254780245

254780245

50S ribosomal protein L18

GeneID in NCBI database:8209226Locus tag:CLIBASIA_00650
Protein GI in NCBI database:254780245Protein Accession:YP_003064658.1
Gene range:-(135224, 135586)Protein Length:120aa
Gene description:50S ribosomal protein L18
COG prediction:[J] Ribosomal protein L18
KEGG prediction:rplR; 50S ribosomal protein L18; K02881 large subunit ribosomal protein L18
SEED prediction:LSU ribosomal protein L18p (L5e)
Pathway involved in KEGG:Ribosome [PATH:las03010]
Subsystem involved in SEED:Ribosome LSU bacterial
sequencesequence profile

Prediction of Local Sequence Properties

SourceSummaryResult
scaler
NCBI Databasesequence
PSIPREDsecondary structure
SSPROsecondary structure
DISEMBLcoil and loop
DISEMBLflexible loop
SEGlow complexity
DISOPREDdisordered
DISEMBLmissing residues
DISPROdisordered
TMHMMnone TM-Helix
TOPPREDnone TM-Helix
HMMTOPnone TM-Helix
MEMSATnone TM-Helix
MEMSAT_SVMnone TM-Helix
PHOBIUSnone TM-Helix
SignalP_HMMno
SignalP_NNno
COILScoiled coil
70% MSAconservation map
90% MSAconservation map
  
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120
MATKKKVLARRISRIRRHLKSVSRGRLRLSVCRSSKHIYGQIIDDSIGHTLVSASSLNEPLRSSLKTGANIVAATAVGNLLVERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGVSF
cccHHHHHHHHHHHHHHHHHcccccccEEEEEcccccEEEEEEEccccEEEEEEEcccHHHHHHccccccHHHHHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHHccccc
ccccHHHHHHHHHHHHHHccccccccccEEEEEccccEEEEEEEcccccEEEEcccccHHHHHcccccccHHHHHHHHHHHHHHHHHccccEEEEccccccccHHHHHHHHHHHHccccc
MATKKKVLARRISRIRRHLKSVSrgrlrlsvcrsskhiygqiiddsightlvsasslneplrsslktGANIVAATAVGNLLVERAVKVGVKsvyfdrgkhlycGRIAALADAVRKGGVSF
matkkkvlarrisrirrhlksvsrgrlrlsvcrsSKHIYGQIIDDSIGHTLVSASSLNEPLRSSLKTGANIVAATAVGNLLVERAVKVGVKsvyfdrgkhlyCGRIAALADAVRKGGVSF
MATKKKVLARRISRIRRHLKSVSRGRLRLSVCRSSKHIYGQIIDDSIGHTLVSASSLNEPLRSSLKTGANIVAATAVGNLLVERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGVSF
************SRIRRHLKSVSRGRLRLSVCRSSKHIYGQIIDDSIGHTLVSASSLN************IVAATAVGNLLVERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGVSF
********ARRISRIRRHLKSVSRGRLRLSVCRSSKHIYGQIIDDSIGHTLVSASSLNEPLRSSLKTGANIVAATAVGNLLVERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGVSF
*************RIRRHLKSVSRGRLRLSVCRSSKHIYGQIIDDSIGHTLVSASSLNEPLRSSLKTGANIVAATAVGNLLVERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKG*VSF
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MATKKKVLARRISRIRRHLKSVSRGRLRLSVCRSSKHIYGQIIDDSIGHTLVSASSLNEPLRSSLKTGANIVAATAVGNLLVERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGVSF
MATKKKVLARRISRIRRHLKSVSRGRLRLSVCRSSKHIYGQIIDDSIGHTLVSASSLNEPLRSSLKTGANIVAATAVGNLLVERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGVSF
MATKKKVLARRISRIRRHLKSVSRGRLRLSVCRSSKHIYGQIIDDSIGHTLVSASSLNEPLRSSLKTGANIVAATAVGNLLVERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGVSF

Close Homologs Detected by BLAST or PSI-BLAST

Homolog within the Genome Detected by BLAST

No hits with e-value below 0.05

Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations

IdentityAlignment graphLength Definition Round E-value
Target120 50S ribosomal protein L18 [Candidatus Liberibacter asia
315122802120 50S ribosomal protein L18 [Candidatus Liberibacter sola 1 1e-47
116251556120 50S ribosomal protein L18 [Rhizobium leguminosarum bv. 1 1e-34
15965125120 50S ribosomal protein L18 [Sinorhizobium meliloti 1021] 1 5e-34
222085691120 ribosomal protein L18 [Agrobacterium radiobacter K84] L 1 6e-34
209548951120 50S ribosomal protein L18 [Rhizobium leguminosarum bv. 1 9e-34
150396223120 50S ribosomal protein L18 [Sinorhizobium medicae WSM419 1 2e-33
86357321120 50S ribosomal protein L18 [Rhizobium etli CFN 42] Lengt 1 3e-32
190891371120 50S ribosomal protein L18 [Rhizobium etli CIAT 652] Len 1 3e-32
163760815120 50S ribosomal protein L18 [Hoeflea phototrophica DFL-43 1 6e-32
222148382120 50S ribosomal protein L18 [Agrobacterium vitis S4] Leng 1 9e-31
>gi|315122802|ref|YP_004063291.1| 50S ribosomal protein L18 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 120 Back     alignment and organism information
 Score =  192 bits (489), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 94/120 (78%), Positives = 107/120 (89%)

Query: 1   MATKKKVLARRISRIRRHLKSVSRGRLRLSVCRSSKHIYGQIIDDSIGHTLVSASSLNEP 60
           M  KKK LARR SRIRR+LK V++G LRLSV RSSKHIYGQIIDD++GHTL SASSLNEP
Sbjct: 1   MTIKKKALARRTSRIRRNLKRVTKGHLRLSVYRSSKHIYGQIIDDNVGHTLASASSLNEP 60

Query: 61  LRSSLKTGANIVAATAVGNLLVERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGVSF 120
           L SSLKTG+N+ AATAVG+LL ERA KVGVK++YFDRG +LYCGRIAALADAVRKGG++F
Sbjct: 61  LLSSLKTGSNVAAATAVGSLLAERAAKVGVKAIYFDRGPYLYCGRIAALADAVRKGGIAF 120


Species: Candidatus Liberibacter solanacearum
Genus: Candidatus Liberibacter
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria
>gi|116251556|ref|YP_767394.1| 50S ribosomal protein L18 [Rhizobium leguminosarum bv. viciae 3841] Length = 120 Back     alignment and organism information
>gi|15965125|ref|NP_385478.1| 50S ribosomal protein L18 [Sinorhizobium meliloti 1021] Length = 120 Back     alignment and organism information
>gi|222085691|ref|YP_002544221.1| ribosomal protein L18 [Agrobacterium radiobacter K84] Length = 120 Back     alignment and organism information
>gi|209548951|ref|YP_002280868.1| 50S ribosomal protein L18 [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 120 Back     alignment and organism information
>gi|150396223|ref|YP_001326690.1| 50S ribosomal protein L18 [Sinorhizobium medicae WSM419] Length = 120 Back     alignment and organism information
>gi|86357321|ref|YP_469213.1| 50S ribosomal protein L18 [Rhizobium etli CFN 42] Length = 120 Back     alignment and organism information
>gi|190891371|ref|YP_001977913.1| 50S ribosomal protein L18 [Rhizobium etli CIAT 652] Length = 120 Back     alignment and organism information
>gi|163760815|ref|ZP_02167894.1| 50S ribosomal protein L18 [Hoeflea phototrophica DFL-43] Length = 120 Back     alignment and organism information
>gi|222148382|ref|YP_002549339.1| 50S ribosomal protein L18 [Agrobacterium vitis S4] Length = 120 Back     alignment and organism information

Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch

Conserved Domains in CDD Database Detected by RPS-BLAST

IdentityAlignment graphLength Definition E-value
Target120 50S ribosomal protein L18 [Candidatus Liberibacter asia
PRK05593117 PRK05593, rplR, 50S ribosomal protein L18; Reviewed 7e-32
pfam00861119 pfam00861, Ribosomal_L18p, Ribosomal L18p/L5e family 8e-23
COG0256125 COG0256, RplR, Ribosomal protein L18 [Translation, ribo 1e-22
cd00432103 cd00432, Ribosomal_L18_L5e, Ribosomal L18/L5e: L18 (L5e 3e-21
TIGR00060114 TIGR00060, L18_bact, ribosomal protein L18, bacterial t 1e-20
PTZ00032211 PTZ00032, PTZ00032, 60S ribosomal protein L18; Provisio 5e-11
CHL00139109 CHL00139, rpl18, ribosomal protein L18; Validated 3e-24
>gnl|CDD|180156 PRK05593, rplR, 50S ribosomal protein L18; Reviewed Back     alignment and domain information
>gnl|CDD|144453 pfam00861, Ribosomal_L18p, Ribosomal L18p/L5e family Back     alignment and domain information
>gnl|CDD|30605 COG0256, RplR, Ribosomal protein L18 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|88603 cd00432, Ribosomal_L18_L5e, Ribosomal L18/L5e: L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit Back     alignment and domain information
>gnl|CDD|129170 TIGR00060, L18_bact, ribosomal protein L18, bacterial type Back     alignment and domain information
>gnl|CDD|173330 PTZ00032, PTZ00032, 60S ribosomal protein L18; Provisional Back     alignment and domain information
>gnl|CDD|177061 CHL00139, rpl18, ribosomal protein L18; Validated Back     alignment and domain information

Conserved Domains in CDD Database Detected by HHsearch

IdentityAlignment graphLength Definition Probability
Target 120 50S ribosomal protein L18 [Candidatus Liberibacter asia
PRK05593115 rplR 50S ribosomal protein L18; Reviewed 100.0
TIGR00060118 L18_bact ribosomal protein L18; InterPro: IPR004389 Rib 100.0
CHL00139109 rpl18 ribosomal protein L18; Validated 100.0
pfam00861119 Ribosomal_L18p Ribosomal L18p/L5e family. This family i 100.0
COG0256125 RplR Ribosomal protein L18 [Translation, ribosomal stru 100.0
cd00432103 Ribosomal_L18_L5e Ribosomal L18/L5e: L18 (L5e) is a rib 100.0
PTZ00032211 60S ribosomal protein L18; Provisional 99.98
PRK08569193 rpl18p 50S ribosomal protein L18P; Reviewed 99.6
PTZ00069 300 60S ribosomal protein L5; Provisional 99.18
PTZ00090214 40S ribosomal protein S11; Provisional 96.5
KOG3333188 consensus 98.58
PRK05309126 30S ribosomal protein S11; Validated 96.46
CHL00041116 rps11 ribosomal protein S11 96.44
pfam00411109 Ribosomal_S11 Ribosomal protein S11. 96.39
TIGR03632108 bact_S11 30S ribosomal protein S11. This model describe 96.23
PRK09607129 rps11p 30S ribosomal protein S11P; Reviewed 93.5
TIGR03628114 arch_S11P archaeal ribosomal protein S11P. This model d 91.6
KOG0875 264 consensus 95.58
>PRK05593 rplR 50S ribosomal protein L18; Reviewed Back     alignment and domain information
>TIGR00060 L18_bact ribosomal protein L18; InterPro: IPR004389 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>CHL00139 rpl18 ribosomal protein L18; Validated Back     alignment and domain information
>pfam00861 Ribosomal_L18p Ribosomal L18p/L5e family Back     alignment and domain information
>COG0256 RplR Ribosomal protein L18 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00432 Ribosomal_L18_L5e Ribosomal L18/L5e: L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit Back     alignment and domain information
>PTZ00032 60S ribosomal protein L18; Provisional Back     alignment and domain information
>PRK08569 rpl18p 50S ribosomal protein L18P; Reviewed Back     alignment and domain information
>PTZ00069 60S ribosomal protein L5; Provisional Back     alignment and domain information
>PTZ00090 40S ribosomal protein S11; Provisional Back     alignment and domain information
>KOG3333 consensus Back     alignment and domain information
>PRK05309 30S ribosomal protein S11; Validated Back     alignment and domain information
>CHL00041 rps11 ribosomal protein S11 Back     alignment and domain information
>pfam00411 Ribosomal_S11 Ribosomal protein S11 Back     alignment and domain information
>TIGR03632 bact_S11 30S ribosomal protein S11 Back     alignment and domain information
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed Back     alignment and domain information
>TIGR03628 arch_S11P archaeal ribosomal protein S11P Back     alignment and domain information
>KOG0875 consensus Back     alignment and domain information

Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch

Homologous Structures Detected by PSI-BLAST against Nonredundant Database

IdentityAlignment graphLength Definition E-value
Target120 50S ribosomal protein L18 [Candidatus Liberibacter asia
3bbo_Q161 Homology Model For The Spinach Chloroplast 50s Subu 7e-34
1ovy_A120 Solution Structure Of Ribosomal Protein L18 From Ba 3e-33
2j01_S112 Structure Of The Thermus Thermophilus 70s Ribosome 3e-26
3mrz_O111 Recognition Of The Amber Stop Codon By Release Fact 5e-26
1ily_A90 Solution Structure Of Ribosomal Protein L18 Of Ther 5e-24
3fin_S99 T. Thermophilus 70s Ribosome In Complex With Mrna, 9e-23
3fik_O116 Ternary Complex-Bound E.Coli 70s Ribosome. This Ent 4e-22
1p85_M117 Real Space Refined Coordinates Of The 50s Subunit F 4e-22
3pyo_O98 Crystal Structure Of A Complex Containing Domain 3 8e-22
2gya_M113 Structure Of The 50s Subunit Of A Pre-Translocation 1e-20
1nkw_M114 Crystal Structure Of The Large Ribosomal Subunit Fr 5e-19
1nwx_M113 Complex Of The Large Ribosomal Subunit From Deinoco 3e-18
1pnu_M111 Crystal Structure Of A Streptomycin Dependent Ribos 5e-18
1s72_N187 Refined Crystal Structure Of The Haloarcula Marismo 5e-13
1ffk_K186 Crystal Structure Of The Large Ribosomal Subunit Fr 8e-13
gi|189096139|pdb|3BBO|Q Chain Q, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 161 Back     alignment and structure
 Score =  146 bits (370), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 47/121 (38%), Positives = 69/121 (57%), Gaps = 3/121 (2%)

Query: 2   ATKKKVLARRISRIRRHLKSVSRGRLRLSVCRSSKHIYGQIIDDSIGHTLVSASSLNEPL 61
            T+++    R  RIR+ ++     R RL V RS+KH+Y Q+IDDS  HTL SAS++ + +
Sbjct: 42  KTRREDRTARHVRIRKKVEGTPE-RPRLCVFRSNKHLYVQVIDDSKMHTLASASTMQKSI 100

Query: 62  RSSLKTG--ANIVAATAVGNLLVERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGVS 119
              L       I  A  VG ++    ++ G+  V FDRG + Y GR+ ALADA R+ G+ 
Sbjct: 101 SEELDYSSSPTIEVAKKVGEVIASACLEKGITKVAFDRGGYPYHGRVKALADAAREKGLQ 160

Query: 120 F 120
           F
Sbjct: 161 F 161


gi|46015056|pdb|1OVY|A Chain A, Solution Structure Of Ribosomal Protein L18 From Bacillus Stearothermophilus Length = 120 Back     alignment and structure
gi|116668250|pdb|2J01|S Chain S, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4). This File Contains The 50s Subunit From Molecule I. Length = 112 Back     alignment and structure
>gi|300508643|pdb|3MRZ|O Chain O, Recognition Of The Amber Stop Codon By Release Factor Rf1. This Entry 3mrz Contains 50s Ribosomal Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 3ms0. Molecule A In The Same Asymmetric Unit Is Deposited As 3mr8 (50s) And 3ms1 (30s). Length = 111 Back     alignment and structure
>gi|159162486|pdb|1ILY|A Chain A, Solution Structure Of Ribosomal Protein L18 Of Thermus Thermophilus Length = 90 Back     alignment and structure
>gi|224510794|pdb|3FIN|S Chain S, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef-Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 50s Subunit Length = 99 Back     alignment and structure
>gi|224510744|pdb|3FIK|O Chain O, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 50s Subunit. Length = 116 Back     alignment and structure
gi|33357914|pdb|1P85|M Chain M, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 117 Back     alignment and structure
>gi|322812586|pdb|3PYO|O Chain O, Crystal Structure Of A Complex Containing Domain 3 From The Psiv Igr Ires Rna Bound To The 70s Ribosome. This File Contains The 50s Subunit Of The First 70s Ribosome. Length = 98 Back     alignment and structure
>gi|116667447|pdb|2GYA|M Chain M, Structure Of The 50s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 113 Back     alignment and structure
gi|28948932|pdb|1NKW|M Chain M, Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans Length = 114 Back     alignment and structure
>gi|29726800|pdb|1NWX|M Chain M, Complex Of The Large Ribosomal Subunit From Deinococcus Radiodurans With Abt-773 Length = 113 Back     alignment and structure
>gi|34811566|pdb|1PNU|M Chain M, Crystal Structure Of A Streptomycin Dependent Ribosome From Escherichia Coli, 50s Subunit Of 70s Ribosome. This File, 1pnu, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site Trna Are In The Pdb File 1pns. Length = 111 Back     alignment and structure
gi|50513483|pdb|1S72|N Chain N, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 187 Back     alignment and structure
>gi|10120930|pdb|1FFK|K Chain K, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Length = 186 Back     alignment and structure

Homologous Structures in PDB70 Database Detected by RPS-BLAST

IdentityAlignment graphLength Definition E-value
Target120 50S ribosomal protein L18 [Candidatus Liberibacter asia
3ofq_O116 50S ribosomal protein L18; protein biosynthesis, riboso 2e-25
3bbo_Q161 Ribosomal protein L18; large ribosomal subunit, spinach 3e-23
3i1n_O117 50S ribosomal protein L18; ribosome structure, protein- 5e-23
1ovy_A120 50S ribosomal protein L18; ribosome; NMR {Geobacillus s 7e-23
2j01_S112 50S ribosomal protein L18; ribosome, tRNA, paromomycin, 3e-22
2zjr_L114 50S ribosomal protein L18; ribosome, large ribosomal su 1e-19
1vq8_N187 50S ribosomal protein L18P; ribosome 50S, protein-prote 5e-17
3jyw_E 237 60S ribosomal protein L5; eukaryotic ribosome, RACK1 pr 8e-04
2zkr_n 297 60S ribosomal protein L5; protein-RNA complex, 60S ribo 0.002
>3ofq_O 50S ribosomal protein L18; protein biosynthesis, ribosomes, RNA, tRNA, transfer, antibi EXIT, peptidyl, ribosomal subunit, large; 3.10A {Escherichia coli} PDB: 3fik_O 2wwq_O 3ofr_O* 3i1n_O 1p85_M 1p86_M 1vs8_O 1vs6_O 2aw4_O 2awb_O 1vt2_O 2i2v_O 2j28_O 2i2t_O* 2qao_O* 2qba_O* 2qbc_O* 2qbe_O 2qbg_O 2qbi_O* ... Length = 116 Back     alignment and structure
 Score =  109 bits (274), Expect = 2e-25
 Identities = 50/117 (42%), Positives = 69/117 (58%), Gaps = 2/117 (1%)

Query: 4   KKKVLARRISRIRRHLKSVSRGRLRLSVCRSSKHIYGQIIDDSIGHTLVSASSLNEPLRS 63
           KK    RR +R RR L+ +  G  RL V R+ +HIY Q+I  +    LV+AS++ + +  
Sbjct: 2   KKSARIRRATRARRKLQEL--GATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAE 59

Query: 64  SLKTGANIVAATAVGNLLVERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGVSF 120
            LK   N  AA AVG  + ERA++ G+K V FDR    Y GR+ ALADA R+ G+ F
Sbjct: 60  QLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF 116


>3bbo_Q Ribosomal protein L18; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Vitis vinifera} Length = 161 Back     alignment and structure
>3i1n_O 50S ribosomal protein L18; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1p85_M 1p86_M 1vs8_O 2aw4_O 2awb_O 1vs6_O 2i2v_O 2j28_O 2i2t_O* 2qao_O* 2qba_O* 2qbc_O* 2qbe_O 2qbg_O 2qbi_O* 2qbk_O* 2qov_O 2qox_O 2qoz_O* 2qp1_O* ... Length = 117 Back     alignment and structure
>1ovy_A 50S ribosomal protein L18; ribosome; NMR {Geobacillus stearothermophilus} SCOP: c.55.4.1 Length = 120 Back     alignment and structure
>2j01_S 50S ribosomal protein L18; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1vsp_M 2hgj_R 2hgq_R 2hgu_R 1vsa_M 2j03_S 2jl6_S 2jl8_S 2v47_S 2v49_S 2wdi_S 2wdj_S 2wdl_S 2wdn_S 2wh2_S 2wh4_S 3d5b_S 3d5d_S 3f1f_S 3f1h_S ... Length = 112 Back     alignment and structure
>2zjr_L 50S ribosomal protein L18; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.55.4.1 PDB: 1sm1_M* 2zjp_L* 2zjq_L 1nkw_M 3cf5_L* 3dll_L* 1nwy_M* 1nwx_M* 1xbp_M* 1pnu_M 1pny_M 1vor_P 1vou_P 1vow_P 1voy_P 1vp0_P Length = 114 Back     alignment and structure
>1vq8_N 50S ribosomal protein L18P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.55.4.1 PDB: 1vq4_N* 1vq5_N* 1vq6_N* 1vq7_N* 1s72_N* 1vq9_N* 1vqk_N* 1vql_N* 1vqm_N* 1vqn_N* 1vqo_N* 1vqp_N* 1yhq_N* 1yi2_N* 1yij_N* 1yit_N* 1yj9_N* 1yjn_N* 1yjw_N* 2otj_N* ... Length = 187 Back     alignment and structure
>3jyw_E 60S ribosomal protein L5; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_E Length = 237 Back     alignment and structure
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 297 Back     alignment and structure

Homologous Structures in PDB70 Database Detected by HHsearch

IdentityAlignment graphLength Definition Probability
Target120 50S ribosomal protein L18 [Candidatus Liberibacter asia
3bbo_Q161 Ribosomal protein L18; large ribosomal subunit, spinach 100.0
1ovy_A120 50S ribosomal protein L18; ribosome; NMR {Geobacillus s 100.0
3ofq_O116 50S ribosomal protein L18; protein biosynthesis, riboso 100.0
2j01_S112 50S ribosomal protein L18; ribosome, tRNA, paromomycin, 100.0
2zjr_L114 50S ribosomal protein L18; ribosome, large ribosomal su 100.0
1vq8_N187 50S ribosomal protein L18P; ribosome 50S, protein-prote 100.0
2zkr_n 297 60S ribosomal protein L5; protein-RNA complex, 60S ribo 99.46
3jyw_E237 60S ribosomal protein L5; eukaryotic ribosome, RACK1 pr 99.2
2vqe_K129 30S ribosomal protein S11, 30S ribosomal protein S6; tR 97.18
3ofo_K117 30S ribosomal protein S11; protein biosynthesis, riboso 96.2
2zkq_k151 40S ribosomal protein S14E; protein-RNA complex, 40S ri 95.79
3bbn_K140 Ribosomal protein S11; small ribosomal subunit, spinach 95.65
1s1h_K136 RP59A, 40S ribosomal protein S14-A; 80S ribosome, 40S r 94.93
>3bbo_Q Ribosomal protein L18; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Vitis vinifera} Back     alignment and structure
Probab=100.00  E-value=0  Score=295.91  Aligned_cols=118  Identities=39%  Similarity=0.614  Sum_probs=110.2

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEEEEEEECCCCEEEEEEEECCCHHCCC--CCCCCCHHHHHHHHH
Q ss_conf             887999998998776875057878824999963870999999627975999985021000001--346866789999999
Q gi|254780245|r    2 ATKKKVLARRISRIRRHLKSVSRGRLRLSVCRSSKHIYGQIIDDSIGHTLVSASSLNEPLRSS--LKTGANIVAATAVGN   79 (120)
Q Consensus         2 ~~k~~~~~kR~~R~R~k~k~~~~~~pRL~V~rSnkhiyAQiIdd~~~~tl~saST~~k~~~~~--~~~~~ni~aA~~vG~   79 (120)
                      -++++.+.+|++|+|+++++++ ++|||+|||||+|||||||||.+++||+++||++++++..  ....+|+++|+.||+
T Consensus        42 k~r~~~R~rR~~RiRkKi~gta-~rPRL~VfrSnkhIYAQiIDD~~~~tL~saSTl~K~lk~~~~~~~~~nieaA~~vG~  120 (161)
T 3bbo_Q           42 KTRREDRTARHVRIRKKVEGTP-ERPRLCVFRSNKHLYVQVIDDSKMHTLASASTMQKSISEELDYSSSPTIEVAKKVGE  120 (161)
T ss_dssp             CCCCCCGGGTSCCSCSGGGGSS-SCCCCEEEECSSCEEEEEECCTTSCEEEEEEHHHHHHHHCCTTCCSSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCC-CCCEEEEEECCCEEEEEEEECCCCCEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf             7799999999999999860789-997799997089689999974799289998543113555403476138999999999


Q ss_pred             HHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             99999997799799983898631225999999999658789
Q gi|254780245|r   80 LLVERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGVSF  120 (120)
Q Consensus        80 ~ia~r~~~~gI~~v~FDR~g~~yHGrvka~ad~~R~~Gl~F  120 (120)
                      +||++++++||++|+||||||+|||||+||||++||+||+|
T Consensus       121 ~iA~kak~kgI~~VvFDRgg~~YHGRVkAlAd~aRe~GL~F  161 (161)
T 3bbo_Q          121 VIASACLEKGITKVAFDRGGYPYHGRVKALADAAREKGLQF  161 (161)
T ss_dssp             HSSSHHHHTSSCCCCCCCSSSCSSSTTHHHHHHHTTTTCCC
T ss_pred             HHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCC
T ss_conf             99999998799889981799710059999999999848889



>1ovy_A 50S ribosomal protein L18; ribosome; NMR {Geobacillus stearothermophilus} SCOP: c.55.4.1 Back     alignment and structure
>3ofq_O 50S ribosomal protein L18; protein biosynthesis, ribosomes, RNA, tRNA, transfer, antibi EXIT, peptidyl, ribosomal subunit, large; 3.10A {Escherichia coli} PDB: 3fik_O 2wwq_O 3ofr_O* 3i1n_O 1p85_M 1p86_M 1vs8_O 1vs6_O 2aw4_O 2awb_O 1vt2_O 2i2v_O 2j28_O 2i2t_O* 2qao_O* 2qba_O* 2qbc_O* 2qbe_O 2qbg_O 2qbi_O* ... Back     alignment and structure
>2j01_S 50S ribosomal protein L18; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1vsp_M 2hgj_R 2hgq_R 2hgu_R 1vsa_M 2j03_S 2jl6_S 2jl8_S 2v47_S 2v49_S 2wdi_S 2wdj_S 2wdl_S 2wdn_S 2wh2_S 2wh4_S 2wrj_S 2wrl_S 2wro_S 2wrr_S ... Back     alignment and structure
>2zjr_L 50S ribosomal protein L18; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.55.4.1 PDB: 1sm1_M* 2zjp_L* 2zjq_L 1nkw_M 3cf5_L* 3dll_L* 1nwy_M* 1nwx_M* 1xbp_M* 1pnu_M 1pny_M 1vor_P 1vou_P 1vow_P 1voy_P 1vp0_P Back     alignment and structure
>1vq8_N 50S ribosomal protein L18P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.55.4.1 PDB: 1vq4_N* 1vq5_N* 1vq6_N* 1vq7_N* 1s72_N* 1vq9_N* 1vqk_N* 1vql_N* 1vqm_N* 1vqn_N* 1vqo_N* 1vqp_N* 1yhq_N* 1yi2_N* 1yij_N* 1yit_N* 1yj9_N* 1yjn_N* 1yjw_N* 2otj_N* ... Back     alignment and structure
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>3jyw_E 60S ribosomal protein L5; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_E Back     alignment and structure
>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ... Back     alignment and structure
>3ofo_K 30S ribosomal protein S11; protein biosynthesis, ribosomes, RNA, tRNA, transfer, eryThr ketolide, macrolide, antibiotic, EXIT, peptidyl; 3.10A {Escherichia coli} PDB: 3fih_K* 3iy8_K 2wwl_K 3ofp_K 3i1m_K 1vs7_K* 3e1a_C 3e1c_C 1vs5_K 3i1o_K 3i1q_K 3i1s_K 3i1z_K 3i21_K 3kc4_K 3or9_K 3ora_K 2qal_K* 1p6g_K 1p87_K ... Back     alignment and structure
>2zkq_k 40S ribosomal protein S14E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 3jyv_K* Back     alignment and structure
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Back     alignment and structure
>1s1h_K RP59A, 40S ribosomal protein S14-A; 80S ribosome, 40S ribosomal subunit, EEF2, tRNA translocation, sordarin, cryo-EM; 11.70A {Saccharomyces cerevisiae} SCOP: i.1.1.1 Back     alignment and structure

Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch

Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST

IdentityAlignment graphLength Definition E-value
Target 120 50S ribosomal protein L18 [Candidatus Liberibacter asia
d2gycm1113 c.55.4.1 (M:3-115) Ribosomal protein L18 (L18p) {Escher 4e-21
d2j01s186 c.55.4.1 (S:23-108) Ribosomal protein L18 (L18p) {Therm 7e-21
d1ovya_97 c.55.4.1 (A:) Ribosomal protein L18 (L18p) {Bacillus st 1e-19
d2zjrl1104 c.55.4.1 (L:8-111) Ribosomal protein L18 (L18p) {Deinoc 7e-19
d1vqon1186 c.55.4.1 (N:1-186) Ribosomal protein L18 (L18p) {Archae 3e-17
>d2gycm1 c.55.4.1 (M:3-115) Ribosomal protein L18 (L18p) {Escherichia coli [TaxId: 562]} Length = 113 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein L18 (L18p)
species: Escherichia coli [TaxId: 562]
 Score = 93.9 bits (233), Expect = 4e-21
 Identities = 49/115 (42%), Positives = 68/115 (59%), Gaps = 2/115 (1%)

Query: 4   KKKVLARRISRIRRHLKSVSRGRLRLSVCRSSKHIYGQIIDDSIGHTLVSASSLNEPLRS 63
           KK    RR +R RR L+ +  G  RL V R+ +HIY Q+I  +    LV+AS++ + +  
Sbjct: 1   KKSARIRRATRARRKLQEL--GATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAE 58

Query: 64  SLKTGANIVAATAVGNLLVERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGV 118
            LK   N  AA AVG  + ERA++ G+K V FDR    Y GR+ ALADA R+ G+
Sbjct: 59  QLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGL 113


>d2j01s1 c.55.4.1 (S:23-108) Ribosomal protein L18 (L18p) {Thermus thermophilus [TaxId: 274]} Length = 86 Back     information, alignment and structure
>d1ovya_ c.55.4.1 (A:) Ribosomal protein L18 (L18p) {Bacillus stearothermophilus [TaxId: 1422]} Length = 97 Back     information, alignment and structure
>d2zjrl1 c.55.4.1 (L:8-111) Ribosomal protein L18 (L18p) {Deinococcus radiodurans [TaxId: 1299]} Length = 104 Back     information, alignment and structure
>d1vqon1 c.55.4.1 (N:1-186) Ribosomal protein L18 (L18p) {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 186 Back     information, alignment and structure

Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch

IdentityAlignment graphLength Definition Probability
Target120 50S ribosomal protein L18 [Candidatus Liberibacter asia
d2gycm1113 Ribosomal protein L18 (L18p) {Escherichia coli [TaxId: 100.0
d1ovya_97 Ribosomal protein L18 (L18p) {Bacillus stearothermophil 100.0
d2zjrl1104 Ribosomal protein L18 (L18p) {Deinococcus radiodurans [ 100.0
d2j01s186 Ribosomal protein L18 (L18p) {Thermus thermophilus [Tax 100.0
d1vqon1186 Ribosomal protein L18 (L18p) {Archaeon Haloarcula maris 100.0
d2uubk1119 Ribosomal protein S11 {Thermus thermophilus [TaxId: 274 96.89
d2qalk1117 Ribosomal protein S11 {Escherichia coli [TaxId: 562]} 96.04
>d2gycm1 c.55.4.1 (M:3-115) Ribosomal protein L18 (L18p) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein L18 (L18p)
species: Escherichia coli [TaxId: 562]
Probab=100.00  E-value=7e-44  Score=278.24  Aligned_cols=113  Identities=42%  Similarity=0.631  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEEEEEEECCCCEEEEEEEECCCHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             79999989987768750578788249999638709999996279759999850210000013468667899999999999
Q gi|254780245|r    4 KKKVLARRISRIRRHLKSVSRGRLRLSVCRSSKHIYGQIIDDSIGHTLVSASSLNEPLRSSLKTGANIVAATAVGNLLVE   83 (120)
Q Consensus         4 k~~~~~kR~~R~R~k~k~~~~~~pRL~V~rSnkhiyAQiIdd~~~~tl~saST~~k~~~~~~~~~~ni~aA~~vG~~ia~   83 (120)
                      |+..+.+|+.|+|+++++..  .|||+|||||+|||||||||.+++|||++||++++++..++..+|+++|+.||++||+
T Consensus         1 k~~~r~rR~~R~R~ki~~~~--~pRL~V~rSnkhiyaQiIdd~~~~tl~saST~~k~~~~~~~~~~n~~aA~~vG~~la~   78 (113)
T d2gycm1           1 KKSARIRRATRARRKLQELG--ATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAE   78 (113)
T ss_dssp             CCCCHHHHTTCSCSTTTTTT--CCCCBEEECSSCEEEEEEETTTTEEEEEEETTGGGGTSCCSCSSSHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHCCCC--CCEEEEEEECCCEEEEEEECCCCCEEEEEEEHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf             90888999999999862689--9759999817817999998469917887410356665432777532899999999999


Q ss_pred             HHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             99977997999838986312259999999996587
Q gi|254780245|r   84 RAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGV  118 (120)
Q Consensus        84 r~~~~gI~~v~FDR~g~~yHGrvka~ad~~R~~Gl  118 (120)
                      +++++||++|+|||+||+|||||+||||++||+||
T Consensus        79 ra~~~gI~~vvfDR~g~~YhGrVka~ad~aRe~Gl  113 (113)
T d2gycm1          79 RALEKGIKDVSFDRSGFQYHGRVQALADAAREAGL  113 (113)
T ss_dssp             HHHHHTCCCCCCBCCSCCSSSHHHHHHHHHHHHTC
T ss_pred             HHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCC
T ss_conf             99987999999879998641499999999997489



>d1ovya_ c.55.4.1 (A:) Ribosomal protein L18 (L18p) {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2zjrl1 c.55.4.1 (L:8-111) Ribosomal protein L18 (L18p) {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d2j01s1 c.55.4.1 (S:23-108) Ribosomal protein L18 (L18p) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1vqon1 c.55.4.1 (N:1-186) Ribosomal protein L18 (L18p) {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d2uubk1 c.55.4.1 (K:11-129) Ribosomal protein S11 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2qalk1 c.55.4.1 (K:12-128) Ribosomal protein S11 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure

Homologous Domains in MMDB70 Database Detected by RPS-BLAST

IdentityAlignment graphLength Definition E-value
Target 120 50S ribosomal protein L18 [Candidatus Liberibacter
3i1n_O_117 (O:) 50S ribosomal protein L18; ribosome structure 2e-24
1ovy_A_120 (A:) 50S ribosomal protein L18; ribosome; NMR {Geo 4e-24
1vq8_N_187 (N:) 50S ribosomal protein L18P; ribosome 50S, pro 1e-22
3bbo_Q_161 (Q:) Ribosomal protein L18; large ribosomal subuni 1e-22
2j01_S_112 (S:) 50S ribosomal protein L18; ribosome, tRNA, pa 1e-21
2zjr_L_23-11492 (L:23-114) 50S ribosomal protein L18; ribosome, la 2e-21
3jyw_E_ 237 (E:) 60S ribosomal protein L5; eukaryotic ribosome 3e-20
2zkr_n_ 297 (n:) 60S ribosomal protein L5; protein-RNA complex 0.003
>3i1n_O (O:) 50S ribosomal protein L18; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1p85_M 1p86_M 1vs8_O 2aw4_O 2awb_O 1vs6_O 2i2v_O 2j28_O 2i2t_O* 2qao_O* 2qba_O* 2qbc_O* 2qbe_O 2qbg_O 2qbi_O* 2qbk_O* 2qov_O 2qox_O 2qoz_O* 2qp1_O* ...Length = 117 Back     alignment and structure
 Score =  105 bits (263), Expect = 2e-24
 Identities = 46/117 (39%), Positives = 69/117 (58%), Gaps = 4/117 (3%)

Query: 8   LARRISRIRRHLKSVSR----GRLRLSVCRSSKHIYGQIIDDSIGHTLVSASSLNEPLRS 63
           + ++ +RIRR  ++  +    G  RL V R+ +HIY Q+I  +    LV+AS++ + +  
Sbjct: 1   MDKKSARIRRATRARRKLQELGATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAE 60

Query: 64  SLKTGANIVAATAVGNLLVERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGVSF 120
            LK   N  AA AVG  + ERA++ G+K V FDR    Y GR+ ALADA R+ G+ F
Sbjct: 61  QLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF 117


>1ovy_A (A:) 50S ribosomal protein L18; ribosome; NMR {Geobacillus stearothermophilus}Length = 120 Back     alignment and structure
>1vq8_N (N:) 50S ribosomal protein L18P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui}Length = 187 Back     alignment and structure
>3bbo_Q (Q:) Ribosomal protein L18; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Vitis vinifera}Length = 161 Back     alignment and structure
>2j01_S (S:) 50S ribosomal protein L18; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus}Length = 112 Back     alignment and structure
>2zjr_L (L:23-114) 50S ribosomal protein L18; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans}Length = 92 Back     alignment and structure
>3jyw_E (E:) 60S ribosomal protein L5; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_ELength = 237 Back     alignment and structure
>2zkr_n (n:) 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}Length = 297 Back     alignment and structure

Homologous Domains in MMDB70 Database Detected by HHsearch

IdentityAlignment graphLength Definition Probability
Target120 50S ribosomal protein L18 [Candidatus Liberibacter asia
3i1n_O_117 50S ribosomal protein L18; ribosome structure, pro 100.0
1ovy_A_120 50S ribosomal protein L18; ribosome; NMR {Geobacil 100.0
3bbo_Q_161 Ribosomal protein L18; large ribosomal subunit, sp 100.0
2j01_S_112 50S ribosomal protein L18; ribosome, tRNA, paromom 100.0
2zjr_L_23-11492 50S ribosomal protein L18; ribosome, large ribosom 99.98
1vq8_N_187 50S ribosomal protein L18P; ribosome 50S, protein- 99.97
3jyw_E_ 237 60S ribosomal protein L5; eukaryotic ribosome, RAC 99.95
2zkr_n_ 297 60S ribosomal protein L5; protein-RNA complex, 60S 99.44
2vqe_K_129 30S ribosomal protein S11, 30S ribosomal protein S 97.17
2zkq_k_151 40S ribosomal protein S14E; protein-RNA complex, 4 97.09
3i1m_K_129 30S ribosomal protein S11; ribosome structure, pro 97.06
1s1h_K_136 RP59A, 40S ribosomal protein S14-A; 80S ribosome, 97.05
3bbn_K_140 Ribosomal protein S11; small ribosomal subunit, sp 96.3
>3i1n_O (O:) 50S ribosomal protein L18; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1p85_M 1p86_M 1vs8_O 2aw4_O 2awb_O 1vs6_O 2i2v_O 2j28_O 2i2t_O* 2qao_O* 2qba_O* 2qbc_O* 2qbe_O 2qbg_O 2qbi_O* 2qbk_O* 2qov_O 2qox_O 2qoz_O* 2qp1_O* ... Back     alignment and structure
Probab=100.00  E-value=3.2e-38  Score=247.05  Aligned_cols=117  Identities=43%  Similarity=0.645  Sum_probs=113.3

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCEEEEEEECCCCEEEEEEEECCCHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf             88799999899877687505787882499996387099999962797599998502100000134686678999999999
Q gi|254780245|r    2 ATKKKVLARRISRIRRHLKSVSRGRLRLSVCRSSKHIYGQIIDDSIGHTLVSASSLNEPLRSSLKTGANIVAATAVGNLL   81 (120)
Q Consensus         2 ~~k~~~~~kR~~R~R~k~k~~~~~~pRL~V~rSnkhiyAQiIdd~~~~tl~saST~~k~~~~~~~~~~ni~aA~~vG~~i   81 (120)
                      |+++..+.+|+.|+++++.+.  .+|||+||+||+|||||||||.+++||||+||.|++++..+.+++|++||+.+|++|
T Consensus         1 ~~r~~~r~~R~~r~~~k~~~~--~~pRl~V~~Snk~i~aqiid~~~~~~l~sast~e~~~~~~~~~~~n~~Aa~~vG~~l   78 (117)
T 3i1n_O            1 MDKKSARIRRATRARRKLQEL--GATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAV   78 (117)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHT--CCCEEEEEECSSCEEEEEECTTSSCEEEEEESSSSHHHHTCSSSSSTHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHCCC--CCCEEEEEECCCCEEEEEEECCCCCEEEEEEHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf             982689999999999987268--997599997188279999977988336642014676664327787768999999999


Q ss_pred             HHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf             999997799799983898631225999999999658789
Q gi|254780245|r   82 VERAVKVGVKSVYFDRGKHLYCGRIAALADAVRKGGVSF  120 (120)
Q Consensus        82 a~r~~~~gI~~v~FDR~g~~yHGrvka~ad~~R~~Gl~F  120 (120)
                      |++++++||++|+||||||+|||||+||+|++||+||+|
T Consensus        79 a~r~~~~gi~~v~~Drg~~~y~grv~a~~~~~r~~Gl~f  117 (117)
T 3i1n_O           79 AERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF  117 (117)
T ss_dssp             HHHHHHTTCCCCEEECTTSCTTSTTHHHHHHHHTTTCCC
T ss_pred             HHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf             999998799989976999753579999999999828889



>1ovy_A (A:) 50S ribosomal protein L18; ribosome; NMR {Geobacillus stearothermophilus} Back     alignment and structure
>3bbo_Q (Q:) Ribosomal protein L18; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Vitis vinifera} Back     alignment and structure
>2j01_S (S:) 50S ribosomal protein L18; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} Back     alignment and structure
>2zjr_L (L:23-114) 50S ribosomal protein L18; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} Back     alignment and structure
>1vq8_N (N:) 50S ribosomal protein L18P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} Back     alignment and structure
>3jyw_E (E:) 60S ribosomal protein L5; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_E Back     alignment and structure
>2zkr_n (n:) 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>2vqe_K (K:) 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} Back     alignment and structure
>2zkq_k (k:) 40S ribosomal protein S14E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>3i1m_K (K:) 30S ribosomal protein S11; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_K* 3e1a_C 3e1c_C 1vs5_K 3i1o_K 3i1q_K 3i1s_K 3i1z_K 3i21_K 2qal_K* 1p6g_K 1p87_K 2aw7_K 2avy_K 2i2u_K 2i2p_K* 2qan_K* 2qb9_K* 2qbb_K* 2qbd_K ... Back     alignment and structure
>1s1h_K (K:) RP59A, 40S ribosomal protein S14-A; 80S ribosome, 40S ribosomal subunit, EEF2, tRNA translocation, sordarin, cryo-EM; 11.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3bbn_K (K:) Ribosomal protein S11; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Back     alignment and structure