254780471

 Score =  171 bits (432), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 86/118 (72%), Positives = 101/118 (85%), Gaps = 2/118 (1%)

Query: 4   DNIHNMNMHSYGTKKQCLVGFILSLILTIIPFGIVMKGF-FLDKNIMCLTIVLCAIAQII 62
           D  HN   HS+GT+++ L+GFILSLILT IPFG+VM+G  FLDKN+  L IVLCAIAQII
Sbjct: 2   DYNHNKRTHSHGTRRESLIGFILSLILTSIPFGMVMQGSSFLDKNMTYLVIVLCAIAQII 61

Query: 63  VHLVFFLHMSTKVEDGWSIMAMIFTIIMVAICFVGSMWVMYHLNNNMMSM-EGMRSIH 119
           VHLV+FLHM+ KVEDGW++MAM+FTII++AICFVGSMWVMYHLN NMM M E MRSIH
Sbjct: 62  VHLVYFLHMNVKVEDGWNVMAMVFTIIIIAICFVGSMWVMYHLNYNMMPMDESMRSIH 119

Species: Candidatus Liberibacter solanacearum
Genus: Candidatus Liberibacter
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  113 bits (283), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 53/105 (50%), Positives = 74/105 (70%)

Query: 12  HSYGTKKQCLVGFILSLILTIIPFGIVMKGFFLDKNIMCLTIVLCAIAQIIVHLVFFLHM 71
           H +G+ K  + GFILS+ILT IPF +VM     +  +  + I+  A+ QI+VH+++FLHM
Sbjct: 25  HGHGSFKSYMTGFILSVILTAIPFWLVMTNALGNNQLTAIVIMAFAVVQIVVHMIYFLHM 84

Query: 72  STKVEDGWSIMAMIFTIIMVAICFVGSMWVMYHLNNNMMSMEGMR 116
           + KVE GWS++A+IFT+I+V I   GS+WVMYHLN NMM    MR
Sbjct: 85  TGKVEGGWSMLALIFTVIVVVIALSGSLWVMYHLNANMMPSHDMR 129

Species: Azorhizobium caulinodans
Genus: Azorhizobium
Family: Xanthobacteraceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  113 bits (282), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 52/107 (48%), Positives = 71/107 (66%)

Query: 7   HNMNMHSYGTKKQCLVGFILSLILTIIPFGIVMKGFFLDKNIMCLTIVLCAIAQIIVHLV 66
           H  +   +GT    L GF+L+ ILT IPF +VM G F       L I+  A+ QI+VHLV
Sbjct: 21  HEDDDGPHGTLASYLTGFVLAAILTAIPFWLVMDGVFASSRTTALVILAFAVVQIVVHLV 80

Query: 67  FFLHMSTKVEDGWSIMAMIFTIIMVAICFVGSMWVMYHLNNNMMSME 113
           +FLHM  K E GW+++A+IFT+++V I   GS+W+MYHLN+NMM M 
Sbjct: 81  YFLHMDAKSESGWNMLALIFTLVLVVITLSGSIWIMYHLNSNMMPMS 127

Species: Bordetella pertussis
Genus: Bordetella
Family: Alcaligenaceae
Order: Burkholderiales
Class: Betaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  113 bits (282), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 52/100 (52%), Positives = 72/100 (72%)

Query: 14  YGTKKQCLVGFILSLILTIIPFGIVMKGFFLDKNIMCLTIVLCAIAQIIVHLVFFLHMST 73
           +GT +  + GF+LS+ILT IPF +VM G F    +  + ++     QI+VH+VFFLHM+T
Sbjct: 26  HGTFRSYMTGFVLSIILTAIPFWLVMSGVFESPAVTAVLVMGLGAIQIVVHMVFFLHMNT 85

Query: 74  KVEDGWSIMAMIFTIIMVAICFVGSMWVMYHLNNNMMSME 113
           + E GW+IMA+IFT+I+VAI   GS+WVM+HLN NMM M 
Sbjct: 86  RSEGGWTIMALIFTLIIVAIALSGSLWVMHHLNTNMMPMS 125

Species: Rhizobium leguminosarum
Genus: Rhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  112 bits (280), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 56/103 (54%), Positives = 75/103 (72%), Gaps = 1/103 (0%)

Query: 15  GTKKQCLVGFILSLILTIIPFGIVMKGFFLDKNIMCLTIVLCAIAQIIVHLVFFLHMSTK 74
           GT++  L+GF LS++LT IPF +VM G  LDK +  L I+  A  Q++VH++FFLHM+TK
Sbjct: 20  GTRQGQLIGFGLSVVLTAIPFLLVMNGS-LDKQVSALIIMAFAAVQVVVHMIFFLHMNTK 78

Query: 75  VEDGWSIMAMIFTIIMVAICFVGSMWVMYHLNNNMMSMEGMRS 117
            E GW++MA+IFTIIMV I   GS+WVM+HL  NMM +  M S
Sbjct: 79  AEGGWTMMALIFTIIMVVIALSGSLWVMHHLTTNMMPVHEMGS 121

Species: Bradyrhizobium sp. ORS278
Genus: Bradyrhizobium
Family: Bradyrhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  112 bits (279), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 54/99 (54%), Positives = 74/99 (74%), Gaps = 3/99 (3%)

Query: 21  LVGFILSLILTIIPFGIVMKGFFLDKNIMCLTIVLCAIAQIIVHLVFFLHMSTKVEDGWS 80
           ++GF+LS++LT IPF +VM G    K I  L I+  A+ QI+VH+++FLHM+TK E+GWS
Sbjct: 28  MLGFVLSVVLTAIPFWLVMSGTLPSKQITALVIMAFAVVQIVVHMIYFLHMNTKSENGWS 87

Query: 81  IMAMIFTIIMVAICFVGSMWVMYHLNNNMMS---MEGMR 116
           +MA+IFTI+MV I   GS+WVM HLN+NMM    M GM+
Sbjct: 88  MMALIFTIVMVVIALSGSLWVMNHLNSNMMPIHQMSGMK 126

Species: Bradyrhizobium japonicum
Genus: Bradyrhizobium
Family: Bradyrhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  112 bits (279), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 57/115 (49%), Positives = 77/115 (66%), Gaps = 2/115 (1%)

Query: 4   DNIHNMNMHSYGTKKQCLVGFILSLILTIIPFGIVMKGFFLDKNIMCLTIVLCAIAQIIV 63
           D+ H  + H +G+ K  + GF+LS+ILT IPF +VM     DK I  + I+     QI+V
Sbjct: 9   DHGHGQDAHGHGSFKDYVTGFVLSVILTAIPFWLVMGDVLGDKLITGVVILGLGAVQIVV 68

Query: 64  HLVFFLHMSTKVEDGWSIMAMIFTIIMVAICFVGSMWVMYHLNNNMM--SMEGMR 116
           H+++FLHM+TK E GW+ MA+IFTI +V I   GS+WVM+HLN NMM  S E MR
Sbjct: 69  HMIYFLHMNTKSEGGWTFMALIFTITLVVITLCGSIWVMHHLNTNMMPISPEEMR 123

Species: Methylobacterium extorquens
Genus: Methylobacterium
Family: Methylobacteriaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  111 bits (278), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 52/101 (51%), Positives = 72/101 (71%)

Query: 13  SYGTKKQCLVGFILSLILTIIPFGIVMKGFFLDKNIMCLTIVLCAIAQIIVHLVFFLHMS 72
            +GT +  + GF+LS+ILT IPF +VM G F    +  + ++     QI+VH+VFFLHM+
Sbjct: 25  GHGTFRSYMTGFVLSVILTAIPFWLVMSGVFASPVLTAVLVMGLGAIQIVVHMVFFLHMN 84

Query: 73  TKVEDGWSIMAMIFTIIMVAICFVGSMWVMYHLNNNMMSME 113
           T+ E GW+IMA+IFT+I+VAI   GS+WVM+HLN NMM M 
Sbjct: 85  TRSEGGWTIMALIFTLIIVAIALSGSLWVMHHLNTNMMPMS 125

Species: Rhizobium leguminosarum
Genus: Rhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  110 bits (276), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 54/115 (46%), Positives = 78/115 (67%), Gaps = 2/115 (1%)

Query: 3   YDNIHNMNM--HSYGTKKQCLVGFILSLILTIIPFGIVMKGFFLDKNIMCLTIVLCAIAQ 60
           +D+ H  ++  H++GT K  L+GF LS++LT IPF +VM     +K    L I+  A  Q
Sbjct: 13  HDHGHEAHVAAHNHGTLKSYLIGFGLSVVLTAIPFWLVMGDVLGNKQATGLVIMAFAAVQ 72

Query: 61  IIVHLVFFLHMSTKVEDGWSIMAMIFTIIMVAICFVGSMWVMYHLNNNMMSMEGM 115
           I+VH+++FLHM+T  E+GW++MA+IFTI+MV I   GS+WVM+HL  NMM    M
Sbjct: 73  IVVHMIYFLHMTTAAEEGWTMMALIFTIVMVVIALAGSLWVMHHLTTNMMPAHDM 127

Species: Rhodopseudomonas palustris
Genus: Rhodopseudomonas
Family: Bradyrhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  110 bits (275), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 49/100 (49%), Positives = 70/100 (70%)

Query: 14  YGTKKQCLVGFILSLILTIIPFGIVMKGFFLDKNIMCLTIVLCAIAQIIVHLVFFLHMST 73
           +GT +  + GF LS++LT IPF +VM G F    +  + ++     QI+VH+VFFLHM+ 
Sbjct: 26  HGTFRSYMAGFALSVVLTAIPFWLVMAGVFASPAVTAVLVMAIGAVQIVVHMVFFLHMNP 85

Query: 74  KVEDGWSIMAMIFTIIMVAICFVGSMWVMYHLNNNMMSME 113
           + E GW++MA+IFT+I+VAI   GS+WVM+HLN NMM M 
Sbjct: 86  RSEGGWTMMALIFTLIIVAIALSGSLWVMHHLNTNMMPMS 125

Species: Rhizobium etli
Genus: Rhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score = 99.4 bits (248), Expect = 2e-22
 Identities = 49/98 (50%), Positives = 74/98 (75%), Gaps = 1/98 (1%)

Query: 13  SYGTKKQCLVGFILSLILTIIPFGIVMKGFFLDKNIMCLTIVLCAIAQIIVHLVFFLHMS 72
           S+G+ K  + GFILS+ILT+IPF +VM G      ++  TI+  A+ QI+VHLV FLHM+
Sbjct: 11  SHGSVKTYMTGFILSIILTVIPFWMVMTGAA-SPAVILGTILAMAVVQILVHLVCFLHMN 69

Query: 73  TKVEDGWSIMAMIFTIIMVAICFVGSMWVMYHLNNNMM 110
           TK ++GW++ A +FT++++AI  VGS+W+M++LN NMM
Sbjct: 70  TKSDEGWNMTAFVFTVLIIAILVVGSIWIMWNLNYNMM 107

Length = 109

 Score = 98.1 bits (245), Expect = 5e-22
 Identities = 46/97 (47%), Positives = 74/97 (76%), Gaps = 1/97 (1%)

Query: 14  YGTKKQCLVGFILSLILTIIPFGIVMKGFFLDKNIMCLTIVLCAIAQIIVHLVFFLHMST 73
           +G+ K  L+GF+LS+ILT IPFG+VM G    K +  + I++ A+ QI+VHLVFFLH++T
Sbjct: 1   HGSLKSYLIGFVLSVILTAIPFGLVMSGTL-SKGLTLVIIIVLAVVQILVHLVFFLHLNT 59

Query: 74  KVEDGWSIMAMIFTIIMVAICFVGSMWVMYHLNNNMM 110
             E  W++++++FTI+++ I   GS+W+M++LN+NMM
Sbjct: 60  SSEQRWNLISLLFTILIIFILIGGSIWIMHNLNHNMM 96

Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant. Length = 96

 Score = 82.6 bits (204), Expect = 2e-17
 Identities = 52/112 (46%), Positives = 76/112 (67%), Gaps = 1/112 (0%)

Query: 1   MKYDNIHNMNMHSYGTKKQCLVGFILSLILTIIPFGIVMKGFFLDKNIMCLTIVLCAIAQ 60
           M      N    S+G+ K  L+GF+LS+ILT+IPF +VM G      +  + I+  A+ Q
Sbjct: 1   MSSALHTNHGGASHGSLKSYLIGFVLSIILTLIPFWVVMTGAL-SSTVTLIIILGLAVIQ 59

Query: 61  IIVHLVFFLHMSTKVEDGWSIMAMIFTIIMVAICFVGSMWVMYHLNNNMMSM 112
           I+VHLV+FLHM+TK E  W++ A+IFTI ++ I  VGS+WVM++LN+NMM +
Sbjct: 60  ILVHLVYFLHMNTKSEGRWNMGALIFTIFIIVIVVVGSIWVMHNLNHNMMPL 111

Length = 111

 Score = 37.1 bits (86), Expect = 0.001
 Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 1/82 (1%)

Query: 21  LVGFILSLILTIIPFGIVMKGFFLDKNIMCLTIVLCAIAQIIVHLVFFLHMSTKVEDGWS 80
           + GFILSL+LT +   + +    L   +    I++ A  Q  + L+ F+H     +    
Sbjct: 10  VNGFILSLLLTFLALWVALYSD-LPLAMGLTIIIIFAFIQAGLQLIMFMHAGESEDGKVQ 68

Query: 81  IMAMIFTIIMVAICFVGSMWVM 102
           I  + ++  +  +   GS+WVM
Sbjct: 69  IYNIYYSAFIALVTVFGSLWVM 90

This family (QoxD) encodes subunit IV of the aa3-type quinone oxidase, one of several bacterial terminal oxidases. This complex couples oxidation of reduced quinones with the reduction of molecular oxygen to water and the pumping of protons to form a proton gradient utilized for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms in the active site. Length = 94

 Score = 86.4 bits (215), Expect = 2e-18
 Identities = 39/83 (46%), Positives = 60/83 (72%), Gaps = 1/83 (1%)

Query: 21  LVGFILSLILTIIPFGIVMKGFFLDKNIMCLTIVLCAIAQIIVHLVFFLHMSTKVEDGWS 80
           L+GF+LS+ILT+IPF +VM G    K+     I++ A+ QI+V LV+FLHM+T  E  W+
Sbjct: 2   LIGFVLSVILTLIPFWLVMAGVL-SKSTTLAIILVLAVVQIVVQLVYFLHMNTSSEGRWN 60

Query: 81  IMAMIFTIIMVAICFVGSMWVMY 103
           ++A+IFTI++  I   GS+W+M+
Sbjct: 61  LLALIFTILIAVIVVAGSLWIMH 83

Cytochrome c oxidase (COX) is a multi-subunit enzyme complex that catalyses the final step of electron transfer through the respiratory chain on the mitochondrial inner membrane. This family is composed of cytochrome c oxidase subunit 4 from prokaryotes. Length = 83

Probab=100.00  E-value=0  Score=277.76  Aligned_cols=108  Identities=46%  Similarity=0.814  Sum_probs=101.7

Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf             98788889877788852568999999999999999999806578846999999999999999999999704778765025
Q gi|254780471|r    1 MKYDNIHNMNMHSYGTKKQCLVGFILSLILTIIPFGIVMKGFFLDKNIMCLTIVLCAIAQIIVHLVFFLHMSTKVEDGWS   80 (119)
Q Consensus         1 m~~~~~h~~~~~~hgs~k~yliGFiLsiiLT~iaF~lV~~~~~~~~~~~~~~I~~~Av~Qi~VqL~~FLHl~~~~~~~~n   80 (119)
T Consensus         1 ~sh~~--~~~~~~Hgs~ksY~iGFvLsviLT~ipF~lVm~~~~-~~~~~~~~i~~~AvvQi~VhLvyFLHl~~~~~~~wn   77 (109)
T PRK10582          1 MSHST--DHGGASHGSVKTYMTGFILSIILTVIPFWMVMTGAA-SPAVILGTILAMAVVQILVHLVCFLHMNTKSDEGWN   77 (109)
T ss_pred             CCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
T ss_conf             98877--889988875999999999999999999999980767-821599999999999999999996105788765424


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             9999999999999999999999851130489
Q gi|254780471|r   81 IMAMIFTIIMVAICFVGSMWVMYHLNNNMMS  111 (119)
Q Consensus        81 ~~a~~Ft~~ii~iiv~GSiWIM~~l~~nMMp  111 (119)
T Consensus        78 ~~a~~Ft~~ii~I~v~GSiWIM~~ln~nMM~  108 (109)
T PRK10582         78 MTAFVFTVLIIAILVVGSIWIMWNLNYNMMM  108 (109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCHHHHCC
T ss_conf             8999999999999998699999620865117

Probab=100.00  E-value=0  Score=272.77  Aligned_cols=96  Identities=48%  Similarity=0.948  Sum_probs=93.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHCCC-CCC-HHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHH
Q ss_conf             88525689999999999999999998065-788-4699999999999999999999970477-87650259999999999
Q gi|254780471|r   14 YGTKKQCLVGFILSLILTIIPFGIVMKGF-FLD-KNIMCLTIVLCAIAQIIVHLVFFLHMST-KVEDGWSIMAMIFTIIM   90 (119)
Q Consensus        14 hgs~k~yliGFiLsiiLT~iaF~lV~~~~-~~~-~~~~~~~I~~~Av~Qi~VqL~~FLHl~~-~~~~~~n~~a~~Ft~~i   90 (119)
T Consensus         1 ~g~~ksYliGFvlsv~LT~~pF~~Vm~~~~~-sW~~~~~~~i~~~A~~Qi~VhlvfFLHl~~~~~~~rwNl~~l~Ft~li   79 (99)
T TIGR02847         1 HGSLKSYLIGFVLSVILTVIPFGLVMSGTVL-SWKGLTLVIIIVLAVVQILVHLVFFLHLNTKSSEQRWNLISLLFTILI   79 (99)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             9988617999999999999888999807547-628899999999999999988877302889895146899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHCCC
Q ss_conf             99999999999985113048
Q gi|254780471|r   91 VAICFVGSMWVMYHLNNNMM  110 (119)
Q Consensus        91 i~iiv~GSiWIM~~l~~nMM  110 (119)
T Consensus        80 i~i~v~GS~WIM~~ln~NMM   99 (99)
T TIGR02847        80 IFIVVGGSIWIMHNLNHNMM   99 (99)
T ss_pred             HHHHHHHHHHHHHHHCCCCC
T ss_conf             99999999999985102369

Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilise cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant..

Probab=100.00  E-value=8.7e-43  Score=255.37  Aligned_cols=111  Identities=47%  Similarity=0.780  Sum_probs=103.2

Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf             98788889877788852568999999999999999999806578846999999999999999999999704778765025
Q gi|254780471|r    1 MKYDNIHNMNMHSYGTKKQCLVGFILSLILTIIPFGIVMKGFFLDKNIMCLTIVLCAIAQIIVHLVFFLHMSTKVEDGWS   80 (119)
Q Consensus         1 m~~~~~h~~~~~~hgs~k~yliGFiLsiiLT~iaF~lV~~~~~~~~~~~~~~I~~~Av~Qi~VqL~~FLHl~~~~~~~~n   80 (119)
T Consensus         1 Mss~~~~~~~~a~H~s~k~y~iGFvLsIiLT~ipF~~vm~~~~-~~~~~~~~i~~lA~iQi~vqLvyFlHM~~~~eg~w~   79 (111)
T COG3125           1 MSSALHTNHGGASHGSLKSYLIGFVLSIILTLIPFWVVMTGAL-SSTVTLIIILGLAVIQILVHLVYFLHMNTKSEGRWN   79 (111)
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE
T ss_conf             9976668876454335899999999999999999999983464-434699999999999999999987304688666641


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf             99999999999999999999998511304895
Q gi|254780471|r   81 IMAMIFTIIMVAICFVGSMWVMYHLNNNMMSM  112 (119)
Q Consensus        81 ~~a~~Ft~~ii~iiv~GSiWIM~~l~~nMMp~  112 (119)
T Consensus        80 ~~~~iFt~~i~vivvvGS~Wvm~~~n~~mm~~  111 (111)
T COG3125          80 MGALIFTIFIIVIVVVGSIWVMHNLNHNMMPL  111 (111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             19999999999999999999998163035899

Probab=99.97  E-value=1.6e-31  Score=193.14  Aligned_cols=83  Identities=47%  Similarity=0.912  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             89999999999999999998065788469999999999999999999997047787650259999999999999999999
Q gi|254780471|r   20 CLVGFILSLILTIIPFGIVMKGFFLDKNIMCLTIVLCAIAQIIVHLVFFLHMSTKVEDGWSIMAMIFTIIMVAICFVGSM   99 (119)
Q Consensus        20 yliGFiLsiiLT~iaF~lV~~~~~~~~~~~~~~I~~~Av~Qi~VqL~~FLHl~~~~~~~~n~~a~~Ft~~ii~iiv~GSi   99 (119)
T Consensus         1 y~iGFilsiiLT~i~F~~V~~~~~-~~~~~~~~i~~~A~vQi~vqL~~FLHm~~~~~~~wn~~~~~f~~~i~~i~v~Gsl   79 (83)
T pfam03626         1 YLIGFVLSVILTLIPFWLVMAGVL-SKSTTLAIILVLAVVQIVVQLVYFLHMNTSSEGRWNLLALIFTILIAVIVVAGSL   79 (83)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHEE
T ss_conf             944999999999999999996658-8508999999999999999999851247887763179999999999999877222


Q ss_pred             HHHH
Q ss_conf             9998
Q gi|254780471|r  100 WVMY  103 (119)
Q Consensus       100 WIM~  103 (119)
T Consensus        80 WIm~   83 (83)
T pfam03626        80 WIMH   83 (83)
T ss_pred             EEEC
T ss_conf             5659

Cytochrome c oxidase (COX) is a multi-subunit enzyme complex that catalyses the final step of electron transfer through the respiratory chain on the mitochondrial inner membrane. This family is composed of cytochrome c oxidase subunit 4 from prokaryotes.

Probab=99.91  E-value=1.5e-23  Score=149.07  Aligned_cols=92  Identities=25%  Similarity=0.423  Sum_probs=83.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HHHHHHHHH
Q ss_conf             8885256899999999999999999980657884699999999999999999999970477876502599-999999999
Q gi|254780471|r   13 SYGTKKQCLVGFILSLILTIIPFGIVMKGFFLDKNIMCLTIVLCAIAQIIVHLVFFLHMSTKVEDGWSIM-AMIFTIIMV   91 (119)
Q Consensus        13 ~hgs~k~yliGFiLsiiLT~iaF~lV~~~~~~~~~~~~~~I~~~Av~Qi~VqL~~FLHl~~~~~~~~n~~-a~~Ft~~ii   91 (119)
T Consensus         2 ~~~FP~kHv~GFilSL~LT~~AL~Va~~s~l~-~~~~~tIi~~~A~IQA~LQL~~FMH~~E~~~gk~q~~~n~~Y~~FiA   80 (95)
T TIGR02901         2 RELFPWKHVVGFILSLILTLLALWVALYSDLS-LKVGLTIIIVFAIIQASLQLIVFMHVNESEDGKVQIYLNIVYAFFIA   80 (95)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             88871899999999999999999999996594-35656888889999999999988046757574057899999999999


Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             99999999999851
Q gi|254780471|r   92 AICFVGSMWVMYHL  105 (119)
Q Consensus        92 ~iiv~GSiWIM~~l  105 (119)
T Consensus        81 ~vtV~Gs~w~m~~g   94 (95)
T TIGR02901        81 LVTVFGSLWVMVWG   94 (95)
T ss_pred             HHHHHHHHHHHHHC
T ss_conf             99999999998863

This complex couples oxidation of reduced quinones to the reduction of molecular oxygen to water, and the pumping of protons to form a proton gradient utilised for ATP production. aa3-type oxidases contain two heme a cofactors as well as copper atoms in the active site.; GO: 0016682 oxidoreductase activity acting on diphenols and related substances as donors oxygen as acceptor, 0042773 ATP synthesis coupled electron transport, 0016021 integral to membrane.

Probab=99.82  E-value=5.9e-20  Score=129.21  Aligned_cols=80  Identities=30%  Similarity=0.388  Sum_probs=70.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             85256899999999999999999980657884699999999999999999999970477876502599999999999999
Q gi|254780471|r   15 GTKKQCLVGFILSLILTIIPFGIVMKGFFLDKNIMCLTIVLCAIAQIIVHLVFFLHMSTKVEDGWSIMAMIFTIIMVAIC   94 (119)
Q Consensus        15 gs~k~yliGFiLsiiLT~iaF~lV~~~~~~~~~~~~~~I~~~Av~Qi~VqL~~FLHl~~~~~~~~n~~a~~Ft~~ii~ii   94 (119)
T Consensus        23 eEMk~Q~~~F~LMI~lTliAF~aV~~~e~-~~wFviPfillLAavQvaFQlyYFMHM~~KGHE~Pa~f--iYgGvfV~~l   99 (110)
T TIGR02908        23 EEMKKQVVAFALMILLTLIAFLAVALDEV-DKWFVIPFILLLAAVQVAFQLYYFMHMKDKGHEVPALF--IYGGVFVALL   99 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH--HHHHHHHHHH
T ss_conf             99899999999999999999999877324-54106989999999999999888872068997500799--9999999999


Q ss_pred             HHH
Q ss_conf             999
Q gi|254780471|r   95 FVG   97 (119)
Q Consensus        95 v~G   97 (119)
T Consensus       100 ~vl  102 (110)
T TIGR02908       100 VVL  102 (110)
T ss_pred             HHH
T ss_conf             998

.

Probab=91.43  E-value=0.92  Score=23.15  Aligned_cols=79  Identities=13%  Similarity=0.205  Sum_probs=43.4

Q ss_pred             CCC-HHHHHHHHHHHH---HHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf             885-256899999999---9999999999806-57884699999999999999999999970477876502599999999
Q gi|254780471|r   14 YGT-KKQCLVGFILSL---ILTIIPFGIVMKG-FFLDKNIMCLTIVLCAIAQIIVHLVFFLHMSTKVEDGWSIMAMIFTI   88 (119)
Q Consensus        14 hgs-~k~yliGFiLsi---iLT~iaF~lV~~~-~~~~~~~~~~~I~~~Av~Qi~VqL~~FLHl~~~~~~~~n~~a~~Ft~   88 (119)
T Consensus         3 Hi~~~~~~~~v~~~L~vL~~lTv~A~~~~~~LihiPG-~La~~val~IA~~KA~Lv~lyFMHl~~~~~l~rl~~a~af~~   81 (96)
T TIGR02229         3 HISDLATYLKVWLALLVLTALTVAASFFELELIHIPG-ALAVVVALAIAVVKAVLVVLYFMHLKRESKLLRLVVAVAFAI   81 (96)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHH
T ss_conf             8777347999999999999999999998433302587-689999999999999884453100110035899999999999


Q ss_pred             HHHHH
Q ss_conf             99999
Q gi|254780471|r   89 IMVAI   93 (119)
Q Consensus        89 ~ii~i   93 (119)
T Consensus        82 Lailf   86 (96)
T TIGR02229        82 LAILF   86 (96)
T ss_pred             HHHHH
T ss_conf             99999

.