254780242

254780242

50S ribosomal protein L15

GeneID in NCBI database:8209223Locus tag:CLIBASIA_00635
Protein GI in NCBI database:254780242Protein Accession:YP_003064655.1
Gene range:-(133884, 134339)Protein Length:151aa
Gene description:50S ribosomal protein L15
COG prediction:[J] Ribosomal protein L15
KEGG prediction:rplO; 50S ribosomal protein L15; K02876 large subunit ribosomal protein L15
SEED prediction:LSU ribosomal protein L15p (L27Ae)
Pathway involved in KEGG:Ribosome [PATH:las03010]
Subsystem involved in SEED:Ribosome LSU bacterial
sequencesequence profile

Prediction of Local Sequence Properties

SourceSummaryResult
scaler
NCBI Databasesequence
PSIPREDsecondary structure
SSPROsecondary structure
DISEMBLcoil and loop
DISEMBLflexible loop
SEGlow complexity
DISOPREDdisordered
DISEMBLmissing residues
DISPROdisordered
TMHMMnone TM-Helix
TOPPRED1 TM-Helix
HMMTOPnone TM-Helix
MEMSATnone TM-Helix
MEMSAT_SVMnone TM-Helix
PHOBIUS1 TM-Helix
SignalP_HMMno
SignalP_NNno
COILScoiled coil
70% MSAconservation map
90% MSAconservation map
  
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-
MKLNEISYDKGSCKVKKRVARGIGSGTGKTAGRGVKGQKSRSGVSVRGFEGGQMPLYRRLPKRGFVNIAGSDFVTISLGLLQAYIDKDRLDCSSEIDASVLVASGLVRRSQRGIRILSDGDLKAKVVLRVSGASASAVEKVEKLGGQVIVI
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEHHHHHHHHHcccccccccccHHHHHHccccccccccEEEEccccccccEEEEEEEccHHHHHHHHHcccEEEEc
cccHccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccHEEEEEEcHHHHHHHHHcccccccccccHHHHHHcccEEEccccEEEEEcccEEEEEEEEEcHHHHHHHHHHHHcccEEEEc
mklneisydkgscKVKKRVArgigsgtgktagrgvkgqksrsgvsvrgfeggqmplyrrlpkrgfvniagsdFVTISLGLLQAyidkdrldcsseiDASVLVASGLvrrsqrgirilsdgdlKAKVVLRVSGASASAVEKVEKlggqvivi
mklneisydkgsckvkkrvargigsgtgktagrgvkgqksrsgvsvrgfeggqmplyrrlpKRGFVNIAGSDFVTISLGLLQAYIDKDRLDCSSEIDASVLvasglvrrsqrgirilsdgdlkaKVVLRvsgasasavekveklggqvivi
MKLNEISYDKGSCKVKKRVARGIGSGTGKTAGRGVKGQKSRSGVSVRGFEGGQMPLYRRLPKRGFVNIAGSDFVTISLGLLQAYIDKDRLDCSSEIDASVLVASGLVRRSQRGIRILSDGDLKAKVVLRVSGASASAVEKVEKLGGQVIVI
MKLNEISY*************G*GSGTGKTAGRGVKGQ*S*SGVSVRGFEGGQMPLYRRLPKRGFVNIAGSDFVTISLGLLQAYIDKDRLDCSSEIDASVLVASGLVRRSQRGIRILSDGDLKAKVVLRVSGASASAVEKVEKLGGQVIVI
MKLNEISYDKGSCKVKKRVARGIGSGT*****************SVRGFEGGQMPLYRRLPKRGFVNIAGSDFVTISLGLLQAYIDKDRLDCSSEIDASVLVASGLVRRSQRGIRILSDGDLKAKVVLRVSGASASAVEKVEKLGGQVIVI
***********************************************GFEGGQMPLYRRLPKRGFVNIAGSDFVTISLGLLQAYIDKDRLDCSSEIDASVLVASGLVRRSQRGIRILSDGDLKAKVVLRVSGASASAVEKVEKLGGQVIVI
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MKLNEISYDKGSCKVKKRVARGIGSGTGKTAGRGVKGQKSRSGVSVRGFEGGQMPLYRRLPKRGFVNIAGSDFVTISLGLLQAYIDKDRLDCSSEIDASVLVASGLVRRSQRGIRILSDGDLKAKVVLRVSGASASAVEKVEKLGGQVIVI
MKLNEISYDKGSCKVKKRVARGIGSGTGKTAGRGVKGQKSRSGVSVRGFEGGQMPLYRRLPKRGFVNIAGSDFVTISLGLLQAYIDKDRLDCSSEIDASVLVASGLVRRSQRGIRILSDGDLKAKVVLRVSGASASAVEKVEKLGGQVIVI
MKLNEISYDKGSCKVKKRVARGIGSGTGKTAGRGVKGQKSRSGVSVRGFEGGQMPLYRRLPKRGFVNIAGSDFVTISLGLLQAYIDKDRLDCSSEIDASVLVASGLVRRSQRGIRILSDGDLKAKVVLRVSGASASAVEKVEKLGGQVIVI

Close Homologs Detected by BLAST or PSI-BLAST

Homolog within the Genome Detected by BLAST

No hits with e-value below 0.05

Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations

IdentityAlignment graphLength Definition Round E-value
Target151 50S ribosomal protein L15 [Candidatus Liberibacter asia
315122799155 50S ribosomal protein L15 [Candidatus Liberibacter sola 1 5e-62
86357324158 50S ribosomal protein L15 [Rhizobium etli CFN 42] Lengt 1 5e-49
150396226156 50S ribosomal protein L15 [Sinorhizobium medicae WSM419 1 2e-48
227821774157 50S ribosomal protein L15 [Sinorhizobium fredii NGR234] 1 3e-48
15965128156 50S ribosomal protein L15 [Sinorhizobium meliloti 1021] 1 4e-48
307314378156 ribosomal protein L15 [Sinorhizobium meliloti BL225C] L 1 4e-48
218674116158 50S ribosomal protein L15 [Rhizobium etli GR56] Length 1 4e-48
209548954158 50S ribosomal protein L15 [Rhizobium leguminosarum bv. 1 6e-48
190891374158 50S ribosomal protein L15 [Rhizobium etli CIAT 652] Len 1 6e-48
163760819160 putative 50S ribosomal protein L15 [Hoeflea phototrophi 1 2e-47
>gi|315122799|ref|YP_004063288.1| 50S ribosomal protein L15 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 155 Back     alignment and organism information
 Score =  240 bits (612), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 120/148 (81%), Positives = 136/148 (91%)

Query: 1   MKLNEISYDKGSCKVKKRVARGIGSGTGKTAGRGVKGQKSRSGVSVRGFEGGQMPLYRRL 60
           MKLNEI+ DKGS K +KRVARGIGSGTGKTAGRGVKGQKSRSGVSVRGFEGGQMPLYRRL
Sbjct: 1   MKLNEINCDKGSRKARKRVARGIGSGTGKTAGRGVKGQKSRSGVSVRGFEGGQMPLYRRL 60

Query: 61  PKRGFVNIAGSDFVTISLGLLQAYIDKDRLDCSSEIDASVLVASGLVRRSQRGIRILSDG 120
           PKRGFVNIA S FVT+SLG LQAY+D+ +LDCSSEID SVLV+SGL++ SQ+G+R+LSDG
Sbjct: 61  PKRGFVNIAASKFVTVSLGRLQAYVDQGKLDCSSEIDESVLVSSGLIKSSQKGVRVLSDG 120

Query: 121 DLKAKVVLRVSGASASAVEKVEKLGGQV 148
           DLK K++LRV+GASASA+ KVEKLGG V
Sbjct: 121 DLKVKLILRVTGASASAISKVEKLGGTV 148


Species: Candidatus Liberibacter solanacearum
Genus: Candidatus Liberibacter
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria
>gi|86357324|ref|YP_469216.1| 50S ribosomal protein L15 [Rhizobium etli CFN 42] Length = 158 Back     alignment and organism information
>gi|150396226|ref|YP_001326693.1| 50S ribosomal protein L15 [Sinorhizobium medicae WSM419] Length = 156 Back     alignment and organism information
>gi|227821774|ref|YP_002825744.1| 50S ribosomal protein L15 [Sinorhizobium fredii NGR234] Length = 157 Back     alignment and organism information
>gi|15965128|ref|NP_385481.1| 50S ribosomal protein L15 [Sinorhizobium meliloti 1021] Length = 156 Back     alignment and organism information
>gi|307314378|ref|ZP_07593984.1| ribosomal protein L15 [Sinorhizobium meliloti BL225C] Length = 156 Back     alignment and organism information
>gi|218674116|ref|ZP_03523785.1| 50S ribosomal protein L15 [Rhizobium etli GR56] Length = 158 Back     alignment and organism information
>gi|209548954|ref|YP_002280871.1| 50S ribosomal protein L15 [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 158 Back     alignment and organism information
>gi|190891374|ref|YP_001977916.1| 50S ribosomal protein L15 [Rhizobium etli CIAT 652] Length = 158 Back     alignment and organism information
>gi|163760819|ref|ZP_02167898.1| putative 50S ribosomal protein L15 [Hoeflea phototrophica DFL-43] Length = 160 Back     alignment and organism information

Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch

Conserved Domains in CDD Database Detected by RPS-BLAST

IdentityAlignment graphLength Definition E-value
Target151 50S ribosomal protein L15 [Candidatus Liberibacter asia
PRK05592146 PRK05592, rplO, 50S ribosomal protein L15; Reviewed 1e-49
TIGR01071145 TIGR01071, rplO_bact, ribosomal protein L15, bacterial/ 1e-32
COG0200152 COG0200, RplO, Ribosomal protein L15 [Translation, ribo 2e-27
pfam00828122 pfam00828, Ribosomal_L18e, Ribosomal protein L18e/L15 3e-19
PRK06419148 PRK06419, rpl15p, 50S ribosomal protein L15P; Reviewed 3e-04
KOG0846274 KOG0846, KOG0846, KOG0846, Mitochondrial/chloroplast ri 5e-28
>gnl|CDD|180155 PRK05592, rplO, 50S ribosomal protein L15; Reviewed Back     alignment and domain information
>gnl|CDD|162189 TIGR01071, rplO_bact, ribosomal protein L15, bacterial/organelle Back     alignment and domain information
>gnl|CDD|30549 COG0200, RplO, Ribosomal protein L15 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|144427 pfam00828, Ribosomal_L18e, Ribosomal protein L18e/L15 Back     alignment and domain information
>gnl|CDD|180560 PRK06419, rpl15p, 50S ribosomal protein L15P; Reviewed Back     alignment and domain information
>gnl|CDD|36064 KOG0846, KOG0846, KOG0846, Mitochondrial/chloroplast ribosomal protein L15/L10 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Conserved Domains in CDD Database Detected by HHsearch

IdentityAlignment graphLength Definition Probability
Target 151 50S ribosomal protein L15 [Candidatus Liberibacter asia
TIGR01071155 rplO_bact ribosomal protein L15; InterPro: IPR005749 Ri 100.0
PRK05592144 rplO 50S ribosomal protein L15; Reviewed 100.0
COG0200152 RplO Ribosomal protein L15 [Translation, ribosomal stru 100.0
KOG0846274 consensus 100.0
pfam00828122 Ribosomal_L18e Ribosomal protein L18e/L15. This family 100.0
PRK06419148 rpl15p 50S ribosomal protein L15P; Reviewed 99.85
PTZ00160147 60S ribosomal protein L27; Provisional 99.7
KOG1742147 consensus 98.27
pfam01305102 consensus 100.0
PRK04005111 50S ribosomal protein L18e; Provisional 99.09
COG1727122 RPL18A Ribosomal protein L18E [Translation, ribosomal s 98.87
PTZ00195198 60S ribosomal protein L18; Provisional 96.57
pfam0025632 consensus 98.6
KOG1714188 consensus 90.28
>TIGR01071 rplO_bact ribosomal protein L15; InterPro: IPR005749 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PRK05592 rplO 50S ribosomal protein L15; Reviewed Back     alignment and domain information
>COG0200 RplO Ribosomal protein L15 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0846 consensus Back     alignment and domain information
>pfam00828 Ribosomal_L18e Ribosomal protein L18e/L15 Back     alignment and domain information
>PRK06419 rpl15p 50S ribosomal protein L15P; Reviewed Back     alignment and domain information
>PTZ00160 60S ribosomal protein L27; Provisional Back     alignment and domain information
>KOG1742 consensus Back     alignment and domain information
>pfam01305 consensus Back     alignment and domain information
>PRK04005 50S ribosomal protein L18e; Provisional Back     alignment and domain information
>COG1727 RPL18A Ribosomal protein L18E [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PTZ00195 60S ribosomal protein L18; Provisional Back     alignment and domain information
>pfam00256 consensus Back     alignment and domain information
>KOG1714 consensus Back     alignment and domain information

Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch

Homologous Structures Detected by PSI-BLAST against Nonredundant Database

IdentityAlignment graphLength Definition E-value
Target151 50S ribosomal protein L15 [Candidatus Liberibacter asia
1p85_J144 Real Space Refined Coordinates Of The 50s Subunit F 1e-32
3fik_L143 Ternary Complex-Bound E.Coli 70s Ribosome. This Ent 2e-31
2gya_J140 Structure Of The 50s Subunit Of A Pre-Translocation 2e-30
3bbo_N257 Homology Model For The Spinach Chloroplast 50s Subu 3e-26
2j01_P150 Structure Of The Thermus Thermophilus 70s Ribosome 1e-24
3fin_P146 T. Thermophilus 70s Ribosome In Complex With Mrna, 2e-22
1nkw_J156 Crystal Structure Of The Large Ribosomal Subunit Fr 8e-22
1pnu_J141 Crystal Structure Of A Streptomycin Dependent Ribos 7e-19
3izs_O149 Localization Of The Large Subunit Ribosomal Protein 2e-04
3o58_Y149 Yeast 80s Ribosome. This Entry Consists Of The 60s 5e-04
1s1i_V148 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 5e-04
3jyw_V142 Structure Of The 60s Proteins For Eukaryotic Riboso 0.002
1ffk_J164 Crystal Structure Of The Large Ribosomal Subunit Fr 0.002
1s72_L165 Refined Crystal Structure Of The Haloarcula Marismo 0.002
gi|33357911|pdb|1P85|J Chain J, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 144 Back     alignment and structure
 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 60/150 (40%), Positives = 81/150 (54%), Gaps = 8/150 (5%)

Query: 1   MKLNEISYDKGSCKVKKRVARGIGSGTGKTAGRGVKGQKSRSGVS-VRGFEGGQMPLYRR 59
           M+LN +S  +GS K  KR+ RGIGSG GKT GRG KGQKSRSG    RGFEGGQMPLYRR
Sbjct: 1   MRLNTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRR 60

Query: 60  LPKRGFVNIAGSDFVTISLGLLQAYIDKDRLDCSSEIDASVLVASGLVRRSQRGIRILSD 119
           LPK GF +   +    I L  L              +D + L A+ ++       +++  
Sbjct: 61  LPKFGFTSRKAAITAEIRLSDLAKV-------EGGVVDLNTLKAANIIGIQIEFAKVILA 113

Query: 120 GDLKAKVVLRVSGASASAVEKVEKLGGQVI 149
           G++   V +R    +  A   +E  GG++ 
Sbjct: 114 GEVTTPVTVRGLRVTKGARAAIEAAGGKIE 143


>gi|224510741|pdb|3FIK|L Chain L, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 50s Subunit. Length = 143 Back     alignment and structure
>gi|116667444|pdb|2GYA|J Chain J, Structure Of The 50s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 140 Back     alignment and structure
>gi|189096136|pdb|3BBO|N Chain N, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 257 Back     alignment and structure
gi|116668247|pdb|2J01|P Chain P, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4). This File Contains The 50s Subunit From Molecule I. Length = 150 Back     alignment and structure
>gi|224510791|pdb|3FIN|P Chain P, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef-Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 50s Subunit. Length = 146 Back     alignment and structure
gi|28948929|pdb|1NKW|J Chain J, Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans Length = 156 Back     alignment and structure
>gi|34811563|pdb|1PNU|J Chain J, Crystal Structure Of A Streptomycin Dependent Ribosome From Escherichia Coli, 50s Subunit Of 70s Ribosome. This File, 1pnu, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site Trna Are In The Pdb File 1pns. Length = 141 Back     alignment and structure
>gi|315113314|pdb|3IZS|O Chain O, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 149 Back     alignment and structure
>gi|315113548|pdb|3O58|Y Chain Y, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit Of The First 80s In The Asymmetric Unit. Length = 149 Back     alignment and structure
>gi|49258860|pdb|1S1I|V Chain V, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 148 Back     alignment and structure
>gi|281500852|pdb|3JYW|V Chain V, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 142 Back     alignment and structure
>gi|10120929|pdb|1FFK|J Chain J, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Length = 164 Back     alignment and structure
gi|50513481|pdb|1S72|L Chain L, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 165 Back     alignment and structure

Homologous Structures in PDB70 Database Detected by RPS-BLAST

IdentityAlignment graphLength Definition E-value
Target151 50S ribosomal protein L15 [Candidatus Liberibacter asia
3bbo_N257 Ribosomal protein L15; large ribosomal subunit, spinach 4e-32
3ofq_L143 50S ribosomal protein L15; protein biosynthesis, riboso 6e-31
2j01_P150 50S ribosomal protein L15; ribosome, tRNA, paromomycin, 2e-27
3i1n_L144 50S ribosomal protein L15; ribosome structure, protein- 1e-25
2zjr_I156 50S ribosomal protein L15; ribosome, large ribosomal su 1e-25
1vq8_L165 50S ribosomal protein L15P; ribosome 50S, protein-prote 7e-22
3jyw_V142 60S ribosomal protein L28; eukaryotic ribosome, RACK1 p 4e-18
2zkr_l148 60S ribosomal protein L27A; protein-RNA complex, 60S ri 2e-14
>3bbo_N Ribosomal protein L15; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Pisum sativum} Length = 257 Back     alignment and structure
 Score =  132 bits (332), Expect = 4e-32
 Identities = 55/156 (35%), Positives = 82/156 (52%), Gaps = 5/156 (3%)

Query: 1   MKLNEISYDKGSCKVKKRVARGIGSGTGKTAGRGVKGQKSRSGVSVR-GFEGGQMPLYRR 59
            +L+ +    GS K  KR  RGI +G G + G G++GQKSRSG  +  GFEGGQMPLYRR
Sbjct: 65  FRLDNLGPQPGSRKRPKRKGRGIAAGQGASCGFGMRGQKSRSGPGIMRGFEGGQMPLYRR 124

Query: 60  LPKRGFVNIAGSDFVTISLGLLQAYIDKDRLDCSSEIDASVLVASGLV----RRSQRGIR 115
           LPK   +       +   + +    I+        E+    L A  ++    R  +  ++
Sbjct: 125 LPKLRGIAGGMHAGLPKYVNVNLTDIENAGFQDGEEVSLETLKAKRVINPSGRERKLPLK 184

Query: 116 ILSDGDLKAKVVLRVSGASASAVEKVEKLGGQVIVI 151
           IL+DG+L  K+ ++    S SA EK+E  G  +IV+
Sbjct: 185 ILADGELSKKLTIKAGAFSTSAKEKLEYAGCSLIVL 220


>3ofq_L 50S ribosomal protein L15; protein biosynthesis, ribosomes, RNA, tRNA, transfer, antibi EXIT, peptidyl, ribosomal subunit, large; 3.10A {Escherichia coli} PDB: 3fik_L 2wwq_L 3ofr_L* 3i1n_L 1p85_J 1p86_J 1vs8_L 1vs6_L 2aw4_L 2awb_L 1vt2_L 2i2v_L 2j28_L 2i2t_L* 2qao_L* 2qba_L* 2qbc_L* 2qbe_L 2qbg_L 2qbi_L* ... Length = 143 Back     alignment and structure
>2j01_P 50S ribosomal protein L15; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} SCOP: c.12.1.1 PDB: 1vsp_J 2hgj_O 2hgq_O 2hgu_O 1vsa_J 2j03_P 2jl6_P 2jl8_P 2v47_P 2v49_P 2wdi_P 2wdj_P 2wdl_P 2wdn_P 2wh2_P 2wh4_P 3d5b_P 3d5d_P 3f1f_P 3f1h_P ... Length = 150 Back     alignment and structure
>3i1n_L 50S ribosomal protein L15; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1p85_J 1p86_J 1vs8_L 2aw4_L 2awb_L 1vs6_L 2i2v_L 2j28_L 2i2t_L* 2qao_L* 2qba_L* 2qbc_L* 2qbe_L 2qbg_L 2qbi_L* 2qbk_L* 2qov_L 2qox_L 2qoz_L* 2qp1_L* ... Length = 144 Back     alignment and structure
>2zjr_I 50S ribosomal protein L15; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.12.1.1 PDB: 1nwx_J* 1nwy_J* 1sm1_J* 1xbp_J* 2zjp_I* 2zjq_I 1nkw_J 3cf5_I* 3dll_I* 1pnu_J 1pny_J 1vor_M 1vou_M 1vow_M 1voy_M 1vp0_M Length = 156 Back     alignment and structure
>1vq8_L 50S ribosomal protein L15P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_L* 1vq5_L* 1vq6_L* 1vq7_L* 1s72_L* 1vq9_L* 1vqk_L* 1vql_L* 1vqm_L* 1vqn_L* 1vqo_L* 1vqp_L* 1yhq_L* 1yi2_L* 1yij_L* 1yit_L* 1yj9_L* 1yjn_L* 1yjw_L* 2otj_L* ... Length = 165 Back     alignment and structure
>3jyw_V 60S ribosomal protein L28; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_V Length = 142 Back     alignment and structure
>2zkr_l 60S ribosomal protein L27A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 148 Back     alignment and structure

Homologous Structures in PDB70 Database Detected by HHsearch

IdentityAlignment graphLength Definition Probability
Target151 50S ribosomal protein L15 [Candidatus Liberibacter asia
3bbo_N257 Ribosomal protein L15; large ribosomal subunit, spinach 100.0
2j01_P150 50S ribosomal protein L15; ribosome, tRNA, paromomycin, 100.0
2zjr_I156 50S ribosomal protein L15; ribosome, large ribosomal su 100.0
3ofq_L143 50S ribosomal protein L15; protein biosynthesis, riboso 100.0
1vq8_L165 50S ribosomal protein L15P; ribosome 50S, protein-prote 100.0
2zkr_l148 60S ribosomal protein L27A; protein-RNA complex, 60S ri 100.0
3jyw_V142 60S ribosomal protein L28; eukaryotic ribosome, RACK1 p 100.0
1vq8_O116 50S ribosomal protein L18E; ribosome 50S, protein-prote 99.18
2zkr_o188 60S ribosomal protein L18; protein-RNA complex, 60S rib 98.58
3jyw_O121 60S ribosomal protein L18(A); eukaryotic ribosome, RACK 98.33
2zkr_l148 60S ribosomal protein L27A; protein-RNA complex, 60S ri 98.49
3jyw_V142 60S ribosomal protein L28; eukaryotic ribosome, RACK1 p 98.22
1vq8_L165 50S ribosomal protein L15P; ribosome 50S, protein-prote 91.4
>3bbo_N Ribosomal protein L15; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Pisum sativum} Back     alignment and structure
Probab=100.00  E-value=0  Score=368.81  Aligned_cols=147  Identities=39%  Similarity=0.649  Sum_probs=135.4

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCEEEECCC-CCCCCCC---CCCEEE
Q ss_conf             97666888999876761020315789898578776676423689866-444316853011676-3554656---552147
Q gi|254780242|r    1 MKLNEISYDKGSCKVKKRVARGIGSGTGKTAGRGVKGQKSRSGVSVR-GFEGGQMPLYRRLPK-RGFVNIA---GSDFVT   75 (151)
Q Consensus         1 m~L~~l~~~~g~~~~~kR~GRG~gsg~Gkt~GrG~kGqk~Rsg~~~~-gfEGGQ~Pl~rrlPK-rGF~~~~---~~~~~~   75 (151)
                      |+||||+|++||+++++|||||+|||+|||||||||||+||||+.++ ||||||||||||||| |||++.+   ..+|.+
T Consensus        65 mkLn~Lkp~~gs~k~kkRvGRG~gSG~GKTsGRG~KGQkaRsG~~~~~gFEGGQmPL~RRlPK~RGF~n~~~~~~~~~~~  144 (257)
T 3bbo_N           65 FRLDNLGPQPGSRKRPKRKGRGIAAGQGASCGFGMRGQKSRSGPGIMRGFEGGQMPLYRRLPKLRGIAGGMHAGLPKYVN  144 (257)
T ss_dssp             CCCSSSCCCCCCCSCCCCCSSCCCCSCSSSCSSSCCCCGGGTSSCSSTTCCSSCSSTTSCCCCCSSCCCCCSSCCSSSSC
T ss_pred             EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCEEEEE
T ss_conf             67477889999866774532688899886688988778888899999971789976465048767767866676206899


Q ss_pred             EEHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCC----CCCCCEEEECCCCCCCCEEEEEEEECHHHHHHHHHCCCEEEEC
Q ss_conf             751120454302455533223355554308625----4433204630443144148999982699999999749889989
Q gi|254780242|r   76 ISLGLLQAYIDKDRLDCSSEIDASVLVASGLVR----RSQRGIRILSDGDLKAKVVLRVSGASASAVEKVEKLGGQVIVI  151 (151)
Q Consensus        76 iNL~~L~~~i~~~~~~~~~~Id~~~L~~~gli~----~~~~~vKiLg~Gel~~ki~I~v~~~S~sA~ekIE~aGG~v~ii  151 (151)
                      |||+.|+.    ..+++.++||+++|++.++|.    +..++|||||+|||+.||+|+|++||++|+|+||+|||+|++|
T Consensus       145 vNL~~L~~----~~~~~~~~It~e~L~~~glI~~~~kk~k~~VKILG~Gel~~kI~Ikv~~~SksAkekIEkAGGsV~ii  220 (257)
T 3bbo_N          145 VNLTDIEN----AGFQDGEEVSLETLKAKRVINPSGRERKLPLKILADGELSKKLTIKAGAFSTSAKEKLEYAGCSLIVL  220 (257)
T ss_dssp             SCSSCCSC----SSTTTTTTTCCSSCCSSSCSSSSCCCCSCCCCCCCSSCCCSSCCCCSSCCTGGGTTSSTTTTCCEECC
T ss_pred             EEECHHHH----HCCCCCCCCCHHHHHHCCCCCCHHHHCCCCEEEECCCCCCCCEEEEEEEECHHHHHHHHHCCCEEEEE
T ss_conf             86101133----10253233689999876763200010565769952881753669999998999999999849979997



>2j01_P 50S ribosomal protein L15; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} SCOP: c.12.1.1 PDB: 1vsp_J 2hgj_O 2hgq_O 2hgu_O 1vsa_J 2j03_P 2jl6_P 2jl8_P 2v47_P 2v49_P 2wdi_P 2wdj_P 2wdl_P 2wdn_P 2wh2_P 2wh4_P 2wrj_P 2wrl_P 2wro_P 2wrr_P ... Back     alignment and structure
>2zjr_I 50S ribosomal protein L15; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.12.1.1 PDB: 1nwx_J* 1nwy_J* 1sm1_J* 1xbp_J* 2zjp_I* 2zjq_I 1nkw_J 3cf5_I* 3dll_I* 1pnu_J 1pny_J 1vor_M 1vou_M 1vow_M 1voy_M 1vp0_M Back     alignment and structure
>3ofq_L 50S ribosomal protein L15; protein biosynthesis, ribosomes, RNA, tRNA, transfer, antibi EXIT, peptidyl, ribosomal subunit, large; 3.10A {Escherichia coli} PDB: 3fik_L 2wwq_L 3ofr_L* 3i1n_L 1p85_J 1p86_J 1vs8_L 1vs6_L 2aw4_L 2awb_L 1vt2_L 2i2v_L 2j28_L 2i2t_L* 2qao_L* 2qba_L* 2qbc_L* 2qbe_L 2qbg_L 2qbi_L* ... Back     alignment and structure
>1vq8_L 50S ribosomal protein L15P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_L* 1vq5_L* 1vq6_L* 1vq7_L* 1s72_L* 1vq9_L* 1vqk_L* 1vql_L* 1vqm_L* 1vqn_L* 1vqo_L* 1vqp_L* 1yhq_L* 1yi2_L* 1yij_L* 1yit_L* 1yj9_L* 1yjn_L* 1yjw_L* 2otj_L* ... Back     alignment and structure
>2zkr_l 60S ribosomal protein L27A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>3jyw_V 60S ribosomal protein L28; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_V Back     alignment and structure
>1vq8_O 50S ribosomal protein L18E; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_O* 1vq5_O* 1vq6_O* 1vq7_O* 1s72_O* 1vq9_O* 1vqk_O* 1vql_O* 1vqm_O* 1vqn_O* 1vqo_O* 1vqp_O* 1yhq_O* 1yi2_O* 1yij_O* 1yit_O* 1yj9_O* 1yjn_O* 1yjw_O* 2otj_O* ... Back     alignment and structure
>2zkr_o 60S ribosomal protein L18; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>3jyw_O 60S ribosomal protein L18(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_O Back     alignment and structure
>2zkr_l 60S ribosomal protein L27A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>3jyw_V 60S ribosomal protein L28; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_V Back     alignment and structure
>1vq8_L 50S ribosomal protein L15P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.12.1.1 PDB: 1vq4_L* 1vq5_L* 1vq6_L* 1vq7_L* 1s72_L* 1vq9_L* 1vqk_L* 1vql_L* 1vqm_L* 1vqn_L* 1vqo_L* 1vqp_L* 1yhq_L* 1yi2_L* 1yij_L* 1yit_L* 1yj9_L* 1yjn_L* 1yjw_L* 2otj_L* ... Back     alignment and structure

Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch

Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST

IdentityAlignment graphLength Definition E-value
Target 151 50S ribosomal protein L15 [Candidatus Liberibacter asia
d2gycj1140 c.12.1.1 (J:4-143) Ribosomal protein L15 (L15p) {Escher 1e-26
d2j01p1146 c.12.1.1 (P:5-150) Ribosomal protein L15 (L15p) {Thermu 4e-25
d2zjri1141 c.12.1.1 (I:4-144) Ribosomal protein L15 (L15p) {Deinoc 6e-25
d1vqol1150 c.12.1.1 (L:1-150) Ribosomal protein L15 (L15p) {Archae 2e-19
>d2gycj1 c.12.1.1 (J:4-143) Ribosomal protein L15 (L15p) {Escherichia coli [TaxId: 562]} Length = 140 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L15 (L15p)
species: Escherichia coli [TaxId: 562]
 Score =  112 bits (281), Expect = 1e-26
 Identities = 59/146 (40%), Positives = 79/146 (54%), Gaps = 8/146 (5%)

Query: 4   NEISYDKGSCKVKKRVARGIGSGTGKTAGRGVKGQKSRSGVSVR-GFEGGQMPLYRRLPK 62
           N +S  +GS K  KR+ RGIGSG GKT GRG KGQKSRSG  VR GFEGGQMPLYRRLPK
Sbjct: 1   NTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRLPK 60

Query: 63  RGFVNIAGSDFVTISLGLLQAYIDKDRLDCSSEIDASVLVASGLVRRSQRGIRILSDGDL 122
            GF +   +    I L  L              +D + L A+ ++       +++  G++
Sbjct: 61  FGFTSRKAAITAEIRLSDLAKV-------EGGVVDLNTLKAANIIGIQIEFAKVILAGEV 113

Query: 123 KAKVVLRVSGASASAVEKVEKLGGQV 148
              V +R    +  A   +E  GG++
Sbjct: 114 TTPVTVRGLRVTKGARAAIEAAGGKI 139


>d2j01p1 c.12.1.1 (P:5-150) Ribosomal protein L15 (L15p) {Thermus thermophilus [TaxId: 274]} Length = 146 Back     information, alignment and structure
>d2zjri1 c.12.1.1 (I:4-144) Ribosomal protein L15 (L15p) {Deinococcus radiodurans [TaxId: 1299]} Length = 141 Back     information, alignment and structure
>d1vqol1 c.12.1.1 (L:1-150) Ribosomal protein L15 (L15p) {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 150 Back     information, alignment and structure

Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch

IdentityAlignment graphLength Definition Probability
Target151 50S ribosomal protein L15 [Candidatus Liberibacter asia
d2zjri1141 Ribosomal protein L15 (L15p) {Deinococcus radiodurans [ 100.0
d2j01p1146 Ribosomal protein L15 (L15p) {Thermus thermophilus [Tax 100.0
d2gycj1140 Ribosomal protein L15 (L15p) {Escherichia coli [TaxId: 100.0
d1vqol1150 Ribosomal protein L15 (L15p) {Archaeon Haloarcula maris 100.0
d1vqoo1115 Ribosomal protein L18e {Archaeon Haloarcula marismortui 99.14
>d2zjri1 c.12.1.1 (I:4-144) Ribosomal protein L15 (L15p) {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribosomal proteins L15p and L18e
superfamily: Ribosomal proteins L15p and L18e
family: Ribosomal proteins L15p and L18e
domain: Ribosomal protein L15 (L15p)
species: Deinococcus radiodurans [TaxId: 1299]
Probab=100.00  E-value=0  Score=331.85  Aligned_cols=139  Identities=46%  Similarity=0.710  Sum_probs=131.4

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCEEEECCCCCCCCCCCCCEEEEEHHHHH
Q ss_conf             66888999876761020315789898578776676423689866-44431685301167635546565521477511204
Q gi|254780242|r    4 NEISYDKGSCKVKKRVARGIGSGTGKTAGRGVKGQKSRSGVSVR-GFEGGQMPLYRRLPKRGFVNIAGSDFVTISLGLLQ   82 (151)
Q Consensus         4 ~~l~~~~g~~~~~kR~GRG~gsg~Gkt~GrG~kGqk~Rsg~~~~-gfEGGQ~Pl~rrlPKrGF~~~~~~~~~~iNL~~L~   82 (151)
                      |||+|+|||+++++|+|||++ |+|||||||||||+||||++++ +|||||||||||||||||+|+ ..+|.+|||+.|+
T Consensus         1 h~L~~~~gs~~~~kR~gRG~g-g~Gkt~GrG~KGqk~RsG~~~~~gfeGGQ~Pl~rrlPKrGf~~~-~~~~~~inl~~l~   78 (141)
T d2zjri1           1 HDLKPTPGSRKDRKRVGRGPG-GTDKTAGRGHKGQKSRSGAGKGAFFEGGRSRLIARLPKRGFNNV-GTTYEVVKLSQLQ   78 (141)
T ss_dssp             CCCCCCSSTTTCCCCSSSCCC-CCCSCSSSCCCCSSSSSCCSCCCSCSCCSSSSTTTSCCCCCCCC-CCCCCEECHHHHT
T ss_pred             CCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCEECCCCCCCCCC-CCEEEEEEHHHHH
T ss_conf             978779999668622567899-88977898888888888989887450166653541774577766-5268888863520


Q ss_pred             HHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEECCCCCCCCEEEEEEEECHHHHHHHHHCCCEEEEC
Q ss_conf             543024555332233555543086254433204630443144148999982699999999749889989
Q gi|254780242|r   83 AYIDKDRLDCSSEIDASVLVASGLVRRSQRGIRILSDGDLKAKVVLRVSGASASAVEKVEKLGGQVIVI  151 (151)
Q Consensus        83 ~~i~~~~~~~~~~Id~~~L~~~gli~~~~~~vKiLg~Gel~~ki~I~v~~~S~sA~ekIE~aGG~v~ii  151 (151)
                      .+++       .+||.+.|.+.++|....++||||++|||+.+++|+|++||++|+++||+|||+|+|+
T Consensus        79 ~~~~-------~~i~~~~L~~~~li~~~~~~VKiLg~Gel~~kl~I~v~~~S~sA~~~IE~aGG~V~l~  140 (141)
T d2zjri1          79 DLED-------TTFDRDTLEAYRLVRRKNRPVKLLASGEISRAVTVHVDAASAAAIKAVEAAGGRVVLP  140 (141)
T ss_dssp             TSCC-------CCCCTTTTHHHHHCCCCSSCCEECCCCCCCCCCCCCCSEECHHHHHHHGGGSCCCCCC
T ss_pred             CCCC-------CCHHHHHHHHHCEECCCCCCEEECCCCCCCCCEEEEEEEECHHHHHHHHHCCCEEEEE
T ss_conf             0111-------1111344322153324787857915982558778999984999999999879989960



>d2j01p1 c.12.1.1 (P:5-150) Ribosomal protein L15 (L15p) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2gycj1 c.12.1.1 (J:4-143) Ribosomal protein L15 (L15p) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vqol1 c.12.1.1 (L:1-150) Ribosomal protein L15 (L15p) {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d1vqoo1 c.12.1.1 (O:1-115) Ribosomal protein L18e {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure

Homologous Domains in MMDB70 Database Detected by RPS-BLAST

IdentityAlignment graphLength Definition E-value
Target 151 50S ribosomal protein L15 [Candidatus Liberibacter
3i1n_L_144 (L:) 50S ribosomal protein L15; ribosome structure 2e-31
3bbo_N_257 (N:) Ribosomal protein L15; large ribosomal subuni 1e-30
2j01_P_150 (P:) 50S ribosomal protein L15; ribosome, tRNA, pa 4e-29
2zjr_I_156 (I:) 50S ribosomal protein L15; ribosome, large ri 2e-27
1vq8_L_165 (L:) 50S ribosomal protein L15P; ribosome 50S, pro 2e-25
2zkr_l_148 (l:) 60S ribosomal protein L27A; protein-RNA compl 2e-20
3jyw_O_121 (O:) 60S ribosomal protein L18(A); eukaryotic ribo 8e-15
3jyw_V_49-14294 (V:49-142) 60S ribosomal protein L28; eukaryotic r 2e-13
1vq8_O_39-11678 (O:39-116) 50S ribosomal protein L18E; ribosome 50 6e-05
>3i1n_L (L:) 50S ribosomal protein L15; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1p85_J 1p86_J 1vs8_L 2aw4_L 2awb_L 1vs6_L 2i2v_L 2j28_L 2i2t_L* 2qao_L* 2qba_L* 2qbc_L* 2qbe_L 2qbg_L 2qbi_L* 2qbk_L* 2qov_L 2qox_L 2qoz_L* 2qp1_L* ...Length = 144 Back     alignment and structure
 Score =  128 bits (324), Expect = 2e-31
 Identities = 61/149 (40%), Positives = 82/149 (55%), Gaps = 8/149 (5%)

Query: 1   MKLNEISYDKGSCKVKKRVARGIGSGTGKTAGRGVKGQKSRSGVSVR-GFEGGQMPLYRR 59
           M+LN +S  +GS K  KR+ RGIGSG GKT GRG KGQKSRSG  VR GFEGGQMPLYRR
Sbjct: 1   MRLNTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRR 60

Query: 60  LPKRGFVNIAGSDFVTISLGLLQAYIDKDRLDCSSEIDASVLVASGLVRRSQRGIRILSD 119
           LPK GF +   +    I L  L              +D + L A+ ++       +++  
Sbjct: 61  LPKFGFTSRKAAITAEIRLSDLAKVEGG-------VVDLNTLKAANIIGIQIEFAKVILA 113

Query: 120 GDLKAKVVLRVSGASASAVEKVEKLGGQV 148
           G++   V +R    +  A   +E  GG++
Sbjct: 114 GEVTTPVTVRGLRVTKGARAAIEAAGGKI 142


>3bbo_N (N:) Ribosomal protein L15; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Pisum sativum}Length = 257 Back     alignment and structure
>2j01_P (P:) 50S ribosomal protein L15; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus}Length = 150 Back     alignment and structure
>2zjr_I (I:) 50S ribosomal protein L15; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans}Length = 156 Back     alignment and structure
>1vq8_L (L:) 50S ribosomal protein L15P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui}Length = 165 Back     alignment and structure
>2zkr_l (l:) 60S ribosomal protein L27A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}Length = 148 Back     alignment and structure
>3jyw_O (O:) 60S ribosomal protein L18(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_OLength = 121 Back     alignment and structure
>3jyw_V (V:49-142) 60S ribosomal protein L28; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_VLength = 94 Back     alignment and structure
>1vq8_O (O:39-116) 50S ribosomal protein L18E; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui}Length = 78 Back     alignment and structure

Homologous Domains in MMDB70 Database Detected by HHsearch

IdentityAlignment graphLength Definition Probability
Target151 50S ribosomal protein L15 [Candidatus Liberibacter asia
3i1n_L_144 50S ribosomal protein L15; ribosome structure, pro 100.0
3bbo_N_257 Ribosomal protein L15; large ribosomal subunit, sp 100.0
2j01_P_150 50S ribosomal protein L15; ribosome, tRNA, paromom 100.0
2zjr_I_156 50S ribosomal protein L15; ribosome, large ribosom 100.0
1vq8_L_165 50S ribosomal protein L15P; ribosome 50S, protein- 100.0
2zkr_l_148 60S ribosomal protein L27A; protein-RNA complex, 6 100.0
3jyw_O_121 60S ribosomal protein L18(A); eukaryotic ribosome, 99.94
3jyw_V_49-14294 60S ribosomal protein L28; eukaryotic ribosome, RA 99.9
1vq8_O_39-11678 50S ribosomal protein L18E; ribosome 50S, protein- 99.53
2zkr_o_56-188133 60S ribosomal protein L18; protein-RNA complex, 60 98.39
>3i1n_L (L:) 50S ribosomal protein L15; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1p85_J 1p86_J 1vs8_L 2aw4_L 2awb_L 1vs6_L 2i2v_L 2j28_L 2i2t_L* 2qao_L* 2qba_L* 2qbc_L* 2qbe_L 2qbg_L 2qbi_L* 2qbk_L* 2qov_L 2qox_L 2qoz_L* 2qp1_L* ... Back     alignment and structure
Probab=100.00  E-value=0  Score=311.82  Aligned_cols=142  Identities=43%  Similarity=0.634  Sum_probs=138.1

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCEEEECCCCCCCCCCCCCEEEEEHH
Q ss_conf             97666888999876761020315789898578776676423689866-44431685301167635546565521477511
Q gi|254780242|r    1 MKLNEISYDKGSCKVKKRVARGIGSGTGKTAGRGVKGQKSRSGVSVR-GFEGGQMPLYRRLPKRGFVNIAGSDFVTISLG   79 (151)
Q Consensus         1 m~L~~l~~~~g~~~~~kR~GRG~gsg~Gkt~GrG~kGqk~Rsg~~~~-gfEGGQ~Pl~rrlPKrGF~~~~~~~~~~iNL~   79 (151)
                      |+||||+|+||++++++|+|||+|||+|||||||||||++|+|...+ +|||||||+|+|+||+||+++++.+|.+|||+
T Consensus         1 ~~L~~l~~~~g~~~~k~R~gRg~gsG~gkt~grg~kg~~~r~g~~~~~gfeggq~p~~~~~pK~Gf~~~~~~~~~~inl~   80 (144)
T 3i1n_L            1 MRLNTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRLPKFGFTSRKAAITAEIRLS   80 (144)
T ss_dssp             -CTTSCCCCTTTSCCCCCCSSCSTTSSCSTTSSCSSSTTSSSSCCCCTTCCTTSCCHHHHSCCCCCCCSTGGGEEECCST
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCCEEEEEEEEH
T ss_conf             96365878988841640467878899997888888998776798868664567555521165340121231058776600


Q ss_pred             HHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEECCCCCCCCEEEEEEEECHHHHHHHHHCCCEEE
Q ss_conf             2045430245553322335555430862544332046304431441489999826999999997498899
Q gi|254780242|r   80 LLQAYIDKDRLDCSSEIDASVLVASGLVRRSQRGIRILSDGDLKAKVVLRVSGASASAVEKVEKLGGQVI  149 (151)
Q Consensus        80 ~L~~~i~~~~~~~~~~Id~~~L~~~gli~~~~~~vKiLg~Gel~~ki~I~v~~~S~sA~ekIE~aGG~v~  149 (151)
                      +|+.+++       ++||.+.|.+.+++......+|||++|+|+.||+|+|++||++|+|+||+|||+|+
T Consensus        81 ~l~~~~~-------~~i~~~~l~~~~i~~~~~~~~KlLg~G~l~~~l~Ikv~~~S~~A~ekIe~aGG~v~  143 (144)
T 3i1n_L           81 DLAKVEG-------GVVDLNTLKAANIIGIQIEFAKVILAGEVTTPVTVRGLRVTKGARAAIEAAGGKIE  143 (144)
T ss_dssp             TTTTSSS-------SEECTTTTTTTTSSCTTCCEEECCCCCCCCSCCEEESSBCCHHHHHHHHHTTCEEE
T ss_pred             HHHHHHC-------CCCHHHHHHHCCEEECCCEEEEEECCCCCCCCEEEEEEEECHHHHHHHHHHCCEEE
T ss_conf             1223230-------34103454432656401000178606831677799999858999999998198552



>3bbo_N (N:) Ribosomal protein L15; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Pisum sativum} Back     alignment and structure
>2j01_P (P:) 50S ribosomal protein L15; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} Back     alignment and structure
>2zjr_I (I:) 50S ribosomal protein L15; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} Back     alignment and structure
>1vq8_L (L:) 50S ribosomal protein L15P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} Back     alignment and structure
>2zkr_l (l:) 60S ribosomal protein L27A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>3jyw_O (O:) 60S ribosomal protein L18(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_O Back     alignment and structure
>3jyw_V (V:49-142) 60S ribosomal protein L28; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_V Back     alignment and structure
>1vq8_O (O:39-116) 50S ribosomal protein L18E; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} Back     alignment and structure
>2zkr_o (o:56-188) 60S ribosomal protein L18; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure