254780222
DNA topoisomerase IV subunit B
| GeneID in NCBI database: | 8209203 | Locus tag: | CLIBASIA_00535 |
| Protein GI in NCBI database: | 254780222 | Protein Accession: | YP_003064635.1 |
| Gene range: | +(108048, 110108) | Protein Length: | 686aa |
| Gene description: | DNA topoisomerase IV subunit B | ||
| COG prediction: | [L] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit | ||
| KEGG prediction: | DNA topoisomerase IV subunit B; K02622 topoisomerase IV subunit B [EC:5.99.1.-] | ||
| SEED prediction: | Topoisomerase IV subunit B (EC 5.99.1.-) | ||
| Pathway involved in KEGG: | not defined | ||
| Subsystem involved in SEED: | DNA topoisomerases, Type II, ATP-dependent;
Resistance to fluoroquinolones | ||
| sequence | sequence profile | ||
Prediction of Local Sequence Properties
| Source | Summary | Result |
|---|
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
| Identity | Alignment graph | Length | Definition | E-value | |
| Target | 686 | DNA topoisomerase IV subunit B [Candidatus Liberibacter | |||
| 254780814 | 803 | DNA gyrase subunit B [Candidatus Liberibacter asia | 1e-115 | ||
| 254780814 | 803 | DNA gyrase subunit B [Candidatus Liberibacter asia | 3e-09 |
| >gi|254780814|ref|YP_003065227.1| DNA gyrase subunit B [Candidatus Liberibacter asiaticus str. psy62] Length = 803 | Back alignment |
|---|
Score = 407 bits (1045), Expect = e-115, Method: Compositional matrix adjust.
Identities = 257/655 (39%), Positives = 374/655 (57%), Gaps = 33/655 (5%)
Query: 43 NYDASSIRILEGLEPVRMRPGMYIGGTD-EKALHHLFSEVIDNAMDEVIAGYANLIEVSL 101
+YDA SI+IL+GL+ V+ RP MYIG TD E LHH+ EV+DNA+DE + GYA++I V+L
Sbjct: 9 SYDADSIQILKGLDAVKKRPSMYIGDTDGESGLHHMIYEVLDNAIDESLEGYADIITVTL 68
Query: 102 DGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISV 161
+ +G TV DNGRGIP + H K S E+I+T LHAGGKF+ +Y++SGGLHGVG+SV
Sbjct: 69 NMDGSCTVSDNGRGIPTDLH-KEEGISAAEVIMTRLHAGGKFNQKSYKVSGGLHGVGVSV 127
Query: 162 VNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAG 221
VNALS L + + R+ I+ F GI +PL N GT +TF P IF +
Sbjct: 128 VNALSSWLKLRIKREGNIYEMSFINGILDNPLVVTGSAGNDTGTEVTFLPSSDIFSVQ-D 186
Query: 222 FDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQ-TKLENR 280
F+ L + ++L+ V+ DK E P + ++ GG++ ++ +
Sbjct: 187 FNYDTLQHRLRELSFLNSSVQISL-IDKRSPE----PREITMFYKGGIEAFVSYLDRHKK 241
Query: 281 SLISSEIFTGKTEKKGTHRG-TVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVAL 338
L+ S I +G+ +++ A+ W + E + + N I +GGTH SGLR AL
Sbjct: 242 PLMQSPI-----RIQGSRDNISIDLAMRWNDGYHENVLCFTNNIPQKDGGTHLSGLRSAL 296
Query: 339 TRGIKKYAE--LTQNKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
TR I Y E K S+I DD +LS+ + +P F+ QTK KLVS + + V
Sbjct: 297 TRQITSYVEKSFGSKKDKRSVIGDDCREGFTSVLSIKMPDPRFSSQTKEKLVSSEVRSVV 356
Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREVNRKTAIRKL-RLPGKLAD 455
E+ + D +L ++P+EA +++ V++ S R R+ R++ R+ + + LPGKLAD
Sbjct: 357 ESFVNDGLSAWLEEHPLEAKIIVKKVLDASMVRDAARRARDLTRRKGVLDIASLPGKLAD 416
Query: 456 CSQNIAHGTELFIVEGDSAGGSAKQARNRSNQAVLPLRGKILNVASAGSEKIRNNQQIMD 515
CS+ +ELF+VEGDSAGGSAKQ R+R NQA+LPLRGKILNV A +K+ ++Q+I
Sbjct: 417 CSERDPKKSELFLVEGDSAGGSAKQGRSRENQAILPLRGKILNVERARFDKMLSSQEIGT 476
Query: 516 LVQALGCRT-RSQYREEDLRYEKVIIMTDADVDGAHIASLLLTFFYQEMYDLIEQKHLFL 574
L+ ALG + + LRY K+IIMTDADVDGAHI +LLLTFF+++M LI L++
Sbjct: 477 LITALGTGIGQDSFDINKLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPSLIHNGFLYI 536
Query: 575 ISPPLFRITQGTKSVYAHDEEH------KQKILEEFKKHGKGKIEISR-----FKGLGEM 623
I PPL+ IT+G Y DEE Q + EE + K IS+ F
Sbjct: 537 IKPPLYGITRGKSLQYVKDEESLEDYLINQSLSEEIELFCDSKGVISKNDLRNFIDDALK 596
Query: 624 LASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKLMGTKADERFKFIQERA 678
+ +K+ + +K + + I+ N D + IN + +K R FI E++
Sbjct: 597 IDKLIKDFYPNHDKTFIEQAVISGVFNCESDQE--INVSLASKLANRLNFIAEKS 649
|
| >gi|254780814|ref|YP_003065227.1| DNA gyrase subunit B [Candidatus Liberibacter asiaticus str. psy62] Length = 803 | Back alignment |
|---|
Score = 55.1 bits (131), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 600 ILEEFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSI 659
+L+ G+ I + R+KGLGEM ASQL ET ++ + R+LLRV+I D
Sbjct: 722 LLDTIFSIGRKGISMQRYKGLGEMNASQLWETTLNPDTRSLLRVKI----TDASQADDLF 777
Query: 660 NKLMGTKADERFKFIQERA 678
++LMG + + R +FIQE +
Sbjct: 778 SRLMGDEVEPRREFIQENS 796
|
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
| Identity | Alignment graph | Length | Definition | Round | E-value |
| Target | 686 | DNA topoisomerase IV subunit B [Candidatus Liberibacter | |||
| 315122338 | 681 | DNA topoisomerase IV subunit B [Candidatus Liberibacter | 1 | 0.0 | |
| 163760282 | 697 | DNA topoisomerase IV subunit B [Hoeflea phototrophica D | 1 | 0.0 | |
| 222086041 | 689 | DNA topoisomerase IV, B subunit [Agrobacterium radiobac | 1 | 0.0 | |
| 227821835 | 685 | DNA topoisomerase IV subunit B [Sinorhizobium fredii NG | 1 | 0.0 | |
| 239833957 | 732 | DNA topoisomerase IV, B subunit [Ochrobactrum intermedi | 1 | 0.0 | |
| 159184842 | 710 | DNA topoisomerase IV subunit B [Agrobacterium tumefacie | 1 | 0.0 | |
| 86357804 | 660 | DNA topoisomerase IV subunit B [Rhizobium etli CFN 42] | 1 | 0.0 | |
| 116252261 | 700 | DNA topoisomerase IV subunit B [Rhizobium leguminosarum | 1 | 0.0 | |
| 209549430 | 704 | DNA topoisomerase IV subunit B [Rhizobium leguminosarum | 1 | 0.0 | |
| 325293012 | 706 | DNA gyrase subunit B [Agrobacterium sp. H13-3] Length = | 1 | 0.0 |
| >gi|315122338|ref|YP_004062827.1| DNA topoisomerase IV subunit B [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 681 | Back alignment and organism information |
|---|
Score = 1176 bits (3043), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 572/680 (84%), Positives = 632/680 (92%)
Query: 3 DDSIDLFSTLPPQSQGSSEKLKKSGEIPDSPAFANQSASDNYDASSIRILEGLEPVRMRP 62
DDSIDLFSTLPPQ++ SS+K + S ++ + N + SDNYDASSIRILEGLEPVRMRP
Sbjct: 2 DDSIDLFSTLPPQNKESSKKFEDSDKLDSTNIHKNHTVSDNYDASSIRILEGLEPVRMRP 61
Query: 63 GMYIGGTDEKALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVENHP 122
GMYIGGTDEKALHHLFSEVIDNAMDEVIAG+A+LIEVSLD NGFLTVVDNGRGIPV+NHP
Sbjct: 62 GMYIGGTDEKALHHLFSEVIDNAMDEVIAGHADLIEVSLDNNGFLTVVDNGRGIPVDNHP 121
Query: 123 KFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQ 182
KFP+KSTLEII+T LHAGGKFD+STYEISGGLHGVGISVVNALSDEL VTV RQNT+FSQ
Sbjct: 122 KFPDKSTLEIIMTKLHAGGKFDSSTYEISGGLHGVGISVVNALSDELEVTVMRQNTVFSQ 181
Query: 183 KFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVK 242
+FSRGIPL PLEK KVRNKRGT I FRPDPKIFG+ A F+A+RL+K+T+SKAYLSGRVK
Sbjct: 182 RFSRGIPLGPLEKIGKVRNKRGTSIKFRPDPKIFGENASFNASRLVKITKSKAYLSGRVK 241
Query: 243 TCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEIFTGKTEKKGTHRGTV 302
T WSCDK+IAEKY IPEK EFYFPGGLKTYLQT+L+NRSLISSEIFTGKTE+KG++ G++
Sbjct: 242 TYWSCDKQIAEKYNIPEKTEFYFPGGLKTYLQTRLKNRSLISSEIFTGKTERKGSNPGSI 301
Query: 303 EWAIAWCEENPEITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQNKRAISIISDDL 362
EWAIAWCEE+PEITSYCNTILTDEGG+HESGLRVALTRGI+KYAELTQNKRA I SDD+
Sbjct: 302 EWAIAWCEEDPEITSYCNTILTDEGGSHESGLRVALTRGIRKYAELTQNKRAALITSDDI 361
Query: 363 MISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWV 422
MISAVGILSVFI EPEFAGQTKTKLVS DAQR VENALRDPFDHYLV+NP+E TKLLEWV
Sbjct: 362 MISAVGILSVFIPEPEFAGQTKTKLVSFDAQRIVENALRDPFDHYLVKNPVETTKLLEWV 421
Query: 423 IERSEERLRRRKQREVNRKTAIRKLRLPGKLADCSQNIAHGTELFIVEGDSAGGSAKQAR 482
IERSEERLRRRKQ+EVNRKTA+RKLRLPGKLADCSQN+A GTELFIVEGDSAGGSAKQAR
Sbjct: 422 IERSEERLRRRKQKEVNRKTAMRKLRLPGKLADCSQNMAKGTELFIVEGDSAGGSAKQAR 481
Query: 483 NRSNQAVLPLRGKILNVASAGSEKIRNNQQIMDLVQALGCRTRSQYREEDLRYEKVIIMT 542
NR+NQA+LPLRGKILNVASAG EKIR +QQI DL+QALGCRTRSQYREEDLRYEKVIIMT
Sbjct: 482 NRNNQAILPLRGKILNVASAGLEKIRTSQQISDLIQALGCRTRSQYREEDLRYEKVIIMT 541
Query: 543 DADVDGAHIASLLLTFFYQEMYDLIEQKHLFLISPPLFRITQGTKSVYAHDEEHKQKILE 602
DADVDGAHIASLLLTFFYQEMY LIEQKHLFL+SPPLFRITQG++S+YA DEEHKQ+IL+
Sbjct: 542 DADVDGAHIASLLLTFFYQEMYGLIEQKHLFLVSPPLFRITQGSRSIYARDEEHKQEILK 601
Query: 603 EFKKHGKGKIEISRFKGLGEMLASQLKETAMDANKRTLLRVEINKDLNSLKDTQDSINKL 662
+F++ G+GKIEI+RFKGLGEMLASQLKETAMDA KRTLLRVE+ D S + T+DSI+KL
Sbjct: 602 DFREKGRGKIEINRFKGLGEMLASQLKETAMDATKRTLLRVELCSDQESFEKTKDSIHKL 661
Query: 663 MGTKADERFKFIQERASFID 682
MGTKADERFKFIQERA+F+D
Sbjct: 662 MGTKADERFKFIQERATFVD 681
|
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|163760282|ref|ZP_02167365.1| DNA topoisomerase IV subunit B [Hoeflea phototrophica DFL-43] Length = 697 | Back alignment and organism information |
|---|
| >gi|222086041|ref|YP_002544573.1| DNA topoisomerase IV, B subunit [Agrobacterium radiobacter K84] Length = 689 | Back alignment and organism information |
|---|
| >gi|227821835|ref|YP_002825805.1| DNA topoisomerase IV subunit B [Sinorhizobium fredii NGR234] Length = 685 | Back alignment and organism information |
|---|
| >gi|239833957|ref|ZP_04682285.1| DNA topoisomerase IV, B subunit [Ochrobactrum intermedium LMG 3301] Length = 732 | Back alignment and organism information |
|---|
| >gi|159184842|ref|NP_354616.2| DNA topoisomerase IV subunit B [Agrobacterium tumefaciens str. C58] Length = 710 | Back alignment and organism information |
|---|
| >gi|86357804|ref|YP_469696.1| DNA topoisomerase IV subunit B [Rhizobium etli CFN 42] Length = 660 | Back alignment and organism information |
|---|
| >gi|116252261|ref|YP_768099.1| DNA topoisomerase IV subunit B [Rhizobium leguminosarum bv. viciae 3841] Length = 700 | Back alignment and organism information |
|---|
| >gi|209549430|ref|YP_002281347.1| DNA topoisomerase IV subunit B [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 704 | Back alignment and organism information |
|---|
| >gi|325293012|ref|YP_004278876.1| DNA gyrase subunit B [Agrobacterium sp. H13-3] Length = 706 | Back alignment and organism information |
|---|
Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
| Identity | Alignment graph | Length | Definition | E-value |
| Target | 686 | DNA topoisomerase IV subunit B [Candidatus Liberibacter | ||
| PRK05559 | 631 | PRK05559, PRK05559, DNA topoisomerase IV subunit B; Rev | 0.0 | |
| PRK05644 | 638 | PRK05644, gyrB, DNA gyrase subunit B; Validated | 0.0 | |
| TIGR01059 | 654 | TIGR01059, gyrB, DNA gyrase, B subunit | 0.0 | |
| TIGR01055 | 625 | TIGR01055, parE_Gneg, DNA topoisomerase IV, B subunit, | 1e-178 | |
| TIGR01058 | 637 | TIGR01058, parE_Gpos, DNA topoisomerase IV, B subunit, | 1e-134 | |
| COG0187 | 635 | COG0187, GyrB, Type IIA topoisomerase (DNA gyrase/topo | 0.0 | |
| smart00433 | 594 | smart00433, TOP2c, TopoisomeraseII | 0.0 | |
| PRK14939 | 756 | PRK14939, gyrB, DNA gyrase subunit B; Provisional | 1e-164 | |
| PTZ00109 | 903 | PTZ00109, PTZ00109, DNA gyrase subunit b; Provisional | 1e-99 | |
| PTZ00108 | 1388 | PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; P | 2e-33 | |
| KOG0355 | 842 | KOG0355, KOG0355, KOG0355, DNA topoisomerase type II [C | 8e-61 | |
| PLN03128 | 1135 | PLN03128, PLN03128, DNA topoisomerase 2; Provisional | 9e-35 | |
| PLN03237 | 1465 | PLN03237, PLN03237, DNA topoisomerase 2; Provisional | 3e-27 | |
| cd03366 | 114 | cd03366, TOPRIM_TopoIIA_GyrB, TOPRIM_TopoIIA_GyrB: topo | 2e-44 | |
| cd01030 | 115 | cd01030, TOPRIM_TopoIIA_like, TOPRIM_TopoIIA_like: topo | 7e-42 | |
| cd03365 | 120 | cd03365, TOPRIM_TopoIIA, TOPRIM_TopoIIA: topoisomerase- | 4e-17 | |
| cd00188 | 83 | cd00188, TOPRIM, Topoisomerase-primase domain | 2e-05 | |
| pfam01751 | 89 | pfam01751, Toprim, Toprim domain | 0.001 | |
| cd00822 | 172 | cd00822, TopoII_Trans_DNA_gyrase, TopoIIA_Trans_DNA_gyr | 2e-41 | |
| pfam00204 | 173 | pfam00204, DNA_gyraseB, DNA gyrase B | 6e-37 | |
| PHA02569 | 602 | PHA02569, 39, DNA topoisomerase II large subunit; Provi | 9e-20 | |
| pfam00986 | 65 | pfam00986, DNA_gyraseB_C, DNA gyrase B subunit, carboxy | 3e-17 | |
| PRK14939 | 756 | PRK14939, gyrB, DNA gyrase subunit B; Provisional | 2e-13 | |
| PTZ00109 | 903 | PTZ00109, PTZ00109, DNA gyrase subunit b; Provisional | 2e-09 | |
| PHA02569 | 602 | PHA02569, 39, DNA topoisomerase II large subunit; Provi | 1e-16 | |
| pfam02518 | 111 | pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, | 2e-12 | |
| smart00387 | 111 | smart00387, HATPase_c, Histidine kinase-like ATPases | 7e-12 | |
| cd00075 | 103 | cd00075, HATPase_c, Histidine kinase-like ATPases; This | 2e-07 | |
| cd00329 | 107 | cd00329, TopoII_MutL_Trans, MutL_Trans: transducer doma | 2e-04 |
| >gnl|CDD|180127 PRK05559, PRK05559, DNA topoisomerase IV subunit B; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|180181 PRK05644, gyrB, DNA gyrase subunit B; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|162180 TIGR01059, gyrB, DNA gyrase, B subunit | Back alignment and domain information |
|---|
| >gnl|CDD|130127 TIGR01055, parE_Gneg, DNA topoisomerase IV, B subunit, proteobacterial | Back alignment and domain information |
|---|
| >gnl|CDD|130130 TIGR01058, parE_Gpos, DNA topoisomerase IV, B subunit, Gram-positive | Back alignment and domain information |
|---|
| >gnl|CDD|30536 COG0187, GyrB, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|128710 smart00433, TOP2c, TopoisomeraseII | Back alignment and domain information |
|---|
| >gnl|CDD|184903 PRK14939, gyrB, DNA gyrase subunit B; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|185452 PTZ00109, PTZ00109, DNA gyrase subunit b; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|185451 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|35576 KOG0355, KOG0355, KOG0355, DNA topoisomerase type II [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >gnl|CDD|178674 PLN03128, PLN03128, DNA topoisomerase 2; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|178775 PLN03237, PLN03237, DNA topoisomerase 2; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173786 cd03366, TOPRIM_TopoIIA_GyrB, TOPRIM_TopoIIA_GyrB: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to the Escherichia coli GyrB subunit | Back alignment and domain information |
|---|
| >gnl|CDD|173780 cd01030, TOPRIM_TopoIIA_like, TOPRIM_TopoIIA_like: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topoisomerase II | Back alignment and domain information |
|---|
| >gnl|CDD|173785 cd03365, TOPRIM_TopoIIA, TOPRIM_TopoIIA: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topoisomerase II | Back alignment and domain information |
|---|
| >gnl|CDD|173773 cd00188, TOPRIM, Topoisomerase-primase domain | Back alignment and domain information |
|---|
| >gnl|CDD|145089 pfam01751, Toprim, Toprim domain | Back alignment and domain information |
|---|
| >gnl|CDD|48467 cd00822, TopoII_Trans_DNA_gyrase, TopoIIA_Trans_DNA_gyrase: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIA family of DNA topoisomerases similar to the B subunits of E | Back alignment and domain information |
|---|
| >gnl|CDD|143961 pfam00204, DNA_gyraseB, DNA gyrase B | Back alignment and domain information |
|---|
| >gnl|CDD|177398 PHA02569, 39, DNA topoisomerase II large subunit; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|144542 pfam00986, DNA_gyraseB_C, DNA gyrase B subunit, carboxyl terminus | Back alignment and domain information |
|---|
| >gnl|CDD|184903 PRK14939, gyrB, DNA gyrase subunit B; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|185452 PTZ00109, PTZ00109, DNA gyrase subunit b; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|177398 PHA02569, 39, DNA topoisomerase II large subunit; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|145582 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | Back alignment and domain information |
|---|
| >gnl|CDD|128669 smart00387, HATPase_c, Histidine kinase-like ATPases | Back alignment and domain information |
|---|
| >gnl|CDD|28956 cd00075, HATPase_c, Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins | Back alignment and domain information |
|---|
| >gnl|CDD|73195 cd00329, TopoII_MutL_Trans, MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of type II DNA topoisomerases (Topo II) and DNA mismatch repair (MutL/MLH1/PMS2) proteins | Back alignment and domain information |
|---|
Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
| Identity | Alignment graph | Length | Definition | Probability |
| Target | 686 | DNA topoisomerase IV subunit B [Candidatus Liberibacter | ||
| TIGR01059 | 818 | gyrB DNA gyrase, B subunit; InterPro: IPR011557 DNA top | 100.0 | |
| PRK05644 | 725 | gyrB DNA gyrase subunit B; Validated | 100.0 | |
| PRK05559 | 633 | DNA topoisomerase IV subunit B; Reviewed | 100.0 | |
| COG0187 | 635 | GyrB Type IIA topoisomerase (DNA gyrase/topo II, topois | 100.0 | |
| PTZ00109 | 941 | DNA gyrase subunit b; Provisional | 100.0 | |
| TIGR01058 | 655 | parE_Gpos DNA topoisomerase IV, B subunit; InterPro: IP | 100.0 | |
| PTZ00108 | 1506 | DNA topoisomerase II; Provisional | 100.0 | |
| TIGR01055 | 647 | parE_Gneg DNA topoisomerase IV, B subunit; InterPro: IP | 100.0 | |
| KOG0355 | 842 | consensus | 100.0 | |
| smart00433 | 594 | TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, | 100.0 | |
| cd03366 | 114 | TOPRIM_TopoIIA_GyrB TOPRIM_TopoIIA_GyrB: topoisomerase- | 100.0 | |
| cd01030 | 115 | TOPRIM_TopoIIA_like TOPRIM_TopoIIA_like: topoisomerase- | 100.0 | |
| cd03365 | 120 | TOPRIM_TopoIIA TOPRIM_TopoIIA: topoisomerase-primase (T | 100.0 | |
| cd00188 | 83 | TOPRIM Topoisomerase-primase domain. This is a nucleoti | 96.27 | |
| pfam01751 | 89 | Toprim Toprim domain. This is a conserved region from D | 96.02 | |
| cd01027 | 81 | TOPRIM_RNase_M5_like TOPRIM_ RNase M5_like: The topoiso | 90.7 | |
| pfam00204 | 173 | DNA_gyraseB DNA gyrase B. This family represents the se | 100.0 | |
| cd00822 | 172 | TopoII_Trans_DNA_gyrase TopoIIA_Trans_DNA_gyrase: Trans | 100.0 | |
| cd03481 | 153 | TopoIIA_Trans_ScTopoIIA TopoIIA_Trans_ScTopoIIA: Transd | 99.97 | |
| pfam00986 | 65 | DNA_gyraseB_C DNA gyrase B subunit, carboxyl terminus. | 99.83 | |
| PRK04184 | 533 | DNA topoisomerase VI subunit B; Validated | 99.54 | |
| COG1389 | 538 | DNA topoisomerase VI, subunit B [DNA replication, recom | 99.19 | |
| TIGR01052 | 662 | top6b DNA topoisomerase VI, B subunit; InterPro: IPR005 | 99.28 | |
| COG0323 | 638 | MutL DNA mismatch repair enzyme (predicted ATPase) [DNA | 98.51 | |
| COG0326 | 623 | HtpG Molecular chaperone, HSP90 family [Posttranslation | 97.54 | |
| PRK05218 | 612 | heat shock protein 90; Provisional | 97.29 | |
| PTZ00272 | 701 | heat shock protein 83 kDa (Hsp83); Provisional | 97.0 | |
| PTZ00130 | 824 | heat shock protein 90; Provisional | 96.93 | |
| KOG1979 | 694 | consensus | 96.83 | |
| KOG1977 | 1142 | consensus | 95.15 | |
| PRK00095 | 612 | mutL DNA mismatch repair protein; Reviewed | 99.01 | |
| KOG1978 | 672 | consensus | 97.34 | |
| TIGR00585 | 367 | mutl DNA mismatch repair protein MutL; InterPro: IPR014 | 98.36 | |
| cd00329 | 107 | TopoII_MutL_Trans MutL_Trans: transducer domain, having | 98.33 | |
| cd00075 | 103 | HATPase_c Histidine kinase-like ATPases; This family in | 98.19 | |
| smart00387 | 111 | HATPase_c Histidine kinase-like ATPases. Histidine kina | 98.17 | |
| pfam02518 | 111 | HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-l | 98.1 | |
| PRK10755 | 355 | sensor protein BasS/PmrB; Provisional | 97.25 | |
| COG3920 | 221 | Signal transduction histidine kinase [Signal transducti | 97.07 | |
| PRK03660 | 146 | anti-sigma F factor; Provisional | 96.71 | |
| COG2172 | 146 | RsbW Anti-sigma regulatory factor (Ser/Thr protein kina | 94.8 | |
| PRK04069 | 158 | serine-protein kinase RsbW; Provisional | 94.78 | |
| PRK11107 | 920 | hybrid sensory histidine kinase BarA; Provisional | 93.71 | |
| TIGR02966 | 339 | phoR_proteo phosphate regulon sensor kinase PhoR; Inter | 93.56 | |
| PRK11466 | 912 | hybrid sensory histidine kinase TorS; Provisional | 93.42 | |
| TIGR01386 | 483 | cztS_silS_copS heavy metal sensor kinase; InterPro: IPR | 93.35 | |
| PRK11091 | 779 | aerobic respiration control sensor protein ArcB; Provis | 92.8 | |
| PRK13560 | 807 | hypothetical protein; Provisional | 97.63 | |
| COG2205 | 890 | KdpD Osmosensitive K+ channel histidine kinase [Signal | 97.63 | |
| TIGR02938 | 496 | nifL_nitrog nitrogen fixation negative regulator NifL; | 96.52 | |
| PRK11644 | 497 | sensory histidine kinase UhpB; Provisional | 96.07 | |
| COG4585 | 365 | Signal transduction histidine kinase [Signal transducti | 95.83 | |
| COG0642 | 336 | BaeS Signal transduction histidine kinase [Signal trans | 94.23 | |
| PRK10337 | 446 | sensor protein QseC; Provisional | 97.62 | |
| PRK10815 | 484 | sensor protein PhoQ; Provisional | 97.18 | |
| PRK10600 | 569 | nitrate/nitrite sensor protein NarX; Provisional | 96.29 | |
| COG3850 | 574 | NarQ Signal transduction histidine kinase, nitrate/nitr | 96.94 | |
| PRK10490 | 895 | sensor protein KdpD; Provisional | 96.93 | |
| PRK10604 | 433 | sensor protein RstB; Provisional | 96.78 | |
| PRK10549 | 467 | signal transduction histidine-protein kinase BaeS; Prov | 96.54 | |
| PRK11100 | 475 | sensory histidine kinase CreC; Provisional | 96.48 | |
| PRK09467 | 437 | envZ osmolarity sensor protein; Provisional | 96.45 | |
| PRK09470 | 461 | cpxA two-component sensor protein; Provisional | 96.67 | |
| COG5000 | 712 | NtrY Signal transduction histidine kinase involved in n | 95.43 | |
| COG3290 | 537 | CitA Signal transduction histidine kinase regulating ci | 96.6 | |
| PRK09835 | 482 | sensor kinase CusS; Provisional | 96.07 | |
| PRK09303 | 378 | adaptive-response sensory kinase; Validated | 96.57 | |
| PRK11360 | 607 | sensory histidine kinase AtoS; Provisional | 96.14 | |
| KOG0787 | 414 | consensus | 94.82 | |
| PRK13837 | 831 | two-component VirA-like sensor kinase; Provisional | 92.51 | |
| PRK10364 | 455 | sensor protein ZraS; Provisional | 95.82 | |
| PRK10547 | 662 | chemotaxis protein CheA; Provisional | 92.53 | |
| COG4191 | 603 | Signal transduction histidine kinase regulating C4-dica | 95.1 | |
| COG3851 | 497 | UhpB Signal transduction histidine kinase, glucose-6-ph | 92.68 | |
| PRK10841 | 947 | hybrid sensory kinase in two-component regulatory syste | 92.53 | |
| PRK13557 | 538 | histidine kinase; Provisional | 92.88 |
| >TIGR01059 gyrB DNA gyrase, B subunit; InterPro: IPR011557 DNA topoisomerases regulate the number of topological links between two DNA strands (i | Back alignment and domain information |
|---|
| >PRK05644 gyrB DNA gyrase subunit B; Validated | Back alignment and domain information |
|---|
| >PRK05559 DNA topoisomerase IV subunit B; Reviewed | Back alignment and domain information |
|---|
| >COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PTZ00109 DNA gyrase subunit b; Provisional | Back alignment and domain information |
|---|
| >TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit; InterPro: IPR005740 DNA topoisomerases regulate the number of topological links between two DNA strands (i | Back alignment and domain information |
|---|
| >PTZ00108 DNA topoisomerase II; Provisional | Back alignment and domain information |
|---|
| >TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit; InterPro: IPR005737 DNA topoisomerases regulate the number of topological links between two DNA strands (i | Back alignment and domain information |
|---|
| >KOG0355 consensus | Back alignment and domain information |
|---|
| >smart00433 TOP2c TopoisomeraseII | Back alignment and domain information |
|---|
| >cd03366 TOPRIM_TopoIIA_GyrB TOPRIM_TopoIIA_GyrB: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to the Escherichia coli GyrB subunit | Back alignment and domain information |
|---|
| >cd01030 TOPRIM_TopoIIA_like TOPRIM_TopoIIA_like: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topoisomerase II | Back alignment and domain information |
|---|
| >cd03365 TOPRIM_TopoIIA TOPRIM_TopoIIA: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topoisomerase II | Back alignment and domain information |
|---|
| >cd00188 TOPRIM Topoisomerase-primase domain | Back alignment and domain information |
|---|
| >pfam01751 Toprim Toprim domain | Back alignment and domain information |
|---|
| >cd01027 TOPRIM_RNase_M5_like TOPRIM_ RNase M5_like: The topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain found in Ribonuclease M5: (RNase M5) and other small primase-like proteins from bacteria and archaea | Back alignment and domain information |
|---|
| >pfam00204 DNA_gyraseB DNA gyrase B | Back alignment and domain information |
|---|
| >cd00822 TopoII_Trans_DNA_gyrase TopoIIA_Trans_DNA_gyrase: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIA family of DNA topoisomerases similar to the B subunits of E | Back alignment and domain information |
|---|
| >cd03481 TopoIIA_Trans_ScTopoIIA TopoIIA_Trans_ScTopoIIA: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topo IIA | Back alignment and domain information |
|---|
| >pfam00986 DNA_gyraseB_C DNA gyrase B subunit, carboxyl terminus | Back alignment and domain information |
|---|
| >PRK04184 DNA topoisomerase VI subunit B; Validated | Back alignment and domain information |
|---|
| >COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >TIGR01052 top6b DNA topoisomerase VI, B subunit; InterPro: IPR005734 DNA topoisomerases regulate the number of topological links between two DNA strands (i | Back alignment and domain information |
|---|
| >COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PRK05218 heat shock protein 90; Provisional | Back alignment and domain information |
|---|
| >PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional | Back alignment and domain information |
|---|
| >PTZ00130 heat shock protein 90; Provisional | Back alignment and domain information |
|---|
| >KOG1979 consensus | Back alignment and domain information |
|---|
| >KOG1977 consensus | Back alignment and domain information |
|---|
| >PRK00095 mutL DNA mismatch repair protein; Reviewed | Back alignment and domain information |
|---|
| >KOG1978 consensus | Back alignment and domain information |
|---|
| >TIGR00585 mutl DNA mismatch repair protein MutL; InterPro: IPR014763 This entry represents DNA mismatch repair proteins, such as MutL | Back alignment and domain information |
|---|
| >cd00329 TopoII_MutL_Trans MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of type II DNA topoisomerases (Topo II) and DNA mismatch repair (MutL/MLH1/PMS2) proteins | Back alignment and domain information |
|---|
| >cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins | Back alignment and domain information |
|---|
| >smart00387 HATPase_c Histidine kinase-like ATPases | Back alignment and domain information |
|---|
| >pfam02518 HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | Back alignment and domain information |
|---|
| >PRK10755 sensor protein BasS/PmrB; Provisional | Back alignment and domain information |
|---|
| >COG3920 Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK03660 anti-sigma F factor; Provisional | Back alignment and domain information |
|---|
| >COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK04069 serine-protein kinase RsbW; Provisional | Back alignment and domain information |
|---|
| >PRK11107 hybrid sensory histidine kinase BarA; Provisional | Back alignment and domain information |
|---|
| >TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR; InterPro: IPR014310 Members of this protein are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter found in most Proteobacteria, and related proteins from Gram-positive organisms are excluded | Back alignment and domain information |
|---|
| >PRK11466 hybrid sensory histidine kinase TorS; Provisional | Back alignment and domain information |
|---|
| >TIGR01386 cztS_silS_copS heavy metal sensor kinase; InterPro: IPR006290 Members of this family contain a sensor histidine kinase domain (IPR003661 from INTERPRO) and a domain found in bacterial signal proteins (IPR003660 from INTERPRO) | Back alignment and domain information |
|---|
| >PRK11091 aerobic respiration control sensor protein ArcB; Provisional | Back alignment and domain information |
|---|
| >PRK13560 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL; InterPro: IPR014285 NifL modulates the activity of the nitrogen fixation positive regulator protein NifA, acting as a negative regulator by binding NifA | Back alignment and domain information |
|---|
| >PRK11644 sensory histidine kinase UhpB; Provisional | Back alignment and domain information |
|---|
| >COG4585 Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK10337 sensor protein QseC; Provisional | Back alignment and domain information |
|---|
| >PRK10815 sensor protein PhoQ; Provisional | Back alignment and domain information |
|---|
| >PRK10600 nitrate/nitrite sensor protein NarX; Provisional | Back alignment and domain information |
|---|
| >COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK10490 sensor protein KdpD; Provisional | Back alignment and domain information |
|---|
| >PRK10604 sensor protein RstB; Provisional | Back alignment and domain information |
|---|
| >PRK10549 signal transduction histidine-protein kinase BaeS; Provisional | Back alignment and domain information |
|---|
| >PRK11100 sensory histidine kinase CreC; Provisional | Back alignment and domain information |
|---|
| >PRK09467 envZ osmolarity sensor protein; Provisional | Back alignment and domain information |
|---|
| >PRK09470 cpxA two-component sensor protein; Provisional | Back alignment and domain information |
|---|
| >COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK09835 sensor kinase CusS; Provisional | Back alignment and domain information |
|---|
| >PRK09303 adaptive-response sensory kinase; Validated | Back alignment and domain information |
|---|
| >PRK11360 sensory histidine kinase AtoS; Provisional | Back alignment and domain information |
|---|
| >KOG0787 consensus | Back alignment and domain information |
|---|
| >PRK13837 two-component VirA-like sensor kinase; Provisional | Back alignment and domain information |
|---|
| >PRK10364 sensor protein ZraS; Provisional | Back alignment and domain information |
|---|
| >PRK10547 chemotaxis protein CheA; Provisional | Back alignment and domain information |
|---|
| >COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional | Back alignment and domain information |
|---|
| >PRK13557 histidine kinase; Provisional | Back alignment and domain information |
|---|
Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
| Identity | Alignment graph | Length | Definition | E-value |
| Target | 686 | DNA topoisomerase IV subunit B [Candidatus Liberibacter | ||
| 1ei1_A | 391 | Dimerization Of E. Coli Dna Gyrase B Provides A Str | 4e-92 | |
| 1s16_A | 390 | Crystal Structure Of E. Coli Topoisomerase Iv Pare | 8e-79 | |
| 1kij_A | 390 | Crystal Structure Of The 43k Atpase Domain Of Therm | 8e-78 | |
| 3lnu_A | 408 | Crystal Structure Of Pare Subunit Length = 408 | 2e-77 | |
| 1qzr_A | 418 | Crystal Structure Of The Atpase Region Of Saccharom | 1e-47 | |
| 1zxm_A | 400 | Human Topo Iia AtpaseAMP-Pnp Length = 400 | 6e-47 | |
| 1pvg_A | 418 | Crystal Structure Of The Atpase Region Of Saccharom | 1e-45 | |
| 2xcr_B | 726 | The 3.5a Crystal Structure Of The Catalytic Core (B | 2e-81 | |
| 2xco_A | 726 | The 3.1a Crystal Structure Of The Catalytic Core (B | 2e-81 | |
| 3foe_C | 268 | Structural Insight Into The Quinolone-Dna Cleavage | 3e-72 | |
| 2zjt_A | 247 | Crystal Structure Of Dna Gyrase B' Domain Sheds Lig | 1e-66 | |
| 2xkk_A | 767 | Crystal Structure Of Moxifloxacin, Dna, And A. Baum | 3e-66 | |
| 2xkj_E | 767 | Crystal Structure Of Catalytic Core Of A. Baumannii | 3e-66 | |
| 3ig0_A | 242 | Crystal Structure Of The Second Part Of The Mycobac | 2e-65 | |
| 2xcs_B | 692 | The 2.1a Crystal Structure Of S. Aureus Gyrase Comp | 2e-63 | |
| 3l4j_A | 722 | Topoisomerase Ii-Dna Cleavage Complex, Apo Length = | 1e-42 | |
| 2rgr_A | 759 | Topoisomerase Iia Bound To G-Segment Dna Length = 7 | 4e-41 | |
| 1bgw_A | 793 | Topoisomerase Residues 410-1202 Length = 793 | 4e-41 | |
| 1aj6_A | 219 | Novobiocin-Resistant Mutant (R136h) Of The N-Termin | 2e-73 | |
| 3g7e_A | 203 | Crystal Structure Of E. Coli Gyrase B Co-Complexed | 1e-67 | |
| 1kzn_A | 205 | Crystal Structure Of E. Coli 24kda Domain In Comple | 2e-67 | |
| 3fv5_A | 201 | Crystal Structure Of E. Coli Topoisomerase Iv Co-Co | 2e-56 | |
| 3g75_A | 184 | Crystal Structure Of Staphylococcus Aureus Gyrase B | 6e-50 | |
| 1s14_A | 194 | Crystal Structure Of Escherichia Coli Topoisomerase | 5e-47 | |
| 3nuh_B | 420 | A Domain Insertion In E. Coli Gyrb Adopts A Novel F | 1e-40 | |
| 3nuh_B | 420 | A Domain Insertion In E. Coli Gyrb Adopts A Novel F | 5e-25 |
| >gi|7546302|pdb|1EI1|A Chain A, Dimerization Of E. Coli Dna Gyrase B Provides A Structural Mechanism For Activating The Atpase Catalytic Center Length = 391 | Back alignment and structure |
Score = 344 bits (881), Expect = 4e-92, Method: Composition-based stats.
Identities = 137/380 (36%), Positives = 216/380 (56%), Gaps = 16/380 (4%)
Query: 49 IRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFL 107
I++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V++ + +
Sbjct: 9 IKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSV 68
Query: 108 TVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSD 167
+V D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+SVVNALS
Sbjct: 69 SVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQ 127
Query: 168 ELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDKAGFDAARL 227
+L + + R+ I Q + G+P +PL + GT + F P + F + F+ L
Sbjct: 128 KLELVIQREGKIHRQIYEHGVPQAPLAVTGETEK-TGTMVRFWPSLETFTNVTEFEYEIL 186
Query: 228 LKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLENRSLISSEI 287
K + ++L V ++ E + F++ GG+K +++ +N++ I I
Sbjct: 187 AKRLRELSFLDSGVSIRLRDKRDGKE-------DHFHYEGGIKAFVEYLNKNKTPIHPNI 239
Query: 288 FTGKTEKKGTHRGTVEWAIAWCEEN-PEITSYCNTILTDEGGTHESGLRVALTRGIKKYA 346
F TEK G VE A+ W + I + N I +GGTH +G R A+TR + Y
Sbjct: 240 FYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYM 296
Query: 347 ELTQ--NKRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPF 404
+ K +S DD + ++SV + +P+F+ QTK KLVS + + VE + +
Sbjct: 297 DKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELL 356
Query: 405 DHYLVQNPIEATKLLEWVIE 424
YL++NP +A ++ +I+
Sbjct: 357 AEYLLENPTDAKIVVGKIID 376
|
| >gi|48425515|pdb|1S16|A Chain A, Crystal Structure Of E. Coli Topoisomerase Iv Pare 43kda Subunit Complexed With Adpnp Length = 390 | Back alignment and structure |
| >gi|21465844|pdb|1KIJ|A Chain A, Crystal Structure Of The 43k Atpase Domain Of Thermus Thermophilus Gyrase B In Complex With Novobiocin Length = 390 | Back alignment and structure |
| >gi|323462873|pdb|3LNU|A Chain A, Crystal Structure Of Pare Subunit Length = 408 | Back alignment and structure |
| >gi|37928124|pdb|1QZR|A Chain A, Crystal Structure Of The Atpase Region Of Saccharomyces Cerevisiae Topoisomerase Ii Bound To Icrf-187 (Dexrazoxane) Length = 418 | Back alignment and structure |
| >gi|75765928|pdb|1ZXM|A Chain A, Human Topo Iia AtpaseAMP-Pnp Length = 400 | Back alignment and structure |
| >gi|34810356|pdb|1PVG|A Chain A, Crystal Structure Of The Atpase Region Of Saccharomyces Cerevisiae Topoisomerase Ii Length = 418 | Back alignment and structure |
| >gi|302148634|pdb|2XCR|B Chain B, The 3.5a Crystal Structure Of The Catalytic Core (B'a' Region) Of Staphylococcus Aureus Dna Gyrase Complexed With Gsk299423 And Dna Length = 726 | Back alignment and structure |
| >gi|302148632|pdb|2XCO|A Chain A, The 3.1a Crystal Structure Of The Catalytic Core (B'a' Region) Of Staphylococcus Aureus Dna Gyrase Length = 726 | Back alignment and structure |
| >gi|224036404|pdb|3FOE|C Chain C, Structural Insight Into The Quinolone-Dna Cleavage Complex Of Type Iia Topoisomerases Length = 268 | Back alignment and structure |
| >gi|224983399|pdb|2ZJT|A Chain A, Crystal Structure Of Dna Gyrase B' Domain Sheds Lights On The Mechanism For T-Segment Navigation Length = 247 | Back alignment and structure |
| >gi|305677638|pdb|2XKK|A Chain A, Crystal Structure Of Moxifloxacin, Dna, And A. Baumannii Topo Iv (Pare-Parc Fusion Truncate) Length = 767 | Back alignment and structure |
| >gi|305677637|pdb|2XKJ|E Chain E, Crystal Structure Of Catalytic Core Of A. Baumannii Topo Iv (Pare-Parc Fusion Truncate) Length = 767 | Back alignment and structure |
| >gi|301598497|pdb|3IG0|A Chain A, Crystal Structure Of The Second Part Of The Mycobacterium Tuberculosis Dna Gyrase Reaction Core: The Toprim Domain At 2.1 A Resolution Length = 242 | Back alignment and structure |
| >gi|302148642|pdb|2XCS|B Chain B, The 2.1a Crystal Structure Of S. Aureus Gyrase Complex With Gsk299423 And Dna Length = 692 | Back alignment and structure |
| >gi|297039743|pdb|3L4J|A Chain A, Topoisomerase Ii-Dna Cleavage Complex, Apo Length = 722 | Back alignment and structure |
| >gi|163931058|pdb|2RGR|A Chain A, Topoisomerase Iia Bound To G-Segment Dna Length = 759 | Back alignment and structure |
| >gi|157830305|pdb|1BGW|A Chain A, Topoisomerase Residues 410-1202 Length = 793 | Back alignment and structure |
| >gi|157829905|pdb|1AJ6|A Chain A, Novobiocin-Resistant Mutant (R136h) Of The N-Terminal 24 Kda Fragment Of Dna Gyrase B Complexed With Novobiocin At 2.3 Angstroms Resolution Length = 219 | Back alignment and structure |
| >gi|288562964|pdb|3G7E|A Chain A, Crystal Structure Of E. Coli Gyrase B Co-Complexed With Inhibitor Length = 203 | Back alignment and structure |
| >gi|21730596|pdb|1KZN|A Chain A, Crystal Structure Of E. Coli 24kda Domain In Complex With Clorobiocin Length = 205 | Back alignment and structure |
| >gi|284793877|pdb|3FV5|A Chain A, Crystal Structure Of E. Coli Topoisomerase Iv Co-Complexed With Inhibitor Length = 201 | Back alignment and structure |
| >gi|288562960|pdb|3G75|A Chain A, Crystal Structure Of Staphylococcus Aureus Gyrase B Co- Complexed With Inhibitor Length = 184 | Back alignment and structure |
| >gi|48425513|pdb|1S14|A Chain A, Crystal Structure Of Escherichia Coli Topoisomerase Iv Pare 24kda Subunit Length = 194 | Back alignment and structure |
| >gi|302566245|pdb|3NUH|B Chain B, A Domain Insertion In E. Coli Gyrb Adopts A Novel Fold That Plays A Critical Role In Gyrase Function Length = 420 | Back alignment and structure |
| >gi|302566245|pdb|3NUH|B Chain B, A Domain Insertion In E. Coli Gyrb Adopts A Novel Fold That Plays A Critical Role In Gyrase Function Length = 420 | Back alignment and structure |
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| Identity | Alignment graph | Length | Definition | E-value |
| Target | 686 | DNA topoisomerase IV subunit B [Candidatus Liberibacter | ||
| 1ei1_A | 391 | DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HE | 1e-118 | |
| 1kij_A | 390 | DNA gyrase subunit B; topoisomerase, gyrase B-coumarin | 1e-100 | |
| 1s16_A | 390 | Topoisomerase IV subunit B; two-domain protein complexe | 8e-85 | |
| 1pvg_A | 418 | DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; | 7e-75 | |
| 3cwv_A | 369 | DNA gyrase, B subunit, truncated; structural genomics, | 7e-62 | |
| 1zxm_A | 400 | TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; G | 8e-48 | |
| 2xkj_E | 767 | Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinet | 2e-74 | |
| 3k9f_C | 268 | DNA topoisomerase 4 subunit B; quinolone, topoisomerase | 9e-61 | |
| 2xcs_B | 692 | DNA gyrase subunit B, DNA gyrase subunit A; isomerase, | 8e-55 | |
| 1bjt_A | 793 | Topoisomerase II; quaternary change, DNA-binding, DNA t | 1e-54 | |
| 3m4i_A | 242 | DNA gyrase subunit B; GYRB, toprim, type II topoisomera | 6e-65 | |
| 2zjt_A | 247 | DNA gyrase subunit B; GYRB-CTD, toprim, tail, DNA topoi | 9e-55 | |
| 3l4j_A | 757 | DNA topoisomerase 2; topoisomerase, protein-DNA complex | 1e-56 | |
| 3nuh_B | 420 | DNA gyrase subunit B; topoisomerase, supercoiling, spec | 1e-56 | |
| 3nuh_B | 420 | DNA gyrase subunit B; topoisomerase, supercoiling, spec | 2e-19 | |
| 3fv5_A | 201 | DNA topoisomerase 4 subunit B; topoisomerase IV B subun | 3e-56 | |
| 3g7e_A | 203 | DNA gyrase subunit B; isomerase; HET: DNA B46; 2.20A {E | 4e-55 | |
| 3g75_A | 184 | DNA gyrase subunit B; antibiotic resistance, isomerase; | 2e-44 | |
| 2q2e_B | 621 | Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO1 | 8e-52 | |
| 2zbk_B | 530 | Type 2 DNA topoisomerase 6 subunit B; DNA binding prote | 5e-24 | |
| 1mu5_A | 471 | Type II DNA topoisomerase VI subunit B; GHKL ATPase, he | 5e-12 | |
| 3na3_A | 348 | DNA mismatch repair protein MLH1; MUTL protein homolog | 6e-06 | |
| 1h7s_A | 365 | PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatc | 8e-06 | |
| 3h4l_A | 367 | DNA mismatch repair protein PMS1; ATP binding, DNA repa | 7e-08 | |
| 1b63_A | 333 | MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Esc | 0.001 |
| >1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Length = 391 | Back alignment and structure |
|---|
Score = 420 bits (1082), Expect = e-118
Identities = 145/402 (36%), Positives = 232/402 (57%), Gaps = 16/402 (3%)
Query: 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEV 99
S++ D+SSI++L+GL+ VR RPGMYIG TD+ LHH+ EV+DNA+DE +AG+ I V
Sbjct: 1 SNSSDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIV 60
Query: 100 SLDGNGFLTVVDNGRGIPVENHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGI 159
++ + ++V D+GRGIP HP+ S E+I+T LHAGGKFD+++Y++SGGLHGVG+
Sbjct: 61 TIHADNSVSVQDDGRGIPTGIHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV 119
Query: 160 SVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKVRNKRGTRITFRPDPKIFGDK 219
SVVNALS +L + + R+ I Q + G+P +PL + K GT + F P + F +
Sbjct: 120 SVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE-KTGTMVRFWPSLETFTNV 178
Query: 220 AGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279
F+ L K + ++L V ++ +++ F++ GG+K +++ +N
Sbjct: 179 TEFEYEILAKRLRELSFLDSGVSIRLRDKRD-------GKEDHFHYEGGIKAFVEYLNKN 231
Query: 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEE-NPEITSYCNTILTDEGGTHESGLRVAL 338
++ I IF TEK G VE A+ W + I + N I +GGTH +G R A+
Sbjct: 232 KTPIHPNIFYFSTEKDGI---GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAM 288
Query: 339 TRGIKKYAELTQN--KRAISIISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTV 396
TR + Y + K +S DD + ++SV + +P+F+ QTK KLVS + + V
Sbjct: 289 TRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAV 348
Query: 397 ENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQREV 438
E + + YL++NP +A ++ +I+ + R R+ RE+
Sbjct: 349 EQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREM 390
|
| >1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2 Length = 390 | Back alignment and structure |
|---|
| >1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Length = 390 | Back alignment and structure |
|---|
| >1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A* Length = 418 | Back alignment and structure |
|---|
| >3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, ATP-binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus dk 1622} Length = 369 | Back alignment and structure |
|---|
| >1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A* Length = 400 | Back alignment and structure |
|---|
| >2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A* Length = 767 | Back alignment and structure |
|---|
| >3k9f_C DNA topoisomerase 4 subunit B; quinolone, topoisomerase, protein-DNA cleavage complex; HET: DNA LFX; 2.90A {Streptococcus pneumoniae} PDB: 3fof_C* 3foe_C* Length = 268 | Back alignment and structure |
|---|
| >2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xcr_B* 2xcq_A* 2xco_A* Length = 692 | Back alignment and structure |
|---|
| >1bjt_A Topoisomerase II; quaternary change, DNA-binding, DNA topology; 2.50A {Saccharomyces cerevisiae} SCOP: e.11.1.1 PDB: 1bgw_A 2rgr_A* Length = 793 | Back alignment and structure |
|---|
| >3m4i_A DNA gyrase subunit B; GYRB, toprim, type II topoisomerase, tuberculosi quinolone binding site, DNA binding site, ATP-binding; HET: DNA; 1.95A {Mycobacterium tuberculosis} PDB: 3ig0_A* 2zjt_A* Length = 242 | Back alignment and structure |
|---|
| >2zjt_A DNA gyrase subunit B; GYRB-CTD, toprim, tail, DNA topoisomerase II, G- segment, T-segment, ATP-binding, nucleotide-binding; HET: DNA; 2.80A {Mycobacterium tuberculosis} Length = 247 | Back alignment and structure |
|---|
| >3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently linked comple supercoiling; HET: DNA PTR TSP; 2.48A {Saccharomyces cerevisiae} PDB: 3l4k_A* 1bjt_A 1bgw_A 2rgr_A* Length = 757 | Back alignment and structure |
|---|
| >3nuh_B DNA gyrase subunit B; topoisomerase, supercoiling, specialization, isomera; HET: DNA; 3.10A {Escherichia coli} Length = 420 | Back alignment and structure |
|---|
| >3nuh_B DNA gyrase subunit B; topoisomerase, supercoiling, specialization, isomera; HET: DNA; 3.10A {Escherichia coli} Length = 420 | Back alignment and structure |
|---|
| >3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A* Length = 201 | Back alignment and structure |
|---|
| >3g7e_A DNA gyrase subunit B; isomerase; HET: DNA B46; 2.20A {Escherichia coli} PDB: 1kzn_A* 1aj6_A* Length = 203 | Back alignment and structure |
|---|
| >3g75_A DNA gyrase subunit B; antibiotic resistance, isomerase; HET: DNA B48; 2.30A {Staphylococcus aureus} PDB: 3g7b_A* Length = 184 | Back alignment and structure |
|---|
| >2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} Length = 621 | Back alignment and structure |
|---|
| >2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} Length = 530 | Back alignment and structure |
|---|
| >1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A* Length = 471 | Back alignment and structure |
|---|
| >3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens} Length = 348 | Back alignment and structure |
|---|
| >1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A* Length = 365 | Back alignment and structure |
|---|
| >3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae} Length = 367 | Back alignment and structure |
|---|
| >1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A* Length = 333 | Back alignment and structure |
|---|
Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
| Identity | Alignment graph | Length | Definition | Probability |
| Target | 686 | DNA topoisomerase IV subunit B [Candidatus Liberibacter | ||
| 1ei1_A | 391 | DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HE | 100.0 | |
| 1kij_A | 390 | DNA gyrase subunit B; topoisomerase, gyrase B-coumarin | 100.0 | |
| 1s16_A | 390 | Topoisomerase IV subunit B; two-domain protein complexe | 100.0 | |
| 1pvg_A | 418 | DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; | 100.0 | |
| 1zxm_A | 400 | TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; G | 100.0 | |
| 3cwv_A | 369 | DNA gyrase, B subunit, truncated; structural genomics, | 100.0 | |
| 3nuh_B | 420 | DNA gyrase subunit B; topoisomerase, supercoiling, spec | 100.0 | |
| 2xkj_E | 767 | Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinet | 100.0 | |
| 3k9f_C | 268 | DNA topoisomerase 4 subunit B; quinolone, topoisomerase | 100.0 | |
| 3m4i_A | 242 | DNA gyrase subunit B; GYRB, toprim, type II topoisomera | 100.0 | |
| 3l4j_A | 757 | DNA topoisomerase 2; topoisomerase, protein-DNA complex | 100.0 | |
| 2xcs_B | 692 | DNA gyrase subunit B, DNA gyrase subunit A; isomerase, | 100.0 | |
| 3fv5_A | 201 | DNA topoisomerase 4 subunit B; topoisomerase IV B subun | 100.0 | |
| 3g7e_A | 203 | DNA gyrase subunit B; isomerase; HET: DNA B46; 2.20A {E | 100.0 | |
| 3g75_A | 184 | DNA gyrase subunit B; antibiotic resistance, isomerase; | 100.0 | |
| 3h4l_A | 367 | DNA mismatch repair protein PMS1; ATP binding, DNA repa | 99.56 | |
| 1h7s_A | 365 | PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatc | 99.41 | |
| 3na3_A | 348 | DNA mismatch repair protein MLH1; MUTL protein homolog | 99.39 | |
| 2zbk_B | 530 | Type 2 DNA topoisomerase 6 subunit B; DNA binding prote | 99.0 | |
| 1b63_A | 333 | MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Esc | 98.97 | |
| 2cg9_A | 677 | ATP-dependent molecular chaperone HSP82; chaperone comp | 98.19 | |
| 2o1u_A | 666 | Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP- | 98.09 | |
| 2wer_A | 220 | ATP-dependent molecular chaperone HSP82; ATPase, cytopl | 98.05 | |
| 1uyl_A | 236 | HSP 86, heat shock protein HSP 90-alpha; ATPase, chaper | 98.0 | |
| 1yc1_A | 264 | HSP 86, heat shock protein HSP 90-alpha; cell-cycle, ca | 97.9 | |
| 1y4s_A | 559 | Chaperone protein HTPG; HSP90, molecular chaperone, ATP | 97.75 | |
| 2gqp_A | 236 | Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, liga | 97.72 | |
| 3peh_A | 281 | Endoplasmin homolog; structural genomics, structural ge | 97.71 | |
| 2ioq_A | 624 | Chaperone protein HTPG; heat shock protein, HSP90; 3.50 | 97.66 | |
| 2ior_A | 235 | Chaperone protein HTPG; heat shock protein, HSP90; HET: | 97.46 | |
| 1qy5_A | 269 | Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1 | 97.46 | |
| 2q2e_B | 621 | Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO1 | 100.0 | |
| 1mu5_A | 471 | Type II DNA topoisomerase VI subunit B; GHKL ATPase, he | 99.69 | |
| 1gkz_A | 388 | [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kin | 97.63 | |
| 2btz_A | 394 | Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif r | 97.62 | |
| 2q8g_A | 407 | [pyruvate dehydrogenase [lipoamide]] kinase isozyme 1; | 97.58 | |
| 1th8_A | 145 | Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, | 97.33 | |
| 2e0a_A | 394 | Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-bind | 97.26 | |
| 3jz3_A | 222 | Sensor protein QSEC; helix-turn-helix, kinase domain, A | 97.25 | |
| 1y8o_A | 419 | [pyruvate dehydrogenase [lipoamide]] kinase isozyme 3; | 97.22 | |
| 3a0y_A | 152 | Sensor protein; ATP-LID, kinase, phosphoprotein, transf | 97.14 | |
| 1ysr_A | 150 | Sensor-type histidine kinase PRRB; ATP-binding domain, | 97.05 | |
| 1bxd_A | 161 | ENVZ(290-450), protein (osmolarity sensor protein (ENVZ | 96.88 | |
| 1id0_A | 152 | PHOQ histidine kinase; PHOQ/PHOP, signal transduction, | 96.69 | |
| 3d36_A | 244 | Sporulation kinase B; GHKL ATPase, four helix bundle, c | 96.56 | |
| 2c2a_A | 258 | Sensor histidine kinase; phosphotransfer, PHOQ, selenom | 96.48 | |
| 1r62_A | 160 | Nitrogen regulation protein NR(II); PII, histidine kina | 94.46 | |
| 3ied_A | 272 | Heat shock protein; HSP90, chaperone, structural genomi | 97.62 | |
| 3ke6_A | 399 | Protein RV1364C/MT1410; anti-sigma factor, anti-sigma f | 96.84 | |
| 3ehg_A | 128 | Sensor kinase (YOCF protein); GHL ATPase domain, transf | 96.21 | |
| 1ixm_A | 192 | SPO0B, protein (sporulation response regulatory protein | 95.14 | |
| 3ehh_A | 218 | Sensor kinase (YOCF protein); four-helix bundle, GHL AT | 95.05 | |
| 3a0r_A | 349 | Sensor protein; four helix bundle, PAS fold, kinase, ph | 95.95 |
| >1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=0 Score=897.12 Aligned_cols=386 Identities=38% Similarity=0.656 Sum_probs=363.1
Q ss_pred CCCCCHHHEEECCCCHHHHCCCCEEECCCCC-CCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEECCCCCCCC
Q ss_conf 1236975602311210343269815467775-502202443666678777618997699998289839999669843444
Q gi|254780222|r 41 SDNYDASSIRILEGLEPVRMRPGMYIGGTDE-KALHHLFSEVIDNAMDEVIAGYANLIEVSLDGNGFLTVVDNGRGIPVE 119 (686)
Q Consensus 41 ~~~Y~~~~i~~L~glE~VrkRP~mYIGst~~-~GL~~i~~EIldNavDe~~~g~~~~I~V~i~~dg~IsV~ddGrGIPv~ 119 (686)
+++|||++||+|+||||||+|||||||||+. +|||||||||||||+||++||||++|+|+|++||+|||+||||||||+
T Consensus 1 ~~~~d~~~i~~L~~lE~Vr~RP~mYiGs~~~~~Gl~~i~~Eil~Na~De~~~g~~~~I~V~i~~dgsisV~ddGrGIPv~ 80 (391)
T 1ei1_A 1 SNSSDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTG 80 (391)
T ss_dssp CCCCSGGGCEECCTTHHHHHCTHHHHCCSSSSHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECTTSCEEEEECSSCCCCS
T ss_pred CCCCCHHHCEEECCCHHHHCCCCCEECCCCCCCCCEEEEEEEEECHHHHHCCCCCCEEEEEECCCCEEEEEECCCCCCCC
T ss_conf 99789777846035227762998876468988722068888888432352149986799999279829999799867677
Q ss_pred CCCCCCCCEEEEEEEEEEECCCCCCCCCEEEECCCCCHHHHHHHHEEEEEEEEEECCCEEEEEEEECCCEECCCEECCCC
Q ss_conf 17665787012345452002477777741563144538898762032126999941883899997279451131121676
Q gi|254780222|r 120 NHPKFPNKSTLEIILTTLHAGGKFDNSTYEISGGLHGVGISVVNALSDELHVTVARQNTIFSQKFSRGIPLSPLEKKEKV 199 (686)
Q Consensus 120 ~h~k~~~~~~~Elif~~L~aggnfdd~~yk~sgGlnGvGaklvNalS~~f~Vev~r~gk~y~q~f~~g~~~~~~~~i~~~ 199 (686)
+||+ +++|+||||||+||||||||+++|++||||||||||||||||++|+|+++|+|+.|+|+|++||+..++++++++
T Consensus 81 ~h~~-~~~~~~Elif~~L~tg~nfd~~~~~~sgG~nGvGakl~NalS~~f~v~~~~~gk~~~q~f~~g~~~~~~~~~~~~ 159 (391)
T 1ei1_A 81 IHPE-EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGET 159 (391)
T ss_dssp BCTT-TSSBHHHHHHHSTTEESCSSSSSCSSCSCCSSCHHHHHHHTEEEEEEEEEETTEEEEEEEETTEESSCCEEEEEC
T ss_pred CCCC-CCCCEEEEEEEEEECCCCCCCCCCEEECCCCCCCEEEEEEEECCEEEEEEECCEEEEEEEECCEECCCCEEECCC
T ss_conf 7666-685100899999713677799874331688765427999961555999996998999998099397884050575
Q ss_pred CCCCCEEEEEEECHHHEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCHHHHHCCCCC
Q ss_conf 77885399999842432001222289999988887530577359995164532224554112343158612221002467
Q gi|254780222|r 200 RNKRGTRITFRPDPKIFGDKAGFDAARLLKMTQSKAYLSGRVKTCWSCDKEIAEKYGIPEKEEFYFPGGLKTYLQTKLEN 279 (686)
Q Consensus 200 ~~k~GT~ItF~PD~~iFg~~~~~d~~~l~~rl~~~A~L~~gl~i~~~~~~~~~~~~~~~~~~~f~~~~Gi~dyv~~~~~~ 279 (686)
+++||+|+|+||+++|+....++.+.|.+|++++|||+|||+|.|++++. +....|+|++||++|+++++..
T Consensus 160 -~~~gT~I~F~PD~~~F~~~~~~~~~~l~~r~~~~A~l~~gl~i~~~d~~~-------~~~~~~~~~~gl~~~~~~l~~~ 231 (391)
T 1ei1_A 160 -EKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLDSGVSIRLRDKRD-------GKEDHFHYEGGIKAFVEYLNKN 231 (391)
T ss_dssp -SCCEEEEEEEECTTTCCSCCSCCHHHHHHHHHHHHHHSTTCEEEEEETTT-------CCEEEECCCSHHHHHHHHHHHT
T ss_pred -CCCCCEEEEEECHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECC-------CCEEEEECCCCHHHHHHHHCCC
T ss_conf -78975899997978817865566999999999985508997799996047-------8268887076499999986258
Q ss_pred CCCCCCCCEEEEEEECCCEEEEEEEEEEECCCCCC-EEEEEEECCCCCCCEEECCHHHHHHHHHHHHHHHCC--CCCCCC
Q ss_conf 76667752033332148015589998541467774-278883000655752413046789999998763018--833222
Q gi|254780222|r 280 RSLISSEIFTGKTEKKGTHRGTVEWAIAWCEENPE-ITSYCNTILTDEGGTHESGLRVALTRGIKKYAELTQ--NKRAIS 356 (686)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~veval~~~~~~~~-~~SFVN~I~T~~GGTHv~g~~~ai~k~i~~~~~~~~--~kk~~~ 356 (686)
..++++.++....+.+. +.|+||++|++++.+ ++||||+|+|++|||||+||+++|+++|++|+++.+ ++++.+
T Consensus 232 ~~~~~~~~~~~~~~~~~---~~veva~~~~~~~~~~~~SfVN~I~T~~GGTHv~g~~~~l~~~i~~~~~k~~~~k~~~~~ 308 (391)
T 1ei1_A 232 KTPIHPNIFYFSTEKDG---IGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVS 308 (391)
T ss_dssp SCBSSSCCEEEEEEETT---EEEEEEEEEBSSCCEEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHTTHHHHHCCC
T ss_pred CCCCCCCCEEEEEEECC---EEEEEEEEECCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 87679976899976578---289999984488836899986322489997979999999999999998775440123456
Q ss_pred CCCCCCCCCEEEEEEEEEEHHHCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 33222236426999977634560764466202523200001210158899977401356889999999999654544334
Q gi|254780222|r 357 IISDDLMISAVGILSVFIREPEFAGQTKTKLVSLDAQRTVENALRDPFDHYLVQNPIEATKLLEWVIERSEERLRRRKQR 436 (686)
Q Consensus 357 i~~~dIk~~L~~~Isv~I~nP~FesQTKekL~s~~~~~~v~~~i~~~l~~~l~~n~~~a~~I~~~~~~~a~~r~~~~k~k 436 (686)
++++||+++|++||+|+|+||+|+||||++|+||++++++++.+++.|..||++||..++.|++++++++++|++|+++|
T Consensus 309 ~~~~~Ik~~l~~~vs~~i~nP~F~sQTKekL~s~~~~~~v~~~v~~~l~~~l~~n~~~a~~I~~k~i~~a~ar~~a~kar 388 (391)
T 1ei1_A 309 ATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAR 388 (391)
T ss_dssp CCHHHHTTTEEEEEEEECSSCCBSSTTCCSBCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88889970949999998589967782017636974787889999999999999797999999999999999999998877
Q ss_pred HH
Q ss_conf 44
Q gi|254780222|r 437 EV 438 (686)
Q Consensus 437 ~~ 438 (686)
++
T Consensus 389 el 390 (391)
T 1ei1_A 389 EM 390 (391)
T ss_dssp TT
T ss_pred CC
T ss_conf 04
|