254780316
phenylalanyl-tRNA synthetase subunit beta
GeneID in NCBI database: | 8209301 | Locus tag: | CLIBASIA_01005 |
Protein GI in NCBI database: | 254780316 | Protein Accession: | YP_003064729.1 |
Gene range: | -(207009, 209426) | Protein Length: | 805aa |
Gene description: | phenylalanyl-tRNA synthetase subunit beta | ||
COG prediction: | [R] EMAP domain | ||
KEGG prediction: | pheT; phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20); K01890 phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] | ||
SEED prediction: | Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) | ||
Pathway involved in KEGG: | Aminoacyl-tRNA biosynthesis [PATH:las00970] | ||
Subsystem involved in SEED: | tRNA aminoacylation, Phe | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 805 | phenylalanyl-tRNA synthetase subunit beta [Candidatus L | |||
315122260 | 807 | phenylalanyl-tRNA synthetase subunit beta [Candidatus L | 1 | 0.0 | |
227824129 | 808 | phenylalanyl-tRNA synthetase subunit beta [Sinorhizobiu | 1 | 0.0 | |
307301185 | 808 | phenylalanyl-tRNA synthetase, beta subunit [Sinorhizobi | 1 | 0.0 | |
222084533 | 807 | phenylalanyl-tRNA synthetase [Agrobacterium radiobacter | 1 | 0.0 | |
15964039 | 808 | phenylalanyl-tRNA synthetase subunit beta [Sinorhizobiu | 1 | 0.0 | |
150398673 | 808 | phenylalanyl-tRNA synthetase subunit beta [Sinorhizobiu | 1 | 0.0 | |
15887609 | 807 | phenylalanyl-tRNA synthetase subunit beta [Agrobacteriu | 1 | 0.0 | |
241207217 | 807 | phenylalanyl-tRNA synthetase subunit beta [Rhizobium le | 1 | 0.0 | |
209551839 | 810 | phenylalanyl-tRNA synthetase subunit beta [Rhizobium le | 1 | 0.0 | |
222147174 | 807 | phenylalanyl-tRNA synthetase subunit beta [Agrobacteriu | 1 | 0.0 |
>gi|315122260|ref|YP_004062749.1| phenylalanyl-tRNA synthetase subunit beta [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 807 | Back alignment and organism information |
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Score = 1211 bits (3134), Expect = 0.0, Method: Compositional matrix adjust. Identities = 587/807 (72%), Positives = 693/807 (85%), Gaps = 2/807 (0%) Query: 1 MKFTLSWLKDHLDTDVSLEKICDTLTSIGLEVEKVDNREALSPFTIVKVLSVERNPD-LD 59 MKFTLSWLKDHLDTD SL +ICD LTSIGLEVE VD R++L+PF IV++LSV+R+ + + Sbjct: 1 MKFTLSWLKDHLDTDASLGEICDNLTSIGLEVEGVDTRDSLAPFRIVEILSVQRHSNSQN 60 Query: 60 CAILRIDTGKHQEIQVVCGAPNVRVGLLGVWAPPGSCIPENNMIVNVRKIRGIESTGMMC 119 ++L+ID G+ + +QVVCGAPNVRVGLLG+WAPPGSCIPEN+M +NVRKIRGIES GMMC Sbjct: 61 LSVLQIDVGEQKTVQVVCGAPNVRVGLLGIWAPPGSCIPENHMTINVRKIRGIESMGMMC 120 Query: 120 SEKELMLSDDSASIMELPIDAPVGGRLSDYLELSDPIIDVSLTPNRSDCIGVRGIALDLV 179 SEKELMLSD I+ELPIDAPVGGR SDY LSDPIID++LTPNRSDC GVRGIALDLV Sbjct: 121 SEKELMLSDSCVGIIELPIDAPVGGRFSDYFGLSDPIIDIALTPNRSDCSGVRGIALDLV 180 Query: 180 AAGLGKLKEINISCPLSSESIPLEIKFDLDDSSLCKGFAMCCVKGVRNNVAPNWMRQRLK 239 AAGLGKLKEI+ SS SIP+EI+FDLDD+ LCKGFAMCCV+GVRN +P WMRQRL+ Sbjct: 181 AAGLGKLKEIDAPVFSSSGSIPVEIQFDLDDARLCKGFAMCCVRGVRNTSSPKWMRQRLE 240 Query: 240 AVGLRSISALVDITNYVSLDRGYPSHVFDASRISDVLTVRRACSGEKILALDNQEYDLSP 299 AVGLR ISALVDITNY+++DRGYPSHVFD+S+IS +T+RRA SGEK +AL+++EY+LSP Sbjct: 241 AVGLRPISALVDITNYIAIDRGYPSHVFDSSKISGDITIRRARSGEKFIALNDKEYELSP 300 Query: 300 DNVVIASDGRIQSIAGIIGGKHAGCDDNTTDVLVEVALWDPINIARSGKNLGIITDSRYR 359 DNVV+ASD I+SIAGIIGGK+A CDD+TTDVLVEVALWD +NIA SG LGI TDSRYR Sbjct: 301 DNVVVASDNCIESIAGIIGGKNACCDDDTTDVLVEVALWDSLNIAHSGHVLGISTDSRYR 360 Query: 360 FERGVDLQGMIPVLKHIVSLILSLCGGTASDICIARNITYKPRKIVFMNSEVKRLSGIDV 419 FERGVDLQGM+P+LK+ VSLILSLCGG ASDI + ++ YKPR I F+NSEVKRL+GI+V Sbjct: 361 FERGVDLQGMLPILKYEVSLILSLCGGMASDIFVGKHEIYKPRTIEFINSEVKRLAGIEV 420 Query: 420 PIEDSLRILERLGFSVIGEYDKFEVSVPSWRQDVEEKADLVEEILRIYGVDQIKSEPLPL 479 P+++SL IL LGF VI + + VSVPSWRQDVEEKADLVEEILRIYGVD+IK EPL L Sbjct: 421 PLKESLCILRNLGFDVIEKKGVWTVSVPSWRQDVEEKADLVEEILRIYGVDKIKGEPLSL 480 Query: 480 TQVEDKRNLSLQQSRTRYVKRVLASRAMMEVVNWSFISKEQSVLFGGGQRELEILNPISA 539 T + KRNLSLQQSR RY KRVLASR+MME++ WSFI K+QSVLFGGGQ ELE+LNPIS Sbjct: 481 THLGKKRNLSLQQSRIRYSKRVLASRSMMELITWSFIPKKQSVLFGGGQPELELLNPISV 540 Query: 540 DMSNMRTSLLPGLLKATGRNVDRAIADFAIFEVSHVYENDTPEGQKYMAAGIRKGSSGIE 599 +MSNMRTSLLPGLLKA R++DRAI D AIFEVSHVYEND PEGQK MA+GIRKGSS +E Sbjct: 541 EMSNMRTSLLPGLLKAVSRSIDRAIMDLAIFEVSHVYENDRPEGQKCMASGIRKGSSCME 600 Query: 600 GSGRLWSDKSEERCRFVDLFDAKADALSVIEPFVSLDSLRFESGAPSWYHPGRSGIIKTS 659 GSGR WS++S ++CRFVD+FDAKADAL+VIE FVS+DSL+ ESGAPSWYHP RSG IK + Sbjct: 601 GSGRFWSEQSVKKCRFVDVFDAKADALAVIEAFVSIDSLQIESGAPSWYHPKRSGTIKVN 660 Query: 660 AEIVLGYFGEFHPNILDFFGLSNPICGFEVYLDSIPISQKKRTKTKKVVHLSSLHPVKRD 719 +VLGYFGEFHP ILDFFGLSNPIC FEVYLD IPI + K +KK+++L S HP++RD Sbjct: 661 NNVVLGYFGEFHPEILDFFGLSNPICCFEVYLDYIPIPKNKPIASKKIINLPSFHPIRRD 720 Query: 720 LAFIVDQHIPAGTLVNIIKNVDR-LIDDVTVFDVFQGKSLGEGKKSVAIQVLIQPLKDTF 778 AFI+D+ +P TL+NI++ +DR LI DV VFDVF+GKSLGE KKS+A++VLIQPLK+ F Sbjct: 721 FAFIIDKTVPTATLINIVRRIDRQLIVDVRVFDVFEGKSLGEDKKSIALEVLIQPLKEAF 780 Query: 779 RDDDIRILMDRIVENVVKKTNAVLRSS 805 D+D+R L +RI+ENV KK+NAVLRSS Sbjct: 781 CDEDVRALTERIIENVTKKSNAVLRSS 807 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|227824129|ref|YP_002828102.1| phenylalanyl-tRNA synthetase subunit beta [Sinorhizobium fredii NGR234] Length = 808 | Back alignment and organism information |
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>gi|307301185|ref|ZP_07580947.1| phenylalanyl-tRNA synthetase, beta subunit [Sinorhizobium meliloti BL225C] Length = 808 | Back alignment and organism information |
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>gi|222084533|ref|YP_002543062.1| phenylalanyl-tRNA synthetase [Agrobacterium radiobacter K84] Length = 807 | Back alignment and organism information |
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>gi|15964039|ref|NP_384392.1| phenylalanyl-tRNA synthetase subunit beta [Sinorhizobium meliloti 1021] Length = 808 | Back alignment and organism information |
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>gi|150398673|ref|YP_001329140.1| phenylalanyl-tRNA synthetase subunit beta [Sinorhizobium medicae WSM419] Length = 808 | Back alignment and organism information |
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>gi|15887609|ref|NP_353290.1| phenylalanyl-tRNA synthetase subunit beta [Agrobacterium tumefaciens str. C58] Length = 807 | Back alignment and organism information |
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>gi|241207217|ref|YP_002978313.1| phenylalanyl-tRNA synthetase subunit beta [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 807 | Back alignment and organism information |
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>gi|209551839|ref|YP_002283756.1| phenylalanyl-tRNA synthetase subunit beta [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 810 | Back alignment and organism information |
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>gi|222147174|ref|YP_002548131.1| phenylalanyl-tRNA synthetase subunit beta [Agrobacterium vitis S4] Length = 807 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 805 | phenylalanyl-tRNA synthetase subunit beta [Candidatus L | ||
PRK00629 | 791 | PRK00629, pheT, phenylalanyl-tRNA synthetase subunit be | 0.0 | |
TIGR00472 | 798 | TIGR00472, pheT_bact, phenylalanyl-tRNA synthetase, bet | 0.0 | |
CHL00192 | 704 | CHL00192, syfB, phenylalanyl-tRNA synthetase beta chain | 8e-66 | |
COG0072 | 650 | COG0072, PheT, Phenylalanyl-tRNA synthetase beta subuni | 1e-157 | |
pfam03483 | 174 | pfam03483, B3_4, B3/4 domain | 3e-54 | |
smart00873 | 174 | smart00873, B3_4, B3/4 domain | 2e-44 | |
cd00769 | 198 | cd00769, PheRS_beta_core, Phenylalanyl-tRNA synthetase | 7e-39 | |
PRK09616 | 552 | PRK09616, pheT, phenylalanyl-tRNA synthetase subunit be | 6e-31 | |
KOG2472 | 578 | KOG2472, KOG2472, KOG2472, Phenylalanyl-tRNA synthetase | 2e-16 | |
cd02796 | 103 | cd02796, tRNA_bind_bactPheRS, tRNA-binding-domain-conta | 4e-25 | |
COG0073 | 123 | COG0073, ARC1, EMAP domain [General function prediction | 3e-17 | |
cd02153 | 99 | cd02153, tRNA_bindingDomain, The tRNA binding domain is | 3e-14 | |
pfam01588 | 94 | pfam01588, tRNA_bind, Putative tRNA binding domain | 1e-09 | |
pfam03147 | 94 | pfam03147, FDX-ACB, Ferredoxin-fold anticodon binding d | 3e-22 | |
TIGR00471 | 551 | TIGR00471, pheT_arch, phenylalanyl-tRNA synthetase, bet | 3e-17 | |
smart00874 | 71 | smart00874, B5, tRNA synthetase B5 domain | 1e-16 | |
pfam03484 | 69 | pfam03484, B5, tRNA synthetase B5 domain | 9e-16 | |
PLN02265 | 597 | PLN02265, PLN02265, probable phenylalanyl-tRNA syntheta | 2e-13 |
>gnl|CDD|179078 PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed | Back alignment and domain information |
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>gnl|CDD|161895 TIGR00472, pheT_bact, phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial | Back alignment and domain information |
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>gnl|CDD|177091 CHL00192, syfB, phenylalanyl-tRNA synthetase beta chain; Provisional | Back alignment and domain information |
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>gnl|CDD|30421 COG0072, PheT, Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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>gnl|CDD|146236 pfam03483, B3_4, B3/4 domain | Back alignment and domain information |
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>gnl|CDD|129106 smart00873, B3_4, B3/4 domain | Back alignment and domain information |
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>gnl|CDD|29814 cd00769, PheRS_beta_core, Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain | Back alignment and domain information |
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>gnl|CDD|181993 PRK09616, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed | Back alignment and domain information |
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>gnl|CDD|37683 KOG2472, KOG2472, KOG2472, Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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>gnl|CDD|48399 cd02796, tRNA_bind_bactPheRS, tRNA-binding-domain-containing prokaryotic phenylalanly tRNA synthetase (PheRS) beta chain | Back alignment and domain information |
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>gnl|CDD|30422 COG0073, ARC1, EMAP domain [General function prediction only] | Back alignment and domain information |
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>gnl|CDD|48398 cd02153, tRNA_bindingDomain, The tRNA binding domain is also known as the Myf domain in literature | Back alignment and domain information |
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>gnl|CDD|110582 pfam01588, tRNA_bind, Putative tRNA binding domain | Back alignment and domain information |
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>gnl|CDD|145994 pfam03147, FDX-ACB, Ferredoxin-fold anticodon binding domain | Back alignment and domain information |
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>gnl|CDD|161894 TIGR00471, pheT_arch, phenylalanyl-tRNA synthetase, beta subunit | Back alignment and domain information |
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>gnl|CDD|129107 smart00874, B5, tRNA synthetase B5 domain | Back alignment and domain information |
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>gnl|CDD|146237 pfam03484, B5, tRNA synthetase B5 domain | Back alignment and domain information |
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>gnl|CDD|177906 PLN02265, PLN02265, probable phenylalanyl-tRNA synthetase beta chain | Back alignment and domain information |
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Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 805 | phenylalanyl-tRNA synthetase subunit beta [Candidatus L | ||
PRK00629 | 786 | pheT phenylalanyl-tRNA synthetase subunit beta; Reviewe | 100.0 | |
TIGR00472 | 848 | pheT_bact phenylalanyl-tRNA synthetase, beta subunit; I | 100.0 | |
CHL00192 | 702 | syfB phenylalanyl-tRNA synthetase beta chain; Provision | 100.0 | |
COG0072 | 650 | PheT Phenylalanyl-tRNA synthetase beta subunit [Transla | 100.0 | |
PRK09616 | 546 | pheT phenylalanyl-tRNA synthetase subunit beta; Reviewe | 100.0 | |
TIGR00471 | 605 | pheT_arch phenylalanyl-tRNA synthetase, beta subunit; I | 100.0 | |
KOG2472 | 578 | consensus | 100.0 | |
pfam03483 | 174 | B3_4 B3/4 domain. This domain is found in tRNA syntheta | 100.0 | |
smart00873 | 174 | B3_4 B3/4 domain. This domain is found in tRNA syntheta | 100.0 | |
COG3382 | 229 | Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS- | 99.33 | |
cd00769 | 198 | PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) be | 100.0 | |
PRK04172 | 501 | pheS phenylalanyl-tRNA synthetase subunit alpha; Provis | 99.06 | |
pfam01409 | 243 | tRNA-synt_2d tRNA synthetases class II core domain (F). | 99.02 | |
PTZ00326 | 505 | phenylalanyl-tRNA synthetase; Provisional | 98.95 | |
COG0016 | 335 | PheS Phenylalanyl-tRNA synthetase alpha subunit [Transl | 98.78 | |
cd00496 | 218 | PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) a | 98.63 | |
PRK00488 | 338 | pheS phenylalanyl-tRNA synthetase subunit alpha; Valida | 98.35 | |
PRK09537 | 420 | pylS pyrolysyl-tRNA synthetase; Reviewed | 97.7 | |
cd00768 | 211 | class_II_aaRS-like_core Class II tRNA amino-acyl synthe | 97.49 | |
TIGR02367 | 453 | PylS pyrrolysyl-tRNA synthetase; InterPro: IPR012739 Py | 97.27 | |
cd02796 | 103 | tRNA_bind_bactPheRS tRNA-binding-domain-containing prok | 99.98 | |
COG0073 | 123 | ARC1 EMAP domain [General function prediction only] | 99.95 | |
cd02153 | 99 | tRNA_bindingDomain The tRNA binding domain is also know | 99.91 | |
pfam01588 | 94 | tRNA_bind Putative tRNA binding domain. This domain is | 99.84 | |
cd02799 | 105 | tRNA_bind_EMAP-II_like tRNA-binding-domain-containing E | 99.68 | |
cd02800 | 105 | tRNA_bind_EcMetRS_like tRNA-binding-domain-containing E | 99.39 | |
cd02798 | 107 | tRNA_bind_CsaA tRNA-binding-domain-containing CsaA-like | 99.21 | |
PRK10089 | 110 | hypothetical protein; Provisional | 99.21 | |
COG2517 | 219 | Predicted RNA-binding protein containing a C-terminal E | 98.98 | |
KOG2241 | 255 | consensus | 98.79 | |
TIGR00399 | 149 | metG_C_term methionyl-tRNA synthetase, beta subunit; In | 98.7 | |
pfam09513 | 356 | consensus | 98.51 | |
PHA02142 | 366 | putative RNA ligase | 98.47 | |
TIGR02222 | 107 | chap_CsaA export-related chaperone CsaA; InterPro: IPR0 | 92.71 | |
pfam03147 | 94 | FDX-ACB Ferredoxin-fold anticodon binding domain. This | 99.92 | |
TIGR00469 | 460 | pheS_mito phenylalanyl-tRNA synthetase; InterPro: IPR00 | 99.79 | |
KOG2783 | 436 | consensus | 99.79 | |
PRK08655 | 441 | prephenate dehydrogenase; Provisional | 98.51 | |
pfam03484 | 69 | B5 tRNA synthetase B5 domain. This domain is found in p | 99.71 | |
smart00874 | 71 | B5 tRNA synthetase B5 domain. This domain is found in p | 99.66 | |
PRK12267 | 644 | methionyl-tRNA synthetase; Reviewed | 99.34 | |
PRK00133 | 666 | metG methionyl-tRNA synthetase; Reviewed | 99.32 | |
PRK06253 | 527 | O-phosphoseryl-tRNA synthetase; Reviewed | 98.93 | |
TIGR00470 | 558 | sepS O-phosphoseryl-tRNA(Cys) synthetase; InterPro: IPR | 97.48 | |
TIGR02306 | 374 | RNA_lig_DRB0094 RNA ligase, DRB0094 family; InterPro: I | 97.87 | |
COG4937 | 171 | Predicted regulatory domain of prephenate dehydrogenase | 97.75 | |
COG2024 | 536 | Phenylalanyl-tRNA synthetase alpha subunit (archaeal ty | 97.55 | |
TIGR00468 | 362 | pheS phenylalanyl-tRNA synthetase, alpha subunit; Inter | 97.54 | |
KOG2784 | 483 | consensus | 97.37 | |
cd00773 | 261 | HisRS-like_core Class II Histidinyl-tRNA synthetase (Hi | 96.44 | |
pfam00587 | 170 | tRNA-synt_2b tRNA synthetase class II core domain (G, H | 93.01 | |
cd00779 | 255 | ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II | 92.15 | |
PRK09616 | 546 | pheT phenylalanyl-tRNA synthetase subunit beta; Reviewe | 94.75 | |
PRK12292 | 388 | hisZ ATP phosphoribosyltransferase regulatory subunit; | 94.21 | |
PRK12421 | 391 | ATP phosphoribosyltransferase regulatory subunit; Provi | 91.45 | |
CHL00192 | 702 | syfB phenylalanyl-tRNA synthetase beta chain; Provision | 91.13 | |
CHL00201 | 424 | syh histidine-tRNA synthetase; Provisional | 90.13 | |
PRK12295 | 373 | hisZ ATP phosphoribosyltransferase regulatory subunit; | 93.91 | |
PRK00037 | 417 | hisS histidyl-tRNA synthetase; Reviewed | 92.93 |
>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed | Back alignment and domain information |
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>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit; InterPro: IPR004532 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
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>CHL00192 syfB phenylalanyl-tRNA synthetase beta chain; Provisional | Back alignment and domain information |
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>COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed | Back alignment and domain information |
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>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit; InterPro: IPR004531 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
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>KOG2472 consensus | Back alignment and domain information |
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>pfam03483 B3_4 B3/4 domain | Back alignment and domain information |
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>smart00873 B3_4 B3/4 domain | Back alignment and domain information |
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>COG3382 Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only] | Back alignment and domain information |
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>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain | Back alignment and domain information |
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>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional | Back alignment and domain information |
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>pfam01409 tRNA-synt_2d tRNA synthetases class II core domain (F) | Back alignment and domain information |
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>PTZ00326 phenylalanyl-tRNA synthetase; Provisional | Back alignment and domain information |
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>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain | Back alignment and domain information |
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>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated | Back alignment and domain information |
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>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
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>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain | Back alignment and domain information |
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>TIGR02367 PylS pyrrolysyl-tRNA synthetase; InterPro: IPR012739 PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine | Back alignment and domain information |
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>cd02796 tRNA_bind_bactPheRS tRNA-binding-domain-containing prokaryotic phenylalanly tRNA synthetase (PheRS) beta chain | Back alignment and domain information |
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>COG0073 ARC1 EMAP domain [General function prediction only] | Back alignment and domain information |
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>cd02153 tRNA_bindingDomain The tRNA binding domain is also known as the Myf domain in literature | Back alignment and domain information |
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>pfam01588 tRNA_bind Putative tRNA binding domain | Back alignment and domain information |
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>cd02799 tRNA_bind_EMAP-II_like tRNA-binding-domain-containing EMAP2-like proteins | Back alignment and domain information |
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>cd02800 tRNA_bind_EcMetRS_like tRNA-binding-domain-containing Escherichia coli methionyl-tRNA synthetase (EcMetRS)-like proteins | Back alignment and domain information |
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>cd02798 tRNA_bind_CsaA tRNA-binding-domain-containing CsaA-like proteins | Back alignment and domain information |
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>PRK10089 hypothetical protein; Provisional | Back alignment and domain information |
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>COG2517 Predicted RNA-binding protein containing a C-terminal EMAP domain [General function prediction only] | Back alignment and domain information |
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>KOG2241 consensus | Back alignment and domain information |
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>TIGR00399 metG_C_term methionyl-tRNA synthetase, beta subunit; InterPro: IPR004495 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
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>pfam09513 consensus | Back alignment and domain information |
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>PHA02142 putative RNA ligase | Back alignment and domain information |
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>TIGR02222 chap_CsaA export-related chaperone CsaA; InterPro: IPR008231 The CsaA protein is required for SecA-mediated translocation of a subset of proteins , | Back alignment and domain information |
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>pfam03147 FDX-ACB Ferredoxin-fold anticodon binding domain | Back alignment and domain information |
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>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase; InterPro: IPR004530 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
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>KOG2783 consensus | Back alignment and domain information |
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>PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
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>pfam03484 B5 tRNA synthetase B5 domain | Back alignment and domain information |
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>smart00874 B5 tRNA synthetase B5 domain | Back alignment and domain information |
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>PRK12267 methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
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>PRK00133 metG methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
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>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed | Back alignment and domain information |
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>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase; InterPro: IPR005246 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
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>TIGR02306 RNA_lig_DRB0094 RNA ligase, DRB0094 family; InterPro: IPR012646 RNA repair, though not as well characterised as DNA repair, is an important component of many biological systems | Back alignment and domain information |
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>COG4937 Predicted regulatory domain of prephenate dehydrogenase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit; InterPro: IPR004529 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
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>KOG2784 consensus | Back alignment and domain information |
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>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain | Back alignment and domain information |
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>pfam00587 tRNA-synt_2b tRNA synthetase class II core domain (G, H, P, S and T) | Back alignment and domain information |
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>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
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>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed | Back alignment and domain information |
---|
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
---|
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
---|
>CHL00192 syfB phenylalanyl-tRNA synthetase beta chain; Provisional | Back alignment and domain information |
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>CHL00201 syh histidine-tRNA synthetase; Provisional | Back alignment and domain information |
---|
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
---|
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed | Back alignment and domain information |
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Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
Identity | Alignment graph | Length | Definition | E-value |
Target | 805 | phenylalanyl-tRNA synthetase subunit beta [Candidatus L | ||
3pco_B | 795 | Crystal Structure Of E. Coli Phenylalanine-Trna Syn | 1e-173 | |
2rhs_B | 800 | Phers From Staphylococcus Haemolyticus- Rational Pr | 1e-161 | |
2rhq_B | 795 | Phers From Staphylococcus Haemolyticus- Rational Pr | 1e-154 | |
1pys_B | 785 | Phenylalanyl-Trna Synthetase From Thermus Thermophi | 1e-123 | |
2iy5_B | 785 | Phenylalanyl-Trna Synthetase From Thermus Thermophi | 1e-123 | |
3bu2_A | 199 | Crystal Structure Of A Trna-Binding Protein From St | 1e-24 | |
1ntg_A | 172 | Crystal Structure Of The Emap Ii-Like Cytokine Rele | 2e-09 | |
2e8g_A | 241 | The Structure Of Protein From P. Horikoshii At 1.7 | 8e-09 | |
1mkh_A | 107 | C-Terminal Domain Of Methionyl-Trna Synthetase From | 5e-06 | |
1euj_A | 166 | A Novel Anti-Tumor Cytokine Contains A Rna-Binding | 2e-05 | |
1e7z_A | 174 | Crystal Structure Of The Emap2RNA BINDING DOMAIN OF | 2e-05 | |
1rqg_A | 722 | Methionyl-Trna Synthetase From Pyrococcus Abyssi Le | 2e-05 | |
1fl0_A | 171 | Crystal Structure Of The Emap2RNA-Binding Domain Of | 2e-05 | |
1pxf_A | 111 | Crystal Structure Of Trbp111: A Structure Specific | 9e-05 | |
3ers_X | 118 | Crystal Structure Of E. Coli Trbp111 Length = 118 | 1e-04 | |
3l4g_B | 589 | Crystal Structure Of Homo Sapiens Cytoplasmic Pheny | 9e-17 | |
3cmq_A | 415 | Crystal Structure Of Human Mitochondrial Phenylalan | 1e-15 | |
3ica_A | 213 | The Crystal Structure Of The Beta Subunit Of A Phen | 1e-11 | |
3ig2_A | 213 | The Crystal Structure Of A Putative Phenylalanyl-Tr | 5e-10 |
gi|325053952|pdb|3PCO|B Chain B, Crystal Structure Of E. Coli Phenylalanine-Trna Synthetase Complexed With Phenylalanine And Amp Length = 795 | Back alignment and structure |
Score = 613 bits (1581), Expect = e-173, Method: Composition-based stats. Identities = 246/809 (30%), Positives = 409/809 (50%), Gaps = 21/809 (2%) Query: 1 MKFTLSWLKDHLDTDVSLEKICDTLTSIGLEVEKVDN-REALSPFTIVKVLSVERNPDLD 59 MKF+ WL++ ++ + + + + +T GLEV+ V+ + + +V+ ++P+ D Sbjct: 1 MKFSELWLREWVNPAIDSDALANQITMAGLEVDGVEPVAGSFHGVVVGEVVECAQHPNAD 60 Query: 60 -CAILRIDTGKHQEIQVVCGAPNVRVGLLGVWAPPGSCIPENNMIVNVRKIRGIESTGMM 118 + +++ G + + +VCGAPN R GL A G+ +P + + K+RG S GM+ Sbjct: 61 KLRVTKVNVGGDRLLDIVCGAPNCRQGLRVAVATIGAVLP-GDFKIKAAKLRGEPSEGML 119 Query: 119 CSEKELMLSDDSASIMELPIDAPVGGRLSDYLELSDPIIDVSLTPNRSDCIGVRGIALDL 178 CS EL +SDD + I+ELP DAP+G + +YL+L D I++S+TPNR+DC+G+ G+A D+ Sbjct: 120 CSFSELGISDDHSGIIELPADAPIGTDIREYLKLDDNTIEISVTPNRADCLGIIGVARDV 179 Query: 179 VAAGLGKLKEINISCPLSSESIPLEIKFDLDDSSLCKGFAMCCVKGVRNN-VAPNWMRQR 237 L + I +I + ++ C + VKG+ P WM+++ Sbjct: 180 AVLNQLPLVQPEI--VPVGATIDDTLPITVEAPEACPRYLGRVVKGINVKAPTPLWMKEK 237 Query: 238 LKAVGLRSISALVDITNYVSLDRGYPSHVFDASRISDVLTVRRACSGEKILALDNQEYDL 297 L+ G+RSI A+VD+TNYV L+ G P H FD RI + VR A GE ++ LD E L Sbjct: 238 LRRCGIRSIDAVVDVTNYVLLELGQPMHAFDKDRIEGGIVVRMAKEGETLVLLDGTEAKL 297 Query: 298 SPDNVVIASDGRIQSIAGIIGGKHAGCDDNTTDVLVEVALWDPINIARSGKNLGIITDSR 357 + D +VIA + ++ GI GG+H+G +D T +VL+E A + P++I + G+ TD+ Sbjct: 298 NADTLVIADHNKALAMGGIFGGEHSGVNDETQNVLLECAFFSPLSITGRARRHGLHTDAS 357 Query: 358 YRFERGVDLQGMIPVLKHIVSLILSLCGGTASDICIARNITYKPRKIVF--MNSEVKRLS 415 +R+ERGVD ++ L++ +CGG A + N P++ S++ RL Sbjct: 358 HRYERGVDPALQHKAMERATRLLIDICGGEAGPVIDITNEATLPKRATITLRRSKLDRLI 417 Query: 416 GIDVPIEDSLRILERLGFSVIGEYDKFEVSVPSWRQDVEEKADLVEEILRIYGVDQIKSE 475 G + E IL RLG V D+++ PSWR D+E + DLVEE+ R+YG + I E Sbjct: 418 GHHIADEQVTDILRRLGCEVTEGKDEWQAVAPSWRFDMEIEEDLVEEVARVYGYNNIPDE 477 Query: 476 PLPLTQVEDKRNLSLQQSRTRYVKRVLASRAMMEVVNWSFISKEQSVLFGGGQRELEILN 535 P+ + + + VK +L + EV+ +SF+ + + G L + + Sbjct: 478 PVQASLIM--GTHREADLSLKRVKTLLNDKGYQEVITYSFVDPKVQQMIHPGVEALLLPS 535 Query: 536 PISADMSNMRTSLLPGLLKATGRNVDRAIADFAIFEVSHVYENDTPEGQKYMAAGIRKGS 595 PIS +MS MR SL GLL N +R IFE + DT + Sbjct: 536 PISVEMSAMRLSLWTGLLATVVYNQNRQQNRVRIFESGLRFVPDTQAP----LGIRQDLM 591 Query: 596 SGIEGSGRLWSDKSEERCRFVDLFDAKADALSVIEPFVSLDSLRFESGAPSWYHPGRSGI 655 G + + VD +D K D SV++ L+ + F + A HPG+S Sbjct: 592 LAGVICGNRYEEHWNLAKETVDFYDLKGDLESVLDLTGKLNEVEFRAEANPALHPGQSAA 651 Query: 656 IKTSAEIVLGYFGEFHPNILDFFGLSNPICGFEVYLDSIPISQKKRTKTKKVVHLSSLHP 715 I E + G+ G HP + L+ FE+ + + + +S Sbjct: 652 IYLKGERI-GFVGVVHPELERKLDLNGRTLVFELEWNKL-----ADRVVPQAREISRFPA 705 Query: 716 VKRDLAFIVDQHIPAGTLVNIIKN-VDRLIDDVTVFDVFQGKSLGEGKKSVAIQVLIQPL 774 +RD+A +V +++PA +++ K + V +FDV++GK + EG KS+AI +++Q Sbjct: 706 NRRDIAVVVAENVPAADILSECKKVGVNQVVGVNLFDVYRGKGVAEGYKSLAISLILQDT 765 Query: 775 KDTFRDDDIRILMDRIVENVVKKTNAVLR 803 T +++I + + VE + ++ A LR Sbjct: 766 SRTLEEEEIAATVAKCVEALKERFQASLR 794 |
>gi|160286089|pdb|2RHS|B Chain B, Phers From Staphylococcus Haemolyticus- Rational Protein Engineering And Inhibitor Studies Length = 800 | Back alignment and structure |
>gi|160286086|pdb|2RHQ|B Chain B, Phers From Staphylococcus Haemolyticus- Rational Protein Engineering And Inhibitor Studies Length = 795 | Back alignment and structure |
gi|2781286|pdb|1PYS|B Chain B, Phenylalanyl-Trna Synthetase From Thermus Thermophilus Length = 785 | Back alignment and structure |
>gi|116668186|pdb|2IY5|B Chain B, Phenylalanyl-Trna Synthetase From Thermus Thermophilus Complexed With Trna And A Phenylalanyl-Adenylate Analog Length = 785 | Back alignment and structure |
>gi|166007369|pdb|3BU2|A Chain A, Crystal Structure Of A Trna-Binding Protein From Staphylococcus Saprophyticus Subsp. Saprophyticus. Northeast Structural Genomics Consortium Target Syr77 Length = 199 | Back alignment and structure |
>gi|31615708|pdb|1NTG|A Chain A, Crystal Structure Of The Emap Ii-Like Cytokine Released From Human Tyrosyl-Trna Synthetase Length = 172 | Back alignment and structure |
gi|166007018|pdb|2E8G|A Chain A, The Structure Of Protein From P. Horikoshii At 1.7 Angstrom Resolution Length = 241 | Back alignment and structure |
>gi|28373694|pdb|1MKH|A Chain A, C-Terminal Domain Of Methionyl-Trna Synthetase From Pyrococcus Abyssi Length = 107 | Back alignment and structure |
>gi|10120516|pdb|1EUJ|A Chain A, A Novel Anti-Tumor Cytokine Contains A Rna-Binding Motif Present In Aminoacyl-Trna Synthetases Length = 166 | Back alignment and structure |
>gi|12084782|pdb|1E7Z|A Chain A, Crystal Structure Of The Emap2RNA BINDING DOMAIN OF THE P43 Protein From Human Aminoacyl-Trna Synthetase Complex Length = 174 | Back alignment and structure |
gi|49258778|pdb|1RQG|A Chain A, Methionyl-Trna Synthetase From Pyrococcus Abyssi Length = 722 | Back alignment and structure |
>gi|12084657|pdb|1FL0|A Chain A, Crystal Structure Of The Emap2RNA-Binding Domain Of The P43 Protein From Human Aminoacyl-Trna Synthetase Complex Length = 171 | Back alignment and structure |
>gi|215794768|pdb|3ERS|X Chain X, Crystal Structure Of E. Coli Trbp111 Length = 118 | Back alignment and structure |
>gi|290790148|pdb|3L4G|B Chain B, Crystal Structure Of Homo Sapiens Cytoplasmic Phenylalanyl-T Synthetase Length = 589 | Back alignment and structure |
>gi|193506716|pdb|3CMQ|A Chain A, Crystal Structure Of Human Mitochondrial Phenylalanine Trna Synthetase Length = 415 | Back alignment and structure |
>gi|254839707|pdb|3ICA|A Chain A, The Crystal Structure Of The Beta Subunit Of A Phenylalanyl- Trna Synthetase From Porphyromonas Gingivalis W83 Length = 213 | Back alignment and structure |
>gi|257097716|pdb|3IG2|A Chain A, The Crystal Structure Of A Putative Phenylalanyl-Trna Synthetase (Phers) Beta Chain Domain From Bacteroides Fragilis To 2.1a Length = 213 | Back alignment and structure |
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 805 | phenylalanyl-tRNA synthetase subunit beta [Candidatus L | ||
2rhq_B | 795 | Phenylalanyl-tRNA synthetase beta chain; heterotetramer | 1e-135 | |
1b7y_B | 785 | Phers, protein (phenylalanyl-tRNA synthetase); enzyme, | 1e-133 | |
3l4g_B | 589 | Phenylalanyl-tRNA synthetase beta chain; aminoacylation | 1e-87 | |
2odr_C | 701 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthe | 6e-61 | |
2cxi_A | 348 | Phenylalanyl-tRNA synthetase beta chain; aminoacyl-tRNA | 4e-49 | |
3cmq_A | 415 | Phenylalanyl-tRNA synthetase, mitochondrial; classii aa | 3e-37 | |
3ica_A | 213 | Phenylalanyl-tRNA synthetase beta chain; APC61692.1, be | 1e-32 | |
3ig2_A | 213 | Phenylalanyl-tRNA synthetase beta chain; phers, PSI, MC | 4e-21 | |
3bu2_A | 199 | Putative tRNA-binding protein; structural genomics, PSI | 1e-21 | |
1mkh_A | 107 | Metrs;, C-terminal domain of methionyl-tRNA synthetase; | 9e-10 | |
2nzh_A | 113 | Protein CSAA; beta barrel, oligonucleotide/oligosacchar | 3e-08 | |
2cwp_A | 112 | Metrs related protein; structural genomics, riken struc | 1e-07 | |
1pxf_A | 111 | Hypothetical protein YGJH; oligonucleotide-oligosacchar | 1e-06 | |
1gd7_A | 109 | CSAA protein; oligonucleotide-binding fold, functional | 2e-06 | |
1pyb_A | 111 | Methionyl-tRNA synthetase beta subunit; oligonucleotide | 2e-05 | |
3g48_A | 112 | Chaperone CSAA; structural genomics, niaid structural g | 0.002 | |
1rqg_A | 722 | Methionyl-tRNA synthetase; translation, dimerization, l | 0.004 | |
2e8g_A | 241 | Hypothetical protein PH0536; oligonucleotide/oligosacch | 9e-19 | |
1ntg_A | 172 | Tyrrs, tyrosyl-tRNA synthetase; beta barrel, ligase; 2. | 7e-11 | |
1fl0_A | 171 | Endothelial-monocyte activating polypeptide II; RNA-bin | 2e-16 |
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B* Length = 795 | Back alignment and structure |
---|
Score = 478 bits (1231), Expect = e-135 Identities = 222/813 (27%), Positives = 398/813 (48%), Gaps = 29/813 (3%) Query: 1 MKFTLSWLKDHLDTDVSLEKICDTLTSIGLEVEKVDNR-EALSPFTIVKVLSVERNPDLD 59 M + WLKD++D V +E + + +T G+EV+ + + + + + + S E+ Sbjct: 1 MLISNEWLKDYVDAGVKVEDLAERITRTGIEVDNMIDYSKDIKNLVVGYIQSKEKGSG-- 58 Query: 60 CAILRIDTGKHQEIQVVCGAPNVRVGLLGVWAPPGSCIPENNMIVNVRKIRGIESTGMMC 119 I ++D G+ + +Q+VCGAPNV G + A G +P + + K+RG S GM+C Sbjct: 59 -NICQVDIGEEEPVQIVCGAPNVDAGQHVIVAKVGGRLP-GGIKIKRAKLRGERSEGMIC 116 Query: 120 SEKELMLSDDSAS------IMELPIDAPVGGRLSDYLELSDPIIDVSLTPNRSDCIGVRG 173 S +E+ +S + I P + G L L+D +++ LTPNR+D + + G Sbjct: 117 SLQEIGISSNVVPKAYENGIFVFPTEVEPGTDALTALYLNDQVMEFDLTPNRADALSMVG 176 Query: 174 IALDLVAAGLGKLKEINISCPLSSESIPLEIKFDLDDSSLCKGFAMCCVKGVRNNVAPNW 233 A ++ A ++ + +SES E+ +D+ ++ VK V +P W Sbjct: 177 TAYEVAALYQTEMTKPETQSNETSESATNELSVTIDNPEKVPYYSARVVKNVSIEPSPIW 236 Query: 234 MRQRLKAVGLRSISALVDITNYVSLDRGYPSHVFDASRISDVL-TVRRACSGEKILALDN 292 ++ RL G+R I+ +VDI+NYV L+ G P H+FD I VR+A E + LDN Sbjct: 237 VQARLIKAGIRPINNVVDISNYVLLEYGQPLHMFDQDHIGSKEIVVRQAKDEETMTTLDN 296 Query: 293 QEYDLSPDNVVIASDGRIQSIAGIIGGKHAGCDDNTTDVLVEVALWDPINIARSGKNLGI 352 E L ++VI++ ++AG++GG + + TT+V++E A++DP++I + + L + Sbjct: 297 NERKLVDTDIVISNGQEPIALAGVMGGDFSEVTEQTTNVVIEGAIFDPVSIRHTSRRLNL 356 Query: 353 ITDSRYRFERGVDLQGMIPVLKHIVSLILSLCGGTASDICIAR-NITYKPRKIVFMNSEV 411 +++ RFE+G+ + + + L+ L G ++ ++ I +V Sbjct: 357 RSEASSRFEKGIATEFVDEAVDRACYLLQELASGEVLQDRVSSGDLGSFVTPIDITAEKV 416 Query: 412 KRLSGIDVPIEDSLRILERLGFSVIGEYDKFEVSVPSWRQDVEEKADLVEEILRIYGVDQ 471 + G ++ ++ I +LGF + + V+VPS R+D+ K DL+EE+ RIYG D+ Sbjct: 417 NKTIGFNLSNDEIQSIFRQLGFETTLKGETLTVNVPSRRKDITIKEDLIEEVARIYGYDE 476 Query: 472 IKSEPLPLTQVEDKRNLSLQQSRTRYVKRVLASRAMMEVVNWSFISKEQSVLFGGGQREL 531 I S LP+ L+ +Q +TR +K L + + + +S +SK+ + F +R Sbjct: 477 IPSS-LPVFGEVTSGELTDRQHKTRTLKETLEGAGLNQAITYSLVSKDHAKDFALQERPT 535 Query: 532 -EILNPISADMSNMRTSLLPGLLKATGRNVDRAIADFAIFEVSHVYENDTPEGQKYMAAG 590 +L P+S + +R SLLP L++AT NV R D ++E+ V+ + Sbjct: 536 ISLLMPMSEAHATLRQSLLPHLIEATAYNVARKNKDVRLYEIGRVFFGNGEGELPDEVEY 595 Query: 591 IRKGSSGIEGSGRLWSDKSEERCRFVDLFDAKADALSVIEPFVSLDSLRFESGAPSWYHP 650 + SGI + + ++ +D F AK V E +++G HP Sbjct: 596 L----SGILTGEYVVNAWQGKKEE-IDFFIAKGVVDRVAEKLN--LEFSYKAGKIEGLHP 648 Query: 651 GRSGIIKTSAEIVLGYFGEFHPNILDFFGLSNPICGFEVYLDSIPISQKKRTKTKKVVHL 710 GR+ I+ + + G+ GE HP + L FE+ D++ +++ Sbjct: 649 GRTAIVSLEGQDI-GFIGELHPQVAADNDL-KRTYVFELNYDAMMQVAVGYINYEQI--- 703 Query: 711 SSLHPVKRDLAFIVDQHIPAGTLVNIIKNVDR-LIDDVTVFDVFQGKSLGEGKKSVAIQV 769 V RD+A V+ +P+ L II N ++ VFDV++G+ L +GKKSVAI++ Sbjct: 704 PKFPGVTRDIALEVNHDVPSSELKQIIHNNGEDILQSTLVFDVYEGEHLEKGKKSVAIRL 763 Query: 770 LIQPLKDTFRDDDIRILMDRIVENVVKKTNAVL 802 +DT D+ + + D+I+E ++ A + Sbjct: 764 NYLDTEDTLTDERVSKIHDKILEA-LQAEGATI 795 |
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 2iy5_B* Length = 785 | Back alignment and structure |
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>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} Length = 589 | Back alignment and structure |
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>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2} Length = 701 | Back alignment and structure |
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>2cxi_A Phenylalanyl-tRNA synthetase beta chain; aminoacyl-tRNA synthetase, ligase, structural genomics, NPPSFA; HET: MSE; 1.94A {Pyrococcus horikoshii OT3} Length = 348 | Back alignment and structure |
---|
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* Length = 415 | Back alignment and structure |
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>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, beta subunit, structural genomics, PSI-2, protein structure initiative; HET: TAM; 2.44A {Porphyromonas gingivalis} Length = 213 | Back alignment and structure |
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>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 2.09A {Bacteroides fragilis} Length = 213 | Back alignment and structure |
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>3bu2_A Putative tRNA-binding protein; structural genomics, PSI-2, protein structure initiative; 2.70A {Staphylococcus saprophyticus subsp} Length = 199 | Back alignment and structure |
---|
>1mkh_A Metrs;, C-terminal domain of methionyl-tRNA synthetase; beta barrel, dimerization domain, ligase; 2.01A {Pyrococcus abyssi} SCOP: b.40.4.4 Length = 107 | Back alignment and structure |
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>2nzh_A Protein CSAA; beta barrel, oligonucleotide/oligosaccharide binding fold, homodimer, chaperone; 1.90A {Bacillus subtilis} PDB: 2nzo_A Length = 113 | Back alignment and structure |
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>2cwp_A Metrs related protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.10A {Pyrococcus horikoshii} Length = 112 | Back alignment and structure |
---|
>1gd7_A CSAA protein; oligonucleotide-binding fold, functional dimer, hydrophobic cavity, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: b.40.4.4 Length = 109 | Back alignment and structure |
---|
>1pyb_A Methionyl-tRNA synthetase beta subunit; oligonucleotide, oligosaccharide-binding fold, OB-fold, beta-barrel, RNA binding protein; 2.50A {Aquifex aeolicus} SCOP: b.40.4.4 Length = 111 | Back alignment and structure |
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>3g48_A Chaperone CSAA; structural genomics, niaid structural genomic centers for infectious diseases; 1.50A {Bacillus anthracis} Length = 112 | Back alignment and structure |
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>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Length = 722 | Back alignment and structure |
---|
>2e8g_A Hypothetical protein PH0536; oligonucleotide/oligosaccharide-binding fold, alpha-helices bundle, structural genomics, NPPSFA; 1.70A {Pyrococcus horikoshii} Length = 241 | Back alignment and structure |
---|
>1ntg_A Tyrrs, tyrosyl-tRNA synthetase; beta barrel, ligase; 2.21A {Homo sapiens} SCOP: b.40.4.4 Length = 172 | Back alignment and structure |
---|
>1fl0_A Endothelial-monocyte activating polypeptide II; RNA-binding domain, OB-fold, tRNA synthetase complex, RNA binding protein; 1.50A {Homo sapiens} SCOP: b.40.4.4 PDB: 1e7z_A 1euj_A Length = 171 | Back alignment and structure |
---|
Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 805 | phenylalanyl-tRNA synthetase subunit beta [Candidatus L | ||
2rhq_B | 795 | Phenylalanyl-tRNA synthetase beta chain; heterotetramer | 100.0 | |
1b7y_B | 785 | Phers, protein (phenylalanyl-tRNA synthetase); enzyme, | 100.0 | |
3l4g_B | 589 | Phenylalanyl-tRNA synthetase beta chain; aminoacylation | 100.0 | |
2cxi_A | 348 | Phenylalanyl-tRNA synthetase beta chain; aminoacyl-tRNA | 100.0 | |
2odr_A | 665 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthe | 100.0 | |
2odr_D | 685 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthe | 100.0 | |
2odr_C | 701 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthe | 100.0 | |
2odr_B | 648 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthe | 100.0 | |
3cmq_A | 415 | Phenylalanyl-tRNA synthetase, mitochondrial; classii aa | 100.0 | |
3ica_A | 213 | Phenylalanyl-tRNA synthetase beta chain; APC61692.1, be | 100.0 | |
3ig2_A | 213 | Phenylalanyl-tRNA synthetase beta chain; phers, PSI, MC | 100.0 | |
2zin_A | 291 | Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 99.52 | |
3l4g_A | 508 | Phenylalanyl-tRNA synthetase alpha chain; aminoacylatio | 99.14 | |
2rhq_A | 294 | Phenylalanyl-tRNA synthetase alpha chain; heterotetrame | 98.8 | |
1b7y_A | 350 | Phers, protein (phenylalanyl-tRNA synthetase); enzyme, | 98.53 | |
3dsq_A | 288 | Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA s | 98.53 | |
3bu2_A | 199 | Putative tRNA-binding protein; structural genomics, PSI | 100.0 | |
2e8g_A | 241 | Hypothetical protein PH0536; oligonucleotide/oligosacch | 99.85 | |
2nzh_A | 113 | Protein CSAA; beta barrel, oligonucleotide/oligosacchar | 99.72 | |
2cwp_A | 112 | Metrs related protein; structural genomics, riken struc | 99.72 | |
1ntg_A | 172 | Tyrrs, tyrosyl-tRNA synthetase; beta barrel, ligase; 2. | 99.89 | |
1mkh_A | 107 | Metrs;, C-terminal domain of methionyl-tRNA synthetase; | 99.81 | |
1fl0_A | 171 | Endothelial-monocyte activating polypeptide II; RNA-bin | 99.71 | |
1pyb_A | 111 | Methionyl-tRNA synthetase beta subunit; oligonucleotide | 99.71 | |
1pxf_A | 111 | Hypothetical protein YGJH; oligonucleotide-oligosacchar | 99.65 | |
1gd7_A | 109 | CSAA protein; oligonucleotide-binding fold, functional | 99.45 | |
3g48_A | 112 | Chaperone CSAA; structural genomics, niaid structural g | 99.45 | |
2q2h_A | 131 | AGR_C_4014P, secretion chaperone, phage-display derived | 98.96 | |
2q2i_A | 116 | AGR_C_4014P, secretion chaperone; beta barrel, OB fold, | 98.89 | |
2du7_A | 549 | O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase | 99.18 | |
2du3_A | 534 | O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase | 99.12 | |
1rqg_A | 722 | Methionyl-tRNA synthetase; translation, dimerization, l | 98.98 | |
3l4g_B | 589 | Phenylalanyl-tRNA synthetase beta chain; aminoacylation | 97.24 | |
2cxi_A | 348 | Phenylalanyl-tRNA synthetase beta chain; aminoacyl-tRNA | 97.07 | |
3a2k_A | 464 | TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligas | 93.99 | |
3hj7_A | 142 | TRNA(Ile)-lysidine synthase; helix-turn-helix, pseudo-k | 96.39 | |
3od1_A | 400 | ATP phosphoribosyltransferase regulatory subunit; struc | 95.4 | |
3lc0_A | 456 | Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA s | 93.84 | |
1z7m_A | 344 | ATP phosphoribosyltransferase regulatory subunit; ATP-P | 90.69 | |
1htt_A | 423 | Histidyl-tRNA synthetase; complex (tRNA synthetase/His- | 90.52 | |
3net_A | 465 | Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, li | 93.71 | |
1qe0_A | 420 | Histidyl-tRNA synthetase; class II tRNA synthetase, bet | 92.42 | |
1wu7_A | 434 | Histidyl-tRNA synthetase; ligase, structural genomics, | 92.12 |
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B* | Back alignment and structure |
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Probab=100.00 E-value=0 Score=1714.77 Aligned_cols=781 Identities=28% Similarity=0.480 Sum_probs=723.2 Q ss_pred CCCCHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEEECCC-CCCCEEEEEEEEEEECCCCCCCEEEEECCCCCEEEEECCC Q ss_conf 977867998847899988999999874586042111246-5687489999997565799870899975999579897548 Q gi|254780316|r 1 MKFTLSWLKDHLDTDVSLEKICDTLTSIGLEVEKVDNRE-ALSPFTIVKVLSVERNPDLDCAILRIDTGKHQEIQVVCGA 79 (805) Q Consensus 1 M~is~~WL~~~v~~~~~~~~l~~~lt~~G~EVe~i~~~~-~~~~vvvg~v~~~~~hP~adl~v~~Vd~g~~~~~~IvcgA 79 (805) |+||++||+||+|+++++++|+++||++|+|||+++..+ .+++||||+|++++|||| ++|+||+|+++.+|||||| T Consensus 1 M~is~~WL~e~v~~~~~~~~l~~~lt~~G~EVE~~~~~~~~~~~vvvg~v~~~~~hp~---~vc~V~~g~~~~~~IvcgA 77 (795) T 2rhq_B 1 MLISNEWLKDYVDAGVKVEDLAERITRTGIEVDNMIDYSKDIKNLVVGYIQSKEKGSG---NICQVDIGEEEPVQIVCGA 77 (795) T ss_dssp CEEEHHHHTTTBCCSSCHHHHHHHHHHTTCEEEEEEETTTTCEEEEEEEEEEEECSSS---CEEEEECSSSSCEEEECCC T ss_pred CCCCHHHHHHHHCCCCCHHHHHHHHHHCEEEEEEEEECCCCCCCEEEEEEECCCCCCC---CEEEEECCCCCEEEEECCC T ss_conf 9478899998719998999999998656081127884576779889999935658999---6799986899568898699 Q ss_pred CCCCCCCEEEEECCCCEECCCCEEEEEEHHCCCCCCCHHHHHHHCCCCCC------CCCEEEECCCCCCCCCHHHHHCCC Q ss_conf 34558978989668779258983983312058650545411887699854------775078168888884558870888 Q gi|254780316|r 80 PNVRVGLLGVWAPPGSCIPENNMIVNVRKIRGIESTGMMCSEKELMLSDD------SASIMELPIDAPVGGRLSDYLELS 153 (805) Q Consensus 80 ~Nv~~g~~V~~A~~Ga~lp~g~~~i~~~~irGv~S~GMlCS~~ELgl~~~------~~gI~~l~~~~~~G~~~~~~l~l~ 153 (805) |||++|++||||+|||+|| |+++||++||||++|+|||||++||||+++ |+|||+||+++++|+++.+|++++ T Consensus 78 ~Nv~~g~~V~vA~~Ga~lp-~~~~i~~~klrGv~S~GMlcS~~ELGl~~~~~~~~~~~gI~~l~~~~~~G~~~~~~l~l~ 156 (795) T 2rhq_B 78 PNVDAGQHVIVAKVGGRLP-GGIKIKRAKLRGERSEGMICSLQEIGISSNVVPKAYENGIFVFPTEVEPGTDALTALYLN 156 (795) T ss_dssp TTCCTTCEEEEEEEEEEET-TTEECCCEEETTEEECSEECCSGGGTCCGGGSCHHHHTSCCBCSSCCCTTSBHHHHTTCS T ss_pred CCCCCCCEEEEECCCCEEC-CCCEEEEEEECCCCCCCEECCHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHCCC T ss_conf 7236899999978698947-997896301378326732569878699866676667784598789888996889971899 Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHCCCCCCCCCCCCHH Q ss_conf 55999870878576655578999877641156666554566777777741589840731112332011232245566377 Q gi|254780316|r 154 DPIIDVSLTPNRSDCIGVRGIALDLVAAGLGKLKEINISCPLSSESIPLEIKFDLDDSSLCKGFAMCCVKGVRNNVAPNW 233 (805) Q Consensus 154 D~i~ei~iTpNR~D~ls~~GiARElaa~~~~~l~~~~~~~~~~~~~~~~~i~v~i~~~~~c~~y~~~~i~~v~~~~SP~w 233 (805) |++|||++||||||||||+|+||||||+++.+++.|..............+.+.+++++.||+|.+++|+||++++||+| T Consensus 157 D~iieieitpNR~D~lS~~GiARelaa~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~Sp~~ 236 (795) T 2rhq_B 157 DQVMEFDLTPNRADALSMVGTAYEVAALYQTEMTKPETQSNETSESATNELSVTIDNPEKVPYYSARVVKNVSIEPSPIW 236 (795) T ss_dssp CEEEEEECCGGGGGGSSHHHHHHHHHHHHTCCBCCCCCCCCCCSCBGGGTCEEEESCTTTCSEEEEEEEECCCCCCCCHH T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCCCCCCCHH T ss_conf 83899856898488765888999999874676567632233324456765057630645586465799626677899499 Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCC-CEEEEEECCCCCCHHHHHHHCCCCCCCCEEEECCCCCCC Q ss_conf 8788886401321039999989998608700000102233-326886235543114554201124543200002567631 Q gi|254780316|r 234 MRQRLKAVGLRSISALVDITNYVSLDRGYPSHVFDASRIS-DVLTVRRACSGEKILALDNQEYDLSPDNVVIASDGRIQS 312 (805) Q Consensus 234 l~~rL~~~Gir~inniVDitNyvmle~GqPlHafD~dki~-~~i~vr~a~~~E~~~~Ld~~e~~L~~~~lvI~d~~~~ia 312 (805) +|+||+++|+||+||+||||||+|+++|||+||||+||+. +.+.||.|+++|+|.+||+++|.|+++++||+|+++|+| T Consensus 237 l~~rL~~~Gir~in~iVDitNyvmle~GqPlhafD~~~i~~~~i~vr~a~~~e~~~~Ld~~~~~l~~~~lvI~d~~~~ia 316 (795) T 2rhq_B 237 VQARLIKAGIRPINNVVDISNYVLLEYGQPLHMFDQDHIGSKEIVVRQAKDEETMTTLDNNERKLVDTDIVISNGQEPIA 316 (795) T ss_dssp HHHHHHHTTCCCCCHHHHHHHHHHHHHSCCCEEEEGGGSSSSEEEEEECCTTCEEEBTTSCEEECCTTCEEEESSSSEEE T ss_pred HHHHHHHCCCCCCCCCCCCHHHCHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCEEECCCCCCCCCCCEEEEECCCCCEE T ss_conf 99999986997501014742102133289641045541247752898436665301115530114553058954997355 Q ss_pred CHHHCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCC-CCC Q ss_conf 0011135531201367269999715787888778876165401554413455301358899988875212334555-652 Q gi|254780316|r 313 IAGIIGGKHAGCDDNTTDVLVEVALWDPINIARSGKNLGIITDSRYRFERGVDLQGMIPVLKHIVSLILSLCGGTA-SDI 391 (805) Q Consensus 313 laGImGg~~s~v~~~T~~illEsA~F~p~~Ir~tar~l~l~TdaS~RfERgvd~~~~~~al~r~~~Li~e~~gg~~-~~~ 391 (805) |||||||.+|+|+++|||||||||+|||..||+|+|+++++||||+|||||+||..+..++.|+++|+.++|||++ ... T Consensus 317 laGImgg~~s~V~~~T~~iliE~a~fdp~~Ir~tsr~l~l~tdas~Rfergvd~~~~~~a~~~~~~li~~~~~~~~~~~~ 396 (795) T 2rhq_B 317 LAGVMGGDFSEVTEQTTNVVIEGAIFDPVSIRHTSRRLNLRSEASSRFEKGIATEFVDEAVDRACYLLQELASGEVLQDR 396 (795) T ss_dssp ETTTEEBSSSBCCTTCCEEEEEEEECCHHHHHHHHHHTTCCCHHHHHHHTCCCGGGHHHHHHHHHHHHHHHSCCEECBCC T ss_pred ECCEECCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCHHHEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCE T ss_conf 35556675556776650344010346889999998874013201111036777410799999999987754266423330 Q ss_pred EEEEECCCCCCCEECCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCC Q ss_conf 58741355431000043113333113458789999999840222103456236640345433440256767676535233 Q gi|254780316|r 392 CIARNITYKPRKIVFMNSEVKRLSGIDVPIEDSLRILERLGFSVIGEYDKFEVSVPSWRQDVEEKADLVEEILRIYGVDQ 471 (805) Q Consensus 392 ~~~~~~~~~~~~I~l~~~~i~~ilG~~i~~~ei~~iL~~Lgf~v~~~~~~~~V~vPs~R~DI~~e~DLiEEIaRiyGYdn 471 (805) .+.+..+..+++|.++.++++++||++++.+++.++|++|||+++.+++.|.|+||+||+||.+++||||||+|+||||| T Consensus 397 ~~~~~~~~~~~~I~l~~~~i~~ilG~~i~~~~i~~iL~~Lg~~v~~~~~~~~V~vP~~R~DI~~e~DliEEIaRiyGydn 476 (795) T 2rhq_B 397 VSSGDLGSFVTPIDITAEKVNKTIGFNLSNDEIQSIFRQLGFETTLKGETLTVNVPSRRKDITIKEDLIEEVARIYGYDE 476 (795) T ss_dssp EEEECCCCSEEEEEEEHHHHHHHHTCCCCHHHHHHHHHHTTCEEEEETTEEEEEEETTCTTCCSHHHHHHHHHHHHCTTT T ss_pred EECCCCCCCCEEEEECHHHHHHHCCCCCCHHHHHHHHHHCCCEEEECCCEEEEECCCCCCCCCCCCCHHHHHHHHCCCCC T ss_conf 21144434321465038999765298751366999998558879962870899899854534766537776774437300 Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH-HHHCCCCCCCCCCCCCCCCHHHC Q ss_conf 46676554434576789988954678988787787740232100482576552000-00000246776432101512211 Q gi|254780316|r 472 IKSEPLPLTQVEDKRNLSLQQSRTRYVKRVLASRAMMEVVNWSFISKEQSVLFGGG-QRELEILNPISADMSNMRTSLLP 550 (805) Q Consensus 472 Ip~~~l~~~~~~~~~~~~~~~~~~~~ir~~L~~~Gf~Ev~tysl~s~~~~~~~~~~-~~~i~l~NPlS~e~s~lR~SLlp 550 (805) ||++++.... .........+...+++|+.|+++||+|++||||++++....++.. .+.++|+||+|+|+++||+||+| T Consensus 477 ip~~~p~~~~-~~~~~~~~~~~~~~~lr~~L~~~Gf~Ev~tysf~s~~~~~~~~~~~~~~v~l~NPls~e~s~lR~SLlp 555 (795) T 2rhq_B 477 IPSSLPVFGE-VTSGELTDRQHKTRTLKETLEGAGLNQAITYSLVSKDHAKDFALQERPTISLLMPMSEAHATLRQSLLP 555 (795) T ss_dssp SCCCCCCCSS-CCCCCCCHHHHHHHHHHHHHHHTTCEECCCCSEECTTTTTTTCSSCCCCEECSSCSCTTSSEECSCSHH T ss_pred CCCCCCCHHC-CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHCCCHHHHHHHHHCCCHH T ss_conf 7676862000-245678878988999999998649864345224330021110234654332157213425565065326 Q ss_pred HHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCC---CCEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH Q ss_conf 067764321015861134543024444777544---31000221035431012462023454433331468887531111 Q gi|254780316|r 551 GLLKATGRNVDRAIADFAIFEVSHVYENDTPEG---QKYMAAGIRKGSSGIEGSGRLWSDKSEERCRFVDLFDAKADALS 627 (805) Q Consensus 551 ~LL~~~~~N~~r~~~~i~lFEiG~Vf~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~df~dlKg~v~~ 627 (805) |||+++++|++|+++++++||+|+||.++.... +...++++ ..|......|....+.+|||++||.+++ T Consensus 556 ~LL~~~~~N~~r~~~~~~lFEiG~vf~~~~~~~~~~~~~~l~~~--------~~g~~~~~~~~~~~~~~df~~~Kg~ve~ 627 (795) T 2rhq_B 556 HLIEATAYNVARKNKDVRLYEIGRVFFGNGEGELPDEVEYLSGI--------LTGEYVVNAWQGKKEEIDFFIAKGVVDR 627 (795) T ss_dssp HHHHHHHHHHHTTCCCEEEEEEEEEEECCCTTSCCEEEEEEEEE--------EESEEEEEGGGTEEEECCHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCCCCHHCCCEEEECCCCCCCCCCHHCEEEE--------EECCCCCHHHCCCCCCCCHHHHHHHHHH T ss_conf 67888887774589875510064289647764453101204677--------7156340121267656788999889999 Q ss_pred HHHHCCCCCCEEEECCCCCCCCCCCEEEEEECCEEEEEEEEEECHHHHHHCCCCCCEEEEEEEHHHHHHHHHCCCCCCCC Q ss_conf 11101453330330588656789816999987929999985477899996687997899998787623545202456631 Q gi|254780316|r 628 VIEPFVSLDSLRFESGAPSWYHPGRSGIIKTSAEIVLGYFGEFHPNILDFFGLSNPICGFEVYLDSIPISQKKRTKTKKV 707 (805) Q Consensus 628 ll~~l~~~~~~~~~~~~~~~~hPgrsa~I~~~gk~iiG~iG~ihP~i~~~~~i~~~v~~~EI~ld~L~~~~~~~~~~~~~ 707 (805) ++..++. .+.+.+..+++|||||||.|+++|+.+ |++|+|||.++++|+|+ ++|+|||+|+.|... .....+| T Consensus 628 ll~~l~~--~~~~~~~~~~~~hpgrsA~I~~~~~~I-G~iGelhP~v~~~~~i~-~v~~~Ei~l~~l~~~---~~~~~~~ 700 (795) T 2rhq_B 628 VAEKLNL--EFSYKAGKIEGLHPGRTAIVSLEGQDI-GFIGELHPQVAADNDLK-RTYVFELNYDAMMQV---AVGYINY 700 (795) T ss_dssp HHHHHTC--CCEEEECCCTTEEEEEEEEEEETTEEE-EEEEEECHHHHHHTTCC-SEEEEEEEHHHHTTC---CCCSCCC T ss_pred HHHHHHH--HCEECCCCCCCCCCCCEEEEEECCEEE-EEEEEECHHHHHHCCCC-CEEEEEEEHHHHHHH---HCCCCCC T ss_conf 9998433--122213777667888569999999399-99999999999876999-769999997994420---1157777 Q ss_pred CCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHCC-CCEEEEEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCHHHHHHH Q ss_conf 3689888720018999668879999999997111-003576989876367799884269999998477988899999999 Q gi|254780316|r 708 VHLSSLHPVKRDLAFIVDQHIPAGTLVNIIKNVD-RLIDDVTVFDVFQGKSLGEGKKSVAIQVLIQPLKDTFRDDDIRIL 786 (805) Q Consensus 708 ~~~s~fP~v~RDls~iv~~~v~~~~I~~~i~~~~-~ll~~v~lfDvY~g~~i~~gkkSla~rl~fqs~~kTLtd~EI~~i 786 (805) +++|+||+++|||||++|+++++++|+++|++++ ++|+++++||+|+|+++++||||+||||+|||.+|||||+||+++ T Consensus 701 ~~~s~fP~v~RDls~vv~~~v~~~~i~~~i~~~~~~ll~~v~lfDvY~g~~i~~gkkSla~rl~fqs~~kTLtd~ev~~~ 780 (795) T 2rhq_B 701 EQIPKFPGVTRDIALEVNHDVPSSELKQIIHNNGEDILQSTLVFDVYEGEHLEKGKKSVAIRLNYLDTEDTLTDERVSKI 780 (795) T ss_dssp CCCCSSCCEEEEEECBEETTSCHHHHHHHHHHHCGGGEEEEEEEEEEC-----CCEEEEEEEEEECCSSSCCCHHHHHHH T ss_pred CCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCEEEEEEEEEECCCCCCCHHHHHHH T ss_conf 97899998657899998998959999999985591517187899997899999996699999999999989799999999 Q ss_pred HHHHHHHHHHHHCCEE Q ss_conf 9999999999951198 Q gi|254780316|r 787 MDRIVENVVKKTNAVL 802 (805) Q Consensus 787 ~~~ii~~l~~k~ga~L 802 (805) +++|++.|+++ ||+| T Consensus 781 ~~~ii~~l~~~-Ga~l 795 (795) T 2rhq_B 781 HDKILEALQAE-GATI 795 (795) T ss_dssp HHHHHHHHHHH-TCBC T ss_pred HHHHHHHHHHC-CCCC T ss_conf 99999999975-8899 |
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 2iy5_B* | Back alignment and structure |
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>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} | Back alignment and structure |
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>2cxi_A Phenylalanyl-tRNA synthetase beta chain; aminoacyl-tRNA synthetase, ligase, structural genomics, NPPSFA; HET: MSE; 1.94A {Pyrococcus horikoshii OT3} | Back alignment and structure |
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>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2} | Back alignment and structure |
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>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2} | Back alignment and structure |
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>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2} | Back alignment and structure |
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>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis S2} | Back alignment and structure |
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>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* | Back alignment and structure |
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>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, beta subunit, structural genomics, PSI-2, protein structure initiative; HET: TAM; 2.44A {Porphyromonas gingivalis} | Back alignment and structure |
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>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 2.09A {Bacteroides fragilis} | Back alignment and structure |
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>2zin_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, pyrrolysine, ATP analogue, non-natural amino acid, unnatural amino acid, ATP-binding; HET: ANP LBY; 1.79A {Methanosarcina mazei} PDB: 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* | Back alignment and structure |
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>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} | Back alignment and structure |
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>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A* | Back alignment and structure |
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>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 2aly_A* 2akw_A* 2amc_A* | Back alignment and structure |
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