254780471
cytochrome o ubiquinol oxidase subunit IV
GeneID in NCBI database: | 8209460 | Locus tag: | CLIBASIA_01780 |
Protein GI in NCBI database: | 254780471 | Protein Accession: | YP_003064884.1 |
Gene range: | -(393583, 393942) | Protein Length: | 119aa |
Gene description: | cytochrome o ubiquinol oxidase subunit IV | ||
COG prediction: | [C] Heme/copper-type cytochrome/quinol oxidase, subunit 4 | ||
KEGG prediction: | cyoD; cytochrome o ubiquinol oxidase subunit IV; K02300 cytochrome o ubiquinol oxidase operon protein cyoD | ||
SEED prediction: | Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) | ||
Pathway involved in KEGG: | Oxidative phosphorylation [PATH:las00190] | ||
Subsystem involved in SEED: | Terminal cytochrome O ubiquinol oxidase | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 119 | cytochrome o ubiquinol oxidase subunit IV [Candidatus L | |||
315122073 | 119 | cytochrome o ubiquinol oxidase subunit IV [Candidatus L | 1 | 4e-41 | |
158423725 | 132 | cytochrome o ubiquinol oxidase subunit IV [Azorhizobium | 1 | 8e-24 | |
33593692 | 135 | cytochrome ubiquinol oxidase subunit IV [Bordetella per | 1 | 9e-24 | |
241667024 | 133 | cytochrome o ubiquinol oxidase subunit IV [Rhizobium le | 1 | 1e-23 | |
146338788 | 123 | cytochrome o ubiquinol oxidase subunit IV [Bradyrhizobi | 1 | 1e-23 | |
27375263 | 126 | cytochrome O ubiquinol oxidase subunit IV [Bradyrhizobi | 1 | 2e-23 | |
163853731 | 126 | cytochrome o ubiquinol oxidase subunit IV [Methylobacte | 1 | 2e-23 | |
116255239 | 133 | putative cytochrome o ubiquinol oxidase protein CyoD [R | 1 | 3e-23 | |
91975078 | 130 | cytochrome C oxidase subunit IV [Rhodopseudomonas palus | 1 | 5e-23 | |
86360305 | 133 | cytochrome O ubiquinol oxidase, subunit IV protein [Rhi | 1 | 7e-23 |
>gi|315122073|ref|YP_004062562.1| cytochrome o ubiquinol oxidase subunit IV [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 119 | Back alignment and organism information |
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Score = 171 bits (432), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 86/118 (72%), Positives = 101/118 (85%), Gaps = 2/118 (1%) Query: 4 DNIHNMNMHSYGTKKQCLVGFILSLILTIIPFGIVMKGF-FLDKNIMCLTIVLCAIAQII 62 D HN HS+GT+++ L+GFILSLILT IPFG+VM+G FLDKN+ L IVLCAIAQII Sbjct: 2 DYNHNKRTHSHGTRRESLIGFILSLILTSIPFGMVMQGSSFLDKNMTYLVIVLCAIAQII 61 Query: 63 VHLVFFLHMSTKVEDGWSIMAMIFTIIMVAICFVGSMWVMYHLNNNMMSM-EGMRSIH 119 VHLV+FLHM+ KVEDGW++MAM+FTII++AICFVGSMWVMYHLN NMM M E MRSIH Sbjct: 62 VHLVYFLHMNVKVEDGWNVMAMVFTIIIIAICFVGSMWVMYHLNYNMMPMDESMRSIH 119 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|158423725|ref|YP_001525017.1| cytochrome o ubiquinol oxidase subunit IV [Azorhizobium caulinodans ORS 571] Length = 132 | Back alignment and organism information |
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>gi|33593692|ref|NP_881336.1| cytochrome ubiquinol oxidase subunit IV [Bordetella pertussis Tohama I] Length = 135 | Back alignment and organism information |
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>gi|241667024|ref|YP_002985108.1| cytochrome o ubiquinol oxidase subunit IV [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 133 | Back alignment and organism information |
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>gi|146338788|ref|YP_001203836.1| cytochrome o ubiquinol oxidase subunit IV [Bradyrhizobium sp. ORS278] Length = 123 | Back alignment and organism information |
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>gi|27375263|ref|NP_766792.1| cytochrome O ubiquinol oxidase subunit IV [Bradyrhizobium japonicum USDA 110] Length = 126 | Back alignment and organism information |
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>gi|163853731|ref|YP_001641774.1| cytochrome o ubiquinol oxidase subunit IV [Methylobacterium extorquens PA1] Length = 126 | Back alignment and organism information |
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>gi|116255239|ref|YP_771072.1| putative cytochrome o ubiquinol oxidase protein CyoD [Rhizobium leguminosarum bv. viciae 3841] Length = 133 | Back alignment and organism information |
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>gi|91975078|ref|YP_567737.1| cytochrome C oxidase subunit IV [Rhodopseudomonas palustris BisB5] Length = 130 | Back alignment and organism information |
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>gi|86360305|ref|YP_472193.1| cytochrome O ubiquinol oxidase, subunit IV protein [Rhizobium etli CFN 42] Length = 133 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 119 | cytochrome o ubiquinol oxidase subunit IV [Candidatus L | ||
PRK10582 | 109 | PRK10582, PRK10582, cytochrome o ubiquinol oxidase subu | 2e-22 | |
TIGR02847 | 96 | TIGR02847, CyoD, cytochrome o ubiquinol oxidase subunit | 5e-22 | |
COG3125 | 111 | COG3125, CyoD, Heme/copper-type cytochrome/quinol oxida | 2e-17 | |
TIGR02901 | 94 | TIGR02901, QoxD, cytochrome aa3 quinol oxidase, subunit | 0.001 | |
pfam03626 | 83 | pfam03626, COX4_pro, Prokaryotic Cytochrome C oxidase s | 2e-18 |
>gnl|CDD|182568 PRK10582, PRK10582, cytochrome o ubiquinol oxidase subunit IV; Provisional | Back alignment and domain information |
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>gnl|CDD|131894 TIGR02847, CyoD, cytochrome o ubiquinol oxidase subunit IV | Back alignment and domain information |
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>gnl|CDD|32939 COG3125, CyoD, Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Energy production and conversion] | Back alignment and domain information |
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>gnl|CDD|131947 TIGR02901, QoxD, cytochrome aa3 quinol oxidase, subunit IV | Back alignment and domain information |
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>gnl|CDD|146325 pfam03626, COX4_pro, Prokaryotic Cytochrome C oxidase subunit IV | Back alignment and domain information |
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Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 119 | cytochrome o ubiquinol oxidase subunit IV [Candidatus L | ||
PRK10582 | 109 | cytochrome o ubiquinol oxidase subunit IV; Provisional | 100.0 | |
TIGR02847 | 99 | CyoD cytochrome o ubiquinol oxidase subunit IV; InterPr | 100.0 | |
COG3125 | 111 | CyoD Heme/copper-type cytochrome/quinol oxidase, subuni | 100.0 | |
pfam03626 | 83 | COX4_pro Prokaryotic Cytochrome C oxidase subunit IV. C | 99.97 | |
TIGR02901 | 95 | QoxD cytochrome aa3 quinol oxidase, subunit IV; InterPr | 99.91 | |
TIGR02908 | 110 | CoxD_Bacillus cytochrome c oxidase, subunit IV; InterPr | 99.82 | |
TIGR02229 | 96 | caa3_sub_IV caa(3)-type oxidase, subunit IV; InterPro: | 91.43 |
>PRK10582 cytochrome o ubiquinol oxidase subunit IV; Provisional | Back alignment and domain information |
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>TIGR02847 CyoD cytochrome o ubiquinol oxidase subunit IV; InterPro: IPR014210 This entry represents subunit 4 (CyoD) of cytochrome o terminal oxidase complex, which is a component of the aerobic respiratory chain that reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane | Back alignment and domain information |
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>COG3125 CyoD Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Energy production and conversion] | Back alignment and domain information |
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>pfam03626 COX4_pro Prokaryotic Cytochrome C oxidase subunit IV | Back alignment and domain information |
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>TIGR02901 QoxD cytochrome aa3 quinol oxidase, subunit IV; InterPro: IPR014250 This entry represents subunit IV of the aa3-type quinone oxidase (QoxD), one of several bacterial terminal oxidases | Back alignment and domain information |
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>TIGR02908 CoxD_Bacillus cytochrome c oxidase, subunit IV; InterPro: IPR014257 This entry represents a small clade of cytochrome oxidase subunit IV sequences found in the Bacillaceae | Back alignment and domain information |
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>TIGR02229 caa3_sub_IV caa(3)-type oxidase, subunit IV; InterPro: IPR011743 This entry represents a small set of proteins with weak similarity to the sequences in Pfam family IPR005171 from INTERPRO, which describes the cytochrome C oxidase subunit IV | Back alignment and domain information |
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Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
No homologous structure with e-value below 0.005
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 90.00
Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 90.00
Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
No hit with e-value below 0.005
Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
No hit with probability higher than 90.00