Conserved Domains in CDD Database Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity Alignment graph Length
Definition
E-value
Target 75
hypothetical protein CLIBASIA_01465 [Candidatus Liberib
pfam07896 41
pfam07896, DUF1674, Protein of unknown function (DUF167
2e-12
KOG3245 106
KOG3245, KOG3245, KOG3245, Uncharacterized conserved pr
2e-04
COG5508 84
COG5508, COG5508, Uncharacterized conserved small prote
3e-11
>gnl|CDD|149136 pfam07896, DUF1674, Protein of unknown function (DUF1674)
Back Show alignment and domain information
Score = 66.0 bits (162), Expect = 2e-12
Identities = 23/42 (54%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 34 EAKQRKSANNKDAKLPIEIGGRKGLDPTRFGDWEKNGISIDF 75
EA++R+ A K A P EIGG KG +PTR+GDWE+ G DF
Sbjct: 1 EAEERRPAARK-AVNPGEIGGPKGPEPTRYGDWERKGRVTDF 41
The members of this family are sequences derived from hypothetical eukaryotic and bacterial proteins. The region in question is approximately 60 residues long. Length = 41
>gnl|CDD|38455 KOG3245, KOG3245, KOG3245, Uncharacterized conserved protein [Function unknown]
Back Show alignment and domain information
Score = 39.7 bits (92), Expect = 2e-04
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 51 EIGGRKGLDPTRFGDWEKNGISIDF 75
EIGG +G +PTR+GDWE+ G DF
Sbjct: 82 EIGGPRGPEPTRYGDWERKGRCSDF 106
>gnl|CDD|35067 COG5508, COG5508, Uncharacterized conserved small protein [Function unknown]
Back Show alignment and domain information
Score = 62.4 bits (151), Expect = 3e-11
Identities = 30/54 (55%), Positives = 40/54 (74%), Gaps = 1/54 (1%)
Query: 23 PLSSIAKRALEEAKQRKSANN-KDAKLPIEIGGRKGLDPTRFGDWEKNGISIDF 75
L+ A+RAL+EA+ R++A+ K+ LP EIGGR GL+PTR+GDWE G IDF
Sbjct: 31 DLTPAAQRALKEAEARRAASEEKNLSLPKEIGGRGGLEPTRYGDWEHKGRVIDF 84
Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity Alignment graph Length
Definition
Probability
Target
75
hypothetical protein CLIBASIA_01465 [Candidatus Liberib
COG5508 84
Uncharacterized conserved small protein [Function unkno
99.88
pfam07896 41
DUF1674 Protein of unknown function (DUF1674). The memb
99.74
KOG3245 106
consensus
99.59
>COG5508 Uncharacterized conserved small protein [Function unknown]
Back Show alignment and domain information
Probab=99.88 E-value=2.8e-23 Score=142.51 Aligned_cols=59 Identities=51% Similarity=0.861 Sum_probs=52.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHH-HHHHHCCCHHCCCCCCCCCCCCCCHHCCCEECCC
Q ss_conf 5575445899999999999997412-2122106510188889986433610007865149
Q gi|254780408|r 17 IKTSHDPLSSIAKRALEEAKQRKSA-NNKDAKLPIEIGGRKGLDPTRFGDWEKNGISIDF 75 (75)
Q Consensus 17 ~~~~~~~ls~aA~rAL~Ea~~rr~~-~~~~~~~pkE~gG~~G~ePtRyGDWE~kG~~~DF 75 (75)
T Consensus 25 ~~~~~~~ltpAa~ralkea~arraa~ee~~~s~pkEiGGrgGlePtRyGDWe~KGr~iDF 84 (84)
T COG5508 25 DARPSFDLTPAAQRALKEAEARRAASEEKNLSLPKEIGGRGGLEPTRYGDWEHKGRVIDF 84 (84)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCEECCC
T ss_conf 543255788378999999999887776641365065578788886544643006634579
>pfam07896 DUF1674 Protein of unknown function (DUF1674)
Back Show alignment and domain information
Probab=99.74 E-value=4.8e-19 Score=120.41 Aligned_cols=41 Identities=54% Similarity=0.953 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHCCCHHCCCCCCCCCCCCCCHHCCCEECCC
Q ss_conf 999974122122106510188889986433610007865149
Q gi|254780408|r 34 EAKQRKSANNKDAKLPIEIGGRKGLDPTRFGDWEKNGISIDF 75 (75)
Q Consensus 34 Ea~~rr~~~~~~~~~pkE~gG~~G~ePtRyGDWE~kG~~~DF 75 (75)
T Consensus 1 eae~r~~~~~-~~~~P~E~GGp~g~ePtRyGDWE~kG~~~DF 41 (41)
T pfam07896 1 EAEERRPAAR-KAVNPGEIGGPKGPEPTRYGDWERKGRVTDF 41 (41)
T ss_pred CHHHHHHHHH-CCCCCCCCCCCCCCCCCCCCCCCCCCEECCC
T ss_conf 9788888754-3458844588999997544650107775669
The members of this family are sequences derived from hypothetical eukaryotic and bacterial proteins. The region in question is approximately 60 residues long.
>KOG3245 consensus
Back Show alignment and domain information
Probab=99.59 E-value=1.4e-16 Score=107.49 Aligned_cols=57 Identities=35% Similarity=0.520 Sum_probs=40.2
Q ss_pred CCCCCCCHH-HHHHHH-HHHHHHHHHHHHHCCCHHCCCCCCCCCCCCCCHHCCCEECCC
Q ss_conf 754458999-999999-999974122122106510188889986433610007865149
Q gi|254780408|r 19 TSHDPLSSI-AKRALE-EAKQRKSANNKDAKLPIEIGGRKGLDPTRFGDWEKNGISIDF 75 (75)
Q Consensus 19 ~~~~~ls~a-A~rAL~-Ea~~rr~~~~~~~~~pkE~gG~~G~ePtRyGDWE~kG~~~DF 75 (75)
T Consensus 48 ~p~~~L~e~~a~~~~~~Ekepl~~~p~~vNp~TgEiGGprGPEPTRYGDWErkgr~~~F 106 (106)
T KOG3245 48 LPLPMLPEGDAPHPSHLEKEPLKPWPNDVNPYTGEIGGPRGPEPTRYGDWERKGRCSDF 106 (106)
T ss_pred CCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCC
T ss_conf 57666664446684665205677886657855332378789997654506542522559
Homologous Domains in SCOP and MMDB Database Detected by RPS-BLAST and HHsearch
Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
Identity Alignment graph Length
Definition
E-value
Target
75
hypothetical protein CLIBASIA_01465 [Candidatus Li
2k5k_A_ 70
(A:) Uncharacterized protein RHR2; structural geno
8e-17
>2k5k_A (A:) Uncharacterized protein RHR2; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Rhodobacter sphaeroides 2}Length = 70
Back Hide alignment and structure
Score = 80.3 bits (198), Expect = 8e-17
Identities = 30/64 (46%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 12 MNNSTIKTSHDPLSSIAKRALEEAKQRKSANNKDAKLPIEIGGRKGLDPTRFGDWEKNGI 71
M + T + + L A RAL EA++R+ P EIGGR G +P RFGDWEK GI
Sbjct: 1 MRDMT-EETRKDLPPEALRALAEAEERRRRAKALDL-PKEIGGRNGPEPVRFGDWEKKGI 58
Query: 72 SIDF 75
+IDF
Sbjct: 59 AIDF 62
Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
Identity Alignment graph Length
Definition
Probability
Target 75
hypothetical protein CLIBASIA_01465 [Candidatus Liberib
2k5k_A_ 70
Uncharacterized protein RHR2; structural genomics,
99.91
>2k5k_A (A:) Uncharacterized protein RHR2; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Rhodobacter sphaeroides 2}
Back Hide alignment and structure
Probab=99.91 E-value=1.6e-25 Score=153.95 Aligned_cols=62 Identities=48% Similarity=0.854 Sum_probs=54.8
Q ss_pred HCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCCCHHCCCEECCC
Q ss_conf 0046555754458999999999999974122122106510188889986433610007865149
Q gi|254780408|r 12 MNNSTIKTSHDPLSSIAKRALEEAKQRKSANNKDAKLPIEIGGRKGLDPTRFGDWEKNGISIDF 75 (75)
Q Consensus 12 m~~~~~~~~~~~ls~aA~rAL~Ea~~rr~~~~~~~~~pkE~gG~~G~ePtRyGDWE~kG~~~DF 75 (75)
|+++ .+++.++|+++|+|||+||++|+.+.. ...+|+|+|||+|||||||||||+|||||||
T Consensus 1 m~~~-~~~~~~~l~~aA~ral~Ea~~rr~~~~-~~~~~~E~GG~~G~EPtRyGDWE~kGr~~DF 62 (70)
T 2k5k_A 1 MRDM-TEETRKDLPPEALRALAEAEERRRRAK-ALDLPKEIGGRNGPEPVRFGDWEKKGIAIDF 62 (70)
T ss_dssp CCSC-CCSCCCSCCTHHHHHHHHHHTCCTTTT-TCCCCCCSCCCCCCCCCSCCCCCCCSTTCCC
T ss_pred CCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHH-HCCCCCCCCCCCCCCCCCCCCHHHCCEEEEH
T ss_conf 9876-656667799999999999999886122-0237722389999998655631117876404