254780335
colicin V production protein
GeneID in NCBI database: | 8209320 | Locus tag: | CLIBASIA_01100 |
Protein GI in NCBI database: | 254780335 | Protein Accession: | YP_003064748.1 |
Gene range: | +(230614, 231084) | Protein Length: | 156aa |
Gene description: | colicin V production protein | ||
COG prediction: | [R] Uncharacterized membrane protein, required for colicin V production | ||
KEGG prediction: | colicin V production protein; K03558 membrane protein required for colicin V production | ||
SEED prediction: | not defined as a protein in SEED | ||
Pathway involved in KEGG: | not defined | ||
Subsystem involved in KEGG: | not defined | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 156 | colicin V production protein [Candidatus Liberibacter a | |||
315122239 | 158 | colicin V production protein [Candidatus Liberibacter s | 1 | 2e-58 | |
222148122 | 199 | colicin V production protein [Agrobacterium vitis S4] L | 1 | 1e-17 | |
121601989 | 187 | CvpA protein [Bartonella bacilliformis KC583] Length = | 1 | 1e-16 | |
150395952 | 214 | colicin V production protein [Sinorhizobium medicae WSM | 1 | 3e-16 | |
15964878 | 199 | putative colicin V production transmembrane protein [Si | 1 | 5e-16 | |
158422158 | 232 | putative uncharacterized membrane protein [Azorhizobium | 1 | 5e-16 | |
15888419 | 195 | colicin V production protein [Agrobacterium tumefaciens | 1 | 5e-16 | |
325292456 | 195 | colicin V production protein [Agrobacterium sp. H13-3] | 1 | 8e-16 | |
227821450 | 199 | colicin V production protein [Sinorhizobium fredii NGR2 | 1 | 1e-15 | |
222085425 | 203 | colicin V production protein [Agrobacterium radiobacter | 1 | 7e-15 |
>gi|315122239|ref|YP_004062728.1| colicin V production protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 158 | Back alignment and organism information |
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Score = 228 bits (581), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 110/155 (70%), Positives = 131/155 (84%) Query: 1 MGITYFDIFCFGFISISSMLAMARGIFSEMISLTNWIVAAIMTRYLYPMLLERVSEFFKS 60 M ITYFDI CFGFI IS++LAM RGI SEMISLTNWI +AI+TRYLY M+ + SE+F++ Sbjct: 1 MEITYFDIICFGFILISAILAMVRGILSEMISLTNWIFSAIITRYLYLMIFAKGSEYFQN 60 Query: 61 KQVAIIMTIIPLFLIILTVVSILLKIMSTPIRIRSVLLDKILGCAFGGVRGLFLLIITTS 120 KQ+A+I TI+PLFLII T VSILL+I+S PI IRSV LDKILGC FGGVRGLFLL+I T+ Sbjct: 61 KQIALIATIVPLFLIIFTAVSILLRIISKPIYIRSVFLDKILGCLFGGVRGLFLLVIATA 120 Query: 121 CWNLIVHESREPAWIQKSISKKALDRMGTRLQSIV 155 CWNLIV+ES+EP WIQKSISKK D M T+L+ I+ Sbjct: 121 CWNLIVNESKEPEWIQKSISKKIFDDMSTKLKKII 155 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|222148122|ref|YP_002549079.1| colicin V production protein [Agrobacterium vitis S4] Length = 199 | Back alignment and organism information |
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>gi|121601989|ref|YP_988802.1| CvpA protein [Bartonella bacilliformis KC583] Length = 187 | Back alignment and organism information |
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>gi|150395952|ref|YP_001326419.1| colicin V production protein [Sinorhizobium medicae WSM419] Length = 214 | Back alignment and organism information |
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>gi|15964878|ref|NP_385231.1| putative colicin V production transmembrane protein [Sinorhizobium meliloti 1021] Length = 199 | Back alignment and organism information |
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>gi|158422158|ref|YP_001523450.1| putative uncharacterized membrane protein [Azorhizobium caulinodans ORS 571] Length = 232 | Back alignment and organism information |
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>gi|15888419|ref|NP_354100.1| colicin V production protein [Agrobacterium tumefaciens str. C58] Length = 195 | Back alignment and organism information |
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>gi|325292456|ref|YP_004278320.1| colicin V production protein [Agrobacterium sp. H13-3] Length = 195 | Back alignment and organism information |
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>gi|227821450|ref|YP_002825420.1| colicin V production protein [Sinorhizobium fredii NGR234] Length = 199 | Back alignment and organism information |
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>gi|222085425|ref|YP_002543955.1| colicin V production protein [Agrobacterium radiobacter K84] Length = 203 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 156 | colicin V production protein [Candidatus Liberibacter a | ||
COG1286 | 182 | COG1286, CvpA, Uncharacterized membrane protein, requir | 8e-10 | |
pfam02674 | 145 | pfam02674, Colicin_V, Colicin V production protein | 4e-11 |
>gnl|CDD|31477 COG1286, CvpA, Uncharacterized membrane protein, required for colicin V production [General function prediction only] | Back alignment and domain information |
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>gnl|CDD|145693 pfam02674, Colicin_V, Colicin V production protein | Back alignment and domain information |
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Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 156 | colicin V production protein [Candidatus Liberibacter a | ||
PRK10845 | 162 | colicin V production protein; Provisional | 100.0 | |
COG1286 | 182 | CvpA Uncharacterized membrane protein, required for col | 99.97 | |
pfam02674 | 145 | Colicin_V Colicin V production protein. Colicin V produ | 99.97 | |
pfam02674 | 145 | Colicin_V Colicin V production protein. Colicin V produ | 97.12 |
>PRK10845 colicin V production protein; Provisional | Back alignment and domain information |
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>COG1286 CvpA Uncharacterized membrane protein, required for colicin V production [General function prediction only] | Back alignment and domain information |
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>pfam02674 Colicin_V Colicin V production protein | Back alignment and domain information |
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>pfam02674 Colicin_V Colicin V production protein | Back alignment and domain information |
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Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
No homologous structure with e-value below 0.005
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 90.00
Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 90.00
Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
No hit with e-value below 0.005
Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
No hit with probability higher than 90.00