254780480
2'-deoxycytidine 5'-triphosphate deaminase
GeneID in NCBI database: | 8209469 | Locus tag: | CLIBASIA_01825 |
Protein GI in NCBI database: | 254780480 | Protein Accession: | YP_003064893.1 |
Gene range: | -(401817, 402920) | Protein Length: | 367aa |
Gene description: | 2'-deoxycytidine 5'-triphosphate deaminase | ||
COG prediction: | none | ||
KEGG prediction: | 2'-deoxycytidine 5'-triphosphate deaminase (EC:3.5.4.13); K01494 dCTP deaminase [EC:3.5.4.13] | ||
SEED prediction: | Deoxycytidine triphosphate deaminase (EC 3.5.4.13) | ||
Pathway involved in KEGG: | Pyrimidine metabolism [PATH:las00240] | ||
Subsystem involved in SEED: | pyrimidine conversions | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 367 | 2'-deoxycytidine 5'-triphosphate deaminase [Candidatus | |||
315122064 | 362 | 2'-deoxycytidine 5'-triphosphate deaminase [Candidatus | 1 | 1e-129 | |
255597193 | 363 | conserved hypothetical protein [Ricinus communis] Lengt | 1 | 1e-113 | |
222084791 | 363 | deoxycytidine triphosphate deaminase [Agrobacterium rad | 1 | 1e-113 | |
227820742 | 365 | 2'-deoxycytidine 5'-triphosphate deaminase [Sinorhizobi | 1 | 1e-112 | |
307307013 | 365 | 2-deoxycytidine 5-triphosphate deaminase [Sinorhizobium | 1 | 1e-112 | |
190890225 | 363 | deoxycytidine triphosphate deaminase [Rhizobium etli CI | 1 | 1e-112 | |
218675129 | 364 | 2'-deoxycytidine 5'-triphosphate deaminase [Rhizobium e | 1 | 1e-112 | |
15964276 | 365 | 2'-deoxycytidine 5'-triphosphate deaminase [Sinorhizobi | 1 | 1e-112 | |
327190084 | 381 | deoxycytidine triphosphate deaminase protein [Rhizobium | 1 | 1e-112 | |
256159009 | 363 | 2'-deoxycytidine 5'-triphosphate deaminase [Brucella ce | 1 | 1e-112 |
>gi|315122064|ref|YP_004062553.1| 2'-deoxycytidine 5'-triphosphate deaminase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 362 | Back alignment and organism information |
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Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust. Identities = 236/367 (64%), Positives = 284/367 (77%), Gaps = 5/367 (1%) Query: 1 MNKGVLPDKAIATLAERGDIVSEHPLEKNQIQPASIDLRLSSKAYRVRASFLPNIDGLVS 60 M GVLPDK I L G+I+++ PL ++Q+QP+S+DLRLS+KAYRV ASFLP +GLV Sbjct: 1 MGIGVLPDKFITELVANGEIIADCPLAEDQVQPSSLDLRLSAKAYRVSASFLPKDEGLVL 60 Query: 61 DKIKHFKLREIDLSGGTVLDANCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFARVIG 120 D+I+ FKL EIDL G VL+ NCVYIVPLMESL L+ G+ AYANPKSSIGRIDV ARV+ Sbjct: 61 DRIERFKLHEIDLLEGAVLEENCVYIVPLMESLKLQGGMYAYANPKSSIGRIDVLARVLV 120 Query: 121 DRSQEFDSISPNYSGPLYLEILPRTFPIVVRVGSRLSQIRFVKERKFCSQEELSALHELS 180 DR+ +FD I NY G LYLEIL +FPI VR GSRLSQ+RF+ +R+ S+E+L LH+ Sbjct: 121 DRNSQFDCIPANYCGRLYLEILSLSFPITVRTGSRLSQLRFMYKREVFSKEKLLLLHQEK 180 Query: 181 PLVQDGLRDFSGKGVALSVDLKGNEIGKKSIIGYRAKRHTAAIDVDSENKYDESDFWDPL 240 PL+Q G+ DFS +G+ALSV+LKG E IIGYR+KRHTAAIDVDS+ YD +DFWDPL Sbjct: 181 PLIQGGIVDFSDEGIALSVNLKG-EGNSGQIIGYRSKRHTAAIDVDSKKAYDIADFWDPL 239 Query: 241 FSWDAPEGQFILDPNEFYIFASREFIQIPPSLVAEMIPYDHSIGEFRVHYAGFFDPGFGC 300 +S + +L PNEFYI AS+EF+QIPP +VAEM PY+ IGEFRVHYAGFFDPGFG Sbjct: 240 YSQEG--NGLVLYPNEFYILASQEFVQIPPLIVAEMCPYNPLIGEFRVHYAGFFDPGFG- 296 Query: 301 VLPQEVGAKAVLEVRSSVPFVLEHGQIIGRLKYESMDGEPERLYGEARGSHYQSQALKLS 360 P+ GAKAVLEVRS VPF LEH QIIGRL+YESM EPE LYG+ RGS+YQ+Q LKLS Sbjct: 297 -YPEGSGAKAVLEVRSYVPFFLEHSQIIGRLRYESMMKEPENLYGDTRGSNYQAQGLKLS 355 Query: 361 KHFHQTQ 367 KHF + Sbjct: 356 KHFRAIE 362 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|255597193|ref|XP_002536717.1| conserved hypothetical protein [Ricinus communis] Length = 363 | Back alignment and organism information |
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>gi|222084791|ref|YP_002543320.1| deoxycytidine triphosphate deaminase [Agrobacterium radiobacter K84] Length = 363 | Back alignment and organism information |
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>gi|227820742|ref|YP_002824712.1| 2'-deoxycytidine 5'-triphosphate deaminase [Sinorhizobium fredii NGR234] Length = 365 | Back alignment and organism information |
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>gi|307307013|ref|ZP_07586752.1| 2-deoxycytidine 5-triphosphate deaminase [Sinorhizobium meliloti BL225C] Length = 365 | Back alignment and organism information |
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>gi|190890225|ref|YP_001976767.1| deoxycytidine triphosphate deaminase [Rhizobium etli CIAT 652] Length = 363 | Back alignment and organism information |
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>gi|218675129|ref|ZP_03524798.1| 2'-deoxycytidine 5'-triphosphate deaminase [Rhizobium etli GR56] Length = 364 | Back alignment and organism information |
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>gi|15964276|ref|NP_384629.1| 2'-deoxycytidine 5'-triphosphate deaminase [Sinorhizobium meliloti 1021] Length = 365 | Back alignment and organism information |
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>gi|327190084|gb|EGE57200.1| deoxycytidine triphosphate deaminase protein [Rhizobium etli CNPAF512] Length = 381 | Back alignment and organism information |
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>gi|256159009|ref|ZP_05456846.1| 2'-deoxycytidine 5'-triphosphate deaminase [Brucella ceti M490/95/1] Length = 363 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 367 | 2'-deoxycytidine 5'-triphosphate deaminase [Candidatus | ||
PRK07559 | 365 | PRK07559, PRK07559, 2'-deoxycytidine 5'-triphosphate de | 1e-177 | |
pfam06559 | 366 | pfam06559, DCD, 2'-deoxycytidine 5'-triphosphate deamin | 1e-142 | |
TIGR02274 | 179 | TIGR02274, dCTP_deam, deoxycytidine triphosphate deamin | 3e-11 | |
COG0717 | 183 | COG0717, Dcd, Deoxycytidine deaminase [Nucleotide trans | 3e-10 | |
PRK00416 | 177 | PRK00416, dcd, deoxycytidine triphosphate deaminase; Re | 7e-04 | |
cd07557 | 92 | cd07557, trimeric_dUTPase, Trimeric dUTP diphosphatases | 6e-08 | |
PRK00416 | 177 | PRK00416, dcd, deoxycytidine triphosphate deaminase; Re | 1e-04 | |
TIGR02274 | 179 | TIGR02274, dCTP_deam, deoxycytidine triphosphate deamin | 3e-07 | |
COG0717 | 183 | COG0717, Dcd, Deoxycytidine deaminase [Nucleotide trans | 2e-24 | |
cd07557 | 92 | cd07557, trimeric_dUTPase, Trimeric dUTP diphosphatases | 1e-06 |
>gnl|CDD|181028 PRK07559, PRK07559, 2'-deoxycytidine 5'-triphosphate deaminase; Provisional | Back alignment and domain information |
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>gnl|CDD|148267 pfam06559, DCD, 2'-deoxycytidine 5'-triphosphate deaminase (DCD) | Back alignment and domain information |
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>gnl|CDD|162793 TIGR02274, dCTP_deam, deoxycytidine triphosphate deaminase | Back alignment and domain information |
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>gnl|CDD|31061 COG0717, Dcd, Deoxycytidine deaminase [Nucleotide transport and metabolism] | Back alignment and domain information |
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>gnl|CDD|179014 PRK00416, dcd, deoxycytidine triphosphate deaminase; Reviewed | Back alignment and domain information |
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>gnl|CDD|143638 cd07557, trimeric_dUTPase, Trimeric dUTP diphosphatases | Back alignment and domain information |
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>gnl|CDD|179014 PRK00416, dcd, deoxycytidine triphosphate deaminase; Reviewed | Back alignment and domain information |
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>gnl|CDD|162793 TIGR02274, dCTP_deam, deoxycytidine triphosphate deaminase | Back alignment and domain information |
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>gnl|CDD|31061 COG0717, Dcd, Deoxycytidine deaminase [Nucleotide transport and metabolism] | Back alignment and domain information |
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>gnl|CDD|143638 cd07557, trimeric_dUTPase, Trimeric dUTP diphosphatases | Back alignment and domain information |
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Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 367 | 2'-deoxycytidine 5'-triphosphate deaminase [Candidatus | ||
pfam06559 | 366 | DCD 2'-deoxycytidine 5'-triphosphate deaminase (DCD). T | 100.0 | |
PRK07559 | 366 | 2'-deoxycytidine 5'-triphosphate deaminase; Provisional | 100.0 | |
TIGR02274 | 198 | dCTP_deam deoxycytidine triphosphate deaminase; InterPr | 100.0 | |
PHA01707 | 158 | dut 2'-deoxyuridine 5'-triphosphatase | 100.0 | |
PRK00416 | 174 | dcd deoxycytidine triphosphate deaminase; Reviewed | 100.0 | |
COG0717 | 183 | Dcd Deoxycytidine deaminase [Nucleotide transport and m | 100.0 | |
PRK02253 | 159 | deoxyuridine 5'-triphosphate nucleotidohydrolase; Provi | 99.98 | |
pfam06559 | 366 | DCD 2'-deoxycytidine 5'-triphosphate deaminase (DCD). T | 98.45 | |
PRK07559 | 366 | 2'-deoxycytidine 5'-triphosphate deaminase; Provisional | 98.33 | |
TIGR02274 | 198 | dCTP_deam deoxycytidine triphosphate deaminase; InterPr | 100.0 | |
COG0717 | 183 | Dcd Deoxycytidine deaminase [Nucleotide transport and m | 100.0 | |
PHA01707 | 158 | dut 2'-deoxyuridine 5'-triphosphatase | 99.96 | |
PRK00416 | 174 | dcd deoxycytidine triphosphate deaminase; Reviewed | 99.95 | |
PRK02253 | 159 | deoxyuridine 5'-triphosphate nucleotidohydrolase; Provi | 99.93 | |
cd07557 | 92 | trimeric_dUTPase Trimeric dUTP diphosphatases. Trimeric | 99.78 | |
pfam00692 | 129 | dUTPase dUTPase. dUTPase hydrolyses dUTP to dUMP and py | 99.4 | |
PRK00601 | 149 | dut deoxyuridine 5'-triphosphate nucleotidohydrolase; P | 99.22 | |
PRK13956 | 147 | dut deoxyuridine 5'-triphosphate nucleotidohydrolase; P | 98.89 | |
TIGR00576 | 151 | dut dUTP diphosphatase; InterPro: IPR008181 Synonym(s): | 98.88 | |
PTZ00143 | 155 | deoxyuridine 5'-triphosphate nucleotidohydrolase; Provi | 98.78 | |
COG0756 | 148 | Dut dUTPase [Nucleotide transport and metabolism] | 98.77 | |
KOG3370 | 140 | consensus | 94.43 | |
cd07557 | 92 | trimeric_dUTPase Trimeric dUTP diphosphatases. Trimeric | 99.35 | |
pfam00692 | 129 | dUTPase dUTPase. dUTPase hydrolyses dUTP to dUMP and py | 98.86 | |
PRK00601 | 149 | dut deoxyuridine 5'-triphosphate nucleotidohydrolase; P | 98.65 | |
TIGR00576 | 151 | dut dUTP diphosphatase; InterPro: IPR008181 Synonym(s): | 98.59 | |
COG0756 | 148 | Dut dUTPase [Nucleotide transport and metabolism] | 98.4 | |
PRK13956 | 147 | dut deoxyuridine 5'-triphosphate nucleotidohydrolase; P | 98.37 | |
KOG3370 | 140 | consensus | 93.64 | |
PTZ00143 | 155 | deoxyuridine 5'-triphosphate nucleotidohydrolase; Provi | 97.47 |
>pfam06559 DCD 2'-deoxycytidine 5'-triphosphate deaminase (DCD) | Back alignment and domain information |
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>PRK07559 2'-deoxycytidine 5'-triphosphate deaminase; Provisional | Back alignment and domain information |
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>TIGR02274 dCTP_deam deoxycytidine triphosphate deaminase; InterPro: IPR011962 Members of this family include the Escherichia coli monofunctional deoxycytidine triphosphate deaminase (dCTP deaminase) and a Methanocaldococcus jannaschii bifunctional dCTP deaminase (3 | Back alignment and domain information |
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>PHA01707 dut 2'-deoxyuridine 5'-triphosphatase | Back alignment and domain information |
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>PRK00416 dcd deoxycytidine triphosphate deaminase; Reviewed | Back alignment and domain information |
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>COG0717 Dcd Deoxycytidine deaminase [Nucleotide transport and metabolism] | Back alignment and domain information |
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>PRK02253 deoxyuridine 5'-triphosphate nucleotidohydrolase; Provisional | Back alignment and domain information |
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>pfam06559 DCD 2'-deoxycytidine 5'-triphosphate deaminase (DCD) | Back alignment and domain information |
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>PRK07559 2'-deoxycytidine 5'-triphosphate deaminase; Provisional | Back alignment and domain information |
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>TIGR02274 dCTP_deam deoxycytidine triphosphate deaminase; InterPro: IPR011962 Members of this family include the Escherichia coli monofunctional deoxycytidine triphosphate deaminase (dCTP deaminase) and a Methanocaldococcus jannaschii bifunctional dCTP deaminase (3 | Back alignment and domain information |
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>COG0717 Dcd Deoxycytidine deaminase [Nucleotide transport and metabolism] | Back alignment and domain information |
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>PHA01707 dut 2'-deoxyuridine 5'-triphosphatase | Back alignment and domain information |
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>PRK00416 dcd deoxycytidine triphosphate deaminase; Reviewed | Back alignment and domain information |
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>PRK02253 deoxyuridine 5'-triphosphate nucleotidohydrolase; Provisional | Back alignment and domain information |
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>cd07557 trimeric_dUTPase Trimeric dUTP diphosphatases | Back alignment and domain information |
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>pfam00692 dUTPase dUTPase | Back alignment and domain information |
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>PRK00601 dut deoxyuridine 5'-triphosphate nucleotidohydrolase; Provisional | Back alignment and domain information |
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>PRK13956 dut deoxyuridine 5'-triphosphate nucleotidohydrolase; Provisional | Back alignment and domain information |
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>TIGR00576 dut dUTP diphosphatase; InterPro: IPR008181 Synonym(s): dUTP diphosphatase, Deoxyuridine-triphosphatase | Back alignment and domain information |
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>PTZ00143 deoxyuridine 5'-triphosphate nucleotidohydrolase; Provisional | Back alignment and domain information |
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>COG0756 Dut dUTPase [Nucleotide transport and metabolism] | Back alignment and domain information |
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>KOG3370 consensus | Back alignment and domain information |
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>cd07557 trimeric_dUTPase Trimeric dUTP diphosphatases | Back alignment and domain information |
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>pfam00692 dUTPase dUTPase | Back alignment and domain information |
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>PRK00601 dut deoxyuridine 5'-triphosphate nucleotidohydrolase; Provisional | Back alignment and domain information |
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>TIGR00576 dut dUTP diphosphatase; InterPro: IPR008181 Synonym(s): dUTP diphosphatase, Deoxyuridine-triphosphatase | Back alignment and domain information |
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>COG0756 Dut dUTPase [Nucleotide transport and metabolism] | Back alignment and domain information |
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>PRK13956 dut deoxyuridine 5'-triphosphate nucleotidohydrolase; Provisional | Back alignment and domain information |
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>KOG3370 consensus | Back alignment and domain information |
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>PTZ00143 deoxyuridine 5'-triphosphate nucleotidohydrolase; Provisional | Back alignment and domain information |
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Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
Identity | Alignment graph | Length | Definition | E-value |
Target | 367 | 2'-deoxycytidine 5'-triphosphate deaminase [Candidatus | ||
2r9q_A | 370 | Crystal Structure Of 2'-Deoxycytidine 5'-Triphospha | 1e-131 | |
2qxx_A | 190 | Bifunctional Dctp Deaminase: Dutpase From Mycobacte | 2e-35 | |
2qlp_A | 161 | Bifunctional Dctp Deaminase:dutpase From Mycobacter | 2e-35 | |
1xs1_A | 193 | Dctp Deaminase From Escherichia Coli In Complex Wit | 2e-32 | |
2v9x_A | 193 | E138d Variant Of Escherichia Coli Dctp Deaminase In | 9e-32 | |
2j4h_A | 193 | Crystal Structure Of A H121a Escherichia Coli Dctp | 1e-31 | |
1xs6_A | 193 | Dctp Deaminase From Escherichia Coli. E138a Mutant | 1e-31 | |
1xs4_A | 193 | Dctp Deaminase From Escherichia Coli- E138a Mutant | 3e-30 | |
1ogh_A | 204 | Structure Of The Bifunctional Dctp Deaminase-Dutpas | 3e-25 | |
3gf0_A | 204 | Bifunctional Dctp Deaminase-Dutpase Mutant Enzyme V | 1e-24 | |
2hxd_A | 204 | Bifunctional Dctp Deaminase-Dutpase Mutant Enzyme V | 1e-24 | |
3km3_A | 206 | Crystal Structure Of Eoxycytidine Triphosphate Deam | 2e-14 | |
2zdc_A | 169 | Crystal Structure Of Dutpase From Sulfolobus Tokoda | 2e-12 | |
2yzj_A | 169 | Crystal Structure Of Dctp Deaminase From Sulfolobus | 7e-11 | |
2qxx_A | 190 | Bifunctional Dctp Deaminase: Dutpase From Mycobacte | 1e-30 | |
2qlp_A | 161 | Bifunctional Dctp Deaminase:dutpase From Mycobacter | 9e-23 | |
1xs1_A | 193 | Dctp Deaminase From Escherichia Coli In Complex Wit | 6e-23 | |
2v9x_A | 193 | E138d Variant Of Escherichia Coli Dctp Deaminase In | 1e-22 | |
2j4h_A | 193 | Crystal Structure Of A H121a Escherichia Coli Dctp | 2e-22 | |
1xs6_A | 193 | Dctp Deaminase From Escherichia Coli. E138a Mutant | 1e-22 | |
1xs4_A | 193 | Dctp Deaminase From Escherichia Coli- E138a Mutant | 5e-21 | |
1ogh_A | 204 | Structure Of The Bifunctional Dctp Deaminase-Dutpas | 2e-14 | |
3gf0_A | 204 | Bifunctional Dctp Deaminase-Dutpase Mutant Enzyme V | 3e-14 | |
2hxd_A | 204 | Bifunctional Dctp Deaminase-Dutpase Mutant Enzyme V | 4e-14 | |
3km3_A | 206 | Crystal Structure Of Eoxycytidine Triphosphate Deam | 3e-14 | |
2zdc_A | 169 | Crystal Structure Of Dutpase From Sulfolobus Tokoda | 4e-06 | |
2yzj_A | 169 | Crystal Structure Of Dctp Deaminase From Sulfolobus | 1e-04 |
gi|158430716|pdb|2R9Q|A Chain A, Crystal Structure Of 2'-Deoxycytidine 5'-Triphosphate Deaminase From Agrobacterium Tumefaciens Length = 370 | Back alignment and structure |
Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 207/361 (57%), Positives = 250/361 (69%), Gaps = 5/361 (1%) Query: 5 VLPDKAIATLAERGDIVSEHPLEKNQIQPASIDLRLSSKAYRVRASFLPNIDGLVSDKIK 64 +L D AI L + SE L+ +Q+QPAS+DLRL SKAYRVRASF+P V DK+ Sbjct: 12 ILADGAIRALFAGDKLKSEADLDVDQVQPASLDLRLGSKAYRVRASFMPGPGTRVIDKLN 71 Query: 65 HFKLREIDLSGGTVLDANCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFARVIGDRSQ 124 F L E+DLS G VL+ CVYIVPLMESL L +SA ANPKSS GR+D+F RV+ D +Q Sbjct: 72 RFSLHEVDLSQGAVLETGCVYIVPLMESLALPADMSASANPKSSTGRLDIFTRVMTDNAQ 131 Query: 125 EFDSISPNYSGPLYLEILPRTFPIVVRVGSRLSQIRFVKERKFCSQEELSALHELSPLVQ 184 EFD I Y+GPLYLEI PRTFPIVVR GSRLSQIRF ++ E+ LHE LV Sbjct: 132 EFDKIPAGYTGPLYLEISPRTFPIVVRRGSRLSQIRFRIGHALLNESEVLKLHETETLVA 191 Query: 185 DGLRDFSGKGVALSVDLKGNEIGKKSIIGYRAKRHTAAIDVDSENKYDESDFWDPLFSWD 244 + +G G+ALS+DLKG G+ +IGYR K HTA +DVD + ++D DFW+PLF+ Sbjct: 192 SENPNVTGGGIALSIDLKG--FGENGLIGYRGKHHTAVVDVDKKAQHDVLDFWEPLFARG 249 Query: 245 APEGQFILDPNEFYIFASREFIQIPPSLVAEMIPYDHSIGEFRVHYAGFFDPGFGCVLPQ 304 E ILDP+EFYI SRE + +PP AEM P+D +GEFRVHYAGFFDPGFG Sbjct: 250 RAE--LILDPDEFYILVSREAVHVPPLYAAEMTPFDPLVGEFRVHYAGFFDPGFGHAQAG 307 Query: 305 EVGAKAVLEVRS-SVPFVLEHGQIIGRLKYESMDGEPERLYGEARGSHYQSQALKLSKHF 363 G++AVLEVRS VPF+LEHGQI+GRL YE M +PE LYG GS+YQ+Q LKLSKHF Sbjct: 308 GTGSRAVLEVRSHEVPFILEHGQIVGRLVYEHMLEKPEGLYGTGLGSNYQAQGLKLSKHF 367 Query: 364 H 364 Sbjct: 368 R 368 |
gi|168177103|pdb|2QXX|A Chain A, Bifunctional Dctp Deaminase: Dutpase From Mycobacterium Tuberculosis In Complex With Dttp Length = 190 | Back alignment and structure |
>gi|168177097|pdb|2QLP|A Chain A, Bifunctional Dctp Deaminase:dutpase From Mycobacterium Tuberculosis, Apo Form Length = 161 | Back alignment and structure |
gi|58177563|pdb|1XS1|A Chain A, Dctp Deaminase From Escherichia Coli In Complex With Dutp Length = 193 | Back alignment and structure |
>gi|160877833|pdb|2V9X|A Chain A, E138d Variant Of Escherichia Coli Dctp Deaminase In Complex With Dutp Length = 193 | Back alignment and structure |
>gi|157835238|pdb|2J4H|A Chain A, Crystal Structure Of A H121a Escherichia Coli Dctp Deaminase Mutant Enzyme Length = 193 | Back alignment and structure |
>gi|58177575|pdb|1XS6|A Chain A, Dctp Deaminase From Escherichia Coli. E138a Mutant Enzyme In Complex With Dutp Length = 193 | Back alignment and structure |
>gi|58177569|pdb|1XS4|A Chain A, Dctp Deaminase From Escherichia Coli- E138a Mutant Enzyme In Complex With Dctp Length = 193 | Back alignment and structure |
gi|33357733|pdb|1OGH|A Chain A, Structure Of The Bifunctional Dctp Deaminase-Dutpase From Methanocaldococcus Jannaschii Length = 204 | Back alignment and structure |
>gi|224983714|pdb|3GF0|A Chain A, Bifunctional Dctp Deaminase-Dutpase Mutant Enzyme Variant E145q From Methanocaldococcus Jannaschii In Complex With Pyrophosphate And Magnesium Length = 204 | Back alignment and structure |
>gi|157835117|pdb|2HXD|A Chain A, Bifunctional Dctp Deaminase-Dutpase Mutant Enzyme Variant E145a From Methanocaldococcus Jannaschii In Complex With Alpha,Beta-Imido Dutp And Magnesium Length = 204 | Back alignment and structure |
>gi|269914654|pdb|3KM3|A Chain A, Crystal Structure Of Eoxycytidine Triphosphate Deaminase From Anaplasma Phagocytophilum At 2.1a Resolution Length = 206 | Back alignment and structure |
>gi|189096106|pdb|2ZDC|A Chain A, Crystal Structure Of Dutpase From Sulfolobus Tokodaii Length = 169 | Back alignment and structure |
>gi|160286246|pdb|2YZJ|A Chain A, Crystal Structure Of Dctp Deaminase From Sulfolobus Tokodaii Length = 169 | Back alignment and structure |
gi|168177103|pdb|2QXX|A Chain A, Bifunctional Dctp Deaminase: Dutpase From Mycobacterium Tuberculosis In Complex With Dttp Length = 190 | Back alignment and structure |
>gi|168177097|pdb|2QLP|A Chain A, Bifunctional Dctp Deaminase:dutpase From Mycobacterium Tuberculosis, Apo Form Length = 161 | Back alignment and structure |
gi|58177563|pdb|1XS1|A Chain A, Dctp Deaminase From Escherichia Coli In Complex With Dutp Length = 193 | Back alignment and structure |
>gi|160877833|pdb|2V9X|A Chain A, E138d Variant Of Escherichia Coli Dctp Deaminase In Complex With Dutp Length = 193 | Back alignment and structure |
>gi|157835238|pdb|2J4H|A Chain A, Crystal Structure Of A H121a Escherichia Coli Dctp Deaminase Mutant Enzyme Length = 193 | Back alignment and structure |
>gi|58177575|pdb|1XS6|A Chain A, Dctp Deaminase From Escherichia Coli. E138a Mutant Enzyme In Complex With Dutp Length = 193 | Back alignment and structure |
>gi|58177569|pdb|1XS4|A Chain A, Dctp Deaminase From Escherichia Coli- E138a Mutant Enzyme In Complex With Dctp Length = 193 | Back alignment and structure |
gi|33357733|pdb|1OGH|A Chain A, Structure Of The Bifunctional Dctp Deaminase-Dutpase From Methanocaldococcus Jannaschii Length = 204 | Back alignment and structure |
>gi|224983714|pdb|3GF0|A Chain A, Bifunctional Dctp Deaminase-Dutpase Mutant Enzyme Variant E145q From Methanocaldococcus Jannaschii In Complex With Pyrophosphate And Magnesium Length = 204 | Back alignment and structure |
>gi|157835117|pdb|2HXD|A Chain A, Bifunctional Dctp Deaminase-Dutpase Mutant Enzyme Variant E145a From Methanocaldococcus Jannaschii In Complex With Alpha,Beta-Imido Dutp And Magnesium Length = 204 | Back alignment and structure |
>gi|269914654|pdb|3KM3|A Chain A, Crystal Structure Of Eoxycytidine Triphosphate Deaminase From Anaplasma Phagocytophilum At 2.1a Resolution Length = 206 | Back alignment and structure |
>gi|189096106|pdb|2ZDC|A Chain A, Crystal Structure Of Dutpase From Sulfolobus Tokodaii Length = 169 | Back alignment and structure |
>gi|160286246|pdb|2YZJ|A Chain A, Crystal Structure Of Dctp Deaminase From Sulfolobus Tokodaii Length = 169 | Back alignment and structure |
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 367 | 2'-deoxycytidine 5'-triphosphate deaminase [Candidatus | ||
2r9q_A | 370 | AGR_C_764P, 2'-deoxycytidine 5'-triphosphate deaminase; | 1e-109 | |
1pkh_A | 204 | Bifunctional deaminase/diphosphatase; DCTP deaminase, d | 3e-24 | |
2qxx_A | 190 | DCTP deaminase, deoxycytidine triphosphate deaminase; d | 1e-19 | |
1xs1_A | 193 | DCTP deaminase, deoxycytidine triphosphate deaminase; n | 3e-19 | |
2yzj_A | 169 | 167AA long hypothetical dutpase; all beta proteins, hyp | 9e-18 | |
3km3_A | 206 | DCTP deaminase, deoxycytidine triphosphate deaminase; s | 3e-08 | |
1pkh_A | 204 | Bifunctional deaminase/diphosphatase; DCTP deaminase, d | 3e-14 | |
2qxx_A | 190 | DCTP deaminase, deoxycytidine triphosphate deaminase; d | 3e-12 | |
1xs1_A | 193 | DCTP deaminase, deoxycytidine triphosphate deaminase; n | 3e-15 | |
3km3_A | 206 | DCTP deaminase, deoxycytidine triphosphate deaminase; s | 1e-15 |
>2r9q_A AGR_C_764P, 2'-deoxycytidine 5'-triphosphate deaminase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.20A {Agrobacterium tumefaciens str} Length = 370 | Back alignment and structure |
---|
Score = 391 bits (1006), Expect = e-109 Identities = 207/363 (57%), Positives = 251/363 (69%), Gaps = 5/363 (1%) Query: 2 NKGVLPDKAIATLAERGDIVSEHPLEKNQIQPASIDLRLSSKAYRVRASFLPNIDGLVSD 61 G+L D AI L + SE L+ +Q+QPAS+DLRL SKAYRVRASF+P V D Sbjct: 9 TTGILADGAIRALFAGDKLKSEADLDVDQVQPASLDLRLGSKAYRVRASFMPGPGTRVID 68 Query: 62 KIKHFKLREIDLSGGTVLDANCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFARVIGD 121 K+ F L E+DLS G VL+ CVYIVPLMESL L +SA ANPKSS GR+D+F RV+ D Sbjct: 69 KLNRFSLHEVDLSQGAVLETGCVYIVPLMESLALPADMSASANPKSSTGRLDIFTRVMTD 128 Query: 122 RSQEFDSISPNYSGPLYLEILPRTFPIVVRVGSRLSQIRFVKERKFCSQEELSALHELSP 181 +QEFD I Y+GPLYLEI PRTFPIVVR GSRLSQIRF ++ E+ LHE Sbjct: 129 NAQEFDKIPAGYTGPLYLEISPRTFPIVVRRGSRLSQIRFRIGHALLNESEVLKLHETET 188 Query: 182 LVQDGLRDFSGKGVALSVDLKGNEIGKKSIIGYRAKRHTAAIDVDSENKYDESDFWDPLF 241 LV + +G G+ALS+DLKG G+ +IGYR K HTA +DVD + ++D DFW+PLF Sbjct: 189 LVASENPNVTGGGIALSIDLKG--FGENGLIGYRGKHHTAVVDVDKKAQHDVLDFWEPLF 246 Query: 242 SWDAPEGQFILDPNEFYIFASREFIQIPPSLVAEMIPYDHSIGEFRVHYAGFFDPGFGCV 301 + + ILDP+EFYI SRE + +PP AEM P+D +GEFRVHYAGFFDPGFG Sbjct: 247 AR--GRAELILDPDEFYILVSREAVHVPPLYAAEMTPFDPLVGEFRVHYAGFFDPGFGHA 304 Query: 302 LPQEVGAKAVLEVRSS-VPFVLEHGQIIGRLKYESMDGEPERLYGEARGSHYQSQALKLS 360 G++AVLEVRS VPF+LEHGQI+GRL YE M +PE LYG GS+YQ+Q LKLS Sbjct: 305 QAGGTGSRAVLEVRSHEVPFILEHGQIVGRLVYEHMLEKPEGLYGTGLGSNYQAQGLKLS 364 Query: 361 KHF 363 KHF Sbjct: 365 KHF 367 |
>1pkh_A Bifunctional deaminase/diphosphatase; DCTP deaminase, dutpase, DCD-DUT, MJ0430, DCTP, DUTP, hydrolase; 1.42A {Methanocaldococcus jannaschii} SCOP: b.85.4.1 PDB: 1ogh_A 1pkj_A* 1pkk_A* 2hxb_A 2hxe_A 3gf0_A 2hxd_A* Length = 204 | Back alignment and structure |
---|
>2qxx_A DCTP deaminase, deoxycytidine triphosphate deaminase; distorted beta barrel, hydrolase, nucleotide metabolism; HET: TTP 1PE; 2.00A {Mycobacterium tuberculosis H37RV} PDB: 2qlp_A* Length = 190 | Back alignment and structure |
---|
>1xs1_A DCTP deaminase, deoxycytidine triphosphate deaminase; nucleotide metabolism, trimer, hydrolase; HET: DUT; 1.80A {Escherichia coli} SCOP: b.85.4.1 PDB: 2v9x_A* 1xs6_A* 1xs4_A* 2j4q_A* 2j4h_A* Length = 193 | Back alignment and structure |
---|
>2yzj_A 167AA long hypothetical dutpase; all beta proteins, hypothetical protein, NPPSFA; HET: DUD; 1.66A {Sulfolobus tokodaii} PDB: 2zdc_A Length = 169 | Back alignment and structure |
---|
>3km3_A DCTP deaminase, deoxycytidine triphosphate deaminase; ssgcid, NIH, niaid, SBRI, UW, decode, iodide phasing, hydrolase; 2.10A {Anaplasma phagocytophilum HZ} Length = 206 | Back alignment and structure |
---|
>1pkh_A Bifunctional deaminase/diphosphatase; DCTP deaminase, dutpase, DCD-DUT, MJ0430, DCTP, DUTP, hydrolase; 1.42A {Methanocaldococcus jannaschii} SCOP: b.85.4.1 PDB: 1ogh_A 1pkj_A* 1pkk_A* 2hxb_A 2hxe_A 3gf0_A 2hxd_A* Length = 204 | Back alignment and structure |
---|
>2qxx_A DCTP deaminase, deoxycytidine triphosphate deaminase; distorted beta barrel, hydrolase, nucleotide metabolism; HET: TTP 1PE; 2.00A {Mycobacterium tuberculosis H37RV} PDB: 2qlp_A* Length = 190 | Back alignment and structure |
---|
>1xs1_A DCTP deaminase, deoxycytidine triphosphate deaminase; nucleotide metabolism, trimer, hydrolase; HET: DUT; 1.80A {Escherichia coli} SCOP: b.85.4.1 PDB: 2v9x_A* 1xs6_A* 1xs4_A* 2j4q_A* 2j4h_A* Length = 193 | Back alignment and structure |
---|
>3km3_A DCTP deaminase, deoxycytidine triphosphate deaminase; ssgcid, NIH, niaid, SBRI, UW, decode, iodide phasing, hydrolase; 2.10A {Anaplasma phagocytophilum HZ} Length = 206 | Back alignment and structure |
---|
Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 367 | 2'-deoxycytidine 5'-triphosphate deaminase [Candidatus | ||
2r9q_A | 370 | AGR_C_764P, 2'-deoxycytidine 5'-triphosphate deaminase; | 100.0 | |
1pkh_A | 204 | Bifunctional deaminase/diphosphatase; DCTP deaminase, d | 100.0 | |
2qxx_A | 190 | DCTP deaminase, deoxycytidine triphosphate deaminase; d | 100.0 | |
1xs1_A | 193 | DCTP deaminase, deoxycytidine triphosphate deaminase; n | 100.0 | |
3km3_A | 206 | DCTP deaminase, deoxycytidine triphosphate deaminase; s | 100.0 | |
2yzj_A | 169 | 167AA long hypothetical dutpase; all beta proteins, hyp | 100.0 | |
2r9q_A | 370 | AGR_C_764P, 2'-deoxycytidine 5'-triphosphate deaminase; | 99.85 | |
2bsy_A | 278 | Deoxyuridine 5'-triphosphate nucleotidohydrolase; dutpa | 98.94 | |
1xs1_A | 193 | DCTP deaminase, deoxycytidine triphosphate deaminase; n | 100.0 | |
2qxx_A | 190 | DCTP deaminase, deoxycytidine triphosphate deaminase; d | 99.98 | |
3km3_A | 206 | DCTP deaminase, deoxycytidine triphosphate deaminase; s | 99.97 | |
1pkh_A | 204 | Bifunctional deaminase/diphosphatase; DCTP deaminase, d | 99.96 | |
2yzj_A | 169 | 167AA long hypothetical dutpase; all beta proteins, hyp | 99.91 | |
1dun_A | 134 | Deoxyuridine 5'-triphosphate nucleoditohydrolase; dutpa | 99.61 | |
1f7d_A | 136 | POL polyprotein; eight stranded beta-barrel, viral prot | 99.49 | |
2ol1_A | 147 | Deoxyuridine 5'-triphosphate nucleotidohydrolase; fold, | 99.44 | |
3lqw_A | 163 | Deoxyuridine 5'-triphosphate nucleotidohydrolase; emera | 99.4 | |
3c2t_A | 141 | Deoxyuridine triphosphatase; dutpase chlorella virus, h | 99.35 | |
3ecy_A | 160 | CG4584-PA, isoform A (bcDNA.LD08534); jelly-roll, dimer | 99.3 | |
3ca9_A | 165 | Deoxyuridine triphosphatase; dutpase chlorella virus, h | 99.29 | |
3p48_A | 147 | Deoxyuridine 5'-triphosphate nucleotidohydrolase; trime | 99.29 | |
3f4f_A | 167 | Deoxyuridine 5'-triphosphate nucleotidohydrolase; trime | 99.28 | |
3hza_A | 174 | Deoxyuridine 5'-triphosphate nucleotidohydrolase; jelly | 99.26 | |
2d4n_A | 152 | DU; jelly roll, hydrolase; HET: UPR; 1.53A {Mason-pfize | 99.26 | |
3mdx_A | 178 | Deoxyuridine 5'-triphosphate nucleotidohydrolase; metal | 99.25 | |
3ehw_A | 164 | DUTP pyrophosphatase; jelly-roll, FULL-length C-termina | 99.22 | |
2p9o_A | 169 | DUTP pyrophosphatase-like protein; dutpase, magnesium b | 99.2 | |
2xcd_A | 144 | Probable deoxyuridine 5'-triphosphate nucleotidoh YNCF; | 99.19 | |
3h6x_A | 148 | Dutpase; jelly-roll beta-barrel, hydrolase; 1.70A {Stre | 99.18 | |
1euw_A | 152 | Dutpase, deoxyuridine 5'-triphosphate nucleotidohydrola | 98.86 | |
2bsy_A | 278 | Deoxyuridine 5'-triphosphate nucleotidohydrolase; dutpa | 99.57 | |
1vyq_A | 173 | Deoxyuridine 5'-triphosphate nucleotidohydrolase; drug | 99.15 | |
1dun_A | 134 | Deoxyuridine 5'-triphosphate nucleoditohydrolase; dutpa | 99.15 | |
1f7d_A | 136 | POL polyprotein; eight stranded beta-barrel, viral prot | 98.94 | |
3p48_A | 147 | Deoxyuridine 5'-triphosphate nucleotidohydrolase; trime | 98.87 | |
3lqw_A | 163 | Deoxyuridine 5'-triphosphate nucleotidohydrolase; emera | 98.84 | |
2ol1_A | 147 | Deoxyuridine 5'-triphosphate nucleotidohydrolase; fold, | 98.82 | |
3ecy_A | 160 | CG4584-PA, isoform A (bcDNA.LD08534); jelly-roll, dimer | 98.8 | |
3c2t_A | 141 | Deoxyuridine triphosphatase; dutpase chlorella virus, h | 98.75 | |
2xcd_A | 144 | Probable deoxyuridine 5'-triphosphate nucleotidoh YNCF; | 98.75 | |
3ca9_A | 165 | Deoxyuridine triphosphatase; dutpase chlorella virus, h | 98.73 | |
3h6x_A | 148 | Dutpase; jelly-roll beta-barrel, hydrolase; 1.70A {Stre | 98.72 | |
3hza_A | 174 | Deoxyuridine 5'-triphosphate nucleotidohydrolase; jelly | 98.71 | |
3mdx_A | 178 | Deoxyuridine 5'-triphosphate nucleotidohydrolase; metal | 98.67 | |
3ehw_A | 164 | DUTP pyrophosphatase; jelly-roll, FULL-length C-termina | 98.66 | |
2d4n_A | 152 | DU; jelly roll, hydrolase; HET: UPR; 1.53A {Mason-pfize | 98.46 | |
2p9o_A | 169 | DUTP pyrophosphatase-like protein; dutpase, magnesium b | 98.45 | |
1euw_A | 152 | Dutpase, deoxyuridine 5'-triphosphate nucleotidohydrola | 98.24 | |
1vyq_A | 173 | Deoxyuridine 5'-triphosphate nucleotidohydrolase; drug | 97.87 | |
3f4f_A | 167 | Deoxyuridine 5'-triphosphate nucleotidohydrolase; trime | 98.89 |
>2r9q_A AGR_C_764P, 2'-deoxycytidine 5'-triphosphate deaminase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.20A {Agrobacterium tumefaciens str} | Back alignment and structure |
---|
Probab=100.00 E-value=0 Score=911.75 Aligned_cols=360 Identities=58% Similarity=0.953 Sum_probs=351.8 Q ss_pred CCCCCCHHHHHHHHHCCCEEECCCCCHHHCCCCEEEEEECCEEEEEECCCCCCCCCCHHHHCCCCEEEEEECCCCEEECC Q ss_conf 87615868999999879849817898656571225887589899981231578886211000240478873688648668 Q gi|254780480|r 2 NKGVLPDKAIATLAERGDIVSEHPLEKNQIQPASIDLRLSSKAYRVRASFLPNIDGLVSDKIKHFKLREIDLSGGTVLDA 81 (367) Q Consensus 2 ~~GILsd~~I~~li~~g~I~i~~p~~~~QIQPaSiDLRLG~~~~rv~asflp~~~~~v~~~l~~~~~~eidl~~g~vLep 81 (367) ++|||||++|++++++|.|.+++|++++||||||+|||||++|||+++||+|+.+.+|.++++++.+++++++++|+|+| T Consensus 9 ~~GILsd~~I~~li~~g~I~i~p~~~~~QIqPaSvDLrLG~~~~~~~~s~lp~~~~~v~d~~~~~~~~~i~~~~~~vL~P 88 (370) T 2r9q_A 9 TTGILADGAIRALFAGDKLKSEADLDVDQVQPASLDLRLGSKAYRVRASFMPGPGTRVIDKLNRFSLHEVDLSQGAVLET 88 (370) T ss_dssp CSEECCHHHHHHHHHHTSEEESSCCCTTCBCSSCEEEEBCSEEEEESSBCCCCTTCCHHHHHHHC-CEEEECSSCEEECT T ss_pred CCEECCHHHHHHHHHCCCCCCCCCCCHHHCCCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCEECC T ss_conf 68878699999998779917079999777788569832387899996544778997401112254159995799809758 Q ss_pred CCEEEEEEEEEEECCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCEEEECCCEEEEEEE Q ss_conf 73299998889984998279986013431125034232078775542366744389999516865279833980356898 Q gi|254780480|r 82 NCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFARVIGDRSQEFDSISPNYSGPLYLEILPRTFPIVVRVGSRLSQIRF 161 (367) Q Consensus 82 g~~yLv~t~E~i~LP~di~a~~~pKSS~GRLgif~r~i~~~~~~f~~id~Gy~G~l~lEI~~~sfpI~v~~G~rl~Qi~f 161 (367) ||+||++|+|+|+||+|++|+++||||+||||||||+++|++.+|++|||||+|+|||||+|+||||+|||||||||||| T Consensus 89 g~~yL~~t~E~i~LP~di~a~~~~KSS~gRlgl~~~~~~~~~~~~~~i~~Gy~G~ltLEI~n~s~pI~l~~G~ri~Ql~F 168 (370) T 2r9q_A 89 GCVYIVPLMESLALPADMSASANPKSSTGRLDIFTRVMTDNAQEFDKIPAGYTGPLYLEISPRTFPIVVRRGSRLSQIRF 168 (370) T ss_dssp TCEEEEEEEEEEECCTTEEEEEEECHHHHTTTEEEEEEETTCSSTTEECTTCEEEEEEEEEESSSCEEECTTCEEEEEEE T ss_pred CCEEEEEEEEEEECCCCCEEEEECCCHHHHCCEEEEEECCCCCCCCCCCCCEEEEEEEEEECCCCCEEEECCCEEEEEEE T ss_conf 97899998779966998589998213132153787430357755664576421149999945875779968975788997 Q ss_pred EECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEECCCCCEEECCCCCCCCHHHHHHHHC Q ss_conf 50887689999999875278603665544337316788814554566663045512677513015655558778664311 Q gi|254780480|r 162 VKERKFCSQEELSALHELSPLVQDGLRDFSGKGVALSVDLKGNEIGKKSIIGYRAKRHTAAIDVDSENKYDESDFWDPLF 241 (367) Q Consensus 162 ~~g~~~LsD~eL~~lh~~~~LV~~~~~~~~~~Gl~~sVdL~~~~~~~~~iiGyrAkkht~~IDl~k~~~y~~~dfwe~i~ 241 (367) ++|++++||++|+++|++++||+++.+..+++|+++||||+++ ..+++|||||||||++||++|+++|++++|||||+ T Consensus 169 ~~g~~~lsd~~l~~lh~~~~lv~~~~~~~~~~gl~lsVdL~~~--~~~~iigyrAk~h~~~Id~~k~~~y~~~~fwe~i~ 246 (370) T 2r9q_A 169 RIGHALLNESEVLKLHETETLVASENPNVTGGGIALSIDLKGF--GENGLIGYRGKHHTAVVDVDKKAQHDVLDFWEPLF 246 (370) T ss_dssp EESCCBCCHHHHHHHHHHSCSBC---CCCCC--EEEEBCCSCC--TTTTEEEEEECSSCCCEETTCGGGSCGGGTEEEEE T ss_pred ECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCC--CCCCCEEEECCCCCCCEEECCCCCCCHHHHHHEEE T ss_conf 3377666889999877408732477544147882589983356--77871799614678836605655246878431021 Q ss_pred CCCCCCCEEEECCCCEEEEEEEEEEECCCCCEEEEEEECCCCCCEEEECCEEECCCCCCCCCCCCCCEEEEEECC-CCCE Q ss_conf 355777539988997899986334442834016445304333421342160456886654345667504788617-8888 Q gi|254780480|r 242 SWDAPEGQFILDPNEFYIFASREFIQIPPSLVAEMIPYDHSIGEFRVHYAGFFDPGFGCVLPQEVGAKAVLEVRS-SVPF 320 (367) Q Consensus 242 ~~~~~~~~~~l~p~~F~l~~s~E~v~iP~~~aae~~~~~~~~g~~r~h~AGf~DpGf~~~~~~~~~~~~vLevr~-~~p~ 320 (367) .. +++.|+|+||||||++|+|+|+||+|+||||+++++.+|+||+||||||||||+|+.+++.|+++|||||+ ++|| T Consensus 247 ~~--~~~~~iL~P~ef~l~~T~E~v~iP~~~aa~~~~rs~~~r~g~~~~agf~DpGf~g~~~~~~g~~~vLev~~~~~p~ 324 (370) T 2r9q_A 247 AR--GRAELILDPDEFYILVSREAVHVPPLYAAEMTPFDPLVGEFRVHYAGFFDPGFGHAQAGGTGSRAVLEVRSHEVPF 324 (370) T ss_dssp CC--SSSEEEECTTCCEEEEEEEEECCCTTEEEEEEECGGGTTTEEEESCCEECTTTTC-----CCEEEEEEEEECSSCE T ss_pred CC--CCCEEEEECCCEEEEEEEEEEEECCCEEEEEEEECHHHCCCEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCCCE T ss_conf 27--8977999679799999999999789739999704343258267647517699876445566855999992698886 Q ss_pred EEECCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHH Q ss_conf 994798889999976376642223754347232666773443430 Q gi|254780480|r 321 VLEHGQIIGRLKYESMDGEPERLYGEARGSHYQSQALKLSKHFHQ 365 (367) Q Consensus 321 ~l~~g~~i~~l~~~~~~~~p~~~Yg~~~~s~Yq~Qgl~lsk~f~~ 365 (367) +|++||+||||+||+|+++|+++||++++||||+||||||||||+ T Consensus 325 ~l~~G~~I~qlvfe~l~~~p~~~Yg~~~~s~Yq~Qg~~lsK~fk~ 369 (370) T 2r9q_A 325 ILEHGQIVGRLVYEHMLEKPEGLYGTGLGSNYQAQGLKLSKHFRA 369 (370) T ss_dssp EEETTCEEEEEEEEEBSSCCC------------------------ T ss_pred EEECCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHCCC T ss_conf 983899999999999878765556887787144888881220357 |
>1pkh_A Bifunctional deaminase/diphosphatase; DCTP deaminase, dutpase, DCD-DUT, MJ0430, DCTP, DUTP, hydrolase; 1.42A {Methanocaldococcus jannaschii} SCOP: b.85.4.1 PDB: 1ogh_A 1pkj_A* 1pkk_A* 2hxb_A 2hxe_A 3gf0_A 2hxd_A* | Back alignment and structure |
---|
>2qxx_A DCTP deaminase, deoxycytidine triphosphate deaminase; distorted beta barrel, hydrolase, nucleotide metabolism; HET: TTP 1PE; 2.00A {Mycobacterium tuberculosis H37RV} PDB: 2qlp_A* | Back alignment and structure |
---|
>1xs1_A DCTP deaminase, deoxycytidine triphosphate deaminase; nucleotide metabolism, trimer, hydrolase; HET: DUT; 1.80A {Escherichia coli} SCOP: b.85.4.1 PDB: 2v9x_A* 1xs6_A* 1xs4_A* 2j4q_A* 2j4h_A* | Back alignment and structure |
---|
>3km3_A DCTP deaminase, deoxycytidine triphosphate deaminase; ssgcid, NIH, niaid, SBRI, UW, decode, iodide phasing, hydrolase; 2.10A {Anaplasma phagocytophilum HZ} | Back alignment and structure |
---|
>2yzj_A 167AA long hypothetical dutpase; all beta proteins, hypothetical protein, NPPSFA; HET: DUD; 1.66A {Sulfolobus tokodaii} PDB: 2zdc_A | Back alignment and structure |
---|
>2r9q_A AGR_C_764P, 2'-deoxycytidine 5'-triphosphate deaminase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.20A {Agrobacterium tumefaciens str} | Back alignment and structure |
---|
>2bsy_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; dutpase, monomer, nucleotide metabolism, structural proteomics in europe, spine; HET: UMP; 1.5A {Human herpesvirus 4} SCOP: b.85.4.1 b.85.4.1 PDB: 2bt1_A* 2we1_A* 2we0_A* 2we2_A* 2we3_A* | Back alignment and structure |
---|
>1xs1_A DCTP deaminase, deoxycytidine triphosphate deaminase; nucleotide metabolism, trimer, hydrolase; HET: DUT; 1.80A {Escherichia coli} SCOP: b.85.4.1 PDB: 2v9x_A* 1xs6_A* 1xs4_A* 2j4q_A* 2j4h_A* | Back alignment and structure |
---|
>2qxx_A DCTP deaminase, deoxycytidine triphosphate deaminase; distorted beta barrel, hydrolase, nucleotide metabolism; HET: TTP 1PE; 2.00A {Mycobacterium tuberculosis H37RV} PDB: 2qlp_A* | Back alignment and structure |
---|
>3km3_A DCTP deaminase, deoxycytidine triphosphate deaminase; ssgcid, NIH, niaid, SBRI, UW, decode, iodide phasing, hydrolase; 2.10A {Anaplasma phagocytophilum HZ} | Back alignment and structure |
---|
>1pkh_A Bifunctional deaminase/diphosphatase; DCTP deaminase, dutpase, DCD-DUT, MJ0430, DCTP, DUTP, hydrolase; 1.42A {Methanocaldococcus jannaschii} SCOP: b.85.4.1 PDB: 1ogh_A 1pkj_A* 1pkk_A* 2hxb_A 2hxe_A 3gf0_A 2hxd_A* | Back alignment and structure |
---|
>2yzj_A 167AA long hypothetical dutpase; all beta proteins, hypothetical protein, NPPSFA; HET: DUD; 1.66A {Sulfolobus tokodaii} PDB: 2zdc_A | Back alignment and structure |
---|
>1dun_A Deoxyuridine 5'-triphosphate nucleoditohydrolase; dutpase, EIAV, trimeric enzyme, aspartyl protease; 1.90A {Equine infectious anemia virus} SCOP: b.85.4.1 PDB: 1duc_A | Back alignment and structure |
---|
>1f7d_A POL polyprotein; eight stranded beta-barrel, viral protein, hydrolase; 1.40A {Feline immunodeficiency virus} SCOP: b.85.4.1 PDB: 1f7k_A* 1f7n_A* 1f7o_A 1f7p_A* 1f7q_A* 1f7r_A* 1dut_A | Back alignment and structure |
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>2ol1_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; fold, jelly-roll, superfamily, dutpase-like; HET: UMP; 1.80A {Vaccinia virus} PDB: 2oke_A* 2okd_A* 2ol0_A* 2okb_A | Back alignment and structure |
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>3lqw_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; emerald biostructures, ALS collaborative crystallography; 1.30A {Entamoeba histolytica} | Back alignment and structure |
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>3c2t_A Deoxyuridine triphosphatase; dutpase chlorella virus, hydrolase; HET: DUD; 3.00A {Paramecium bursaria chlorella VIRUSIL3A} PDB: 3c3i_A* | Back alignment and structure |
---|
>3ecy_A CG4584-PA, isoform A (bcDNA.LD08534); jelly-roll, dimeric assembly, hydrolase; 1.88A {Drosophila melanogaster} | Back alignment and structure |
---|
>3ca9_A Deoxyuridine triphosphatase; dutpase chlorella virus, hydrolase; HET: DUD; 3.00A {Paramecium bursaria chlorella VIRUSIL3A} | Back alignment and structure |
---|
>3p48_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; trimer, beta barrel, DUMPPNP pyrophosphatase, phosphoprotein, structural genomics; HET: DUP; 1.67A {Saccharomyces cerevisiae} | Back alignment and structure |
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>3f4f_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; trimer, beta barrel, UMP, product complex, DUTP pyrophosphatase, DITP; HET: UMP; 2.00A {Saccharomyces cerevisiae} PDB: 3hhq_A | Back alignment and structure |
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>3hza_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; jelly roll, domain swapping, nucleotide metabolism; HET: DUP; 1.20A {Mycobacterium tuberculosis} PDB: 1six_A* 1slh_A* 1sm8_A* 1smc_A* 1snf_A* 2py4_A* 3h6d_A* 3i93_A* 1mq7_A 1sjn_A* | Back alignment and structure |
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>2d4n_A DU; jelly roll, hydrolase; HET: UPR; 1.53A {Mason-pfizer monkey virus} PDB: 2d4m_A 2d4l_A* | Back alignment and structure |
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>3mdx_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; metal-binding, nucleotide metabolism, structural genomics; 1.45A {Brucella melitensis} PDB: 3mbq_A | Back alignment and structure |
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>3ehw_A DUTP pyrophosphatase; jelly-roll, FULL-length C-terminal ARM, enzyme-ligand complex, hydrolase; HET: DUP; 1.80A {Homo sapiens} SCOP: b.85.4.1 PDB: 2hqu_A* 1q5h_A* 1q5u_X | Back alignment and structure |
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>2p9o_A DUTP pyrophosphatase-like protein; dutpase, magnesium binding, hydrolase; 2.00A {Arabidopsis thaliana} PDB: 2pc5_A | Back alignment and structure |
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>2xcd_A Probable deoxyuridine 5'-triphosphate nucleotidoh YNCF; hydrolase; 1.84A {Bacillus subtilis} PDB: 2xce_A* 2baz_A | Back alignment and structure |
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>3h6x_A Dutpase; jelly-roll beta-barrel, hydrolase; 1.70A {Streptococcus mutans} | Back alignment and structure |
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>1euw_A Dutpase, deoxyuridine 5'-triphosphate nucleotidohydrolase; jelly roll, mercury derivative; 1.05A {Escherichia coli} SCOP: b.85.4.1 PDB: 1dud_A 1dup_A 1eu5_A 1rn8_A* 1seh_A* 2hr6_A* 2hrm_A* 1rnj_A* 1syl_A* | Back alignment and structure |
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>2bsy_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; dutpase, monomer, nucleotide metabolism, structural proteomics in europe, spine; HET: UMP; 1.5A {Human herpesvirus 4} SCOP: b.85.4.1 b.85.4.1 PDB: 2bt1_A* 2we1_A* 2we0_A* 2we2_A* 2we3_A* | Back alignment and structure |
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>1vyq_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; drug design, dutpase, deoxyuridine nucleotidohydrolase, malaria; HET: DUX; 2.4A {Plasmodium falciparum} SCOP: b.85.4.1 | Back alignment and structure |
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>1dun_A Deoxyuridine 5'-triphosphate nucleoditohydrolase; dutpase, EIAV, trimeric enzyme, aspartyl protease; 1.90A {Equine infectious anemia virus} SCOP: b.85.4.1 PDB: 1duc_A | Back alignment and structure |
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>1f7d_A POL polyprotein; eight stranded beta-barrel, viral protein, hydrolase; 1.40A {Feline immunodeficiency virus} SCOP: b.85.4.1 PDB: 1f7k_A* 1f7n_A* 1f7o_A 1f7p_A* 1f7q_A* 1f7r_A* 1dut_A | Back alignment and structure |
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>3p48_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; trimer, beta barrel, DUMPPNP pyrophosphatase, phosphoprotein, structural genomics; HET: DUP; 1.67A {Saccharomyces cerevisiae} | Back alignment and structure |
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>3lqw_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; emerald biostructures, ALS collaborative crystallography; 1.30A {Entamoeba histolytica} | Back alignment and structure |
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>2ol1_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; fold, jelly-roll, superfamily, dutpase-like; HET: UMP; 1.80A {Vaccinia virus} PDB: 2oke_A* 2okd_A* 2ol0_A* 2okb_A | Back alignment and structure |
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>3ecy_A CG4584-PA, isoform A (bcDNA.LD08534); jelly-roll, dimeric assembly, hydrolase; 1.88A {Drosophila melanogaster} | Back alignment and structure |
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>3c2t_A Deoxyuridine triphosphatase; dutpase chlorella virus, hydrolase; HET: DUD; 3.00A {Paramecium bursaria chlorella VIRUSIL3A} PDB: 3c3i_A* | Back alignment and structure |
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>2xcd_A Probable deoxyuridine 5'-triphosphate nucleotidoh YNCF; hydrolase; 1.84A {Bacillus subtilis} PDB: 2xce_A* 2baz_A | Back alignment and structure |
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>3ca9_A Deoxyuridine triphosphatase; dutpase chlorella virus, hydrolase; HET: DUD; 3.00A {Paramecium bursaria chlorella VIRUSIL3A} | Back alignment and structure |
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>3h6x_A Dutpase; jelly-roll beta-barrel, hydrolase; 1.70A {Streptococcus mutans} | Back alignment and structure |
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>3hza_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; jelly roll, domain swapping, nucleotide metabolism; HET: DUP; 1.20A {Mycobacterium tuberculosis} PDB: 1six_A* 1slh_A* 1sm8_A* 1smc_A* 1snf_A* 2py4_A* 3h6d_A* 3i93_A* 1mq7_A 1sjn_A* | Back alignment and structure |
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>3mdx_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; metal-binding, nucleotide metabolism, structural genomics; 1.45A {Brucella melitensis} PDB: 3mbq_A | Back alignment and structure |
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>3ehw_A DUTP pyrophosphatase; jelly-roll, FULL-length C-terminal ARM, enzyme-ligand complex, hydrolase; HET: DUP; 1.80A {Homo sapiens} SCOP: b.85.4.1 PDB: 2hqu_A* 1q5h_A* 1q5u_X | Back alignment and structure |
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>2d4n_A DU; jelly roll, hydrolase; HET: UPR; 1.53A {Mason-pfizer monkey virus} PDB: 2d4m_A 2d4l_A* | Back alignment and structure |
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>2p9o_A DUTP pyrophosphatase-like protein; dutpase, magnesium binding, hydrolase; 2.00A {Arabidopsis thaliana} PDB: 2pc5_A | Back alignment and structure |
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>1euw_A Dutpase, deoxyuridine 5'-triphosphate nucleotidohydrolase; jelly roll, mercury derivative; 1.05A {Escherichia coli} SCOP: b.85.4.1 PDB: 1dud_A 1dup_A 1eu5_A 1rn8_A* 1seh_A* 2hr6_A* 2hrm_A* 1rnj_A* 1syl_A* | Back alignment and structure |
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>1vyq_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; drug design, dutpase, deoxyuridine nucleotidohydrolase, malaria; HET: DUX; 2.4A {Plasmodium falciparum} SCOP: b.85.4.1 | Back alignment and structure |
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>3f4f_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; trimer, beta barrel, UMP, product complex, DUTP pyrophosphatase, DITP; HET: UMP; 2.00A {Saccharomyces cerevisiae} PDB: 3hhq_A | Back alignment and structure |
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Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | E-value |
367 | 2'-deoxycytidine 5'-triphosphate deaminase [Candidatus | |||
d1pkha_ | 182 | b.85.4.1 (A:) Bifunctional dCTP deaminase/dUTPase {Arch | 1e-22 | |
d1xs1a_ | 193 | b.85.4.1 (A:) Deoxycytidine triphosphate deaminase (dCT | 3e-20 | |
d1pkha_ | 182 | b.85.4.1 (A:) Bifunctional dCTP deaminase/dUTPase {Arch | 4e-11 | |
d1xs1a_ | 193 | b.85.4.1 (A:) Deoxycytidine triphosphate deaminase (dCT | 8e-16 |
>d1pkha_ b.85.4.1 (A:) Bifunctional dCTP deaminase/dUTPase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 182 | Back information, alignment and structure |
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class: All beta proteins fold: beta-clip superfamily: dUTPase-like family: dUTPase-like domain: Bifunctional dCTP deaminase/dUTPase species: Archaeon Methanococcus jannaschii [TaxId: 2190] Score = 101 bits (251), Expect = 1e-22 Identities = 34/174 (19%), Positives = 58/174 (33%), Gaps = 22/174 (12%) Query: 5 VLPDKAIATLAERGDIVSEHPLEKNQIQPASIDLRLSSKAYRVRASFLPNIDGLVSDKIK 64 +L DK I I+ + P K+ + P S D+ L + L +IK Sbjct: 2 ILSDKDIIDYVTSKRIIIK-PFNKDFVGPCSYDVTLGDEFIIYDDEVYDLSKELNYKRIK 60 Query: 65 HFK---------------LREIDLSGGTVLDANCVYIVPLMESLNLKNGISAYANPKSSI 109 + + E + L N ISA +SS+ Sbjct: 61 IKNSILVCPLNYNLTEEKINYFKEKYNVDYVVEGGVLGTTNEYIELPNDISAQYQGRSSL 120 Query: 110 GRIDVFARVIGDRSQEFDSISPNYSGPLYLEILPRTFPIVVRVGSRLSQIRFVK 163 GR+ + + I + G + LEI+ P+++ R+ Q+ F K Sbjct: 121 GRVFLTSHQTAGW------IDAGFKGKITLEIVAFDKPVILYKNQRIGQLIFSK 168 |
>d1xs1a_ b.85.4.1 (A:) Deoxycytidine triphosphate deaminase (dCTP deaminase) {Escherichia coli [TaxId: 562]} Length = 193 | Back information, alignment and structure |
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>d1pkha_ b.85.4.1 (A:) Bifunctional dCTP deaminase/dUTPase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 182 | Back information, alignment and structure |
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>d1xs1a_ b.85.4.1 (A:) Deoxycytidine triphosphate deaminase (dCTP deaminase) {Escherichia coli [TaxId: 562]} Length = 193 | Back information, alignment and structure |
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Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | Probability |
Target | 367 | 2'-deoxycytidine 5'-triphosphate deaminase [Candidatus | ||
d1xs1a_ | 193 | Deoxycytidine triphosphate deaminase (dCTP deaminase) { | 100.0 | |
d1pkha_ | 182 | Bifunctional dCTP deaminase/dUTPase {Archaeon Methanoco | 100.0 | |
d1xs1a_ | 193 | Deoxycytidine triphosphate deaminase (dCTP deaminase) { | 100.0 | |
d1pkha_ | 182 | Bifunctional dCTP deaminase/dUTPase {Archaeon Methanoco | 99.91 | |
d1duna_ | 120 | Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPa | 99.57 | |
d1f7da_ | 118 | Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPa | 99.46 | |
d2bsya2 | 136 | Monomeric viral dUTPase {Epstein-barr virus [TaxId: 103 | 99.31 | |
d2bsya1 | 113 | Monomeric viral dUTPase {Epstein-barr virus [TaxId: 103 | 99.28 | |
d3ehwa1 | 136 | Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPa | 99.2 | |
d1euwa_ | 136 | Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPa | 99.06 | |
d1sixa_ | 153 | Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPa | 99.0 | |
d1duna_ | 120 | Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPa | 99.21 | |
d1f7da_ | 118 | Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPa | 98.95 | |
d2bsya1 | 113 | Monomeric viral dUTPase {Epstein-barr virus [TaxId: 103 | 98.82 | |
d3ehwa1 | 136 | Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPa | 98.62 | |
d1sixa_ | 153 | Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPa | 98.46 | |
d2bsya2 | 136 | Monomeric viral dUTPase {Epstein-barr virus [TaxId: 103 | 98.4 | |
d1euwa_ | 136 | Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPa | 98.4 | |
d1vyqa1 | 159 | Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPa | 97.94 | |
d1vyqa1 | 159 | Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPa | 99.09 |
>d1xs1a_ b.85.4.1 (A:) Deoxycytidine triphosphate deaminase (dCTP deaminase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: All beta proteins fold: beta-clip superfamily: dUTPase-like family: dUTPase-like domain: Deoxycytidine triphosphate deaminase (dCTP deaminase) species: Escherichia coli [TaxId: 562] Probab=100.00 E-value=9.7e-41 Score=282.81 Aligned_cols=156 Identities=22% Similarity=0.343 Sum_probs=132.8 Q ss_pred CCCCHHHHHHHHHCCCEEECCCCCH-HHCCCCEEEEEECCEEEEEECCCCCCCC-----CCHHHHCCCC--EEEEEECCC Q ss_conf 6158689999998798498178986-5657122588758989998123157888-----6211000240--478873688 Q gi|254780480|r 4 GVLPDKAIATLAERGDIVSEHPLEK-NQIQPASIDLRLSSKAYRVRASFLPNID-----GLVSDKIKHF--KLREIDLSG 75 (367) Q Consensus 4 GILsd~~I~~li~~g~I~i~~p~~~-~QIQPaSiDLRLG~~~~rv~asflp~~~-----~~v~~~l~~~--~~~eidl~~ 75 (367) |||||++|++++++|.|.++ |+++ +||||||+|||||+++++++.+.-+..+ ..+.+.++.. ....++.++ T Consensus 1 MiLSd~~I~~~i~~g~I~i~-P~~~~~qiqp~s~DLrLg~~~~v~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (193) T d1xs1a_ 1 MRLCDRDIEAWLDEGRLSIN-PRPPVERINGATVDVRLGNKFRTFRGHTAAFIDLSGPKDEVSAALDRVMSDEIVLDEGE 79 (193) T ss_dssp CBCCHHHHHHHHHHTSSEEE-SCCCGGGEETTEEEEEBCSEEBCBCGGGCSCEETTSCHHHHHHHHHHHBCCCEECCTTC T ss_pred CCCCHHHHHHHHHCCCEEEC-CCCHHHCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCC T ss_conf 95788999999986995871-68721015784599873667999954465203567775023333221034215505786 Q ss_pred CEEECCCCEEEEEEEEEEECCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEECCCC-CCEEEECCC Q ss_conf 6486687329999888998499827998601343112503423207877554236674438999951686-527983398 Q gi|254780480|r 76 GTVLDANCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFARVIGDRSQEFDSISPNYSGPLYLEILPRT-FPIVVRVGS 154 (367) Q Consensus 76 g~vLepg~~yLv~t~E~i~LP~di~a~~~pKSS~GRLgif~r~i~~~~~~f~~id~Gy~G~l~lEI~~~s-fpI~v~~G~ 154 (367) +|+|+||++||++|+|+|+||+|++|.++||||+||+||++|++++ +|||||+|++||||.|.+ +||++++|| T Consensus 80 ~~~L~Pg~~~L~~T~E~v~lP~~~~a~~~~rSS~~R~Gl~~~~~ag------~~dpG~~G~ltlel~n~~~~pi~i~~g~ 153 (193) T d1xs1a_ 80 AFYLHPGELALAVTLESVTLPADLVGWLDGRSSLARLGLMVHVTAH------RIDPGWSGCIVLEFYNSGKLPLALRPGM 153 (193) T ss_dssp CEEECTTCCEEEEEEEEEECCTTEEEEEECCHHHHTTTEESCSSCC------EECTTCEEEEEEEEEECSSSCEEECTTS T ss_pred EEEEECCCEEEEEEEEEEECCCCEEEEEEECCCCEEEEEEEECCCC------EECCCCCEEEEEEEEECCCCEEEECCCC T ss_conf 1998189899999777886483548999814660005778851354------8779976069999996774269975899 Q ss_pred EEEEEEEEECCC Q ss_conf 035689850887 Q gi|254780480|r 155 RLSQIRFVKERK 166 (367) Q Consensus 155 rl~Qi~f~~g~~ 166 (367) |||||+|++... T Consensus 154 ~i~Qlvf~~~~~ 165 (193) T d1xs1a_ 154 LIGALSFEPLSG 165 (193) T ss_dssp EEEEEEEEECSS T ss_pred EEEEEEEEECCC T ss_conf 899999998878 |
>d1pkha_ b.85.4.1 (A:) Bifunctional dCTP deaminase/dUTPase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
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>d1xs1a_ b.85.4.1 (A:) Deoxycytidine triphosphate deaminase (dCTP deaminase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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>d1pkha_ b.85.4.1 (A:) Bifunctional dCTP deaminase/dUTPase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
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>d1duna_ b.85.4.1 (A:) Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) {Equine infectious anemia virus [TaxId: 11665]} | Back information, alignment and structure |
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>d1f7da_ b.85.4.1 (A:) Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) {Feline immunodeficiency virus [TaxId: 11673]} | Back information, alignment and structure |
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>d2bsya2 b.85.4.1 (A:121-256) Monomeric viral dUTPase {Epstein-barr virus [TaxId: 10376]} | Back information, alignment and structure |
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>d2bsya1 b.85.4.1 (A:4-116) Monomeric viral dUTPase {Epstein-barr virus [TaxId: 10376]} | Back information, alignment and structure |
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>d3ehwa1 b.85.4.1 (A:24-159) Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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>d1euwa_ b.85.4.1 (A:) Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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>d1sixa_ b.85.4.1 (A:) Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) {Mycobacterium tuberculosis, rv2697c [TaxId: 1773]} | Back information, alignment and structure |
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>d1duna_ b.85.4.1 (A:) Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) {Equine infectious anemia virus [TaxId: 11665]} | Back information, alignment and structure |
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>d1f7da_ b.85.4.1 (A:) Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) {Feline immunodeficiency virus [TaxId: 11673]} | Back information, alignment and structure |
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>d2bsya1 b.85.4.1 (A:4-116) Monomeric viral dUTPase {Epstein-barr virus [TaxId: 10376]} | Back information, alignment and structure |
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>d3ehwa1 b.85.4.1 (A:24-159) Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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>d1sixa_ b.85.4.1 (A:) Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) {Mycobacterium tuberculosis, rv2697c [TaxId: 1773]} | Back information, alignment and structure |
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>d2bsya2 b.85.4.1 (A:121-256) Monomeric viral dUTPase {Epstein-barr virus [TaxId: 10376]} | Back information, alignment and structure |
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>d1euwa_ b.85.4.1 (A:) Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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>d1vyqa1 b.85.4.1 (A:1-159) Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
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>d1vyqa1 b.85.4.1 (A:1-159) Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
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Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 367 | 2'-deoxycytidine 5'-triphosphate deaminase [Candid | ||
2r9q_A_1-174 | 174 | (A:1-174) AGR_C_764P, 2'-deoxycytidine 5'-triphosp | 7e-30 | |
2r9q_A_175-370 | 196 | (A:175-370) AGR_C_764P, 2'-deoxycytidine 5'-tripho | 8e-21 | |
1pkh_A_ | 204 | (A:) Bifunctional deaminase/diphosphatase; DCTP de | 4e-23 | |
3km3_A_ | 206 | (A:) DCTP deaminase, deoxycytidine triphosphate de | 1e-13 | |
1xs1_A_ | 193 | (A:) DCTP deaminase, deoxycytidine triphosphate de | 6e-21 | |
2qxx_A_ | 190 | (A:) DCTP deaminase, deoxycytidine triphosphate de | 6e-20 | |
2yzj_A_ | 169 | (A:) 167AA long hypothetical dutpase; all beta pro | 1e-16 | |
1vyq_A_ | 173 | (A:) Deoxyuridine 5'-triphosphate nucleotidohydrol | 1e-16 | |
2p9o_A_ | 169 | (A:) DUTP pyrophosphatase-like protein; dutpase, m | 1e-15 | |
3hza_A_ | 174 | (A:) Deoxyuridine 5'-triphosphate nucleotidohydrol | 6e-15 | |
3ehw_A_ | 164 | (A:) DUTP pyrophosphatase; jelly-roll, FULL-length | 1e-14 | |
2d4n_A_ | 152 | (A:) DU; jelly roll, hydrolase; HET: UPR; 1.53A {M | 3e-11 | |
3ecy_A_ | 160 | (A:) CG4584-PA, isoform A (bcDNA.LD08534); jelly-r | 3e-14 | |
3f4f_A_ | 167 | (A:) Deoxyuridine 5'-triphosphate nucleotidohydrol | 8e-10 | |
3ca9_A_ | 165 | (A:) Deoxyuridine triphosphatase; dutpase chlorell | 5e-08 | |
2ol1_A_ | 147 | (A:) Deoxyuridine 5'-triphosphate nucleotidohydrol | 0.002 | |
2r9q_A_1-174 | 174 | (A:1-174) AGR_C_764P, 2'-deoxycytidine 5'-triphosp | 4e-05 | |
2r9q_A_175-370 | 196 | (A:175-370) AGR_C_764P, 2'-deoxycytidine 5'-tripho | 1e-26 | |
1pkh_A_ | 204 | (A:) Bifunctional deaminase/diphosphatase; DCTP de | 1e-14 | |
1xs1_A_ | 193 | (A:) DCTP deaminase, deoxycytidine triphosphate de | 4e-16 | |
2qxx_A_ | 190 | (A:) DCTP deaminase, deoxycytidine triphosphate de | 1e-11 | |
3ehw_A_ | 164 | (A:) DUTP pyrophosphatase; jelly-roll, FULL-length | 1e-04 | |
2d4n_A_ | 152 | (A:) DU; jelly roll, hydrolase; HET: UPR; 1.53A {M | 2e-14 | |
3f4f_A_ | 167 | (A:) Deoxyuridine 5'-triphosphate nucleotidohydrol | 6e-10 | |
2ol1_A_ | 147 | (A:) Deoxyuridine 5'-triphosphate nucleotidohydrol | 4e-04 | |
3km3_A_ | 206 | (A:) DCTP deaminase, deoxycytidine triphosphate de | 1e-21 | |
2yzj_A_ | 169 | (A:) 167AA long hypothetical dutpase; all beta pro | 6e-07 | |
1vyq_A_ | 173 | (A:) Deoxyuridine 5'-triphosphate nucleotidohydrol | 2e-04 | |
2p9o_A_ | 169 | (A:) DUTP pyrophosphatase-like protein; dutpase, m | 0.002 | |
3hza_A_ | 174 | (A:) Deoxyuridine 5'-triphosphate nucleotidohydrol | 0.001 | |
1f7d_A_ | 136 | (A:) POL polyprotein; eight stranded beta-barrel, | 3e-09 | |
3ca9_A_ | 165 | (A:) Deoxyuridine triphosphatase; dutpase chlorell | 0.004 | |
1dun_A_ | 134 | (A:) Deoxyuridine 5'-triphosphate nucleoditohydrol | 7e-06 | |
2bsy_A_117-244 | 128 | (A:117-244) Deoxyuridine 5'-triphosphate nucleotid | 5e-05 | |
2baz_A_ | 142 | (A:) YOSS, hypothetical protein BSU20020; homotrim | 1e-04 | |
1f7d_A_ | 136 | (A:) POL polyprotein; eight stranded beta-barrel, | 0.001 | |
2baz_A_ | 142 | (A:) YOSS, hypothetical protein BSU20020; homotrim | 4e-04 |
>2r9q_A (A:1-174) AGR_C_764P, 2'-deoxycytidine 5'-triphosphate deaminase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.20A {Agrobacterium tumefaciens str}Length = 174 | Back alignment and structure |
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Score = 125 bits (316), Expect = 7e-30 Identities = 99/160 (61%), Positives = 115/160 (71%) Query: 4 GVLPDKAIATLAERGDIVSEHPLEKNQIQPASIDLRLSSKAYRVRASFLPNIDGLVSDKI 63 G+L D AI L + SE L+ +Q+QPAS+DLRL SKAYRVRASF+P V DK+ Sbjct: 11 GILADGAIRALFAGDKLKSEADLDVDQVQPASLDLRLGSKAYRVRASFMPGPGTRVIDKL 70 Query: 64 KHFKLREIDLSGGTVLDANCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFARVIGDRS 123 F L E+DLS G VL+ CVYIVPLMESL L +SA ANPKSS GR+D+F RV+ D + Sbjct: 71 NRFSLHEVDLSQGAVLETGCVYIVPLMESLALPADMSASANPKSSTGRLDIFTRVMTDNA 130 Query: 124 QEFDSISPNYSGPLYLEILPRTFPIVVRVGSRLSQIRFVK 163 QEFD I Y+GPLYLEI PRTFPIVVR GSRLSQIRF Sbjct: 131 QEFDKIPAGYTGPLYLEISPRTFPIVVRRGSRLSQIRFRI 170 |
>2r9q_A (A:175-370) AGR_C_764P, 2'-deoxycytidine 5'-triphosphate deaminase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.20A {Agrobacterium tumefaciens str}Length = 196 | Back alignment and structure |
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>1pkh_A (A:) Bifunctional deaminase/diphosphatase; DCTP deaminase, dutpase, DCD-DUT, MJ0430, DCTP, DUTP, hydrolase; 1.42A {Methanocaldococcus jannaschii}Length = 204 | Back alignment and structure |
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>3km3_A (A:) DCTP deaminase, deoxycytidine triphosphate deaminase; ssgcid, NIH, niaid, SBRI, UW, decode, iodide phasing, hydrolase; 2.10A {Anaplasma phagocytophilum HZ}Length = 206 | Back alignment and structure |
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>1xs1_A (A:) DCTP deaminase, deoxycytidine triphosphate deaminase; nucleotide metabolism, trimer, hydrolase; HET: DUT; 1.80A {Escherichia coli}Length = 193 | Back alignment and structure |
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>2qxx_A (A:) DCTP deaminase, deoxycytidine triphosphate deaminase; distorted beta barrel, hydrolase, nucleotide metabolism; HET: TTP 1PE; 2.00A {Mycobacterium tuberculosis H37RV} PDB: 2qlp_A*Length = 190 | Back alignment and structure |
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>2yzj_A (A:) 167AA long hypothetical dutpase; all beta proteins, hypothetical protein, NPPSFA; HET: DUD; 1.66A {Sulfolobus tokodaii} PDB: 2zdc_ALength = 169 | Back alignment and structure |
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>1vyq_A (A:) Deoxyuridine 5'-triphosphate nucleotidohydrolase; drug design, dutpase, deoxyuridine nucleotidohydrolase, malaria; HET: DUX; 2.4A {Plasmodium falciparum}Length = 173 | Back alignment and structure |
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>2p9o_A (A:) DUTP pyrophosphatase-like protein; dutpase, magnesium binding, hydrolase; 2.00A {Arabidopsis thaliana} PDB: 2pc5_ALength = 169 | Back alignment and structure |
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>3hza_A (A:) Deoxyuridine 5'-triphosphate nucleotidohydrolase; jelly roll, domain swapping, nucleotide metabolism; HET: DUP; 1.20A {Mycobacterium tuberculosis} PDB: 1six_A* 1slh_A* 1sm8_A* 1smc_A* 1snf_A* 2py4_A* 3h6d_A* 3i93_A* 1mq7_A 1sjn_A*Length = 174 | Back alignment and structure |
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>3ehw_A (A:) DUTP pyrophosphatase; jelly-roll, FULL-length C-terminal ARM, enzyme-ligand complex, hydrolase; HET: DUP; 1.80A {Homo sapiens}Length = 164 | Back alignment and structure |
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>2d4n_A (A:) DU; jelly roll, hydrolase; HET: UPR; 1.53A {Mason-pfizer monkey virus} PDB: 2d4m_A 2d4l_A*Length = 152 | Back alignment and structure |
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>3ecy_A (A:) CG4584-PA, isoform A (bcDNA.LD08534); jelly-roll, dimeric assembly, hydrolase; 1.88A {Drosophila melanogaster}Length = 160 | Back alignment and structure |
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>3f4f_A (A:) Deoxyuridine 5'-triphosphate nucleotidohydrolase; trimer, beta barrel, UMP, product complex, DUTP pyrophosphatase, DITP; HET: UMP; 2.00A {Saccharomyces cerevisiae} PDB: 3hhq_ALength = 167 | Back alignment and structure |
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>3ca9_A (A:) Deoxyuridine triphosphatase; dutpase chlorella virus, hydrolase; HET: DUD; 3.00A {Paramecium bursaria chlorella VIRUSIL3A}Length = 165 | Back alignment and structure |
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>2ol1_A (A:) Deoxyuridine 5'-triphosphate nucleotidohydrolase; fold, jelly-roll, superfamily, dutpase-like; HET: UMP; 1.80A {Vaccinia virus} PDB: 2oke_A* 2okd_A* 2ol0_A* 2okb_ALength = 147 | Back alignment and structure |
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>2r9q_A (A:1-174) AGR_C_764P, 2'-deoxycytidine 5'-triphosphate deaminase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.20A {Agrobacterium tumefaciens str}Length = 174 | Back alignment and structure |
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>2r9q_A (A:175-370) AGR_C_764P, 2'-deoxycytidine 5'-triphosphate deaminase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.20A {Agrobacterium tumefaciens str}Length = 196 | Back alignment and structure |
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>1pkh_A (A:) Bifunctional deaminase/diphosphatase; DCTP deaminase, dutpase, DCD-DUT, MJ0430, DCTP, DUTP, hydrolase; 1.42A {Methanocaldococcus jannaschii}Length = 204 | Back alignment and structure |
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>1xs1_A (A:) DCTP deaminase, deoxycytidine triphosphate deaminase; nucleotide metabolism, trimer, hydrolase; HET: DUT; 1.80A {Escherichia coli}Length = 193 | Back alignment and structure |
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>2qxx_A (A:) DCTP deaminase, deoxycytidine triphosphate deaminase; distorted beta barrel, hydrolase, nucleotide metabolism; HET: TTP 1PE; 2.00A {Mycobacterium tuberculosis H37RV} PDB: 2qlp_A*Length = 190 | Back alignment and structure |
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>3ehw_A (A:) DUTP pyrophosphatase; jelly-roll, FULL-length C-terminal ARM, enzyme-ligand complex, hydrolase; HET: DUP; 1.80A {Homo sapiens}Length = 164 | Back alignment and structure |
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>2d4n_A (A:) DU; jelly roll, hydrolase; HET: UPR; 1.53A {Mason-pfizer monkey virus} PDB: 2d4m_A 2d4l_A*Length = 152 | Back alignment and structure |
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>3f4f_A (A:) Deoxyuridine 5'-triphosphate nucleotidohydrolase; trimer, beta barrel, UMP, product complex, DUTP pyrophosphatase, DITP; HET: UMP; 2.00A {Saccharomyces cerevisiae} PDB: 3hhq_ALength = 167 | Back alignment and structure |
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>2ol1_A (A:) Deoxyuridine 5'-triphosphate nucleotidohydrolase; fold, jelly-roll, superfamily, dutpase-like; HET: UMP; 1.80A {Vaccinia virus} PDB: 2oke_A* 2okd_A* 2ol0_A* 2okb_ALength = 147 | Back alignment and structure |
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>3km3_A (A:) DCTP deaminase, deoxycytidine triphosphate deaminase; ssgcid, NIH, niaid, SBRI, UW, decode, iodide phasing, hydrolase; 2.10A {Anaplasma phagocytophilum HZ}Length = 206 | Back alignment and structure |
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