254780408

 Score =  103 bits (256), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 49/64 (76%), Positives = 56/64 (87%)

Query: 12 MNNSTIKTSHDPLSSIAKRALEEAKQRKSANNKDAKLPIEIGGRKGLDPTRFGDWEKNGI 71
          MNN+T K S + LSSIAKRALEEA+QR+SA NK+AK P+EIGGR G DPTRFGDWEKNG+
Sbjct: 1  MNNNTTKKSKETLSSIAKRALEEARQRRSAENKNAKHPVEIGGRDGPDPTRFGDWEKNGL 60

Query: 72 SIDF 75
          SIDF
Sbjct: 61 SIDF 64

Species: Candidatus Liberibacter solanacearum
Genus: Candidatus Liberibacter
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 43/64 (67%)

Query: 12 MNNSTIKTSHDPLSSIAKRALEEAKQRKSANNKDAKLPIEIGGRKGLDPTRFGDWEKNGI 71
          M++ +  T    L   A+RAL EA++R+     +A LP E+GGRKG +P R+GDWEK GI
Sbjct: 1  MSDDSQPTDRKDLPPAAQRALAEAEERRRLAEAEAPLPKELGGRKGPEPVRYGDWEKKGI 60

Query: 72 SIDF 75
          ++DF
Sbjct: 61 AVDF 64

Species: Roseovarius nubinhibens
Genus: Roseovarius
Family: Rhodobacteraceae
Order: Rhodobacterales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/53 (58%), Positives = 38/53 (71%)

Query: 23 PLSSIAKRALEEAKQRKSANNKDAKLPIEIGGRKGLDPTRFGDWEKNGISIDF 75
          PLS  AKRAL EA++R+     DA+   E+GG KG +PTRFGDWEK GI+ DF
Sbjct: 15 PLSEAAKRALAEAEERRRQAEADAEREKELGGPKGPEPTRFGDWEKKGITYDF 67

Species: Oceanicaulis sp. HTCC2633
Genus: Oceanicaulis
Family: Hyphomonadaceae
Order: Rhodobacterales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/54 (61%), Positives = 39/54 (72%), Gaps = 1/54 (1%)

Query: 23 PLSSIAKRALEEAKQRKSANNK-DAKLPIEIGGRKGLDPTRFGDWEKNGISIDF 75
          PLS  AKRAL EA++R+ A  +    LP EIGGR G DP+RFGDWE NG +IDF
Sbjct: 21 PLSPAAKRALAEAEERRKAQAQAQTDLPPEIGGRGGADPSRFGDWEINGRTIDF 74

Species: Agrobacterium tumefaciens
Genus: Agrobacterium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 44/64 (68%), Gaps = 2/64 (3%)

Query: 12 MNNSTIKTSHDPLSSIAKRALEEAKQRKSANNKDAKLPIEIGGRKGLDPTRFGDWEKNGI 71
          M ++   T +D L   A+RAL EA++R++   K A LP E+GGR G +P RFGDWEK GI
Sbjct: 1  MTDTPTNTPND-LPPAAQRALAEAEERRALEAKQA-LPKELGGRDGPEPVRFGDWEKKGI 58

Query: 72 SIDF 75
          ++DF
Sbjct: 59 AVDF 62

Species: Thalassiobium sp. R2A62
Genus: Thalassobium
Family: Rhodobacteraceae
Order: Rhodobacterales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 47/76 (61%), Gaps = 4/76 (5%)

Query: 3  TVQINIRGL---MNNSTIKTSHDPLSSIAKRALEEAKQRKSANNKDAKLPIEIGGRKGLD 59
          T +   RGL   +  +    S   L   AKRAL EA++R+    K  +LP+E+GGR+G +
Sbjct: 10 TSKSRFRGLITSLGKNMTDASDTNLPPAAKRALAEAEERRK-KAKAKELPLELGGREGPE 68

Query: 60 PTRFGDWEKNGISIDF 75
          P R+GDWEK GI++DF
Sbjct: 69 PVRYGDWEKKGIAVDF 84

Species: Rhodobacteraceae bacterium HTCC2150
Genus: 
Family: Rhodobacteraceae
Order: Rhodobacterales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 38/64 (59%), Gaps = 1/64 (1%)

Query: 12 MNNSTIKTSHDPLSSIAKRALEEAKQRKSANNKDAKLPIEIGGRKGLDPTRFGDWEKNGI 71
          M+  T     D L   A RAL EA++R+ A       P E+GGR G DP R+GDWEK GI
Sbjct: 1  MSEETAPEKKD-LPPAAVRALAEAEERRKAAEAQEPRPKELGGRDGPDPARYGDWEKKGI 59

Query: 72 SIDF 75
          +IDF
Sbjct: 60 AIDF 63

Species: Rhodobacterales bacterium Y4I
Genus: 
Family: 
Order: Rhodobacterales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 43/68 (63%), Gaps = 7/68 (10%)

Query: 13 NNSTIKTSHDP--LSSIAKRALEEA---KQRKSANNKDAKLPIEIGGRKGLDPTRFGDWE 67
          +   + +  DP  LS  AKRALEEA   ++R++A   DA  P EIGGR G DP R+GDWE
Sbjct: 5  SREEVPSRRDPATLSPAAKRALEEAEDRRKRRAAQQADA--PREIGGRDGPDPARYGDWE 62

Query: 68 KNGISIDF 75
            GI+ DF
Sbjct: 63 VKGIATDF 70

Species: Chelativorans sp. BNC1
Genus: Chelativorans
Family: Phyllobacteriaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 1/63 (1%)

Query: 13 NNSTIKTSHDPLSSIAKRALEEAKQRKSANNKDAKLPIEIGGRKGLDPTRFGDWEKNGIS 72
          N+++      PLS  A RAL+EA++R+ A     ++P E+GGR GLDP RFGDWE  G +
Sbjct: 5  NDNSPDHPRRPLSPAALRALKEAEERRGAKAP-KEIPAEVGGRGGLDPARFGDWEIKGRA 63

Query: 73 IDF 75
          IDF
Sbjct: 64 IDF 66

Species: Sinorhizobium medicae
Genus: Sinorhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score = 61.6 bits (148), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/63 (52%), Positives = 44/63 (69%), Gaps = 4/63 (6%)

Query: 14 NSTIKTSHDPLSSIAKRALEEAKQR-KSANNKDAKLPIEIGGRKGLDPTRFGDWEKNGIS 72
          N+TI   H P+   A+RAL+EA++R K A N++   P+E GGR G DP R+GDWE NG +
Sbjct: 12 NTTI-PQHTPIPPEAQRALQEAEERRKCATNENQ--PLENGGRGGKDPARYGDWEINGRA 68

Query: 73 IDF 75
          IDF
Sbjct: 69 IDF 71

Species: Bartonella rochalimae
Genus: Bartonella
Family: Bartonellaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score = 66.0 bits (162), Expect = 2e-12
 Identities = 23/42 (54%), Positives = 29/42 (69%), Gaps = 1/42 (2%)

Query: 34 EAKQRKSANNKDAKLPIEIGGRKGLDPTRFGDWEKNGISIDF 75
          EA++R+ A  K A  P EIGG KG +PTR+GDWE+ G   DF
Sbjct: 1  EAEERRPAARK-AVNPGEIGGPKGPEPTRYGDWERKGRVTDF 41

The members of this family are sequences derived from hypothetical eukaryotic and bacterial proteins. The region in question is approximately 60 residues long. Length = 41

 Score = 39.7 bits (92), Expect = 2e-04
 Identities = 15/25 (60%), Positives = 19/25 (76%)

Query: 51  EIGGRKGLDPTRFGDWEKNGISIDF 75
           EIGG +G +PTR+GDWE+ G   DF
Sbjct: 82  EIGGPRGPEPTRYGDWERKGRCSDF 106

Length = 106

 Score = 62.4 bits (151), Expect = 3e-11
 Identities = 30/54 (55%), Positives = 40/54 (74%), Gaps = 1/54 (1%)

Query: 23 PLSSIAKRALEEAKQRKSANN-KDAKLPIEIGGRKGLDPTRFGDWEKNGISIDF 75
           L+  A+RAL+EA+ R++A+  K+  LP EIGGR GL+PTR+GDWE  G  IDF
Sbjct: 31 DLTPAAQRALKEAEARRAASEEKNLSLPKEIGGRGGLEPTRYGDWEHKGRVIDF 84

Length = 84

Probab=99.88  E-value=2.8e-23  Score=142.51  Aligned_cols=59  Identities=51%  Similarity=0.861  Sum_probs=52.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHH-HHHHHCCCHHCCCCCCCCCCCCCCHHCCCEECCC
Q ss_conf             5575445899999999999997412-2122106510188889986433610007865149
Q gi|254780408|r   17 IKTSHDPLSSIAKRALEEAKQRKSA-NNKDAKLPIEIGGRKGLDPTRFGDWEKNGISIDF   75 (75)
Q Consensus        17 ~~~~~~~ls~aA~rAL~Ea~~rr~~-~~~~~~~pkE~gG~~G~ePtRyGDWE~kG~~~DF   75 (75)
T Consensus        25 ~~~~~~~ltpAa~ralkea~arraa~ee~~~s~pkEiGGrgGlePtRyGDWe~KGr~iDF   84 (84)
T COG5508          25 DARPSFDLTPAAQRALKEAEARRAASEEKNLSLPKEIGGRGGLEPTRYGDWEHKGRVIDF   84 (84)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCEECCC
T ss_conf             543255788378999999999887776641365065578788886544643006634579

Probab=99.74  E-value=4.8e-19  Score=120.41  Aligned_cols=41  Identities=54%  Similarity=0.953  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHHHCCCHHCCCCCCCCCCCCCCHHCCCEECCC
Q ss_conf             999974122122106510188889986433610007865149
Q gi|254780408|r   34 EAKQRKSANNKDAKLPIEIGGRKGLDPTRFGDWEKNGISIDF   75 (75)
Q Consensus        34 Ea~~rr~~~~~~~~~pkE~gG~~G~ePtRyGDWE~kG~~~DF   75 (75)
T Consensus         1 eae~r~~~~~-~~~~P~E~GGp~g~ePtRyGDWE~kG~~~DF   41 (41)
T pfam07896         1 EAEERRPAAR-KAVNPGEIGGPKGPEPTRYGDWERKGRVTDF   41 (41)
T ss_pred             CHHHHHHHHH-CCCCCCCCCCCCCCCCCCCCCCCCCCEECCC
T ss_conf             9788888754-3458844588999997544650107775669

The members of this family are sequences derived from hypothetical eukaryotic and bacterial proteins. The region in question is approximately 60 residues long.

Probab=99.59  E-value=1.4e-16  Score=107.49  Aligned_cols=57  Identities=35%  Similarity=0.520  Sum_probs=40.2

Q ss_pred             CCCCCCCHH-HHHHHH-HHHHHHHHHHHHHCCCHHCCCCCCCCCCCCCCHHCCCEECCC
Q ss_conf             754458999-999999-999974122122106510188889986433610007865149
Q gi|254780408|r   19 TSHDPLSSI-AKRALE-EAKQRKSANNKDAKLPIEIGGRKGLDPTRFGDWEKNGISIDF   75 (75)
Q Consensus        19 ~~~~~ls~a-A~rAL~-Ea~~rr~~~~~~~~~pkE~gG~~G~ePtRyGDWE~kG~~~DF   75 (75)
T Consensus        48 ~p~~~L~e~~a~~~~~~Ekepl~~~p~~vNp~TgEiGGprGPEPTRYGDWErkgr~~~F  106 (106)
T KOG3245          48 LPLPMLPEGDAPHPSHLEKEPLKPWPNDVNPYTGEIGGPRGPEPTRYGDWERKGRCSDF  106 (106)
T ss_pred             CCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCC
T ss_conf             57666664446684665205677886657855332378789997654506542522559

 Score = 79.6 bits (196), Expect = 2e-16
 Identities = 32/64 (50%), Positives = 40/64 (62%), Gaps = 2/64 (3%)

Query: 12 MNNSTIKTSHDPLSSIAKRALEEAKQRKSANNKDAKLPIEIGGRKGLDPTRFGDWEKNGI 71
          M + T + +   L   A RAL EA++R+    K   LP EIGGR G +P RFGDWEK GI
Sbjct: 1  MRDMT-EETRKDLPPEALRALAEAEERRRRA-KALDLPKEIGGRNGPEPVRFGDWEKKGI 58

Query: 72 SIDF 75
          +IDF
Sbjct: 59 AIDF 62

Probab=99.93  E-value=1e-27  Score=164.54  Aligned_cols=62  Identities=52%  Similarity=0.883  Sum_probs=53.8

Q ss_pred             HCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCCCHHCCCEECCC
Q ss_conf             0046555754458999999999999974122122106510188889986433610007865149
Q gi|254780408|r   12 MNNSTIKTSHDPLSSIAKRALEEAKQRKSANNKDAKLPIEIGGRKGLDPTRFGDWEKNGISIDF   75 (75)
Q Consensus        12 m~~~~~~~~~~~ls~aA~rAL~Ea~~rr~~~~~~~~~pkE~gG~~G~ePtRyGDWE~kG~~~DF   75 (75)
                      |+|.+ +...++||++|+|||+||++||+. .....+|+|+|||+|||||||||||+|||||||
T Consensus         1 m~d~t-~~~~k~l~paA~rAL~EA~~rr~~-~~~~~~p~E~gG~~GpEPTRyGDWE~kG~~~DF   62 (70)
T 2k5k_A            1 MRDMT-EETRKDLPPEALRALAEAEERRRR-AKALDLPKEIGGRNGPEPVRFGDWEKKGIAIDF   62 (70)
T ss_dssp             CCSCC-CSCCCSCCTHHHHHHHHHHTCCTT-TTTCCCCCCSCCCCCCCCCSCCCCCCCSTTCCC
T ss_pred             CCCCC-CCCCCCCCHHHHHHHHHHHHHHHH-HHCCCCCCCCCCCCCCCCCCCCCHHHCCEEEEH
T ss_conf             97655-465677999999999999999873-201337723389999998655630107776304

 Score = 80.3 bits (198), Expect = 8e-17
 Identities = 30/64 (46%), Positives = 38/64 (59%), Gaps = 2/64 (3%)

Query: 12 MNNSTIKTSHDPLSSIAKRALEEAKQRKSANNKDAKLPIEIGGRKGLDPTRFGDWEKNGI 71
          M + T + +   L   A RAL EA++R+         P EIGGR G +P RFGDWEK GI
Sbjct: 1  MRDMT-EETRKDLPPEALRALAEAEERRRRAKALDL-PKEIGGRNGPEPVRFGDWEKKGI 58

Query: 72 SIDF 75
          +IDF
Sbjct: 59 AIDF 62

Probab=99.91  E-value=1.6e-25  Score=153.95  Aligned_cols=62  Identities=48%  Similarity=0.854  Sum_probs=54.8

Q ss_pred             HCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCCCHHCCCEECCC
Q ss_conf             0046555754458999999999999974122122106510188889986433610007865149
Q gi|254780408|r   12 MNNSTIKTSHDPLSSIAKRALEEAKQRKSANNKDAKLPIEIGGRKGLDPTRFGDWEKNGISIDF   75 (75)
Q Consensus        12 m~~~~~~~~~~~ls~aA~rAL~Ea~~rr~~~~~~~~~pkE~gG~~G~ePtRyGDWE~kG~~~DF   75 (75)
                      |+++ .+++.++|+++|+|||+||++|+.+.. ...+|+|+|||+|||||||||||+|||||||
T Consensus         1 m~~~-~~~~~~~l~~aA~ral~Ea~~rr~~~~-~~~~~~E~GG~~G~EPtRyGDWE~kGr~~DF   62 (70)
T 2k5k_A            1 MRDM-TEETRKDLPPEALRALAEAEERRRRAK-ALDLPKEIGGRNGPEPVRFGDWEKKGIAIDF   62 (70)
T ss_dssp             CCSC-CCSCCCSCCTHHHHHHHHHHTCCTTTT-TCCCCCCSCCCCCCCCCSCCCCCCCSTTCCC
T ss_pred             CCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHH-HCCCCCCCCCCCCCCCCCCCCHHHCCEEEEH
T ss_conf             9876-656667799999999999999886122-0237722389999998655631117876404