254780427
hypothetical protein CLIBASIA_01560
GeneID in NCBI database: | 8209413 | Locus tag: | CLIBASIA_01560 |
Protein GI in NCBI database: | 254780427 | Protein Accession: | YP_003064840.1 |
Gene range: | -(334246, 334761) | Protein Length: | 171aa |
Gene description: | hypothetical protein | ||
COG prediction: | [R] Predicted metal-dependent hydrolase | ||
KEGG prediction: | hypothetical protein; K07042 | ||
SEED prediction: | FIG000233: metal-dependent hydrolase | ||
Pathway involved in KEGG: | not defined | ||
Subsystem involved in SEED: | Phosphate metabolism | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 171 | hypothetical protein CLIBASIA_01560 [Candidatus Liberib | |||
315122127 | 163 | hypothetical protein CKC_01885 [Candidatus Liberibacter | 1 | 4e-56 | |
227820630 | 173 | hypothetical protein NGR_c00430 [Sinorhizobium fredii N | 1 | 9e-35 | |
153008092 | 162 | hypothetical protein Oant_0756 [Ochrobactrum anthropi A | 1 | 9e-35 | |
150395270 | 168 | hypothetical protein Smed_0042 [Sinorhizobium medicae W | 1 | 1e-34 | |
86356031 | 171 | hypothetical protein RHE_CH00374 [Rhizobium etli CFN 42 | 1 | 2e-34 | |
15964160 | 168 | hypothetical protein SMc01113 [Sinorhizobium meliloti 1 | 1 | 3e-34 | |
189025205 | 190 | Diacyglycerol kinase [Brucella abortus S19] Length = 19 | 1 | 6e-34 | |
306843573 | 195 | conserved hypothetical protein [Brucella sp. BO1] Lengt | 1 | 7e-34 | |
241202783 | 171 | hypothetical protein Rleg_0029 [Rhizobium leguminosarum | 1 | 8e-34 | |
239833204 | 162 | conserved hypothetical protein [Ochrobactrum intermediu | 1 | 8e-34 |
>gi|315122127|ref|YP_004062616.1| hypothetical protein CKC_01885 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 163 | Back alignment and organism information |
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Score = 221 bits (562), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 113/166 (68%), Positives = 136/166 (81%), Gaps = 3/166 (1%) Query: 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSH 65 +N P+L+L IAVE+ LWG++ L LCEVV AKA+S L SK F E+I E+S VFTDS+ Sbjct: 1 MNPPKLNLHIAVESELWGEDFDLSVLCEVVLAKAISFLTSKKDFSLEDI-EVSFVFTDSN 59 Query: 66 RIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENH 125 RI+ LN +YRGIDKPTNVLSFP+ +S S MLGDIVLAYE++E EANVLGK+F++H Sbjct: 60 RIKELNAQYRGIDKPTNVLSFPSVLSSE--YSGAMLGDIVLAYEVMEAEANVLGKKFKDH 117 Query: 126 LVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 LVHLIIHGFLHLL YDHVDD+DA +MEGLERSIL DLGI+DPYE+D Sbjct: 118 LVHLIIHGFLHLLRYDHVDDEDARLMEGLERSILADLGIDDPYELD 163 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|227820630|ref|YP_002824600.1| hypothetical protein NGR_c00430 [Sinorhizobium fredii NGR234] Length = 173 | Back alignment and organism information |
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>gi|153008092|ref|YP_001369307.1| hypothetical protein Oant_0756 [Ochrobactrum anthropi ATCC 49188] Length = 162 | Back alignment and organism information |
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>gi|150395270|ref|YP_001325737.1| hypothetical protein Smed_0042 [Sinorhizobium medicae WSM419] Length = 168 | Back alignment and organism information |
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>gi|86356031|ref|YP_467923.1| hypothetical protein RHE_CH00374 [Rhizobium etli CFN 42] Length = 171 | Back alignment and organism information |
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>gi|15964160|ref|NP_384513.1| hypothetical protein SMc01113 [Sinorhizobium meliloti 1021] Length = 168 | Back alignment and organism information |
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>gi|189025205|ref|YP_001935973.1| Diacyglycerol kinase [Brucella abortus S19] Length = 190 | Back alignment and organism information |
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>gi|306843573|ref|ZP_07476174.1| conserved hypothetical protein [Brucella sp. BO1] Length = 195 | Back alignment and organism information |
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>gi|241202783|ref|YP_002973879.1| hypothetical protein Rleg_0029 [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 171 | Back alignment and organism information |
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>gi|239833204|ref|ZP_04681533.1| conserved hypothetical protein [Ochrobactrum intermedium LMG 3301] Length = 162 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 171 | hypothetical protein CLIBASIA_01560 [Candidatus Liberib | ||
PRK00016 | 159 | PRK00016, PRK00016, metal-binding heat shock protein; P | 3e-37 | |
COG0319 | 153 | COG0319, COG0319, Predicted metal-dependent hydrolase [ | 2e-31 | |
TIGR00043 | 110 | TIGR00043, TIGR00043, metalloprotein, YbeY/UPF0054 fami | 5e-30 | |
PRK13963 | 258 | PRK13963, PRK13963, unkown domain/putative metalloprote | 7e-24 | |
PLN02887 | 580 | PLN02887, PLN02887, hydrolase family protein | 5e-12 | |
pfam02130 | 141 | pfam02130, UPF0054, Uncharacterized protein family UPF0 | 3e-33 |
>gnl|CDD|178796 PRK00016, PRK00016, metal-binding heat shock protein; Provisional | Back alignment and domain information |
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>gnl|CDD|30667 COG0319, COG0319, Predicted metal-dependent hydrolase [General function prediction only] | Back alignment and domain information |
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>gnl|CDD|161678 TIGR00043, TIGR00043, metalloprotein, YbeY/UPF0054 family | Back alignment and domain information |
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>gnl|CDD|184423 PRK13963, PRK13963, unkown domain/putative metalloprotease fusion protein; Provisional | Back alignment and domain information |
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>gnl|CDD|178475 PLN02887, PLN02887, hydrolase family protein | Back alignment and domain information |
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>gnl|CDD|145339 pfam02130, UPF0054, Uncharacterized protein family UPF0054 | Back alignment and domain information |
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Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 171 | hypothetical protein CLIBASIA_01560 [Candidatus Liberib | ||
PRK00016 | 159 | putative metalloprotease; Provisional | 100.0 | |
COG0319 | 153 | Predicted metal-dependent hydrolase [General function p | 100.0 | |
PRK13963 | 258 | unkown domain/putative metalloprotease fusion protein; | 100.0 | |
TIGR00043 | 123 | TIGR00043 conserved hypothetical protein TIGR00043; Int | 100.0 | |
pfam02130 | 141 | UPF0054 Uncharacterized protein family UPF0054. | 100.0 |
>PRK00016 putative metalloprotease; Provisional | Back alignment and domain information |
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>COG0319 Predicted metal-dependent hydrolase [General function prediction only] | Back alignment and domain information |
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>PRK13963 unkown domain/putative metalloprotease fusion protein; Provisional | Back alignment and domain information |
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>TIGR00043 TIGR00043 conserved hypothetical protein TIGR00043; InterPro: IPR002036 These, as yet, uncharacterised proteins are of 17 to 21 kDa | Back alignment and domain information |
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>pfam02130 UPF0054 Uncharacterized protein family UPF0054 | Back alignment and domain information |
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Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
Identity | Alignment graph | Length | Definition | E-value |
Target | 171 | hypothetical protein CLIBASIA_01560 [Candidatus Liberib | ||
1xax_A | 154 | Nmr Structure Of Hi0004, A Putative Essential Gene | 5e-28 | |
1xm5_A | 155 | Crystal Structure Of Metal-Dependent Hydrolase Ybey | 2e-24 | |
1oz9_A | 150 | Crystal Structure Of Aq_1354, A Hypothetical Protei | 2e-18 | |
1tvi_A | 172 | Solution Structure Of Tm1509 From Thermotoga Mariti | 6e-15 |
gi|60593985|pdb|1XAX|A Chain A, Nmr Structure Of Hi0004, A Putative Essential Gene Product From Haemophilus Influenzae Length = 154 | Back alignment and structure |
Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats. Identities = 59/167 (35%), Positives = 84/167 (50%), Gaps = 15/167 (8%) Query: 6 VNLPRLDLQIAVEN-ALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDS 64 + +DLQIA EN E + + N VE+++ D Sbjct: 1 MGSVLVDLQIATENIEGLPTEEQIVQWATGAVQ------------PEGNEVEMTVRIVDE 48 Query: 65 HRIETLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFEN 124 LN YRG D+PTNVLSFP D +LGD+V+ +++E EA+ K Sbjct: 49 AESHELNLTYRGKDRPTNVLSFPFE--CPDEVELPLLGDLVICRQVVEREASEQEKPLMA 106 Query: 125 HLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 H H+++HG LHLLGYDH++D +A ME LE I++ LG +DPY + Sbjct: 107 HWAHMVVHGSLHLLGYDHIEDDEAEEMESLETQIMQGLGFDDPYLAE 153 |
gi|56554600|pdb|1XM5|A Chain A, Crystal Structure Of Metal-Dependent Hydrolase Ybey From E. Coli, Pfam Upf0054 Length = 155 | Back alignment and structure |
gi|37927359|pdb|1OZ9|A Chain A, Crystal Structure Of Aq_1354, A Hypothetical Protein From Aquifex Aeolicus Length = 150 | Back alignment and structure |
>gi|220702590|pdb|1TVI|A Chain A, Solution Structure Of Tm1509 From Thermotoga Maritima: Vt1, A Nesgc Target Protein Length = 172 | Back alignment and structure |
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 171 | hypothetical protein CLIBASIA_01560 [Candidatus Liberib | ||
1xax_A | 154 | Hypothetical UPF0054 protein HI0004; structural genomic | 2e-29 | |
1xm5_A | 155 | Hypothetical UPF0054 protein YBEY; structural genomics, | 4e-29 | |
1tvi_A | 172 | Hypothetical UPF0054 protein TM1509; alpha + beta, mixe | 7e-25 | |
1oz9_A | 150 | Hypothetical protein AQ_1354; matrix metalloproteinase | 3e-24 |
>1xax_A Hypothetical UPF0054 protein HI0004; structural genomics, MMP, hydrolase, protein structure initiative, S2F, structure 2 function project; NMR {Haemophilus influenzae} Length = 154 | Back alignment and structure |
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Score = 123 bits (310), Expect = 2e-29 Identities = 60/162 (37%), Positives = 84/162 (51%), Gaps = 15/162 (9%) Query: 11 LDLQIAVENALW-GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 +DLQIA EN E + + N VE+++ D Sbjct: 6 VDLQIATENIEGLPTEEQIVQWATGAVQP------------EGNEVEMTVRIVDEAESHE 53 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG D+PTNVLSFP F D +LGD+V+ +++E EA+ K H H+ Sbjct: 54 LNLTYRGKDRPTNVLSFP--FECPDEVELPLLGDLVICRQVVEREASEQEKPLMAHWAHM 111 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 ++HG LHLLGYDH++D +A ME LE I++ LG +DPY + Sbjct: 112 VVHGSLHLLGYDHIEDDEAEEMESLETQIMQGLGFDDPYLAE 153 |
>1xm5_A Hypothetical UPF0054 protein YBEY; structural genomics, protein structure initiative, nysgxrc target T842, PFAM family UPF0054, PSI; 2.70A {Escherichia coli} SCOP: d.92.1.15 Length = 155 | Back alignment and structure |
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>1tvi_A Hypothetical UPF0054 protein TM1509; alpha + beta, mixed 4-stranded beta sheet, four helix bundle, structural genomics; NMR {Thermotoga maritima} SCOP: d.92.1.15 Length = 172 | Back alignment and structure |
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>1oz9_A Hypothetical protein AQ_1354; matrix metalloproteinase type fold, structural genomics, BSGC structure funded by NIH; 1.89A {Aquifex aeolicus} SCOP: d.92.1.15 Length = 150 | Back alignment and structure |
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Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 171 | hypothetical protein CLIBASIA_01560 [Candidatus Liberib | ||
1xm5_A | 155 | Hypothetical UPF0054 protein YBEY; structural genomics, | 100.0 | |
1xax_A | 154 | Hypothetical UPF0054 protein HI0004; structural genomic | 100.0 | |
1oz9_A | 150 | Hypothetical protein AQ_1354; matrix metalloproteinase | 100.0 | |
1tvi_A | 172 | Hypothetical UPF0054 protein TM1509; alpha + beta, mixe | 100.0 |
>1xm5_A Hypothetical UPF0054 protein YBEY; structural genomics, protein structure initiative, nysgxrc target T842, PFAM family UPF0054, PSI; 2.70A {Escherichia coli} SCOP: d.92.1.15 | Back alignment and structure |
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Probab=100.00 E-value=0 Score=292.37 Aligned_cols=153 Identities=39% Similarity=0.648 Sum_probs=128.7 Q ss_pred CCCCCEEEEEEECCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECHHHHHHHHHHHHHCCCCCCEEE Q ss_conf 13543058888548521111352579999999999997432201466743899998577999999999850489851566 Q gi|254780427|r 6 VNLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLS 85 (171) Q Consensus 6 ~~~~~i~I~i~ie~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eisi~l~dd~~i~~LN~~yr~kd~~TDVLS 85 (171) |+..++++++.|++..+ ++.... +.+|+..++... .+.++|||.|||+++|++||++||++|+|||||| T Consensus 1 m~~~~i~iq~~~~~~~~---~P~~~~----i~~~~~~~l~~~----~~~~evsi~~v~~~~m~~LN~~yr~kd~~TDVLS 69 (155) T 1xm5_A 1 MSQVILDLQLACEDNSG---LPEESQ----FQTWLNAVIPQF----QEESEVTIRVVDTAESHSLNLTYRGKDKPTNVLS 69 (155) T ss_dssp CCEEEEEEEECSSSCCS---CCCHHH----HHHHHHTTSHHH----HSEEEEEEEEECHHHHHHHHHHHHCCSSCCSEEE T ss_pred CCCEEEEEEEECCCCCC---CCCHHH----HHHHHHHHHHHC----CCCEEEEEEEECHHHHHHHHHHHHCCCCCCCEEE T ss_conf 98359998764378768---889999----999999999846----9981799999897999999999948999985798 Q ss_pred ECCCCCCCCCCCCCCHHEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCC Q ss_conf 32556677765653002046518888744666189899999999999899863888998899999999999999986888 Q gi|254780427|r 86 FPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIN 165 (171) Q Consensus 86 FP~~~~~~~~~~~~~LGDIvIs~~~i~~eA~~~~~~~~~e~~~l~iHG~LHLlGydH~~~~~~~~M~~~E~~iL~~l~i~ 165 (171) ||+... +..+...||||+||+++|.+||+++++++.+|++||+|||+|||+||||+++++++.|+++|+++|+++|++ T Consensus 70 Fp~~~~--~~~~~~~lGDI~I~~~~i~~~A~~~~~s~~~el~~l~iHG~LHLlGyDH~~~~~~~~M~~~E~~~L~~lg~~ 147 (155) T 1xm5_A 70 FPFEVP--PGMEMSLLGDLVICRQVVEKEAQEQGKPLEAHWAHMVVHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYE 147 (155) T ss_dssp EECCCC--SSCCCCEEEEEEEEHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHTTCC T ss_pred EECCCC--CCCCCCCCCCEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCC T ss_conf 742025--676644445556649999999999199799999999999999973788898389999999999999986999 Q ss_pred CCCCCC Q ss_conf 864479 Q gi|254780427|r 166 DPYEVD 171 (171) Q Consensus 166 ~PY~~~ 171 (171) |||-.+ T Consensus 148 nPY~~~ 153 (155) T 1xm5_A 148 DPYIAE 153 (155) T ss_dssp CSCCC- T ss_pred CCCCCC T ss_conf 987655 |
>1xax_A Hypothetical UPF0054 protein HI0004; structural genomics, MMP, hydrolase, protein structure initiative, S2F, structure 2 function project; NMR {Haemophilus influenzae} | Back alignment and structure |
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>1oz9_A Hypothetical protein AQ_1354; matrix metalloproteinase type fold, structural genomics, BSGC structure funded by NIH; 1.89A {Aquifex aeolicus} SCOP: d.92.1.15 | Back alignment and structure |
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>1tvi_A Hypothetical UPF0054 protein TM1509; alpha + beta, mixed 4-stranded beta sheet, four helix bundle, structural genomics; NMR {Thermotoga maritima} SCOP: d.92.1.15 | Back alignment and structure |
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Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | E-value |
171 | hypothetical protein CLIBASIA_01560 [Candidatus Liberib | |||
d1xm5a_ | 152 | d.92.1.15 (A:) Hypothetical protein YbeY {Escherichia c | 2e-28 | |
d1oz9a_ | 141 | d.92.1.15 (A:) Hypothetical protein Aq_1354 {Aquifex ae | 5e-23 | |
d1tvia_ | 150 | d.92.1.15 (A:) Hypothetical protein TM1509 {Thermotoga | 1e-22 |
>d1xm5a_ d.92.1.15 (A:) Hypothetical protein YbeY {Escherichia coli [TaxId: 562]} Length = 152 | Back information, alignment and structure |
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class: Alpha and beta proteins (a+b) fold: Zincin-like superfamily: Metalloproteases ("zincins"), catalytic domain family: Predicted metal-dependent hydrolase domain: Hypothetical protein YbeY species: Escherichia coli [TaxId: 562] Score = 118 bits (298), Expect = 2e-28 Identities = 62/159 (38%), Positives = 86/159 (54%), Gaps = 15/159 (9%) Query: 11 LDLQIAVENALW-GDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIET 69 LDLQ+A E+ +E +T V + + E+++ D+ + Sbjct: 6 LDLQLACEDNSGLPEESQFQTWLNAVIPQ------------FQEESEVTIRVVDTAESHS 53 Query: 70 LNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHL 129 LN YRG DKPTNVLSFP F G +LGD+V+ +++E EA GK E H H+ Sbjct: 54 LNLTYRGKDKPTNVLSFP--FEVPPGMEMSLLGDLVICRQVVEKEAQEQGKPLEAHWAHM 111 Query: 130 IIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPY 168 ++HG LHLLGYDH++D +A ME LE I+ LG DPY Sbjct: 112 VVHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYEDPY 150 |
>d1oz9a_ d.92.1.15 (A:) Hypothetical protein Aq_1354 {Aquifex aeolicus [TaxId: 63363]} Length = 141 | Back information, alignment and structure |
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>d1tvia_ d.92.1.15 (A:) Hypothetical protein TM1509 {Thermotoga maritima [TaxId: 2336]} Length = 150 | Back information, alignment and structure |
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Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | Probability |
Target | 171 | hypothetical protein CLIBASIA_01560 [Candidatus Liberib | ||
d1xm5a_ | 152 | Hypothetical protein YbeY {Escherichia coli [TaxId: 562 | 100.0 | |
d1tvia_ | 150 | Hypothetical protein TM1509 {Thermotoga maritima [TaxId | 100.0 | |
d1oz9a_ | 141 | Hypothetical protein Aq_1354 {Aquifex aeolicus [TaxId: | 100.0 |
>d1xm5a_ d.92.1.15 (A:) Hypothetical protein YbeY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a+b) fold: Zincin-like superfamily: Metalloproteases ("zincins"), catalytic domain family: Predicted metal-dependent hydrolase domain: Hypothetical protein YbeY species: Escherichia coli [TaxId: 562] Probab=100.00 E-value=0 Score=291.59 Aligned_cols=150 Identities=40% Similarity=0.652 Sum_probs=126.4 Q ss_pred CCCCEEEEEEECCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECHHHHHHHHHHHHHCCCCCCEEEE Q ss_conf 35430588885485211113525799999999999974322014667438999985779999999998504898515663 Q gi|254780427|r 7 NLPRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSF 86 (171) Q Consensus 7 ~~~~i~I~i~ie~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eisi~l~dd~~i~~LN~~yr~kd~~TDVLSF 86 (171) +..+++|++.+++..+ ++..+ .+.+|+..++... .+..+|||.|||+++|++||++|||+|+||||||| T Consensus 2 ~~~~idi~~~~~~~~~---lP~~~----~i~~~l~~~l~~~----~~~~evsi~~v~~~~m~~LN~~yr~~d~~TDVLSF 70 (152) T d1xm5a_ 2 SQVILDLQLACEDNSG---LPEES----QFQTWLNAVIPQF----QEESEVTIRVVDTAESHSLNLTYRGKDKPTNVLSF 70 (152) T ss_dssp CEEEEEEEECSSSCCS---CCCHH----HHHHHHHTTSHHH----HSEEEEEEEEECHHHHHHHHHHHHCCSSCCSEEEE T ss_pred CCEEEEEEEECCCCCC---CCCHH----HHHHHHHHHHHHC----CCCEEEEEEEECHHHHHHHHHHHHCCCCCCCEEEE T ss_conf 8349999985378658---88999----9999999999836----89838999999989999999998545888645886 Q ss_pred CCCCCCCCCCCCCCHHEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 25566777656530020465188887446661898999999999998998638889988999999999999999868888 Q gi|254780427|r 87 PTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGIND 166 (171) Q Consensus 87 P~~~~~~~~~~~~~LGDIvIs~~~i~~eA~~~~~~~~~e~~~l~iHG~LHLlGydH~~~~~~~~M~~~E~~iL~~l~i~~ 166 (171) |+... +..+..+||||+||+++|.+||+++++++.+|++||+|||+|||+||||+++++++.|+++|+++|+++|++| T Consensus 71 p~~~~--~~~~~~~lGdI~I~~~~i~~~A~~~~~~~~~e~~~l~iHG~LHLlGyDH~~~~~~~~M~~~E~~~L~~l~~~n 148 (152) T d1xm5a_ 71 PFEVP--PGMEMSLLGDLVICRQVVEKEAQEQGKPLEAHWAHMVVHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYED 148 (152) T ss_dssp ECCCC--SSCCCCEEEEEEEEHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHTTCCC T ss_pred ECCCC--CCCCCCCCCCEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCC T ss_conf 24468--8777453353677599999899883840988888999999999737888984899999999999999869999 Q ss_pred CCC Q ss_conf 644 Q gi|254780427|r 167 PYE 169 (171) Q Consensus 167 PY~ 169 (171) ||- T Consensus 149 PY~ 151 (152) T d1xm5a_ 149 PYI 151 (152) T ss_dssp SCC T ss_pred CCC T ss_conf 867 |
>d1tvia_ d.92.1.15 (A:) Hypothetical protein TM1509 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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>d1oz9a_ d.92.1.15 (A:) Hypothetical protein Aq_1354 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
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Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 171 | hypothetical protein CLIBASIA_01560 [Candidatus Li | ||
1xax_A_ | 154 | (A:) Hypothetical UPF0054 protein HI0004; structur | 3e-30 | |
1xm5_A_ | 155 | (A:) Hypothetical UPF0054 protein YBEY; structural | 3e-29 | |
1oz9_A_ | 150 | (A:) Hypothetical protein AQ_1354; matrix metallop | 9e-28 | |
1tvi_A_ | 172 | (A:) Hypothetical UPF0054 protein TM1509; alpha + | 7e-27 |
>1xax_A (A:) Hypothetical UPF0054 protein HI0004; structural genomics, MMP, hydrolase, protein structure initiative, S2F, structure 2 function project; NMR {Haemophilus influenzae}Length = 154 | Back alignment and structure |
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Score = 125 bits (315), Expect = 3e-30 Identities = 50/163 (30%), Positives = 77/163 (47%), Gaps = 11/163 (6%) Query: 9 PRLDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIE 68 + + + + + + E VE+++ D Sbjct: 2 GSVLVDLQIATENIEGLPTEEQIVQWATGAV-------QPEGNE--VEMTVRIVDEAESH 52 Query: 69 TLNFEYRGIDKPTNVLSFPTAFASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVH 128 LN YRG D+PTNVLSFP +LGD+V+ +++E EA+ K H H Sbjct: 53 ELNLTYRGKDRPTNVLSFPFECPDEVEL--PLLGDLVICRQVVEREASEQEKPLMAHWAH 110 Query: 129 LIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEVD 171 +++HG LHLLGYDH++D +A ME LE I++ LG +DPY + Sbjct: 111 MVVHGSLHLLGYDHIEDDEAEEMESLETQIMQGLGFDDPYLAE 153 |
>1xm5_A (A:) Hypothetical UPF0054 protein YBEY; structural genomics, protein structure initiative, nysgxrc target T842, PFAM family UPF0054, PSI; 2.70A {Escherichia coli}Length = 155 | Back alignment and structure |
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>1oz9_A (A:) Hypothetical protein AQ_1354; matrix metalloproteinase type fold, structural genomics, BSGC structure funded by NIH; 1.89A {Aquifex aeolicus}Length = 150 | Back alignment and structure |
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>1tvi_A (A:) Hypothetical UPF0054 protein TM1509; alpha + beta, mixed 4-stranded beta sheet, four helix bundle, structural genomics; NMR {Thermotoga maritima}Length = 172 | Back alignment and structure |
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Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 171 | hypothetical protein CLIBASIA_01560 [Candidatus Liberib | ||
1xm5_A_ | 155 | Hypothetical UPF0054 protein YBEY; structural geno | 100.0 | |
1xax_A_ | 154 | Hypothetical UPF0054 protein HI0004; structural ge | 100.0 | |
1tvi_A_ | 172 | Hypothetical UPF0054 protein TM1509; alpha + beta, | 100.0 | |
1oz9_A_ | 150 | Hypothetical protein AQ_1354; matrix metalloprotei | 100.0 |
>1xm5_A (A:) Hypothetical UPF0054 protein YBEY; structural genomics, protein structure initiative, nysgxrc target T842, PFAM family UPF0054, PSI; 2.70A {Escherichia coli} | Back alignment and structure |
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Probab=100.00 E-value=0 Score=295.18 Aligned_cols=150 Identities=36% Similarity=0.594 Sum_probs=124.5 Q ss_pred EEEEEEECCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECHHHHHHHHHHHHHCCCCCCEEEECCCC Q ss_conf 05888854852111135257999999999999743220146674389999857799999999985048985156632556 Q gi|254780427|r 11 LDLQIAVENALWGDEIHLRTLCEVVFAKAVSNLISKGYFVKENIVELSLVFTDSHRIETLNFEYRGIDKPTNVLSFPTAF 90 (171) Q Consensus 11 i~I~i~ie~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eisi~l~dd~~i~~LN~~yr~kd~~TDVLSFP~~~ 90 (171) +.++|.+.+..|.... ... .+.+++..++... ...++|||.|||+++|++||++|||+|+||||||||+.+ T Consensus 4 ~~~~i~i~~~~~~~~~-~~~----~~~~~~~~~~~~~----~~~~eisi~~vdd~~i~~LN~~yr~~d~pTDVLSFp~~~ 74 (155) T 1xm5_A 4 VILDLQLACEDNSGLP-EES----QFQTWLNAVIPQF----QEESEVTIRVVDTAESHSLNLTYRGKDKPTNVLSFPFEV 74 (155) T ss_dssp EEEEEEECSSSCCSCC-CHH----HHHHHHHTTSHHH----HSEEEEEEEEECHHHHHHHHHHHHCCSSCCSEEEEECCC T ss_pred EEEEEEEECCCCCCCC-CHH----HHHHHHHHHHHHC----CCCEEEEEEEECHHHHHHHHHHHHCCCCCCCEEEEECCC T ss_conf 5999887437855888-999----9999999999836----898489999999899999999985458886458763447 Q ss_pred CCCCCCCCCCHHEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 67776565300204651888874466618989999999999989986388899889999999999999998688886447 Q gi|254780427|r 91 ASSDGCSSLMLGDIVLAYEIIEIEANVLGKEFENHLVHLIIHGFLHLLGYDHVDDKDACVMEGLERSILEDLGINDPYEV 170 (171) Q Consensus 91 ~~~~~~~~~~LGDIvIs~~~i~~eA~~~~~~~~~e~~~l~iHG~LHLlGydH~~~~~~~~M~~~E~~iL~~l~i~~PY~~ 170 (171) ... ....+|||||||+++|.+||.++|+++.+|+++|+|||+|||+||||+++++++.|+.+|+++|+.+|+++||.. T Consensus 75 ~~~--~~~~~LGDI~Is~~~~~~qA~~~~~s~~~el~~l~vHG~LHLlGyDH~~~~e~~~M~~~E~~iL~~lg~~~py~~ 152 (155) T 1xm5_A 75 PPG--MEMSLLGDLVICRQVVEKEAQEQGKPLEAHWAHMVVHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYEDPYIA 152 (155) T ss_dssp CSS--CCCCEEEEEEEEHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHTTCCCSCCC T ss_pred CCC--CCCCCCCCEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC T ss_conf 887--664434425664999998998809978897678889999997378889817999999999999998699998766 Q ss_pred C Q ss_conf 9 Q gi|254780427|r 171 D 171 (171) Q Consensus 171 ~ 171 (171) + T Consensus 153 ~ 153 (155) T 1xm5_A 153 E 153 (155) T ss_dssp - T ss_pred C T ss_conf 6 |
>1xax_A (A:) Hypothetical UPF0054 protein HI0004; structural genomics, MMP, hydrolase, protein structure initiative, S2F, structure 2 function project; NMR {Haemophilus influenzae} | Back alignment and structure |
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>1tvi_A (A:) Hypothetical UPF0054 protein TM1509; alpha + beta, mixed 4-stranded beta sheet, four helix bundle, structural genomics; NMR {Thermotoga maritima} | Back alignment and structure |
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>1oz9_A (A:) Hypothetical protein AQ_1354; matrix metalloproteinase type fold, structural genomics, BSGC structure funded by NIH; 1.89A {Aquifex aeolicus} | Back alignment and structure |
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