254780226
translation-associated GTPase
GeneID in NCBI database: | 8209207 | Locus tag: | CLIBASIA_00555 |
Protein GI in NCBI database: | 254780226 | Protein Accession: | YP_003064639.1 |
Gene range: | +(113918, 115021) | Protein Length: | 367aa |
Gene description: | translation-associated GTPase | ||
COG prediction: | [J] Predicted GTPase, probable translation factor | ||
KEGG prediction: | translation-associated GTPase; K06942 | ||
SEED prediction: | GTP-binding and nucleic acid-binding protein YchF | ||
Pathway involved in KEGG: | not defined | ||
Subsystem involved in SEED: | Universal GTPases | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
Identity | Alignment graph | Length | Definition | E-value | |
Target | 367 | translation-associated GTPase [Candidatus Liberibacter | |||
254780648 | 335 | GTPase ObgE [Candidatus Liberibacter asiaticus str | 4e-12 | ||
255764471 | 470 | GTP-binding protein EngA [Candidatus Liberibacter | 6e-05 | ||
254780809 | 440 | tRNA modification GTPase TrmE [Candidatus Liberiba | 0.005 |
>gi|254780648|ref|YP_003065061.1| GTPase ObgE [Candidatus Liberibacter asiaticus str. psy62] Length = 335 | Back alignment |
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Score = 63.9 bits (154), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 37/108 (34%), Positives = 57/108 (52%), Gaps = 19/108 (17%) Query: 6 GIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAESKDLV 65 GIIGLPN GKST ++TR A + A+YPF T+ PN G V K+ + Sbjct: 163 GIIGLPNAGKSTFLASVTR-AKPKIADYPFTTLYPNLGIVK------------EGYKEFI 209 Query: 66 PTRMSFVDIAGLVRGASKGEGLGNQFLAHIREVDAIIHVLRCFKDENI 113 DI G+++ A +G G+G++FL H ++H++ +EN+ Sbjct: 210 -----LADIPGIIKNAHQGAGIGDRFLKHTERTHVLLHIVSAL-EENV 251 |
>gi|255764471|ref|YP_003064835.2| GTP-binding protein EngA [Candidatus Liberibacter asiaticus str. psy62] Length = 470 | Back alignment |
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Score = 40.0 bits (92), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 18/37 (48%), Positives = 22/37 (59%) Query: 1 MGFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCT 37 M + I+G PNVGKSTLFN L + A N+P T Sbjct: 1 MIYTIAIVGAPNVGKSTLFNRLVKKKMAVVGNHPGIT 37 |
>gi|254780809|ref|YP_003065222.1| tRNA modification GTPase TrmE [Candidatus Liberibacter asiaticus str. psy62] Length = 440 | Back alignment |
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Score = 33.5 bits (75), Expect = 0.005, Method: Compositional matrix adjust. Identities = 16/36 (44%), Positives = 21/36 (58%) Query: 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCT 37 G+K I+G N GKS+LFNAL + A + P T Sbjct: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT 254 |
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 367 | translation-associated GTPase [Candidatus Liberibacter | |||
315122334 | 367 | translation-associated GTPase [Candidatus Liberibacter | 1 | 0.0 | |
150397466 | 367 | GTP-dependent nucleic acid-binding protein EngD [Sinorh | 1 | 1e-156 | |
15966110 | 367 | translation-associated GTPase [Sinorhizobium meliloti 1 | 1 | 1e-155 | |
241205735 | 367 | GTP-dependent nucleic acid-binding protein EngD [Rhizob | 1 | 1e-154 | |
86282735 | 431 | putative GTP-binding protein [Rhizobium etli CFN 42] Le | 1 | 1e-153 | |
162329633 | 367 | translation-associated GTPase [Rhizobium etli CFN 42] L | 1 | 1e-153 | |
190892774 | 367 | putative GTP-binding protein [Rhizobium etli CIAT 652] | 1 | 1e-153 | |
218674103 | 367 | translation-associated GTPase [Rhizobium etli GR56] Len | 1 | 1e-153 | |
116253221 | 371 | GTP-dependent nucleic acid-binding protein EngD [Rhizob | 1 | 1e-153 | |
209550350 | 367 | GTP-dependent nucleic acid-binding protein EngD [Rhizob | 1 | 1e-153 |
>gi|315122334|ref|YP_004062823.1| translation-associated GTPase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 367 | Back alignment and organism information |
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Score = 663 bits (1711), Expect = 0.0, Method: Compositional matrix adjust. Identities = 326/367 (88%), Positives = 353/367 (96%) Query: 1 MGFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAE 60 MGFKCGI+GLPNVGKSTLFNALTRTA+AQAANYPFCTIEPNSGEVAVPDPRMHKLAEIA+ Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTRTATAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAK 60 Query: 61 SKDLVPTRMSFVDIAGLVRGASKGEGLGNQFLAHIREVDAIIHVLRCFKDENIIHVEGRI 120 SKDLVPT MSF+DIAG+VRGASKGEGLGNQFLA+IREVDAIIHVLRCF DENIIHVEGRI Sbjct: 61 SKDLVPTSMSFIDIAGIVRGASKGEGLGNQFLANIREVDAIIHVLRCFDDENIIHVEGRI 120 Query: 121 DPINDIETIETELMLSDLERLERLFEKNKKYRNHKSEEIVLLQSIISSSLRLIEEGKPVR 180 +PINDIETIETELMLSDLERLERLFEKNKK++NHKSE I L QSIISSSLRLIEEGK VR Sbjct: 121 NPINDIETIETELMLSDLERLERLFEKNKKHKNHKSENIQLTQSIISSSLRLIEEGKTVR 180 Query: 181 SLLESLDSDAIPIFKSLNLLTAKPILYICNVSEHDCKKGNIYTEAVQRLASQQNAEMIII 240 SLL+SLDSDA+ IFKS NLLTAKP+LYICNVSE DCKKGN++TEA+Q+LA+QQNAEMIII Sbjct: 181 SLLQSLDSDALSIFKSFNLLTAKPMLYICNVSESDCKKGNMHTEAIQKLATQQNAEMIII 240 Query: 241 SAAIEAEISQLPEEERALFMEELDISISGLELLIRSGYRLLDLITYFTVGPKETRAWTIP 300 SAAIE EISQLPEEERALFME+L +S+SGLELLIRSGYRLLDLITYFTVGPKETRAWTI Sbjct: 241 SAAIEEEISQLPEEERALFMEDLGVSVSGLELLIRSGYRLLDLITYFTVGPKETRAWTIL 300 Query: 301 RGTNAQKAAGVIHTDFEKGFIRALTISYKDYVAMGGENAAKEAGKARDEGKEYIVKDGDI 360 RGTNAQKAAG IH+DFE+GFIRALTISY+DY+AMGGE AAKE+GKARDEGK+YIVKDGDI Sbjct: 301 RGTNAQKAAGFIHSDFERGFIRALTISYEDYIAMGGERAAKESGKARDEGKDYIVKDGDI 360 Query: 361 LHFRFNV 367 +HFRFNV Sbjct: 361 MHFRFNV 367 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|150397466|ref|YP_001327933.1| GTP-dependent nucleic acid-binding protein EngD [Sinorhizobium medicae WSM419] Length = 367 | Back alignment and organism information |
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>gi|15966110|ref|NP_386463.1| translation-associated GTPase [Sinorhizobium meliloti 1021] Length = 367 | Back alignment and organism information |
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>gi|241205735|ref|YP_002976831.1| GTP-dependent nucleic acid-binding protein EngD [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 367 | Back alignment and organism information |
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>gi|86282735|gb|ABC91798.1| putative GTP-binding protein [Rhizobium etli CFN 42] Length = 431 | Back alignment and organism information |
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>gi|162329633|ref|YP_470525.2| translation-associated GTPase [Rhizobium etli CFN 42] Length = 367 | Back alignment and organism information |
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>gi|190892774|ref|YP_001979316.1| putative GTP-binding protein [Rhizobium etli CIAT 652] Length = 367 | Back alignment and organism information |
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>gi|218674103|ref|ZP_03523772.1| translation-associated GTPase [Rhizobium etli GR56] Length = 367 | Back alignment and organism information |
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>gi|116253221|ref|YP_769059.1| GTP-dependent nucleic acid-binding protein EngD [Rhizobium leguminosarum bv. viciae 3841] Length = 371 | Back alignment and organism information |
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>gi|209550350|ref|YP_002282267.1| GTP-dependent nucleic acid-binding protein EngD [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 367 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 367 | translation-associated GTPase [Candidatus Liberibacter | ||
PRK09601 | 364 | PRK09601, PRK09601, GTP-binding protein YchF; Reviewed | 0.0 | |
PTZ00258 | 390 | PTZ00258, PTZ00258, GTP-binding protein; Provisional | 1e-137 | |
KOG1491 | 391 | KOG1491, KOG1491, KOG1491, Predicted GTP-binding protei | 1e-105 | |
TIGR00092 | 368 | TIGR00092, TIGR00092, GTP-binding protein YchF | 1e-100 | |
PRK09602 | 396 | PRK09602, PRK09602, translation-associated GTPase; Revi | 2e-34 | |
COG1163 | 365 | COG1163, DRG, Predicted GTPase [General function predic | 1e-14 | |
COG0012 | 372 | COG0012, COG0012, Predicted GTPase, probable translatio | 1e-136 | |
cd01900 | 274 | cd01900, YchF, YchF subfamily | 1e-115 | |
cd01881 | 176 | cd01881, Obg_like, The Obg-like subfamily consists of f | 5e-46 | |
pfam06071 | 84 | pfam06071, YchF-GTPase_C, Protein of unknown function ( | 2e-43 | |
cd04867 | 83 | cd04867, TGS_YchF_C, TGS_YchF_C: This subfamily represe | 8e-40 | |
cd04938 | 76 | cd04938, TGS_Obg-like, TGS_Obg-like: The C-terminal TGS | 4e-10 | |
cd01616 | 60 | cd01616, TGS, The TGS domain, named after the ThrRS, GT | 1e-06 | |
cd01899 | 318 | cd01899, Ygr210, Ygr210 subfamily | 5e-29 | |
PRK12297 | 424 | PRK12297, obgE, GTPase CgtA; Reviewed | 2e-24 | |
TIGR02729 | 329 | TIGR02729, Obg_CgtA, Obg family GTPase CgtA | 1e-22 | |
cd01898 | 170 | cd01898, Obg, Obg subfamily | 1e-20 | |
COG0536 | 369 | COG0536, Obg, Predicted GTPase [General function predic | 2e-20 | |
PRK12299 | 335 | PRK12299, obgE, GTPase CgtA; Reviewed | 8e-20 | |
PRK12296 | 500 | PRK12296, obgE, GTPase CgtA; Reviewed | 3e-19 | |
pfam01926 | 106 | pfam01926, MMR_HSR1, GTPase of unknown function | 9e-18 | |
cd01896 | 233 | cd01896, DRG, The developmentally regulated GTP-binding | 2e-16 | |
PRK12298 | 390 | PRK12298, obgE, GTPase CgtA; Reviewed | 2e-16 | |
KOG1487 | 358 | KOG1487, KOG1487, KOG1487, GTP-binding protein DRG1 (OD | 3e-07 | |
COG2262 | 411 | COG2262, HflX, GTPases [General function prediction onl | 6e-05 | |
KOG1489 | 366 | KOG1489, KOG1489, KOG1489, Predicted GTP-binding protei | 9e-14 | |
cd00880 | 163 | cd00880, Era_like, Era (E | 1e-12 | |
KOG1486 | 364 | KOG1486, KOG1486, KOG1486, GTP-binding protein DRG2 (OD | 8e-10 | |
COG1160 | 444 | COG1160, COG1160, Predicted GTPases [General function p | 2e-06 | |
COG0370 | 653 | COG0370, FeoB, Fe2+ transport system protein B [Inorgan | 2e-05 | |
TIGR00231 | 161 | TIGR00231, small_GTP, small GTP-binding protein domain | 9e-05 | |
COG1159 | 298 | COG1159, Era, GTPase [General function prediction only] | 6e-04 | |
cd01878 | 204 | cd01878, HflX, HflX subfamily | 0.002 | |
TIGR03594 | 429 | TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA | 5e-06 | |
cd01879 | 158 | cd01879, FeoB, Ferrous iron transport protein B (FeoB) | 6e-06 | |
cd01894 | 157 | cd01894, EngA1, EngA1 subfamily | 7e-06 | |
cd01856 | 171 | cd01856, YlqF, YlqF | 2e-05 | |
PRK00093 | 435 | PRK00093, PRK00093, GTP-binding protein Der; Reviewed | 2e-05 | |
PRK00089 | 292 | PRK00089, era, GTPase Era; Reviewed | 3e-05 | |
pfam02421 | 188 | pfam02421, FeoB_N, Ferrous iron transport protein B | 5e-05 | |
cd01897 | 168 | cd01897, NOG, NOG1 is a nucleolar GTP-binding protein p | 6e-05 | |
cd04163 | 168 | cd04163, Era, Era subfamily | 1e-04 | |
TIGR03596 | 276 | TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-binding | 2e-04 | |
PRK05291 | 449 | PRK05291, trmE, tRNA modification GTPase TrmE; Reviewed | 3e-04 | |
PRK09563 | 287 | PRK09563, rbgA, GTPase YlqF; Reviewed | 3e-04 | |
cd04164 | 157 | cd04164, trmE, TrmE (MnmE, ThdF, MSS1) is a 3-domain pr | 4e-04 | |
COG1161 | 322 | COG1161, COG1161, Predicted GTPases [General function p | 4e-04 | |
TIGR03156 | 351 | TIGR03156, GTP_HflX, GTP-binding protein HflX | 4e-04 | |
TIGR00450 | 442 | TIGR00450, mnmE_trmE_thdF, tRNA modification GTPase Trm | 6e-04 | |
TIGR00437 | 591 | TIGR00437, feoB, ferrous iron transporter FeoB | 8e-04 | |
COG0486 | 454 | COG0486, ThdF, Predicted GTPase [General function predi | 0.001 | |
TIGR03594 | 429 | TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA | 0.001 | |
COG1084 | 346 | COG1084, COG1084, Predicted GTPase [General function pr | 0.002 | |
cd01849 | 155 | cd01849, YlqF_related_GTPase, YlqF-related GTPases | 0.002 | |
PRK00093 | 435 | PRK00093, PRK00093, GTP-binding protein Der; Reviewed | 0.002 | |
PRK09554 | 772 | PRK09554, feoB, ferrous iron transport protein B; Revie | 0.002 | |
cd04178 | 172 | cd04178, Nucleostemin_like, Nucleostemin-like | 0.004 |
>gnl|CDD|181981 PRK09601, PRK09601, GTP-binding protein YchF; Reviewed | Back alignment and domain information |
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>gnl|CDD|185530 PTZ00258, PTZ00258, GTP-binding protein; Provisional | Back alignment and domain information |
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>gnl|CDD|36704 KOG1491, KOG1491, KOG1491, Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
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>gnl|CDD|129200 TIGR00092, TIGR00092, GTP-binding protein YchF | Back alignment and domain information |
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>gnl|CDD|181982 PRK09602, PRK09602, translation-associated GTPase; Reviewed | Back alignment and domain information |
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>gnl|CDD|31357 COG1163, DRG, Predicted GTPase [General function prediction only] | Back alignment and domain information |
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>gnl|CDD|30362 COG0012, COG0012, Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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>gnl|CDD|133300 cd01900, YchF, YchF subfamily | Back alignment and domain information |
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>gnl|CDD|133281 cd01881, Obg_like, The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
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>gnl|CDD|114773 pfam06071, YchF-GTPase_C, Protein of unknown function (DUF933) | Back alignment and domain information |
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>gnl|CDD|133440 cd04867, TGS_YchF_C, TGS_YchF_C: This subfamily represents TGS domain-containing YchF GTP-binding protein, a universally conserved GTPase whose function is unknown | Back alignment and domain information |
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>gnl|CDD|133441 cd04938, TGS_Obg-like, TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF | Back alignment and domain information |
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>gnl|CDD|133435 cd01616, TGS, The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin | Back alignment and domain information |
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>gnl|CDD|133299 cd01899, Ygr210, Ygr210 subfamily | Back alignment and domain information |
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>gnl|CDD|183415 PRK12297, obgE, GTPase CgtA; Reviewed | Back alignment and domain information |
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>gnl|CDD|162989 TIGR02729, Obg_CgtA, Obg family GTPase CgtA | Back alignment and domain information |
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>gnl|CDD|133298 cd01898, Obg, Obg subfamily | Back alignment and domain information |
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>gnl|CDD|30882 COG0536, Obg, Predicted GTPase [General function prediction only] | Back alignment and domain information |
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>gnl|CDD|183417 PRK12299, obgE, GTPase CgtA; Reviewed | Back alignment and domain information |
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>gnl|CDD|183414 PRK12296, obgE, GTPase CgtA; Reviewed | Back alignment and domain information |
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>gnl|CDD|145217 pfam01926, MMR_HSR1, GTPase of unknown function | Back alignment and domain information |
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>gnl|CDD|133296 cd01896, DRG, The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins | Back alignment and domain information |
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>gnl|CDD|183416 PRK12298, obgE, GTPase CgtA; Reviewed | Back alignment and domain information |
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>gnl|CDD|36700 KOG1487, KOG1487, KOG1487, GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
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>gnl|CDD|32443 COG2262, HflX, GTPases [General function prediction only] | Back alignment and domain information |
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>gnl|CDD|36702 KOG1489, KOG1489, KOG1489, Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
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>gnl|CDD|133256 cd00880, Era_like, Era (E | Back alignment and domain information |
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>gnl|CDD|36699 KOG1486, KOG1486, KOG1486, GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
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>gnl|CDD|31354 COG1160, COG1160, Predicted GTPases [General function prediction only] | Back alignment and domain information |
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>gnl|CDD|30719 COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
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>gnl|CDD|161778 TIGR00231, small_GTP, small GTP-binding protein domain | Back alignment and domain information |
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>gnl|CDD|31353 COG1159, Era, GTPase [General function prediction only] | Back alignment and domain information |
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>gnl|CDD|133279 cd01878, HflX, HflX subfamily | Back alignment and domain information |
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>gnl|CDD|163343 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA | Back alignment and domain information |
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>gnl|CDD|133280 cd01879, FeoB, Ferrous iron transport protein B (FeoB) subfamily | Back alignment and domain information |
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>gnl|CDD|133294 cd01894, EngA1, EngA1 subfamily | Back alignment and domain information |
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>gnl|CDD|57927 cd01856, YlqF, YlqF | Back alignment and domain information |
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>gnl|CDD|178858 PRK00093, PRK00093, GTP-binding protein Der; Reviewed | Back alignment and domain information |
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>gnl|CDD|178854 PRK00089, era, GTPase Era; Reviewed | Back alignment and domain information |
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>gnl|CDD|145523 pfam02421, FeoB_N, Ferrous iron transport protein B | Back alignment and domain information |
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>gnl|CDD|133297 cd01897, NOG, NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
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>gnl|CDD|133363 cd04163, Era, Era subfamily | Back alignment and domain information |
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>gnl|CDD|163345 TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
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>gnl|CDD|179996 PRK05291, trmE, tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
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>gnl|CDD|181957 PRK09563, rbgA, GTPase YlqF; Reviewed | Back alignment and domain information |
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>gnl|CDD|133364 cd04164, trmE, TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
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>gnl|CDD|31355 COG1161, COG1161, Predicted GTPases [General function prediction only] | Back alignment and domain information |
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>gnl|CDD|163162 TIGR03156, GTP_HflX, GTP-binding protein HflX | Back alignment and domain information |
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>gnl|CDD|161885 TIGR00450, mnmE_trmE_thdF, tRNA modification GTPase TrmE | Back alignment and domain information |
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>gnl|CDD|161878 TIGR00437, feoB, ferrous iron transporter FeoB | Back alignment and domain information |
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>gnl|CDD|30833 COG0486, ThdF, Predicted GTPase [General function prediction only] | Back alignment and domain information |
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>gnl|CDD|163343 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA | Back alignment and domain information |
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>gnl|CDD|31281 COG1084, COG1084, Predicted GTPase [General function prediction only] | Back alignment and domain information |
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>gnl|CDD|57924 cd01849, YlqF_related_GTPase, YlqF-related GTPases | Back alignment and domain information |
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>gnl|CDD|178858 PRK00093, PRK00093, GTP-binding protein Der; Reviewed | Back alignment and domain information |
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>gnl|CDD|181948 PRK09554, feoB, ferrous iron transport protein B; Reviewed | Back alignment and domain information |
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>gnl|CDD|57931 cd04178, Nucleostemin_like, Nucleostemin-like | Back alignment and domain information |
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Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 367 | translation-associated GTPase [Candidatus Liberibacter | ||
PRK09601 | 364 | translation-associated GTPase; Reviewed | 100.0 | |
PTZ00258 | 392 | GTP-binding protein; Provisional | 100.0 | |
TIGR00092 | 390 | TIGR00092 GTP-binding protein YchF; InterPro: IPR004396 | 100.0 | |
COG0012 | 372 | Predicted GTPase, probable translation factor [Translat | 100.0 | |
KOG1491 | 391 | consensus | 100.0 | |
PRK09602 | 396 | translation-associated GTPase; Reviewed | 100.0 | |
COG1163 | 365 | DRG Predicted GTPase [General function prediction only] | 100.0 | |
KOG1486 | 364 | consensus | 99.98 | |
KOG1487 | 358 | consensus | 99.94 | |
cd01900 | 274 | YchF YchF subfamily. YchF is a member of the Obg family | 100.0 | |
cd01899 | 318 | Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like | 100.0 | |
cd01896 | 233 | DRG The developmentally regulated GTP-binding protein ( | 100.0 | |
PRK12297 | 429 | obgE GTPase ObgE; Reviewed | 100.0 | |
PRK12298 | 380 | obgE GTPase ObgE; Reviewed | 100.0 | |
PRK12299 | 334 | obgE GTPase ObgE; Reviewed | 100.0 | |
cd01881 | 176 | Obg_like The Obg-like subfamily consists of five well-d | 99.98 | |
cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding protein s | 99.96 | |
cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein present in | 99.87 | |
PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provisiona | 95.56 | |
PRK12296 | 495 | obgE GTPase ObgE; Reviewed | 100.0 | |
KOG1489 | 366 | consensus | 99.96 | |
cd00882 | 157 | Ras_like_GTPase Ras-like GTPase superfamily. The Ras-li | 98.71 | |
cd00154 | 159 | Rab Rab family. Rab GTPases form the largest family wit | 98.59 | |
pfam00071 | 162 | Ras Ras family. Includes sub-families Ras, Rab, Rac, Ra | 98.57 | |
cd01892 | 169 | Miro2 Miro2 subfamily. Miro (mitochondrial Rho) protein | 98.36 | |
smart00175 | 164 | RAB Rab subfamily of small GTPases. Rab GTPases are imp | 98.35 | |
cd01863 | 161 | Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in | 98.35 | |
cd04139 | 164 | RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfa | 98.32 | |
cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in many p | 98.29 | |
cd04146 | 165 | RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras- | 98.23 | |
cd04123 | 162 | Rab21 Rab21 subfamily. The localization and function of | 98.23 | |
cd00876 | 160 | Ras Ras family. The Ras family of the Ras superfamily i | 98.21 | |
cd04112 | 191 | Rab26 Rab26 subfamily. First identified in rat pancreat | 98.21 | |
cd04114 | 169 | Rab30 Rab30 subfamily. Rab30 appears to be associated w | 98.21 | |
cd04138 | 162 | H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ra | 98.2 | |
cd04125 | 188 | RabA_like RabA-like subfamily. RabA was first identifie | 98.17 | |
cd04101 | 164 | RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel pro | 98.17 | |
cd04142 | 198 | RRP22 RRP22 subfamily. RRP22 (Ras-related protein on ch | 98.17 | |
cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. Rab | 98.16 | |
cd04143 | 247 | Rhes_like Rhes_like subfamily. This subfamily includes | 98.15 | |
cd01868 | 165 | Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are cl | 98.15 | |
cd04144 | 190 | Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusiv | 98.14 | |
cd04113 | 161 | Rab4 Rab4 subfamily. Rab4 has been implicated in numero | 98.14 | |
KOG0073 | 185 | consensus | 98.12 | |
cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every e | 98.12 | |
cd04127 | 180 | Rab27A Rab27a subfamily. The Rab27a subfamily consists | 98.12 | |
cd01867 | 167 | Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 ar | 98.11 | |
cd04140 | 165 | ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) | 98.11 | |
cd04117 | 161 | Rab15 Rab15 subfamily. Rab15 colocalizes with the trans | 98.11 | |
smart00173 | 164 | RAS Ras subfamily of RAS small GTPases. Similar in fold | 98.1 | |
cd01866 | 168 | Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi mem | 98.09 | |
cd04110 | 199 | Rab35 Rab35 subfamily. Rab35 is one of several Rab prot | 98.07 | |
cd04148 | 221 | RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) su | 98.07 | |
cd04122 | 166 | Rab14 Rab14 subfamily. Rab14 GTPases are localized to b | 98.07 | |
cd04137 | 180 | RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rh | 98.07 | |
cd04115 | 170 | Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiqui | 98.04 | |
cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that re | 98.03 | |
cd04107 | 201 | Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are | 98.02 | |
cd04141 | 172 | Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protei | 98.01 | |
cd04145 | 164 | M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily | 97.99 | |
cd04136 | 163 | Rap_like Rap-like subfamily. The Rap subfamily consists | 97.99 | |
cd04176 | 163 | Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Ra | 97.98 | |
cd04118 | 193 | Rab24 Rab24 subfamily. Rab24 is distinct from other Rab | 97.98 | |
cd01860 | 163 | Rab5_related Rab5-related subfamily. This subfamily inc | 97.98 | |
cd01861 | 161 | Rab6 Rab6 subfamily. Rab6 is involved in microtubule-de | 97.98 | |
cd01864 | 165 | Rab19 Rab19 subfamily. Rab19 proteins are associated wi | 97.98 | |
cd04121 | 189 | Rab40 Rab40 subfamily. This subfamily contains Rab40a, | 97.97 | |
cd01865 | 165 | Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, | 97.97 | |
cd04120 | 202 | Rab12 Rab12 subfamily. Rab12 was first identified in ca | 97.95 | |
cd04116 | 170 | Rab9 Rab9 subfamily. Rab9 is found in late endosomes, t | 97.94 | |
cd04111 | 211 | Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is ma | 97.94 | |
cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member of th | 97.93 | |
cd04175 | 164 | Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Ra | 97.93 | |
cd04109 | 215 | Rab28 Rab28 subfamily. First identified in maize, Rab28 | 97.92 | |
cd04108 | 170 | Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primari | 97.92 | |
PTZ00132 | 209 | GTP-binding nuclear protein; Provisional | 97.88 | |
cd04103 | 158 | Centaurin_gamma Centaurin gamma. The centaurins (alpha, | 97.83 | |
cd00877 | 166 | Ran Ran (Ras-related nuclear proteins) /TC4 subfamily o | 97.79 | |
smart00176 | 200 | RAN Ran (Ras-related nuclear proteins) /TC4 subfamily o | 96.86 | |
KOG0078 | 207 | consensus | 96.62 | |
PRK10419 | 266 | nikE nickel transporter ATP-binding protein; Provisiona | 95.55 | |
KOG0394 | 210 | consensus | 94.17 | |
PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Provisi | 93.26 | |
COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transport s | 91.81 | |
PRK09473 | 330 | oppD oligopeptide transporter ATP-binding component; Pr | 90.99 | |
TIGR02729 | 296 | Obg_CgtA GTP-binding protein Obg/CgtA; InterPro: IPR014 | 100.0 | |
COG0536 | 369 | Obg Predicted GTPase [General function prediction only] | 100.0 | |
cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain with a | 99.89 | |
cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein foun | 99.86 | |
TIGR03156 | 351 | GTP_HflX GTP-binding protein HflX. This protein family | 99.84 | |
cd01895 | 174 | EngA2 EngA2 subfamily. This CD represents the second GT | 99.84 | |
cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) is a | 99.83 | |
cd00880 | 163 | Era_like Era (E. coli Ras-like protein)-like. This fami | 99.83 | |
cd01894 | 157 | EngA1 EngA1 subfamily. This CD represents the first GTP | 99.8 | |
PRK00089 | 296 | era GTP-binding protein Era; Reviewed | 99.79 | |
COG1160 | 444 | Predicted GTPases [General function prediction only] | 99.75 | |
PRK00093 | 438 | engA GTP-binding protein EngA; Reviewed | 99.73 | |
TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK | 99.71 | |
PRK04213 | 195 | GTP-binding protein; Provisional | 99.7 | |
PRK03003 | 474 | engA GTP-binding protein EngA; Reviewed | 99.7 | |
PRK09554 | 772 | feoB ferrous iron transport protein B; Reviewed | 99.7 | |
TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK | 99.68 | |
PRK00093 | 438 | engA GTP-binding protein EngA; Reviewed | 99.65 | |
PRK03003 | 474 | engA GTP-binding protein EngA; Reviewed | 99.63 | |
PRK09518 | 714 | bifunctional cytidylate kinase/GTP-binding protein; Rev | 99.61 | |
PRK11058 | 426 | putative GTPase HflX; Provisional | 99.61 | |
TIGR00437 | 733 | feoB ferrous iron transport protein B; InterPro: IPR003 | 99.6 | |
PRK09518 | 714 | bifunctional cytidylate kinase/GTP-binding protein; Rev | 99.59 | |
COG1159 | 298 | Era GTPase [General function prediction only] | 99.57 | |
COG2262 | 411 | HflX GTPases [General function prediction only] | 99.44 | |
cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor neede | 99.4 | |
COG0370 | 653 | FeoB Fe2+ transport system protein B [Inorganic ion tra | 99.39 | |
pfam01926 | 106 | MMR_HSR1 GTPase of unknown function. | 99.39 | |
PRK05291 | 445 | trmE tRNA modification GTPase TrmE; Reviewed | 99.38 | |
pfam10662 | 143 | PduV-EutP Ethanolamine utilisation - propanediol utilis | 99.35 | |
cd01887 | 168 | IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic i | 99.29 | |
pfam00009 | 185 | GTP_EFTU Elongation factor Tu GTP binding domain. This | 99.23 | |
TIGR00450 | 473 | thdF tRNA modification GTPase TrmE; InterPro: IPR004520 | 99.23 | |
COG0486 | 454 | ThdF Predicted GTPase [General function prediction only | 99.22 | |
KOG1490 | 620 | consensus | 99.07 | |
COG1160 | 444 | Predicted GTPases [General function prediction only] | 99.04 | |
cd04105 | 203 | SR_beta Signal recognition particle receptor, beta subu | 99.04 | |
cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family | 99.01 | |
pfam00025 | 174 | Arf ADP-ribosylation factor family. Pfam combines a num | 99.0 | |
cd04154 | 173 | Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are memb | 98.99 | |
cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1) | 98.97 | |
pfam09439 | 181 | SRPRB Signal recognition particle receptor beta subunit | 98.97 | |
KOG1423 | 379 | consensus | 98.95 | |
cd00881 | 189 | GTP_translation_factor GTP translation factor family. T | 98.94 | |
cd00878 | 158 | Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) sm | 98.9 | |
cd04156 | 160 | ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppres | 98.82 | |
cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was identif | 98.81 | |
cd04157 | 162 | Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamil | 98.81 | |
PTZ00133 | 182 | ADP-ribosylation factor; Provisional | 98.78 | |
KOG0410 | 410 | consensus | 98.76 | |
smart00177 | 175 | ARF ARF-like small GTPases; ARF, ADP-ribosylation facto | 98.75 | |
smart00178 | 184 | SAR Sar1p-like members of the Ras-family of small GTPas | 98.73 | |
cd04161 | 167 | Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2- | 98.73 | |
cd04158 | 169 | ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor doma | 98.71 | |
cd04153 | 174 | Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Ar | 98.7 | |
cd01890 | 179 | LepA LepA subfamily. LepA belongs to the GTPase family | 98.7 | |
cd04150 | 159 | Arf1_5_like Arf1-Arf5-like subfamily. This subfamily co | 98.69 | |
cd04149 | 168 | Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) p | 98.65 | |
cd04152 | 183 | Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is hig | 98.59 | |
cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the | 98.58 | |
cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential component of | 98.43 | |
pfam00350 | 168 | Dynamin_N Dynamin family. | 98.36 | |
cd04162 | 164 | Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf- | 98.07 | |
cd01891 | 194 | TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA | 97.95 | |
KOG0090 | 238 | consensus | 97.88 | |
cd04135 | 174 | Tc10 TC10 subfamily. TC10 is a Rho family protein that | 97.81 | |
cd04168 | 237 | TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W) | 97.79 | |
cd04128 | 182 | Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first i | 97.78 | |
cd04177 | 168 | RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap s | 97.77 | |
pfam08477 | 118 | Miro Miro-like protein. Mitochondrial Rho proteins (Mir | 97.6 | |
TIGR00436 | 278 | era GTP-binding protein Era; InterPro: IPR005662 Era is | 97.42 | |
cd04170 | 268 | EF-G_bact Elongation factor G (EF-G) subfamily. Translo | 97.38 | |
KOG0075 | 186 | consensus | 97.09 | |
CHL00189 | 770 | infB translation initiation factor 2; Provisional | 96.99 | |
cd04102 | 202 | RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel pro | 96.97 | |
PRK12312 | 610 | infB translation initiation factor IF-2; Provisional | 96.91 | |
PRK05306 | 839 | infB translation initiation factor IF-2; Validated | 96.85 | |
cd04126 | 220 | Rab20 Rab20 subfamily. Rab20 is one of several Rab prot | 96.81 | |
cd04132 | 187 | Rho4_like Rho4-like subfamily. Rho4 is a GTPase that co | 96.77 | |
KOG0074 | 185 | consensus | 96.72 | |
KOG0070 | 181 | consensus | 96.65 | |
TIGR02528 | 144 | EutP ethanolamine utilization protein, EutP; InterPro: | 96.45 | |
cd04167 | 213 | Snu114p Snu114p subfamily. Snu114p is one of several pr | 96.37 | |
PRK05433 | 601 | GTP-binding protein LepA; Provisional | 96.29 | |
PRK04000 | 410 | translation initiation factor IF-2 subunit gamma; Valid | 96.29 | |
cd01886 | 270 | EF-G Elongation factor G (EF-G) subfamily. Translocatio | 96.15 | |
cd01884 | 195 | EF_Tu EF-Tu subfamily. This subfamily includes ortholog | 96.14 | |
PRK12735 | 396 | elongation factor Tu; Reviewed | 96.0 | |
cd01885 | 222 | EF2 EF2 (for archaea and eukarya). Translocation requir | 95.89 | |
cd04169 | 267 | RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) | 95.87 | |
KOG0084 | 205 | consensus | 95.79 | |
PRK00741 | 526 | prfC peptide chain release factor 3; Provisional | 95.72 | |
PRK00049 | 397 | elongation factor Tu; Reviewed | 95.61 | |
KOG0076 | 197 | consensus | 95.54 | |
cd01883 | 219 | EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha su | 95.43 | |
PRK13351 | 687 | elongation factor G; Reviewed | 95.37 | |
cd01882 | 225 | BMS1 Bms1. Bms1 is an essential, evolutionarily conserv | 95.15 | |
cd04166 | 208 | CysN_ATPS CysN_ATPS subfamily. CysN, together with prot | 95.08 | |
PTZ00141 | 443 | elongation factor 1 alpha; Provisional | 94.66 | |
KOG0468 | 971 | consensus | 94.4 | |
KOG0462 | 650 | consensus | 94.24 | |
CHL00071 | 409 | tufA elongation factor Tu | 94.22 | |
PRK12317 | 426 | elongation factor 1-alpha; Reviewed | 94.2 | |
PRK12736 | 394 | elongation factor Tu; Reviewed | 93.81 | |
PRK00007 | 693 | elongation factor G; Reviewed | 93.61 | |
PTZ00327 | 460 | eukaryotic translation initiation factor 2 gamma subuni | 93.59 | |
PTZ00336 | 449 | elongation factor 1-alpha; Provisional | 93.57 | |
PRK12739 | 693 | elongation factor G; Reviewed | 93.2 | |
PRK07560 | 730 | elongation factor EF-2; Reviewed | 93.13 | |
PRK10218 | 607 | GTP-binding protein; Provisional | 92.61 | |
KOG0091 | 213 | consensus | 91.47 | |
KOG1707 | 625 | consensus | 90.85 | |
pfam06071 | 84 | YchF-GTPase_C Protein of unknown function (DUF933). Thi | 100.0 | |
cd04867 | 83 | TGS_YchF_C TGS_YchF_C: This subfamily represents TGS do | 100.0 | |
cd04938 | 76 | TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of | 99.72 | |
cd01669 | 76 | TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of | 99.71 | |
cd01666 | 75 | TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP | 99.25 | |
cd01616 | 60 | TGS The TGS domain, named after the ThrRS, GTPase, and | 98.89 | |
cd01668 | 60 | TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, a | 98.67 | |
pfam02824 | 60 | TGS TGS domain. The TGS domain is named after ThrRS, GT | 98.6 | |
TIGR00691 | 741 | spoT_relA RelA/SpoT family protein; InterPro: IPR004811 | 98.56 | |
PRK11092 | 702 | bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bi | 98.56 | |
PRK10872 | 743 | relA GDP/GTP pyrophosphokinase; Provisional | 98.5 | |
COG0317 | 701 | SpoT Guanosine polyphosphate pyrophosphohydrolases/synt | 98.42 | |
pfam02421 | 188 | FeoB_N Ferrous iron transport protein B. Escherichia co | 99.83 | |
cd01879 | 158 | FeoB Ferrous iron transport protein B (FeoB) subfamily. | 99.83 | |
cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamily of | 99.69 | |
PRK00454 | 196 | engB GTPase EngB; Reviewed | 99.6 | |
KOG1191 | 531 | consensus | 98.96 | |
KOG1424 | 562 | consensus | 98.43 | |
KOG2484 | 435 | consensus | 98.42 | |
cd04104 | 197 | p47_IIGP_like p47 (47-kDa) family. The p47 GTPase famil | 98.04 | |
cd01853 | 249 | Toc34_like Toc34-like (Translocon at the Outer-envelope | 98.0 | |
cd04147 | 198 | Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventra | 97.99 | |
cd00157 | 171 | Rho Rho (Ras homology) family. Members of the Rho famil | 97.93 | |
COG1100 | 219 | GTPase SAR1 and related small G proteins [General funct | 97.78 | |
TIGR00475 | 627 | selB selenocysteine-specific translation elongation fac | 97.76 | |
KOG2423 | 572 | consensus | 97.74 | |
cd01870 | 175 | RhoA_like RhoA-like subfamily. The RhoA subfamily consi | 97.7 | |
pfam05049 | 375 | IIGP Interferon-inducible GTPase (IIGP). Interferon-ind | 97.67 | |
cd04133 | 176 | Rop_like Rop subfamily. The Rop (Rho-related protein fr | 97.67 | |
cd01873 | 195 | RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamil | 97.55 | |
cd01889 | 192 | SelB_euk SelB subfamily. SelB is an elongation factor n | 97.5 | |
TIGR00231 | 186 | small_GTP small GTP-binding protein domain; InterPro: I | 97.47 | |
smart00174 | 174 | RHO Rho (Ras homology) subfamily of Ras-like small GTPa | 97.37 | |
COG3596 | 296 | Predicted GTPase [General function prediction only] | 97.3 | |
cd01893 | 166 | Miro1 Miro1 subfamily. Miro (mitochondrial Rho) protein | 97.16 | |
cd01871 | 174 | Rac1_like Rac1-like subfamily. The Rac1-like subfamily | 97.12 | |
KOG2485 | 335 | consensus | 97.02 | |
cd01874 | 175 | Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase tha | 96.94 | |
cd04130 | 173 | Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 | 96.85 | |
cd01875 | 191 | RhoG RhoG subfamily. RhoG is a GTPase with high sequenc | 96.66 | |
pfam04670 | 230 | Gtr1_RagA Gtr1/RagA G protein conserved region. GTR1 wa | 96.49 | |
pfam04548 | 200 | AIG1 AIG1 family. Arabidopsis protein AIG1 appears to b | 96.44 | |
cd04129 | 187 | Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays | 96.23 | |
cd04131 | 178 | Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6 | 96.19 | |
cd04173 | 222 | Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of | 96.15 | |
cd04174 | 232 | Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of | 96.14 | |
TIGR00993 | 772 | 3a0901s04IAP86 chloroplast protein import component Toc | 96.1 | |
cd04134 | 189 | Rho3 Rho3 subfamily. Rho3 is a member of the Rho family | 96.1 | |
KOG1954 | 532 | consensus | 96.07 | |
cd04172 | 182 | Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 | 95.88 | |
KOG0395 | 196 | consensus | 95.3 | |
cd01852 | 196 | AIG1 AIG1 (avrRpt2-induced gene 1). This represents Ara | 95.28 | |
KOG0448 | 749 | consensus | 95.17 | |
PRK10512 | 615 | selenocysteinyl-tRNA-specific translation factor; Provi | 94.05 | |
PRK04004 | 592 | translation initiation factor IF-2; Validated | 93.63 | |
TIGR00991 | 328 | 3a0901s02IAP34 GTP-binding protein; InterPro: IPR005688 | 92.71 | |
PRK07261 | 171 | topology modulation protein; Provisional | 92.18 | |
COG1341 | 398 | Predicted GTPase or GTP-binding protein [General functi | 91.92 | |
PRK08118 | 167 | topology modulation protein; Reviewed | 91.82 | |
COG0563 | 178 | Adk Adenylate kinase and related kinases [Nucleotide tr | 91.44 | |
KOG0092 | 200 | consensus | 91.42 | |
TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protein Ysx | 99.49 | |
COG1084 | 346 | Predicted GTPase [General function prediction only] | 99.46 | |
cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gen | 98.93 | |
cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These protein | 98.87 | |
TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protein Ylq | 98.86 | |
PRK09563 | 282 | rbgA ribosomal biogenesis GTPase; Reviewed | 98.84 | |
COG1161 | 322 | Predicted GTPases [General function prediction only] | 98.82 | |
cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the hu | 98.81 | |
TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This famil | 98.26 | |
COG0218 | 200 | Predicted GTPase [General function prediction only] | 98.06 | |
pfam00735 | 280 | Septin Septin. Members of this family include CDC3, CDC | 95.53 | |
cd01850 | 276 | CDC_Septin CDC/Septin. Septins are a conserved family o | 94.86 | |
COG1618 | 179 | Predicted nucleotide kinase [Nucleotide transport and m | 94.78 | |
TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-binding | 94.62 | |
COG5019 | 373 | CDC3 Septin family protein [Cell division and chromosom | 93.65 | |
COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transport sys | 92.6 | |
TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IISP) Fa | 92.21 | |
cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all sequ | 98.9 | |
cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTPase t | 98.83 | |
PRK13796 | 367 | GTP-binding protein YqeH; Provisional | 98.06 | |
cd01888 | 203 | eIF2_gamma eIF2-gamma (gamma subunit of initiation fact | 97.39 | |
TIGR00650 | 123 | MG442 GTP-binding conserved hypothetical protein; Inter | 97.33 | |
PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-binding | 96.4 | |
PRK13695 | 174 | putative NTPase; Provisional | 96.3 | |
TIGR00750 | 333 | lao LAO/AO transport system ATPase; InterPro: IPR005129 | 96.27 | |
COG0488 | 530 | Uup ATPase components of ABC transporters with duplicat | 96.14 | |
COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transport s | 96.13 | |
COG4172 | 534 | ABC-type uncharacterized transport system, duplicated A | 95.78 | |
smart00053 | 240 | DYNc Dynamin, GTPase. Large GTPases that mediate vesicl | 95.58 | |
cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cyt | 95.42 | |
cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the maltose | 95.41 | |
cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin exporte | 95.38 | |
PRK11819 | 556 | putative ABC transporter ATP-binding protein; Reviewed | 95.36 | |
cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-bi | 95.21 | |
cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a | 95.2 | |
PRK10636 | 638 | putative ABC transporter ATP-binding protein; Provision | 95.18 | |
PRK13768 | 253 | GTPase; Provisional | 95.11 | |
cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tranpor | 95.1 | |
COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate transport | 95.02 | |
pfam03308 | 267 | ArgK ArgK protein. The ArgK protein acts as an ATPase e | 95.01 | |
cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute Trans | 94.98 | |
PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Provision | 94.97 | |
cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is a cen | 94.97 | |
cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor | 94.88 | |
cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type tr | 94.85 | |
COG0237 | 201 | CoaE Dephospho-CoA kinase [Coenzyme metabolism] | 94.84 | |
TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein; Int | 94.83 | |
cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-lik | 94.82 | |
cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibr | 94.81 | |
cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily represent | 94.8 | |
cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, closely | 94.73 | |
cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter subfamil | 94.73 | |
cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibr | 94.72 | |
COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, contai | 94.7 | |
cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This | 94.68 | |
PRK10790 | 593 | putative multidrug transporter membrane\ATP-binding com | 94.63 | |
cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter that i | 94.57 | |
PRK09435 | 325 | arginine/ornithine transport system ATPase; Provisional | 94.54 | |
cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-binding p | 94.51 | |
PRK11147 | 632 | ABC transporter ATPase component; Reviewed | 94.48 | |
PRK10789 | 569 | putative multidrug transporter membrane\ATP-binding com | 94.47 | |
PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provisiona | 94.45 | |
cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This | 94.44 | |
PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; Prov | 94.43 | |
cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor S | 94.4 | |
cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Antigen P | 94.37 | |
cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involved in | 94.27 | |
PRK11176 | 581 | lipid transporter ATP-binding/permease protein; Provisi | 94.23 | |
PRK11701 | 258 | phnK phosphonates transport ATP-binding protein; Provis | 94.22 | |
PRK13641 | 286 | cbiO cobalt transporter ATP-binding subunit; Provisiona | 94.19 | |
PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 94.16 | |
cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of the L | 94.14 | |
KOG0054 | 1381 | consensus | 94.13 | |
PRK11147 | 632 | ABC transporter ATPase component; Reviewed | 94.1 | |
cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transporter c | 94.1 | |
PRK10895 | 241 | putative ABC transporter ATP-binding protein YhbG; Prov | 94.1 | |
cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNa | 94.08 | |
cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporte | 94.05 | |
cd03246 | 173 | ABCC_Protease_Secretion This family represents the ABC | 94.03 | |
cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase component o | 94.01 | |
cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-type tra | 94.0 | |
cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the transpo | 93.96 | |
cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ07 | 93.96 | |
TIGR02857 | 570 | CydD ABC transporter, CydDC cysteine exporter (CydDC-E) | 93.94 | |
cd03234 | 226 | ABCG_White The White subfamily represents ABC transport | 93.92 | |
KOG0057 | 591 | consensus | 93.91 | |
PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Reviewed | 93.86 | |
PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; Prov | 93.83 | |
cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter | 93.81 | |
PRK00081 | 199 | coaE dephospho-CoA kinase; Reviewed | 93.8 | |
PRK13544 | 208 | consensus | 93.78 | |
cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding proteins | 93.75 | |
PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisional | 93.75 | |
cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor ( | 93.74 | |
pfam04317 | 443 | DUF463 YcjX-like family, DUF463. Some members of this f | 93.73 | |
cd03299 | 235 | ABC_ModC_like Archeal protein closely related to ModC. | 93.71 | |
PRK10771 | 233 | thiQ thiamine transporter ATP-binding subunit; Provisio | 93.7 | |
TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding prote | 93.68 | |
PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; Prov | 93.68 | |
PRK08356 | 195 | hypothetical protein; Provisional | 93.62 | |
CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 93.61 | |
PRK13548 | 257 | hmuV hemin importer ATP-binding subunit; Provisional | 93.59 | |
PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding subunit | 93.57 | |
cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette | 93.56 | |
COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase compon | 93.56 | |
PRK10636 | 638 | putative ABC transporter ATP-binding protein; Provision | 93.54 | |
cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC component | 93.53 | |
cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNa | 93.5 | |
PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; Provi | 93.48 | |
cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding component | 93.47 | |
cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is of f | 93.43 | |
KOG1249 | 572 | consensus | 93.41 | |
PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter subunit | 93.4 | |
cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC component o | 93.39 | |
PRK13542 | 224 | consensus | 93.36 | |
PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provisiona | 93.33 | |
PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-binding | 93.31 | |
cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) tr | 93.3 | |
cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonate tra | 93.29 | |
TIGR02788 | 328 | VirB11 P-type DNA transfer ATPase VirB11; InterPro: IPR | 93.25 | |
cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the YhbG fam | 93.24 | |
TIGR02546 | 430 | III_secr_ATP type III secretion apparatus H+-transporti | 93.24 | |
PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provisiona | 93.24 | |
cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-type tr | 93.23 | |
cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pigment | 93.23 | |
TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding prote | 93.22 | |
TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC transpor | 93.21 | |
COG1136 | 226 | SalX ABC-type antimicrobial peptide transport system, A | 93.2 | |
PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provisiona | 93.2 | |
TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding protein; | 93.19 | |
PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 93.16 | |
PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provisiona | 93.16 | |
PRK13547 | 273 | hmuV hemin importer ATP-binding subunit; Provisional | 93.16 | |
PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; Provi | 93.14 | |
PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding protein; P | 93.13 | |
cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in cyto | 93.12 | |
cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in drug | 93.11 | |
COG1703 | 323 | ArgK Putative periplasmic protein kinase ArgK and relat | 93.1 | |
PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; Prov | 93.1 | |
PTZ00243 | 1560 | ABC transporter; Provisional | 93.09 | |
cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain I of | 93.08 | |
PRK13632 | 273 | cbiO cobalt transporter ATP-binding subunit; Provisiona | 93.08 | |
cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-like (P | 93.07 | |
cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is the | 93.04 | |
cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component of a | 93.01 | |
PRK13539 | 206 | cytochrome c biogenesis protein CcmA; Provisional | 93.01 | |
PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 93.01 | |
COG2019 | 189 | AdkA Archaeal adenylate kinase [Nucleotide transport an | 93.01 | |
pfam03266 | 168 | DUF265 Protein of unknown function, DUF265. | 92.99 | |
PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subunit; Pr | 92.97 | |
PRK13545 | 549 | tagH teichoic acids export protein ATP-binding subunit; | 92.97 | |
PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; Prov | 92.97 | |
PRK09984 | 262 | phosphonate/organophosphate ester transporter subunit; | 92.9 | |
PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Reviewed | 92.88 | |
cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transport s | 92.86 | |
PRK10938 | 490 | putative molybdenum transport ATP-binding protein ModF; | 92.86 | |
cd03116 | 159 | MobB Molybdenum is an essential trace element in the fo | 92.85 | |
PTZ00265 | 1467 | multidrug resistance protein (mdr1); Provisional | 92.85 | |
PRK11264 | 248 | putative amino-acid ABC transporter ATP-binding protein | 92.83 | |
PRK10908 | 222 | cell division protein FtsE; Provisional | 92.82 | |
cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter nucle | 92.82 | |
PRK13651 | 304 | cobalt transporter ATP-binding subunit; Provisional | 92.81 | |
PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provisiona | 92.81 | |
PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provisiona | 92.81 | |
PRK03695 | 245 | vitamin B12-transporter ATPase; Provisional | 92.8 | |
cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the ATPa | 92.79 | |
PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein; Rev | 92.78 | |
cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, invol | 92.74 | |
PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Provisio | 92.71 | |
) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) . The MobB domain is similar to that of the urease accessory protein UreG and the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocentres of their respective target enzymes. It is involved in the final step of molybdenum-cofactor biosynthesis. While its precise function has not been identified it is thought to be involved in the transfer of a guanine dinucleotide moiety to molybdopterin, as it shows GTP-binding and weak GTPase activity . The MobB protein (P32125 from SWISSPROT) from Escherichia coli, which is comprised of this domain, is a homodimer . Each molecule is composed of two distinct regions - an outer region comprised of 6 beta-strands and three alpha helices, and an inner region comprised of a two-strand beta hairpin followed by an alpha helix. These regions require interaction with the second monomer to allow proper folding to occur. The two monomers are intertwined and form an extensive 16-stranded beta-sheet. While the active site could not be positively identified, the presence of highly conserved residues suggests the substrate binding site occurs in the central solvent channel.; GO: 0005525 GTP binding, 0006777 Mo-molybdopterin cofactor biosynthetic process." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=TIGR00176">TIGR00176 | 165 | mobB molybdopterin-guanine dinucleotide biosynthesis pr | 92.71 | |
COG4988 | 559 | CydD ABC-type transport system involved in cytochrome b | 92.64 | |
PRK13409 | 590 | putative ATPase RIL; Provisional | 92.54 | |
COG4987 | 573 | CydC ABC-type transport system involved in cytochrome b | 92.52 | |
cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (PDR) f | 92.52 | |
cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II of t | 92.51 | |
TIGR02315 | 253 | ABC_phnC phosphonate ABC transporter, ATP-binding prote | 92.38 | |
cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-b | 92.38 | |
PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit; Pro | 92.3 | |
PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisional | 92.2 | |
cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Binding | 92.2 | |
PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provisiona | 92.19 | |
PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-binding pr | 92.19 | |
cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known as Yus | 92.17 | |
COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase component | 92.13 | |
PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 92.11 | |