
TIGR03413 | 248 | TIGR03413, GSH_gloB, hydroxyacylglutathione hydrolase | 8e-07 | |
COG1237 | 259 | COG1237, COG1237, Metal-dependent hydrolases of the bet | 2e-05 | |
PRK02126 | 334 | PRK02126, PRK02126, ribonuclease Z; Provisional | 0.004 | |
TIGR02651 | 299 | TIGR02651, RNase_Z, ribonuclease Z | 9e-06 |
>gnl|CDD|179371 PRK02113, PRK02113, putative hydrolase; Provisional | Back alignment and domain information |
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>gnl|CDD|183052 PRK11244, phnP, carbon-phosphorus lyase complex accessory protein; Provisional | Back alignment and domain information |
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>gnl|CDD|31427 COG1234, ElaC, Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only] | Back alignment and domain information |
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>gnl|CDD|31428 COG1235, PhnP, Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only] | Back alignment and domain information |
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>gnl|CDD|129082 smart00849, Lactamase_B, Metallo-beta-lactamase superfamily | Back alignment and domain information |
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>gnl|CDD|144377 pfam00753, Lactamase_B, Metallo-beta-lactamase superfamily | Back alignment and domain information |
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>gnl|CDD|30837 COG0491, GloB, Zn-dependent hydrolases, including glyoxylases [General function prediction only] | Back alignment and domain information |
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>gnl|CDD|30940 COG0595, COG0595, Predicted hydrolase of the metallo-beta-lactamase superfamily [General function prediction only] | Back alignment and domain information |
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>gnl|CDD|163212 TIGR03307, PhnP, phosphonate metabolism protein PhnP | Back alignment and domain information |
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>gnl|CDD|163252 TIGR03413, GSH_gloB, hydroxyacylglutathione hydrolase | Back alignment and domain information |
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>gnl|CDD|31430 COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only] | Back alignment and domain information |
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>gnl|CDD|179375 PRK02126, PRK02126, ribonuclease Z; Provisional | Back alignment and domain information |
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>gnl|CDD|162962 TIGR02651, RNase_Z, ribonuclease Z | Back alignment and domain information |
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Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 271 | metal-dependent hydrolase protein [Candidatus Liberibac | ||
PRK02113 | 252 | putative hydrolase; Provisional | 100.0 | |
TIGR03307 | 249 | PhnP phosphonate metabolism protein PhnP. This family o | 100.0 | |
PRK11244 | 250 | phnP carbon-phosphorus lyase complex accessory protein; | 100.0 | |
PRK05184 | 302 | pyrroloquinoline quinone biosynthesis protein PqqB; Pro | 100.0 | |
PRK00055 | 259 | ribonuclease Z; Reviewed | 100.0 | |
TIGR02651 | 327 | RNase_Z ribonuclease Z; InterPro: IPR013471 All tRNA mo | 100.0 | |
COG1234 | 292 | ElaC Metal-dependent hydrolases of the beta-lactamase s | 100.0 | |
COG1235 | 269 | PhnP Metal-dependent hydrolases of the beta-lactamase s | 100.0 | |
TIGR02108 | 314 | PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B; Inter | 100.0 | |
KOG2121 | 746 | consensus | 99.98 | |
TIGR02649 | 304 | true_RNase_BN ribonuclease BN; InterPro: IPR013469 Prot | 99.95 | |
PRK00685 | 228 | metal-dependent hydrolase; Provisional | 99.65 | |
pfam02112 | 323 | PDEase_II cAMP phosphodiesterases class-II. | 99.49 | |
PRK04286 | 294 | hypothetical protein; Provisional | 99.35 | |
COG2248 | 304 | Predicted hydrolase (metallo-beta-lactamase superfamily | 98.89 | |
PRK02126 | 334 | ribonuclease Z; Provisional | 100.0 | |
TIGR02650 | 277 | RNase_Z_T_toga ribonuclease Z, Thermotoga type; InterPr | 99.58 | |
COG1237 | 259 | Metal-dependent hydrolases of the beta-lactamase superf | 99.49 | |
PRK11709 | 355 | putative L-ascorbate 6-phosphate lactonase; Provisional | 98.56 | |
COG2333 | 293 | ComEC Predicted hydrolase (metallo-beta-lactamase super | 98.49 | |
KOG1361 | 481 | consensus | 98.38 | |
COG0595 | 555 | mRNA degradation ribonucleases J1/J2 (metallo-beta-lact | 99.67 | |
TIGR03675 | 630 | arCOG00543 arCOG01782 universal archaeal KH-domain/beta | 99.67 | |
COG1236 | 427 | YSH1 Predicted exonuclease of the beta-lactamase fold i | 99.49 | |
COG1782 | 637 | Predicted metal-dependent RNase, consists of a metallo- | 99.4 | |
KOG1136 | 501 | consensus | 98.96 | |
KOG1137 | 668 | consensus | 98.6 | |
smart00849 | 183 | Lactamase_B Metallo-beta-lactamase superfamily. Apart f | 99.3 | |
TIGR03413 | 248 | GSH_gloB hydroxyacylglutathione hydrolase. Members of t | 98.84 | |
PRK10241 | 251 | hydroxyacylglutathione hydrolase; Provisional | 98.8 | |
KOG1135 | 764 | consensus | 98.76 | |
COG0491 | 252 | GloB Zn-dependent hydrolases, including glyoxylases [Ge | 98.61 | |
COG0426 | 388 | FpaA Uncharacterized flavoproteins [Energy production a | 98.22 | |
PRK05452 | 479 | anaerobic nitric oxide reductase flavorubredoxin; Provi | 97.55 | |
PRK11921 | 395 | metallo-beta-lactamase/flavodoxin domain-containing pro | 97.45 | |
COG2220 | 258 | Predicted Zn-dependent hydrolases of the beta-lactamase | 99.11 | |
pfam00753 | 148 | Lactamase_B Metallo-beta-lactamase superfamily. | 99.1 | |
COG2015 | 655 | Alkyl sulfatase and related hydrolases [Secondary metab | 96.62 | |
KOG0814 | 237 | consensus | 94.46 | |
KOG3592 | 934 | consensus | 92.6 | |
TIGR00649 | 593 | MG423 conserved hypothetical protein; InterPro: IPR0046 | 99.05 | |
PRK11539 | 754 | hypothetical protein; Provisional | 98.82 | |
COG5212 | 356 | PDE1 Low-affinity cAMP phosphodiesterase [Signal transd | 98.67 | |
KOG3798 | 343 | consensus | 96.95 | |
KOG0813 | 265 | consensus | 97.76 |
>PRK02113 putative hydrolase; Provisional | Back alignment and domain information |
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>TIGR03307 PhnP phosphonate metabolism protein PhnP | Back alignment and domain information |
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>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional | Back alignment and domain information |
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>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional | Back alignment and domain information |
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>PRK00055 ribonuclease Z; Reviewed | Back alignment and domain information |
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>TIGR02651 RNase_Z ribonuclease Z; InterPro: IPR013471 All tRNA molecules are synthesised as long precursors with extra sequence at both the 5' and 3' ends, which undergo several processing steps to form the mature tRNA molecule | Back alignment and domain information |
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>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only] | Back alignment and domain information |
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>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only] | Back alignment and domain information |
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>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B; InterPro: IPR011842 This entry describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ) | Back alignment and domain information |
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>KOG2121 consensus | Back alignment and domain information |
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>TIGR02649 true_RNase_BN ribonuclease BN; InterPro: IPR013469 Proteins in this entry include ribonuclease BN of Escherichia coli (strain K-12) and closely related proteins believed to be equivalent in function | Back alignment and domain information |
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>PRK00685 metal-dependent hydrolase; Provisional | Back alignment and domain information |
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>pfam02112 PDEase_II cAMP phosphodiesterases class-II | Back alignment and domain information |
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>PRK04286 hypothetical protein; Provisional | Back alignment and domain information |
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>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only] | Back alignment and domain information |
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>PRK02126 ribonuclease Z; Provisional | Back alignment and domain information |
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>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type; InterPro: IPR013470 All tRNA molecules are synthesised as long precursors with extra sequence at both the 5' and 3' ends, which undergo several processing steps to form the mature tRNA molecule | Back alignment and domain information |
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>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only] | Back alignment and domain information |
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>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional | Back alignment and domain information |
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>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only] | Back alignment and domain information |
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>KOG1361 consensus | Back alignment and domain information |
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>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair] | Back alignment and domain information |
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>TIGR03675 arCOG00543 arCOG01782 universal archaeal KH-domain/beta-lactamase-domain protein | Back alignment and domain information |
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>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only] | Back alignment and domain information |
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>KOG1136 consensus | Back alignment and domain information |
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>KOG1137 consensus | Back alignment and domain information |
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>smart00849 Lactamase_B Metallo-beta-lactamase superfamily | Back alignment and domain information |
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>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase | Back alignment and domain information |
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>PRK10241 hydroxyacylglutathione hydrolase; Provisional | Back alignment and domain information |
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>KOG1135 consensus | Back alignment and domain information |
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>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only] | Back alignment and domain information |
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>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion] | Back alignment and domain information |
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>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional | Back alignment and domain information |
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>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional | Back alignment and domain information |
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>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only] | Back alignment and domain information |
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>pfam00753 Lactamase_B Metallo-beta-lactamase superfamily | Back alignment and domain information |
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>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
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>KOG0814 consensus | Back alignment and domain information |
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>KOG3592 consensus | Back alignment and domain information |
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>TIGR00649 MG423 conserved hypothetical protein; InterPro: IPR004613 This is a family of conserved hypothetical proteins, the members of which contain an ATP-binding domain at the N-terminal end of the protein | Back alignment and domain information |
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>PRK11539 hypothetical protein; Provisional | Back alignment and domain information |
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>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms] | Back alignment and domain information |
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>KOG3798 consensus | Back alignment and domain information |
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>KOG0813 consensus | Back alignment and domain information |
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Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
Identity | Alignment graph | Length | Definition | E-value |
Target | 271 | metal-dependent hydrolase protein [Candidatus Liberibac | ||
3md7_A | 293 | Crystal Structure Of A Beta-Lactamase-Like Protein | 2e-63 | |
3py6_A | 274 | Crystal Structure Of A Beta-Lactamase-Like Protein | 5e-63 | |
3g1p_A | 258 | Crystals Structure Of Phnp From E.Coli K-12 Length | 2e-19 | |
3jxp_A | 321 | Crystal Structure Of The Coenzyme Pqq Synthesis Pro | 8e-14 | |
1xto_A | 311 | Crystal Structure Of The Coenzyme Pqq Synthesis Pro | 2e-12 | |
2cbn_A | 306 | Crystal Structure Of Zipd From Escherichia Coli Len | 9e-09 | |
2fk6_A | 320 | Crystal Structure Of Rnase ZTRNA(THR) COMPLEX Lengt | 3e-08 | |
1y44_A | 320 | Crystal Structure Of Rnase Z Length = 320 | 1e-06 | |
1zkp_A | 268 | 1.5a Resolution Crystal Structure Of A Metallo Beta | 2e-08 | |
1ww1_A | 280 | Crystal Structure Of Trnase Z From Thermotoga Marit | 5e-04 |
>gi|294979848|pdb|3MD7|A Chain A, Crystal Structure Of A Beta-Lactamase-Like Protein Bound To Gmp From Brucella Melitensis Length = 293 | Back alignment and structure |
Score = 246 bits (628), Expect = 2e-63, Method: Composition-based stats. Identities = 139/269 (51%), Positives = 183/269 (68%), Gaps = 1/269 (0%) Query: 2 KDYYHFTILGCGASLGVPRITGDWGACDPTNPKNRRTRSSLKISRVSERGSNTTVIVDTG 61 ++ FT+LGCG+S GVPRI GDWG CDP NPKNRR R+SL + R G+NT V++DTG Sbjct: 26 RNCLRFTLLGCGSSPGVPRINGDWGKCDPKNPKNRRRRASLLVERYDAEGNNTVVVIDTG 85 Query: 62 PDFYMQVLREQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDCMKHLFES 121 PDF MQ++ V +DA +YTHPHADHIHGID LR Y + R +DVYA L+++ Sbjct: 86 PDFRMQMIDSGVHMLDAAVYTHPHADHIHGIDDLRTYVVDNGRLMDVYANRLTRNRLYDT 145 Query: 122 FRYCFKALDDRTYPPIVNPIVIENNDVPICMKSAGGVIEAIPILQQHGRISSLGFRFGNV 181 F YCF+ +YPPI++ I + P ++ AGG I P Q HG I SLGFR G+V Sbjct: 146 FGYCFETPVGSSYPPILSMHDI-APETPFSIEGAGGAIRFEPFSQVHGDIESLGFRIGSV 204 Query: 182 AYCTDVNAFPAESLEKLQNLDFLIIDALKNGLHSSHFSLSESLKKIELINPKNAILTHMH 241 YCTDV+AFP +SL+ +++ D LII AL+ H SHFSL E+L+ IE ++PK AILTHMH Sbjct: 205 VYCTDVSAFPEQSLQYIKDADVLIIGALQYRPHPSHFSLGEALEWIEKLSPKRAILTHMH 264 Query: 242 VDLDYDMVLKSTPSRVVPAFDGMQFSSPI 270 V LDY+ V++ TP V P +DG++F + Sbjct: 265 VPLDYETVMRETPHHVEPGYDGLRFEVAV 293 |
>gi|315364798|pdb|3PY6|A Chain A, Crystal Structure Of A Beta-Lactamase-Like Protein From Brucella Melitensis Bound To Gmp Length = 274 | Back alignment and structure |
>gi|224510880|pdb|3G1P|A Chain A, Crystals Structure Of Phnp From E.Coli K-12 Length = 258 | Back alignment and structure |
>gi|307568135|pdb|3JXP|A Chain A, Crystal Structure Of The Coenzyme Pqq Synthesis Protein (Pqqb) From Pseudomonas Putida Length = 321 | Back alignment and structure |
>gi|56967240|pdb|1XTO|A Chain A, Crystal Structure Of The Coenzyme Pqq Synthesis Protein (Pqqb) From Pseudomonas Putida, Northeast Structural Genomics Target Ppr6 Length = 311 | Back alignment and structure |
>gi|90109091|pdb|2CBN|A Chain A, Crystal Structure Of Zipd From Escherichia Coli Length = 306 | Back alignment and structure |
>gi|93279549|pdb|2FK6|A Chain A, Crystal Structure Of Rnase ZTRNA(THR) COMPLEX Length = 320 | Back alignment and structure |
>gi|60594108|pdb|1Y44|A Chain A, Crystal Structure Of Rnase Z Length = 320 | Back alignment and structure |
>gi|71042373|pdb|1ZKP|A Chain A, 1.5a Resolution Crystal Structure Of A Metallo Beta Lactamase Family Protein, The Elac Homolgue Of Bacillus Anthracis, A Putative Ribonuclease Length = 268 | Back alignment and structure |
gi|61680268|pdb|1WW1|A Chain A, Crystal Structure Of Trnase Z From Thermotoga Maritima Length = 280 | Back alignment and structure |
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 271 | metal-dependent hydrolase protein [Candidatus Liberibac | ||
3md7_A | 293 | Beta-lactamase-like; ssgcid, hydrolase, structural geno | 5e-58 | |
3jxp_A | 321 | Coenzyme PQQ synthesis protein B; alpha-beta protein, P | 2e-38 | |
1xto_A | 311 | Coenzyme PQQ synthesis protein B; alpha-beta protein, n | 4e-29 | |
3g1p_A | 258 | Protein PHNP; C-P lyase, phosphodiesterase, phosphonate | 5e-29 | |
1zkp_A | 268 | Hypothetical protein BA1088; zinc binding protein, stru | 2e-13 | |
1y44_A | 320 | Ribonuclease Z; zinc-dependent metal hydrolase; HET: ME | 1e-12 | |
2cbn_A | 306 | Ribonuclease Z; phosphodiesterase beta lactamase tRNAse | 8e-08 | |
2wyl_A | 360 | L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59 | 3e-06 | |
3h3e_A | 267 | Uncharacterized protein TM1679; structural genomics, su | 1e-29 | |
2p4z_A | 284 | Metal-dependent hydrolases of the beta-lactamase superf | 4e-14 | |
2bib_A | 547 | CBPE, teichoic acid phosphorylcholine esterase/ choline | 9e-08 | |
3bv6_A | 379 | Metal-dependent hydrolase; metallo protein, beta-lactam | 1e-04 | |
3kl7_A | 235 | Putative metal-dependent hydrolase; structural genomics | 2e-04 | |
1ycg_A | 398 | Nitric oxide reductase; DIIRON site, oxidoreductase; HE | 6e-04 | |
2fhx_A | 246 | SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiot | 0.002 | |
2e7y_A | 280 | TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, struc | 1e-06 | |
2zdf_A | 431 | Metallo-beta-lactamase superfamily protein; metallo bet | 1e-05 | |
2xf4_A | 210 | Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salm | 1e-05 | |
1k07_A | 263 | FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alph | 5e-05 | |
1jjt_A | 228 | IMP-1 metallo beta-lactamase; metallo-beta-lactamase in | 2e-04 | |
2i7t_A | 459 | Cleavage and polyadenylation specificity factor 73 kDa | 2e-04 | |
2az4_A | 429 | Hypothetical protein EF2904; structural genomics, PSI, | 6e-04 | |
1m2x_A | 223 | Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fol | 7e-04 | |
1p9e_A | 331 | Methyl parathion hydrolase; Zn containing; 2.40A {Pseud | 0.001 | |
3adr_A | 261 | Putative uncharacterized protein ST1585; quorum sensing | 3e-06 | |
2p18_A | 311 | Glyoxalase II; metalloprotein, beta sandwich, alpha-hel | 2e-04 | |
3bk2_A | 562 | RNAse J, metal dependent hydrolase; endoribonuclease, e | 3e-04 | |
3iog_A | 227 | Beta-lactamase; hydrolase, antibiotic resistance, metal | 4e-04 | |
2i7x_A | 717 | Protein CFT2; polyadenylation, metallo-B-lactamase, PRE | 8e-04 | |
3af5_A | 651 | Putative uncharacterized protein PH1404; archaeal CPSF, | 0.004 | |
2cfu_A | 658 | SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1 | 8e-06 | |
1e5d_A | 402 | Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DII | 9e-06 | |
2q9u_A | 414 | A-type flavoprotein; flavodoxin like, beta lactamase li | 2e-05 | |
2vw8_A | 303 | PA1000, PQSE; quinolone signal response protein, signal | 2e-05 | |
2whg_A | 230 | VIM-4 metallo-beta-lactamase; hydrolase, alpha-beta/BET | 3e-05 | |
1qh5_A | 260 | Glyoxalase II, protein (hydroxyacylglutathione hydrolas | 3e-05 | |
1ko3_A | 230 | VIM-2 metallo-beta-lactamase; alpha-beta/BETA-alpha fol | 7e-05 | |
1vme_A | 410 | Flavoprotein; TM0755, structural genomics, JCSG, protei | 1e-04 | |
2ohh_A | 404 | Type A flavoprotein FPRA; beta-lactamase like domain, f | 2e-04 | |
3l6n_A | 219 | Metallo-beta-lactamase; zinc, hydolase, antibiotics res | 3e-04 | |
2xr1_A | 640 | Cleavage and polyadenylation specificity factor 1 subun | 0.002 | |
1ztc_A | 221 | Hypothetical protein TM0894; structural genomics, PSI, | 0.004 |
>3md7_A Beta-lactamase-like; ssgcid, hydrolase, structural genomics, seattle structural genomics center for infectious disease; HET: 5GP TLA; 1.27A {Brucella melitensis biovar abortus} Length = 293 | Back alignment and structure |
---|
Score = 219 bits (559), Expect = 5e-58 Identities = 139/267 (52%), Positives = 181/267 (67%), Gaps = 5/267 (1%) Query: 1 MKDYYHFTILGCGASLGVPRITGDWGACDPTNPKNRRTRSSLKISRVSERGSNTTVIVDT 60 ++ FT+LGCG+S GVPRI GDWG CDP NPKNRR R+SL + R G+NT V++DT Sbjct: 29 LR----FTLLGCGSSPGVPRINGDWGKCDPKNPKNRRRRASLLVERYDAEGNNTVVVIDT 84 Query: 61 GPDFYMQVLREQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDCMKHLFE 120 GPDF MQ++ V +DA +YTHPHADHIHGID LR Y + R +DVYA L++ Sbjct: 85 GPDFRMQMIDSGVHMLDAAVYTHPHADHIHGIDDLRTYVVDNGRLMDVYANRLTRNRLYD 144 Query: 121 SFRYCFKALDDRTYPPIVNPIVIENNDVPICMKSAGGVIEAIPILQQHGRISSLGFRFGN 180 +F YCF+ +YPPI++ I P ++ AGG I P Q HG I SLGFR G+ Sbjct: 145 TFGYCFETPVGSSYPPILSMHDIAPET-PFSIEGAGGAIRFEPFSQVHGDIESLGFRIGS 203 Query: 181 VAYCTDVNAFPAESLEKLQNLDFLIIDALKNGLHSSHFSLSESLKKIELINPKNAILTHM 240 V YCTDV+AFP +SL+ +++ D LII AL+ H SHFSL E+L+ IE ++PK AILTHM Sbjct: 204 VVYCTDVSAFPEQSLQYIKDADVLIIGALQYRPHPSHFSLGEALEWIEKLSPKRAILTHM 263 Query: 241 HVDLDYDMVLKSTPSRVVPAFDGMQFS 267 HV LDY+ V++ TP V P +DG++F Sbjct: 264 HVPLDYETVMRETPHHVEPGYDGLRFE 290 |
>3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas putida KT2440} PDB: 1xto_A Length = 321 | Back alignment and structure |
---|
>1xto_A Coenzyme PQQ synthesis protein B; alpha-beta protein, northeast structural genomics consortium, NESG, protein structure initiative; 2.80A {Pseudomonas putida KT2440} SCOP: d.157.1.6 Length = 311 | Back alignment and structure |
---|
>3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate utilization, alkylphosphonate uptake; 1.40A {Escherichia coli} Length = 258 | Back alignment and structure |
---|
>1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein structure initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9 Length = 268 | Back alignment and structure |
---|
>1y44_A Ribonuclease Z; zinc-dependent metal hydrolase; HET: MES; 2.10A {Bacillus subtilis} SCOP: d.157.1.7 PDB: 2fk6_A* Length = 320 | Back alignment and structure |
---|
>2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z, hydrolase, metal- binding, endonuclease, tRNA processing, zinc; 2.9A {Escherichia coli} SCOP: d.157.1.7 Length = 306 | Back alignment and structure |
---|
>2wyl_A L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59A {Escherichia coli} PDB: 2wym_A* Length = 360 | Back alignment and structure |
---|
>3h3e_A Uncharacterized protein TM1679; structural genomics, surface entropy reduction, ISFI, beta- lactamase superfamily, PSI-2; 2.75A {Thermotoga maritima} Length = 267 | Back alignment and structure |
---|
>2p4z_A Metal-dependent hydrolases of the beta-lactamase superfamily II; 2.10A {Thermoanaerobacter tengcongensis MB4} Length = 284 | Back alignment and structure |
---|
>2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline binding protein; PCE, hydrolase; HET: PC BTB; 1.92A {Streptococcus pneumoniae} SCOP: b.109.1.1 d.157.1.8 PDB: 1wra_A* Length = 547 | Back alignment and structure |
---|
>3bv6_A Metal-dependent hydrolase; metallo protein, beta-lactamase like fold, MCSG, structural genomics, PSI-2; 1.80A {Vibrio cholerae o1 biovar eltor str} Length = 379 | Back alignment and structure |
---|
>3kl7_A Putative metal-dependent hydrolase; structural genomics, joint center for structural genomics, JCSG; 2.30A {Parabacteroides distasonis atcc 8503} Length = 235 | Back alignment and structure |
---|
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A* Length = 398 | Back alignment and structure |
---|
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistance, structure, hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa} Length = 246 | Back alignment and structure |
---|
>2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.97A {Thermotoga maritima} SCOP: d.157.1.7 PDB: 1ww1_A Length = 280 | Back alignment and structure |
---|
>2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella enterica} Length = 210 | Back alignment and structure |
---|
>1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two monomers PER assymmetric UNIT., hydrolase; HET: GOL; 1.65A {Fluoribacter gormanii} SCOP: d.157.1.1 PDB: 1jt1_A* 1l9y_A Length = 263 | Back alignment and structure |
---|
>1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor, succinic acid inhibitor, hydrolase; HET: BDS; 1.80A {Pseudomonas aeruginosa} SCOP: d.157.1.1 PDB: 1dd6_A* 1vgn_A* 2doo_A* 1wup_A 1wuo_A 1jje_A* 1ddk_A Length = 228 | Back alignment and structure |
---|
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A Length = 459 | Back alignment and structure |
---|
>2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Enterococcus faecalis V583} SCOP: d.157.1.10 Length = 429 | Back alignment and structure |
---|
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1 Length = 223 | Back alignment and structure |
---|
>1p9e_A Methyl parathion hydrolase; Zn containing; 2.40A {Pseudomonas SP} SCOP: d.157.1.5 Length = 331 | Back alignment and structure |
---|
>3adr_A Putative uncharacterized protein ST1585; quorum sensing, quinolone signal, metallo-beta-lactamase FOL conserved hypothetical protein; HET: EPE; 1.80A {Sulfolobus tokodaii} Length = 261 | Back alignment and structure |
---|
>2p18_A Glyoxalase II; metalloprotein, beta sandwich, alpha-helical domain, hydrolase; HET: SPD; 1.80A {Leishmania infantum} PDB: 2p1e_A* Length = 311 | Back alignment and structure |
---|
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus HB27} PDB: 3bk1_A* Length = 562 | Back alignment and structure |
---|
>3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding, periplasm,; HET: SDF; 1.41A {Aeromonas hydrophila} PDB: 1x8i_A 3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A Length = 227 | Back alignment and structure |
---|
>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10 Length = 717 | Back alignment and structure |
---|
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A* Length = 651 | Back alignment and structure |
---|
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A* Length = 658 | Back alignment and structure |
---|
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3 Length = 402 | Back alignment and structure |
---|
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis} Length = 414 | Back alignment and structure |
---|
>2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein, SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A 2q0i_A 3dh8_A* Length = 303 | Back alignment and structure |
---|
>2whg_A VIM-4 metallo-beta-lactamase; hydrolase, alpha-beta/BETA-alpha fold; HET: FLC; 1.90A {Pseudomonas aeruginosa} PDB: 2wrs_A* 1ko3_A 1ko2_A Length = 230 | Back alignment and structure |
---|
>1qh5_A Glyoxalase II, protein (hydroxyacylglutathione hydrolase); metallo-hydrolase; HET: GTT GBP; 1.45A {Homo sapiens} SCOP: d.157.1.2 PDB: 1qh3_A* Length = 260 | Back alignment and structure |
---|
>1ko3_A VIM-2 metallo-beta-lactamase; alpha-beta/BETA-alpha fold, hydrolase; 1.91A {Pseudomonas aeruginosa} SCOP: d.157.1.1 PDB: 1ko2_A Length = 230 | Back alignment and structure |
---|
>1vme_A Flavoprotein; TM0755, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; HET: MSE; 1.80A {Thermotoga maritima} SCOP: c.23.5.1 d.157.1.3 Length = 410 | Back alignment and structure |
---|
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidoreductase; HET: FMN; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2ohi_A* 2ohj_A* Length = 404 | Back alignment and structure |
---|
>3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance, hydrolase; 1.65A {Chryseobacterium indologenes} Length = 219 | Back alignment and structure |
---|
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei} Length = 640 | Back alignment and structure |
---|
>1ztc_A Hypothetical protein TM0894; structural genomics, PSI, protein structure initiative, joint center for structural genomics, JCSG; HET: MSE; 2.10A {Thermotoga maritima} SCOP: d.157.1.11 Length = 221 | Back alignment and structure |
---|
Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 271 | metal-dependent hydrolase protein [Candidatus Liberibac | ||
3md7_A | 293 | Beta-lactamase-like; ssgcid, hydrolase, structural geno | 100.0 | |
3jxp_A | 321 | Coenzyme PQQ synthesis protein B; alpha-beta protein, P | 100.0 | |
3g1p_A | 258 | Protein PHNP; C-P lyase, phosphodiesterase, phosphonate | 100.0 | |
2cbn_A | 306 | Ribonuclease Z; phosphodiesterase beta lactamase tRNAse | 100.0 | |
1zkp_A | 268 | Hypothetical protein BA1088; zinc binding protein, stru | 100.0 | |
1y44_A | 320 | Ribonuclease Z; zinc-dependent metal hydrolase; HET: ME | 100.0 | |
3h3e_A | 267 | Uncharacterized protein TM1679; structural genomics, su | 99.96 | |
3bk2_A | 562 | RNAse J, metal dependent hydrolase; endoribonuclease, e | 99.79 | |
2e7y_A | 280 | TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, struc | 99.96 | |
2p4z_A | 284 | Metal-dependent hydrolases of the beta-lactamase superf | 99.81 | |
3kl7_A | 235 | Putative metal-dependent hydrolase; structural genomics | 99.74 | |
2az4_A | 429 | Hypothetical protein EF2904; structural genomics, PSI, | 99.84 | |
1vjn_A | 220 | Zn-dependent hydrolase of metallo-beta-lactamase superf | 99.51 | |
3adr_A | 261 | Putative uncharacterized protein ST1585; quorum sensing | 99.48 | |
2wyl_A | 360 | L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59 | 99.78 | |
3bv6_A | 379 | Metal-dependent hydrolase; metallo protein, beta-lactam | 99.77 | |
3hnn_A | 262 | Putative diflavin flavoprotein A 5; PSI-2, protein stru | 98.64 | |
2i7t_A | 459 | Cleavage and polyadenylation specificity factor 73 kDa | 99.77 | |
3af5_A | 651 | Putative uncharacterized protein PH1404; archaeal CPSF, | 99.68 | |
2xr1_A | 640 | Cleavage and polyadenylation specificity factor 1 subun | 99.67 | |
2i7x_A | 717 | Protein CFT2; polyadenylation, metallo-B-lactamase, PRE | 99.55 | |
2bib_A | 547 | CBPE, teichoic acid phosphorylcholine esterase/ choline | 99.47 | |
1ztc_A | 221 | Hypothetical protein TM0894; structural genomics, PSI, | 99.42 | |
3dha_A | 254 | N-acyl homoserine lactone hydrolase; zinc bimetallohydr | 98.75 | |
1sml_A | 269 | Protein (penicillinase); metallo-beta-lactamase, antibi | 99.15 | |
2gmn_A | 274 | Metallo-beta-lactamase; hydrolase; 1.40A {Bradyrhizobiu | 99.03 | |
1p9e_A | 331 | Methyl parathion hydrolase; Zn containing; 2.40A {Pseud | 98.93 | |
3esh_A | 280 | Protein similar to metal-dependent hydrolase; structura | 98.92 | |
1k07_A | 263 | FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alph | 98.91 | |
2zo4_A | 317 | Metallo-beta-lactamase family protein; hydrolase; 2.10A | 98.88 | |
1e5d_A | 402 | Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DII | 98.82 | |
2ohh_A | 404 | Type A flavoprotein FPRA; beta-lactamase like domain, f | 98.78 | |
1ycg_A | 398 | Nitric oxide reductase; DIIRON site, oxidoreductase; HE | 98.78 | |
2vw8_A | 303 | PA1000, PQSE; quinolone signal response protein, signal | 98.74 | |
2r2d_A | 276 | AGR_PTI_140P, Zn-dependent hydrolases; lactonase, N-acy | 98.7 | |
3l6n_A | 219 | Metallo-beta-lactamase; zinc, hydolase, antibiotics res | 98.62 | |
2zwr_A | 207 | Metallo-beta-lactamase superfamily protein; hydrolase; | 98.6 | |
1a7t_A | 232 | Metallo-beta-lactamase; hydrolase (beta-lactamase), zin | 98.57 | |
3iog_A | 227 | Beta-lactamase; hydrolase, antibiotic resistance, metal | 98.57 | |
2p18_A | 311 | Glyoxalase II; metalloprotein, beta sandwich, alpha-hel | 98.54 | |
2yz3_A | 266 | Metallo-beta-lactamase; enzyme-inhibitor complex, hydro | 98.53 | |
1qh5_A | 260 | Glyoxalase II, protein (hydroxyacylglutathione hydrolas | 98.5 | |
2whg_A | 230 | VIM-4 metallo-beta-lactamase; hydrolase, alpha-beta/BET | 98.5 | |
1m2x_A | 223 | Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fol | 98.44 | |
1jjt_A | 228 | IMP-1 metallo beta-lactamase; metallo-beta-lactamase in | 98.39 | |
2cfu_A | 658 | SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1 | 98.33 | |
2fhx_A | 246 | SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiot | 98.19 | |
1mqo_A | 227 | Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolas | 98.06 | |
2xf4_A | 210 | Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salm | 98.92 | |
2q9u_A | 414 | A-type flavoprotein; flavodoxin like, beta lactamase li | 98.86 | |
1vme_A | 410 | Flavoprotein; TM0755, structural genomics, JCSG, protei | 98.84 | |
2qed_A | 258 | Hydroxyacylglutathione hydrolase; metallo-B- lactamase | 98.55 | |
1xm8_A | 254 | Glyoxalase II; structural genomics, protein structure i | 98.54 | |
2gcu_A | 245 | Putative hydroxyacylglutathione hydrolase 3; ethylmalon | 98.48 | |
2p97_A | 201 | Hypothetical protein; putative metal-dependent hydrolas | 97.53 |
>3md7_A Beta-lactamase-like; ssgcid, hydrolase, structural genomics, seattle structural genomics center for infectious disease; HET: 5GP TLA; 1.27A {Brucella melitensis biovar abortus} | Back alignment and structure |
---|
Probab=100.00 E-value=0 Score=386.55 Aligned_cols=268 Identities=51% Similarity=0.935 Sum_probs=215.4 Q ss_pred CCEEEEEEEEECCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCHHHHHHHCCCCCCCEEEE Q ss_conf 87259999854178965133788787777876774443069999336778971899987984156675223342059999 Q gi|254780214|r 2 KDYYHFTILGCGASLGVPRITGDWGACDPTNPKNRRTRSSLKISRVSERGSNTTVIVDTGPDFYMQVLREQVLSIDAVLY 81 (271) Q Consensus 2 ~~~m~l~~LGtg~s~g~P~~~c~c~~C~~~~~~~~R~~~s~~i~~~~~~~~~~~iLiD~G~d~r~ql~~~~i~~Id~I~i 81 (271) .+.|||||||||+|+|+|+++|+|++|++++++|+|+|+|++|+.....+++.+||||||+|+|.|+++.++++||+||| T Consensus 26 ~~~Mkit~LGTG~~~g~P~~~c~c~~C~~a~~~~~R~~~S~li~~~~~~~~~~~iLiD~G~~~~~~~~~~~~~~id~I~l 105 (293) T 3md7_A 26 RNCLRFTLLGCGSSPGVPRINGDWGKCDPKNPKNRRRRASLLVERYDAEGNNTVVVIDTGPDFRMQMIDSGVHMLDAAVY 105 (293) T ss_dssp CSEEEEEEEECBCTTCBSCTTCCCTTSCTTCGGGCBCBCEEEEEEECTTCCEEEEEECCCTTHHHHHHHHTCCCCSEEEC T ss_pred CCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCHHHHHHHCCCCCCCEEEE T ss_conf 78039999987689870569999874765578886633479998546789975899968813799986423456778998 Q ss_pred ECCCHHHHHHCCHHHHHHHCCCCEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEE Q ss_conf 74352422011102433317821110131120232100222210136677531001232112344333420115874899 Q gi|254780214|r 82 THPHADHIHGIDGLRGYFLKQKRPIDVYAAPDCMKHLFESFRYCFKALDDRTYPPIVNPIVIENNDVPICMKSAGGVIEA 161 (271) Q Consensus 82 TH~H~DHi~Gl~~Lr~~~~~~~~~i~vy~~~~~~~~l~~~~~y~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i 161 (271) ||+|+||+.||+.|+...+....+++++++..........+.+................. ................+.+ T Consensus 106 TH~H~DH~~GL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 184 (293) T 3md7_A 106 THPHADHIHGIDDLRTYVVDNGRLMDVYANRLTRNRLYDTFGYCFETPVGSSYPPILSMH-DIAPETPFSIEGAGGAIRF 184 (293) T ss_dssp SCCCHHHHTTGGGGHHHHHHHTSCEEEEECHHHHHHHHHHCGGGTSCCTTCCCCCCEEEE-ECCTTCCEEECCTTCCEEE T ss_pred ECCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCHHHHHCCCCHHCCCCCCCCCCCCHHCC-CCCCCCCCEEECCCCEEEE T ss_conf 446644455754544455404555313410011012202430011455433346410000-0246653101024651788 Q ss_pred EEEEEECCCEECCCCCCCCEEEECCCCCCHHHHHHHHCCHHEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCC Q ss_conf 99995077621123346862530323300167888622211025302335768875799999999997299779997688 Q gi|254780214|r 162 IPILQQHGRISSLGFRFGNVAYCTDVNAFPAESLEKLQNLDFLIIDALKNGLHSSHFSLSESLKKIELINPKNAILTHMH 241 (271) Q Consensus 162 ~~~~~~Hg~~~~~Gyri~~~~Y~~Dt~~~~e~~~~~l~~~D~lI~d~l~~~~~~~H~~~~ea~~~~~~~~~k~~~LtHls 241 (271) .++.+.++...+..+.....+|..+.....+.....+.+++++..+.+....+++|+|++||++++++++|||++||||| T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~t~~ea~~l~~~~~~k~liLtHis 264 (293) T 3md7_A 185 EPFSQVHGDIESLGFRIGSVVYCTDVSAFPEQSLQYIKDADVLIIGALQYRPHPSHFSLGEALEWIEKLSPKRAILTHMH 264 (293) T ss_dssp EEEEEEETTEEEEEEEETTEEEECSCSBCCGGGHHHHTTCSEEEEECCCSSCBTTBCCHHHHHHHHHHHCCSEEEEESBC T ss_pred EEEEECCCCCEEEEEECCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCC T ss_conf 76876247730444410211204753111102455543210011002367998998999999999997598989998999 Q ss_pred CCCCHHHHHHHCCCCCEEEEECCEEEEEC Q ss_conf 89888899986799819902044899626 Q gi|254780214|r 242 VDLDYDMVLKSTPSRVVPAFDGMQFSSPI 270 (271) Q Consensus 242 ~~~~~~~~~~~~~~~v~~A~DGm~i~l~~ 270 (271) |+++++++.++++++|++|||||+|+|++ T Consensus 265 ~~~~~~~~~~~l~~~v~~A~DGM~i~l~~ 293 (293) T 3md7_A 265 VPLDYETVMRETPHHVEPGYDGLRFEVAV 293 (293) T ss_dssp TTCCHHHHHHHSCTTEEECCTTCEEEECC T ss_pred CCCCHHHHHHHCCCCEEEEECCEEEEEEC T ss_conf 98799999965789819957895999879 |
>3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas putida KT2440} PDB: 1xto_A | Back alignment and structure |
---|
>3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate utilization, alkylphosphonate uptake; 1.40A {Escherichia coli} | Back alignment and structure |
---|
>2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z, hydrolase, metal- binding, endonuclease, tRNA processing, zinc; 2.9A {Escherichia coli} SCOP: d.157.1.7 | Back alignment and structure |
---|
>1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein structure initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9 | Back alignment and structure |
---|
>1y44_A Ribonuclease Z; zinc-dependent metal hydrolase; HET: MES; 2.10A {Bacillus subtilis} SCOP: d.157.1.7 PDB: 2fk6_A* | Back alignment and structure |
---|
>3h3e_A Uncharacterized protein TM1679; structural genomics, surface entropy reduction, ISFI, beta- lactamase superfamily, PSI-2; 2.75A {Thermotoga maritima} | Back alignment and structure |
---|
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus HB27} PDB: 3bk1_A* | Back alignment and structure |
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>2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.97A {Thermotoga maritima} SCOP: d.157.1.7 PDB: 1ww1_A | Back alignment and structure |
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>2p4z_A Metal-dependent hydrolases of the beta-lactamase superfamily II; 2.10A {Thermoanaerobacter tengcongensis MB4} | Back alignment and structure |
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>3kl7_A Putative metal-dependent hydrolase; structural genomics, joint center for structural genomics, JCSG; 2.30A {Parabacteroides distasonis atcc 8503} | Back alignment and structure |
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>2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Enterococcus faecalis V583} SCOP: d.157.1.10 | Back alignment and structure |
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>1vjn_A Zn-dependent hydrolase of metallo-beta-lactamase superfamily TM0207; structural genomics, JCSG, PSI, protein structure initiative; 2.00A {Thermotoga maritima} SCOP: d.157.1.4 | Back alignment and structure |
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>3adr_A Putative uncharacterized protein ST1585; quorum sensing, quinolone signal, metallo-beta-lactamase FOL conserved hypothetical protein; HET: EPE; 1.80A {Sulfolobus tokodaii} | Back alignment and structure |
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>2wyl_A L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59A {Escherichia coli} PDB: 2wym_A* | Back alignment and structure |
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>3bv6_A Metal-dependent hydrolase; metallo protein, beta-lactamase like fold, MCSG, structural genomics, PSI-2; 1.80A {Vibrio cholerae o1 biovar eltor str} | Back alignment and structure |
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>3hnn_A Putative diflavin flavoprotein A 5; PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, NSR435A, DFA5; 1.80A {Nostoc SP} | Back alignment and structure |
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>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A | Back alignment and structure |
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>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A* | Back alignment and structure |
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>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei} | Back alignment and structure |
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>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10 | Back alignment and structure |
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>2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline binding protein; PCE, hydrolase; HET: PC BTB; 1.92A {Streptococcus pneumoniae} SCOP: b.109.1.1 d.157.1.8 PDB: 1wra_A* | Back alignment and structure |
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>1ztc_A Hypothetical protein TM0894; structural genomics, PSI, protein structure initiative, joint center for structural genomics, JCSG; HET: MSE; 2.10A {Thermotoga maritima} SCOP: d.157.1.11 | Back alignment and structure |
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>3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase, quorum quenching, alternative binding site, product complex; HET: C6L GOL; 0.95A {Bacillus thuringiensis serovarkurstaki} PDB: 3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A | Back alignment and structure |
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>1sml_A Protein (penicillinase); metallo-beta-lactamase, antibiotic resistance, binuclear zinc, hydrolase; 1.70A {Stenotrophomonas maltophilia} SCOP: d.157.1.1 PDB: 2aio_A* 2fm6_A 2fu6_A 2fu7_A* 2fu8_A* 2fu9_A* 2gfj_A* 2gfk_A* 2h6a_A 2hb9_A* 2qdt_A* 2qjs_A 2qin_A | Back alignment and structure |
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>2gmn_A Metallo-beta-lactamase; hydrolase; 1.40A {Bradyrhizobium japonicum usda 110} SCOP: d.157.1.1 | Back alignment and structure |
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>1p9e_A Methyl parathion hydrolase; Zn containing; 2.40A {Pseudomonas SP} SCOP: d.157.1.5 | Back alignment and structure |
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>3esh_A Protein similar to metal-dependent hydrolase; structural genomics, PSI-2, protein structure initiative; 2.50A {Staphylococcus aureus subsp} | Back alignment and structure |
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>1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two monomers PER assymmetric UNIT., hydrolase; HET: GOL; 1.65A {Fluoribacter gormanii} SCOP: d.157.1.1 PDB: 1jt1_A* 1l9y_A | Back alignment and structure |
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>2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus thermophilus HB8} | Back alignment and structure |
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>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3 | Back alignment and structure |
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>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidoreductase; HET: FMN; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2ohi_A* 2ohj_A* | Back alignment and structure |
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>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A* | Back alignment and structure |
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>2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein, SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A 2q0i_A 3dh8_A* | Back alignment and structure |
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>2r2d_A AGR_PTI_140P, Zn-dependent hydrolases; lactonase, N-acyl hompserine lactone, DI-nuclear zinc center, quorum quenching, AIIB, phosphate; HET: PO4; 1.75A {Agrobacterium tumefaciens} | Back alignment and structure |
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>3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance, hydrolase; 1.65A {Chryseobacterium indologenes} | Back alignment and structure |
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>2zwr_A Metallo-beta-lactamase superfamily protein; hydrolase; 2.20A {Thermus thermophilus} PDB: 2zzi_A | Back alignment and structure |
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>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A* | Back alignment and structure |
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>3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding, periplasm,; HET: SDF; 1.41A {Aeromonas hydrophila} PDB: 1x8i_A 3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A | Back alignment and structure |
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>2p18_A Glyoxalase II; metalloprotein, beta sandwich, alpha-helical domain, hydrolase; HET: SPD; 1.80A {Leishmania infantum} PDB: 2p1e_A* | Back alignment and structure |
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>2yz3_A Metallo-beta-lactamase; enzyme-inhibitor complex, hydrolase; HET: M5P; 2.30A {Pseudomonas putida} SCOP: d.157.1.1 | Back alignment and structure |
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>1qh5_A Glyoxalase II, protein (hydroxyacylglutathione hydrolase); metallo-hydrolase; HET: GTT GBP; 1.45A {Homo sapiens} SCOP: d.157.1.2 PDB: 1qh3_A* | Back alignment and structure |
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>2whg_A VIM-4 metallo-beta-lactamase; hydrolase, alpha-beta/BETA-alpha fold; HET: FLC; 1.90A {Pseudomonas aeruginosa} PDB: 2wrs_A* 1ko3_A 1ko2_A | Back alignment and structure |
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>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1 | Back alignment and structure |
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>1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor, succinic acid inhibitor, hydrolase; HET: BDS; 1.80A {Pseudomonas aeruginosa} SCOP: d.157.1.1 PDB: 1dd6_A* 1vgn_A* 2doo_A* 1wup_A 1wuo_A 1jje_A* 1ddk_A | Back alignment and structure |
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>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A* | Back alignment and structure |
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>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistance, structure, hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa} | Back alignment and structure |
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>1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT; 1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A 1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A 3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A 2bfz_A 2bg6_A 2bga_A ... | Back alignment and structure |
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>2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella enterica} | Back alignment and structure |
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>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis} | Back alignment and structure |
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>1vme_A Flavoprotein; TM0755, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; HET: MSE; 1.80A {Thermotoga maritima} SCOP: c.23.5.1 d.157.1.3 | Back alignment and structure |
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>2qed_A Hydroxyacylglutathione hydrolase; metallo-B- lactamase superfamily; 1.45A {Salmonella typhimurium LT2} SCOP: d.157.1.2 | Back alignment and structure |
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>1xm8_A Glyoxalase II; structural genomics, protein structure initiative, CESG, AT2G31350, metallo-hydrolase, zinc/iron binuclear center; 1.74A {Arabidopsis thaliana} SCOP: d.157.1.2 PDB: 2q42_A | Back alignment and structure |
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>2gcu_A Putative hydroxyacylglutathione hydrolase 3; ethylmalonic encephalopathy, ETHE1, structural genomics, protein structure initiative; 1.48A {Arabidopsis thaliana} | Back alignment and structure |
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>2p97_A Hypothetical protein; putative metal-dependent hydrolase, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.157.1.12 | Back alignment and structure |
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Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | E-value |
271 | metal-dependent hydrolase protein [Candidatus Liberibac | |||
d1xtoa_ | 304 | d.157.1.6 (A:) Coenzyme PQQ synthesis protein B, PqqB { | 2e-28 | |
d1zkpa1 | 244 | d.157.1.9 (A:1-244) Hypothetical protein BA1088 (BAS101 | 1e-14 | |
d1y44a1 | 307 | d.157.1.7 (A:1-307) Ribonuclease Z (RNase Z) {Bacillus | 1e-12 | |
d2cbna1 | 305 | d.157.1.7 (A:1-305) Ribonuclease Z (RNase Z) {Escherich | 4e-09 | |
d2e7ya1 | 280 | d.157.1.7 (A:1-280) Ribonuclease Z (RNase Z) {Thermotog | 8e-08 | |
d1vmea2 | 250 | d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755, N-ter | 3e-05 | |
d1wraa1 | 305 | d.157.1.8 (A:30-334) Teichoic acid phosphorylcholine es | 4e-04 | |
d2az4a1 | 183 | d.157.1.10 (A:56-238) Hypothetical protein EF2904 {Ente | 6e-07 | |
d1ztca1 | 207 | d.157.1.11 (A:1-207) Hypothetical protein TM0894 {Therm | 3e-06 | |
d2cfua2 | 505 | d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas | 7e-06 | |
d2i7xa1 | 514 | d.157.1.10 (A:1-422,A:626-717) Cleavage factor two prot | 1e-04 | |
d2i7ta1 | 451 | d.157.1.10 (A:9-459) Cleavage and polyadenylation speci | 2e-04 | |
d1qh5a_ | 260 | d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hy | 3e-04 | |
d1p9ea_ | 294 | d.157.1.5 (A:) Methyl parathion hydrolase {Pseudomonas | 4e-04 | |
d2q0ia1 | 298 | d.157.1.14 (A:1-298) Quinolone signal response protein | 0.003 | |
d2dkfa1 | 431 | d.157.1.10 (A:1-431) Putative RNA-degradation protein T | 1e-05 |
>d1xtoa_ d.157.1.6 (A:) Coenzyme PQQ synthesis protein B, PqqB {Pseudomonas putida [TaxId: 303]} Length = 304 | Back information, alignment and structure |
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class: Alpha and beta proteins (a+b) fold: Metallo-hydrolase/oxidoreductase superfamily: Metallo-hydrolase/oxidoreductase family: Coenzyme PQQ synthesis protein B, PqqB domain: Coenzyme PQQ synthesis protein B, PqqB species: Pseudomonas putida [TaxId: 303] Score = 119 bits (299), Expect = 2e-28 Identities = 47/313 (15%), Positives = 84/313 (26%), Gaps = 67/313 (21%) Query: 8 TILGCGASLGVPRITGDWGAC----DPTNPKNRRTRSSLKISRVSERGSNTTVIVDTGPD 63 +LG A G P+ + C D T RT+SS+ + ++ + PD Sbjct: 4 QVLGSAAGGGFPQWNCNCVNCKGYRDGTLKATARTQSSIAL----SDDGVHWILCNASPD 59 Query: 64 FYMQVL---------REQVLSIDAVLYTHPHADHIHGIDGLRGYFLKQKRPIDVYAAPDC 114 Q+ + I+A++ DH G+ LR + P V+ Sbjct: 60 IRAQLQAFAPMQPARALRDTGINAIVLLDSQIDHTTGLLSLR-----EGCPHQVWCTDMV 114 Query: 115 MKHLFESFRYCFKALDDRTYPPIVNPIVIENNDVPICMKSAGGVIEAIPILQQHGRISSL 174 + L F L N I +E + V A ++ P + Sbjct: 115 HQDLTTGFPLFNM-LSHWNGGLQWNRIELEGSFVI----DACPNLKFTPFPLRSAAPPYS 169 Query: 175 GFRFGNVAYCTDVNAFPAES-----------------------------LEKLQNLDFLI 205 RF ++ D + Sbjct: 170 PHRFDPHPGDNLGLMVEDTRTGGKLFYAPGLGQVDEKLLAMMHGADCLLVDGTLWEDDEM 229 Query: 206 IDA------LKNGLHSSHFSLSESLKKIELINPKNAILTHM-----HVDLDYDMVLKSTP 254 + H + L+ ++ + +L H+ +D + + Sbjct: 230 QRRGVGTRTGREMGHLAQNGPGGMLEVLDGFPRQRKVLIHINNTNPILDENSPERAEVLR 289 Query: 255 SRVVPAFDGMQFS 267 V AFDGM Sbjct: 290 RGVEVAFDGMSIE 302 |
>d1zkpa1 d.157.1.9 (A:1-244) Hypothetical protein BA1088 (BAS1016) {Bacillus anthracis [TaxId: 1392]} Length = 244 | Back information, alignment and structure |
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>d1y44a1 d.157.1.7 (A:1-307) Ribonuclease Z (RNase Z) {Bacillus subtilis [TaxId: 1423]} Length = 307 | Back information, alignment and structure |
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>d2cbna1 d.157.1.7 (A:1-305) Ribonuclease Z (RNase Z) {Escherichia coli [TaxId: 562]} Length = 305 | Back information, alignment and structure |
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>d2e7ya1 d.157.1.7 (A:1-280) Ribonuclease Z (RNase Z) {Thermotoga maritima [TaxId: 2336]} Length = 280 | Back information, alignment and structure |
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>d1vmea2 d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 250 | Back information, alignment and structure |
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>d1wraa1 d.157.1.8 (A:30-334) Teichoic acid phosphorylcholine esterase Pce (LytD), N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 305 | Back information, alignment and structure |
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>d2az4a1 d.157.1.10 (A:56-238) Hypothetical protein EF2904 {Enterococcus faecalis [TaxId: 1351]} Length = 183 | Back information, alignment and structure |
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>d1ztca1 d.157.1.11 (A:1-207) Hypothetical protein TM0894 {Thermotoga maritima [TaxId: 2336]} Length = 207 | Back information, alignment and structure |
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>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]} Length = 505 | Back information, alignment and structure |
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>d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein 2, CFT2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 514 | Back information, alignment and structure |
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>d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation specificity factor subunit 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 451 | Back information, alignment and structure |
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>d1qh5a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Human (Homo sapiens) [TaxId: 9606]} Length = 260 | Back information, alignment and structure |
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>d1p9ea_ d.157.1.5 (A:) Methyl parathion hydrolase {Pseudomonas sp. WBC-3 [TaxId: 165468]} Length = 294 | Back information, alignment and structure |
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>d2q0ia1 d.157.1.14 (A:1-298) Quinolone signal response protein PqsE {Pseudomonas aeruginosa [TaxId: 287]} Length = 298 | Back information, alignment and structure |
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>d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein TTHA0252 {Thermus thermophilus [TaxId: 274]} Length = 431 | Back information, alignment and structure |
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Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
Identity | Alignment graph |