254780438
pyridoxine 5'-phosphate synthase
GeneID in NCBI database: | 8209424 | Locus tag: | CLIBASIA_01615 |
Protein GI in NCBI database: | 254780438 | Protein Accession: | YP_003064851.1 |
Gene range: | +(345013, 345798) | Protein Length: | 261aa |
Gene description: | pyridoxine 5'-phosphate synthase | ||
COG prediction: | none | ||
KEGG prediction: | pdxJ; pyridoxine 5'-phosphate synthase; K03474 pyridoxine 5-phosphate synthase [EC:2.6.99.2] | ||
SEED prediction: | Pyridoxine-phosphate synthase (EC 2.6.99.2) | ||
Pathway involved in KEGG: | Vitamin B6 metabolism [PATH:las00750] | ||
Subsystem involved in SEED: | Pyridoxin (Vitamin B6) Biosynthesis | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
Identity | Alignment graph | Length | Definition | E-value | |
Target | 261 | pyridoxine 5'-phosphate synthase [Candidatus Liberibact | |||
254781094 | 702 | glycyl-tRNA synthetase subunit beta [Candidatus Li | 0.008 |
>gi|254781094|ref|YP_003065507.1| glycyl-tRNA synthetase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 702 | Back alignment |
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Score = 32.3 bits (72), Expect = 0.008, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 7/57 (12%) Query: 142 GNEHS-LQAAKLTGADCIELYTGPYGACYNNPQQERIFLNKLAITAQLAQKMDLQIN 197 G E++ LQ ++ D IE + P G N P NK++IT LA K+D IN Sbjct: 438 GKEYAVLQNENISCCDAIEEHLKPRGPLENVPT------NKISITVSLADKLDTLIN 488 |
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 261 | pyridoxine 5'-phosphate synthase [Candidatus Liberibact | |||
315122113 | 251 | pyridoxine 5'-phosphate synthase [Candidatus Liberibact | 1 | 1e-116 | |
222149066 | 250 | pyridoxine 5'-phosphate synthase [Agrobacterium vitis S | 1 | 7e-90 | |
86358373 | 250 | pyridoxal phosphate biosynthetic protein PdxJ [Rhizobiu | 1 | 5e-89 | |
218682862 | 250 | pyridoxine 5'-phosphate synthase [Rhizobium etli CIAT 8 | 1 | 3e-88 | |
241205472 | 250 | pyridoxine 5'-phosphate synthase [Rhizobium leguminosar | 1 | 1e-87 | |
116252964 | 250 | pyridoxine 5'-phosphate synthase [Rhizobium leguminosar | 1 | 1e-87 | |
327191455 | 250 | pyridoxine 5'-phosphate synthase [Rhizobium etli CNPAF5 | 1 | 6e-87 | |
218462778 | 250 | pyridoxine 5'-phosphate synthase [Rhizobium etli Kim 5] | 1 | 8e-87 | |
209550095 | 250 | pyridoxine 5'-phosphate synthase [Rhizobium leguminosar | 1 | 1e-86 | |
325293390 | 251 | Pyridoxine 5'-phosphate synthase [Agrobacterium sp. H13 | 1 | 1e-86 |
>gi|315122113|ref|YP_004062602.1| pyridoxine 5'-phosphate synthase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 251 | Back alignment and organism information |
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Score = 421 bits (1081), Expect = e-116, Method: Compositional matrix adjust. Identities = 198/248 (79%), Positives = 221/248 (89%) Query: 1 MSTSVSVNLNAVAVLRNRRNLPWPNLVHIGKIALQSGASGLTVHPRPDQRHIRYTDLPEI 60 MST+VS+NLNAVA+LRNRRNLPWP+LVHIG+IALQSGASGLTVHPRPDQRHIRYTDLP+I Sbjct: 1 MSTNVSINLNAVAMLRNRRNLPWPDLVHIGRIALQSGASGLTVHPRPDQRHIRYTDLPKI 60 Query: 61 RRLIDEQFPKAELNIEGYPNETFLNLCERYKPEQITLVPDDPHQLTSDHGWDFLQNQALL 120 R+LIDE+FPKAELNIEGYPNE FL LCE YKPEQ TLVPDDP+QLTSDHGWDF+ NQ LL Sbjct: 61 RQLIDEEFPKAELNIEGYPNEKFLFLCENYKPEQATLVPDDPNQLTSDHGWDFVNNQKLL 120 Query: 121 TKTVARLHNLGSRISLFADGNGNEHSLQAAKLTGADCIELYTGPYGACYNNPQQERIFLN 180 T+TV++LH+LG R+SLFADG+G++ LQ AKLTGADCIELYTGPYGACY+NPQQE I L Sbjct: 121 TRTVSKLHDLGCRVSLFADGDGHKDCLQRAKLTGADCIELYTGPYGACYDNPQQESILLE 180 Query: 181 KLAITAQLAQKMDLQINAGHDLTIQNIPNLINAIPYISEISVGHAFAATALECGVKEAVF 240 KLA+TA LAQ M +INAGHDLTIQNIP L+ +IPYISEISVGHAF ALE G KEAV Sbjct: 181 KLALTAHLAQDMHFKINAGHDLTIQNIPQLVASIPYISEISVGHAFTVAALEYGTKEAVL 240 Query: 241 CFRRACGQ 248 FR ACGQ Sbjct: 241 RFRHACGQ 248 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|222149066|ref|YP_002550023.1| pyridoxine 5'-phosphate synthase [Agrobacterium vitis S4] Length = 250 | Back alignment and organism information |
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>gi|86358373|ref|YP_470265.1| pyridoxal phosphate biosynthetic protein PdxJ [Rhizobium etli CFN 42] Length = 250 | Back alignment and organism information |
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>gi|218682862|ref|ZP_03530463.1| pyridoxine 5'-phosphate synthase [Rhizobium etli CIAT 894] Length = 250 | Back alignment and organism information |
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>gi|241205472|ref|YP_002976568.1| pyridoxine 5'-phosphate synthase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 250 | Back alignment and organism information |
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>gi|116252964|ref|YP_768802.1| pyridoxine 5'-phosphate synthase [Rhizobium leguminosarum bv. viciae 3841] Length = 250 | Back alignment and organism information |
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>gi|327191455|gb|EGE58477.1| pyridoxine 5'-phosphate synthase [Rhizobium etli CNPAF512] Length = 250 | Back alignment and organism information |
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>gi|218462778|ref|ZP_03502869.1| pyridoxine 5'-phosphate synthase [Rhizobium etli Kim 5] Length = 250 | Back alignment and organism information |
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>gi|209550095|ref|YP_002282012.1| pyridoxine 5'-phosphate synthase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 250 | Back alignment and organism information |
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>gi|325293390|ref|YP_004279254.1| Pyridoxine 5'-phosphate synthase [Agrobacterium sp. H13-3] Length = 251 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 261 | pyridoxine 5'-phosphate synthase [Candidatus Liberibact | ||
PRK05265 | 239 | PRK05265, PRK05265, pyridoxine 5'-phosphate synthase; P | 3e-84 | |
COG0854 | 243 | COG0854, PdxJ, Pyridoxal phosphate biosynthesis protein | 6e-70 | |
pfam03740 | 239 | pfam03740, PdxJ, Pyridoxal phosphate biosynthesis prote | 1e-66 | |
TIGR00559 | 237 | TIGR00559, pdxJ, pyridoxine 5'-phosphate synthase | 3e-48 | |
cd00003 | 234 | cd00003, PNPsynthase, Pyridoxine 5'-phosphate (PNP) syn | 1e-71 |
>gnl|CDD|179983 PRK05265, PRK05265, pyridoxine 5'-phosphate synthase; Provisional | Back alignment and domain information |
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>gnl|CDD|31195 COG0854, PdxJ, Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism] | Back alignment and domain information |
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>gnl|CDD|112550 pfam03740, PdxJ, Pyridoxal phosphate biosynthesis protein PdxJ | Back alignment and domain information |
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>gnl|CDD|129650 TIGR00559, pdxJ, pyridoxine 5'-phosphate synthase | Back alignment and domain information |
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>gnl|CDD|58644 cd00003, PNPsynthase, Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism | Back alignment and domain information |
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Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 261 | pyridoxine 5'-phosphate synthase [Candidatus Liberibact | ||
PRK05265 | 240 | pyridoxine 5'-phosphate synthase; Provisional | 100.0 | |
pfam03740 | 239 | PdxJ Pyridoxal phosphate biosynthesis protein PdxJ. Mem | 100.0 | |
cd00003 | 234 | PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase doma | 100.0 | |
TIGR00559 | 265 | pdxJ pyridoxal phosphate biosynthetic protein PdxJ; Int | 100.0 | |
COG0854 | 243 | PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme | 100.0 | |
PRK08745 | 223 | ribulose-phosphate 3-epimerase; Provisional | 96.88 | |
PRK08883 | 220 | ribulose-phosphate 3-epimerase; Provisional | 96.05 | |
pfam00834 | 201 | Ribul_P_3_epim Ribulose-phosphate 3 epimerase family. T | 95.82 | |
PRK13209 | 283 | L-xylulose 5-phosphate 3-epimerase; Reviewed | 95.62 | |
PRK05581 | 220 | ribulose-phosphate 3-epimerase; Validated | 95.6 | |
PRK08005 | 210 | ribulose-phosphate 3-epimerase; Validated | 94.7 | |
cd00429 | 211 | RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme | 93.83 | |
TIGR02631 | 390 | xylA_Arthro xylose isomerase; InterPro: IPR013453 This | 90.64 | |
pfam05853 | 274 | DUF849 Prokaryotic protein of unknown function (DUF849) | 97.13 | |
PRK05301 | 375 | pyrroloquinoline quinone biosynthesis protein PqqE; Pro | 93.43 | |
cd00429 | 211 | RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme | 91.23 | |
PTZ00170 | 224 | D-ribulose-5-phosphate 3-epimerase; Provisional | 96.61 | |
PRK09722 | 227 | allulose-6-phosphate 3-epimerase; Provisional | 94.57 | |
pfam01261 | 201 | AP_endonuc_2 Xylose isomerase-like TIM barrel. This TIM | 93.13 | |
pfam01207 | 309 | Dus Dihydrouridine synthase (Dus). Members of this fami | 92.67 | |
cd02801 | 231 | DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FM | 90.58 | |
COG1082 | 274 | IolE Sugar phosphate isomerases/epimerases [Carbohydrat | 95.84 | |
PRK11815 | 333 | tRNA-dihydrouridine synthase A; Provisional | 94.21 | |
COG0269 | 217 | SgbH 3-hexulose-6-phosphate synthase and related protei | 94.05 | |
PRK07094 | 323 | biotin synthase; Provisional | 92.59 | |
PRK08745 | 223 | ribulose-phosphate 3-epimerase; Provisional | 95.05 | |
PRK09389 | 487 | (R)-citramalate synthase; Provisional | 93.46 | |
PRK05581 | 220 | ribulose-phosphate 3-epimerase; Validated | 93.41 | |
PTZ00170 | 224 | D-ribulose-5-phosphate 3-epimerase; Provisional | 93.25 | |
pfam00682 | 237 | HMGL-like HMGL-like. This family contains a diverse set | 92.84 | |
PRK04452 | 322 | acetyl-CoA decarbonylase/synthase complex subunit delta | 91.14 | |
cd04734 | 343 | OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN bind | 94.42 | |
cd02933 | 338 | OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding d | 92.71 | |
cd02930 | 353 | DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding dom | 90.44 | |
PRK09856 | 276 | fructoselysine 3-epimerase; Provisional | 93.76 | |
cd02803 | 327 | OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN bi | 93.62 | |
TIGR03471 | 472 | HpnJ hopanoid biosynthesis associated radical SAM prote | 93.47 | |
TIGR02090 | 371 | LEU1_arch isopropylmalate/citramalate/homocitrate synth | 92.88 | |
COG3142 | 241 | CutC Uncharacterized protein involved in copper resista | 91.48 | |
pfam03932 | 202 | CutC CutC family. Copper transport in Escherichia coli | 93.43 | |
COG5012 | 227 | Predicted cobalamin binding protein [General function p | 92.02 | |
PRK13306 | 216 | ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provi | 91.23 |
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional | Back alignment and domain information |
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>pfam03740 PdxJ Pyridoxal phosphate biosynthesis protein PdxJ | Back alignment and domain information |
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>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism | Back alignment and domain information |
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>TIGR00559 pdxJ pyridoxal phosphate biosynthetic protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
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>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism] | Back alignment and domain information |
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>PRK08745 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
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>PRK08883 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
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>pfam00834 Ribul_P_3_epim Ribulose-phosphate 3 epimerase family | Back alignment and domain information |
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>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed | Back alignment and domain information |
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>PRK05581 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
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>PRK08005 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
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>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE) | Back alignment and domain information |
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>TIGR02631 xylA_Arthro xylose isomerase; InterPro: IPR013453 This is an enzyme which as well as interconverting D-xylose and D-xylulose, is also active as a D-glucose isomerase | Back alignment and domain information |
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>pfam05853 DUF849 Prokaryotic protein of unknown function (DUF849) | Back alignment and domain information |
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>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional | Back alignment and domain information |
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>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE) | Back alignment and domain information |
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>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional | Back alignment and domain information |
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>PRK09722 allulose-6-phosphate 3-epimerase; Provisional | Back alignment and domain information |
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>pfam01261 AP_endonuc_2 Xylose isomerase-like TIM barrel | Back alignment and domain information |
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>pfam01207 Dus Dihydrouridine synthase (Dus) | Back alignment and domain information |
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>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
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>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism] | Back alignment and domain information |
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>PRK11815 tRNA-dihydrouridine synthase A; Provisional | Back alignment and domain information |
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>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
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>PRK07094 biotin synthase; Provisional | Back alignment and domain information |
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>PRK08745 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
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>PRK09389 (R)-citramalate synthase; Provisional | Back alignment and domain information |
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>PRK05581 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
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>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional | Back alignment and domain information |
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>pfam00682 HMGL-like HMGL-like | Back alignment and domain information |
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>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional | Back alignment and domain information |
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>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3 | Back alignment and domain information |
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>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
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>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain | Back alignment and domain information |
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>PRK09856 fructoselysine 3-epimerase; Provisional | Back alignment and domain information |
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>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
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>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ | Back alignment and domain information |
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>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases; InterPro: IPR011830 Methanogenic archaea contain three closely related homologs of the 2-isopropylmalate synthases (LeuA) represented by IPR005671 from INTERPRO | Back alignment and domain information |
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>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
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>pfam03932 CutC CutC family | Back alignment and domain information |
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>COG5012 Predicted cobalamin binding protein [General function prediction only] | Back alignment and domain information |
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>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional | Back alignment and domain information |
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Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
Identity | Alignment graph | Length | Definition | E-value |
Target | 261 | pyridoxine 5'-phosphate synthase [Candidatus Liberibact | ||
1ho1_A | 242 | Crystal Structure Of Pyridoxine 5'-Phosphate Syntha | 5e-70 | |
1m5w_A | 243 | 1.96 A Crystal Structure Of Pyridoxine 5'-Phosphate | 8e-70 | |
3f4n_A | 246 | Crystal Structure Of Pyridoxal Phosphate Biosynthet | 1e-66 | |
3gk0_A | 278 | Crystal Structure Of Pyridoxal Phosphate Biosynthet | 1e-61 | |
3o6c_A | 260 | Pyridoxal Phosphate Biosynthetic Protein Pdxj From | 2e-51 |
>gi|13786833|pdb|1HO1|A Chain A, Crystal Structure Of Pyridoxine 5'-Phosphate Synthase Length = 242 | Back alignment and structure |
Score = 268 bits (685), Expect = 5e-70, Method: Composition-based stats. Identities = 80/246 (32%), Positives = 127/246 (51%), Gaps = 9/246 (3%) Query: 5 VSVNLNAVAVLRNRRNLPWPNLVHIGKIALQSGASGLTVHPRPDQRHIRYTDLPEIRRLI 64 + VN++ +A LRN R +P+ V IA Q+GA G+TVH R D+RHI D+ +R Sbjct: 5 LGVNIDHIATLRNARGTAYPDPVQAAFIAEQAGADGITVHLREDRRHITDRDVRILR--- 61 Query: 65 DEQFPKAELNIEGYPNETFLNLCERYKPEQITLVPDDPHQLTSDHGWDFLQNQALLTKTV 124 Q +N+E E L + KP LVP+ ++T++ G D + + Sbjct: 62 --QTLDTRMNLEMAVTEEMLAIAVETKPHFCCLVPEKRQEVTTEGGLDVAGQRDKMRDAC 119 Query: 125 ARLHNLGSRISLFADGNGNEHSLQAAKLTGADCIELYTGPYGACYNNPQQERIFLNKLAI 184 RL + G ++SLF D + + +AA GA IE++TG Y + ++ L ++A Sbjct: 120 KRLADAGIQVSLFIDADEEQI--KAAAEVGAPFIEIHTGCYADAKTD-AEQAQELARIAK 176 Query: 185 TAQLAQKMDLQINAGHDLTIQNIPNLINAIPYISEISVGHAFAATALECGVKEAVFCFRR 244 A A + L++NAGH LT N+ I AIP + E+++GHA A+ G+K+AV +R Sbjct: 177 AATFAASLGLKVNAGHGLTYHNV-KAIAAIPEMHELNIGHAIIGRAVMTGLKDAVAEMKR 235 Query: 245 ACGQHL 250 + Sbjct: 236 LMLEAR 241 |
gi|34811392|pdb|1M5W|A Chain A, 1.96 A Crystal Structure Of Pyridoxine 5'-Phosphate Synthase In Complex With 1-Deoxy-D-Xylulose Phosphate Length = 243 | Back alignment and structure |
>gi|215261426|pdb|3F4N|A Chain A, Crystal Structure Of Pyridoxal Phosphate Biosynthetic Protein Pdxj From Yersinia Pestis Length = 246 | Back alignment and structure |
>gi|225698152|pdb|3GK0|A Chain A, Crystal Structure Of Pyridoxal Phosphate Biosynthetic Protein From Burkholderia Pseudomallei Length = 278 | Back alignment and structure |
>gi|302566287|pdb|3O6C|A Chain A, Pyridoxal Phosphate Biosynthetic Protein Pdxj From Campylobacter Jejuni Length = 260 | Back alignment and structure |
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 261 | pyridoxine 5'-phosphate synthase [Candidatus Liberibact | ||
1m5w_A | 243 | Pyridoxal phosphate biosynthetic protein PDXJ; TIM barr | 4e-56 | |
3o6c_A | 260 | PNP synthase, pyridoxine 5'-phosphate synthase; structu | 3e-54 | |
3gk0_A | 278 | PNP synthase, pyridoxine 5'-phosphate synthase; decode, | 2e-48 |
>1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A* Length = 243 | Back alignment and structure |
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Score = 212 bits (542), Expect = 4e-56 Identities = 82/240 (34%), Positives = 129/240 (53%), Gaps = 9/240 (3%) Query: 6 SVNLNAVAVLRNRRNLPWPNLVHIGKIALQSGASGLTVHPRPDQRHIRYTDLPEIRRLID 65 VN++ +A LRN R +P+ V IA Q+GA G+TVH R D+RHI D+ +R+ +D Sbjct: 7 GVNIDHIATLRNARGTAYPDPVQAAFIAEQAGADGITVHLREDRRHITDRDVRILRQTLD 66 Query: 66 EQFPKAELNIEGYPNETFLNLCERYKPEQITLVPDDPHQLTSDHGWDFLQNQALLTKTVA 125 + N+E E L + KP LVP+ ++T++ G D + + Sbjct: 67 TRM-----NLEMAVTEEMLAIAVETKPHFCCLVPEKRQEVTTEGGLDVAGQRDKMRDACK 121 Query: 126 RLHNLGSRISLFADGNGNEHSLQAAKLTGADCIELYTGPYGACYNNPQQERIFLNKLAIT 185 RL + G ++SLF D +E ++AA GA IE++TG Y + +Q + L ++A Sbjct: 122 RLADAGIQVSLFID--ADEEQIKAAAEVGAPFIEIHTGCYADAKTDAEQAQE-LARIAKA 178 Query: 186 AQLAQKMDLQINAGHDLTIQNIPNLINAIPYISEISVGHAFAATALECGVKEAVFCFRRA 245 A A + L++NAGH LT N+ I AIP + E+++GHA A+ G+K+AV +R Sbjct: 179 ATFAASLGLKVNAGHGLTYHNVK-AIAAIPEMHELNIGHAIIGRAVMTGLKDAVAEMKRL 237 |
>3o6c_A PNP synthase, pyridoxine 5'-phosphate synthase; structural genomics, IDP90671, center for structural genomic infectious diseases; HET: MSE; 1.87A {Campylobacter jejuni subsp} PDB: 3o6d_A* Length = 260 | Back alignment and structure |
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>3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei} Length = 278 | Back alignment and structure |
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Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 261 | pyridoxine 5'-phosphate synthase [Candidatus Liberibact | ||
3gk0_A | 278 | PNP synthase, pyridoxine 5'-phosphate synthase; decode, | 100.0 | |
1m5w_A | 243 | Pyridoxal phosphate biosynthetic protein PDXJ; TIM barr | 100.0 | |
3o6c_A | 260 | PNP synthase, pyridoxine 5'-phosphate synthase; structu | 100.0 | |
3inp_A | 246 | D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, | 95.43 | |
1rpx_A | 230 | Protein (ribulose-phosphate 3-epimerase); chloroplast, | 95.26 | |
2fli_A | 220 | Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D | 95.11 | |
3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; energy m | 95.03 | |
3ajx_A | 207 | 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily | 94.7 | |
1tqj_A | 230 | Ribulose-phosphate 3-epimerase; beta-alpha barrel epime | 94.36 | |
3exr_A | 221 | RMPD (hexulose-6-phosphate synthase); beta barrel, lyas | 93.85 | |
3ctl_A | 231 | D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosph | 93.77 | |
3kws_A | 287 | Putative sugar isomerase; structural genomics, joint ce | 93.43 | |
1q6o_A | 216 | Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; | 93.4 | |
3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, malonate | 93.05 | |
1h1y_A | 228 | D-ribulose-5-phosphate 3-epimerase; oxidative pentose p | 92.89 | |
2zvr_A | 290 | Uncharacterized protein TM_0416; hyperthermophIle, keto | 92.59 | |
1i60_A | 278 | IOLI protein; beta barrel, structural genomics, PSI, pr | 91.97 | |
1twd_A | 256 | Copper homeostasis protein CUTC; TIM-like protein, stru | 91.11 | |
3jr2_A | 218 | Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6 | 90.6 | |
3c6c_A | 316 | 3-keto-5-aminohexanoate cleavage enzyme; YP_293392.1, p | 97.05 | |
3no5_A | 275 | Uncharacterized protein; PFAM DUF849 domain containing | 96.22 | |
3chv_A | 284 | Prokaryotic domain of unknown function (DUF849) W barre | 96.1 | |
3dx5_A | 286 | Uncharacterized protein ASBF; beta-alpha barrel, petrob | 95.8 | |
3e02_A | 311 | Uncharacterized protein DUF849; structural genomics, jo | 95.52 | |
3lot_A | 314 | Uncharacterized protein; protein of unknown function, s | 95.38 | |
3e49_A | 311 | Uncharacterized protein DUF849 with A TIM barrel fold; | 95.22 | |
2qul_A | 290 | D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1 | 93.51 | |
3ju2_A | 284 | Uncharacterized protein SMC04130; structural genomics, | 91.06 | |
3iwp_A | 287 | Copper homeostasis protein CUTC homolog; conserved sequ | 95.53 | |
2bdq_A | 224 | Copper homeostasis protein CUTC; alpha beta protein, st | 95.39 | |
3cqj_A | 295 | L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, is | 94.98 | |
2hk0_A | 309 | D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00A {Ag | 93.69 | |
3iix_A | 348 | Biotin synthetase, putative; adoMet radical, SAM radica | 95.06 | |
1qwg_A | 251 | PSL synthase;, (2R)-phospho-3-sulfolactate synthase; be | 90.46 | |
2fli_A | 220 | Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D | 95.06 | |
3inp_A | 246 | D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, | 94.84 | |
1h1y_A | 228 | D-ribulose-5-phosphate 3-epimerase; oxidative pentose p | 92.37 | |
2x7v_A | 287 | Probable endonuclease 4; DNA repair protein, metal-bind | 92.95 | |
1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductase YQJ | 92.55 | |
1r30_A | 369 | Biotin synthase; SAM radical protein, TIM barrel, FES c | 91.47 | |
3ju2_A | 284 | Uncharacterized protein SMC04130; structural genomics, | 91.04 |
>3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei} | Back alignment and structure |
---|
Probab=100.00 E-value=0 Score=724.35 Aligned_cols=247 Identities=30% Similarity=0.462 Sum_probs=236.1 Q ss_pred CCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCH Q ss_conf 84533221443223220788689989999999974998999824788334888999998874000136741588834856 Q gi|254780438|r 2 STSVSVNLNAVAVLRNRRNLPWPNLVHIGKIALQSGASGLTVHPRPDQRHIRYTDLPEIRRLIDEQFPKAELNIEGYPNE 81 (261) Q Consensus 2 ~t~LsVNidhiAtLRnaRg~~~P~~~~~a~~~~~~GadgITvH~R~DrRHI~~~Dv~~l~~~~~~~~~~~elNiEg~p~~ 81 (261) ++|||||||||||||||||+++|||++||.+|+++||||||||||||||||||+||++|++.+ ++||||||+|++ T Consensus 31 ~~rL~VNIdhVAtLRnaRg~~~Pd~~~aA~~~~~~GAdgITvHlReDrRHI~d~Dv~~l~~~~-----~~~lNlE~a~~~ 105 (278) T 3gk0_A 31 AIDLGVNIDHVATLRNARGTAYPDPVRAALAAEDAGADAITLHLREDRRHIVDADVRTLRPRV-----KTRMNLECAVTP 105 (278) T ss_dssp GSEEEEECHHHHHHHHHHSSSCSCHHHHHHHHHHTTCSEEEEECCTTCSSSCHHHHHHHHHHC-----SSCEEEEECSSH T ss_pred CEEEEEEECCEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHH-----CCCCCCCCCCCH T ss_conf 248866411154201058989999999999999829986895268875657589999999873-----775577888709 Q ss_pred HHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHCCCCEEEEC Q ss_conf 89999985072128971016555333578221333788999998620269638997254444147999974066146511 Q gi|254780438|r 82 TFLNLCERYKPEQITLVPDDPHQLTSDHGWDFLQNQALLTKTVARLHNLGSRISLFADGNGNEHSLQAAKLTGADCIELY 161 (261) Q Consensus 82 e~i~ia~~ikP~qvtLVPe~r~elTTegGldv~~~~~~L~~~i~~l~~~girvSLFIDpd~~q~~i~~a~~~Gad~VElh 161 (261) +|+++|+++||+|||||||+|+|+|||||||+.++.++|+++|++|+++|||||||||||++| |++|+++|+|+|||| T Consensus 106 e~i~ia~~~kP~qvtLVPE~r~elTTegGlDv~~~~~~L~~~i~~Lk~~gIrVSLFIDPd~~q--i~~A~~~Gad~IELh 183 (278) T 3gk0_A 106 EMLDIACEIRPHDACLVPEKRSELTTEGGLDVVGHFDAVRAACKQLADAGVRVSLFIDPDEAQ--IRAAHETGAPVIELH 183 (278) T ss_dssp HHHHHHHHHCCSEEEECCCSGGGBCSSSSBCTTTTHHHHHHHHHHHHHTTCEEEEEECSCHHH--HHHHHHHTCSEEEEC T ss_pred HHHHHHHHCCCCEEEECCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCEEEEECCCHHH--HHHHHHCCCCEEEEE T ss_conf 999999966998799888885554555766206259999999999997498179983698789--999850599979972 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHH Q ss_conf 21110244435643366688999876654156235207898987799999736996388425999999999409999999 Q gi|254780438|r 162 TGPYGACYNNPQQERIFLNKLAITAQLAQKMDLQINAGHDLTIQNIPNLINAIPYISEISVGHAFAATALECGVKEAVFC 241 (261) Q Consensus 162 TG~Ya~a~~~~~~~~~el~~i~~aa~~A~~lgL~VnAGHgLn~~Nl~~~i~~Ip~I~EvsIGHaiIseAl~~GL~~aI~~ 241 (261) ||+||++|+..+ ...||++|+.++++|+++||+|||||||||+|++. +++||+|+||||||||||||||+||++||++ T Consensus 184 TG~YA~a~~~~~-~~~el~~i~~aa~~A~~lGL~VnAGHgLn~~Nl~~-i~~ip~i~EvnIGHaIIseAl~~Gl~~aV~~ 261 (278) T 3gk0_A 184 TGRYADAHDAAE-QQREFERIATGVDAGIALGLKVNAGHGLHYTNVQA-IAALPGIAELNIGHAIVAHAVFVGWDNAVRE 261 (278) T ss_dssp CHHHHTCSSHHH-HHHHHHHHHHHHHHHHHTTCEEEECTTCCTTTHHH-HHTCTTEEEEEECHHHHHHHHHHCHHHHHHH T ss_pred CHHHHCCCCCCC-CHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHH-HHCCCCCEEEECCHHHHHHHHHHHHHHHHHH T ss_conf 335533254320-07999999999999997187574678988667899-8618997698567999999999729999999 Q ss_pred HHHHHHHHHHHHHHHC Q ss_conf 9999974105655403 Q gi|254780438|r 242 FRRACGQHLDNTMRLT 257 (261) Q Consensus 242 ~~~ii~~~~~~~~~~~ 257 (261) |+++|+++|..++++- T Consensus 262 m~~ii~~aR~~~~~~~ 277 (278) T 3gk0_A 262 MKAIMVAARVAALHGG 277 (278) T ss_dssp HHHHHHHHHHHHHC-- T ss_pred HHHHHHHHHHHHCCCC T ss_conf 9999999844242179 |
>1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A* | Back alignment and structure |
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>3o6c_A PNP synthase, pyridoxine 5'-phosphate synthase; structural genomics, IDP90671, center for structural genomic infectious diseases; HET: MSE; 1.87A {Campylobacter jejuni subsp} PDB: 3o6d_A* | Back alignment and structure |
---|
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, structural genomics, center for structural genomics of infectious diseases; 2.05A {Francisella tularensis subsp} | Back alignment and structure |
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>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose phosphate pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2 | Back alignment and structure |
---|
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2 | Back alignment and structure |
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>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} | Back alignment and structure |
---|
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} | Back alignment and structure |
---|
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 | Back alignment and structure |
---|
>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} PDB: 3exs_A* 3ext_A | Back alignment and structure |
---|
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* | Back alignment and structure |
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>3kws_A Putative sugar isomerase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503} | Back alignment and structure |
---|
>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A* | Back alignment and structure |
---|
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} | Back alignment and structure |
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>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A | Back alignment and structure |
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>2zvr_A Uncharacterized protein TM_0416; hyperthermophIle, ketohexose 3- epimerase, D-tagatose 3-epimerase, isomerase; 2.20A {Thermotoga maritima} | Back alignment and structure |
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>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A | Back alignment and structure |
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>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A | Back alignment and structure |
---|
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid, csgid, Mg-bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} PDB: 3ieb_A* | Back alignment and structure |
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>3c6c_A 3-keto-5-aminohexanoate cleavage enzyme; YP_293392.1, prokaryotic protein of unknown function (DUF849), structural genomics; HET: MSE; 1.72A {Ralstonia eutropha JMP134} | Back alignment and structure |
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>3no5_A Uncharacterized protein; PFAM DUF849 domain containing protein, structural genomics, center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134} | Back alignment and structure |
---|
>3chv_A Prokaryotic domain of unknown function (DUF849) W barrel fold; TIM barrel fold, structural genomics, joint center for struc genomics; HET: MSE; 1.45A {Silicibacter pomeroyi dss-3} PDB: 3fa5_A | Back alignment and structure |
---|
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structural genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis} | Back alignment and structure |
---|
>3e02_A Uncharacterized protein DUF849; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.90A {Burkholderia xenovorans LB400} | Back alignment and structure |
---|
>3lot_A Uncharacterized protein; protein of unknown function, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.89A {Archaeoglobus fulgidus} | Back alignment and structure |
---|
>3e49_A Uncharacterized protein DUF849 with A TIM barrel fold; YP_556190.1; HET: MSE; 1.75A {Burkholderia xenovorans LB400} | Back alignment and structure |
---|
>2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A* | Back alignment and structure |
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>3ju2_A Uncharacterized protein SMC04130; structural genomics, PSI-2, TIM barrel protein, protein structure initiative, Zn binding domain; 1.80A {Sinorhizobium meliloti} | Back alignment and structure |
---|
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens} | Back alignment and structure |
---|
>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae} | Back alignment and structure |
---|
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif, structural genomics; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A | Back alignment and structure |
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>2hk0_A D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00A {Agrobacterium tumefaciens} PDB: 2hk1_A* | Back alignment and structure |
---|
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A* | Back alignment and structure |
---|
>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1 | Back alignment and structure |
---|
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2 | Back alignment and structure |
---|
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, structural genomics, center for structural genomics of infectious diseases; 2.05A {Francisella tularensis subsp} | Back alignment and structure |
---|
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A | Back alignment and structure |
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>2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding, hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima MSB8} PDB: 2x7w_A* | Back alignment and structure |
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>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJM; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
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>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1 | Back alignment and structure |
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>3ju2_A Uncharacterized protein SMC04130; structural genomics, PSI-2, TIM barrel protein, protein structure initiative, Zn binding domain; 1.80A {Sinorhizobium meliloti} | Back alignment and structure |
---|
Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | E-value |
261 | pyridoxine 5'-phosphate synthase [Candidatus Liberibact | |||
d1m5wa_ | 242 | c.1.24.1 (A:) Pyridoxine 5'-phosphate synthase {Escheri | 6e-47 |
>d1m5wa_ c.1.24.1 (A:) Pyridoxine 5'-phosphate synthase {Escherichia coli [TaxId: 562]} Length = 242 | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Pyridoxine 5'-phosphate synthase family: Pyridoxine 5'-phosphate synthase domain: Pyridoxine 5'-phosphate synthase species: Escherichia coli [TaxId: 562] Score = 181 bits (460), Expect = 6e-47 Identities = 80/240 (33%), Positives = 126/240 (52%), Gaps = 9/240 (3%) Query: 6 SVNLNAVAVLRNRRNLPWPNLVHIGKIALQSGASGLTVHPRPDQRHIRYTDLPEIRRLID 65 VN++ +A LRN R +P+ V IA Q+GA G+TVH R D+RHI D+ +R+ +D Sbjct: 6 GVNIDHIATLRNARGTAYPDPVQAAFIAEQAGADGITVHLREDRRHITDRDVRILRQTLD 65 Query: 66 EQFPKAELNIEGYPNETFLNLCERYKPEQITLVPDDPHQLTSDHGWDFLQNQALLTKTVA 125 + E E L + KP LVP+ ++T++ G D + + Sbjct: 66 TRMNL-----EMAVTEEMLAIAVETKPHFCCLVPEKRQEVTTEGGLDVAGQRDKMRDACK 120 Query: 126 RLHNLGSRISLFADGNGNEHSLQAAKLTGADCIELYTGPYGACYNNPQQERIFLNKLAIT 185 RL + G ++SLF + +E ++AA GA IE++TG Y A ++ L ++A Sbjct: 121 RLADAGIQVSLFI--DADEEQIKAAAEVGAPFIEIHTGCY-ADAKTDAEQAQELARIAKA 177 Query: 186 AQLAQKMDLQINAGHDLTIQNIPNLINAIPYISEISVGHAFAATALECGVKEAVFCFRRA 245 A A + L++NAGH LT N+ I AIP + E+++GHA A+ G+K+AV +R Sbjct: 178 ATFAASLGLKVNAGHGLTYHNVK-AIAAIPEMHELNIGHAIIGRAVMTGLKDAVAEMKRL 236 |
Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | Probability |
Target | 261 | pyridoxine 5'-phosphate synthase [Candidatus Liberibact | ||
d1m5wa_ | 242 | Pyridoxine 5'-phosphate synthase {Escherichia coli [Tax | 100.0 | |
d2flia1 | 217 | D-ribulose-5-phosphate 3-epimerase {Streptococcus pyoge | 95.41 | |
d1rpxa_ | 230 | D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tub | 95.28 | |
d1i60a_ | 278 | Hypothetical protein IolI {Bacillus subtilis [TaxId: 14 | 94.9 | |
d2g0wa1 | 275 | Hypothetical protein Lmo2234 {Listeria monocytogenes [T | 94.73 | |
d1h1ya_ | 220 | D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) | 94.67 | |
d2flia1 | 217 | D-ribulose-5-phosphate 3-epimerase {Streptococcus pyoge | 94.91 | |
d2q02a1 | 271 | Putative cytoplasmic protein STM4435 {Salmonella typhim | 92.84 | |
d1rpxa_ | 230 | D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tub | 91.54 | |
d1h1ya_ | 220 | D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) | 90.99 | |
d1z41a1 | 337 | NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 142 | 93.99 | |
d1ps9a1 | 330 | 2,4-dienoyl-CoA reductase, N-terminal domain {Escherich | 90.42 |
>d1m5wa_ c.1.24.1 (A:) Pyridoxine 5'-phosphate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Pyridoxine 5'-phosphate synthase family: Pyridoxine 5'-phosphate synthase domain: Pyridoxine 5'-phosphate synthase species: Escherichia coli [TaxId: 562] Probab=100.00 E-value=0 Score=723.03 Aligned_cols=240 Identities=33% Similarity=0.521 Sum_probs=230.6 Q ss_pred CCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCH Q ss_conf 84533221443223220788689989999999974998999824788334888999998874000136741588834856 Q gi|254780438|r 2 STSVSVNLNAVAVLRNRRNLPWPNLVHIGKIALQSGASGLTVHPRPDQRHIRYTDLPEIRRLIDEQFPKAELNIEGYPNE 81 (261) Q Consensus 2 ~t~LsVNidhiAtLRnaRg~~~P~~~~~a~~~~~~GadgITvH~R~DrRHI~~~Dv~~l~~~~~~~~~~~elNiEg~p~~ 81 (261) .++||||||||||||||||+++|||++||.+|+++||||||||||||||||||+||+.|++.+ ++|||+||+|++ T Consensus 2 ~m~LsVNidhiAtLRnaRg~~~Pd~~~~a~~~~~~GadgITvH~R~DrRHI~~~Dv~~l~~~~-----~~~lNlE~a~~~ 76 (242) T d1m5wa_ 2 ELLLGVNIDHIATLRNARGTAYPDPVQAAFIAEQAGADGITVHLREDRRHITDRDVRILRQTL-----DTRMNLEMAVTE 76 (242) T ss_dssp CCEEEEECHHHHHHHHTSSCCCSCHHHHHHHHHTTTCSEEEEECCTTCSSSCHHHHHHHHHHC-----SSEEEEEECSSH T ss_pred CCEEEEEECEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHH-----HCCCCCCCCCCH T ss_conf 845876311044210058999999999999999849986895778875655658899998875-----201254533422 Q ss_pred HHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHCCCCEEEEC Q ss_conf 89999985072128971016555333578221333788999998620269638997254444147999974066146511 Q gi|254780438|r 82 TFLNLCERYKPEQITLVPDDPHQLTSDHGWDFLQNQALLTKTVARLHNLGSRISLFADGNGNEHSLQAAKLTGADCIELY 161 (261) Q Consensus 82 e~i~ia~~ikP~qvtLVPe~r~elTTegGldv~~~~~~L~~~i~~l~~~girvSLFIDpd~~q~~i~~a~~~Gad~VElh 161 (261) +|+++|+++||+|||||||+|+|+|||||||+.++.++|+++|++|+++|||||||||||++| |++|+++|||+|||| T Consensus 77 e~i~ia~~~kP~qvtLVPe~r~elTTegGld~~~~~~~L~~~i~~l~~~girvSLFiDpd~~~--i~~a~~lGad~IElh 154 (242) T d1m5wa_ 77 EMLAIAVETKPHFCCLVPEKRQEVTTEGGLDVAGQRDKMRDACKRLADAGIQVSLFIDADEEQ--IKAAAEVGAPFIEIH 154 (242) T ss_dssp HHHHHHHHHCCSEEEECCCCSSCSSCCSCCCSGGGHHHHHHHHHHHHHTTCEEEEEECSCHHH--HHHHHHTTCSEEEEE T ss_pred HHHHHHHHHCCCEEEEEECCCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCEEEEEECCCHHH--HHHHHHCCCCEEEEE T ss_conf 489999871632278862575555767755202158899999999986697079994452465--778864276635532 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHH Q ss_conf 21110244435643366688999876654156235207898987799999736996388425999999999409999999 Q gi|254780438|r 162 TGPYGACYNNPQQERIFLNKLAITAQLAQKMDLQINAGHDLTIQNIPNLINAIPYISEISVGHAFAATALECGVKEAVFC 241 (261) Q Consensus 162 TG~Ya~a~~~~~~~~~el~~i~~aa~~A~~lgL~VnAGHgLn~~Nl~~~i~~Ip~I~EvsIGHaiIseAl~~GL~~aI~~ 241 (261) ||+||+++.++... .++++|++++++|+++||+|||||||||+|+++ +++||+|+||||||||||||||+||++||++ T Consensus 155 TG~Ya~a~~~~~~~-~el~~i~~aa~~A~~lGL~VnAGHgLn~~Nl~~-i~~ip~i~EvsIGHaiI~eal~~Gl~~aV~~ 232 (242) T d1m5wa_ 155 TGCYADAKTDAEQA-QELARIAKAATFAASLGLKVNAGHGLTYHNVKA-IAAIPEMHELNIGHAIIGRAVMTGLKDAVAE 232 (242) T ss_dssp CHHHHHCCSHHHHH-HHHHHHHHHHHHHHHTTCEEEEESSCCTTTHHH-HHTCTTEEEEEECHHHHHHHHHHCHHHHHHH T ss_pred CCCCCCCCCCHHHH-HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH-HHCCCCCEEEECCHHHHHHHHHHHHHHHHHH T ss_conf 02110235410257-789999999999986688555898867200599-8448997688456999999999719999999 Q ss_pred HHHHHHHHH Q ss_conf 999997410 Q gi|254780438|r 242 FRRACGQHL 250 (261) Q Consensus 242 ~~~ii~~~~ 250 (261) |+++|+++| T Consensus 233 ~~~ii~~~r 241 (242) T d1m5wa_ 233 MKRLMLEAR 241 (242) T ss_dssp HHHHHHHHH T ss_pred HHHHHHHCC T ss_conf 999998705 |
>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
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>d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
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>d1i60a_ c.1.15.4 (A:) Hypothetical protein IolI {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
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>d2g0wa1 c.1.15.4 (A:10-284) Hypothetical protein Lmo2234 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
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>d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
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>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
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>d2q02a1 c.1.15.4 (A:1-271) Putative cytoplasmic protein STM4435 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
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>d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
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>d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
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>d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
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>d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 261 | pyridoxine 5'-phosphate synthase [Candidatus Liber | ||
1m5w_A_ | 243 | (A:) Pyridoxal phosphate biosynthetic protein PDXJ | 2e-72 | |
3gk0_A_ | 278 | (A:) PNP synthase, pyridoxine 5'-phosphate synthas | 4e-72 |
>1m5w_A (A:) Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli}Length = 243 | Back alignment and structure |
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Score = 266 bits (682), Expect = 2e-72 Identities = 81/243 (33%), Positives = 129/243 (53%), Gaps = 9/243 (3%) Query: 6 SVNLNAVAVLRNRRNLPWPNLVHIGKIALQSGASGLTVHPRPDQRHIRYTDLPEIRRLID 65 VN++ +A LRN R +P+ V IA Q+GA G+TVH R D+RHI D+ +R+ + Sbjct: 7 GVNIDHIATLRNARGTAYPDPVQAAFIAEQAGADGITVHLREDRRHITDRDVRILRQTL- 65 Query: 66 EQFPKAELNIEGYPNETFLNLCERYKPEQITLVPDDPHQLTSDHGWDFLQNQALLTKTVA 125 +N+E E L + KP LVP+ ++T++ G D + + Sbjct: 66 ----DTRMNLEMAVTEEMLAIAVETKPHFCCLVPEKRQEVTTEGGLDVAGQRDKMRDACK 121 Query: 126 RLHNLGSRISLFADGNGNEHSLQAAKLTGADCIELYTGPYGACYNNPQQERIFLNKLAIT 185 RL + G ++SLF D +E ++AA GA IE++TG Y + +Q + L ++A Sbjct: 122 RLADAGIQVSLFID--ADEEQIKAAAEVGAPFIEIHTGCYADAKTDAEQAQE-LARIAKA 178 Query: 186 AQLAQKMDLQINAGHDLTIQNIPNLINAIPYISEISVGHAFAATALECGVKEAVFCFRRA 245 A A + L++NAGH LT N+ I AIP + E+++GHA A+ G+K+AV +R Sbjct: 179 ATFAASLGLKVNAGHGLTYHNVK-AIAAIPEMHELNIGHAIIGRAVMTGLKDAVAEMKRL 237 Query: 246 CGQ 248 + Sbjct: 238 MLE 240 |
>3gk0_A (A:) PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei}Length = 278 | Back alignment and structure |
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Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 261 | pyridoxine 5'-phosphate synthase [Candidatus Liberibact | ||
3gk0_A_ | 278 | PNP synthase, pyridoxine 5'-phosphate synthase; de | 100.0 | |
1m5w_A_ | 243 | Pyridoxal phosphate biosynthetic protein PDXJ; TIM | 100.0 | |
3inp_A_ | 246 | D-ribulose-phosphate 3-epimerase; IDP02542, isomer | 96.64 | |
1i60_A_ | 278 | IOLI protein; beta barrel, structural genomics, PS | 95.84 | |
3cqj_A_ | 295 | L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barre | 95.02 | |
1xi3_A_ | 215 | Thiamine phosphate pyrophosphorylase; structural g | 94.53 | |
3ctl_A_ | 231 | D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p | 94.19 | |
2fli_A_ | 220 | Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr | 93.97 | |
1q6o_A_ | 216 | Humps, 3-keto-L-gulonate 6-phosphate decarboxylase | 93.13 | |
1h1y_A_ | 228 | D-ribulose-5-phosphate 3-epimerase; oxidative pent | 92.37 | |
1xla_A_ | 394 | D-xylose isomerase; isomerase(intramolecular oxido | 91.34 | |
3c6c_A_ | 316 | 3-keto-5-aminohexanoate cleavage enzyme; YP_293392 | 96.69 | |
3e49_A_ | 311 | Uncharacterized protein DUF849 with A TIM barrel f | 96.61 | |
3dx5_A_ | 286 | Uncharacterized protein ASBF; beta-alpha barrel, p | 95.07 | |
3chv_A_ | 284 | Prokaryotic domain of unknown function (DUF849) wi | 94.89 | |
3inp_A_ | 246 | D-ribulose-phosphate 3-epimerase; IDP02542, isomer | 92.95 | |
2q02_A_ | 272 | Putative cytoplasmic protein; NP_463296.1, structu | 92.84 | |
3lot_A_ | 314 | Uncharacterized protein; protein of unknown functi | 96.29 | |
3e02_A_ | 311 | Uncharacterized protein DUF849; YP_555544.1, prote | 94.98 | |
2qul_A_ | 290 | D-tagatose 3-epimerase; beta/alpha barrel, isomera | 91.93 | |
1ps9_A_1-333 | 333 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 95.47 | |
1o94_A_1-343 | 343 | Tmadh, trimethylamine dehydrogenase; electron tran | 94.83 | |
3hgj_A_ | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 92.92 | |
1i60_A_ | 278 | IOLI protein; beta barrel, structural genomics, PS | 91.65 | |
1gte_A_523-742_762-821 | 280 | Dihydropyrimidine dehydrogenase; electron transfer | 95.21 | |
1xp3_A_ | 307 | Endonuclease IV; NFO, DNA replication, DNA recombi | 94.52 | |
2zbt_A_ | 297 | Pyridoxal biosynthesis lyase PDXS; pyridoxine bios | 92.9 | |
1qtw_A_ | 285 | Endonuclease IV; DNA repair enzyme, TIM barrel, tr | 94.27 |
>3gk0_A (A:) PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei} | Back alignment and structure |
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Probab=100.00 E-value=0 Score=714.48 Aligned_cols=247 Identities=30% Similarity=0.463 Sum_probs=238.8 Q ss_pred CCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCH Q ss_conf 84533221443223220788689989999999974998999824788334888999998874000136741588834856 Q gi|254780438|r 2 STSVSVNLNAVAVLRNRRNLPWPNLVHIGKIALQSGASGLTVHPRPDQRHIRYTDLPEIRRLIDEQFPKAELNIEGYPNE 81 (261) Q Consensus 2 ~t~LsVNidhiAtLRnaRg~~~P~~~~~a~~~~~~GadgITvH~R~DrRHI~~~Dv~~l~~~~~~~~~~~elNiEg~p~~ 81 (261) |++||||||||||||||||+++|||+++|.+|+++||||||+|||||||||||+||+.|++++ ++||||||+|++ T Consensus 31 m~~LgVNIDhVAtLRnaR~~~~PD~v~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~L~~~i-----~~~lNlE~a~t~ 105 (278) T 3gk0_A 31 AIDLGVNIDHVATLRNARGTAYPDPVRAALAAEDAGADAITLHLREDRRHIVDADVRTLRPRV-----KTRMNLECAVTP 105 (278) T ss_dssp GSEEEEECHHHHHHHHHHSSSCSCHHHHHHHHHHTTCSEEEEECCTTCSSSCHHHHHHHHHHC-----SSCEEEEECSSH T ss_pred CEEEEEEECCEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHCC-----CCCCCCCCCCHH T ss_conf 158877512165310058989999999999999839986995258876667578888887403-----556686656638 Q ss_pred HHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHCCCCEEEEC Q ss_conf 89999985072128971016555333578221333788999998620269638997254444147999974066146511 Q gi|254780438|r 82 TFLNLCERYKPEQITLVPDDPHQLTSDHGWDFLQNQALLTKTVARLHNLGSRISLFADGNGNEHSLQAAKLTGADCIELY 161 (261) Q Consensus 82 e~i~ia~~ikP~qvtLVPe~r~elTTegGldv~~~~~~L~~~i~~l~~~girvSLFIDpd~~q~~i~~a~~~Gad~VElh 161 (261) ||++||+++||+|||||||+|+|+|||||||+.++.++|+++|++|+++|||||||||||++| |++|+++|||+|||| T Consensus 106 emi~ia~~~kP~~vtLVPEkr~ElTTegGlDv~~~~~~L~~~i~~Lk~~gIrVSLFiDP~~~q--i~~A~~~GAd~VELh 183 (278) T 3gk0_A 106 EMLDIACEIRPHDACLVPEKRSELTTEGGLDVVGHFDAVRAACKQLADAGVRVSLFIDPDEAQ--IRAAHETGAPVIELH 183 (278) T ss_dssp HHHHHHHHHCCSEEEECCCSGGGBCSSSSBCTTTTHHHHHHHHHHHHHTTCEEEEEECSCHHH--HHHHHHHTCSEEEEC T ss_pred HHHHHHHHCCEEEEEEECCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCEEEEECCCHHH--HHHHHHHCCCEEEEC T ss_conf 899989851403899832576531223645412178789999999987287279996453144--778776166767650 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHH Q ss_conf 21110244435643366688999876654156235207898987799999736996388425999999999409999999 Q gi|254780438|r 162 TGPYGACYNNPQQERIFLNKLAITAQLAQKMDLQINAGHDLTIQNIPNLINAIPYISEISVGHAFAATALECGVKEAVFC 241 (261) Q Consensus 162 TG~Ya~a~~~~~~~~~el~~i~~aa~~A~~lgL~VnAGHgLn~~Nl~~~i~~Ip~I~EvsIGHaiIseAl~~GL~~aI~~ 241 (261) ||+||++|..+.+. .||++|+.+|.+|+++||+|||||||||+|++. +++||+|.||||||||||||||+||++||++ T Consensus 184 TG~YA~a~~~~~~~-~el~rl~~aA~~A~~lGL~VnAGHgLny~Nv~~-ia~ip~i~EvnIGHaiia~Al~~Gl~~AVr~ 261 (278) T 3gk0_A 184 TGRYADAHDAAEQQ-REFERIATGVDAGIALGLKVNAGHGLHYTNVQA-IAALPGIAELNIGHAIVAHAVFVGWDNAVRE 261 (278) T ss_dssp CHHHHTCSSHHHHH-HHHHHHHHHHHHHHHTTCEEEECTTCCTTTHHH-HHTCTTEEEEEECHHHHHHHHHHCHHHHHHH T ss_pred CHHHHHCCCCCHHH-HHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHH-HHCCCCCEEEECCHHHHHHHHHHHHHHHHHH T ss_conf 05554102220127-999999987778987098896578988656899-8528997698566999999999729999999 Q ss_pred HHHHHHHHHHHHHHHC Q ss_conf 9999974105655403 Q gi|254780438|r 242 FRRACGQHLDNTMRLT 257 (261) Q Consensus 242 ~~~ii~~~~~~~~~~~ 257 (261) |++++++.+.+++|+- T Consensus 262 m~~~l~~~r~~~~~~~ 277 (278) T 3gk0_A 262 MKAIMVAARVAALHGG 277 (278) T ss_dssp HHHHHHHHHHHHHC-- T ss_pred HHHHHHHHHHHHCCCC T ss_conf 9999999733023279 |
>1m5w_A (A:) Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} | Back alignment and structure |
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>3inp_A (A:) D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, structural genomics, center for structural genomics of infectious diseases; 2.05A {Francisella tularensis subsp} | Back alignment and structure |
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>1i60_A (A:) IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} | Back alignment and structure |
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>3cqj_A (A:) L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif, structural genomics; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A | Back alignment and structure |
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>1xi3_A (A:) Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} | Back alignment and structure |
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>3ctl_A (A:) D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* | Back alignment and structure |
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>2fli_A (A:) Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} | Back alignment and structure |
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>1q6o_A (A:) Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} | Back alignment and structure |
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>1h1y_A (A:) D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} | Back alignment and structure |
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>1xla_A (A:) D-xylose isomerase; isomerase(intramolecular oxidoreductse); 2.30A {Arthrobacter SP} | Back alignment and structure |
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>3c6c_A (A:) 3-keto-5-aminohexanoate cleavage enzyme; YP_293392.1, prokaryotic protein of unknown function (DUF849), structural genomics; HET: MSE; 1.72A {Ralstonia eutropha JMP134} | Back alignment and structure |
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>3e49_A (A:) Uncharacterized protein DUF849 with A TIM barrel fold; YP_556190.1; HET: MSE; 1.75A {Burkholderia xenovorans LB400} | Back alignment and structure |
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>3dx5_A (A:) Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structural genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis} | Back alignment and structure |
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>3chv_A (A:) Prokaryotic domain of unknown function (DUF849) with A TIM barrel fold; YP_164873.1; HET: MSE; 1.45A {Silicibacter pomeroyi dss-3} PDB: 3fa5_A | Back alignment and structure |
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>3inp_A (A:) D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, structural genomics, center for structural genomics of infectious diseases; 2.05A {Francisella tularensis subsp} | Back alignment and structure |
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>2q02_A (A:) Putative cytoplasmic protein; NP_463296.1, structural genomics, joint center for structural genomics, JCSG; 2.40A {Salmonella typhimurium LT2} | Back alignment and structure |
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>3lot_A (A:) Uncharacterized protein; protein of unknown function, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.89A {Archaeoglobus fulgidus} | Back alignment and structure |
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>3e02_A (A:) Uncharacterized protein DUF849; YP_555544.1, protein of unknown function (DUF849), structural genomics; HET: MSE; 1.90A {Burkholderia xenovorans LB400} | Back alignment and structure |
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>2qul_A (A:) D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A* | Back alignment and structure |
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>1ps9_A (A:1-333) 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} | Back alignment and structure |
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>1o94_A (A:1-343) Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} | Back alignment and structure |
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>3hgj_A (A:) Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} PDB: 3hf3_A* | Back alignment and structure |
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>1i60_A (A:) IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} | Back alignment and structure |
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>1gte_A (A:523-742,A:762-821) Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} | Back alignment and structure |
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>1xp3_A (A:) Endonuclease IV; NFO, DNA replication, DNA recombination, DNA repair, spine, structural genomics, structural proteomics in europe, hydrolase; 2.57A {Bacillus anthracis} | Back alignment and structure |
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>2zbt_A (A:) Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus HB8} PDB: 2iss_A* | Back alignment and structure |
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>1qtw_A (A:) Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear Zn cluster, hydrolase; 1.02A {Escherichia coli} | Back alignment and structure |
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