254780485
biotin synthase
| GeneID in NCBI database: | 8209474 | Locus tag: | CLIBASIA_01860 |
| Protein GI in NCBI database: | 254780485 | Protein Accession: | YP_003064898.1 |
| Gene range: | +(407548, 408534) | Protein Length: | 328aa |
| Gene description: | biotin synthase | ||
| COG prediction: | [H] Biotin synthase and related enzymes | ||
| KEGG prediction: | biotin synthase; K01012 biotin synthetase [EC:2.8.1.6] | ||
| SEED prediction: | Biotin synthase (EC 2.8.1.6) | ||
| Pathway involved in KEGG: | Biotin metabolism [PATH:las00780] | ||
| Subsystem involved in SEED: | Biotin biosynthesis | ||
| sequence | sequence profile | ||
Prediction of Local Sequence Properties
| Source | Summary | Result |
|---|
|
|
Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
| Identity | Alignment graph | Length | Definition | Round | E-value |
| Target | 328 | biotin synthase [Candidatus Liberibacter asiaticus str. | |||
| 315122058 | 328 | biotin synthase [Candidatus Liberibacter solanacearum C | 1 | 1e-169 | |
| 153010147 | 336 | biotin synthase [Ochrobactrum anthropi ATCC 49188] Leng | 1 | 1e-128 | |
| 239833335 | 336 | biotin synthase [Ochrobactrum intermedium LMG 3301] Len | 1 | 1e-127 | |
| 306845848 | 346 | biotin synthase [Brucella sp. BO1] Length = 346 | 1 | 1e-126 | |
| 306840591 | 346 | biotin synthase [Brucella sp. BO2] Length = 346 | 1 | 1e-125 | |
| 254720489 | 346 | biotin synthase [Brucella sp. 83/13] Length = 346 | 1 | 1e-125 | |
| 227823052 | 339 | biotin synthase BioB [Sinorhizobium fredii NGR234] Leng | 1 | 1e-125 | |
| 260544874 | 342 | BioB protein [Brucella abortus NCTC 8038] Length = 342 | 1 | 1e-124 | |
| 17989120 | 346 | biotin synthase [Brucella melitensis bv. 1 str. 16M] Le | 1 | 1e-124 | |
| 148558280 | 346 | biotin synthase [Brucella ovis ATCC 25840] Length = 346 | 1 | 1e-124 |
| >gi|315122058|ref|YP_004062547.1| biotin synthase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 328 | Back alignment and organism information |
|---|
Score = 598 bits (1542), Expect = e-169, Method: Compositional matrix adjust.
Identities = 282/327 (86%), Positives = 306/327 (93%)
Query: 1 MSRSTVVPEENPTKKPKVWTSKEVFQIYNMPFNDLLFWSHTVHRKNFEPNHIQLSKLLNI 60
M +S ++ KPK WT KEV QIY MPFNDLLFWSHTVHRKNFEPNHIQLSKLLNI
Sbjct: 1 MCKSNATSKKECDNKPKTWTFKEVLQIYQMPFNDLLFWSHTVHRKNFEPNHIQLSKLLNI 60
Query: 61 KTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKER 120
KTGGCPE+CGYCNQSVHNK+KLKASKL++VDQVLKEA+ AKENGATRYCMGAAWREPK+R
Sbjct: 61 KTGGCPEDCGYCNQSVHNKTKLKASKLLDVDQVLKEAQLAKENGATRYCMGAAWREPKKR 120
Query: 121 DLSIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDTSERFYPHVTTTH 180
D+++IVDMI+GVKSLGLETCMTLGMLS EQAQ LS+AGLDYYNHNIDTSERFYP+V TTH
Sbjct: 121 DIAVIVDMIRGVKSLGLETCMTLGMLSSEQAQELSEAGLDYYNHNIDTSERFYPNVITTH 180
Query: 181 TFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIP 240
TFE+RLQTLENVRKSGIKVCCGGILGLGE DDRIDML+TLANL+TPPESIPINLLIPIP
Sbjct: 181 TFENRLQTLENVRKSGIKVCCGGILGLGETTDDRIDMLITLANLATPPESIPINLLIPIP 240
Query: 241 GSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGD 300
GSKF ENKKVDPIE+VRII+VARILMPKSRLRLAAGR MMSDELQALCFFSGANSIFVGD
Sbjct: 241 GSKFSENKKVDPIEYVRIIAVARILMPKSRLRLAAGRVMMSDELQALCFFSGANSIFVGD 300
Query: 301 TLLTAKNPSYNKDTILFNRLGLIPDLS 327
TLLTAKNP+YNKDTILF+RLGL+PDL+
Sbjct: 301 TLLTAKNPNYNKDTILFDRLGLMPDLN 327
|
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|153010147|ref|YP_001371361.1| biotin synthase [Ochrobactrum anthropi ATCC 49188] Length = 336 | Back alignment and organism information |
|---|
Score = 462 bits (1189), Expect = e-128, Method: Compositional matrix adjust.
Identities = 210/308 (68%), Positives = 255/308 (82%)
Query: 18 VWTSKEVFQIYNMPFNDLLFWSHTVHRKNFEPNHIQLSKLLNIKTGGCPENCGYCNQSVH 77
WT +Y++PFNDLLF + VHR NF+PN +QLSKLLNIKTGGCPE+CGYC+QS H
Sbjct: 23 AWTLASARLLYDLPFNDLLFEAQNVHRANFDPNRVQLSKLLNIKTGGCPEDCGYCSQSAH 82
Query: 78 NKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGL 137
+ S LKASKL+++D VL+EA+ AK++GATRYCMGAAWR PK RD I +M+K VK+LGL
Sbjct: 83 HASGLKASKLMSLDTVLEEAQKAKDSGATRYCMGAAWRSPKPRDEPAIAEMVKQVKALGL 142
Query: 138 ETCMTLGMLSFEQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGI 197
ETCMTLGMLS +QAQ ++AGLDYYNHNIDTSERFYP V TT +F+DRL+TL +VR++GI
Sbjct: 143 ETCMTLGMLSPDQAQTFAEAGLDYYNHNIDTSERFYPQVITTRSFDDRLETLAHVREAGI 202
Query: 198 KVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEHVR 257
KVC GGILGLGE DDRIDML+TLANL TPPES+PIN+LIP+PGS+ E+ VDPI VR
Sbjct: 203 KVCSGGILGLGETEDDRIDMLVTLANLPTPPESVPINMLIPMPGSRLEKASPVDPIAFVR 262
Query: 258 IISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYNKDTILF 317
II++AR++MP+S +RL AGR MSDE+QALCFF+GANSIF+GDTLLTA NP ++DT L
Sbjct: 263 IIALARLMMPQSHVRLTAGRNSMSDEMQALCFFAGANSIFIGDTLLTAANPGEDRDTSLM 322
Query: 318 NRLGLIPD 325
RLGL D
Sbjct: 323 RRLGLTAD 330
|
Species: Ochrobactrum anthropi Genus: Ochrobactrum Family: Brucellaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|239833335|ref|ZP_04681663.1| biotin synthase [Ochrobactrum intermedium LMG 3301] Length = 336 | Back alignment and organism information |
|---|
Score = 459 bits (1181), Expect = e-127, Method: Compositional matrix adjust.
Identities = 206/308 (66%), Positives = 254/308 (82%)
Query: 18 VWTSKEVFQIYNMPFNDLLFWSHTVHRKNFEPNHIQLSKLLNIKTGGCPENCGYCNQSVH 77
WT +Y +PFNDLL + +VHR NF+PN +QLSKLLNIKTGGCPE+CGYC+QS H
Sbjct: 23 AWTRASARLLYELPFNDLLLEAQSVHRANFDPNRVQLSKLLNIKTGGCPEDCGYCSQSAH 82
Query: 78 NKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGL 137
+ S LKAS+L+++D VL+EA+ AK++GATRYCMGAAWR PK RD IV+M+K VK+LGL
Sbjct: 83 HASGLKASRLMSLDTVLEEAQKAKDSGATRYCMGAAWRSPKTRDEPAIVEMVKQVKALGL 142
Query: 138 ETCMTLGMLSFEQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGI 197
ETCMTLGMLS +QAQ ++AGLDYYNHNIDTSERFYP V TT +F+DRL+TL +VR++GI
Sbjct: 143 ETCMTLGMLSPDQAQTFAEAGLDYYNHNIDTSERFYPQVITTRSFDDRLETLTHVREAGI 202
Query: 198 KVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEHVR 257
KVC GGILGLGE DDR+DML+TLANL PPES+PIN+LIP+PGS+ E+ VDPI VR
Sbjct: 203 KVCSGGILGLGETEDDRVDMLVTLANLPIPPESVPINMLIPMPGSRLEKASPVDPIAFVR 262
Query: 258 IISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYNKDTILF 317
II++AR++MP+S +RL AGR+ MSDE+QALCFF+GANSIF+GD LLTA NP ++DT L
Sbjct: 263 IIALARLMMPQSHVRLTAGRSSMSDEMQALCFFAGANSIFIGDMLLTAANPGEDRDTSLM 322
Query: 318 NRLGLIPD 325
RLGL D
Sbjct: 323 RRLGLTAD 330
|
Species: Ochrobactrum intermedium Genus: Ochrobactrum Family: Brucellaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|306845848|ref|ZP_07478416.1| biotin synthase [Brucella sp. BO1] Length = 346 | Back alignment and organism information |
|---|
Score = 455 bits (1170), Expect = e-126, Method: Compositional matrix adjust.
Identities = 203/304 (66%), Positives = 253/304 (83%)
Query: 19 WTSKEVFQIYNMPFNDLLFWSHTVHRKNFEPNHIQLSKLLNIKTGGCPENCGYCNQSVHN 78
W+++E IYN+PFNDLLF +H++HR+NF+PN IQLSKLLNIKTGGCPE+CGYC+QS
Sbjct: 35 WSAEEARAIYNLPFNDLLFRAHSLHRENFDPNRIQLSKLLNIKTGGCPEDCGYCSQSASA 94
Query: 79 KSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLE 138
++ LKASKL+ ++ VL+EA+ AK GATRYCMGAAWR PK+RD+ + MI+ VK++GLE
Sbjct: 95 ENGLKASKLMGIETVLEEARKAKAAGATRYCMGAAWRSPKDRDMPALTHMIESVKAMGLE 154
Query: 139 TCMTLGMLSFEQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIK 198
TCMTLGML ++A+ L+ AGLDYYNHNIDTSERFYP V TT +FEDRL TL NVR +GIK
Sbjct: 155 TCMTLGMLDSDKAEKLADAGLDYYNHNIDTSERFYPAVITTRSFEDRLDTLANVRNAGIK 214
Query: 199 VCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEHVRI 258
VC GGILGLGE +DRIDMLLTLANL PPES+PIN+LIP+PG++ VDP+E +R+
Sbjct: 215 VCSGGILGLGEGAEDRIDMLLTLANLPEPPESVPINMLIPMPGTRLANAAPVDPLEFIRV 274
Query: 259 ISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYNKDTILFN 318
+++ARILMPKS +RL AGR MSDE+QALCFF+GANS+F+GDTLLTA NPS ++DT L
Sbjct: 275 VALARILMPKSHVRLTAGRTAMSDEMQALCFFAGANSLFMGDTLLTAANPSDDRDTSLLR 334
Query: 319 RLGL 322
RLG+
Sbjct: 335 RLGI 338
|
Species: Brucella sp. BO1 Genus: Brucella Family: Brucellaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|306840591|ref|ZP_07473346.1| biotin synthase [Brucella sp. BO2] Length = 346 | Back alignment and organism information |
|---|
Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust.
Identities = 203/304 (66%), Positives = 252/304 (82%)
Query: 19 WTSKEVFQIYNMPFNDLLFWSHTVHRKNFEPNHIQLSKLLNIKTGGCPENCGYCNQSVHN 78
W+++E IYN+PFNDLLF +H +HR+NF+PN IQLSKLLNIKTGGCPE+CGYC+QS
Sbjct: 35 WSAEEARAIYNLPFNDLLFRAHGLHRENFDPNRIQLSKLLNIKTGGCPEDCGYCSQSASA 94
Query: 79 KSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLE 138
++ LKASKL+ ++ VL+EA+ AK GATRYCMGAAWR PK+RD+ + MI+ VK++GLE
Sbjct: 95 ENGLKASKLMEIETVLEEARKAKAAGATRYCMGAAWRSPKDRDMPALTHMIESVKAMGLE 154
Query: 139 TCMTLGMLSFEQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIK 198
TCMTLGML ++A+ L+ AGLDYYNHNIDTSERFYP V TT +FEDRL TL NVR +GIK
Sbjct: 155 TCMTLGMLDSDKAEKLADAGLDYYNHNIDTSERFYPAVITTRSFEDRLDTLANVRNAGIK 214
Query: 199 VCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEHVRI 258
VC GGILGLGE +DRIDMLLTLANL PPES+PIN+LIP+PG++ VDP+E +R+
Sbjct: 215 VCSGGILGLGEGAEDRIDMLLTLANLPEPPESVPINMLIPMPGTRLANAAPVDPLEFIRV 274
Query: 259 ISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYNKDTILFN 318
+++ARILMPKS +RL AGR MSDE+QALCFF+GANS+F+GDTLLTA NPS ++DT L
Sbjct: 275 VALARILMPKSHVRLTAGRTAMSDEMQALCFFAGANSLFMGDTLLTAANPSDDRDTSLLR 334
Query: 319 RLGL 322
RLG+
Sbjct: 335 RLGI 338
|
Species: Brucella sp. BO2 Genus: Brucella Family: Brucellaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|254720489|ref|ZP_05182300.1| biotin synthase [Brucella sp. 83/13] Length = 346 | Back alignment and organism information |
|---|
Score = 452 bits (1162), Expect = e-125, Method: Compositional matrix adjust.
Identities = 201/304 (66%), Positives = 253/304 (83%)
Query: 19 WTSKEVFQIYNMPFNDLLFWSHTVHRKNFEPNHIQLSKLLNIKTGGCPENCGYCNQSVHN 78
W+++E IYN+PFNDLLF +H++HR+NF+PN IQLSKLLNIKTGGCPE+CGYC+QS
Sbjct: 35 WSAEEARAIYNLPFNDLLFRAHSLHRENFDPNRIQLSKLLNIKTGGCPEDCGYCSQSASA 94
Query: 79 KSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLE 138
++ LKASKL+ ++ VL+EA+ AK GATRYCMGAAWR PK+RD+ + MI+ VK++GLE
Sbjct: 95 ENGLKASKLMEIETVLEEARKAKAAGATRYCMGAAWRSPKDRDMPALTHMIESVKAMGLE 154
Query: 139 TCMTLGMLSFEQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIK 198
TCMTLGML ++A+ L+ AGLDYYNHNIDTSERFYP V TT +FEDRL TL NVR +GIK
Sbjct: 155 TCMTLGMLDSDKAEKLADAGLDYYNHNIDTSERFYPAVITTRSFEDRLDTLANVRNAGIK 214
Query: 199 VCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEHVRI 258
VC GGILGLGE +DRIDML+TLANL PPES+PIN+LIP+PG++ + VDP+E VR+
Sbjct: 215 VCSGGILGLGEEAEDRIDMLVTLANLPEPPESVPINMLIPMPGTRMAKAAPVDPLEFVRV 274
Query: 259 ISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYNKDTILFN 318
+++ARILMPKS +RL AGR MSDE+QALCFF+GANS+F+GDTLLTA NP ++D+ L
Sbjct: 275 VALARILMPKSHVRLTAGRTAMSDEMQALCFFAGANSLFMGDTLLTAANPGDDRDSSLLR 334
Query: 319 RLGL 322
RLG+
Sbjct: 335 RLGI 338
|
Species: Brucella sp. 83/13 Genus: Brucella Family: Brucellaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|227823052|ref|YP_002827024.1| biotin synthase BioB [Sinorhizobium fredii NGR234] Length = 339 | Back alignment and organism information |
|---|
Score = 451 bits (1161), Expect = e-125, Method: Compositional matrix adjust.
Identities = 204/315 (64%), Positives = 252/315 (80%)
Query: 10 ENPTKKPKVWTSKEVFQIYNMPFNDLLFWSHTVHRKNFEPNHIQLSKLLNIKTGGCPENC 69
EN T W E +IYN+PFNDLLF + +VHR +F+PN +Q+S+LL+IKTGGC E+C
Sbjct: 13 ENSTAGGAHWNLVEARKIYNLPFNDLLFRAQSVHRAHFDPNAVQMSRLLSIKTGGCAEDC 72
Query: 70 GYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMI 129
GYC+QS H + LKASKL+ V++V+ EA+ AKE GATRYCMGAAWR PKERD+ +IV M+
Sbjct: 73 GYCSQSAHYPTGLKASKLMEVERVIAEARRAKEGGATRYCMGAAWRSPKERDMEVIVAMV 132
Query: 130 KGVKSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTL 189
+GV+SLG+E CMTLGMLS +Q++ L+ AGLDYYNHN+DTSERFY + TT TF DRL TL
Sbjct: 133 RGVRSLGMEACMTLGMLSPQQSERLADAGLDYYNHNVDTSERFYSEIITTRTFADRLDTL 192
Query: 190 ENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKK 249
NVR++GIKVC GGILG+GE ++DRI ML+TLANL PES+PIN+LIPIPGSK +
Sbjct: 193 ANVREAGIKVCAGGILGMGETVEDRISMLVTLANLPAAPESVPINMLIPIPGSKLADAAP 252
Query: 250 VDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPS 309
VDPI+ VR I++ARILMP S +RL+AGR MSDE+QALCFF+GANSIFVG+TLLTA NP
Sbjct: 253 VDPIDFVRTIALARILMPLSHVRLSAGRTEMSDEMQALCFFAGANSIFVGETLLTADNPG 312
Query: 310 YNKDTILFNRLGLIP 324
+ D LF RLGL P
Sbjct: 313 EDHDAALFRRLGLKP 327
|
Species: Sinorhizobium fredii Genus: Sinorhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|260544874|ref|ZP_05820695.1| BioB protein [Brucella abortus NCTC 8038] Length = 342 | Back alignment and organism information |
|---|
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 201/304 (66%), Positives = 252/304 (82%)
Query: 19 WTSKEVFQIYNMPFNDLLFWSHTVHRKNFEPNHIQLSKLLNIKTGGCPENCGYCNQSVHN 78
W+++E IYN+PFNDLLF +H +HR+NF+PN IQLSKLLNIKTGGCPE+CGYC+QS
Sbjct: 31 WSAEEARAIYNLPFNDLLFRAHGLHRENFDPNRIQLSKLLNIKTGGCPEDCGYCSQSASA 90
Query: 79 KSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLE 138
++ LKASKL+ ++ VL+EA+ AK GATRYCMGAAWR PK+RD+ + MI+ VK++GLE
Sbjct: 91 ENGLKASKLMEIETVLEEARKAKAAGATRYCMGAAWRSPKDRDMPALTHMIESVKAMGLE 150
Query: 139 TCMTLGMLSFEQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIK 198
TCMTLGML ++A+ L+ AGLDYYNHNIDTSERFYP V TT +FEDRL TL NVR +GIK
Sbjct: 151 TCMTLGMLDSDKAEKLADAGLDYYNHNIDTSERFYPAVITTRSFEDRLDTLANVRNAGIK 210
Query: 199 VCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEHVRI 258
VC GGILGLGE +DRIDML+TLANL PPES+PIN+LIP+PG++ + VDP+E VR+
Sbjct: 211 VCSGGILGLGEEAEDRIDMLVTLANLPEPPESVPINMLIPMPGTRLAKAAPVDPLEFVRV 270
Query: 259 ISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYNKDTILFN 318
+++ARILMPKS +RL AGR MSDE+QALCFF+GANS+F+GDTLLTA NP ++D+ L
Sbjct: 271 VALARILMPKSHVRLTAGRTAMSDEMQALCFFAGANSLFMGDTLLTAANPGDDRDSSLLR 330
Query: 319 RLGL 322
RLG+
Sbjct: 331 RLGI 334
|
Species: Brucella abortus Genus: Brucella Family: Brucellaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|17989120|ref|NP_541753.1| biotin synthase [Brucella melitensis bv. 1 str. 16M] Length = 346 | Back alignment and organism information |
|---|
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 201/304 (66%), Positives = 252/304 (82%)
Query: 19 WTSKEVFQIYNMPFNDLLFWSHTVHRKNFEPNHIQLSKLLNIKTGGCPENCGYCNQSVHN 78
W+++E IYN+PFNDLLF +H +HR+NF+PN IQLSKLLNIKTGGCPE+CGYC+QS
Sbjct: 35 WSAEEARAIYNLPFNDLLFRAHGLHRENFDPNRIQLSKLLNIKTGGCPEDCGYCSQSASA 94
Query: 79 KSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLE 138
++ LKASKL+ ++ VL+EA+ AK GATRYCMGAAWR PK+RD+ + MI+ VK++GLE
Sbjct: 95 ENGLKASKLMEIETVLEEARKAKAAGATRYCMGAAWRSPKDRDMPALTHMIESVKAMGLE 154
Query: 139 TCMTLGMLSFEQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIK 198
TCMTLGML ++A+ L+ AGLDYYNHNIDTSERFYP V TT +FEDRL TL NVR +GIK
Sbjct: 155 TCMTLGMLDSDKAEKLADAGLDYYNHNIDTSERFYPAVITTRSFEDRLDTLANVRNAGIK 214
Query: 199 VCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEHVRI 258
VC GGILGLGE +DRIDML+TLANL PPES+PIN+LIP+PG++ + VDP+E VR+
Sbjct: 215 VCSGGILGLGEEAEDRIDMLVTLANLPEPPESVPINMLIPMPGTRLAKAAPVDPLEFVRV 274
Query: 259 ISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYNKDTILFN 318
+++ARILMPKS +RL AGR MSDE+QALCFF+GANS+F+GDTLLTA NP ++D+ L
Sbjct: 275 VALARILMPKSHVRLTAGRTAMSDEMQALCFFAGANSLFMGDTLLTAANPGDDRDSSLLR 334
Query: 319 RLGL 322
RLG+
Sbjct: 335 RLGI 338
|
Species: Brucella melitensis Genus: Brucella Family: Brucellaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|148558280|ref|YP_001257466.1| biotin synthase [Brucella ovis ATCC 25840] Length = 346 | Back alignment and organism information |
|---|
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 201/304 (66%), Positives = 252/304 (82%)
Query: 19 WTSKEVFQIYNMPFNDLLFWSHTVHRKNFEPNHIQLSKLLNIKTGGCPENCGYCNQSVHN 78
W+++E IYN+PFNDLLF +H +HR+NF+PN IQLSKLLNIKTGGCPE+CGYC+QS
Sbjct: 35 WSAEEARAIYNLPFNDLLFRAHGLHRENFDPNRIQLSKLLNIKTGGCPEDCGYCSQSASA 94
Query: 79 KSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLE 138
++ LKASKL+ ++ VL+EA+ AK GATRYCMGAAWR PK+RD+ + MI+ VK++GLE
Sbjct: 95 ENGLKASKLMEIETVLEEARKAKAAGATRYCMGAAWRSPKDRDMPALTHMIESVKAMGLE 154
Query: 139 TCMTLGMLSFEQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIK 198
TCMTLGML ++A+ L+ AGLDYYNHNIDTSERFYP V TT +FEDRL TL NVR +GIK
Sbjct: 155 TCMTLGMLDSDKAEKLADAGLDYYNHNIDTSERFYPAVITTRSFEDRLDTLANVRNAGIK 214
Query: 199 VCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEHVRI 258
VC GGILGLGE +DRIDML+TLANL PPES+PIN+LIP+PG++ + VDP+E VR+
Sbjct: 215 VCSGGILGLGEETEDRIDMLVTLANLPEPPESVPINMLIPMPGTRLAKAAPVDPLEFVRV 274
Query: 259 ISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYNKDTILFN 318
+++ARILMPKS +RL AGR MSDE+QALCFF+GANS+F+GDTLLTA NP ++D+ L
Sbjct: 275 VALARILMPKSHVRLTAGRTAMSDEMQALCFFAGANSLFMGDTLLTAANPGDDRDSSLLR 334
Query: 319 RLGL 322
RLG+
Sbjct: 335 RLGI 338
|
Species: Brucella ovis Genus: Brucella Family: Brucellaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
| Identity | Alignment graph | Length | Definition | E-value |
| Target | 328 | biotin synthase [Candidatus Liberibacter asiaticus str. | ||
| PRK15108 | 345 | PRK15108, PRK15108, biotin synthase; Provisional | 1e-118 | |
| PLN02389 | 379 | PLN02389, PLN02389, biotin synthase | 1e-112 | |
| TIGR00433 | 296 | TIGR00433, bioB, biotin synthetase | 1e-109 | |
| KOG2900 | 380 | KOG2900, KOG2900, KOG2900, Biotin synthase [Coenzyme tr | 6e-99 | |
| PRK06256 | 336 | PRK06256, PRK06256, biotin synthase; Validated | 2e-83 | |
| COG0502 | 335 | COG0502, BioB, Biotin synthase and related enzymes [Coe | 1e-113 | |
| PRK08508 | 279 | PRK08508, PRK08508, biotin synthase; Provisional | 4e-58 | |
| COG1060 | 370 | COG1060, ThiH, Thiamine biosynthesis enzyme ThiH and re | 7e-15 | |
| smart00729 | 216 | smart00729, Elp3, Elongator protein 3, MiaB family, Rad | 4e-30 | |
| cd01335 | 204 | cd01335, Radical_SAM, Radical SAM superfamily | 4e-15 | |
| PRK07094 | 323 | PRK07094, PRK07094, biotin synthase; Provisional | 4e-08 | |
| COG1032 | 490 | COG1032, COG1032, Fe-S oxidoreductase [Energy productio | 1e-06 | |
| TIGR03550 | 322 | TIGR03550, F420_cofG, 7,8-didemethyl-8-hydroxy-5-deazar | 8e-05 | |
| PRK09240 | 371 | PRK09240, thiH, thiamine biosynthesis protein ThiH; Rev | 1e-04 | |
| PRK06245 | 336 | PRK06245, cofG, FO synthase subunit 1; Reviewed | 1e-04 | |
| TIGR02351 | 366 | TIGR02351, thiH, thiazole biosynthesis protein ThiH | 2e-04 | |
| COG1180 | 260 | COG1180, PflA, Pyruvate-formate lyase-activating enzyme | 0.003 | |
| smart00876 | 94 | smart00876, BATS, Biotin and Thiamin Synthesis associat | 3e-28 | |
| pfam06968 | 93 | pfam06968, BATS, Biotin and Thiamin Synthesis associate | 5e-26 | |
| pfam04055 | 165 | pfam04055, Radical_SAM, Radical SAM superfamily | 4e-19 | |
| COG0320 | 306 | COG0320, LipA, Lipoate synthase [Coenzyme metabolism] | 3e-06 | |
| TIGR00510 | 302 | TIGR00510, lipA, lipoate synthase | 3e-06 | |
| TIGR01212 | 302 | TIGR01212, TIGR01212, radical SAM protein, TIGR01212 fa | 7e-05 | |
| PRK12928 | 290 | PRK12928, PRK12928, lipoyl synthase; Provisional | 8e-05 | |
| PRK05481 | 289 | PRK05481, PRK05481, lipoyl synthase; Provisional | 5e-04 | |
| KOG2672 | 360 | KOG2672, KOG2672, KOG2672, Lipoate synthase [Coenzyme t | 8e-04 | |
| COG1242 | 312 | COG1242, COG1242, Predicted Fe-S oxidoreductase [Genera | 0.001 | |
| COG1856 | 275 | COG1856, COG1856, Uncharacterized homolog of biotin syn | 7e-06 |
| >gnl|CDD|185063 PRK15108, PRK15108, biotin synthase; Provisional | Back alignment and domain information |
|---|
Score = 420 bits (1082), Expect = e-118
Identities = 167/306 (54%), Positives = 226/306 (73%)
Query: 19 WTSKEVFQIYNMPFNDLLFWSHTVHRKNFEPNHIQLSKLLNIKTGGCPENCGYCNQSVHN 78
WT +V +++ P +LLF + VHR++F+P +Q+S LL+IKTG CPE+C YC QS
Sbjct: 7 WTLSQVTELFEKPLLELLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSSRY 66
Query: 79 KSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLE 138
K+ L+A +L+ V+QVL+ A+ AK G+TR+CMGAAW+ P ERD+ + M++GVK++GLE
Sbjct: 67 KTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLE 126
Query: 139 TCMTLGMLSFEQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIK 198
TCMTLG LS QAQ L+ AGLDYYNHN+DTS FY ++ TT T+++RL TLE VR +GIK
Sbjct: 127 TCMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIK 186
Query: 199 VCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEHVRI 258
VC GGI+GLGE + DR +LL LANL TPPES+PIN+L+ + G+ +N VD + +R
Sbjct: 187 VCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRT 246
Query: 259 ISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYNKDTILFN 318
I+VARI+MP S +RL+AGR M+++ QA+CF +GANSIF G LLT NP +KD LF
Sbjct: 247 IAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFR 306
Query: 319 RLGLIP 324
+LGL P
Sbjct: 307 KLGLNP 312
|
Length = 345 |
| >gnl|CDD|178013 PLN02389, PLN02389, biotin synthase | Back alignment and domain information |
|---|
Score = 399 bits (1026), Expect = e-112
Identities = 156/308 (50%), Positives = 213/308 (69%), Gaps = 2/308 (0%)
Query: 19 WTSKEVFQIYNMPFNDLLFWSHTVHRKNFEPNHIQLSKLLNIKTGGCPENCGYCNQSVHN 78
WT E+ ++Y+ P DLLF VHR +P +Q LL+IKTGGC E+C YC QS
Sbjct: 47 WTRDEIKEVYDSPLLDLLFHGAQVHRHAHDPREVQQCTLLSIKTGGCSEDCSYCPQSSRY 106
Query: 79 KSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREP--KERDLSIIVDMIKGVKSLG 136
+ +KA KL++ D VL+ AK AKE G+TR+CMGAAWR+ ++ + + I++ +K ++ +G
Sbjct: 107 DTGVKAQKLMSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGMG 166
Query: 137 LETCMTLGMLSFEQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSG 196
+E C TLGML EQA L +AGL YNHN+DTS +YP+V TT +++DRL+TLE VR++G
Sbjct: 167 MEVCCTLGMLEKEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYDDRLETLEAVREAG 226
Query: 197 IKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEHV 256
I VC GGI+GLGE +DR+ +L TLA L PES+PIN L+ + G+ E+ K V+ E V
Sbjct: 227 ISVCSGGIIGLGEAEEDRVGLLHTLATLPEHPESVPINALVAVKGTPLEDQKPVEIWEMV 286
Query: 257 RIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYNKDTIL 316
R+I+ ARI+MPK+ +RL+AGR S QALCF +GANSIF GD LLT N ++ D +
Sbjct: 287 RMIATARIVMPKAMVRLSAGRVRFSMAEQALCFLAGANSIFTGDKLLTTPNNDFDADQAM 346
Query: 317 FNRLGLIP 324
F LGLIP
Sbjct: 347 FKELGLIP 354
|
Length = 379 |
| >gnl|CDD|161876 TIGR00433, bioB, biotin synthetase | Back alignment and domain information |
|---|
Score = 389 bits (1000), Expect = e-109
Identities = 151/298 (50%), Positives = 216/298 (72%), Gaps = 4/298 (1%)
Query: 27 IYNMPFNDLLFWSHTVHRKNFEPNHIQLSKLLNIKTGGCPENCGYCNQSVHNKSKLKASK 86
++ P DLL+ + +HRK+F+P +QL ++NIK+GGCPE+C YC+QS +K+ L +
Sbjct: 1 LFETPLLDLLYEAFQIHRKHFDPRKVQLCTIMNIKSGGCPEDCKYCSQSSRSKTGLPIER 60
Query: 87 LINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVD-MIKGVKSLGLETCMTLGM 145
L VD+VL+EA+ AK GATR+C+ A+ R PK+R+ V+ M++ V+ +GL+TC TLG+
Sbjct: 61 LKKVDEVLEEARKAKAAGATRFCLVASGRGPKDREFMEYVEAMVQIVEEMGLKTCATLGL 120
Query: 146 LSFEQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGIL 205
L EQA+ L AGLDYYNHN+DTS+ FY ++ +THT++DR+ TLEN +K+G+KVC GGI
Sbjct: 121 LDPEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTHTYDDRVDTLENAKKAGLKVCSGGIF 180
Query: 206 GLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARIL 265
GLGE ++DRI + L LANL PPES+PIN L+ I G+ +NK++ + ++ I++ARI+
Sbjct: 181 GLGETVEDRIGLALALANL--PPESVPINFLVKIKGTPLADNKELSADDALKTIALARII 238
Query: 266 MPKSRLRLAAGR-AMMSDELQALCFFSGANSIFVGDTLLTAKNPSYNKDTILFNRLGL 322
MPK+ +RLA GR M + QA+CF +GANSIFVGD L T NP +KD L +LGL
Sbjct: 239 MPKAEIRLAGGREVNMRELQQAMCFMAGANSIFVGDYLTTTGNPEEDKDKKLLAKLGL 296
|
Catalyzes the last step of the biotin biosynthesis pathway. Length = 296 |
| >gnl|CDD|38111 KOG2900, KOG2900, KOG2900, Biotin synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Score = 356 bits (914), Expect = 6e-99
Identities = 159/310 (51%), Positives = 215/310 (69%), Gaps = 4/310 (1%)
Query: 19 WTSKEVFQIYNMPFNDLLFWSHTVHRKNFEPNHIQLSKLLNIKTGGCPENCGYCNQSVHN 78
WT E+ +IY+ P DL F + HRK +P +Q LL+IKTGGC E+C YC QS
Sbjct: 48 WTRSEIKEIYDTPLLDLTFAAALQHRKWHDPTKVQQCTLLSIKTGGCSEDCKYCAQSSRY 107
Query: 79 KSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERD--LSIIVDMIKGVKSLG 136
+ +KA KL+ VD+V+KEAK AK NG+TR+CMGAAWR+ K R I++MIK V+ +G
Sbjct: 108 DTGVKAEKLMKVDEVIKEAKEAKRNGSTRFCMGAAWRDMKGRKSAFKRILEMIKEVRDMG 167
Query: 137 LETCMTLGMLSFEQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSG 196
+E C+TLGM+ +QA+ L AGL YNHN+DTS +Y V TT T++DRLQT++NVR++G
Sbjct: 168 MEVCVTLGMVDQQQAKELKDAGLTAYNHNLDTSREYYSKVITTRTYDDRLQTIKNVREAG 227
Query: 197 IKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEE--NKKVDPIE 254
IKVC GGILGLGE DDRI ++ TLA + PES+PIN L+ I G+ + +KK+ E
Sbjct: 228 IKVCSGGILGLGESEDDRIGLIHTLATMPPHPESVPINRLVAIKGTPMADEKSKKLQIDE 287
Query: 255 HVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYNKDT 314
+R I+ ARI+MPK+ +RLAAGR MS+ QALCF +GANSIF G+ +LT +++D
Sbjct: 288 ILRTIATARIVMPKAIIRLAAGRYTMSESEQALCFMAGANSIFTGEKMLTTPCNGWDEDK 347
Query: 315 ILFNRLGLIP 324
+F + GL P
Sbjct: 348 AMFAKWGLQP 357
|
Length = 380 |
| >gnl|CDD|180492 PRK06256, PRK06256, biotin synthase; Validated | Back alignment and domain information |
|---|
Score = 304 bits (781), Expect = 2e-83
Identities = 117/314 (37%), Positives = 194/314 (61%), Gaps = 11/314 (3%)
Query: 20 TSKEVFQIYNMP---FNDLLFWSHTVHRKNFEPNHIQLSKLLNIKTGGCPENCGYCNQSV 76
T +E + +P +LL ++ V RK+F ++L+ ++N K+G CPE+CGYC+QS
Sbjct: 21 TKEEALALLEIPDDDLLELLAAAYEV-RKHFCGKKVKLNTIINAKSGLCPEDCGYCSQSA 79
Query: 77 HNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKS-L 135
+ + + ++++++++ AK A E GA +C+ A+ R P +++ +V+ +K +K
Sbjct: 80 GSSAPVYRYAWLDIEELIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEET 139
Query: 136 GLETCMTLGMLSFEQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKS 195
LE C LG+L+ EQA+ L +AG+D YNHN++TS ++P+V TTHT+EDR+ T E V+ +
Sbjct: 140 DLEICACLGLLTEEQAERLKEAGVDRYNHNLETSRSYFPNVVTTHTYEDRIDTCEMVKAA 199
Query: 196 GIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEH 255
GI+ C GGI+G+GE ++DR++ L L +SIPIN L PIPG+ E + ++ P+E
Sbjct: 200 GIEPCSGGIIGMGESLEDRVEHAFFLKELD--ADSIPINFLNPIPGTPLENHPELTPLEC 257
Query: 256 VRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSY-NKDT 314
++ I++ R++ P +R+A GR + LQ L GANS+ VG+ L T P+ + D
Sbjct: 258 LKTIAIFRLINPDKEIRIAGGREVNLRSLQPL-GLGGANSVIVGNYLTTVGQPATADLDM 316
Query: 315 ILFNRLGLIPDLSA 328
I LG +L A
Sbjct: 317 I--EDLGFEIELDA 328
|
Length = 336 |
| >gnl|CDD|30848 COG0502, BioB, Biotin synthase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 403 bits (1037), Expect = e-113
Identities = 168/311 (54%), Positives = 221/311 (71%), Gaps = 4/311 (1%)
Query: 19 WTSKEVFQIYNMPFND-LLFWSHTVHRKNFEPNHIQLSKLLNIKTGGCPENCGYCNQSVH 77
WT E + ++P D LLF + HR +F+ N +QLS L++IKTG CPE+C YC+QS
Sbjct: 14 WTLDEALALLDLPDEDELLFEAAQKHRLHFDGNEVQLSTLISIKTGCCPEDCAYCSQSAR 73
Query: 78 NKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKS-LG 136
K+ +KA KL+ V+++L+ AK AK GATR+CMGAA R RD+ +V+ IK VK LG
Sbjct: 74 YKTGVKARKLMEVEEILEAAKKAKAAGATRFCMGAAGRG-PGRDMEEVVEAIKAVKEELG 132
Query: 137 LETCMTLGMLSFEQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSG 196
LE C +LGML+ EQA+ L+ AG+D YNHN++TS FY ++ TT T+EDRL TLENVR++G
Sbjct: 133 LEVCASLGMLTEEQAEKLADAGVDRYNHNLETSPEFYENIITTRTYEDRLNTLENVREAG 192
Query: 197 IKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEHV 256
I+VC GGI+GLGE ++DR ++LL LANL P+S+PIN L PIPG+ E K +DP E +
Sbjct: 193 IEVCSGGIVGLGETVEDRAELLLELANLP-TPDSVPINFLNPIPGTPLENAKPLDPFEFL 251
Query: 257 RIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYNKDTIL 316
+ I+VARI+MPKS +RL+AGR M ELQAL F +GANSIFVGD LT P +KD L
Sbjct: 252 KTIAVARIIMPKSMIRLSAGRETMLPELQALAFMAGANSIFVGDKYLTTPGPDEDKDLEL 311
Query: 317 FNRLGLIPDLS 327
LGL P+L
Sbjct: 312 LKDLGLEPELL 322
|
Length = 335 |
| >gnl|CDD|181453 PRK08508, PRK08508, biotin synthase; Provisional | Back alignment and domain information |
|---|
Score = 220 bits (562), Expect = 4e-58
Identities = 109/275 (39%), Positives = 159/275 (57%), Gaps = 6/275 (2%)
Query: 50 NHIQLSKLLNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYC 109
I L + NI +G C E+C YC QS H K+ +K K +++Q+++EAK AK NGA +C
Sbjct: 2 KEIFLCAISNISSGNCKEDCKYCTQSAHYKADIKRYKRKDIEQIVQEAKMAKANGALGFC 61
Query: 110 MGAAWREPKERDLSIIVDMIKGVKS--LGLETCMTLGMLSFEQAQILSKAGLDYYNHNID 167
+ + R ++ L + + K VK GL G S EQ + L KAG+ YNHN++
Sbjct: 62 LVTSGRGLDDKKLEYVAEAAKAVKKEVPGLHLIACNGTASVEQLKELKKAGIFSYNHNLE 121
Query: 168 TSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTP 227
TS+ F+P + TTHT+E+R QT EN +++G+ +C GGI GLGE +DRI L +LA+LS
Sbjct: 122 TSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIFGLGESWEDRISFLKSLASLS-- 179
Query: 228 PESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQAL 287
P S PIN IP P + + E + I+ +A+ +P +RL +A GR ++ E Q
Sbjct: 180 PHSTPINFFIPNPALPLKAP-TLSADEALEIVRLAKEALPNARLMVAGGREVVFGERQYE 238
Query: 288 CFFSGANSIFVGDTLLTAKNPSYNKDTILFNRLGL 322
F +GAN+I +GD LT K + KD LG
Sbjct: 239 IFEAGANAIVIGD-YLTTKGEAPKKDIEKLKSLGF 272
|
Length = 279 |
| >gnl|CDD|31260 COG1060, ThiH, Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 76.9 bits (189), Expect = 7e-15
Identities = 54/255 (21%), Positives = 95/255 (37%), Gaps = 30/255 (11%)
Query: 65 CPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSI 124
C +C +C + ++ +++L+E + A + G T + E E L
Sbjct: 69 CVNDCTFCAFYRKPGDP--KAYTLSPEEILEEVREAVKRGITEVLIVGG--EHPELSLEY 124
Query: 125 IVDMIKGVKSLGLETCMT------------LGMLSFEQA-QILSKAGLDYYNHNIDTSER 171
++ + +K + + G LS+E+ + L +AGLD +E
Sbjct: 125 YEELFRTIKEEFPDLHIHALSAGEILFLAREGGLSYEEVLKRLKEAGLDS--MPGGGAEI 182
Query: 172 FYPHVTTTH-----TFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANL-- 224
V H + E+ L+ E + GI +LG E +DRID L + +L
Sbjct: 183 LSEEVRKIHCPPKKSPEEWLEIHERAHRLGIPTTATMLLGHVETREDRIDHLEHIRDLQD 242
Query: 225 --STPPESIPINLLIPIPGSKFEENKK-VDPIEHVRIISVARILMPKSRLRLAAGRAMMS 281
E IP+ P G E + ++ I++ARI + + + A
Sbjct: 243 ETGGFQEFIPLR-FRPENGPLPAEVVPEASLEQDLKAIALARIFLDNNISNIQASWLRDG 301
Query: 282 DELQALCFFSGANSI 296
L SGAN +
Sbjct: 302 VILAQAALLSGANDL 316
|
Length = 370 |
| >gnl|CDD|128968 smart00729, Elp3, Elongator protein 3, MiaB family, Radical SAM | Back alignment and domain information |
|---|
Score = 127 bits (320), Expect = 4e-30
Identities = 54/219 (24%), Positives = 94/219 (42%), Gaps = 17/219 (7%)
Query: 55 SKLLNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNA--KENGATRYCMGA 112
L I T GCP C +C+ + KL++ L + + ++ KE +G
Sbjct: 1 PLALYIITRGCPRRCTFCSFPSA-RGKLRSRYLEALVREIELLAEKGEKEILVGTVFIGG 59
Query: 113 AW-----REPKERDLSIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNID 167
E E L I +++ + + G L+ E + L +AG++ + +
Sbjct: 60 GTPTLLSPEQLEELLEAIREILGLADDVEITIETRPGTLTEELLEALKEAGVNRVSLGVQ 119
Query: 168 T-SERFYPHVTTTHTFEDRLQTLENVRKSG-IKVCCGGILGL-GEMIDDRIDMLLTLANL 224
+ S+ + HT ED L+ +E +R++G IKV I+GL GE +D + L L L
Sbjct: 120 SGSDEVLKAINRGHTVEDVLEAVEKLREAGPIKVSTDLIVGLPGETEEDFEETLKLLKEL 179
Query: 225 STPPESIPINLLIPIPGSKFEENKK----VDPIEHVRII 259
P+ + I L P PG+ + K D E + ++
Sbjct: 180 --GPDRVSIFPLSPRPGTPLAKLYKRLKPPDKEERLELL 216
|
This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases. Length = 216 |
| >gnl|CDD|100105 cd01335, Radical_SAM, Radical SAM superfamily | Back alignment and domain information |
|---|
Score = 77.8 bits (191), Expect = 4e-15
Identities = 44/200 (22%), Positives = 85/200 (42%), Gaps = 8/200 (4%)
Query: 62 TGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERD 121
T GC NCG+C+ ++ I +++L AKE G +
Sbjct: 4 TRGCNLNCGFCSNPASKGRGPESPPEI--EEILDIVLEAKERGVEVVILTGGEPLLYPEL 61
Query: 122 LSIIVDMIKGVKSLGLETCM-TLGMLSF-EQAQILSKAGLDYYNHNIDTSER--FYPHVT 177
++ + K + G E + T G L E + L + GLD ++D+ +
Sbjct: 62 AELLRRLKKELP--GFEISIETNGTLLTEELLKELKELGLDGVGVSLDSGDEEVADKIRG 119
Query: 178 TTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLI 237
+ +F++RL+ L+ +R++G+ + ++GLG+ ++ L L P+ + + L+
Sbjct: 120 SGESFKERLEALKELREAGLGLSTTLLVGLGDEDEEDDLEELELLAEFRSPDRVSLFRLL 179
Query: 238 PIPGSKFEENKKVDPIEHVR 257
P G+ E V P E +
Sbjct: 180 PEEGTPLELAAPVVPAEKLL 199
|
Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme of the biosynthesis of molybdopterin.. Length = 204 |
| >gnl|CDD|180835 PRK07094, PRK07094, biotin synthase; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 4e-08
Identities = 56/213 (26%), Positives = 107/213 (50%), Gaps = 21/213 (9%)
Query: 65 CPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCM--GAAWREPKERDL 122
C NC YC NK+ ++ +L + +++L+ AK A E G + G E+
Sbjct: 49 CRNNCLYCGLRRDNKN-IERYRL-SPEEILECAKKAYELGYRTIVLQSGEDPYYTDEK-- 104
Query: 123 SIIVDMIKGVKS-LGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDTS-----ERFYPHV 176
I D+IK +K L + ++LG S+E+ + +AG D Y +T+ + +P
Sbjct: 105 --IADIIKEIKKELDVAITLSLGERSYEEYKAWKEAGADRYLLRHETADKELYAKLHPG- 161
Query: 177 TTTHTFEDRLQTLENVRKSGIKVCCGGILGL-GEMIDDRIDMLLTLANLSTPPESIPINL 235
+FE+R+ L+++++ G +V G ++GL G+ ++D D +L L L + I I
Sbjct: 162 ---MSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDILFLKELD--LDMIGIGP 216
Query: 236 LIPIPGSKFEENKKVDPIEHVRIISVARILMPK 268
IP P + ++ K ++++++ R+L+P
Sbjct: 217 FIPHPDTPLKDEKGGSLELTLKVLALLRLLLPD 249
|
Length = 323 |
| >gnl|CDD|31235 COG1032, COG1032, Fe-S oxidoreductase [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 49.9 bits (118), Expect = 1e-06
Identities = 38/240 (15%), Positives = 86/240 (35%), Gaps = 20/240 (8%)
Query: 64 GCPENCGYCNQSVHNK------SKLKASKLINVDQVLKEAKNAKEN----GATRYCMGAA 113
GCP C +C+ + H K ++ +++ K ++ G+
Sbjct: 207 GCPRGCRFCSITKHFKYRRRRPERVVEEIKELIEEGGKRVVFFVDDIFLYGSPALNDEKR 266
Query: 114 WREPKERDLSIIVDMIKGVKSLGLETCMTLGMLSFEQ-AQILSKAGLDYYNHNIDT-SER 171
+ + + V + ++ E+ ++L +AGL I++ SE
Sbjct: 267 FELLSLELIERGLRKGCRVH--ISAPSLRADTVTDEELLKLLREAGLRRVYIGIESGSEE 324
Query: 172 FYPHVTTTHTFEDRLQTLENV-RKSGIKVCCGGILGLGEMIDDRIDMLLTLANLST---P 227
+ T E+ L+ + ++ G++V I+GL ++ + + LA P
Sbjct: 325 LLKKINKGITTEEVLEEAVKIAKEHGLRVKLYFIVGLPGETEEDVKETIELAKFIKKLGP 384
Query: 228 PESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQAL 287
+ + +P+PG+ +E K++ R L+ R + M ++
Sbjct: 385 KLYVSPSPFVPLPGTPLQEMPKLENELLKRRFE--GDLLQPWRPLESLASEEMYYLGRSR 442
|
Length = 490 |
| >gnl|CDD|132589 TIGR03550, F420_cofG, 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 8e-05
Identities = 54/233 (23%), Positives = 94/233 (40%), Gaps = 40/233 (17%)
Query: 65 CPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGAT------------RYCMGA 112
C CGYC +L+A+ L++ ++VL+ + G T RY
Sbjct: 14 CRNRCGYCT-FRRPPGELEAA-LLSPEEVLEILRKGAAAGCTEALFTFGEKPEERY--PE 69
Query: 113 AWREPKERDLSIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLDY---YNHNI--- 166
A E ++ ++ + L LE G+L ++S+ L N ++
Sbjct: 70 AREWLAEMGYDSTLEYLRELCELALEET---GLLPHTNPGVMSRDELARLKPVNASMGLM 126
Query: 167 --DTSERFYPHVTTTHTF------EDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDML 218
TSER H RL+T+E+ + I G ++G+GE ++R + L
Sbjct: 127 LETTSERLCK--GEAHYGSPGKDPAVRLETIEDAGRLKIPFTTGILIGIGETREERAESL 184
Query: 219 LTLANLSTP----PESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMP 267
L + L E I N PG+ E + + E +R ++VAR+++P
Sbjct: 185 LAIRELHERYGHIQEVIVQNFR-AKPGTPMENHPEPSLEEMLRTVAVARLILP 236
|
This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria. Length = 322 |
| >gnl|CDD|181720 PRK09240, thiH, thiamine biosynthesis protein ThiH; Reviewed | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 1e-04
Identities = 56/236 (23%), Positives = 88/236 (37%), Gaps = 62/236 (26%)
Query: 65 CPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWRE-------- 116
C +C YC S+ NK K K L + +++ +E K+ G +
Sbjct: 84 CANDCTYCGFSMSNKIKRK--TL-DEEEIEREMAAIKKLG---------FEHILLLTGEH 131
Query: 117 PKERDLSIIVDMIKGVK----SLGLETCMTLGMLSFEQAQILSKAGLDY-------YNHN 165
+ + I + + S+ +E L S E+ L + GLD YN
Sbjct: 132 EAKVGVDYIRRALPIAREYFSSVSIEV-QPL---SEEEYAELVELGLDGVTVYQETYN-- 185
Query: 166 IDTSERFYPHVTTTHT------FEDRLQTLENVRKSGI-KVCCGGILGLGEMIDDRIDML 218
Y H FE RL+T E ++GI K+ G +LGL D R D L
Sbjct: 186 ----PATYAKH---HLRGPKRDFEYRLETPERAGRAGIRKIGLGALLGLS---DWRTDAL 235
Query: 219 LTLANLS----TPPES-IPINL--LIPIPGSKFEENKKVDPIEHVRIISVARILMP 267
+T +L ++ I+ L P G E V + V++I R+ +P
Sbjct: 236 MTALHLRYLQRKYWQAEYSISFPRLRPCTG-GIEPASIVSDKQLVQLICAFRLFLP 290
|
Length = 371 |
| >gnl|CDD|180485 PRK06245, cofG, FO synthase subunit 1; Reviewed | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 1e-04
Identities = 57/237 (24%), Positives = 93/237 (39%), Gaps = 48/237 (20%)
Query: 65 CPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGAT------------RYCMGA 112
C CGYC L++ ++V + + + G T Y
Sbjct: 22 CRNRCGYCTFRRDPGQ----PSLLSPEEVKEILRRGADAGCTEALFTFGEVPDESY--ER 75
Query: 113 AWREPKERDLSIIVDMIKGVKSLGLETCMTL------GMLSFEQAQILSKA----GLDYY 162
+ E S I++ + + L LE L G+L+ E+ + L + GL
Sbjct: 76 IKEQLAEMGYSSILEYLYDLCELALE--EGLLPHTNAGILTREEMEKLKEVNASMGLMLE 133
Query: 163 NHNIDTSERFYPHVTTTH------TFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRID 216
TS R + T H E RL+T+EN K I G ++G+GE +DR +
Sbjct: 134 Q----TSPRL---LNTVHRGSPGKDPELRLETIENAGKLKIPFTTGILIGIGETWEDRAE 186
Query: 217 MLLTLANLSTP----PESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKS 269
L +A L E I I P PG E + + E +R++++AR+++P
Sbjct: 187 SLEAIAELHERYGHIQEVI-IQNFSPKPGIPMENHPEPSLEEMLRVVALARLILPPD 242
|
Length = 336 |
| >gnl|CDD|131404 TIGR02351, thiH, thiazole biosynthesis protein ThiH | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 66/254 (25%), Positives = 101/254 (39%), Gaps = 48/254 (18%)
Query: 39 SHTVHRKNFEPNHIQLSKLLNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAK 98
+ + RK F N I L L + + C C YC S+ NK K K +N +++ +E +
Sbjct: 59 AKKLTRKRFG-NTISLFTPLYL-SNYCSNKCVYCGFSMSNKIK---RKKLNEEEIEREIE 113
Query: 99 NAKENGATRYCMGAAWREPKERDLSIIVDMIKGVK----SLGLETCMTLGMLSFEQAQIL 154
K++G + K + I + IK + SL +E + L+ E+ + L
Sbjct: 114 AIKKSGFKEILL-VTGESEKAAGVEYIAEAIKLAREYFSSLAIE----VQPLNEEEYKKL 168
Query: 155 SKAGLDY-------YNHNIDTSERFYPHVTTTHT------FEDRLQTLENVRKSGI-KVC 200
+AGLD YN E+ Y H F RL T E K+G+ K+
Sbjct: 169 VEAGLDGVTVYQETYN------EKKYKKH---HLAGKKKDFRYRLNTPERAAKAGMRKIG 219
Query: 201 CGGILGLGEMIDDRIDMLLTLANL-----STPPESIPINL--LIPIPGSKFEENKKVDPI 253
G +LGL + R D T +L I I++ L P + V
Sbjct: 220 IGALLGLDDW---RTDAFFTAYHLRYLQKKYWKTEISISVPRLRPCTNG-LKPKVIVTDR 275
Query: 254 EHVRIISVARILMP 267
E V+II R+ P
Sbjct: 276 ELVQIICAYRLFDP 289
|
Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes. Length = 366 |
| >gnl|CDD|31373 COG1180, PflA, Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 38.4 bits (89), Expect = 0.003
Identities = 39/179 (21%), Positives = 67/179 (37%), Gaps = 13/179 (7%)
Query: 62 TGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWR--EPKE 119
GC C YC N + + ++ ++V E K + G + EP
Sbjct: 42 LQGCNLRCPYC----QNPEISQRGREVSGEEVSPEVLVDKA-FYSESGGGVTFSGGEPTL 96
Query: 120 RDLSIIVDMIKGVKSLGLETCM-TLGMLSFEQAQILSKAGLDYYNHNI-DTSERFYPHVT 177
+ +D+++ K GL + T G L E + L LD ++ + Y +T
Sbjct: 97 Q-AEFALDLLRAAKERGLHVALDTNGFLPPEALEELLPL-LDAVLLDLKAFDDELYRKLT 154
Query: 178 TTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLL 236
E L+ LE + G+ V L + DD ++ ++ IPI+LL
Sbjct: 155 GA-DNEPVLENLELLADLGVHVEI-RTLVIPGYNDDEEEIRELAEFIADLGPEIPIHLL 211
|
Length = 260 |
| >gnl|CDD|129109 smart00876, BATS, Biotin and Thiamin Synthesis associated domain | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 3e-28
Identities = 42/94 (44%), Positives = 56/94 (59%), Gaps = 1/94 (1%)
Query: 232 PINLLIPIPGSKFEENKK-VDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFF 290
PIN L PI G+ E+ V P E +R I+ AR+ +P + +RL+ GR + +LQALCF
Sbjct: 1 PINRLRPIEGTPLEDPPPPVSPEEFLRTIAAARLALPDAGIRLSTGREALLRDLQALCFS 60
Query: 291 SGANSIFVGDTLLTAKNPSYNKDTILFNRLGLIP 324
+GANSIF GD LT P D + +LGL P
Sbjct: 61 AGANSIFGGDKYLTTSGPRSADDVAMLEKLGLEP 94
|
Biotin synthase (BioB), , catalyses the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer PUBMED:12482614. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this entry) and form a heterodimerPUBMED:12650933. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers PUBMED:12482614, PUBMED:12650933. This domain therefore may be involved in co-factor binding or dimerisation. Length = 94 |
| >gnl|CDD|148534 pfam06968, BATS, Biotin and Thiamin Synthesis associated domain | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 5e-26
Identities = 38/93 (40%), Positives = 55/93 (59%)
Query: 232 PINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFS 291
PIN L PI G+ E+ + E ++ I+ R+L+P + +RL+ GR + +LQ L F S
Sbjct: 1 PINFLRPIEGTPLEDQPPLSDEEALKTIAAFRLLLPDAGIRLSGGREALLRDLQGLAFMS 60
Query: 292 GANSIFVGDTLLTAKNPSYNKDTILFNRLGLIP 324
GANS FVG L T+ N S ++D + LGL P
Sbjct: 61 GANSTFVGGYLTTSGNRSPDEDIAMLKDLGLEP 93
|
Biotin synthase (BioB), EC:2.8.1.6, catalyses the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this family) and form a heterodimer. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers. This domain therefore may be involved in co-factor binding or dimerization (Finn, RD personal observation). Length = 93 |
| >gnl|CDD|146602 pfam04055, Radical_SAM, Radical SAM superfamily | Back alignment and domain information |
|---|
Score = 91.1 bits (226), Expect = 4e-19
Identities = 44/168 (26%), Positives = 72/168 (42%), Gaps = 10/168 (5%)
Query: 60 IKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMG----AAWR 115
I T GC C YC + ++ +++L+EAK G +
Sbjct: 2 IITPGCNLRCTYCAFPSI--RARGKGRELSPEEILEEAKELARLGVEVVILTGGEPLLLP 59
Query: 116 EPKERDLSIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYP 174
+ E ++ + LET TL L E + L +AGLD + ++ + +
Sbjct: 60 DLVELLERLLKLEELEGIRITLETNGTL--LDEELLEELKEAGLDRVSISLQSGDDEVLK 117
Query: 175 HVTTTHTFEDRLQTLENVRKSGIKVCCGGILGL-GEMIDDRIDMLLTL 221
+ HTFE+ L+ LE +R++GI V I+GL GE +D + L L
Sbjct: 118 IINRGHTFEEVLEALELLREAGIPVVVDNIVGLPGENDEDLEETLELL 165
|
Radical SAM proteins catalyse diverse reactions, including unusual methylations, isomerisation, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Length = 165 |
| >gnl|CDD|30668 COG0320, LipA, Lipoate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 3e-06
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 14/75 (18%)
Query: 152 QILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVR--------KSGIKVCCGG 203
+I++ AG D +NHN++T R YP V T+E L LE + KSG+
Sbjct: 166 EIVADAGPDVFNHNVETVPRLYPRVRPGATYERSLSLLERAKELGPDIPTKSGL------ 219
Query: 204 ILGLGEMIDDRIDML 218
++GLGE ++ I+++
Sbjct: 220 MVGLGETDEEVIEVM 234
|
Length = 306 |
| >gnl|CDD|161907 TIGR00510, lipA, lipoate synthase | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 3e-06
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 153 ILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKS--GIKVCCGGILGLGEM 210
IL A D YNHN++T ER P V T+ L+ LE ++ + G ++GLGE
Sbjct: 161 ILLDAPPDVYNHNLETVERLTPFVRPGATYRWSLKLLERAKEYLPNLPTKSGIMVGLGET 220
Query: 211 IDDRIDMLLTLAN 223
++ L L +
Sbjct: 221 NEEIKQTLKDLRD 233
|
The family shows strong sequence conservation. Length = 302 |
| >gnl|CDD|130279 TIGR01212, TIGR01212, radical SAM protein, TIGR01212 family | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 7e-05
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 180 HTFEDRLQTLENVRKSGIKVCCGGILGL-GEMIDDRIDMLLTLANLS-TPPESIPINLLI 237
H F + ++ RK GIKVC ILGL GE DR +M+ T +S + I I+ L
Sbjct: 160 HDFACYVDAVKRARKRGIKVCSHVILGLPGE---DREEMMETAKIVSLLDVDGIKIHPLH 216
Query: 238 PIPGSKFEE 246
+ G+K +
Sbjct: 217 VVKGTKMAK 225
|
This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain. Length = 302 |
| >gnl|CDD|183830 PRK12928, PRK12928, lipoyl synthase; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 8e-05
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 149 EQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRK--SGIKVCCGGILG 206
E+ + A D +NHN++T R V ++ L L ++ I G +LG
Sbjct: 154 ERLATVLAAKPDVFNHNLETVPRLQKAVRRGADYQRSLDLLARAKELAPDIPTKSGLMLG 213
Query: 207 LGEMIDDRIDMLLTL 221
LGE D+ I+ L L
Sbjct: 214 LGETEDEVIETLRDL 228
|
Length = 290 |
| >gnl|CDD|180115 PRK05481, PRK05481, lipoyl synthase; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (97), Expect = 5e-04
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 14/69 (20%)
Query: 149 EQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVR--------KSGIKVC 200
+ + A D +NHN++T R Y V +E L+ L+ + KSG+
Sbjct: 146 DALLTVLDARPDVFNHNLETVPRLYKRVRPGADYERSLELLKRAKELHPGIPTKSGL--- 202
Query: 201 CGGILGLGE 209
++GLGE
Sbjct: 203 ---MVGLGE 208
|
Length = 289 |
| >gnl|CDD|37883 KOG2672, KOG2672, KOG2672, Lipoate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 8e-04
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 152 QILSKAGLDYYNHNIDTSERFYPHVTTTH-TFEDRLQTLENVRKSGIKVCCGG--ILGLG 208
+ ++K+GLD Y HN++T E P V + L L++ ++ + +LGLG
Sbjct: 208 EKVAKSGLDVYAHNVETVEELTPFVRDPRANYRQSLSVLKHAKEVKPGLITKTSIMLGLG 267
Query: 209 EMIDDRIDMLLTLANL 224
E D+ I TL +L
Sbjct: 268 ET-DEEI--KQTLKDL 280
|
Length = 360 |
| >gnl|CDD|31435 COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.001
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 180 HTFEDRLQTLENVRKSGIKVCCGGILGL-GEMIDDRIDMLLTLANLS-TPPESIPINLLI 237
H F + ++ +RK GIKVC I GL GE R +ML T ++ + I ++ L
Sbjct: 165 HDFACYVDAVKRLRKRGIKVCTHLINGLPGE---TRDEMLETAKIVAELGVDGIKLHPLH 221
Query: 238 PIPGSKFEE 246
+ G+ E+
Sbjct: 222 VVKGTPMEK 230
|
Length = 312 |
| >gnl|CDD|32041 COG1856, COG1856, Uncharacterized homolog of biotin synthetase [Function unknown] | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 7e-06
Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 13/148 (8%)
Query: 127 DMIKGVK-SLGLETCMTLGMLSFEQAQILSKAG-----LDYYNHNIDTSERFYPHVTTTH 180
D +K +K GL +G + + L + LD+ N D +R Y
Sbjct: 78 DELKALKERTGLLINAHVGFVDESDLEKLKEELVDVVSLDFVGDN-DVIKRVY---KLPK 133
Query: 181 TFEDRLQTLENVRKSGIKVCCGGILGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPI 239
+ ED L++L ++++GI+V +GL I + L N P+++ + +LIP
Sbjct: 134 SVEDYLRSLLLLKENGIRVVPHITIGLDFGKIHGEFKAIDILVNY--EPDALVLVVLIPT 191
Query: 240 PGSKFEENKKVDPIEHVRIISVARILMP 267
PG+K + E ++++ AR P
Sbjct: 192 PGTKMGNSPPPPVEEAIKVVKYARKKFP 219
|
Length = 275 |
Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
| Identity | Alignment graph | Length | Definition | Probability |
| Target | 328 | biotin synthase [Candidatus Liberibacter asiaticus str. | ||
| PRK06256 | 325 | biotin synthase; Validated | 100.0 | |
| COG0502 | 335 | BioB Biotin synthase and related enzymes [Coenzyme meta | 100.0 | |
| PRK08444 | 353 | hypothetical protein; Provisional | 100.0 | |
| TIGR00433 | 350 | bioB biotin synthase; InterPro: IPR002684 Biotin syntha | 100.0 | |
| PRK07094 | 323 | biotin synthase; Provisional | 100.0 | |
| PRK05927 | 350 | hypothetical protein; Provisional | 100.0 | |
| PRK07360 | 375 | FO synthase subunit 2; Reviewed | 100.0 | |
| PRK08445 | 348 | hypothetical protein; Provisional | 100.0 | |
| PRK05926 | 371 | hypothetical protein; Provisional | 100.0 | |
| PRK09234 | 846 | fbiC FO synthase; Reviewed | 100.0 | |
| TIGR03551 | 343 | F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin sy | 100.0 | |
| COG1060 | 370 | ThiH Thiamine biosynthesis enzyme ThiH and related unch | 100.0 | |
| KOG2900 | 380 | consensus | 100.0 | |
| PRK09240 | 371 | thiH thiamine biosynthesis protein ThiH; Reviewed | 100.0 | |
| TIGR02351 | 378 | thiH thiazole biosynthesis protein ThiH; InterPro: IPR0 | 100.0 | |
| PRK09613 | 471 | thiH thiamine biosynthesis protein ThiH; Reviewed | 100.0 | |
| PRK09234 | 846 | fbiC FO synthase; Reviewed | 100.0 | |
| PRK08508 | 279 | biotin synthase; Provisional | 100.0 | |
| TIGR00423 | 331 | TIGR00423 conserved hypothetical protein TIGR00423; Int | 100.0 | |
| TIGR03550 | 322 | F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin sy | 100.0 | |
| PRK06245 | 336 | cofG FO synthase subunit 1; Reviewed | 100.0 | |
| TIGR00539 | 371 | hemN_rel putative oxygen-independent coproporphyrinogen | 99.2 | |
| TIGR00538 | 462 | hemN oxygen-independent coproporphyrinogen III oxidase; | 98.85 | |
| PRK11194 | 372 | hypothetical protein; Provisional | 98.52 | |
| PRK06267 | 324 | hypothetical protein; Provisional | 100.0 | |
| TIGR01212 | 307 | TIGR01212 radical SAM protein, TIGR01212 family; InterP | 99.72 | |
| COG1242 | 312 | Predicted Fe-S oxidoreductase [General function predict | 99.53 | |
| TIGR02026 | 506 | BchE magnesium-protoporphyrin IX monomethyl ester anaer | 99.21 | |
| COG2108 | 353 | Uncharacterized conserved protein related to pyruvate f | 99.09 | |
| TIGR01211 | 573 | ELP3 histone acetyltransferase, ELP3 family; InterPro: | 98.05 | |
| PRK05481 | 289 | lipoyl synthase; Provisional | 99.83 | |
| COG0320 | 306 | LipA Lipoate synthase [Coenzyme metabolism] | 99.83 | |
| cd01335 | 204 | Radical_SAM Radical SAM superfamily. Enzymes of this fa | 99.83 | |
| smart00729 | 216 | Elp3 Elongator protein 3, MiaB family, Radical SAM. Thi | 99.82 | |
| PRK12928 | 290 | lipoyl synthase; Provisional | 99.82 | |
| TIGR03471 | 472 | HpnJ hopanoid biosynthesis associated radical SAM prote | 99.8 | |
| ) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) . This entry represents the bacterial form of MoaA (molybdenum cofactor biosynthesis protein A). The MoaA protein is a member of the wider S-adenosylmethionine(SAM)-dependent enzyme family which catalyze the formation of protein and/or substrate radicals by reductive cleavage of SAM via a [4Fe-4S] cluster. Monomeric and homodimeric forms of MoaA have been observed in vivo, and it is not clear what the physiologically relevant form of the enzyme is . The core of each monomer consists of an incomplete TIM barrel, formed by the N-terminal region of the protein, containing a [4Fe-4S] cluster. The C-terminal region of the protein, which also contains a [4Fe-4S] cluster consists of a beta-sheet covering the lateral opening of the barrel, an extended loop and three alpha helices. The N-terminal [4Fe-4S] cluster is coordinated with 3 cysteines and an exchangeable SAM molecule, while the C-terminal [4Fe-4S], also coordinated with 3 cysteines, is the binding and activation site for GTP .; GO: 0046872 metal ion binding, 0006777 Mo-molybdopterin cofactor biosynthetic process." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=TIGR02666">TIGR02666 | 346 | moaA molybdenum cofactor biosynthesis protein A; InterP | 99.73 | |
| PRK13361 | 329 | molybdenum cofactor biosynthesis protein A; Provisional | 99.7 | |
| PRK00164 | 334 | moaA molybdenum cofactor biosynthesis protein A; Review | 99.68 | |
| PRK08208 | 436 | coproporphyrinogen III oxidase; Validated | 99.62 | |
| COG2516 | 339 | Biotin synthase-related enzyme [General function predic | 99.62 | |
| PRK05904 | 353 | coproporphyrinogen III oxidase; Provisional | 99.61 | |
| PRK08599 | 377 | coproporphyrinogen III oxidase; Provisional | 99.61 | |
| PRK05799 | 374 | coproporphyrinogen III oxidase; Provisional | 99.59 | |
| COG2896 | 322 | MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme | 99.58 | |
| PRK07379 | 399 | coproporphyrinogen III oxidase; Provisional | 99.58 | |
| PRK05628 | 376 | coproporphyrinogen III oxidase; Validated | 99.57 | |
| PRK05660 | 378 | coproporphyrinogen III oxidase; Provisional | 99.57 | |
| PRK09058 | 447 | coproporphyrinogen III oxidase; Provisional | 99.57 | |
| PRK08807 | 385 | consensus | 99.56 | |
| COG1032 | 490 | Fe-S oxidoreductase [Energy production and conversion] | 99.56 | |
| PRK06582 | 390 | coproporphyrinogen III oxidase; Provisional | 99.55 | |
| PRK08949 | 378 | consensus | 99.54 | |
| PRK09057 | 381 | coproporphyrinogen III oxidase; Provisional | 99.53 | |
| PRK06294 | 374 | coproporphyrinogen III oxidase; Provisional | 99.53 | |
| PRK08446 | 351 | coproporphyrinogen III oxidase; Provisional | 99.52 | |
| PRK13347 | 453 | coproporphyrinogen III oxidase; Provisional | 99.49 | |
| TIGR00089 | 455 | TIGR00089 RNA modification enzyme, MiaB family; InterPr | 99.48 | |
| PRK08898 | 393 | coproporphyrinogen III oxidase; Provisional | 99.48 | |
| COG0621 | 437 | MiaB 2-methylthioadenine synthetase [Translation, ribos | 99.47 | |
| PRK09249 | 456 | coproporphyrinogen III oxidase; Provisional | 99.47 | |
| PRK05301 | 375 | pyrroloquinoline quinone biosynthesis protein PqqE; Pro | 99.46 | |
| KOG2672 | 360 | consensus | 99.45 | |
| COG0635 | 416 | HemN Coproporphyrinogen III oxidase and related Fe-S ox | 99.43 | |
| PRK08629 | 424 | coproporphyrinogen III oxidase; Provisional | 99.37 | |
| TIGR01574 | 456 | miaB-methiolase tRNA-i(6)A37 thiotransferase enzyme Mia | 99.28 | |
| TIGR00510 | 310 | lipA lipoic acid synthetase; InterPro: IPR003698 Lipoic | 99.25 | |
| TIGR01125 | 475 | TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR011 | 99.19 | |
| TIGR01578 | 487 | MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-t | 99.15 | |
| COG2100 | 414 | Predicted Fe-S oxidoreductase [General function predict | 99.15 | |
| TIGR01579 | 492 | MiaB-like-C MiaB-like tRNA modifying enzyme; InterPro: | 99.12 | |
| COG1243 | 515 | ELP3 Histone acetyltransferase [Transcription / Chromat | 99.02 | |
| COG0535 | 347 | Predicted Fe-S oxidoreductases [General function predic | 99.0 | |
| COG4277 | 404 | Predicted DNA-binding protein with the Helix-hairpin-he | 98.95 | |
| TIGR02109 | 363 | PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E; Inter | 98.88 | |
| PRK11145 | 246 | pflA pyruvate formate lyase-activating enzyme 1; Provis | 98.82 | |
| COG1180 | 260 | PflA Pyruvate-formate lyase-activating enzyme [Posttran | 98.77 | |
| COG0641 | 378 | AslB Arylsulfatase regulator (Fe-S oxidoreductase) [Gen | 98.71 | |
| COG0731 | 296 | Fe-S oxidoreductases [Energy production and conversion] | 98.7 | |
| TIGR02493 | 243 | PFLA pyruvate formate-lyase 1-activating enzyme; InterP | 98.68 | |
| TIGR01290 | 461 | nifB nitrogenase cofactor biosynthesis protein NifB; In | 98.62 | |
| KOG4355 | 547 | consensus | 98.52 | |
| COG1031 | 560 | Uncharacterized Fe-S oxidoreductase [Energy production | 98.49 | |
| COG1509 | 369 | KamA Lysine 2,3-aminomutase [Amino acid transport and m | 98.42 | |
| PRK01254 | 742 | hypothetical protein; Provisional | 98.36 | |
| KOG2876 | 323 | consensus | 98.27 | |
| PRK00955 | 599 | hypothetical protein; Provisional | 98.24 | |
| COG0820 | 349 | Predicted Fe-S-cluster redox enzyme [General function p | 98.11 | |
| COG1313 | 335 | PflX Uncharacterized Fe-S protein PflX, homolog of pyru | 97.98 | |
| COG1244 | 358 | Predicted Fe-S oxidoreductase [General function predict | 97.88 | |
| PRK10076 | 213 | pyruvate formate lyase II activase; Provisional | 97.79 | |
| TIGR00048 | 378 | TIGR00048 radical SAM enzyme, Cfr family; InterPro: IPR | 97.78 | |
| COG5014 | 228 | Predicted Fe-S oxidoreductase [General function predict | 97.51 | |
| PRK13762 | 321 | tRNA-modifying enzyme; Provisional | 97.24 | |
| COG1625 | 414 | Fe-S oxidoreductase, related to NifB/MoaA family [Energ | 96.49 | |
| TIGR02494 | 305 | PFLE_PFLC glycyl-radical enzyme activating protein fami | 95.82 | |
| pfam06968 | 93 | BATS Biotin and Thiamin Synthesis associated domain. Bi | 99.81 | |
| smart00876 | 94 | BATS Biotin and Thiamin Synthesis associated domain. Bi | 99.76 | |
| COG1856 | 275 | Uncharacterized homolog of biotin synthetase [Function | 99.76 | |
| KOG2492 | 552 | consensus | 98.19 | |
| PRK08207 | 497 | coproporphyrinogen III oxidase; Provisional | 99.73 | |
| TIGR02668 | 324 | moaA_archaeal probable molybdenum cofactor biosynthesis | 99.64 | |
| pfam04055 | 165 | Radical_SAM Radical SAM superfamily. Radical SAM protei | 99.57 | |
| TIGR03470 | 318 | HpnH hopanoid biosynthesis associated radical SAM prote | 99.4 | |
| PRK13758 | 370 | anaerobic sulfatase-maturase; Provisional | 98.96 | |
| PRK13745 | 412 | anaerobic sulfatase-maturase; Provisional | 98.44 | |
| TIGR02495 | 220 | NrdG2 anaerobic ribonucleoside-triphosphate reductase a | 98.21 | |
| COG1533 | 297 | SplB DNA repair photolyase [DNA replication, recombinat | 98.03 | |
| TIGR03279 | 433 | cyano_FeS_chp putative FeS-containing Cyanobacterial-sp | 96.2 | |
| COG1964 | 475 | Predicted Fe-S oxidoreductases [General function predic | 93.23 | |
| PRK08195 | 337 | 4-hydroxy-2-ketovalerate aldolase; Validated | 98.45 | |
| TIGR03217 | 333 | 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Membe | 98.42 | |
| pfam00682 | 237 | HMGL-like HMGL-like. This family contains a diverse set | 98.3 | |
| PRK05692 | 287 | hydroxymethylglutaryl-CoA lyase; Provisional | 97.85 | |
| pfam05853 | 274 | DUF849 Prokaryotic protein of unknown function (DUF849) | 97.27 | |
| PRK11858 | 378 | aksA trans-homoaconitate synthase; Reviewed | 96.19 | |
| PRK05211 | 248 | consensus | 95.51 | |
| PRK03220 | 257 | consensus | 95.25 | |
| PRK13597 | 252 | imidazole glycerol phosphate synthase subunit HisF; Pro | 95.15 | |
| PRK07028 | 429 | bifunctional hexulose-6-phosphate synthase/ribonuclease | 94.6 | |
| COG0119 | 409 | LeuA Isopropylmalate/homocitrate/citramalate synthases | 94.28 | |
| KOG3111 | 224 | consensus | 94.26 | |
| PRK04281 | 254 | consensus | 94.0 | |
| PRK02747 | 257 | consensus | 93.82 | |
| TIGR02660 | 369 | nifV_homocitr homocitrate synthase; InterPro: IPR013477 | 93.76 | |
| PRK09140 | 206 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Review | 93.65 | |
| PRK13585 | 240 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylid | 93.1 | |
| PRK05581 | 220 | ribulose-phosphate 3-epimerase; Validated | 93.05 | |
| PRK01659 | 252 | consensus | 92.62 | |
| PRK02621 | 254 | consensus | 91.64 | |
| cd00429 | 211 | RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme | 91.54 | |
| PRK12595 | 360 | bifunctional 3-deoxy-7-phosphoheptulonate synthase/chor | 91.42 | |
| PRK08745 | 223 | ribulose-phosphate 3-epimerase; Provisional | 91.36 | |
| PRK08005 | 210 | ribulose-phosphate 3-epimerase; Validated | 91.19 | |
| PTZ00170 | 224 | D-ribulose-5-phosphate 3-epimerase; Provisional | 90.47 | |
| TIGR03278 | 404 | methan_mark_10 putative methanogenesis marker protein 1 | 97.38 | |
| cd00003 | 234 | PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase doma | 95.62 | |
| PRK05265 | 240 | pyridoxine 5'-phosphate synthase; Provisional | 95.15 | |
| pfam03740 | 239 | PdxJ Pyridoxal phosphate biosynthesis protein PdxJ. Mem | 95.04 | |
| TIGR00676 | 302 | fadh2 5,10-methylenetetrahydrofolate reductase; InterPr | 94.4 | |
| TIGR01302 | 476 | IMP_dehydrog inosine-5'-monophosphate dehydrogenase; In | 94.14 | |
| pfam05913 | 357 | DUF871 Bacterial protein of unknown function (DUF871). | 92.1 | |
| PRK11613 | 282 | folP dihydropteroate synthase; Provisional | 91.21 | |
| TIGR00559 | 265 | pdxJ pyridoxal phosphate biosynthetic protein PdxJ; Int | 90.2 | |
| COG0854 | 243 | PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme | 90.08 | |
| pfam10113 | 505 | Fibrillarin_2 Fibrillarin-like archaeal protein. Member | 97.02 | |
| COG4018 | 505 | Uncharacterized protein conserved in archaea [Function | 95.72 | |
| TIGR03365 | 238 | Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesi | 96.7 | |
| COG0602 | 212 | NrdG Organic radical activating enzymes [Posttranslatio | 95.79 | |
| KOG4039 | 238 | consensus | 92.48 | |
| PRK00915 | 511 | 2-isopropylmalate synthase; Validated | 96.54 | |
| PRK09389 | 487 | (R)-citramalate synthase; Provisional | 95.7 | |
| pfam00478 | 467 | IMPDH IMP dehydrogenase / GMP reductase domain. This fa | 95.36 | |
| PRK00507 | 221 | deoxyribose-phosphate aldolase; Provisional | 94.85 | |
| cd04739 | 325 | DHOD_like Dihydroorotate dehydrogenase (DHOD) like prot | 93.63 | |
| PRK07565 | 333 | dihydroorotate dehydrogenase 2; Reviewed | 91.51 | |
| KOG2550 | 503 | consensus | 92.85 | |
| KOG2535 | 554 | consensus | 91.37 | |
| PRK12331 | 463 | oxaloacetate decarboxylase; Provisional | 90.76 | |
| PRK07807 | 479 | inositol-5-monophosphate dehydrogenase; Validated | 92.75 | |
| PTZ00314 | 499 | inosine-5'-monophosphate dehydrogenase; Provisional | 92.29 |
| >PRK06256 biotin synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=551.40 Aligned_cols=319 Identities=37% Similarity=0.681 Sum_probs=293.7 Q ss_pred HHHHHHHHHCCCC-CCCCHHHHHHHHCCCHHHH--HHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCC Q ss_conf 5732134200234-4789999999973991899--999999988862898569998645307868342321243354777 Q gi|254780485|r 4 STVVPEENPTKKP-KVWTSKEVFQIYNMPFNDL--LFWSHTVHRKNFEPNHIQLSKLLNIKTGGCPENCGYCNQSVHNKS 80 (328) Q Consensus 4 ~~~~~~~~~~~~~-e~ls~eea~~L~~~~~~el--~~~Aa~~~r~~~~g~~V~~~~~in~~TN~C~~~C~fCaf~~~~~~ 80 (328) T Consensus 3 ~~i~~~~~kvl~gg~~ls~eEal~Ll~~~d~dl~~L~~~A~~iR~~~~G~~v~l~~iin~kng~C~edC~yCaqs~~~~~ 82 (325) T PRK06256 3 DILDKLAEKVLEGGEGLTKEEALALLNLPDDDLLELLAAAYEVRKHYFGKEVKLNSIINLKSGLCPEDCGYCSQSAGSSS 82 (325) T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCC T ss_conf 79999999998089999999999998099376999999999999984899799998887618988999962989076789 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCC-CCCCEEEECCCCCHHHHHHHHCCCC Q ss_conf 564100068579999999999649838997303688874428999998876213-6883241025699999998741576 Q gi|254780485|r 81 KLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKS-LGLETCMTLGMLSFEQAQILSKAGL 159 (328) Q Consensus 81 ~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~-~~~~i~~~~g~~~~~~~~~Lk~aG~ 159 (328) T Consensus 83 ~~~~y~ll~~eeI~~~a~~a~~~G~~~~~lvtsg~~~~~~~~e~v~~~i~~Ik~~~~l~i~~slG~l~~e~~~~LkeAGv 162 (325) T PRK06256 83 PIYRYAWLDIEEIVEAAKEAIENGAGRFCIVASGRGPSGREVDQVIEAVKAIKEETDLEICACLGLLTEEQAERLKEAGV 162 (325) T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCC T ss_conf 97412789999999999999986998899986045897678999999999986228936887348899999999998699 Q ss_pred CEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEEC Q ss_conf 06975134377773205888898999999999998798557707866898999999999999740888860205411204 Q gi|254780485|r 160 DYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPI 239 (328) Q Consensus 160 ~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~ 239 (328) T Consensus 163 d~y~~nlETs~~~f~~i~~tht~~~Rl~ti~~a~~aGi~vcsG~i~GlGEt~edrve~l~~Lr~l~~--~sipin~l~P~ 240 (325) T PRK06256 163 DRYNHNLETSRSYFPNVVTTHTYEDRVDTCEMVKAAGIEPCSGGIIGMGETLEDRAEHAFFLKELDA--DSIPINFLNPI 240 (325) T ss_pred CEECCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCC--CEEECCCCEEC T ss_conf 8886664406876388689988999999999999859964664376689998999999999971999--88954670106 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCCCCHHHHHHHHHH Q ss_conf 87412445687989999999999996868721423115651656899999809988997786651588898999999998 Q gi|254780485|r 240 PGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYNKDTILFNR 319 (328) Q Consensus 240 ~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~~~~~~~~i~~ 319 (328) T Consensus 241 ~gTpl~~~~~l~~~e~lr~iAi~Rl~~P~~~Ir~agGr~~~~~~~~~~-~~~gan~~~~G~~l-Tt~g~~~~~d~~~i~~ 318 (325) T PRK06256 241 KGTPLEDLPELTPLECLKTIAIFRLINPDKEIRIAGGREIALRSLQPL-ALKGANSIFVGNYL-TTLGQPAEADLKMIED 318 (325) T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHH-HHHHCHHHEECCCC-CCCCCCHHHHHHHHHH T ss_conf 998668899989999999999999978995489707855225567999-98617351466653-7899786799999998 Q ss_pred CCCCCCC Q ss_conf 2985324 Q gi|254780485|r 320 LGLIPDL 326 (328) Q Consensus 320 ~G~~P~~ 326 (328) T Consensus 319 lg~~~~~ 325 (325) T PRK06256 319 LGFEIKL 325 (325) T ss_pred CCCCCCC T ss_conf 6994009 |
|
| >COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=512.33 Aligned_cols=311 Identities=54% Similarity=0.918 Sum_probs=299.3 Q ss_pred CCCCCCHHHHHHHHCCCHHH-HHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH Q ss_conf 34478999999997399189-99999999888628985699986453078683423212433547775641000685799 Q gi|254780485|r 15 KPKVWTSKEVFQIYNMPFND-LLFWSHTVHRKNFEPNHIQLSKLLNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQV 93 (328) Q Consensus 15 ~~e~ls~eea~~L~~~~~~e-l~~~Aa~~~r~~~~g~~V~~~~~in~~TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei 93 (328) T Consensus 10 ~~~~~~~~e~~~l~~~~~~~~~L~~aA~~~R~~~~g~~V~l~~ii~iktg~c~edC~yC~qS~~~~~~~~~~~l~~~eeI 89 (335) T COG0502 10 RGERWTLDEALALLDLPDEDELLFEAAQKHRLHFDGNEVQLSTLISIKTGCCPEDCAYCSQSARYKTGVKARKLMEVEEI 89 (335) T ss_pred HCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHH T ss_conf 04676799999997288626899999999998548885899888873348889889876001047679823312899999 Q ss_pred HHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHC-CCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCCCHHH Q ss_conf 9999999964983899730368887442899999887621-368832410256999999987415760697513437777 Q gi|254780485|r 94 LKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVK-SLGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDTSERF 172 (328) Q Consensus 94 ~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~-~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let~~~~ 172 (328) T Consensus 90 le~Ak~ak~~Ga~r~c~~aagr~-~~~~~~~i~~~v~~Vk~~~~le~c~slG~l~~eq~~~L~~aGvd~ynhNLeTs~~~ 168 (335) T COG0502 90 LEAAKKAKAAGATRFCMGAAGRG-PGRDMEEVVEAIKAVKEELGLEVCASLGMLTEEQAEKLADAGVDRYNHNLETSPEF 168 (335) T ss_pred HHHHHHHHHCCCCEEEEEEECCC-CCCCHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHCCHHHEECCCCCCHHH T ss_conf 99999999749950799873167-77448999999999998469286402587999999999971811330355569788 Q ss_pred HHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCCH Q ss_conf 32058888989999999999987985577078668989999999999997408888602054112048741244568798 Q gi|254780485|r 173 YPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDP 252 (328) Q Consensus 173 ~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~~~ 252 (328) T Consensus 169 y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eDri~~l~~L~~l~~-pdsVPIn~l~P~~GTPle~~~~~~~ 247 (335) T COG0502 169 YENIITTRTYEDRLNTLENVREAGIEVCSGGIVGLGETVEDRAELLLELANLPT-PDSVPINFLNPIPGTPLENAKPLDP 247 (335) T ss_pred HCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCC-CCEEEEEEECCCCCCCCCCCCCCCH T ss_conf 756578988889999999999809850451276189988899999999971899-8854232103799986665899998 Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCCCCHHHHHHHHHHCCCCCCCC Q ss_conf 999999999999686872142311565165689999980998899778665158889899999999829853247 Q gi|254780485|r 253 IEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYNKDTILFNRLGLIPDLS 327 (328) Q Consensus 253 ~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~~~~~~~~i~~~G~~P~~~ 327 (328) T Consensus 248 ~e~lk~IA~~Ri~~P~~~Ir~s~gr~~~~~~~q~~~~~aGansi~~g~~~ltt~~~~~e~D~~~l~~lgl~~e~~ 322 (335) T COG0502 248 FEFLKTIAVARIIMPKSMIRLSAGRETMLPELQALAFMAGANSIFVGDKYLTTPGPDEDKDLELLKDLGLEPELL 322 (335) T ss_pred HHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHCCCEEEECCEEEECCCCCCHHHHHHHHHCCCCCCCC T ss_conf 999999999999778645672588352258889999984566356524476248998036899999738872114 |
|
| >PRK08444 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=500.07 Aligned_cols=312 Identities=18% Similarity=0.220 Sum_probs=273.3 Q ss_pred HHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEEEEEEC-CCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 134200234478999999997399189999999998886289856999864530-7868342321243354777564100 Q gi|254780485|r 8 PEENPTKKPKVWTSKEVFQIYNMPFNDLLFWSHTVHRKNFEPNHIQLSKLLNIK-TGGCPENCGYCNQSVHNKSKLKASK 86 (328) Q Consensus 8 ~~~~~~~~~e~ls~eea~~L~~~~~~el~~~Aa~~~r~~~~g~~V~~~~~in~~-TN~C~~~C~fCaf~~~~~~~~~~~~ 86 (328) T Consensus 2 dIleKv~~gerls~ee~~~L~~~dl~~L~~~Ad~~R~~-~~G~~vtfv~n~~IN~TNiC~~~C~FCaF~r~~~~--~~aY 78 (353) T PRK08444 2 NLLEKLENNERLNQEEAVALYDLDLFTLGKYADRKRTK-LHGKKVYFNINRHINPTNICADVCKFCAFSAHRKN--PNPY 78 (353) T ss_pred CHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHH-HCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC--CCCE T ss_conf 48889876998999999999868999999999999998-77991699820574566445688856756168999--9876 Q ss_pred CCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEC-------------CCCCHHHHHH Q ss_conf 068579999999999649838997303688874428999998876213688324102-------------5699999998 Q gi|254780485|r 87 LINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTL-------------GMLSFEQAQI 153 (328) Q Consensus 87 ~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~-------------g~~~~~~~~~ 153 (328) T Consensus 79 ~ls~eei~~~~~ea~~~G~tev~i~GG~~P--~~~~eyY~~l~r~ik~~~P~i~i~aft~~EI~~~a~~~~~s~~evL~~ 156 (353) T PRK08444 79 TMSHEEILEIVKESVKRGIKEVHIVSAHNP--NYGYQWYLEIFKMIKEAYPNLHVKAMTAAEVDFLSRKFGKSYEEVLED 156 (353) T ss_pred ECCHHHHHHHHHHHHHCCCCEEEEECCCCC--CCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCHHHHHHH T ss_conf 669999999999999759878998147598--997588999999999858850477177899999999809999999999 Q ss_pred HHCCCCCEE-EEECCC-CHHHHHCCCCCC-CHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCE Q ss_conf 741576069-751343-777732058888-98999999999998798557707866898999999999999740888860 Q gi|254780485|r 154 LSKAGLDYY-NHNIDT-SERFYPHVTTTH-TFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPES 230 (328) Q Consensus 154 Lk~aG~~~~-~~~let-~~~~~~~~~~~~-~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~ 230 (328) T Consensus 157 Lk~AGL~slpGggAEIl~d~VR~~I~p~K~~~~~Wl~i~~~AH~lGi~ttaTmmyGhvEt~e~rv~HL~~lR~lQd~tgG 236 (353) T PRK08444 157 MLEYGVDSMPGGGAEIFDEEVRKKICKGKVSSERWLEIHKYWHKKGKQSNATMLFGHIENREHRIDHMLRLRDLQDKTGG 236 (353) T ss_pred HHHHCCCCCCCCCCHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCC T ss_conf 99819875789872003777897618998999999999999998299664146778879999999999999983655798 Q ss_pred EECCCEEE----CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCC---EEEECCEEE Q ss_conf 20541120----48741244568798999999999999686872142311565165689999980998---899778665 Q gi|254780485|r 231 IPINLLIP----IPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGAN---SIFVGDTLL 303 (328) Q Consensus 231 v~~~~~~p----~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN---~~~~g~~~~ 303 (328) T Consensus 237 F~--~FIPl~f~~~~t~l~~~~~~t~~e~Lr~~AisRl~Ldn-i~~IqasWv~~G~~~aq~aL~~GanDlggT~~eE~i~ 313 (353) T PRK08444 237 FN--AFIPLVYQRENNYLKVEKFPSSQEILKTIAISRILLDN-IPHIKAYWATLTLNLALVAQEFGANDLDGTIEKESIQ 313 (353) T ss_pred EE--EEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC-CCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCEE T ss_conf 35--89765657899857778999989999999999998638-7861544562378999999966996775555545244 Q ss_pred CCCC------CCHHHHHHHHHHCCCCCCCC Q ss_conf 1588------89899999999829853247 Q gi|254780485|r 304 TAKN------PSYNKDTILFNRLGLIPDLS 327 (328) Q Consensus 304 t~~g------~~~~~~~~~i~~~G~~P~~~ 327 (328) T Consensus 314 ~~aGa~~~~~~~~~~l~~~I~~aG~~P~eR 343 (353) T PRK08444 314 SAAGAKSAHGLSKEDFIFLIKDSGFIPVER 343 (353) T ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCEEEE T ss_conf 212589988899999999999859975521 |
|
| >TIGR00433 bioB biotin synthase; InterPro: IPR002684 Biotin synthase 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=499.67 Aligned_cols=296 Identities=50% Similarity=0.913 Sum_probs=275.0 Q ss_pred HHCCC---HHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCC----------CCCCCCCCCCHH-- Q ss_conf 97399---189999999998886289856999864530786834232124335477----------756410006857-- Q gi|254780485|r 27 IYNMP---FNDLLFWSHTVHRKNFEPNHIQLSKLLNIKTGGCPENCGYCNQSVHNK----------SKLKASKLINVD-- 91 (328) Q Consensus 27 L~~~~---~~el~~~Aa~~~r~~~~g~~V~~~~~in~~TN~C~~~C~fCaf~~~~~----------~~~~~~~~~~~E-- 91 (328) T Consensus 1 l~~~p~E~~l~Ll~~A~~~~r~~~~~~~v~Lc~i~N~KSG~C~EDC~YCsQSs~~~CniPiYPlk~~~~~~~~~~~~~De 80 (350) T TIGR00433 1 LYETPDEDLLDLLYEAFQIHRKHFNPRKVQLCTIMNIKSGGCPEDCGYCSQSSRSKCNIPIYPLKDTGLPIERLKKVDDE 80 (350) T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH T ss_conf 98887513799999999999873374802342110122185766776788555266886224566741789988767654 Q ss_pred ------------HHHHHHHHHHHCCC---------EEEEEECCCCCCCCCC------HHHHHHHHHHHCC--CCCCEEEE Q ss_conf ------------99999999996498---------3899730368887442------8999998876213--68832410 Q gi|254780485|r 92 ------------QVLKEAKNAKENGA---------TRYCMGAAWREPKERD------LSIIVDMIKGVKS--LGLETCMT 142 (328) Q Consensus 92 ------------ei~~~a~~~~~~G~---------~~~~l~~~~~~~~~~~------~~~~~e~i~~i~~--~~~~i~~~ 142 (328) T Consensus 81 Cskisssier~k~~l~eA~~a~~~G~PnrGfPlWv~rFClvasGR~~~~~~~~dref~~~v~~~~~~~~~ee~GL~~C~~ 160 (350) T TIGR00433 81 CSKISSSIEREKEILEEARAAKAAGAPNRGFPLWVTRFCLVASGRGPKDRESKDREFIEIVEAVVKIVEEEELGLKTCAT 160 (350) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHC T ss_conf 32222111111378999999997087888853035014655417888877742202889999999997520037122320 Q ss_pred CCCCCHHHHHHHHCCCCCEEEEECC-CCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHH Q ss_conf 2569999999874157606975134-377773205888898999999999998798557707866898999999999999 Q gi|254780485|r 143 LGMLSFEQAQILSKAGLDYYNHNID-TSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTL 221 (328) Q Consensus 143 ~g~~~~~~~~~Lk~aG~~~~~~~le-t~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~l 221 (328) T Consensus 161 LG~l~~eqa~~LKdAGld~YNHNl~~TS~~~y~~I~sThty~DR~~T~~~~k~aGl~~CsGGI~GlgEt~~DrI~l~~~L 240 (350) T TIGR00433 161 LGLLDPEQAKQLKDAGLDRYNHNLDETSQEYYSKIISTHTYDDRVDTVKNAKEAGLKVCSGGILGLGETWEDRIGLALAL 240 (350) T ss_pred CCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCEECCCHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHH T ss_conf 37768899998886388611167367878766873432307767999999997388724462345898889999999997 Q ss_pred HHCCCCCCEEECCCEEECCCCC----CCC--CCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHH---HHHHHC Q ss_conf 7408888602054112048741----244--5687989999999999996868721423115651656899---999809 Q gi|254780485|r 222 ANLSTPPESIPINLLIPIPGSK----FEE--NKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQA---LCFFSG 292 (328) Q Consensus 222 r~l~~~~~~v~~~~~~p~~gt~----l~~--~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~---~~L~~G 292 (328) T Consensus 241 ~~L~p~peSvPiN~L~~~~GTP~~E~L~~~~~~~L~~~~~Lk~iA~ari~mP~~~iRlagGR~~~m~e~~~kea~~~~ag 320 (350) T TIGR00433 241 ANLSPEPESVPINFLVKIEGTPAYEKLADGEVKKLSADDALKTIALARIIMPKAEIRLAGGREVNMKELQQKEAMCFMAG 320 (350) T ss_pred HCCCCCCCEECCCCEECCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCEEEECCCCCHHHHHHHHHH T ss_conf 52776787011132026888853443158886733889999999998865431100100251450476754899999984 Q ss_pred CCEEEECCEEECCCCCCHHHHHHHHHHCCC Q ss_conf 988997786651588898999999998298 Q gi|254780485|r 293 ANSIFVGDTLLTAKNPSYNKDTILFNRLGL 322 (328) Q Consensus 293 aN~~~~g~~~~t~~g~~~~~~~~~i~~~G~ 322 (328) T Consensus 321 ~Nsif~G~yLtT~g~~~eD~D~~~l~~lgL 350 (350) T TIGR00433 321 ANSIFVGDYLTTTGQPPEDEDKKLLAKLGL 350 (350) T ss_pred HHHHEECCCCCCCCCCCCHHHHHHHHHCCC T ss_conf 212304640024865886178999986179 |
8.1.6 from EC works with flavodoxin, S-adenosylmethionine, and possibly cysteine to catalyze the last step of the biotin biosynthetic pathway. The reaction consists of the introduction of a sulphur atom into dethiobiotin, thus requiring activation of C-H bonds . Biotin (vitamin H) is a prosthetic group in enzymes catalysing carboxylation and transcarboxylation reactions . Biotin synthase from Escherichia coli is a homodimer of 76 kDa, with each polypeptide chain carrying an oxygen-sensitive (4Fe-4S) cluster, probably ligated by three cysteines of a CXXXCXXC box conserved among all known BioB sequences and a fourth still not identified ligand. BioB displays a pyridoxal phosphate-dependent cysteine desulphurase activity, which allows mobilization of the sulphur atom from free cysteine . ; GO: 0004076 biotin synthase activity, 0009102 biotin biosynthetic process. |
| >PRK07094 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=476.92 Aligned_cols=300 Identities=23% Similarity=0.379 Sum_probs=264.4 Q ss_pred CCHHHHHHHHCCCHH---HHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH Q ss_conf 899999999739918---99999999988862898569998645307868342321243354777564100068579999 Q gi|254780485|r 19 WTSKEVFQIYNMPFN---DLLFWSHTVHRKNFEPNHIQLSKLLNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLK 95 (328) Q Consensus 19 ls~eea~~L~~~~~~---el~~~Aa~~~r~~~~g~~V~~~~~in~~TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~ 95 (328) T Consensus 1 Lt~eE~l~LL~~~d~~~l~~L~~~A~~iR~~~~G~~V~l~~iIn~-Sn~C~edC~yC~~~~~n~-~~~rY-~Ls~eeI~~ 77 (323) T PRK07094 1 LSRDEILELLSNDDEEELKYLFKAADEVRKKYVGDEVHLRGLIEF-SNYCRRNCLYCGLRRSNK-NIKRY-RLSPEEILE 77 (323) T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEE-CCCCCCCCCCCCCCCCCC-CCCCC-CCCHHHHHH T ss_conf 988999998615998999999999999999977996899987984-689999993478766789-97743-799999999 Q ss_pred HHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCC-CCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCCC-HHHH Q ss_conf 999999649838997303688874428999998876213-68832410256999999987415760697513437-7773 Q gi|254780485|r 96 EAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKS-LGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDTS-ERFY 173 (328) Q Consensus 96 ~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~-~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let~-~~~~ 173 (328) T Consensus 78 ~A~~a~~~G~~~~~lqsG~-~~-~~~~e~~~~ii~~Ik~~~~l~i~lSlG~l~~e~~~~Lk~AG~dry~~nlETs~~~~y 155 (323) T PRK07094 78 CAKKAYELGYGTIVLQSGE-DP-YYTDEKIADIIKEIKKELDVAITLSLGERSYEEYKAWKEAGADRYLLRHETADRELY 155 (323) T ss_pred HHHHHHHCCCCEEEEECCC-CC-CCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEECCCCCCCHHHH T ss_conf 9999998699889996489-98-866999999999986059945997578799999999998597744124565698986 Q ss_pred HCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCCH Q ss_conf 2058888989999999999987985577078668-989999999999997408888602054112048741244568798 Q gi|254780485|r 174 PHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDP 252 (328) Q Consensus 174 ~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~~~ 252 (328) T Consensus 156 ~~i~p~~t~~~Rl~~l~~~k~~G~~v~sG~iiGlpGET~edr~~~l~~LreL~~--~~v~i~~fiP~~gTPl~~~~~~~~ 233 (323) T PRK07094 156 EKLHPGMSFENRIQCLKDLKELGYEVGSGFMVGLPGQTLEDLADDILFLKELDL--DMIGIGPFIPHPDTPLADEKGGSL 233 (323) T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCC--CEECCCCCCCCCCCCCCCCCCCCH T ss_conf 775899998999999999998398104302779899999999999999983799--886772551799999889999799 Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEEC--------CEEECCC----CCC----HHHHHHH Q ss_conf 99999999999968687214231156516568999998099889977--------8665158----889----8999999 Q gi|254780485|r 253 IEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVG--------DTLLTAK----NPS----YNKDTIL 316 (328) Q Consensus 253 ~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g--------~~~~t~~----g~~----~~~~~~~ 316 (328) T Consensus 234 ~~~lr~iAl~Rli~P~a~Ipattal~~l~~~g~~~~l~aGANvvmp~~tp~~~r~~y~ly~~k~~~~~~~~~~~~~~~~~ 313 (323) T PRK07094 234 ELTLKVLALARLLLPDANIPATTALGTLNPDGREKGLKAGANVVMPNLTPTEYRKLYQLYPGKICTGEEAAECRECIEAR 313 (323) T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHHCCHHHHHHHHHCCCCEECCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH T ss_conf 99999999999978766574446532249889999987688664788994676257526799876887899999999999 Q ss_pred HHHCCCCCC Q ss_conf 998298532 Q gi|254780485|r 317 FNRLGLIPD 325 (328) Q Consensus 317 i~~~G~~P~ 325 (328) T Consensus 314 ~~~~g~~~~ 322 (323) T PRK07094 314 IESIGRTVG 322 (323) T ss_pred HHHCCCCCC T ss_conf 997286468 |
|
| >PRK05927 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=480.42 Aligned_cols=310 Identities=15% Similarity=0.164 Sum_probs=263.6 Q ss_pred CCCCCCCCHHHHHHHHCC-CHHHHHHHHHHHHHHHCCCCEEEEEEEEEEC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCH Q ss_conf 023447899999999739-9189999999998886289856999864530-78683423212433547775641000685 Q gi|254780485|r 13 TKKPKVWTSKEVFQIYNM-PFNDLLFWSHTVHRKNFEPNHIQLSKLLNIK-TGGCPENCGYCNQSVHNKSKLKASKLINV 90 (328) Q Consensus 13 ~~~~e~ls~eea~~L~~~-~~~el~~~Aa~~~r~~~~g~~V~~~~~in~~-TN~C~~~C~fCaf~~~~~~~~~~~~~~~~ 90 (328) T Consensus 1 ~~~~~Rls~~e~~~L~~~~dl~~l~~~A~~~R~~~~~g~~Vtyv~n~~iN~TNvC~~~C~FCaF~r~~~~--~~ay~ls~ 78 (350) T PRK05927 1 MNLPKRISFQEGLELFLSSPLEELQERADSLRKQRYPQNTVTYVLDANPNYTNICKIDCTFCAFYRKPRS--SDAYLLSF 78 (350) T ss_pred CCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHCCCCCCCCCCCCCC--CCCCCCCH T ss_conf 9703469999999986179999999999999997559986999620487741256576934774258999--87532799 Q ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEC-------------CCCCHHHHHHHHCC Q ss_conf 79999999999649838997303688874428999998876213688324102-------------56999999987415 Q gi|254780485|r 91 DQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTL-------------GMLSFEQAQILSKA 157 (328) Q Consensus 91 Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~-------------g~~~~~~~~~Lk~a 157 (328) T Consensus 79 eei~~~~~e~~~~G~tEv~i~GG~~P--~l~~eyy~~l~r~ik~~~P~i~ihafs~~Ei~~~a~~~g~s~~e~L~~Lk~A 156 (350) T PRK05927 79 DEFRSLMQRYVSSGVKTVLLQGGVHP--QLGIDYLEELVRITVQEFPSLHPHFFSAVEIAHAAQVSGISTEQALQRLWDA 156 (350) T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCC--CCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHC T ss_conf 99999999998669838998268899--9986999999999997488866566999999999988599999999999973 Q ss_pred CCCEE-EEECCC-CHHHHHCCCC-CCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEE-C Q ss_conf 76069-751343-7777320588-889899999999999879855770786689899999999999974088886020-5 Q gi|254780485|r 158 GLDYY-NHNIDT-SERFYPHVTT-THTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIP-I 233 (328) Q Consensus 158 G~~~~-~~~let-~~~~~~~~~~-~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~-~ 233 (328) T Consensus 157 GL~slPGgGAEIl~d~VR~~I~p~K~s~~~Wl~i~~~AH~lGi~ttaTmlyGhiEt~e~ri~HL~~lR~lQdeTgGF~~F 236 (350) T PRK05927 157 GQRTIPGGGAEILSERVRKIISPKKMGPDGWINFHKLAHRLGFRSTATMMFGHVENPEDILLHLQTLRDAQDENPGFYSF 236 (350) T ss_pred CCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCEEEE T ss_conf 76768998750168777751488888999999999999985997520246368799999999999999987650987999 Q ss_pred CCEEE-CCCCCCCCC--CCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCC---EEEECCEEECCCC Q ss_conf 41120-487412445--68798999999999999686872142311565165689999980998---8997786651588 Q gi|254780485|r 234 NLLIP-IPGSKFEEN--KKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGAN---SIFVGDTLLTAKN 307 (328) Q Consensus 234 ~~~~p-~~gt~l~~~--~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN---~~~~g~~~~t~~g 307 (328) T Consensus 237 Ipl~F~p~nt~l~~~~~~~~~~~~~Lr~~AvaRl~Ldn~-~hIqa~Wv~~G~~~aq~aL~~GanDlgGT~~eE~I~~aaG 315 (350) T PRK05927 237 IPWSYKPGNTALGRRVPQQASPELYYRILALARIFLDNF-DHIAASWFGEGKEEGAKGLHYGADDFGGTILDESVHKCTG 315 (350) T ss_pred EECCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHCCCC-CCEEECEEECCHHHHHHHHHCCCCCCCCCCEEEEEECCCC T ss_conf 946765488746542788998457599999999970698-8637240525799999999669976765530004643228 Q ss_pred C----CHHHHHHHHHHCCCCCCCC Q ss_conf 8----9899999999829853247 Q gi|254780485|r 308 P----SYNKDTILFNRLGLIPDLS 327 (328) Q Consensus 308 ~----~~~~~~~~i~~~G~~P~~~ 327 (328) T Consensus 316 ~~~~~~~~el~~~I~~aG~~P~eR 339 (350) T PRK05927 316 WDLQSSEEEICAMIRSEGFIPVER 339 (350) T ss_pred CCCCCCHHHHHHHHHHCCCCCCCC T ss_conf 998999999999999859973012 |
|
| >PRK07360 FO synthase subunit 2; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=473.26 Aligned_cols=323 Identities=16% Similarity=0.253 Sum_probs=268.7 Q ss_pred CCHHHHHHHHHHCCCCCCCCHHHHHHHHCCCH----HHHHHHHHHHHHHHCCCCEEEEEEEEEEC-CCCCCCCCCCCCCC Q ss_conf 98557321342002344789999999973991----89999999998886289856999864530-78683423212433 Q gi|254780485|r 1 MSRSTVVPEENPTKKPKVWTSKEVFQIYNMPF----NDLLFWSHTVHRKNFEPNHIQLSKLLNIK-TGGCPENCGYCNQS 75 (328) Q Consensus 1 ~~~~~~~~~~~~~~~~e~ls~eea~~L~~~~~----~el~~~Aa~~~r~~~~g~~V~~~~~in~~-TN~C~~~C~fCaf~ 75 (328) T Consensus 2 ~~~~~~~~Il~Kv~~GerLs~eeal~L~~~~d~~~l~~L~~~A~~v-R~~~~Gd~Vtfv~n~~In~TNiC~~~C~fCaF~ 80 (375) T PRK07360 2 MTDQIPEDILERAFKGKDLSKEDALELLEDTEPRNIFEILELADRL-RAEQVGDTVTYVVNRNINFTNICEGHCGFCAFR 80 (375) T ss_pred CCCCCHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHH-HHHHCCCEEEEEEEECCCHHHHHHCCCCCCCCC T ss_conf 8751299999999769999999999998469857899999999999-998669969998252665617987089827340 Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCC---CCHHHHHHHHHHHCCCCCCEEEEC--------- Q ss_conf 54777564100068579999999999649838997303688874---428999998876213688324102--------- Q gi|254780485|r 76 VHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKE---RDLSIIVDMIKGVKSLGLETCMTL--------- 143 (328) Q Consensus 76 ~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~---~~~~~~~e~i~~i~~~~~~i~~~~--------- 143 (328) T Consensus 81 r~p~~--~~ay~ls~eEi~~~~~~a~~~G~tEv~~~gG~~P~l~~~~~~~~~y~~~~~~ik~~~p~i~i~a~s~~Ei~~~ 158 (375) T PRK07360 81 RDKGD--PGAFWLDIEEILEKAAEAVKAGATEVCIQGGLHPAADLNGSSLDFYLEILKAIKAEFPGIHLHAFSPQEVQFA 158 (375) T ss_pred CCCCC--CCCEECCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHH T ss_conf 78899--7660278999999999998658808997688783445464518999999999998689855640899999998 Q ss_pred ----CCCCHHHHHHHHCCCCCEE-EEECCC-CHHHHHCCCCCC-CHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHH Q ss_conf ----5699999998741576069-751343-777732058888-989999999999987985577078668989999999 Q gi|254780485|r 144 ----GMLSFEQAQILSKAGLDYY-NHNIDT-SERFYPHVTTTH-TFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRID 216 (328) Q Consensus 144 ----g~~~~~~~~~Lk~aG~~~~-~~~let-~~~~~~~~~~~~-~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~ 216 (328) T Consensus 159 a~~~g~~~~e~l~~LkeAGl~s~pG~gaEil~~~vr~~i~P~K~~~~~wl~v~~~Ah~lGi~ttatmL~Gh~Et~eerv~ 238 (375) T PRK07360 159 AREDGLSYEEVLKALKDAGLDSMPGTAAEILDDEVRRIICPEKITTAEWIEIVKTAHKLGLPTTSTMMYGHIETPEHRID 238 (375) T ss_pred HHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHH T ss_conf 86649988999999997698758887621034556646598988999999999999982997010026189899999999 Q ss_pred HHHHHHHCCCCCCEEE-C--CCEEECCCCCCCCC----CCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHH Q ss_conf 9999974088886020-5--41120487412445----687989999999999996868721423115651656899999 Q gi|254780485|r 217 MLLTLANLSTPPESIP-I--NLLIPIPGSKFEEN----KKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCF 289 (328) Q Consensus 217 ~l~~lr~l~~~~~~v~-~--~~~~p~~gt~l~~~----~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L 289 (328) T Consensus 239 hL~~iR~lqd~tggf~efIp~~F~~-~nt~l~~~~~~~~~~~~~e~lk~~AvaRl~Ldn~i~~Iqa~Wv~~g~~~~q~aL 317 (375) T PRK07360 239 HLSILREIQKETGGITEFIPLPFVH-ENAPLYERGRVKRGAPGLEDLKLYAVSRIFLGNWIKNIQPSWVKLGLKLAQEAL 317 (375) T ss_pred HHHHHHHHHHHCCCEEEEEECCCCC-CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHH T ss_conf 9999998887449846997114358-998500015678888669899999999998338887657777544899999999 Q ss_pred HHCCC---EEEECCEEECCCC------CCHHHHHHHHHHCCCCCCCC Q ss_conf 80998---8997786651588------89899999999829853247 Q gi|254780485|r 290 FSGAN---SIFVGDTLLTAKN------PSYNKDTILFNRLGLIPDLS 327 (328) Q Consensus 290 ~~GaN---~~~~g~~~~t~~g------~~~~~~~~~i~~~G~~P~~~ 327 (328) T Consensus 318 ~~GanD~ggt~~ee~i~~~aG~~~~~~~~~~~l~~~i~~aG~~p~eR 364 (375) T PRK07360 318 NCGANDLGGTLMEEHITKMAGASGGTCMSVEELENAIKSIGRIPKQR 364 (375) T ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHC T ss_conf 66997676656667500122689988899999999999849983111 |
|
| >PRK08445 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=472.41 Aligned_cols=306 Identities=14% Similarity=0.190 Sum_probs=259.0 Q ss_pred CCCCHHHHHHHHC-CCHHHHHHHHHHHHHHHCCCCEEEEEEEEEEC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH Q ss_conf 4789999999973-99189999999998886289856999864530-786834232124335477756410006857999 Q gi|254780485|r 17 KVWTSKEVFQIYN-MPFNDLLFWSHTVHRKNFEPNHIQLSKLLNIK-TGGCPENCGYCNQSVHNKSKLKASKLINVDQVL 94 (328) Q Consensus 17 e~ls~eea~~L~~-~~~~el~~~Aa~~~r~~~~g~~V~~~~~in~~-TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~ 94 (328) T Consensus 2 eRls~~e~~~L~~~~dl~~L~~~A~~~R~~~~g~~vvtfv~nrniN~TNiC~~~C~FCaF~r~~~~--~~aY~ls~eei~ 79 (348) T PRK08445 2 KRLNKEEALDLIKNAPLKELGQMALARKQELHPEKITTFIVDRNINYTNICWVDCKFCAFYRHLKE--EDAYILSFEEID 79 (348) T ss_pred CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHCCCCCCCCCCCCCC--CCCCCCCHHHHH T ss_conf 879999999986489999999999999999759935999701687552686548977757479999--876227999999 Q ss_pred HHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECC-------------CCCHHHHHHHHCCCCCE Q ss_conf 99999996498389973036888744289999988762136883241025-------------69999999874157606 Q gi|254780485|r 95 KEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTLG-------------MLSFEQAQILSKAGLDY 161 (328) Q Consensus 95 ~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g-------------~~~~~~~~~Lk~aG~~~ 161 (328) T Consensus 80 ~~~~~a~~~g~tEv~i~GG~~P--~l~~~yY~~l~r~ik~~~P~i~ihaft~~EI~~~a~~~~~s~~EvL~~Lk~AGL~s 157 (348) T PRK08445 80 QKIEELLAIGGTQILFQGGVHP--KLKIEWYENLVSHIAQKYPTITIHGFSAVEIDYIAKISKISLKEVLERLQAKGLSS 157 (348) T ss_pred HHHHHHHHCCCEEEEEECCCCC--CCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCC T ss_conf 9999998649818998279899--99777999999999975775424279999999999981989999999999819887 Q ss_pred E-EEECCC-CHHHHHCCCCC-CCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECC-CEE Q ss_conf 9-751343-77773205888-8989999999999987985577078668989999999999997408888602054-112 Q gi|254780485|r 162 Y-NHNIDT-SERFYPHVTTT-HTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPIN-LLI 237 (328) Q Consensus 162 ~-~~~let-~~~~~~~~~~~-~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~-~~~ 237 (328) T Consensus 158 lPGggAEIl~d~VR~~I~p~K~s~~~Wlei~~~AH~lGi~ttaTMlyGhiEt~e~rv~HL~~lR~lQdeTgGF~~FIpl~ 237 (348) T PRK08445 158 IPGAGAEILSDRVRDIIAPKKLSSDRWLEVHRQAHKIGMKSTATMMFGTVENDEEIIEHWEHIRDLQDETGGFRAFILWS 237 (348) T ss_pred CCCCCHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECC T ss_conf 88866263488999874888899999999999999869964121362677999999999999999998619978998543 Q ss_pred -ECCCCCCCC----CCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCC---EEEECCEEECCCCC- Q ss_conf -048741244----568798999999999999686872142311565165689999980998---89977866515888- Q gi|254780485|r 238 -PIPGSKFEE----NKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGAN---SIFVGDTLLTAKNP- 308 (328) Q Consensus 238 -p~~gt~l~~----~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN---~~~~g~~~~t~~g~- 308 (328) T Consensus 238 F~p~nt~l~~~~~~~~~~~~~e~Lk~~AvsRL~Ldn-i~~Iqa~Wv~~G~~~aq~aL~~GanD~gGT~~eE~I~~aAGa~ 316 (348) T PRK08445 238 FQPDNTPLKEEHPEIKKQSSNRYLRLLAVSRLFLDN-FKNIQSSWVTQGSYIGQLALLFGANDLGSTMMEENVVKAAGAS 316 (348) T ss_pred CCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHCC-CCCEEEEEEECCHHHHHHHHHCCCCCCCCCCCCCEEHHHCCCC T ss_conf 106997020037877899879999999999998648-8760621020578999999956997776551010112510899 Q ss_pred ---CHHHHHHHHHHCCCCCCCC Q ss_conf ---9899999999829853247 Q gi|254780485|r 309 ---SYNKDTILFNRLGLIPDLS 327 (328) Q Consensus 309 ---~~~~~~~~i~~~G~~P~~~ 327 (328) T Consensus 317 ~~~~~~~l~~lI~~aG~~P~eR 338 (348) T PRK08445 317 FRMNQAEMIELIKDIGEVPAKR 338 (348) T ss_pred CCCCHHHHHHHHHHCCCCEEEE T ss_conf 8899999999999859986320 |
|
| >PRK05926 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=469.91 Aligned_cols=317 Identities=16% Similarity=0.168 Sum_probs=262.4 Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHHH---C-CCHHHHHHHHHHHHHHHCCCCEEEEEEEEEEC-CCCCCCCCCCCCCCCCC Q ss_conf 5732134200234478999999997---3-99189999999998886289856999864530-78683423212433547 Q gi|254780485|r 4 STVVPEENPTKKPKVWTSKEVFQIY---N-MPFNDLLFWSHTVHRKNFEPNHIQLSKLLNIK-TGGCPENCGYCNQSVHN 78 (328) Q Consensus 4 ~~~~~~~~~~~~~e~ls~eea~~L~---~-~~~~el~~~Aa~~~r~~~~g~~V~~~~~in~~-TN~C~~~C~fCaf~~~~ 78 (328) T Consensus 14 ~~l~~IleKv~~G~RLs~~dg~~L~~l~~~~dl~~lg~~Ad~~R~~-~~Gd~Vtfv~nr~INyTNvC~~~C~FCaF~r~~ 92 (371) T PRK05926 14 SWLKTLFDKYLSGARLSEEDALQLLLLTDKEDQRALWSFADQVRKN-RVGDTVYYSSTLYLYPTNFCDFNCTFCSFYAKP 92 (371) T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEEECCCCCCHHHHCCCCCCCCCCCC T ss_conf 6899999999779999999999998348752599999999999997-569978996245865211342679247763689 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEC-------------CC Q ss_conf 77564100068579999999999649838997303688874428999998876213688324102-------------56 Q gi|254780485|r 79 KSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTL-------------GM 145 (328) Q Consensus 79 ~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~-------------g~ 145 (328) T Consensus 93 ~--~~~aY~ls~eei~~~v~e-~~~g~tEv~i~GG~h--P~l~~~yY~~l~~~ik~~~P~v~ihaft~~EI~~~a~~~~~ 167 (371) T PRK05926 93 G--DPKGWFYTPDQLIQSIQE-IKSPITETHIVAGCF--PSCNLAYYEELFSKIKENFPDIHIKALTAIEYAYLSKLDNL 167 (371) T ss_pred C--CCCCCCCCHHHHHHHHHH-HHCCCCEEEEECCCC--CCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCC T ss_conf 9--976523899999999999-875996899717889--89986999999999997589874144889999999998099 Q ss_pred CCHHHHHHHHCCCCCEE-EEECCC-CHHHHHCCCC-CCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHH Q ss_conf 99999998741576069-751343-7777320588-88989999999999987985577078668989999999999997 Q gi|254780485|r 146 LSFEQAQILSKAGLDYY-NHNIDT-SERFYPHVTT-THTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLA 222 (328) Q Consensus 146 ~~~~~~~~Lk~aG~~~~-~~~let-~~~~~~~~~~-~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr 222 (328) T Consensus 168 s~~EvL~~Lk~AGL~SlPGgGAEIl~d~VR~~I~p~K~~~~~Wlei~~~AH~lGi~t~ATMmyGHiEt~~~rv~HL~~lR 247 (371) T PRK05926 168 PVREVLQTLKIAGLDSIPGGGAEILVDEIRETLAPGRLSSQDFLEIHKTAHSLGIPSNATMLCYHRETPEDIVTHMSKLR 247 (371) T ss_pred CHHHHHHHHHHHCCCCCCCCCHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHH T ss_conf 99999999998387778887324347789997588989899999999999986997520465246699999999999999 Q ss_pred HCCCCCCEEE-CCCEE-ECCCCCCCCC----CCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCC-- Q ss_conf 4088886020-54112-0487412445----68798999999999999686872142311565165689999980998-- Q gi|254780485|r 223 NLSTPPESIP-INLLI-PIPGSKFEEN----KKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGAN-- 294 (328) Q Consensus 223 ~l~~~~~~v~-~~~~~-p~~gt~l~~~----~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN-- 294 (328) T Consensus 248 ~lQdeTgGF~~FIpl~F~p~nt~l~~~~~~~~~~~~~~~lk~iAvsRL~Ldn-i~hIqasWv~~G~~~aq~aL~~GAnDl 326 (371) T PRK05926 248 DLQDETLGFKNFILLKFASENNALGKRLRKMGQRHSIPPASIIAVARLFLDN-FSNIKALWNYLGIEVALHLLSCGANDL 326 (371) T ss_pred HHHHHCCCCEEEEECCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHCCC-CCCEEEEHHHCCHHHHHHHHHCCCCCC T ss_conf 9887529942997244247788220202688887740678999999997069-876785000025999999995699767 Q ss_pred -EEEECCEEECCCC------CCHHHHHHHHHHCCCCCCCC Q ss_conf -8997786651588------89899999999829853247 Q gi|254780485|r 295 -SIFVGDTLLTAKN------PSYNKDTILFNRLGLIPDLS 327 (328) Q Consensus 295 -~~~~g~~~~t~~g------~~~~~~~~~i~~~G~~P~~~ 327 (328) T Consensus 327 gGT~~eE~I~~aAGa~~~~~~~~~el~~lI~~aGr~P~~R 366 (371) T PRK05926 327 SSTHMGEKVFQMASSKEPIKMDIEGMAALITQQGRIPCLT 366 (371) T ss_pred CCCCCCCEEEHHHCCCCCCCCCHHHHHHHHHHCCCCCCCC T ss_conf 6553133464310279988789999999999849955605 |
|
| >PRK09234 fbiC FO synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=457.89 Aligned_cols=315 Identities=15% Similarity=0.156 Sum_probs=256.4 Q ss_pred HHHHCCCCCCCCHHHHHHHHCCCHH--HHHHHHHHHHHHHCCCCEEEEEEEEEEC-CCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 3420023447899999999739918--9999999998886289856999864530-786834232124335477756410 Q gi|254780485|r 9 EENPTKKPKVWTSKEVFQIYNMPFN--DLLFWSHTVHRKNFEPNHIQLSKLLNIK-TGGCPENCGYCNQSVHNKSKLKAS 85 (328) Q Consensus 9 ~~~~~~~~e~ls~eea~~L~~~~~~--el~~~Aa~~~r~~~~g~~V~~~~~in~~-TN~C~~~C~fCaf~~~~~~~~~~~ 85 (328) T Consensus 481 l~~~~~~~~~L~e~ei~~Lf~Arg~d~~~v~~~AD~lR~~~~GD~VTyVvNRNINyTNVC~~~C~FCAF~r~~~~--~~a 558 (846) T PRK09234 481 LRAAERDPAGLTDDEALALFTADGPALEAVCALADELRRDVVGDDVTYVVNRNINFTNICYTGCRFCAFAQRKGD--ADA 558 (846) T ss_pred HHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHCCCCCCCCCCCCCC--CCC T ss_conf 999750766689899999985678669999999999999871884799840676388775517973514478899--876 Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEC-------------CCCCHHHHH Q ss_conf 0068579999999999649838997303688874428999998876213688324102-------------569999999 Q gi|254780485|r 86 KLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTL-------------GMLSFEQAQ 152 (328) Q Consensus 86 ~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~-------------g~~~~~~~~ 152 (328) T Consensus 559 Y~ls~eeI~~r~~EA~~~GaTEV~iqGGih--P~l~~~~Y~di~r~iK~~~P~ihihAFSp~EI~~~A~~~g~s~~E~L~ 636 (846) T PRK09234 559 YSLSLDEVADRAWEAWVAGATEVCMQGGID--PELPGTGYADLVRAVKARVPSMHVHAFSPMEIANGATRSGLSIREWLT 636 (846) T ss_pred EECCHHHHHHHHHHHHHCCCEEEEECCCCC--CCCCHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHCCCCHHHHHH T ss_conf 118999999999999976987998347879--899878999999999986898704508999999999982999999999 Q ss_pred HHHCCCCCEE-EEECCC-CHHHHHCCCC-CCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCC Q ss_conf 8741576069-751343-7777320588-889899999999999879855770786689899999999999974088886 Q gi|254780485|r 153 ILSKAGLDYY-NHNIDT-SERFYPHVTT-THTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPE 229 (328) Q Consensus 153 ~Lk~aG~~~~-~~~let-~~~~~~~~~~-~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~ 229 (328) T Consensus 637 ~LkeAGL~SlPGggAEIL~d~VR~~Icp~K~~~~~Wlev~~~AH~lGl~TtATMmyGHvEt~e~rv~HL~~lR~lQdeTG 716 (846) T PRK09234 637 ALREAGLDTIPGTAAEILDDEVRWVLTKGKLPTAEWIEVVTTAHEVGLRSSSTMMYGHVDTPRHWVAHLRVLRDIQDRTG 716 (846) T ss_pred HHHHCCCCCCCCCCCHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHC T ss_conf 99980977799974132587999976888888999999999999859975212435677999999999999999998759 Q ss_pred EEECC-CEE-ECCCCCCC----CCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCC---EEEECC Q ss_conf 02054-112-04874124----4568798999999999999686872142311565165689999980998---899778 Q gi|254780485|r 230 SIPIN-LLI-PIPGSKFE----ENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGAN---SIFVGD 300 (328) Q Consensus 230 ~v~~~-~~~-p~~gt~l~----~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN---~~~~g~ 300 (328) T Consensus 717 GFteFIPL~F~~~~tpl~~~g~~r~gpT~~e~l~~~AvsRL~L~dnI~nIQasWVklG~~~aq~aL~~GaNDlGGTlmeE 796 (846) T PRK09234 717 GFTEFVPLPFVHQSAPLYLAGAARPGPTHRDNRAVHALARILLHGRIDNIQTSWVKLGVEGTRVMLRGGANDLGGTLMEE 796 (846) T ss_pred CEEEEEECCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEECCCHHCCHHHHHHHHHCCCCCCCCCCEEE T ss_conf 95599746756788803322688789988999999999999722688672615001679999999965997775561111 Q ss_pred EEECCCC------CCHHHHHHHHHHCCCCCCCC Q ss_conf 6651588------89899999999829853247 Q gi|254780485|r 301 TLLTAKN------PSYNKDTILFNRLGLIPDLS 327 (328) Q Consensus 301 ~~~t~~g------~~~~~~~~~i~~~G~~P~~~ 327 (328) T Consensus 797 ~I~~aAGa~~g~~~t~~el~~lI~~aGr~P~qR 829 (846) T PRK09234 797 TISRMAGSEHGSAKTVAELEAIAEGAGRPARQR 829 (846) T ss_pred EEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCC T ss_conf 331112689887799999999999859983025 |
|
| >TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=453.76 Aligned_cols=303 Identities=17% Similarity=0.273 Sum_probs=255.3 Q ss_pred CCHHHHHHHHCC--CHHHHHHHHHHHHHHHCCCCEEEEEEEEEEC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH Q ss_conf 899999999739--9189999999998886289856999864530-7868342321243354777564100068579999 Q gi|254780485|r 19 WTSKEVFQIYNM--PFNDLLFWSHTVHRKNFEPNHIQLSKLLNIK-TGGCPENCGYCNQSVHNKSKLKASKLINVDQVLK 95 (328) Q Consensus 19 ls~eea~~L~~~--~~~el~~~Aa~~~r~~~~g~~V~~~~~in~~-TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~ 95 (328) T Consensus 1 ls~eeal~L~~~~~dl~~L~~~A~~vR~-~~~G~~Vtf~~n~~In~TNiC~~~C~fCaF~r~p~-~-~~ay~lt~eei~~ 77 (343) T TIGR03551 1 ITKEEALELFEARGNLFELFRLADELRR-DIVGDTVTYVVNRNINFTNVCYGGCGFCAFRKRKG-D-ADAYLLSLEEIAE 77 (343) T ss_pred CCHHHHHHHHHCCCCHHHHHHHHHHHHH-HHCCCEEEEECCCCCCHHHHHHCCCCCCCCCCCCC-C-CCCCCCCHHHHHH T ss_conf 9889999997159999999999999999-87799489965006255268747897677866899-9-8660079999999 Q ss_pred HHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEE-------------CCCCCHHHHHHHHCCCCCEE Q ss_conf 99999964983899730368887442899999887621368832410-------------25699999998741576069 Q gi|254780485|r 96 EAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMT-------------LGMLSFEQAQILSKAGLDYY 162 (328) Q Consensus 96 ~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~-------------~g~~~~~~~~~Lk~aG~~~~ 162 (328) T Consensus 78 ~~~~a~~~G~~Ei~~~gG~~--Pel~~~~y~e~~r~ik~~~p~~~i~a~s~~Ei~~~a~~~g~~~~e~l~~Lk~AGl~s~ 155 (343) T TIGR03551 78 RAAEAWKAGATEVCIQGGIH--PDLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLKEAGLDSM 155 (343) T ss_pred HHHHHHHCCCCEEEEECCCC--CCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCC T ss_conf 99999976996899825868--7888889999999998748830102278999999998659999999999997587767 Q ss_pred E-EECCC-CHHHHHCCCCC-CCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEE-C--CCE Q ss_conf 7-51343-77773205888-89899999999999879855770786689899999999999974088886020-5--411 Q gi|254780485|r 163 N-HNIDT-SERFYPHVTTT-HTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIP-I--NLL 236 (328) Q Consensus 163 ~-~~let-~~~~~~~~~~~-~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~-~--~~~ 236 (328) T Consensus 156 pg~~aEil~~~vr~~i~P~K~~~~~wl~~~~~Ah~lGi~ttatml~G~gEt~eerv~hL~~lR~lqd~tggf~~fIp~~f 235 (343) T TIGR03551 156 PGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTATIMYGHVETPEHWVDHLLILREIQEETGGFTEFVPLPF 235 (343) T ss_pred CCCCHHHCCHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCC T ss_conf 88651321401241469698999999999999998599720223427889999999999999986201388269981365 Q ss_pred EECCCCCCCC----CCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCC---EEEECCEEECCCC-- Q ss_conf 2048741244----568798999999999999686872142311565165689999980998---8997786651588-- Q gi|254780485|r 237 IPIPGSKFEE----NKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGAN---SIFVGDTLLTAKN-- 307 (328) Q Consensus 237 ~p~~gt~l~~----~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN---~~~~g~~~~t~~g-- 307 (328) T Consensus 236 ~-p~~t~l~~~~~~~~~~~~~e~l~~iAvaRl~l~~~i~~Iqa~w~~lg~~~~q~~L~~GanD~gGt~~~e~i~~~ag~~ 314 (343) T TIGR03551 236 V-HYNAPLYLKGMARPGPTGREDLKVHAIARILLHGLIDNIQASWVKLGKKLAQVALRCGANDLGGTLMEESISRAAGAS 314 (343) T ss_pred C-CCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCC T ss_conf 6-678804441566789857999999999999704776542226625598999999957984676666777563621579 Q ss_pred ----CCHHHHHHHHHHCCCCCCCC Q ss_conf ----89899999999829853247 Q gi|254780485|r 308 ----PSYNKDTILFNRLGLIPDLS 327 (328) Q Consensus 308 ----~~~~~~~~~i~~~G~~P~~~ 327 (328) T Consensus 315 ~~~~~~~~~l~~~i~~aG~~p~eR 338 (343) T TIGR03551 315 HGEYLSPEELEAIIEDAGRIPKQR 338 (343) T ss_pred CCCCCCHHHHHHHHHHCCCCCCCC T ss_conf 988899999999999859980125 |
This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases. |
| >COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=419.07 Aligned_cols=321 Identities=19% Similarity=0.200 Sum_probs=267.4 Q ss_pred CHHHHHHHHHHCCCCCCCCHHHHHHHHCCC-HHHHHHHHHHHHHHHCCCCEEEEEEEEEEC-CCCCCCCCCCCCCCCCCC Q ss_conf 855732134200234478999999997399-189999999998886289856999864530-786834232124335477 Q gi|254780485|r 2 SRSTVVPEENPTKKPKVWTSKEVFQIYNMP-FNDLLFWSHTVHRKNFEPNHIQLSKLLNIK-TGGCPENCGYCNQSVHNK 79 (328) Q Consensus 2 ~~~~~~~~~~~~~~~e~ls~eea~~L~~~~-~~el~~~Aa~~~r~~~~g~~V~~~~~in~~-TN~C~~~C~fCaf~~~~~ 79 (328) T Consensus 5 ~~~-~~~~~e~a~~~~~l~~~d~~~Ll~~~~~~~l~~~A~~~r~~~~~~~~vtyv~n~~in~TN~C~~~C~fCaF~~~~~ 83 (370) T COG1060 5 ARD-VDEIVEKALNGERLTREDALALLSPADLEELEELADKARRRKRVGDGVTYVVNRNINYTNICVNDCTFCAFYRKPG 83 (370) T ss_pred HHH-HHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHCCCCCCCCCCCCCC T ss_conf 667-8999998752577898999988545868999999999887423688579997525785323317997262345788 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEC-------------CCC Q ss_conf 7564100068579999999999649838997303688874428999998876213688324102-------------569 Q gi|254780485|r 80 SKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTL-------------GML 146 (328) Q Consensus 80 ~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~-------------g~~ 146 (328) T Consensus 84 ~--~~~y~Ls~eeI~~~~~~~~~~G~~Evli~gG~~p--~~~~~y~~~~~~~ik~~~p~~~i~a~s~~ei~~~~~~~~~s 159 (370) T COG1060 84 D--PKAYTLSPEEILEEVREAVKRGITEVLIVGGEHP--ELSLEYYEELFRTIKEEFPDLHIHALSAGEILFLAREGGLS 159 (370) T ss_pred C--CCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCC--CCCHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHCCCCC T ss_conf 8--6553169999999999998759869998057687--74367999999999885730343016788867987436888 Q ss_pred CHHHHHHHHCCCCCEEEEECCC-C-HHHHHC-CCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHH Q ss_conf 9999998741576069751343-7-777320-588889899999999999879855770786689899999999999974 Q gi|254780485|r 147 SFEQAQILSKAGLDYYNHNIDT-S-ERFYPH-VTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLAN 223 (328) Q Consensus 147 ~~~~~~~Lk~aG~~~~~~~let-~-~~~~~~-~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~ 223 (328) T Consensus 160 ~~E~l~~Lk~aGldsmpg~~aeil~e~vr~~~~p~K~~~~~wle~~~~Ah~lGI~~tatml~Gh~E~~ed~~~hl~~ir~ 239 (370) T COG1060 160 YEEVLKRLKEAGLDSMPGGGAEILSEEVRKIHCPPKKSPEEWLEIHERAHRLGIPTTATMLLGHVETREDRIDHLEHIRD 239 (370) T ss_pred HHHHHHHHHHCCCCCCCCCCEEECHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHH T ss_conf 99999999976987674754114167799863798899999999999999769984203478732888999999999999 Q ss_pred CCCCCCE---EECCCEEECCCC-CCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCC---EE Q ss_conf 0888860---205411204874-1244568798999999999999686872142311565165689999980998---89 Q gi|254780485|r 224 LSTPPES---IPINLLIPIPGS-KFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGAN---SI 296 (328) Q Consensus 224 l~~~~~~---v~~~~~~p~~gt-~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN---~~ 296 (328) T Consensus 240 lQ~~~gg~~~fI~~~f~p~~~~~~~~~~~~~~~~~~l~~iAiaRi~l~~~i~~~~a~w~~~g~~~~~~~l~~GanD~ggt 319 (370) T COG1060 240 LQDETGGFQEFIPLRFRPENGPLPAEVVPEASLEQDLKAIALARIFLDNNISNIQASWLRDGVILAQAALLSGANDLGGT 319 (370) T ss_pred HHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC T ss_conf 99985895799805545788876666789899899999999999970676542417441036699999998286167677 Q ss_pred EECCEEECCCC------CCHHHHHHHHHHCCCCCCCC Q ss_conf 97786651588------89899999999829853247 Q gi|254780485|r 297 FVGDTLLTAKN------PSYNKDTILFNRLGLIPDLS 327 (328) Q Consensus 297 ~~g~~~~t~~g------~~~~~~~~~i~~~G~~P~~~ 327 (328) T Consensus 320 ~~~E~v~~~a~~~~~~~~~~eel~~~i~~aG~~p~~R 356 (370) T COG1060 320 GYEEKVNPAAGAFSGDWRSVEELAALIKEAGRIPVER 356 (370) T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEE T ss_conf 7553436555555678999999999999849970221 |
|
| >KOG2900 consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=416.84 Aligned_cols=310 Identities=51% Similarity=0.874 Sum_probs=298.3 Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH Q ss_conf 78999999997399189999999998886289856999864530786834232124335477756410006857999999 Q gi|254780485|r 18 VWTSKEVFQIYNMPFNDLLFWSHTVHRKNFEPNHIQLSKLLNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEA 97 (328) Q Consensus 18 ~ls~eea~~L~~~~~~el~~~Aa~~~r~~~~g~~V~~~~~in~~TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a 97 (328) T Consensus 47 ~Wtr~eik~iYdtPLldL~f~aa~~HRk~Hdp~kVQqCTLlsIKtGGCsEDCkYCaQSSRy~TGvKA~klmk~DeVi~~A 126 (380) T KOG2900 47 SWTRSEIKEIYDTPLLDLTFAAALQHRKWHDPTKVQQCTLLSIKTGGCSEDCKYCAQSSRYDTGVKAEKLMKVDEVIKEA 126 (380) T ss_pred CCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHH T ss_conf 44499999873455899999999877630782130145788750588651221101003465440278774099999999 Q ss_pred HHHHHCCCEEEEEECCCCCCCC--CCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCCCHHHHHC Q ss_conf 9999649838997303688874--42899999887621368832410256999999987415760697513437777320 Q gi|254780485|r 98 KNAKENGATRYCMGAAWREPKE--RDLSIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDTSERFYPH 175 (328) Q Consensus 98 ~~~~~~G~~~~~l~~~~~~~~~--~~~~~~~e~i~~i~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let~~~~~~~ 175 (328) T Consensus 127 k~AK~~GSTRFCmGaAWRD~~GRk~~fk~IlE~ikevr~MgmEvCvTLGMv~~qQAkeLKdAGLTAYNHNlDTSREyYsk 206 (380) T KOG2900 127 KEAKRNGSTRFCMGAAWRDMKGRKSAFKRILEMIKEVRDMGMEVCVTLGMVDQQQAKELKDAGLTAYNHNLDTSREYYSK 206 (380) T ss_pred HHHHHCCCCEEECCHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCEECCCCCCCHHHHHCC T ss_conf 99886388614311565531141458999999999987288100443144138889988854643003676424666400 Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCC--CCCCCHH Q ss_conf 58888989999999999987985577078668989999999999997408888602054112048741244--5687989 Q gi|254780485|r 176 VTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEE--NKKVDPI 253 (328) Q Consensus 176 ~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~--~~~~~~~ 253 (328) T Consensus 207 vItTRtYDdRL~Ti~nvr~aGikvCsGGIlGLGE~e~DriGlihtLatmp~HPESvPiN~LvaikGTP~~d~~~k~l~i~ 286 (380) T KOG2900 207 VITTRTYDDRLQTIKNVREAGIKVCSGGILGLGESEDDRIGLIHTLATMPPHPESVPINRLVAIKGTPMADEKSKKLQID 286 (380) T ss_pred CCEECCHHHHHHHHHHHHHHCCEECCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEECCCCCCCHHHCCCCCHH T ss_conf 12302267788888889872633314653204665556034443101489997666511477438864203213666388 Q ss_pred HHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCCCCHHHHHHHHHHCCCCCCCC Q ss_conf 99999999999686872142311565165689999980998899778665158889899999999829853247 Q gi|254780485|r 254 EHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYNKDTILFNRLGLIPDLS 327 (328) Q Consensus 254 e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~~~~~~~~i~~~G~~P~~~ 327 (328) T Consensus 287 e~lR~IaTARIvMPKaiiRlaAGR~t~sesEQalcFmAGaNsiFTGeKmLTTp~n~wD~D~~mf~~wGL~pm~~ 360 (380) T KOG2900 287 EILRTIATARIVMPKAIIRLAAGRYTMSESEQALCFMAGANSIFTGEKMLTTPCNGWDEDKAMFAKWGLQPMEA 360 (380) T ss_pred HHHHHHHHHHEECHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCEECHHHHCCCCCCCCHHHHHHHHCCCCCCCC T ss_conf 99998756331153889988515550031588899980775112041343477788444789999808876764 |
|
| >PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=351.06 Aligned_cols=309 Identities=20% Similarity=0.286 Sum_probs=264.8 Q ss_pred HHHHCCCCCCCCHHHHHHHHCCC---HHHHHH-HHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 34200234478999999997399---189999-99999888628985699986453078683423212433547775641 Q gi|254780485|r 9 EENPTKKPKVWTSKEVFQIYNMP---FNDLLF-WSHTVHRKNFEPNHIQLSKLLNIKTGGCPENCGYCNQSVHNKSKLKA 84 (328) Q Consensus 9 ~~~~~~~~e~ls~eea~~L~~~~---~~el~~-~Aa~~~r~~~~g~~V~~~~~in~~TN~C~~~C~fCaf~~~~~~~~~~ 84 (328) T Consensus 26 dV~~aL~k~~l~~~d~~~LLsp~a~~~lE~ma~~A~~l-t~~~fG~~I~LfaPLYl-SN~C~N~C~YCGf~~~N~--i~R 101 (371) T PRK09240 26 DVERALNKDKLDLEDLMALLSPAAEPYLEEMAQRAQAL-TRQRFGNTISLYTPLYL-SNLCANDCTYCGFSMSNK--IKR 101 (371) T ss_pred HHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHH-HHHHCCCEEEEEECHHH-HCCCCCCCEECCCCCCCC--CCC T ss_conf 99999715799989999886974788999999999999-99873985899850440-222177887589867787--630 Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCCEEEE Q ss_conf 00068579999999999649838997303688874428999998876213688324102569999999874157606975 Q gi|254780485|r 85 SKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLDYYNH 164 (328) Q Consensus 85 ~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~ 164 (328) T Consensus 102 ~-~Ls~eEI~~E~~ai~~~G~k~ILLvtGE-~~~~~~~~Yi~~~v~~ik~~f~~v~iev~Pl~~eeY~~L~~aG~d~~~v 179 (371) T PRK09240 102 K-TLDEEEIEREMAAIKKLGFEHILLVTGE-HEAKVGVDYIRRALPLAREYFSSVAIEVQPLSEEEYAELVELGLDGVTV 179 (371) T ss_pred C-CCCHHHHHHHHHHHHHCCCCEEEEECCC-CCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCCEEEE T ss_conf 0-2899999999999997695238854057-8776988999999999997567407995259989999999859986999 Q ss_pred ECCC-CHHHHHCCC---CCCCHHHHHHHHHHHHHCCC-CCCCEEEECCCCCHHHHHHHHHHHHHCCCC----CCEEECCC Q ss_conf 1343-777732058---88898999999999998798-557707866898999999999999740888----86020541 Q gi|254780485|r 165 NIDT-SERFYPHVT---TTHTFEDRLQTLENVRKSGI-KVCCGGILGLGEMIDDRIDMLLTLANLSTP----PESIPINL 235 (328) Q Consensus 165 ~let-~~~~~~~~~---~~~~~~~~l~~~~~a~~~G~-~~~sg~l~G~gEt~eeri~~l~~lr~l~~~----~~~v~~~~ 235 (328) T Consensus 180 yQETY~~~~Y~~lHp~G~K~dy~~RL~a~eRa~~aGi~~vgiGaLlGL~dwr~e~~~~~~Ha~~L~~~y~~~~~siS~PR 259 (371) T PRK09240 180 YQETYNPATYAKHHLRGPKQDFFYRLETPERAARAGIRKIGLGALLGLSDWRTDALMTALHLRYLQRKYWRARYSISFPR 259 (371) T ss_pred EEHHCCHHHHHHHCCCCCCCCCHHHCCCHHHHHHCCCCEECEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCC T ss_conf 60325999999858899854525452378889875997036110226546899999999999999987799875763575 Q ss_pred EEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCE-------------- Q ss_conf 120487412445687989999999999996868721423115651656899999809988997786-------------- Q gi|254780485|r 236 LIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDT-------------- 301 (328) Q Consensus 236 ~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~-------------- 301 (328) T Consensus 260 lrP~~g~-~~p~~~vsD~~l~q~i~a~Rl~~P~~gi~lST-RE--~~~~Rd~li~lGvT~mSAgs~T~~GGy~~~~~~~~ 335 (371) T PRK09240 260 LRPCTGG-FEPKSIVSDRQLVQLICAFRLFLPDVEISLST-RE--SPEFRDNLIPLGITKMSAGSSTQPGGYADPEKELE 335 (371) T ss_pred CCCCCCC-CCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEC-CC--CHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCC T ss_conf 3368899-88986578899999999999866555616864-78--98999888852560255555468877789998866 Q ss_pred -EECCCCCCHHHHHHHHHHCCCCCCCC Q ss_conf -65158889899999999829853247 Q gi|254780485|r 302 -LLTAKNPSYNKDTILFNRLGLIPDLS 327 (328) Q Consensus 302 -~~t~~g~~~~~~~~~i~~~G~~P~~~ 327 (328) T Consensus 336 QF~i~D~Rs~~Ev~~~l~~~Gy~Pv~k 362 (371) T PRK09240 336 QFEISDDRSVEEVAAALRAQGLQPVWK 362 (371) T ss_pred CCCCCCCCCHHHHHHHHHHCCCEECCC T ss_conf 653799989999999999879910316 |
|
| >TIGR02351 thiH thiazole biosynthesis protein ThiH; InterPro: IPR012726 Members of this protein family are the ThiH proteins involved in thiamine biosynthesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=355.36 Aligned_cols=309 Identities=24% Similarity=0.313 Sum_probs=272.2 Q ss_pred HHHCCCCCCCCHHHHHHHHC---CCHH-HHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 42002344789999999973---9918-9999999998886289856999864530786834232124335477756410 Q gi|254780485|r 10 ENPTKKPKVWTSKEVFQIYN---MPFN-DLLFWSHTVHRKNFEPNHIQLSKLLNIKTGGCPENCGYCNQSVHNKSKLKAS 85 (328) Q Consensus 10 ~~~~~~~e~ls~eea~~L~~---~~~~-el~~~Aa~~~r~~~~g~~V~~~~~in~~TN~C~~~C~fCaf~~~~~~~~~~~ 85 (328) T Consensus 28 eraL~~~e~~~~~D~~aLlSPaA~~YLE~mA~~a~~lt~~rF-G~ti~Lf~PLYl-SN~C~N~C~YCGF~~~NK--IkR- 102 (378) T TIGR02351 28 ERALNKREHLSLEDFLALLSPAAEPYLEEMAQKAKKLTRKRF-GNTISLFTPLYL-SNYCSNKCVYCGFSMSNK--IKR- 102 (378) T ss_pred HHHHCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC-CCCCEEHHHHHH-HHCCCCCCCCCCCCCCCC--HHH- T ss_conf 997245767898888631143010689999999998738763-781000133456-541487521046578673--020- Q ss_pred CCCCHHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCCEEEE Q ss_conf 0068579999999999649-838997303688874428999998876213688324102569999999874157606975 Q gi|254780485|r 86 KLINVDQVLKEAKNAKENG-ATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLDYYNH 164 (328) Q Consensus 86 ~~~~~Eei~~~a~~~~~~G-~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~ 164 (328) T Consensus 103 ~~Ln~~Ei~~E~~aI~k~gPf~~iLlvtGE~e~-~~g~~Yi~~~~~l~k~~F~~l~iEv~Pl~~eeYk~L~~~Gld~V~V 181 (378) T TIGR02351 103 KKLNEEEIEREIEAIKKSGPFKEILLVTGESEK-AAGVEYIEEAIKLAKEYFSSLAIEVQPLTEEEYKKLKEAGLDGVTV 181 (378) T ss_pred CCCCHHHHHHHHHHHHHCCCCHHEEEECCCCCC-CCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEE T ss_conf 048888999999998620770130011157775-5883789999999875278544887307704568897708881588 Q ss_pred ECCC-CHHHHHCCCC---CCCHHHHHHHHHHHHHCCC-CCCCEEEECCCC-CHHHHHHHHHHHHHCCCCC----CEEECC Q ss_conf 1343-7777320588---8898999999999998798-557707866898-9999999999997408888----602054 Q gi|254780485|r 165 NIDT-SERFYPHVTT---THTFEDRLQTLENVRKSGI-KVCCGGILGLGE-MIDDRIDMLLTLANLSTPP----ESIPIN 234 (328) Q Consensus 165 ~let-~~~~~~~~~~---~~~~~~~l~~~~~a~~~G~-~~~sg~l~G~gE-t~eeri~~l~~lr~l~~~~----~~v~~~ 234 (328) T Consensus 182 yQETYn~~~Y~~~H~~G~K~~F~yRl~tpeR~a~AG~~kIg~GaLlGL~dnwR~Da~~~a~H~~YL~~~Yw~~~~SiS~P 261 (378) T TIGR02351 182 YQETYNEKKYKKHHLAGKKKDFRYRLETPERIAKAGMRKIGIGALLGLEDNWRTDAFFTAYHLRYLQKKYWKTKYSISVP 261 (378) T ss_pred EEECCCHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCC T ss_conf 76516742154437666877644105604678661874021253430122422899999999999986368330303254 Q ss_pred CEEECCCC----CCCCCC-CCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEE------CCEE- Q ss_conf 11204874----124456-87989999999999996868721423115651656899999809988997------7866- Q gi|254780485|r 235 LLIPIPGS----KFEENK-KVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFV------GDTL- 302 (328) Q Consensus 235 ~~~p~~gt----~l~~~~-~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~------g~~~- 302 (328) T Consensus 262 RLRP~~n~aPasG~~p~~~~~~d~~LvQ~~cAyRLF~p~~~IslST-RE--~~~FRDn~~pLGiT~~SAGssT~pGGy~e 338 (378) T TIGR02351 262 RLRPCTNDAPASGLKPKVKIVTDRELVQLICAYRLFDPDVEISLST-RE--SKKFRDNVIPLGITKMSAGSSTEPGGYSE 338 (378) T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCC-CC--CHHHHHHHHHHHHCCCCCCCCCCCCCCCC T ss_conf 3367668976467856665257678899999998734104744020-25--65456643366322011220158866203 Q ss_pred -ECCC---------CCCHHHHHHHHHHCCCCCCCC Q ss_conf -5158---------889899999999829853247 Q gi|254780485|r 303 -LTAK---------NPSYNKDTILFNRLGLIPDLS 327 (328) Q Consensus 303 -~t~~---------g~~~~~~~~~i~~~G~~P~~~ 327 (328) T Consensus 339 C~~~~~leQFeI~D~Rsv~Ev~~~lr~~G~~PVwk 373 (378) T TIGR02351 339 CSEKKGLEQFEISDERSVAEVEEDLRKKGLQPVWK 373 (378) T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC T ss_conf 78888875101246788889999998628896000 |
They are homologues of the BioB protein of biotin biosynthesis. Genes encoding these proteins are generally found in operons with other thiamin biosynthesis genes. ; GO: 0005506 iron ion binding, 0051539 4 iron 4 sulfur cluster binding, 0009228 thiamin biosynthetic process. |
| >PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=343.48 Aligned_cols=317 Identities=22% Similarity=0.329 Sum_probs=271.0 Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHH---HHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCC Q ss_conf 557321342002344789999999973991899---99999998886289856999864530786834232124335477 Q gi|254780485|r 3 RSTVVPEENPTKKPKVWTSKEVFQIYNMPFNDL---LFWSHTVHRKNFEPNHIQLSKLLNIKTGGCPENCGYCNQSVHNK 79 (328) Q Consensus 3 ~~~~~~~~~~~~~~e~ls~eea~~L~~~~~~el---~~~Aa~~~r~~~~g~~V~~~~~in~~TN~C~~~C~fCaf~~~~~ 79 (328) T Consensus 30 ~~~v~~il~Ka~~~~gL~~~e~A~LL~~~d~e~~eem~~~A~~ik~~~yGnrIvLFAPLYl-SN~C~N~C~YCGF~~~Nk 108 (471) T PRK09613 30 KEEIREIIEKALEKEGLSPEETAVLLNVEDEELLEEIFKAAREIKEKIYGNRIVLFAPLYI-SNYCVNNCVYCGFRRSNK 108 (471) T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECHHH-HCCCCCCCEECCCCCCCC T ss_conf 8999999999986289999999999558998999999999999999861875899854112-033367875378747787 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCC------EEEECCCCCHHHHHH Q ss_conf 75641000685799999999996498389973036888744289999988762136883------241025699999998 Q gi|254780485|r 80 SKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLE------TCMTLGMLSFEQAQI 153 (328) Q Consensus 80 ~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~------i~~~~g~~~~~~~~~ 153 (328) T Consensus 109 ~-i~R-k~Lt~eEi~~E~~al~~~G~krilLvtGE-~p~~~~~~Yi~~~i~~iy~~~~~~g~IrrvnVei~Pl~~eeY~~ 185 (471) T PRK09613 109 E-LKR-KKLTQEEIREEVKALESMGHKRLALVAGE-HPVNCDIDYILESIKTIYSTKNGNGEIRRVNVNIAPTTVENYKK 185 (471) T ss_pred C-CCC-CCCCHHHHHHHHHHHHHCCCCEEEEEECC-CCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHHHH T ss_conf 7-763-37899999999999997697318987146-88879889999999999875246785336889944798699999 Q ss_pred HHCCCCCEEEEECCC-CHHHHHCCC---CCCCHHHHHHHHHHHHHCCC-CCCCEEEECCCCCHHHHHHHHHHHHHCCC-- Q ss_conf 741576069751343-777732058---88898999999999998798-55770786689899999999999974088-- Q gi|254780485|r 154 LSKAGLDYYNHNIDT-SERFYPHVT---TTHTFEDRLQTLENVRKSGI-KVCCGGILGLGEMIDDRIDMLLTLANLST-- 226 (328) Q Consensus 154 Lk~aG~~~~~~~let-~~~~~~~~~---~~~~~~~~l~~~~~a~~~G~-~~~sg~l~G~gEt~eeri~~l~~lr~l~~-- 226 (328) T Consensus 186 L~~aGigt~~vfQETYh~~tY~~~Hp~GpK~dy~~RL~a~dRA~~AGi~dVGiGaLlGL~dwr~e~~~l~~Ha~~Le~~y 265 (471) T PRK09613 186 LKEAGIGTYQLFQETYHKPTYEKMHPAGPKSNYDWRLTAMDRAMEAGIDDVGIGVLFGLYDYRFEVLGLLMHAEHLEERF 265 (471) T ss_pred HHHCCCCEEEEEEEECCHHHHHHHCCCCCCCCCHHHCCCHHHHHHCCCCEECCHHEECCCHHHHHHHHHHHHHHHHHHHC T ss_conf 99869996999863078878998587898656333415788898759971360020265368999999999999999975 Q ss_pred --CCCEEECCCEEECCCCCCCC--CCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCE- Q ss_conf --88602054112048741244--5687989999999999996868721423115651656899999809988997786- Q gi|254780485|r 227 --PPESIPINLLIPIPGSKFEE--NKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDT- 301 (328) Q Consensus 227 --~~~~v~~~~~~p~~gt~l~~--~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~- 301 (328) T Consensus 266 g~g~hTIS~PRlrPa~g~~~~~~pp~~VsD~~f~qiiaa~RL~vP~tGiilST-RE--~~~~Rd~li~lGVsqmSAGS~T 342 (471) T PRK09613 266 GVGPHTISVPRLEPALGSDLSENPPYLVSDEDFKKIVAILRLAVPYTGMILST-RE--SAELRDEVLELGVSQISAGSRT 342 (471) T ss_pred CCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEC-CC--CHHHHHHHHHHCCEEECCCCCC T ss_conf 99985663675436899976678998679899999999999856545736853-79--9889998885346123345536 Q ss_pred -----EE------------CCCCCCHHHHHHHHHHCCCCCCC Q ss_conf -----65------------15888989999999982985324 Q gi|254780485|r 302 -----LL------------TAKNPSYNKDTILFNRLGLIPDL 326 (328) Q Consensus 302 -----~~------------t~~g~~~~~~~~~i~~~G~~P~~ 326 (328) T Consensus 343 ~vGGY~~~~~~~~~~~QF~i~D~Rs~dEvi~~l~~~gyiPSf 384 (471) T PRK09613 343 GVGGYSESEQEEEEKAQFELGDHRSLDEVIRELCEMGYIPSF 384 (471) T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC T ss_conf 887667655677667886678998999999999977997730 |
|
| >PRK09234 fbiC FO synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=278.21 Aligned_cols=309 Identities=17% Similarity=0.252 Sum_probs=245.2 Q ss_pred HHHCCCCCCCCHHHHHHHHCC---CHHHHHHHHHHHHHHHCC----CCEEEEEEEEEEC-CCCCCCCCCCCCCCCCCCCC Q ss_conf 420023447899999999739---918999999999888628----9856999864530-78683423212433547775 Q gi|254780485|r 10 ENPTKKPKVWTSKEVFQIYNM---PFNDLLFWSHTVHRKNFE----PNHIQLSKLLNIK-TGGCPENCGYCNQSVHNKSK 81 (328) Q Consensus 10 ~~~~~~~e~ls~eea~~L~~~---~~~el~~~Aa~~~r~~~~----g~~V~~~~~in~~-TN~C~~~C~fCaf~~~~~~~ 81 (328) T Consensus 22 l~r~~~~~~~~~~~~~~l~~~~~~~~~~l~~~a~~~rd~~~~~~g~~~viTyS~kVFiPLT~lCrd~C~YCtF~~~p~~~ 101 (846) T PRK09234 22 LRRARDGVALDVDEAAVLLTARGDDLADLCASAARVRDAGLGAAGRPGVVTYSRKVFIPLTRLCRDRCHYCTFATVPGKL 101 (846) T ss_pred HHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHCCCCCCCCCCCCCCC T ss_conf 99865378778899999997234449999999998874033324898737657864314306876368877643688655 Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC--------------CCCHHHHHHHHHHHC-CCCCCEEEECCCC Q ss_conf 6410006857999999999964983899730368887--------------442899999887621-3688324102569 Q gi|254780485|r 82 LKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPK--------------ERDLSIIVDMIKGVK-SLGLETCMTLGML 146 (328) Q Consensus 82 ~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~--------------~~~~~~~~e~i~~i~-~~~~~i~~~~g~~ 146 (328) T Consensus 102 ~~--~~l~~deV~~ia~~g~~~GC~EALftlGd~PE~r~~~a~~~L~~~G~~st~~Yl~~~~~~vl~etgLLPH~N~G~l 179 (846) T PRK09234 102 RA--AYLSPDEVLDIARAGAAAGCKEALFTLGDRPEDRWPEAREWLDERGYDSTLDYVRAMAIRVLEETGLLPHLNPGVM 179 (846) T ss_pred CC--CCCCHHHHHHHHHHHHHCCCCEEHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC T ss_conf 67--7789999999999999869956131468886774899999999719845999999999999986598887898889 Q ss_pred CHHHHHHHHCCCCCEEEEECCC-CHHHH------HCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHH Q ss_conf 9999998741576069751343-77773------2058888989999999999987985577078668989999999999 Q gi|254780485|r 147 SFEQAQILSKAGLDYYNHNIDT-SERFY------PHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLL 219 (328) Q Consensus 147 ~~~~~~~Lk~aG~~~~~~~let-~~~~~------~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~ 219 (328) T Consensus 180 s~~el~~Lk~v~~SmGl-MLEs~s~rL~~~~g~~H~~sP~K~P~~Rl~tl~~AG~l~iPfTTGiLiGIGEt~~er~~sL~ 258 (846) T PRK09234 180 SWSELARLKPVAPSMGM-MLETTSRRLFETKGGAHYGSPDKDPAVRLRVLEDAGRLSVPFTTGILIGIGETLAERAESLF 258 (846) T ss_pred CHHHHHHHHCCCCCCEE-EECCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHH T ss_conf 99999985236875204-51103464424789888899998989999999985404797321113257799999999999 Q ss_pred HHHHCCCCC---CEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHH-CHHHHHHHHHHCCC- Q ss_conf 997408888---6020541120487412445687989999999999996868721423115651-65689999980998- Q gi|254780485|r 220 TLANLSTPP---ESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMM-SDELQALCFFSGAN- 294 (328) Q Consensus 220 ~lr~l~~~~---~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~-~~~~~~~~L~~GaN- 294 (328) T Consensus 259 ai~~~h~~yghIQEVIiQNF~~K~~t~m~~~~~~~~~e~~~~ia~aR~il~~-~i~iQ~P-PNL~~~~~~~~ll~aGi~D 336 (846) T PRK09234 259 AIRKSHREYGHIQEVIVQNFRAKPDTAMAGAPDAGLEDLLATIAVARLVLGP-KMRIQAP-PNLVSRDECAALLGAGIDD 336 (846) T ss_pred HHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-CCEEECC-CCCCCHHHHHHHHHCCCCC T ss_conf 9999999739965798368889989868679997999999999999997399-8568559-9889867899999758745 Q ss_pred --EE--EECCEEE-CCCCCCHHHHHHHHHHCCCC Q ss_conf --89--9778665-15888989999999982985 Q gi|254780485|r 295 --SI--FVGDTLL-TAKNPSYNKDTILFNRLGLI 323 (328) Q Consensus 295 --~~--~~g~~~~-t~~g~~~~~~~~~i~~~G~~ 323 (328) T Consensus 337 wGGISPvT~D~VNPE~pWP~l~~L~~~~~~~G~~ 370 (846) T PRK09234 337 WGGVSPLTPDHVNPERPWPALDELAAVTAEAGFT 370 (846) T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC T ss_conf 5687888777789889998999999999965973 |
|
| >PRK08508 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=491.61 Aligned_cols=274 Identities=40% Similarity=0.653 Sum_probs=262.5 Q ss_pred CEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHH Q ss_conf 85699986453078683423212433547775641000685799999999996498389973036888744289999988 Q gi|254780485|r 50 NHIQLSKLLNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMI 129 (328) Q Consensus 50 ~~V~~~~~in~~TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i 129 (328) T Consensus 2 ~~v~lcsi~n~KSG~C~edC~yCaQs~~~~t~i~~Y~l~~~eeIl~~A~~a~~~G~~rf~lv~sg~~~~~~~~e~v~~~v 81 (279) T PRK08508 2 QEIFLCAISNISSGNCKEDCKYCTQSAHYKADIKRYKRKEIEQIVQEAKMARANGALGFCLVTAGRGLDDKKLEYVAKAA 81 (279) T ss_pred CEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHH T ss_conf 64799888734137999878644481767999861078999999999999997599768999823688754499999999 Q ss_pred HHHCCC--CCCEEEECCCCCHHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECC Q ss_conf 762136--883241025699999998741576069751343777732058888989999999999987985577078668 Q gi|254780485|r 130 KGVKSL--GLETCMTLGMLSFEQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGL 207 (328) Q Consensus 130 ~~i~~~--~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~ 207 (328) T Consensus 82 ~~Ik~~~~~l~~c~slG~l~~e~~~~LkeAGvdrY~hNlETs~~~y~~I~tThty~dRl~tl~~~k~aGl~vCsGgIiGl 161 (279) T PRK08508 82 KAVKKEVPGLHLIACNGMASVEQLKELKKAGIFSYNHNLETSKEFFPKICTTHSWEERFQTCLNAKEAGLGLCSGGIFGL 161 (279) T ss_pred HHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEECCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEECCCEEEC T ss_conf 99863379935761178579999999998397123076676768757658998889999999999981994867854478 Q ss_pred CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHH Q ss_conf 98999999999999740888860205411204874124456879899999999999968687214231156516568999 Q gi|254780485|r 208 GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQAL 287 (328) Q Consensus 208 gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~ 287 (328) T Consensus 162 GEt~edrve~a~~L~eL~--~dsVPIN~liPi~GTPLe-~~~l~~~e~lr~iAl~RlilP~a~Ir~agGRe~~l~~~q~~ 238 (279) T PRK08508 162 GESWEDRISMLKSLASLS--PHSTPINFFIPNPALPLD-TPTLSADEALEIVRLAKEALPNARLMVAGGREVVFGERQYE 238 (279) T ss_pred CCCHHHHHHHHHHHHHCC--CCEECCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHCHHHHHH T ss_conf 999899999999998389--987515676589999888-89999999999999999978987656246524455636999 Q ss_pred HHHHCCCEEEECCEEECCCCCCHHHHHHHHHHCCCCCCCC Q ss_conf 9980998899778665158889899999999829853247 Q gi|254780485|r 288 CFFSGANSIFVGDTLLTAKNPSYNKDTILFNRLGLIPDLS 327 (328) Q Consensus 288 ~L~~GaN~~~~g~~~~t~~g~~~~~~~~~i~~~G~~P~~~ 327 (328) T Consensus 239 ~~~aGaN~i~~G~yL-Tt~G~~~~~D~~mi~~lG~~v~~~ 277 (279) T PRK08508 239 IFEAGANAIVIGDYL-TTKGEAPKKDIEKLKSLGFEFASS 277 (279) T ss_pred HHHHCCCEEEECCCC-CCCCCCHHHHHHHHHHCCCEEECC T ss_conf 998468468886652-789978679999999869934124 |
|
| >TIGR00423 TIGR00423 conserved hypothetical protein TIGR00423; InterPro: IPR005244 This entry describes a family of conserved hypothetical proteins with no known function | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=461.85 Aligned_cols=272 Identities=19% Similarity=0.333 Sum_probs=229.4 Q ss_pred EEEEEEEEEC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCH-----HHH Q ss_conf 6999864530-7868342321243354777564100068579999999999649838997303688874428-----999 Q gi|254780485|r 52 IQLSKLLNIK-TGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDL-----SII 125 (328) Q Consensus 52 V~~~~~in~~-TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~-----~~~ 125 (328) T Consensus 1 VtfvVNRNINfTNIC~~~C~FCAF~~~~k~--~~~Y~Ls~eEI~~Kv~ea~~~G~tE~~iQGGlnP~--~~~nGssl~yy 76 (331) T TIGR00423 1 VTFVVNRNINFTNICVGKCKFCAFRRREKD--KDAYVLSLEEILRKVKEAVAKGATEICIQGGLNPQ--LDINGSSLEYY 76 (331) T ss_pred CEEECCCCCCCCHHHHHCCCCCCCCCCCCC--CCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCC--CCCCCCHHHHH T ss_conf 935316656753002324796331134689--88814077999999999997198278852342788--76454149999 Q ss_pred HHHHHHHCCCCC---CEEEEC-------------CCCC-HHHHHHHHCCCCCEE-EEECCC-CHHHHHCCCC-CCCHHHH Q ss_conf 998876213688---324102-------------5699-999998741576069-751343-7777320588-8898999 Q gi|254780485|r 126 VDMIKGVKSLGL---ETCMTL-------------GMLS-FEQAQILSKAGLDYY-NHNIDT-SERFYPHVTT-THTFEDR 185 (328) Q Consensus 126 ~e~i~~i~~~~~---~i~~~~-------------g~~~-~~~~~~Lk~aG~~~~-~~~let-~~~~~~~~~~-~~~~~~~ 185 (328) T Consensus 77 ~~l~~~Ik~~~pPyG~~hiHafSp~Ev~f~A~~~~~~~e~EvL~~LK~aGL~SmPGtgAEILdD~vRr~IcP~K~~s~eW 156 (331) T TIGR00423 77 EELFRAIKQEFPPYGDVHIHAFSPMEVYFLAKNEGLSIEKEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEW 156 (331) T ss_pred HHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHCCCCCCHHHH T ss_conf 99999997417896524761468689999998618978899999988850356777622653033587547798872789 Q ss_pred HHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHC------CCCCCEEE--CCCEEECCCCC--CCC--CCCCCHH Q ss_conf 999999998798557707866898999999999999740------88886020--54112048741--244--5687989 Q gi|254780485|r 186 LQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANL------STPPESIP--INLLIPIPGSK--FEE--NKKVDPI 253 (328) Q Consensus 186 l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l------~~~~~~v~--~~~~~p~~gt~--l~~--~~~~~~~ 253 (328) T Consensus 157 lev~~~AH~~GiptTATMMfGHve~~~h~v~HL~rir~iQ~~~~~QekTGGFteFIPL~F~~~n~P~~~~~~~~~~~s~~ 236 (331) T TIGR00423 157 LEVIKTAHRLGIPTTATMMFGHVEEPEHRVEHLLRIRKIQSTSLVQEKTGGFTEFIPLPFQPENAPIYLEGEVRKGASGI 236 (331) T ss_pred HHHHHHHHHCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCHH T ss_conf 99999998666962101123552767889999999987517002335227732101467788877711140023788868 Q ss_pred HHHHHHHHHHHHCC-CCCCEEEEHHHHHCHHHHHHHHHHCCC---EEEECCEEECCCCC------CHHHHHHHHHHCCCC Q ss_conf 99999999999686-872142311565165689999980998---89977866515888------989999999982985 Q gi|254780485|r 254 EHVRIISVARILMP-KSRLRLAAGRAMMSDELQALCFFSGAN---SIFVGDTLLTAKNP------SYNKDTILFNRLGLI 323 (328) Q Consensus 254 e~lr~iAi~RL~lP-~~~i~i~~~~~~~~~~~~~~~L~~GaN---~~~~g~~~~t~~g~------~~~~~~~~i~~~G~~ 323 (328) T Consensus 237 ~~Lk~~AiSRI~L~gk~I~NIqASWV~lG~~~a~vAL~~GANDlGGTl~EE~i~~aAGA~~~~~~~~E~l~~~ik~~G~~ 316 (331) T TIGR00423 237 DDLKVIAISRILLNGKNIKNIQASWVKLGLKLAQVALEFGANDLGGTLMEENISKAAGAKTGVGLEVEELIELIKDAGRV 316 (331) T ss_pred HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCC T ss_conf 99999999998828841223250688854789999998177436875786532110278888867889999999984885 Q ss_pred CCCC Q ss_conf 3247 Q gi|254780485|r 324 PDLS 327 (328) Q Consensus 324 P~~~ 327 (328) T Consensus 317 ~~~R 320 (331) T TIGR00423 317 PAQR 320 (331) T ss_pred CCCC T ss_conf 3101 |
. |
| >TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=383.21 Aligned_cols=266 Identities=20% Similarity=0.284 Sum_probs=213.7 Q ss_pred EEEEEEEEC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHH Q ss_conf 999864530-7868342321243354777564100068579999999999649838997303688874428999998876 Q gi|254780485|r 53 QLSKLLNIK-TGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKG 131 (328) Q Consensus 53 ~~~~~in~~-TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~ 131 (328) T Consensus 1 Ty~~N~~In~TNiC~~~C~FCaF~r~~~~--~~ay~ls~eei~~~~~ea~~~G~tEv~i~gG~~P~--~~~~~~~~~l~~ 76 (322) T TIGR03550 1 TYSRNVFIPLTRLCRNRCGYCTFRRPPGE--LEAALLSPEEVLEILRKGAAAGCTEALFTFGEKPE--ERYPEAREWLAE 76 (322) T ss_pred CCCCCCCCCCCCCHHCCCCCCCCCCCCCC--CCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCHH--HHHHHHHHHHHH T ss_conf 99872156887203176967885168999--88774799999999999997798799964886800--349999999998 Q ss_pred H-----------------CCCCCCEEEECCCCCHHHHHHHHC--CCCCEEEEECCC-CHH----HHHCCCCCCCHHHHHH Q ss_conf 2-----------------136883241025699999998741--576069751343-777----7320588889899999 Q gi|254780485|r 132 V-----------------KSLGLETCMTLGMLSFEQAQILSK--AGLDYYNHNIDT-SER----FYPHVTTTHTFEDRLQ 187 (328) Q Consensus 132 i-----------------~~~~~~i~~~~g~~~~~~~~~Lk~--aG~~~~~~~let-~~~----~~~~~~~~~~~~~~l~ 187 (328) T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~t~eel~~Lk~~~aglg~---~~e~~ae~l~~~vr~~~~P~K~~~~~l~ 153 (322) T TIGR03550 77 MGYDSTLEYLRELCELALEETGLLPHTNPGVMSRDELARLKPVNASMGL---MLETTSERLCKGEAHYGSPGKDPAVRLE 153 (322) T ss_pred HCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCHHH---HHHHHHHHHCCCCCCCCCCCCCHHHHHH T ss_conf 4886178999999999998633565447676889999987631862666---7888887532223567799988799999 Q ss_pred HHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEE---ECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 99999987985577078668989999999999997408888602---054112048741244568798999999999999 Q gi|254780485|r 188 TLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESI---PINLLIPIPGSKFEENKKVDPIEHVRIISVARI 264 (328) Q Consensus 188 ~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v---~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL 264 (328) T Consensus 154 i~~~Ah~lGi~ttaTml~GhiEt~eeri~HL~~lR~lQdetggf~efIp~~F~p~~~~~~~~~~~~s~~e~Lr~iAvaRl 233 (322) T TIGR03550 154 TIEDAGRLKIPFTTGILIGIGETREERAESLLAIRELHERYGHIQEVIVQNFRAKPGTPMENHPEPSLEEMLRTVAVARL 233 (322) T ss_pred HHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH T ss_conf 99999985996151234204699999999999999878652965799626766899864556999899999999999999 Q ss_pred HCCCCCCEEEEHHHHHCHHHHHHHHHHCCC---EE--EECCEEECCC-CCCHHHHHHHHHHCCCCCCCC Q ss_conf 686872142311565165689999980998---89--9778665158-889899999999829853247 Q gi|254780485|r 265 LMPKSRLRLAAGRAMMSDELQALCFFSGAN---SI--FVGDTLLTAK-NPSYNKDTILFNRLGLIPDLS 327 (328) Q Consensus 265 ~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN---~~--~~g~~~~t~~-g~~~~~~~~~i~~~G~~P~~~ 327 (328) T Consensus 234 ~Ldn~-~~Iqa~-~~lg~~~~q~aL~~GanDlGG~~~~~~~~v~~~~~~~~~~el~~~i~~aG~~p~eR 300 (322) T TIGR03550 234 ILPPD-ISIQVP-PNLNREDYRLLLDAGIDDWGGVSPVTPDHVNPEAPWPEIDELARATEEAGFTLKER 300 (322) T ss_pred HCCCC-CEEEEC-CCCCHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCC T ss_conf 75999-728608-85675899999967997788877142754488899999999999999849986652 |
This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria. |
| >PRK06245 cofG FO synthase subunit 1; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=366.60 Aligned_cols=272 Identities=22% Similarity=0.300 Sum_probs=221.3 Q ss_pred HCCCCEEEEEEEEEEC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHH Q ss_conf 6289856999864530-786834232124335477756410006857999999999964983899730368887442899 Q gi|254780485|r 46 NFEPNHIQLSKLLNIK-TGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSI 124 (328) Q Consensus 46 ~~~g~~V~~~~~in~~-TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~ 124 (328) T Consensus 2 ~~~G~~VTy~~n~~In~TNiC~~~C~fCaF~~~~~---~-a~~ls~eev~~~~~ea~~~G~tEvl~~gG~~P~~--~~~~ 75 (336) T PRK06245 2 VNMSKIVTYSRNVFIPLTYECRNRCGYCTFRPDPG---E-ASLLSPEEVREILERGQDAGCTEALFTFGEVPDE--SEEI 75 (336) T ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC---C-CCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC--CHHH T ss_conf 98898789818626167754026882586746887---5-6877999999999999976983999805788663--6899 Q ss_pred HH---------------HHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCC---CCCCCHHHH Q ss_conf 99---------------988762136883241025699999998741576069751343-77773205---888898999 Q gi|254780485|r 125 IV---------------DMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHV---TTTHTFEDR 185 (328) Q Consensus 125 ~~---------------e~i~~i~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~---~~~~~~~~~ 185 (328) T Consensus 76 ~~~l~~~~~~~~~~~~~~~~~~~le~gllph~n~G~ls~~el~~Lk~v~a-smG~mlE~~se~l~~~~h~~~P~K~~~~r 154 (336) T PRK06245 76 REQLAEPGYSSWLEYLYDLCELALETGLLPHTNAGILSRAEMEALKPVNA-SMGLMLEQTSPRLLETVHRHSPGKDPELR 154 (336) T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCC-CCCCCCHHHHHHHHHHHCCCCCCCCHHHH T ss_conf 99999707550778899985888763655223667678999998753597-66757123568988763044898788999 Q ss_pred HHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEE---ECCCEEECCCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 9999999987985577078668989999999999997408888602---0541120487412445687989999999999 Q gi|254780485|r 186 LQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESI---PINLLIPIPGSKFEENKKVDPIEHVRIISVA 262 (328) Q Consensus 186 l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v---~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~ 262 (328) T Consensus 155 L~~ie~Ah~lgIptTatmL~G~gET~eeRi~hL~~IR~lq~~tGgfqefI~~~F~p~~~t~m~~~~~~~~~e~l~~iAvA 234 (336) T PRK06245 155 LETIEWAGELKIPFTTGLLIGIGETWEDRIESLEAIAELHERYGHIQEVIIQNFRPKPGIPMENHPEPSPEEMPRVVALA 234 (336) T ss_pred HHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHH T ss_conf 99999999839972202452066999999999999999886349757995068778987533469997999999999999 Q ss_pred HHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCC---EEE--ECCEEE-CCCCCCHHHHHHHHHHCCCCCCC Q ss_conf 99686872142311565165689999980998---899--778665-15888989999999982985324 Q gi|254780485|r 263 RILMPKSRLRLAAGRAMMSDELQALCFFSGAN---SIF--VGDTLL-TAKNPSYNKDTILFNRLGLIPDL 326 (328) Q Consensus 263 RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN---~~~--~g~~~~-t~~g~~~~~~~~~i~~~G~~P~~ 326 (328) T Consensus 235 RiiL~~~-i~IQap-pnL~~~~~~~~L~~GanDlGGisp~t~d~vnpe~~wp~~~~l~~~~~~~g~~l~~ 302 (336) T PRK06245 235 RLILPPD-ISIQVP-PNLVDDTGLLFLEAGADDLGGISPVTKDEVNPEYPWPDIDELKEILEEAGWQLKE 302 (336) T ss_pred HHHCCCC-CEEEEC-CCCCCHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHCCCCCCC T ss_conf 9966998-579769-8678557899986787667887757666018899998999999999975996564 |
|
| >TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase; InterPro: IPR004559 Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins called HemN (IPR004558 from INTERPRO) | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.4e-10 Score=88.95 Aligned_cols=236 Identities=19% Similarity=0.265 Sum_probs=153.0 Q ss_pred EEECCCCCCCCCCCCCCCCCC-CCCCC--CCC-CCCHHHHHHHHHHH----HHCCCEEEEEECCCCCC-CCCCHHHHHHH Q ss_conf 453078683423212433547-77564--100-06857999999999----96498389973036888-74428999998 Q gi|254780485|r 58 LNIKTGGCPENCGYCNQSVHN-KSKLK--ASK-LINVDQVLKEAKNA----KENGATRYCMGAAWREP-KERDLSIIVDM 128 (328) Q Consensus 58 in~~TN~C~~~C~fCaf~~~~-~~~~~--~~~-~~~~Eei~~~a~~~----~~~G~~~~~l~~~~~~~-~~~~~~~~~e~ 128 (328) T Consensus 5 IHIP--fCe~kC~YCdFNsy~~ksd~p~~eY~~aL~~d-l~~~l~~t~dsiqQ~~l~siFIGGGTP~~lS~e~~~~l~~~ 81 (371) T TIGR00539 5 IHIP--FCEQKCGYCDFNSYAQKSDIPKEEYLQALLQD-LKAALAKTDDSIQQEDLKSIFIGGGTPSLLSAEALKKLLEE 81 (371) T ss_pred EECC--HHCCCCCCCCCCCHHHHCCCCHHHHHHHHHHH-HHHHHHHCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHH T ss_conf 5560--22375888653324554278567999999999-99999860443236765568856887414689999999999 Q ss_pred HHHHCC---CCCCE--EEECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCCCC-CCC Q ss_conf 876213---68832--41025699999998741576069751343-777732058888989999999999987985-577 Q gi|254780485|r 129 IKGVKS---LGLET--CMTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSGIK-VCC 201 (328) Q Consensus 129 i~~i~~---~~~~i--~~~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~-~~s 201 (328) T Consensus 82 I~~~~~P~sd~~Eit~eANP~~~~ae~~kglk~aGinRlS~GvQsF~dDkL~~lgR~H~~k~~~~a~e~a~~sG~enisl 161 (371) T TIGR00539 82 IKKQLKPLSDDIEITVEANPDLVEAEKLKGLKEAGINRLSLGVQSFEDDKLEKLGRVHKAKDVASAVELAKKSGLENISL 161 (371) T ss_pred HHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCH T ss_conf 87521743102111110782125698863676557023321334541557888642113334667999998717520005 Q ss_pred EEEECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCC------CCHHHHHHHHHHHHHHCCCCCCE-- Q ss_conf 078668-989999999999997408888602054112048741244568------79899999999999968687214-- Q gi|254780485|r 202 GGILGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKK------VDPIEHVRIISVARILMPKSRLR-- 272 (328) Q Consensus 202 g~l~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~------~~~~e~lr~iAi~RL~lP~~~i~-- 272 (328) T Consensus 162 DL~~glP~qtl~~l~~~l~~A~eL~~--~H~S~Y~L~vEpnT~f~~~~~KGrlhlP~~~~~a~~~e~v~~~le~~g~~QY 239 (371) T TIGR00539 162 DLMYGLPLQTLEELKEELKLALELDA--EHLSVYALIVEPNTVFEKRAKKGRLHLPDDDALAEIYEVVRELLEAFGYKQY 239 (371) T ss_pred HHHCCCCHHHHHHHHHHHHHHHHCCC--CCCEEEEEEECCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHH T ss_conf 54407861348999999865531784--5112332342233045426888878946703456799999999985582222 Q ss_pred -EE-------------EHHHHHCHHHHHHHHHHCCCEEEECCEE Q ss_conf -23-------------1156516568999998099889977866 Q gi|254780485|r 273 -LA-------------AGRAMMSDELQALCFFSGANSIFVGDTL 302 (328) Q Consensus 273 -i~-------------~~~~~~~~~~~~~~L~~GaN~~~~g~~~ 302 (328) T Consensus 240 E~SnyAkaG~q~KHNL~YW----~~~dYlg~GaGA~G~~~~~r~ 279 (371) T TIGR00539 240 EVSNYAKAGYQVKHNLAYW----SAEDYLGIGAGAHGKVANERT 279 (371) T ss_pred HHHHHHHCCCCCCCCCCCC----CCCCCEEECCCEEEECCCCEE T ss_conf 1238863787620022336----766613533740100147402 |
This family contains a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including Escherichia coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the Escherichia coli hemN family. The member of this family from Bacillus subtilis was shown to complement a hemF/hemN double mutant of Salmonella typhimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize haem de novo. ; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin biosynthetic process, 0005737 cytoplasm. |
| >TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase; InterPro: IPR004558 This family represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.7e-07 Score=69.85 Aligned_cols=239 Identities=18% Similarity=0.256 Sum_probs=142.0 Q ss_pred EEEEEEEEEECCCCCCCCCCCCCCCC---CCCCCCCCCCCCCH-HHHHHHHHHHH-HCCCEEEEEECCCCCCCCCCHHHH Q ss_conf 56999864530786834232124335---47775641000685-79999999999-649838997303688874428999 Q gi|254780485|r 51 HIQLSKLLNIKTGGCPENCGYCNQSV---HNKSKLKASKLINV-DQVLKEAKNAK-ENGATRYCMGAAWREPKERDLSII 125 (328) Q Consensus 51 ~V~~~~~in~~TN~C~~~C~fCaf~~---~~~~~~~~~~~~~~-Eei~~~a~~~~-~~G~~~~~l~~~~~~~~~~~~~~~ 125 (328) T Consensus 51 PLSLY~HiPF----C~~~CyFCgCn~I~t~~~~~~~~Y-L~~l~ke~~l~~~~~d~~R~V~QLHw--GGGTP~YL~~~Q~ 123 (462) T TIGR00538 51 PLSLYVHIPF----CEKACYFCGCNVIITRRKEKKDPY-LEALKKEIALVAPLLDKDREVAQLHW--GGGTPTYLSPEQI 123 (462) T ss_pred CCCCCCCCHH----HHCCCCCCCCCEEECCCCCCHHHH-HHHHHHHHHHHHHHHHCCCCEEEEEC--CCCCCCCCCHHHH T ss_conf 8411245523----412132014661130556510167-99999999998777524894688762--7898333788999 Q ss_pred HHHHHHHCCC------CCCEEEE--CCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCC Q ss_conf 9988762136------8832410--25699999998741576069751343-7777320588889899999999999879 Q gi|254780485|r 126 VDMIKGVKSL------GLETCMT--LGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSG 196 (328) Q Consensus 126 ~e~i~~i~~~------~~~i~~~--~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G 196 (328) T Consensus 124 ~~l~~~i~~~F~nf~~daEiSiEidPR~~~~e~~~~L~~~GFNRlS~GvQDfd~~VQ~avnR~QP~e~i~~~~~~~R~~G 203 (462) T TIGR00538 124 EELMKEIREAFPNFSEDAEISIEIDPRYLTKEVIKALRDEGFNRLSFGVQDFDKEVQQAVNRIQPEEMIFELMEKAREAG 203 (462) T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEECCEECCCHHHHHHHCCCCCHHHHHHHHHHHHHCC T ss_conf 99999999873201158447765237413788999999758966423521078555444313486899999999998669 Q ss_pred CC-CCCEEEECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECC-----CCCCCCCCCCCHHHHHHHHH--HHHHH-- Q ss_conf 85-577078668-989999999999997408888602054112048-----74124456879899999999--99996-- Q gi|254780485|r 197 IK-VCCGGILGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIP-----GSKFEENKKVDPIEHVRIIS--VARIL-- 265 (328) Q Consensus 197 ~~-~~sg~l~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~-----gt~l~~~~~~~~~e~lr~iA--i~RL~-- 265 (328) T Consensus 204 f~SiN~DLIYGLP~Qt~esF~~Tl~~v~~LnP--DRlAvFnyAyvP~vk~~q~k~~~~~LPS~~~KL~Il~~~I~~L~~~ 281 (462) T TIGR00538 204 FESINLDLIYGLPKQTKESFEKTLEKVAELNP--DRLAVFNYAYVPWVKPAQRKIPEEALPSAEEKLEILEETIAFLTEA 281 (462) T ss_pred CCEEEEEEECCCCCCCHHHHHHHHHHHHHCCC--CEEHHHHHHHHCCHHHHHCCCCHHCCCCHHHHHHHHHHHHHHHHHC T ss_conf 82787420138888786789999999853187--7001210222101577850276200588789999999999999757 Q ss_pred -----------CCCCCC-----------EEEEHHHHHCHHHHHHHHHHCCCEE-EECCEE Q ss_conf -----------868721-----------4231156516568999998099889-977866 Q gi|254780485|r 266 -----------MPKSRL-----------RLAAGRAMMSDELQALCFFSGANSI-FVGDTL 302 (328) Q Consensus 266 -----------lP~~~i-----------~i~~~~~~~~~~~~~~~L~~GaN~~-~~g~~~ 302 (328) T Consensus 282 gY~fIGMDHFAkpddELavAqr~geL~RNFQGYTT--~~~~--~lLG~GvtSIsm~~D~Y 337 (462) T TIGR00538 282 GYVFIGMDHFAKPDDELAVAQRKGELHRNFQGYTT--KKET--DLLGFGVTSISMLGDVY 337 (462) T ss_pred CCEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCC--CCCC--EEEEECHHHHHHHCCCC T ss_conf 97585144577971389999850530005765224--8972--15630110211200212 |
HemN catalyses the anaerobic transformation of coproporhyrinogen-III into protoporphyrinogen-IX during porphyrin biosynthesis. Several species, including Escherichia coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity, IPR004559 from INTERPRO. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterised protein.; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin biosynthetic process, 0005737 cytoplasm. |
| >PRK11194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.3e-05 Score=54.59 Aligned_cols=223 Identities=14% Similarity=0.201 Sum_probs=125.6 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-------CC---CEEEEEECCCCCCCCCCHHHHHHHHHHHC Q ss_conf 683423212433547775641000685799999999996-------49---83899730368887442899999887621 Q gi|254780485|r 64 GCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKE-------NG---ATRYCMGAAWREPKERDLSIIVDMIKGVK 133 (328) Q Consensus 64 ~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~-------~G---~~~~~l~~~~~~~~~~~~~~~~e~i~~i~ 133 (328) T Consensus 112 GC~m~C~FCaTG---~~Gl~--RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~i~NiVfMGMGEPL~--NydnV~~ai~il~ 184 (372) T PRK11194 112 GCALECKFCSTA---QQGFN--RNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMGMGEPLL--NLNNVVPAMEIML 184 (372) T ss_pred CCCCCCCCCCCC---CCHHH--CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHH--HHHHHHHHHHHHC T ss_conf 636899844588---64430--4878899999999999985320123666532167843784255--3999999999864 Q ss_pred CC-CC-----CEEEE-CCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCC---CCCHHHHHHHHHHHH-HCCC---C Q ss_conf 36-88-----32410-25699999998741576069751343-7777320588---889899999999999-8798---5 Q gi|254780485|r 134 SL-GL-----ETCMT-LGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTT---THTFEDRLQTLENVR-KSGI---K 198 (328) Q Consensus 134 ~~-~~-----~i~~~-~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~---~~~~~~~l~~~~~a~-~~G~---~ 198 (328) T Consensus 185 ~~~g~~~s~R~ITvST~Givp~--I~~l~e~~~v~LAiSLHA~~de~R~~lmPin~~ypl~~L~~a~~~y~~~t~~~~~r 262 (372) T PRK11194 185 DDFGFGLSKRRVTLSTSGVVPA--LDKLGDMIDVALAISLHAPNDELRDEIVPINKKYNIETFLAAVRRYLEKSNANQGR 262 (372) T ss_pred CCCCCCCCCCEEEEECCCCCHH--HHHHHHHCCCCEEEEECCCCHHHHHHHHCHHCCCCHHHHHHHHHHHHHHHCCCCCE T ss_conf 8546677778589977787269--99998631565698715898688987711031589899999999999970678852 Q ss_pred C--CCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEH Q ss_conf 5--77078668989999999999997408888602054112048741244568798999999999999686872142311 Q gi|254780485|r 199 V--CCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAG 276 (328) Q Consensus 199 ~--~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~ 276 (328) T Consensus 263 vt~EYvLi~gvNDs~e~A~~L~~llk~~~~---~VNLIp~Np~~~~~~~~---p~~~~i~~F~~~L~----~~gi~vtv- 331 (372) T PRK11194 263 VTVEYVMLDHVNDSTEHAHQLAELLKDTPC---KINLIPWNPFPGAPYGR---SSNSRIDRFSKVLM----EYGFTVIV- 331 (372) T ss_pred EEEEEEEECCCCCCHHHHHHHHHHHCCCCC---CEEEECCCCCCCCCCCC---CCHHHHHHHHHHHH----HCCCCEEE- T ss_conf 899999836878999999999999759986---07745689989988879---99999999999999----78991797- Q ss_pred HHHHCHHHHHHHHHHCCCEEEECCEEECCCCCCHHHHHHH Q ss_conf 5651656899999809988997786651588898999999 Q gi|254780485|r 277 RAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYNKDTIL 316 (328) Q Consensus 277 ~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~~~~~~~~ 316 (328) T Consensus 332 R~s~G~DI-----~A-ACGQLa~~~~----~~~~~~~~~~ 361 (372) T PRK11194 332 RKTRGDDI-----DA-ACGQLAGDVI----DRTKRTLKKR 361 (372) T ss_pred ECCCCCCH-----HH-HHHCCHHHHH----CCCHHHHHHH T ss_conf 58998533-----35-4042625452----6005889988 |
|
| >PRK06267 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=358.25 Aligned_cols=253 Identities=19% Similarity=0.249 Sum_probs=215.6 Q ss_pred CHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCC--CCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHCCCEE Q ss_conf 918999999999888628985699986453078683--423212433547775-64100068579999999999649838 Q gi|254780485|r 31 PFNDLLFWSHTVHRKNFEPNHIQLSKLLNIKTGGCP--ENCGYCNQSVHNKSK-LKASKLINVDQVLKEAKNAKENGATR 107 (328) Q Consensus 31 ~~~el~~~Aa~~~r~~~~g~~V~~~~~in~~TN~C~--~~C~fCaf~~~~~~~-~~~~~~~~~Eei~~~a~~~~~~G~~~ 107 (328) T Consensus 5 ~~~~~~~kAnki~~K-~~Gd~V~LrglIef-sN~C~~~~dC~YCg~sa~~~k~k~p~ryR~s~EeIl~~A~~~~~~G~kt 82 (324) T PRK06267 5 EILENSIKAFKLTEK-HHGNIVSLERALFL-GWYCNLGDPCKFCFMSTQKDKIKDPLKARRRPESILAEAIIMKRIGWKL 82 (324) T ss_pred HHHHHHHHHHHHHHH-HCCCEEEEEEEEEE-CCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCE T ss_conf 999999999999998-35985889788888-2535899998768777777777646655289999999999999839997 Q ss_pred EEEECCCCCCCCCCHHHHHHHHHHHCCC-CCCEEEECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHH Q ss_conf 9973036888744289999988762136-883241025699999998741576069751343-77773205888898999 Q gi|254780485|r 108 YCMGAAWREPKERDLSIIVDMIKGVKSL-GLETCMTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDR 185 (328) Q Consensus 108 ~~l~~~~~~~~~~~~~~~~e~i~~i~~~-~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~ 185 (328) T Consensus 83 ~vLqsGe-dyt---~eel~~ii~~IK~i~~~avtLSlG~~s~e~~~~~~~aG~~~~---lETan~~ly~~i~p~~s~e~R 155 (324) T PRK06267 83 EFISGGY-GYT---TEEINDIIEMISYIQGSKQYLNVGIIDFENLNLNEIEGVVGA---VETVNPKLHEELCPGKPLDKI 155 (324) T ss_pred EEEECCC-CCC---HHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCHHHH---HHCCCHHHHCCCCCCCCHHHH T ss_conf 9980487-799---899999999998601871697158787999977766370142---414798887027999988999 Q ss_pred HHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 99999999879855770786689899999999999974088886020541120487412445687989999999999996 Q gi|254780485|r 186 LQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARIL 265 (328) Q Consensus 186 l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~ 265 (328) T Consensus 156 i~~l~~lk~~G~e~gsG~ivGlGET~ed~~~~~~~lkel~~--d~I~I~~f~P~~gTP~en~p~~t~~e~lk~iA~~RL~ 233 (324) T PRK06267 156 KEMLKKAKDLGLKTGITIILGLGETEDDIELLLNLIEELNL--DRITFYSLNPQKETIFEGKPSPTTLEYMNWVSSVRLN 233 (324) T ss_pred HHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCC--CEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH T ss_conf 99999999839832004687379889999999999997699--9763258458999988999998999999999999996 Q ss_pred CCCCCCEEEEHHHHHCHHHHHHHHHHCCCEE Q ss_conf 8687214231156516568999998099889 Q gi|254780485|r 266 MPKSRLRLAAGRAMMSDELQALCFFSGANSI 296 (328) Q Consensus 266 lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~ 296 (328) T Consensus 234 ~Pki~I~~~t-~~~-~~~ni~~ll~aGan~i 262 (324) T PRK06267 234 FPKIKIITGT-WVD-KLTNIGPLVMAGSNVI 262 (324) T ss_pred CCCCCCCCCC-CCC-CCCCCCHHHHCCCCCC T ss_conf 8871253576-535-7110018776477630 |
|
| >TIGR01212 TIGR01212 radical SAM protein, TIGR01212 family; InterPro: IPR005911 This uncharacterised protein family shows significant similarity to IPR005910 from INTERPRO, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast) | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.2e-15 Score=121.64 Aligned_cols=229 Identities=19% Similarity=0.352 Sum_probs=171.1 Q ss_pred HHHHHHHCCCCEEE-EEEEEEECCCCCCCC--------CCCCCCCCCCCCC--CCCCCCCCHHHHHHHHHHHHHCCCEEE Q ss_conf 99988862898569-998645307868342--------3212433547775--641000685799999999996498389 Q gi|254780485|r 40 HTVHRKNFEPNHIQ-LSKLLNIKTGGCPEN--------CGYCNQSVHNKSK--LKASKLINVDQVLKEAKNAKENGATRY 108 (328) Q Consensus 40 a~~~r~~~~g~~V~-~~~~in~~TN~C~~~--------C~fCaf~~~~~~~--~~~~~~~~~Eei~~~a~~~~~~G~~~~ 108 (328) T Consensus 6 ~~ylk~~y-G~kV~Ki~~~gGF-~--CPNRDGT~G~GGCtfC~~a~~~~f~~~~~~~~~~~~~~i~~~~~~~~k~G~kkf 81 (307) T TIGR01212 6 GDYLKERY-GEKVFKITLHGGF-S--CPNRDGTIGRGGCTFCNDASKPSFADEVTQARIPIKEQIKKRKKKYKKDGIKKF 81 (307) T ss_pred HHHHHHHH-CCCEEEEEEECCC-C--CCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEE T ss_conf 57999980-8944999864578-8--778887002577252178888852451023544689999999976531573157 Q ss_pred EE--ECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECC----CCCHHH---HHHHHCCCCC-EEEEECCC-CHHHHHCCC Q ss_conf 97--3036888744289999988762136883241025----699999---9987415760-69751343-777732058 Q gi|254780485|r 109 CM--GAAWREPKERDLSIIVDMIKGVKSLGLETCMTLG----MLSFEQ---AQILSKAGLD-YYNHNIDT-SERFYPHVT 177 (328) Q Consensus 109 ~l--~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g----~~~~~~---~~~Lk~aG~~-~~~~~let-~~~~~~~~~ 177 (328) T Consensus 82 ~aYFQ~yTn--TYApve~Lk~~y~~aL~~~~vVGlsvgTRPDC~P~~VLDlL~ey~~~GyevWvELGLQtah~~TL~~IN 159 (307) T TIGR01212 82 IAYFQAYTN--TYAPVEVLKEMYEQALSEDDVVGLSVGTRPDCVPDEVLDLLAEYKERGYEVWVELGLQTAHDRTLKKIN 159 (307) T ss_pred EEEECCCCC--CCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHC T ss_conf 899738876--500268888999987632780577536889877478999999995497589996053565589999851 Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCEEEECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCC------CCC Q ss_conf 888989999999999987985577078668-9899999999999974088886020541120487412445------687 Q gi|254780485|r 178 TTHTFEDRLQTLENVRKSGIKVCCGGILGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEEN------KKV 250 (328) Q Consensus 178 ~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~------~~~ 250 (328) T Consensus 160 RgHd~~~y~~a~~~~~krGikVC~H~I~GLPgE~~~~~~eTak~~~~l~v--dGiKiH~LhvvkGt~m~k~Y~~G~~~~l 237 (307) T TIGR01212 160 RGHDFACYVDAVKRARKRGIKVCSHVILGLPGEDREEMLETAKIVASLDV--DGIKIHPLHVVKGTKMAKQYEKGELKTL 237 (307) T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCC--CEEEEEEEEEEECCHHHHHHHCCCEEEC T ss_conf 43787899999999976598899998742898888899999999983798--8488720178735757887545740104 Q ss_pred CHHHHHHHHH-HHHHHCCCCCCE-EEEH Q ss_conf 9899999999-999968687214-2311 Q gi|254780485|r 251 DPIEHVRIIS-VARILMPKSRLR-LAAG 276 (328) Q Consensus 251 ~~~e~lr~iA-i~RL~lP~~~i~-i~~~ 276 (328) T Consensus 238 ~~e~Y~~~~~d~le~lpP~vv~HRi~~d 265 (307) T TIGR01212 238 SLEEYISLACDFLEHLPPEVVVHRISGD 265 (307) T ss_pred CHHHHHHHHHHHHHCCCCCEEEEEECCC T ss_conf 7677999999998508985599841277 |
This family lacks the GNAT acetyltransferase domain.. |
| >COG1242 Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.6e-12 Score=99.04 Aligned_cols=232 Identities=19% Similarity=0.299 Sum_probs=155.4 Q ss_pred HHHHHHHHHHHHCCCCEEE-EEEEEEECCCCCCC--------CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-C Q ss_conf 9999999988862898569-99864530786834--------232124335477756410006857999999999964-9 Q gi|254780485|r 35 LLFWSHTVHRKNFEPNHIQ-LSKLLNIKTGGCPE--------NCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKEN-G 104 (328) Q Consensus 35 l~~~Aa~~~r~~~~g~~V~-~~~~in~~TN~C~~--------~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~-G 104 (328) T Consensus 7 ~y~t~~~~lr~~f-g~Kv~Kv~ld~GF---~CPNRDGti~rGGCtFC~~~g~~d~~~~~-~~~i~~Q~~~q~~~~~kK~~ 81 (312) T COG1242 7 LYYTLNDYLREKF-GEKVFKVTLDGGF---SCPNRDGTIGRGGCTFCSVAGSGDFAGQP-KISIAEQFKEQAERMHKKWK 81 (312) T ss_pred HHHHHHHHHHHHH-CCEEEEEECCCCC---CCCCCCCCCCCCCEEEECCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHC T ss_conf 7999999999983-8716998535777---89999996267864650677887634586-67789999999999987515 Q ss_pred -CE-EEEEECCCCCCCCCCHHHHHHHHHHHCCC----CCCEEEECCCCCHHHHHHHHCCCCC---EEEEECCC-CHHHHH Q ss_conf -83-89973036888744289999988762136----8832410256999999987415760---69751343-777732 Q gi|254780485|r 105 -AT-RYCMGAAWREPKERDLSIIVDMIKGVKSL----GLETCMTLGMLSFEQAQILSKAGLD---YYNHNIDT-SERFYP 174 (328) Q Consensus 105 -~~-~~~l~~~~~~~~~~~~~~~~e~i~~i~~~----~~~i~~~~g~~~~~~~~~Lk~aG~~---~~~~~let-~~~~~~ 174 (328) T Consensus 82 ~~kyiaYFQ~~TNT--yApvevLre~ye~aL~~~~VVGLsIgTRPDClpd~VldlL~e~~~r~~vWvELGLQT~h~~Tlk 159 (312) T COG1242 82 RGKYIAYFQAYTNT--YAPVEVLREMYEQALSEAGVVGLSIGTRPDCLPDDVLDLLAEYNKRYEVWVELGLQTAHDKTLK 159 (312) T ss_pred CCCEEEEEECCCCC--CCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHEEEEEEECCCHHHHHHHH T ss_conf 78679998146666--6759999999999727588047750589988818999999998644578877453055589999 Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCC------C Q ss_conf 058888989999999999987985577078668-989999999999997408888602054112048741244------5 Q gi|254780485|r 175 HVTTTHTFEDRLQTLENVRKSGIKVCCGGILGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEE------N 247 (328) Q Consensus 175 ~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~------~ 247 (328) T Consensus 160 ~iNRgHd~~~y~dav~r~rkrgIkvc~HiI~GLPgE~~~~mleTak~v~~~~v--~GIKlH~LhvvkgT~m~k~Y~~G~l 237 (312) T COG1242 160 RINRGHDFACYVDAVKRLRKRGIKVCTHLINGLPGETRDEMLETAKIVAELGV--DGIKLHPLHVVKGTPMEKMYEKGRL 237 (312) T ss_pred HHHCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCC--CEEEEEEEEEECCCHHHHHHHCCCC T ss_conf 87624544999999999997497498888407988888999999999986687--5388887888638759999971886 Q ss_pred CCCCHHHHHHHHH-HHHHHCCCCCCE-EEE Q ss_conf 6879899999999-999968687214-231 Q gi|254780485|r 248 KKVDPIEHVRIIS-VARILMPKSRLR-LAA 275 (328) Q Consensus 248 ~~~~~~e~lr~iA-i~RL~lP~~~i~-i~~ 275 (328) T Consensus 238 ~~ls~eeYv~~~~d~le~lpp~vviHRitg 267 (312) T COG1242 238 KFLSLEEYVELVCDQLEHLPPEVVIHRITG 267 (312) T ss_pred EECCHHHHHHHHHHHHHHCCCCEEEEEECC T ss_conf 554599999999999974893269997037 |
|
| >TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase; InterPro: IPR011772 This entry respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.4e-10 Score=86.64 Aligned_cols=209 Identities=17% Similarity=0.230 Sum_probs=141.1 Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEEECCCCCCCC---CCHHHHHHHHHH Q ss_conf 864530786834232124335477756410006857999999999964-9838997303688874---428999998876 Q gi|254780485|r 56 KLLNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKEN-GATRYCMGAAWREPKE---RDLSIIVDMIKG 131 (328) Q Consensus 56 ~~in~~TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~-G~~~~~l~~~~~~~~~---~~~~~~~e~i~~ 131 (328) T Consensus 199 av~~f-aRGCPf~C~fCsQwkFW----rryR~RdPkKfvdEI~~L~r~hgVg-fF~L-ADEePT~Nr~~f~efCEe~Iar 271 (506) T TIGR02026 199 AVPNF-ARGCPFTCNFCSQWKFW----RRYRARDPKKFVDEIEKLVREHGVG-FFIL-ADEEPTVNRKKFQEFCEELIAR 271 (506) T ss_pred EEECC-CCCCCCCCCCCCCCHHH----HHHCCCCCCHHHHHHHHHHHHCCCC-EEEE-CCCCCCCCHHHHHHHHHHHHHC T ss_conf 87316-78697655745752044----5404788613899999998631853-3663-2788730168999999999857 Q ss_pred HCCCCCCEEEECC----CCCHHHHHHHHCCCCCEEEEECCCC-HHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEC Q ss_conf 2136883241025----6999999987415760697513437-7773205888898999999999998798557707866 Q gi|254780485|r 132 VKSLGLETCMTLG----MLSFEQAQILSKAGLDYYNHNIDTS-ERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILG 206 (328) Q Consensus 132 i~~~~~~i~~~~g----~~~~~~~~~Lk~aG~~~~~~~let~-~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G 206 (328) T Consensus 272 ~l~~~v~~ginTRv~Di~RD~~~L~lyR~AGl~~i~LG~Eaaa~~~Ld~~rK~t~~~~nkeAIrLlr~h~i~~~A~fi~g 351 (506) T TIGR02026 272 NLQIKVTWGINTRVTDIVRDADLLKLYRRAGLVHISLGTEAAAQLTLDRFRKETTVSENKEAIRLLRQHNILSEAQFIVG 351 (506) T ss_pred CCCEEEEEEEEECCCHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEEEEEEC T ss_conf 89569999651113042402898888886060300121004665323121366752444899999976184021002425 Q ss_pred C-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCC-----------------------CCCCCHHHHHHHHH-- Q ss_conf 8-989999999999997408888602054112048741244-----------------------56879899999999-- Q gi|254780485|r 207 L-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEE-----------------------NKKVDPIEHVRIIS-- 260 (328) Q Consensus 207 ~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~-----------------------~~~~~~~e~lr~iA-- 260 (328) T Consensus 352 ~e~~~~~~~~etyr~~ldw--~PD~~~w~~yTPwpft~lf~~l~dr~~v~LDy~Kynf~~pi~~p~~m~r~~~l~gV~~~ 429 (506) T TIGR02026 352 LENETDETLEETYRQLLDW--DPDLANWLMYTPWPFTSLFEELSDRVEVQLDYTKYNFVTPILKPTLMPREEILKGVLLN 429 (506) T ss_pred CCCCCHHHHHHHHHHHHCC--CCCHHHHCCCCCCCCHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHH T ss_conf 4358756899999997337--83324214558987636788630756898414201124532366778768999999999 Q ss_pred HHHHHC-CCCCCEE Q ss_conf 999968-6872142 Q gi|254780485|r 261 VARILM-PKSRLRL 273 (328) Q Consensus 261 i~RL~l-P~~~i~i 273 (328) T Consensus 430 y~rfy~rPKAl~~y 443 (506) T TIGR02026 430 YIRFYMRPKALLRY 443 (506) T ss_pred HHHHHCCCHHHHHC T ss_conf 99862251488742 |
This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This entry identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologues of this gene are not found in plants which rely solely on the aerobic cyclase.; GO: 0016709 oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen NADH or NADPH as one donor and incorporation of one atom of oxygen, 0050661 NADP binding, 0015995 chlorophyll biosynthetic process. |
| >COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.1e-09 Score=82.66 Aligned_cols=212 Identities=18% Similarity=0.169 Sum_probs=123.6 Q ss_pred HHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC----CCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCC Q ss_conf 88628985699986453078683423212433547775641----00068579999999999649838997303688874 Q gi|254780485|r 44 RKNFEPNHIQLSKLLNIKTGGCPENCGYCNQSVHNKSKLKA----SKLINVDQVLKEAKNAKENGATRYCMGAAWREPKE 119 (328) Q Consensus 44 r~~~~g~~V~~~~~in~~TN~C~~~C~fCaf~~~~~~~~~~----~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~ 119 (328) T Consensus 22 ~~C~~G~Kl----VlFv-TG~C~~~CfYCPvs~~r~gkdviyaNErpV~~~eDii~ea~~~~a~Gas---i-TGGd-P-l 90 (353) T COG2108 22 RLCVLGGKL----VLFV-TGLCNRSCFYCPVSDERKGKDVIYANERPVKSVEDIIEEAKLMDALGAS---I-TGGD-P-L 90 (353) T ss_pred HHHHCCCCE----EEEE-ECCCCCCCCCCCCCHHHCCCCCEEECCCCCCCHHHHHHHHHHHCCCCCC---C-CCCC-H-H T ss_conf 777258716----9999-5566898525768777648863311563147578899999972466653---3-2787-4-8 Q ss_pred CCHHHHHHHHHHHCCCC---CCEEE--ECCCCCHHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHH Q ss_conf 42899999887621368---83241--02569999999874157606975134377773205888898999999999998 Q gi|254780485|r 120 RDLSIIVDMIKGVKSLG---LETCM--TLGMLSFEQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRK 194 (328) Q Consensus 120 ~~~~~~~e~i~~i~~~~---~~i~~--~~g~~~~~~~~~Lk~aG~~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~ 194 (328) T Consensus 91 ~~ieR~~~~ir~LK~efG~~fHiHLYT~g~~~~~e~l~~L~eAGLDEIRfHp~--------~~~~~~~e~~i~~l~~A~~ 162 (353) T COG2108 91 LEIERTVEYIRLLKDEFGEDFHIHLYTTGILATEEALKALAEAGLDEIRFHPP--------RPGSKSSEKYIENLKIAKK 162 (353) T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHCCCCEEEECCC--------CCCCCCCHHHHHHHHHHHH T ss_conf 99999999999998763532059984066568889999998679875994689--------7211231899999999998 Q ss_pred CCCCCCCEEEECCCCCHH-HHHHHHHHHHHCCCCCCEEECCCEEECCCCC-------C------CCCCCCCHHHHHHHHH Q ss_conf 798557707866898999-9999999997408888602054112048741-------2------4456879899999999 Q gi|254780485|r 195 SGIKVCCGGILGLGEMID-DRIDMLLTLANLSTPPESIPINLLIPIPGSK-------F------EENKKVDPIEHVRIIS 260 (328) Q Consensus 195 ~G~~~~sg~l~G~gEt~e-eri~~l~~lr~l~~~~~~v~~~~~~p~~gt~-------l------~~~~~~~~~e~lr~iA 260 (328) T Consensus 163 ~g~dvG~EiPa--ipg~e~~i~e~~~~~~~~~~--~FlNiNELE~sE~N~~~l~~~gy~~~~~~~~av~GS~E~~Lk~l~ 238 (353) T COG2108 163 YGMDVGVEIPA--IPGEEEAILEFAKALDENGL--DFLNINELEFSENNYENLLERGYKISDDGSSAVAGSLEAALKVLK 238 (353) T ss_pred HCCCCEEECCC--CCCHHHHHHHHHHHHHHCCC--CEEEEEEEEECCCHHHHHHHCCCEECCCCCCCCCCHHHHHHHHHH T ss_conf 28551043278--86568899999999876066--534210044052119999866761326875543445899999999 Q ss_pred HHHHHCCCCCCEEEEHHHH Q ss_conf 9999686872142311565 Q gi|254780485|r 261 VARILMPKSRLRLAAGRAM 279 (328) Q Consensus 261 i~RL~lP~~~i~i~~~~~~ 279 (328) T Consensus 239 ~~~~~-~~l~vH~Css~~K 256 (353) T COG2108 239 WAEEN-WDLTVHYCSSKFK 256 (353) T ss_pred HHHCC-CCCEEEECCHHHH T ss_conf 87515-6754897735666 |
|
| >TIGR01211 ELP3 histone acetyltransferase, ELP3 family; InterPro: IPR005910 Histone acetylation is carried out by a class of enzymes known as histone acetyltransferases (HATs), which catalyse the transfer of an acetyl group from acetyl-CoA to the lysine E-amino groups on the N-terminal tails of histones | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00019 Score=49.46 Aligned_cols=262 Identities=18% Similarity=0.267 Sum_probs=163.2 Q ss_pred HHHCCCCCCCCHHHHHHHH----------C-CC-HHHHHHHHHHHHHHHCCC----CEE-EEEE--EEEECCC--CCC-C Q ss_conf 4200234478999999997----------3-99-189999999998886289----856-9998--6453078--683-4 Q gi|254780485|r 10 ENPTKKPKVWTSKEVFQIY----------N-MP-FNDLLFWSHTVHRKNFEP----NHI-QLSK--LLNIKTG--GCP-E 67 (328) Q Consensus 10 ~~~~~~~e~ls~eea~~L~----------~-~~-~~el~~~Aa~~~r~~~~g----~~V-~~~~--~in~~TN--~C~-~ 67 (328) T Consensus 3 ~~~~~sG~~~~k~~le~~K~~~~r~y~L~~G~Ps~seIL~~a~~~~~~~l~~~Lr~KPvRTiSGVAVVAvMTsP~~CPHG 82 (573) T TIGR01211 3 VDKLLSGKVRDKEDLEDLKLEVSRKYGLSKGVPSNSEILNSAPDEEKKKLEDILRKKPVRTISGVAVVAVMTSPERCPHG 82 (573) T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCEEECCCCCEEEECCCCCCCCC T ss_conf 01122256568888999999999875678898865899962480036788877516996011575200122621688885 Q ss_pred C-----CCCCCCCCC---CCCCCC------------CCCCCCHHHHHHHHHHHHHCCCE----EEEEECCCCCCCCCCHH Q ss_conf 2-----321243354---777564------------10006857999999999964983----89973036888744289 Q gi|254780485|r 68 N-----CGYCNQSVH---NKSKLK------------ASKLINVDQVLKEAKNAKENGAT----RYCMGAAWREPKERDLS 123 (328) Q Consensus 68 ~-----C~fCaf~~~---~~~~~~------------~~~~~~~Eei~~~a~~~~~~G~~----~~~l~~~~~~~~~~~~~ 123 (328) T Consensus 83 kytGniC~yCPGG~~s~f~~spQSYTG~EPAA~Rg~~~~YDPY~q~~~Rl~QL~~iGHpvdKVElI~MGGTFp--Ard~~ 160 (573) T TIGR01211 83 KYTGNICLYCPGGPDSDFENSPQSYTGYEPAALRGRQYDYDPYEQVTARLEQLEQIGHPVDKVELIIMGGTFP--ARDLD 160 (573) T ss_pred CCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC--CCCHH T ss_conf 4217876426878866667884875567658999765078856999999999987189816178883078777--88876 Q ss_pred HH----HHHHHHHCCCC-------------------------------------------------------CC--EEEE Q ss_conf 99----99887621368-------------------------------------------------------83--2410 Q gi|254780485|r 124 II----VDMIKGVKSLG-------------------------------------------------------LE--TCMT 142 (328) Q Consensus 124 ~~----~e~i~~i~~~~-------------------------------------------------------~~--i~~~ 142 (328) T Consensus 161 Yqe~Fv~~~l~Aln~F~yfkd~Dnleeklvr~~~~g~~~~~~e~~~fkraWert~~~~y~~LE~a~r~NE~~~~RcVG~T 240 (573) T TIGR01211 161 YQEWFVKRCLNALNDFDYFKDIDNLEEKLVRAELKGNSTEVKEDDEFKRAWERTAEKDYVYLEEAIRKNETSKVRCVGLT 240 (573) T ss_pred HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCCCCEEEEE T ss_conf 77899999997316665346712467788763057654433688732346655304772136889962467686434677 Q ss_pred ----CCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECC-CCCHHHHHH Q ss_conf ----25699999998741576069751343-777732058888989999999999987985577078668-989999999 Q gi|254780485|r 143 ----LGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGL-GEMIDDRID 216 (328) Q Consensus 143 ----~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~-gEt~eeri~ 216 (328) T Consensus 241 ~ETRPDyc~e~~id~ML~~G~TrVElGVQtiy~~i~~~~kRGH~V~~~~~at~llrDaG~KV~yH~MPGlPGs~fErDl~ 320 (573) T TIGR01211 241 IETRPDYCREEEIDRMLKLGATRVELGVQTIYNDILERIKRGHTVRDVVEATRLLRDAGLKVVYHIMPGLPGSSFERDLK 320 (573) T ss_pred ECCCCCCCCHHHHHHHHHCCCCEEEEEEECCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHH T ss_conf 21588988868899998359848997520726899998378985899999987766504622031175333566356899 Q ss_pred HHHHHHHC-CCCCCEEECCCEEECCCCCCCC------CCCCCHHHHHHHHHHHHHHCCCCCCEEE Q ss_conf 99999740-8888602054112048741244------5687989999999999996868721423 Q gi|254780485|r 217 MLLTLANL-STPPESIPINLLIPIPGSKFEE------NKKVDPIEHVRIISVARILMPKSRLRLA 274 (328) Q Consensus 217 ~l~~lr~l-~~~~~~v~~~~~~p~~gt~l~~------~~~~~~~e~lr~iAi~RL~lP~~~i~i~ 274 (328) T Consensus 321 ~Fr~~Fedp~FkPDmLKIYPTLV~rGT~LY~lWk~G~Y~PY~~eEaveLiv~~~~~~P~W-vR~~ 384 (573) T TIGR01211 321 MFREIFEDPRFKPDMLKIYPTLVTRGTELYELWKRGEYKPYTTEEAVELIVEIKKIMPKW-VRIQ 384 (573) T ss_pred HHHHHHCCCCCCCCCEEECCEEEECCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCC-EEEE T ss_conf 998862687989786156671023476116888678998776789999999999738973-5775 |
Early indication that HATs were involved in transcription came from the observation that in actively transcribed regions of chromatin, histones tend to be hyperacetylated, whereas in transcriptionally silent regions histones are hypoacetylated. The histone acetyltransferases are divided into five families. These include the Gcn5-related acetyltransferases (GNATs); the MYST (for 'MOZ, Ybf2/Sas3, Sas2 and Tip60)-related HATs; p300/CBP HATs; the general transcription factor HATs, which include the TFIID subunit TAF250; and the nuclear hormone-related HATs SRC1 and ACTR (SRC3). The GCN5-related N-acetyltransferase superfamily includes such enzymes as the histone acetyltransferases GCN5 and Hat1, the elongator complex subunit Elp3, the mediator-complex subunit Nut1, and Hpa2 . Many GNATs share several functional domains, including an N-terminal region of variable length, an acetyltransferase domain that encompasses the conserved sequence motifs described above, a region that interacts with the coactivator Ada2, and a C-terminal bromodomain that is believed to interact with acetyl-lysine residues. Members of the GNAT family are important for the regulation of cell growth and development. In mice, knockouts of Gcn5L are embryonic lethal. Yeast Gcn5 is needed for normal progression through the G2M boundary and mitotic gene expression. The importance of GNATs is probably related to their role in transcription and DNA repair. The yeast GCN5 (yGCN5) transcriptional coactivator functions as a histone acetyltransferase (HAT) to promote transcriptional activation. The crystal structure of the yeast histone acetyltransferase Hat1-acetyl coenzyme A (AcCoA) shows that Hat1 has an elongated, curved structure, and the AcCoA molecule is bound in a cleft on the concave surface of the protein, marking the active site of the enzyme. A channel of variable width and depth that runs across the protein is probably the binding site for the histone substrate . The central protein core associated with AcCoA binding that appears to be structurally conserved among a superfamily of N-acetyltransferases, including yeast histone acetyltransferase 1 and Serratia marcescens aminoglycoside 3-N-acetyltransferase . The Saccharomyces cerevisiae member YPL086C has been characterised in vitro as an N-terminal acetyltransferase (2.3.1.48 from EC) for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases. In vivo, ELP3 gene deletion confers typical ELP phenotypes such as slow growth adaptation, slow gene activation, and temperature sensitivity. This suggests a role for the proteins as novel, tightly RNAPII-associated histone acetyltransferases in transcription of DNA packaged in chromatin .. |
| >PRK05481 lipoyl synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.4e-19 Score=146.05 Aligned_cols=186 Identities=20% Similarity=0.350 Sum_probs=146.9 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCC-CCCCHHHHHHHHHHHCCCCCCEE Q ss_conf 78683423212433547775641000685799999999996498389973036888-74428999998876213688324 Q gi|254780485|r 62 TGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREP-KERDLSIIVDMIKGVKSLGLETC 140 (328) Q Consensus 62 TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~-~~~~~~~~~e~i~~i~~~~~~i~ 140 (328) T Consensus 59 G~~CTR~C~FC~V~tG~----P~--~~D~~EP~~vA~av~~m~Lk~vViTSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~ 132 (289) T PRK05481 59 GDICTRRCPFCDVATGR----PL--PLDPDEPERVAEAVARMGLKYVVITSVDRDDLPDGGAQHFAETIRAIRELSPGTT 132 (289) T ss_pred CCCCCCCCCCCCCCCCC----CC--CCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCE T ss_conf 78765788774078899----89--8870307999999998289769996341666656554999999999985599977 Q ss_pred EECCC---C-CHH-HHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHC--CCCCCCEEEECCCCCHHH Q ss_conf 10256---9-999-9998741576069751343777732058888989999999999987--985577078668989999 Q gi|254780485|r 141 MTLGM---L-SFE-QAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKS--GIKVCCGGILGLGEMIDD 213 (328) Q Consensus 141 ~~~g~---~-~~~-~~~~Lk~aG~~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~--G~~~~sg~l~G~gEt~ee 213 (328) T Consensus 133 iEvLiPDF~G~~~~~l~~v~~a~PdV~nHNiETV~rL~~~VRp~a~Y~rSL~vL~~~k~~~p~~~TKSgiMvGLGEt~eE 212 (289) T PRK05481 133 IEVLIPDFRGRKDAALEIVVAAPPDVFNHNLETVPRLYKRVRPGADYERSLELLKRAKELDPGIPTKSGLMVGLGETDEE 212 (289) T ss_pred EEECCCCCCCCHHHHHHHHHHCCHHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHH T ss_conf 99707211469999999998567177643513104436233882338999999999997489982413567755788999 Q ss_pred HHHHHHHHHHCCCCCCEEECC-CEEECCCCCCCCCCCCCHHHHH Q ss_conf 999999997408888602054-1120487412445687989999 Q gi|254780485|r 214 RIDMLLTLANLSTPPESIPIN-LLIPIPGSKFEENKKVDPIEHV 256 (328) Q Consensus 214 ri~~l~~lr~l~~~~~~v~~~-~~~p~~gt~l~~~~~~~~~e~l 256 (328) T Consensus 213 v~~~~~DL~~~gv--dilTiGQYL~Ps~~-hlpV~ryv~P~eF~ 253 (289) T PRK05481 213 VLEVMDDLRAHGV--DILTIGQYLQPSRK-HLPVERYVTPEEFD 253 (289) T ss_pred HHHHHHHHHHCCC--CEEEECCCCCCCCC-CCCCEECCCHHHHH T ss_conf 9999999998199--89983403588866-68843356989999 |
|
| >COG0320 LipA Lipoate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.6e-19 Score=145.61 Aligned_cols=188 Identities=23% Similarity=0.402 Sum_probs=150.0 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCC-CCCCHHHHHHHHHHHCCCCCCEE Q ss_conf 78683423212433547775641000685799999999996498389973036888-74428999998876213688324 Q gi|254780485|r 62 TGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREP-KERDLSIIVDMIKGVKSLGLETC 140 (328) Q Consensus 62 TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~-~~~~~~~~~e~i~~i~~~~~~i~ 140 (328) T Consensus 77 G~~CTR~C~FC~V~~g~----P--~~lD~~EP~rvAeaV~~mgLkyVViTsVdRDDL~DGGA~hfa~~i~~Ir~~~P~t~ 150 (306) T COG0320 77 GDICTRRCRFCDVKTGR----P--NPLDPDEPERVAEAVKDMGLKYVVITSVDRDDLPDGGAQHFAECIRAIRELNPQTT 150 (306) T ss_pred CCHHCCCCCCCCCCCCC----C--CCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCE T ss_conf 51322678853147899----9--99997427899999998389869997531566656456899999999996399964 Q ss_pred EEC----CCCCHHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCC--CCCCCEEEECCCCCHHHH Q ss_conf 102----56999999987415760697513437777320588889899999999999879--855770786689899999 Q gi|254780485|r 141 MTL----GMLSFEQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSG--IKVCCGGILGLGEMIDDR 214 (328) Q Consensus 141 ~~~----g~~~~~~~~~Lk~aG~~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G--~~~~sg~l~G~gEt~eer 214 (328) T Consensus 151 iEvL~PDF~G~~~al~~v~~~~pdV~nHNvETVprL~~~VRp~A~Y~~SL~~L~~~k~~~P~i~TKSgiMlGLGEt~~Ev 230 (306) T COG0320 151 IEVLTPDFRGNDDALEIVADAGPDVFNHNVETVPRLYPRVRPGATYERSLSLLERAKELGPDIPTKSGLMVGLGETDEEV 230 (306) T ss_pred EEEECCCCCCCHHHHHHHHHCCCCHHHCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHH T ss_conf 89838654678999999983696110045200001142568987688899999999985898631121355057768999 Q ss_pred HHHHHHHHHCCCCCCEEECC-CEEECCCCCCCCCCCCCHHHHHHH Q ss_conf 99999997408888602054-112048741244568798999999 Q gi|254780485|r 215 IDMLLTLANLSTPPESIPIN-LLIPIPGSKFEENKKVDPIEHVRI 258 (328) Q Consensus 215 i~~l~~lr~l~~~~~~v~~~-~~~p~~gt~l~~~~~~~~~e~lr~ 258 (328) T Consensus 231 ~e~m~DLr~~gv--dilTiGQYlqPS~~-HlpV~ryv~PeeF~~~ 272 (306) T COG0320 231 IEVMDDLRSAGV--DILTIGQYLQPSRK-HLPVQRYVTPEEFDEL 272 (306) T ss_pred HHHHHHHHHCCC--CEEEECCCCCCCCC-CCCCEECCCHHHHHHH T ss_conf 999999998599--89973001477624-5883321188999999 |
|
| >cd01335 Radical_SAM Radical SAM superfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-18 Score=144.08 Aligned_cols=198 Identities=22% Similarity=0.408 Sum_probs=146.5 Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCH-HHHHHHHHHHCCCC Q ss_conf 45307868342321243354777564100068579999999999649838997303688874428-99999887621368 Q gi|254780485|r 58 LNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDL-SIIVDMIKGVKSLG 136 (328) Q Consensus 58 in~~TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~-~~~~e~i~~i~~~~ 136 (328) T Consensus 1 i~~-srGC~~~C~fC~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~l~~~~~~~~~~~ 76 (204) T cd01335 1 LEL-TRGCNLNCGFCSNPASKGRG--PESPPEIEEILDIVLEAKERGVEVVILTGG-EPLLYPELAELLRRLKKELPGFE 76 (204) T ss_pred CCC-CCCCCCCCCCCCCCCCCCCC--CCCCCCHHHHHHHHHHHHHCCCEEEEEECC-CCCCCCCCCHHHHHHHHCCCCCE T ss_conf 921-63738569879987547987--566788999999999998759869997246-76666532101354553068717 Q ss_pred CCEEEECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCC-CCCCHHHHHHHHHHHHHCCCCCCCEEEECC-CCCHHH Q ss_conf 83241025699999998741576069751343-777732058-888989999999999987985577078668-989999 Q gi|254780485|r 137 LETCMTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVT-TTHTFEDRLQTLENVRKSGIKVCCGGILGL-GEMIDD 213 (328) Q Consensus 137 ~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~-~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~-gEt~ee 213 (328) T Consensus 77 i~~~t~~~~~~~~~l~~l~~~g~~~~~i~les~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~G~p~et~~~ 156 (204) T cd01335 77 ISIETNGTLLTEELLKELKELGLDGVGVSLDSGDEEVADKIRGSGESFKERLEALKELREAGLGLSTTLLVGLGDEDEED 156 (204) T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHH T ss_conf 99983365476999877540375422224356899999998488997599999999998679989999998279999999 Q ss_pred HHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCC-CHHHHHHHHH Q ss_conf 9999999974088886020541120487412445687-9899999999 Q gi|254780485|r 214 RIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKV-DPIEHVRIIS 260 (328) Q Consensus 214 ri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~-~~~e~lr~iA 260 (328) T Consensus 157 ~~~~~~~~~~~~~-~~~~~~~~~~p~~gt~~~~~~~~~~~~~~~~~~~ 203 (204) T cd01335 157 DLEELELLAEFRS-PDRVSLFRLLPEEGTPLELAAPVVPAEKLLRLIA 203 (204) T ss_pred HHHHHHHHHHHCC-CCEEEEEEEECCCCCCHHHCCCCCCHHHHHHHHH T ss_conf 9999999985189-9889898766228980333879799999999861 |
Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o |
| >smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-18 Score=144.93 Aligned_cols=186 Identities=26% Similarity=0.425 Sum_probs=140.9 Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE-----EEECCCCCCC-CCCHHHHHHHHH Q ss_conf 6453078683423212433547775641000685799999999996498389-----9730368887-442899999887 Q gi|254780485|r 57 LLNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRY-----CMGAAWREPK-ERDLSIIVDMIK 130 (328) Q Consensus 57 ~in~~TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~-----~l~~~~~~~~-~~~~~~~~e~i~ 130 (328) T Consensus 4 ~~~~-sRGC~~~C~fC~~~~~~~----~~~~~~~~~i~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 78 (216) T smart00729 4 LYII-TRGCPRRCTFCSFPSARG----KLRSRYLEALVREIELLAEKGEKEILVGTVFIGGGTPTLLSPEQLEELLEAIR 78 (216) T ss_pred EEEE-ECCCCCCCCCCCCCCCCC----CCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHH T ss_conf 9999-878198484298175889----64575999999999999970897653001100246898889999999999999 Q ss_pred HHCCC----CCCEEEECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCC-CCCCCEEE Q ss_conf 62136----883241025699999998741576069751343-7777320588889899999999999879-85577078 Q gi|254780485|r 131 GVKSL----GLETCMTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSG-IKVCCGGI 204 (328) Q Consensus 131 ~i~~~----~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G-~~~~sg~l 204 (328) T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~g~~~v~~giEs~~~~~l~~i~k~~~~~~~~~~i~~~~~~g~~~~~~~~i 158 (216) T smart00729 79 EILGLADDVEITIETRPGTLTEELLEALKEAGVNRVSLGVQSGSDEVLKAINRGHTVEDVLEAVEKLREAGPIKVSTDLI 158 (216) T ss_pred HHCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEEEEE T ss_conf 85143562699997060215899999999849986666735507899987179999999999999999858936877578 Q ss_pred ECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCC Q ss_conf 668-989999999999997408888602054112048741244568 Q gi|254780485|r 205 LGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKK 249 (328) Q Consensus 205 ~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~ 249 (328) T Consensus 159 ~GlP~et~e~~~~t~~~~~~~~~--~~i~~~~~~p~pgT~~~~~~~ 202 (216) T smart00729 159 VGLPGETEEDFEETLKLLKELGP--DRVSIFPLSPRPGTPLAKLYK 202 (216) T ss_pred ECCCCCCHHHHHHHHHHHHHCCC--CEEEEECCEECCCCHHHHCCC T ss_conf 67999999999999999994691--989987487569984665016 |
This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases. |
| >PRK12928 lipoyl synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.2e-18 Score=142.92 Aligned_cols=190 Identities=20% Similarity=0.307 Sum_probs=148.3 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCC-CCCCHHHHHHHHHHHCCCCCCEE Q ss_conf 78683423212433547775641000685799999999996498389973036888-74428999998876213688324 Q gi|254780485|r 62 TGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREP-KERDLSIIVDMIKGVKSLGLETC 140 (328) Q Consensus 62 TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~-~~~~~~~~~e~i~~i~~~~~~i~ 140 (328) T Consensus 67 Gd~CTR~C~FC~V~tg~----P--~~lD~~EP~rvA~av~~m~LkyvVITSV~RDDL~DgGA~hfa~~I~~Ir~~~P~~~ 140 (290) T PRK12928 67 GSICTRRCAFCQVAKGR----P--MPLDPDEPERVAEAVAALGLRYVVLTSVARDDLPDGGAAHFVATIAAIRARNPGTG 140 (290) T ss_pred CCCCCCCCCCCCCCCCC----C--CCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCE T ss_conf 78635489851553799----8--98980347999999998389768984123678866452999999999984599867 Q ss_pred EECCCC----CHH-HHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHC--CCCCCCEEEECCCCCHHH Q ss_conf 102569----999-9998741576069751343777732058888989999999999987--985577078668989999 Q gi|254780485|r 141 MTLGML----SFE-QAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKS--GIKVCCGGILGLGEMIDD 213 (328) Q Consensus 141 ~~~g~~----~~~-~~~~Lk~aG~~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~--G~~~~sg~l~G~gEt~ee 213 (328) T Consensus 141 iEvLiPDF~G~~~~al~~v~~a~pdV~nHNiETV~rL~~~VRp~A~Y~rSL~vL~~ak~~~~~i~TKSgiMvGLGEt~eE 220 (290) T PRK12928 141 IEVLTPDFWGGVARALATVLAAKPDCFNHNLETVPRLQKAVRRGADYQRSLDLLARAKELAPGIPTKSGLMLGLGETEDE 220 (290) T ss_pred EEEECHHHCCCHHHHHHHHHHCCCHHHHCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCHHH T ss_conf 99707111368789999998468546545501204317124885508999999999997388852413458860588999 Q ss_pred HHHHHHHHHHCCCCCCEEECC-CEEECCCCCCCCCCCCCHHHH--HHHHH Q ss_conf 999999997408888602054-112048741244568798999--99999 Q gi|254780485|r 214 RIDMLLTLANLSTPPESIPIN-LLIPIPGSKFEENKKVDPIEH--VRIIS 260 (328) Q Consensus 214 ri~~l~~lr~l~~~~~~v~~~-~~~p~~gt~l~~~~~~~~~e~--lr~iA 260 (328) T Consensus 221 v~~~~~DLr~~gv--dilTiGQYL~Ps~~-h~pV~ryv~P~eF~~~~~~a 267 (290) T PRK12928 221 VIETLRDLRAVDC--DRLTIGQYLRPSLA-HLPVQRYWTPEEFEALGQIA 267 (290) T ss_pred HHHHHHHHHHCCC--CEEEECCCCCCCCC-CCCCEECCCHHHHHHHHHHH T ss_conf 9999999998199--89982402588866-68833356989999999999 |
|
| >TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-17 Score=137.38 Aligned_cols=178 Identities=20% Similarity=0.322 Sum_probs=141.6 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC--CCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCE Q ss_conf 786834232124335477756410006857999999999964--983899730368887442899999887621368832 Q gi|254780485|r 62 TGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKEN--GATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLET 139 (328) Q Consensus 62 TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~--G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i 139 (328) T Consensus 203 SRGCP~~C~FC~~p~~~--~Gr~~R~RSpe~VvdEIe~l~~~y~gv~~~~f~DD~---Ft~~~~r~~eic~~i~~l~i~W 277 (472) T TIGR03471 203 GRGCPSKCTFCLWPQTV--GGHRYRTRSAESVIEEVKYALENFPEVREFFFDDDT---FTDDKPRAEEIARKLGPLGVTW 277 (472) T ss_pred CCCCCCCCCCCCCCCCC--CCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCC---CCCCHHHHHHHHHHHHHCCCEE T ss_conf 79988779687882102--688662159999999999999866897589994776---6789999999999998769827 Q ss_pred EEEC-CCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECC-CCCHHHHHH Q ss_conf 4102-5699999998741576069751343-777732058888989999999999987985577078668-989999999 Q gi|254780485|r 140 CMTL-GMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGL-GEMIDDRID 216 (328) Q Consensus 140 ~~~~-g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~-gEt~eeri~ 216 (328) T Consensus 278 ~~~~Rv~~d~E~l~~mk~AGc~~v~~GiESgsq~iL~~i~K~~t~e~~~~av~~~k~~GI~v~~~FIiG~PgET~Eti~~ 357 (472) T TIGR03471 278 SCNARANVDYETLKVMKENGLRLLLVGYESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRK 357 (472) T ss_pred EEEEECCCCHHHHHHHHHHCCEEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHH T ss_conf 87630348999999999839848998037589999998538998999999999887579879999987799998899999 Q ss_pred HHHHHHHCCCCCCEEECCCEEECCCCCCCC Q ss_conf 999997408888602054112048741244 Q gi|254780485|r 217 MLLTLANLSTPPESIPINLLIPIPGSKFEE 246 (328) Q Consensus 217 ~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~ 246 (328) T Consensus 358 Ti~fa~~l~~--d~~~~si~tPyPGT~ly~ 385 (472) T TIGR03471 358 TIDFAKELNP--HTIQVSLAAPYPGTELYD 385 (472) T ss_pred HHHHHHHCCC--CEEEEEEECCCCCCHHHH T ss_conf 9999997598--908998725889969999 |
One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift. |
| >TIGR02666 moaA molybdenum cofactor biosynthesis protein A; InterPro: IPR013483 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cisdithiolene moiety to molybdopterin (MPT) | Back alignment and domain information |
|---|
Probab=99.73 E-value=3e-15 Score=121.89 Aligned_cols=210 Identities=17% Similarity=0.209 Sum_probs=158.1 Q ss_pred CCCEEEEEEEEEECCCCCCCCCCCCCCCCC---CCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHH Q ss_conf 898569998645307868342321243354---77756410006857999999999964983899730368887442899 Q gi|254780485|r 48 EPNHIQLSKLLNIKTGGCPENCGYCNQSVH---NKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSI 124 (328) Q Consensus 48 ~g~~V~~~~~in~~TN~C~~~C~fCaf~~~---~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~ 124 (328) T Consensus 5 fGR~~~YLR-iSv-TDRCNlRC~YCMP~~~FG~~~~f~~~~~~Lt~eEi~rl~~~~v~~Gv~KvRl-TGGEPLlR~~l~~ 81 (346) T TIGR02666 5 FGRRIDYLR-ISV-TDRCNLRCVYCMPEEGFGEGLDFLPKEELLTFEEIERLVRAFVGLGVRKVRL-TGGEPLLRKDLVE 81 (346) T ss_pred CCCEEEEEE-EEE-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE-ECCCCCCCCCHHH T ss_conf 677323577-876-1647872466688656788766787556689899999999999749716875-2777441367589 Q ss_pred HHHHHHHHCCCC-CCEE-EECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCC-CCCHHHHHHHHHHHHHCCCC-C Q ss_conf 999887621368-8324-1025699999998741576069751343-7777320588-88989999999999987985-5 Q gi|254780485|r 125 IVDMIKGVKSLG-LETC-MTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTT-THTFEDRLQTLENVRKSGIK-V 199 (328) Q Consensus 125 ~~e~i~~i~~~~-~~i~-~~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~-~~~~~~~l~~~~~a~~~G~~-~ 199 (328) T Consensus 82 lv~~~~~~~g~~~~di~lTTNG~~L~~~a~~L~eAGL~rvNvSLDsLd~~~F~~It~~~~~l~~Vl~Gi~aA~~~Gl~~v 161 (346) T TIGR02666 82 LVARLAALPGIEIEDIALTTNGLLLERHAKDLKEAGLKRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAALEAGLKPV 161 (346) T ss_pred HHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCE T ss_conf 99999842785433554100522358899999971888036540148889999985789988899999999996599831 Q ss_pred CCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCC-CC-CCCCCCCHHHHHHHHHHHH Q ss_conf 7707866898999999999999740888860205411204874-12-4456879899999999999 Q gi|254780485|r 200 CCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGS-KF-EENKKVDPIEHVRIISVAR 263 (328) Q Consensus 200 ~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt-~l-~~~~~~~~~e~lr~iAi~R 263 (328) T Consensus 162 KlN~V~~~G~Nd~Ei~~l~~~~~~~~~~lRFIE~MP~---G~~~~~~~~~~~~~~~~~l~~~~~~~ 224 (346) T TIGR02666 162 KLNTVVLRGVNDDEIVDLAEFAKERGVTLRFIELMPL---GEGGNGWRGKEFVSADEILERLEQAF 224 (346) T ss_pred EEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEECCC---CCCCCCCCCCCCCCHHHHHHHHHHHC T ss_conf 4766762788977899999999757960788751546---76300000034535899999999743 |
MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism , . In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which coverts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner . MoCF is the active co-factor in eukaryotic and some prokaryotic molybdoenzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdoenzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF . Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 ( |
| >PRK13361 molybdenum cofactor biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.7e-15 Score=119.53 Aligned_cols=204 Identities=17% Similarity=0.235 Sum_probs=147.3 Q ss_pred CCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHH Q ss_conf 89856999864530786834232124335477756410006857999999999964983899730368887442899999 Q gi|254780485|r 48 EPNHIQLSKLLNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVD 127 (328) Q Consensus 48 ~g~~V~~~~~in~~TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e 127 (328) T Consensus 9 ~gR~i~yLR-iSv-TdrCN~rC~YCmpe-g-~~~~~~~~~Ls~eEi~~l~~~~~~~Gi~kvRl-TGGEPLlR~dl~~li~ 83 (329) T PRK13361 9 FGRTVTYLR-LSV-TDRCDFRCVYCMSE-D-PCFLPRDQVLTLEELAWLAQAFTELGVRKIRL-TGGEPLVRTGCDQLVA 83 (329) T ss_pred CCCCCCCEE-EEE-ECCCCCCCCCCCCC-C-CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE-ECCCCCCCCCHHHHHH T ss_conf 899048667-885-24405838787998-9-98787024689999999999999729528996-2788223568899999 Q ss_pred HHHHHCCCC-CCEEEECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCCC-CCCCEEE Q ss_conf 887621368-83241025699999998741576069751343-77773205888898999999999998798-5577078 Q gi|254780485|r 128 MIKGVKSLG-LETCMTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSGI-KVCCGGI 204 (328) Q Consensus 128 ~i~~i~~~~-~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G~-~~~sg~l 204 (328) T Consensus 84 ~l~~~~gi~~islT-TNG~lL~~~a~~Lk~aGL~rvNISLDsLd~~~f~~ITr~~~l~~Vl~gI~aA~~~G~~~VKiN~V 162 (329) T PRK13361 84 RLGKLPGLEELSMT-TNGSRLARFAAELADAGLKRLNISLDTLNPDLFAALTRNGRLERVIAGIDAAKAAGFERIKLNAV 162 (329) T ss_pred HHHHCCCCCEEEEE-CCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEEEE T ss_conf 98617997718996-64776899999999779986997357799999997728997699999999999779973889999 Q ss_pred ECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCC-CCCCCCCCCCHHHHHHHHH Q ss_conf 6689899999999999974088886020541120487-4124456879899999999 Q gi|254780485|r 205 LGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPG-SKFEENKKVDPIEHVRIIS 260 (328) Q Consensus 205 ~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~g-t~l~~~~~~~~~e~lr~iA 260 (328) T Consensus 163 ~lrg~NddEi~~l~~~~~~~~~~vRFIE---~MP~g~~~~~~~~~~~~~~ei~~~i~ 216 (329) T PRK13361 163 ILRGQNDDEVLDLVEFCRERGLDIAFIE---EMPLGEIDERKRARHCSSDEVRAIIE 216 (329) T ss_pred EECCCCHHHHHHHHHHHHHCCCCEEEEE---EEECCCCCCCHHCCCCCHHHHHHHHH T ss_conf 8368788899999999974898369887---43268755400026567999999998 |
|
| >PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-14 Score=117.50 Aligned_cols=209 Identities=18% Similarity=0.271 Sum_probs=148.6 Q ss_pred HHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCH Q ss_conf 88628985699986453078683423212433547-77564100068579999999999649838997303688874428 Q gi|254780485|r 44 RKNFEPNHIQLSKLLNIKTGGCPENCGYCNQSVHN-KSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDL 122 (328) Q Consensus 44 r~~~~g~~V~~~~~in~~TN~C~~~C~fCaf~~~~-~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~ 122 (328) T Consensus 9 ~D~f-GR~i~yLR-iSv-TdrCN~rC~YCmpe~~~~~~~~~~~~~Ls~eEi~~i~~~~~~lGi~kiRl-TGGEPLlR~di 84 (334) T PRK00164 9 IDRF-GRKVTYLR-LSV-TDRCNFRCTYCMPEGYFGLTFLPKEELLSLEEIERLVRAFAALGVRKIRL-TGGEPLLRKDL 84 (334) T ss_pred CCCC-CCCCCCEE-EEE-ECCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCEEEE-CCCCCCCCCCH T ss_conf 1688-99348667-885-04404738778997777878887342299999999999999709627986-07884323578 Q ss_pred HHHHHHHHHHCCCC-CCEEEECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCCC-CC Q ss_conf 99999887621368-83241025699999998741576069751343-77773205888898999999999998798-55 Q gi|254780485|r 123 SIIVDMIKGVKSLG-LETCMTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSGI-KV 199 (328) Q Consensus 123 ~~~~e~i~~i~~~~-~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G~-~~ 199 (328) T Consensus 85 ~~li~~l~~~~gi~~v~l-TTNG~lL~~~a~~Lk~aGL~riNISLDsLd~~~f~~IT~~~~l~~Vl~gI~~A~~~G~~~v 163 (334) T PRK00164 85 EDIIARLAALPGIRDLAL-TTNGYLLARRAAALKDAGLTRVNVSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLEPV 163 (334) T ss_pred HHHHHHHHHCCCCCCEEE-ECCHHHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCE T ss_conf 999999863279751788-4448899999999998599869971131899999998489975999999999995898761 Q ss_pred CCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECC-CCCCCCCCCCCHHHHHHHHH Q ss_conf 77078668989999999999997408888602054112048-74124456879899999999 Q gi|254780485|r 200 CCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIP-GSKFEENKKVDPIEHVRIIS 260 (328) Q Consensus 200 ~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~-gt~l~~~~~~~~~e~lr~iA 260 (328) T Consensus 164 KiN~V~~~g~N~dEi~~li~~~~~~~i~vRFIE---~Mp~g~~~~~~~~~~~~~~~i~~~l~ 222 (334) T PRK00164 164 KVNAVLMKGVNDDEIPDLLRWAKDRGIQLRFIE---LMPTGEGNEWFRDHHLSGAEIRARLA 222 (334) T ss_pred EEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEE---EECCCCCCCHHHCCCCCHHHHHHHHH T ss_conf 689996379898999999999964696599999---82167776435306548999999998 |
|
| >PRK08208 coproporphyrinogen III oxidase; Validated | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-13 Score=111.43 Aligned_cols=210 Identities=13% Similarity=0.178 Sum_probs=149.6 Q ss_pred HCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCC---CCCCCCCCHHHHHHHHHHHH----HCCCEEEEEECCCCCCC Q ss_conf 628985699986453078683423212433547775---64100068579999999999----64983899730368887 Q gi|254780485|r 46 NFEPNHIQLSKLLNIKTGGCPENCGYCNQSVHNKSK---LKASKLINVDQVLKEAKNAK----ENGATRYCMGAAWREPK 118 (328) Q Consensus 46 ~~~g~~V~~~~~in~~TN~C~~~C~fCaf~~~~~~~---~~~~~~~~~Eei~~~a~~~~----~~G~~~~~l~~~~~~~~ 118 (328) T Consensus 40 ~~~~~~LsLYiHiP----FC~~~C~YC~f~~~~~~~~~~~~~Y----~~aL~~Ei~~~~~~~~~~~~~tiy~--GGGTPS 109 (436) T PRK08208 40 REYEDALHLYIHIP----FCESRCGFCNLFTCTGADNEFIDSY----LDALIRQARQVALALGGVHFASFAV--GGGTPT 109 (436) T ss_pred CCCCCCEEEEEECC----CCCCCCCCCCCCCCCCCCHHHHHHH----HHHHHHHHHHHHHHCCCCCEEEEEE--CCCHHH T ss_conf 39999749998704----4079588999837668983389999----9999999999876638983568996--794322 Q ss_pred CCCHHHHHHHHHHHCCC------CCCE--EEECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHH Q ss_conf 44289999988762136------8832--41025699999998741576069751343-777732058888989999999 Q gi|254780485|r 119 ERDLSIIVDMIKGVKSL------GLET--CMTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTL 189 (328) Q Consensus 119 ~~~~~~~~e~i~~i~~~------~~~i--~~~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~ 189 (328) T Consensus 110 ~L~~~~l~~ll~~l~~~f~~~~~~~EiTiE~nP~~~~~~~l~~l~~~GvNRiSlGVQsf~~~~L~~lgR~h~~~~~~~ai 189 (436) T PRK08208 110 LLNIAQLEKLFFSVFDVLGVDLWNIPKSVETSPTTTTAEKLALLNAFGVNRVSIGVQSFHDSELHALHRRQNAASVHQAL 189 (436) T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHH T ss_conf 19999999999999985899846715999866363609999999973987278741448989999846889999999999 Q ss_pred HHHHHCCC-CCCCEEEECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCC Q ss_conf 99998798-5577078668-989999999999997408888602054112048741244568798999999999999686 Q gi|254780485|r 190 ENVRKSGI-KVCCGGILGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMP 267 (328) Q Consensus 190 ~~a~~~G~-~~~sg~l~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP 267 (328) T Consensus 190 ~~~r~~gf~niniDLIyGlPgQt~~~~~~~l~~~l~l~p--~HIS~Y~L~iep~T~l~~~~~~~~d~~~~my~~a~~~L~ 267 (436) T PRK08208 190 ELIRAAHFPSLNIDLIYGIPGQTHASFMESLHQALVYRP--EELFLYPLYVRPLTGLGRRGTAWDDNMHSLYVLARDLLL 267 (436) T ss_pred HHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCC--CEEECCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 999981998575524436999999999999999982798--989876330478983012479893799999999999999 |
|
| >COG2516 Biotin synthase-related enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.9e-14 Score=115.21 Aligned_cols=209 Identities=23% Similarity=0.362 Sum_probs=143.7 Q ss_pred EEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC-------CCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHH Q ss_conf 699986453078683423212433547775641-------0006857999999999964983899730368887442899 Q gi|254780485|r 52 IQLSKLLNIKTGGCPENCGYCNQSVHNKSKLKA-------SKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSI 124 (328) Q Consensus 52 V~~~~~in~~TN~C~~~C~fCaf~~~~~~~~~~-------~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~ 124 (328) T Consensus 29 ~ta~l~t~~-~~~c~~~ca~c~~ar~s~a~p~~~~lsRv~w~~v~l~~~~~~~~~~~-g~~~rici~~i~~p~~~~d~~~ 106 (339) T COG2516 29 TTAYLMTTY-PGGCIADCAYCPQARSSTANPPKKVLSRVEWPAVALEEVLKRLFYDL-GNFKRICIQQIAYPRALNDLKL 106 (339) T ss_pred CEEEEEEEC-CCCEEECHHHCHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHH-CCCCCCCCEEECCCCCCCHHHH T ss_conf 056656622-78566465547355523458875036632662000787776766654-0214441100025542301666 Q ss_pred HHHHHHHHCCCCCCEEEE--CCCCC-HHHHHHHHCCCCCEEEEECCC-CHHHHHCCC----CCCCHHHHHHHHHHHHHC- Q ss_conf 999887621368832410--25699-999998741576069751343-777732058----888989999999999987- Q gi|254780485|r 125 IVDMIKGVKSLGLETCMT--LGMLS-FEQAQILSKAGLDYYNHNIDT-SERFYPHVT----TTHTFEDRLQTLENVRKS- 195 (328) Q Consensus 125 ~~e~i~~i~~~~~~i~~~--~g~~~-~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~----~~~~~~~~l~~~~~a~~~- 195 (328) T Consensus 107 i~~~~~~--~~~~~itiseci~~~~~~~~l~e~~klg~d~l~V~~daa~~~~~e~v~~~s~s~~S~e~~~~~l~~~~~~~ 184 (339) T COG2516 107 ILERLHI--RLGDPITISECITAVSLKEELEEYRKLGADYLGVAEDAANEELFEKVRKTSGSPHSWERYWEFLEKVAEAF 184 (339) T ss_pred HHHHHHH--CCCCCEEHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH T ss_conf 4366510--24785012023302451687899885423553578875077789998741589871888999999999985 Q ss_pred C-CCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCC Q ss_conf 9-855770786689899999999999974088886020541120487412445687989999999999996868 Q gi|254780485|r 196 G-IKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPK 268 (328) Q Consensus 196 G-~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~ 268 (328) T Consensus 185 ~k~rv~ihliVglGesD~~~ve~~~~v~~~g~---~v~Lfaf~P~~gt~me~r~~~pve~Yrk-~q~a~yli~~ 254 (339) T COG2516 185 GKGRVGIHLIVGLGESDKDIVETIKRVRKRGG---IVSLFAFTPLKGTQMENRKPPPVERYRK-IQVARYLIGN 254 (339) T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHHHCCC---EEEEEEECCCCCCCCCCCCCCCHHHHHH-HHHHHHHHHC T ss_conf 46774515796048756899999999985586---4899986465566445789986899999-9999999734 |
|
| >PRK05904 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.2e-13 Score=109.38 Aligned_cols=191 Identities=16% Similarity=0.210 Sum_probs=135.9 Q ss_pred CCCCCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHC---CCCCCE Q ss_conf 68342321243354777-56410006857999999999964983899730368887442899999887621---368832 Q gi|254780485|r 64 GCPENCGYCNQSVHNKS-KLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVK---SLGLET 139 (328) Q Consensus 64 ~C~~~C~fCaf~~~~~~-~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~---~~~~~i 139 (328) T Consensus 15 FC~~kC~YCdF~s~~~~~~~~~~~~~~~~el~~~~~~~~~~~i~TIyfGG--GTPSlL~~~~l~~ll~~i~~~~~~~~Ei 92 (353) T PRK05904 15 FCQYICTFCDFKRILKTPQTKKIFKDFLKNIKMHIKNFKIKQFKTIYLGG--GTPNCLNDQLLDILLSTIKPYVDNNCEF 92 (353) T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECC--CCCHHCCHHHHHHHHHHHHHHCCCCCEE T ss_conf 99870899989841887685999999999999998764799544899899--8602089999999999999763878359 Q ss_pred EE--ECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCCC-CCCCEEEECC-CCCHHHH Q ss_conf 41--025699999998741576069751343-77773205888898999999999998798-5577078668-9899999 Q gi|254780485|r 140 CM--TLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSGI-KVCCGGILGL-GEMIDDR 214 (328) Q Consensus 140 ~~--~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G~-~~~sg~l~G~-gEt~eer 214 (328) T Consensus 93 TiEaNP~~~~~ekL~~lk~~GVNRiSlGVQSf~d~~Lk~LGR~H~~~~~~~ai~~~r~~Gf~nIsiDLIyGlPgQT~~~~ 172 (353) T PRK05904 93 TIECNPELITQSQINLLKKNKVNRISLGVQSMNNNILKQLNRTHTIQDSKEAINLLHKNGIYNISCDFLYCLPILKLKDL 172 (353) T ss_pred EEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEECEEECCCCCCHHHH T ss_conf 99865144878999999964987688874559989999838999899999999999981997360042635999999999 Q ss_pred HHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCC-CCHHHHHHH Q ss_conf 99999997408888602054112048741244568-798999999 Q gi|254780485|r 215 IDMLLTLANLSTPPESIPINLLIPIPGSKFEENKK-VDPIEHVRI 258 (328) Q Consensus 215 i~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~-~~~~e~lr~ 258 (328) T Consensus 173 ~~~L~~~l~l~p--~HiS~Y~LtiE~gT~~~~~~~~~~~d~~~~~ 215 (353) T PRK05904 173 DEVFNFILKHKI--NHISFYSLEIKEGSILKKYHYTIDEDKEAEQ 215 (353) T ss_pred HHHHHHHHHCCC--CCEEEEEEEECCCCHHCCCCCCCCCHHHHHH T ss_conf 999999996599--9178888898579732047889992799999 |
|
| >PRK08599 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.6e-13 Score=107.94 Aligned_cols=199 Identities=19% Similarity=0.247 Sum_probs=139.5 Q ss_pred EEECCCCCCCCCCCCCCCCCCC--CCCCCCCCCCHHHHHHHHHHHHHCC---CEEEEEECCCCCCCCCCHHHHHHHHHHH Q ss_conf 4530786834232124335477--7564100068579999999999649---8389973036888744289999988762 Q gi|254780485|r 58 LNIKTGGCPENCGYCNQSVHNK--SKLKASKLINVDQVLKEAKNAKENG---ATRYCMGAAWREPKERDLSIIVDMIKGV 132 (328) Q Consensus 58 in~~TN~C~~~C~fCaf~~~~~--~~~~~~~~~~~Eei~~~a~~~~~~G---~~~~~l~~~~~~~~~~~~~~~~e~i~~i 132 (328) T Consensus 6 iHIP--FC~~~C~yC~f~~~~~~~~~~~~Y----~~aL~~Ei~~~~~~~~~~~~tiy~--GGGTPs~L~~~~l~~ll~~i 77 (377) T PRK08599 6 IHIP--FCEHICYYCDFNKVFIENQPVDEY----LDALIKEMESTVAKYIRKLKTIYI--GGGTPTALSAEQLERLLNAI 77 (377) T ss_pred EECC--CCCCCCCCCCCCCCCCCCCCHHHH----HHHHHHHHHHHHHHCCCCEEEEEE--CCCCCCCCCHHHHHHHHHHH T ss_conf 9727--899868999691646898779999----999999999765514995579997--99810009999999999999 Q ss_pred CCC-----CCCEE--EECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCCCC-CCCEE Q ss_conf 136-----88324--1025699999998741576069751343-777732058888989999999999987985-57707 Q gi|254780485|r 133 KSL-----GLETC--MTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSGIK-VCCGG 203 (328) Q Consensus 133 ~~~-----~~~i~--~~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~-~~sg~ 203 (328) T Consensus 78 ~~~f~~~~~~EiTiE~nP~~~~~~~l~~l~~~GvNRiSlGvQsf~~~~l~~lgR~h~~~~~~~~i~~~r~~gf~~iniDL 157 (377) T PRK08599 78 HRTLPLSDLEEFTFEANPGDLTKEKLQVLKDYGVNRISLGVQTFNDELLKKIGRTHNEEDVYESIANAKKAGFKNISIDL 157 (377) T ss_pred HHHCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEE T ss_conf 99769776732799955151639999999970998799965359879999868999899999999999975997411565 Q ss_pred EECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCC------CCCCCHHHHHHHHHHHHHHC Q ss_conf 8668-989999999999997408888602054112048741244------56879899999999999968 Q gi|254780485|r 204 ILGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEE------NKKVDPIEHVRIISVARILM 266 (328) Q Consensus 204 l~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~------~~~~~~~e~lr~iAi~RL~l 266 (328) T Consensus 158 IyGlP~Qt~~~~~~~l~~~~~l~p--~hiS~Y~L~ie~~t~~~~~~~~g~~~lp~~d~~~~m~~~~~~~L 225 (377) T PRK08599 158 IYALPGQTIEDVKESLDKALALDI--PHYSLYSLILEPKTVFYNLMRKGKLRLPTEDLEAEMYEYLMSEM 225 (377) T ss_pred ECCCCCCCHHHHHHHHHHHHHHCC--CEEEEEEEEECCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 427888989999999999973063--63455442335887688887559878999799999999999999 |
|
| >PRK05799 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.1e-13 Score=105.58 Aligned_cols=200 Identities=22% Similarity=0.319 Sum_probs=139.9 Q ss_pred EEECCCCCCCCCCCCCCCCCCCCC--CCCCCCCCHHHHHHHHHHHH-HCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCC Q ss_conf 453078683423212433547775--64100068579999999999-649838997303688874428999998876213 Q gi|254780485|r 58 LNIKTGGCPENCGYCNQSVHNKSK--LKASKLINVDQVLKEAKNAK-ENGATRYCMGAAWREPKERDLSIIVDMIKGVKS 134 (328) Q Consensus 58 in~~TN~C~~~C~fCaf~~~~~~~--~~~~~~~~~Eei~~~a~~~~-~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~ 134 (328) T Consensus 8 iHiP--FC~~~C~yC~f~~~~~~~~~~~~Y----~~~L~~Ei~~~~~~~~i~tiy~G--GGTPs~l~~~~l~~l~~~i~~ 79 (374) T PRK05799 8 IHIP--FCKQKCLYCDFPSYSGKEDLMMEY----IKALSKEIVNKTKNKKIKSIFIG--GGTPSYLSLEALEILLKTIKK 79 (374) T ss_pred EEEC--CCCCCCCCCCCCCCCCCCHHHHHH----HHHHHHHHHHHCCCCCEEEEEEC--CCCCCCCCHHHHHHHHHHHHH T ss_conf 9948--999858999794748870069999----99999999976579815499979--965022999999999999985 Q ss_pred C----CCCE--EEECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCCCC-CCCEEEEC Q ss_conf 6----8832--41025699999998741576069751343-777732058888989999999999987985-57707866 Q gi|254780485|r 135 L----GLET--CMTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSGIK-VCCGGILG 206 (328) Q Consensus 135 ~----~~~i--~~~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~-~~sg~l~G 206 (328) T Consensus 80 ~~~~~~~E~TiE~nP~~~~~~~l~~l~~~GvNRiSiGVQSf~~~~l~~lgR~h~~~~~~~ai~~~~~~gf~niniDLIyG 159 (374) T PRK05799 80 LNKKENLEFTVEGNPGTFTEEKLKILKSMGVNRISIGLQAWQNSLLKTLGRIHTFEEFLENYKLARKLGFNNINVDLMFG 159 (374) T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEEECC T ss_conf 68887845899856677899999999971997588853358899999847999899999999999975997466885448 Q ss_pred C-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCC------CCCCCHHHHHHHHHHHHHHCC Q ss_conf 8-989999999999997408888602054112048741244------568798999999999999686 Q gi|254780485|r 207 L-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEE------NKKVDPIEHVRIISVARILMP 267 (328) Q Consensus 207 ~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~------~~~~~~~e~lr~iAi~RL~lP 267 (328) T Consensus 160 lPgQt~~~~~~~l~~~~~l~p--~hiS~Y~L~i~~~t~~~~~~~~~~~~~p~~~~~~~my~~~~~~L~ 225 (374) T PRK05799 160 LPNQTLEDWKETLEKVVELSP--EHISCYSLIIEEGTPFYNLYENGKLKLPKEEEERKMYHYTIEFLK 225 (374) T ss_pred CCCCCHHHHHHHHHHHHHHCC--CEEEEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 988878999999999984172--501365420578867998875188899999999999999999998 |
|
| >COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-12 Score=104.41 Aligned_cols=205 Identities=19% Similarity=0.261 Sum_probs=147.3 Q ss_pred CCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHH Q ss_conf 89856999864530786834232124335477756410006857999999999964983899730368887442899999 Q gi|254780485|r 48 EPNHIQLSKLLNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVD 127 (328) Q Consensus 48 ~g~~V~~~~~in~~TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e 127 (328) T Consensus 6 ~gR~~~~LR-iSv-TdrCNfrC~YCm~eg~-~~~~~~~~~Ls~eei~~~~~~~~~~Gv~kvRl-TGGEPllR~dl~eIi~ 81 (322) T COG2896 6 FGRPVRYLR-ISV-TDRCNFRCTYCMPEGP-LAFLPKEELLSLEEIRRLVRAFAELGVEKVRL-TGGEPLLRKDLDEIIA 81 (322) T ss_pred CCCEECEEE-EEE-ECCCCCCCCCCCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE-ECCCCHHHCCHHHHHH T ss_conf 588702079-998-2673774644688886-56676545489999999999999739645897-1898313327999999 Q ss_pred HHHHHCCCCCCEEEE-CCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCCC-CCCCEEE Q ss_conf 887621368832410-25699999998741576069751343-77773205888898999999999998798-5577078 Q gi|254780485|r 128 MIKGVKSLGLETCMT-LGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSGI-KVCCGGI 204 (328) Q Consensus 128 ~i~~i~~~~~~i~~~-~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G~-~~~sg~l 204 (328) T Consensus 82 ~l~~~--~~~~islTTNG~~L~~~a~~Lk~AGl~rVNVSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN~V 159 (322) T COG2896 82 RLARL--GIRDLSLTTNGVLLARRAADLKEAGLDRVNVSLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLNTV 159 (322) T ss_pred HHHHC--CCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEE T ss_conf 87434--6442887445676799999999759868995034499899998867892999999999999769985578889 Q ss_pred ECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCC-CCCCCCCCCCHHHHHHHHHH Q ss_conf 6689899999999999974088886020541120487-41244568798999999999 Q gi|254780485|r 205 LGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPG-SKFEENKKVDPIEHVRIISV 261 (328) Q Consensus 205 ~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~g-t~l~~~~~~~~~e~lr~iAi 261 (328) T Consensus 160 v~kgvNd~ei~~l~e~~~~~~~~lrfIE---~m~~g~~~~~~~~~~~~~~~i~~~l~~ 214 (322) T COG2896 160 LMKGVNDDEIEDLLEFAKERGAQLRFIE---LMPLGEGNSWRLDKYLSLDEILRKLEE 214 (322) T ss_pred EECCCCHHHHHHHHHHHHHCCCCEEEEE---EEECCCCCCHHHHCCCCHHHHHHHHHH T ss_conf 8469887899999999852698447999---866686540344044549999999986 |
|
| >PRK07379 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-12 Score=104.80 Aligned_cols=208 Identities=15% Similarity=0.230 Sum_probs=141.5 Q ss_pred EEEEEECCCCCCCCCCCCCCCCCC---CCCCCCC--CCCCHHHHHHHHHHHHH--CCCEEEEEECCCCCCCCCCHHHHHH Q ss_conf 986453078683423212433547---7756410--00685799999999996--4983899730368887442899999 Q gi|254780485|r 55 SKLLNIKTGGCPENCGYCNQSVHN---KSKLKAS--KLINVDQVLKEAKNAKE--NGATRYCMGAAWREPKERDLSIIVD 127 (328) Q Consensus 55 ~~~in~~TN~C~~~C~fCaf~~~~---~~~~~~~--~~~~~Eei~~~a~~~~~--~G~~~~~l~~~~~~~~~~~~~~~~e 127 (328) T Consensus 12 slYiHIP--FC~~~C~YCdF~~~v~~~~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~i~tiy~G--GGTPSlL~~~~l~~ 87 (399) T PRK07379 12 SAYLHIP--FCRRRCFYCDFPISVVGDRQRGGTSGLIEEYVEVLCQEIAITPSLGQPLQTVFFG--GGTPSLLPVEQLER 87 (399) T ss_pred EEEEECC--CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC--CCHHHHCCHHHHHH T ss_conf 4888650--0669288999975176666665405799999999999997314159962189969--95567489999999 Q ss_pred HHHHHCCC-----CCCEE--EECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCCCC- Q ss_conf 88762136-----88324--1025699999998741576069751343-777732058888989999999999987985- Q gi|254780485|r 128 MIKGVKSL-----GLETC--MTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSGIK- 198 (328) Q Consensus 128 ~i~~i~~~-----~~~i~--~~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~- 198 (328) T Consensus 88 ll~~l~~~f~~~~~~EiTiE~nP~~~~~~~l~~l~~~GvNRiSiGvQSf~~~~L~~lgR~h~~~~~~~ai~~~~~~gf~n 167 (399) T PRK07379 88 ILLTLDQRFGIAPDAEISLEIDPGTFDLEQLQGYRSLGVNRVSLGVQAFQDELLALCGRSHRVKDIYQAVADIHQAGIEN 167 (399) T ss_pred HHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCC T ss_conf 99999986899988579998458989999999998569885889702386889998489999999999999999769975 Q ss_pred CCCEEEECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCC------CCCCHHHHHHHHHHHHHHCCC Q ss_conf 577078668-9899999999999974088886020541120487412445------687989999999999996868 Q gi|254780485|r 199 VCCGGILGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEEN------KKVDPIEHVRIISVARILMPK 268 (328) Q Consensus 199 ~~sg~l~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~------~~~~~~e~lr~iAi~RL~lP~ 268 (328) T Consensus 168 iniDLIyGlPgQt~~~~~~~l~~~~~l~p--~hiS~Y~L~~e~~T~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~ 242 (399) T PRK07379 168 FSLDLISGLPHQTLEDWQASLEAAIAINP--THLSCYDLVLEPVTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQ 242 (399) T ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHCCC--CEEEEEEEEECCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 54553307899889999999999973388--8078888896389779998605888999989999999999999986 |
|
| >PRK05628 coproporphyrinogen III oxidase; Validated | Back alignment and domain information |
|---|
Probab=99.57 E-value=6e-13 Score=106.43 Aligned_cols=201 Identities=18% Similarity=0.205 Sum_probs=139.3 Q ss_pred EEECCCCCCCCCCCCCCCCCCC------CCCCCCCCCCHHHHHHHHHHHHH-CC-----CEEEEEECCCCCCCCCCHHHH Q ss_conf 4530786834232124335477------75641000685799999999996-49-----838997303688874428999 Q gi|254780485|r 58 LNIKTGGCPENCGYCNQSVHNK------SKLKASKLINVDQVLKEAKNAKE-NG-----ATRYCMGAAWREPKERDLSII 125 (328) Q Consensus 58 in~~TN~C~~~C~fCaf~~~~~------~~~~~~~~~~~Eei~~~a~~~~~-~G-----~~~~~l~~~~~~~~~~~~~~~ 125 (328) T Consensus 7 iHiP--FC~~~C~yC~f~~~~~~~~~~~~~~~~Y----~~~L~~Ei~~~~~~l~~~~~~i~tiy~G--GGTPs~L~~~~l 78 (376) T PRK05628 7 VHVP--FCATRCGYCDFNTYTAAELGGGASPDGY----LDALRAELELAAAVLGDPAPPVSTVFVG--GGTPSLLGAEGL 78 (376) T ss_pred EECC--CCCCCCCCCCCCCCCCCCCCCCCCHHHH----HHHHHHHHHHHHHHHCCCCCEEEEEEEC--CCHHHHCCHHHH T ss_conf 8705--7646089997957336524787679999----9999999999987617789657899978--944664899999 Q ss_pred HHHHHHHCCC-----CCCEE--EECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCCC Q ss_conf 9988762136-----88324--1025699999998741576069751343-77773205888898999999999998798 Q gi|254780485|r 126 VDMIKGVKSL-----GLETC--MTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSGI 197 (328) Q Consensus 126 ~e~i~~i~~~-----~~~i~--~~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G~ 197 (328) T Consensus 79 ~~l~~~i~~~f~~~~~~EiTiE~nP~~~~~~~l~~l~~~GvnRiSlGvQsf~~~~l~~lgR~h~~~~~~~~~~~~~~~gf 158 (376) T PRK05628 79 ARVLDAVRDTFGLAPDAEVTTEANPESTSPEFFAALRAAGYTRVSLGMQSAAPHVLAVLDRTHTPGRAVAAAREARAAGF 158 (376) T ss_pred HHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCHHHHHHHHHHHHHCCC T ss_conf 99999999758999885699983426589999999997498759995155899999974999998999999999987599 Q ss_pred C-CCCEEEECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCC------CCCCHHHHHHHHHHHHHHCCC Q ss_conf 5-577078668-9899999999999974088886020541120487412445------687989999999999996868 Q gi|254780485|r 198 K-VCCGGILGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEEN------KKVDPIEHVRIISVARILMPK 268 (328) Q Consensus 198 ~-~~sg~l~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~------~~~~~~e~lr~iAi~RL~lP~ 268 (328) T Consensus 159 ~~in~DLIyGlP~Qt~~~~~~~l~~~~~l~p--~his~Y~l~~e~~t~~~~~~~~~~l~~p~e~~~~~~~~~~~~~L~~ 235 (376) T PRK05628 159 EHVNLDLIYGTPGETDDDLRRSLDAALEAGV--DHVSAYALIVEDGTALARRVRRGELPAPDDDVLADRYELADARLSA 235 (376) T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHCCC--CEEEEEEEEECCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 7255554427999999999999999973289--8156655565478677777751789999999999999999999984 |
|
| >PRK05660 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.4e-13 Score=106.26 Aligned_cols=205 Identities=14% Similarity=0.196 Sum_probs=139.1 Q ss_pred EEECCCCCCCCCCCCCCCCCCC-CC--CCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCC Q ss_conf 4530786834232124335477-75--64100068579999999999649838997303688874428999998876213 Q gi|254780485|r 58 LNIKTGGCPENCGYCNQSVHNK-SK--LKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKS 134 (328) Q Consensus 58 in~~TN~C~~~C~fCaf~~~~~-~~--~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~ 134 (328) T Consensus 11 iHiP--FC~~~C~YC~f~~~~~~~~~~~~~Y~~aL~~ei~~~~~~~~~~~i~tiy~--GGGTPs~L~~~~l~~l~~~i~~ 86 (378) T PRK05660 11 IHIP--WCVQKCPYCDFNSHALKGEVPEDEYVDHLLADLDADLPLVQGREVHSIFI--GGGTPSLFSAEAIQRLLDGVRA 86 (378) T ss_pred EECC--CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEE--CCCHHHHCCHHHHHHHHHHHHH T ss_conf 9727--89876999969650488877699999999999999877617975769997--8953330899999999999998 Q ss_pred C-----CCCEE--EECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCCCC-CCCEEEE Q ss_conf 6-----88324--1025699999998741576069751343-777732058888989999999999987985-5770786 Q gi|254780485|r 135 L-----GLETC--MTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSGIK-VCCGGIL 205 (328) Q Consensus 135 ~-----~~~i~--~~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~-~~sg~l~ 205 (328) T Consensus 87 ~f~~~~~~EiTiE~nP~~~~~~~l~~l~~~GvnRiSiGVQsf~~~~l~~lgR~h~~~~~~~ai~~~r~~gf~~iniDLiy 166 (378) T PRK05660 87 RLPFAPDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKLKRLGRIHGPDEAKRAAKLAQGAGLRSFNLDLMH 166 (378) T ss_pred HCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEECCCC T ss_conf 57987771489845705330889999998098759996143789999982799999999999999997699606542326 Q ss_pred CC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCC--CCHHHHHHHHHHHHHHCCC Q ss_conf 68-989999999999997408888602054112048741244568--7989999999999996868 Q gi|254780485|r 206 GL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKK--VDPIEHVRIISVARILMPK 268 (328) Q Consensus 206 G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~--~~~~e~lr~iAi~RL~lP~ 268 (328) T Consensus 167 GlP~Qt~~~~~~~l~~~~~l~p--~his~Y~L~~e~~T~~~~~~~~lp~~~~~~~my~~~~~~L~~ 230 (378) T PRK05660 167 GLPDQSLEEALDDLRQAIALNP--PHLSWYQLTIEPNTVFGSRPPVLPDDDALWDIFEQGHQLLTA 230 (378) T ss_pred CCCCCCHHHHHHHHHHHHCCCC--CCEEEEEEEECCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 8999889999999999864498--805788888658973764676699858999999999999997 |
|
| >PRK09058 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.1e-13 Score=108.40 Aligned_cols=203 Identities=15% Similarity=0.265 Sum_probs=138.8 Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCC--CCCCCCCCCCHHHHHHHHHHHHH----C--CCEEEEEECCCCCCCCCCHHHH Q ss_conf 99864530786834232124335477--75641000685799999999996----4--9838997303688874428999 Q gi|254780485|r 54 LSKLLNIKTGGCPENCGYCNQSVHNK--SKLKASKLINVDQVLKEAKNAKE----N--GATRYCMGAAWREPKERDLSII 125 (328) Q Consensus 54 ~~~~in~~TN~C~~~C~fCaf~~~~~--~~~~~~~~~~~Eei~~~a~~~~~----~--G~~~~~l~~~~~~~~~~~~~~~ 125 (328) T Consensus 59 LYiHIP----FC~~~C~yC~F~~~~~~~~~~~~Y----~~aL~~Ei~~~~~~~~~~~~~i~tvy~GGG--TPs~L~~~~l 128 (447) T PRK09058 59 LYIHIP----FCRTHCTFCGFFQNAWNPELVARY----TDALIRELAMEADSPLTQSAPIHAVYFGGG--TPTALSADDL 128 (447) T ss_pred EEEECC----CCCCCCCCCCCCCCCCCCCCHHHH----HHHHHHHHHHHHCCCCCCCCEEEEEEEECC--HHHHCCHHHH T ss_conf 999825----415868999884848881209999----999999999985410126981689998086--3474899999 Q ss_pred HHHHHHHCC-----CCCCEEE--ECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCCC Q ss_conf 998876213-----6883241--025699999998741576069751343-77773205888898999999999998798 Q gi|254780485|r 126 VDMIKGVKS-----LGLETCM--TLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSGI 197 (328) Q Consensus 126 ~e~i~~i~~-----~~~~i~~--~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G~ 197 (328) T Consensus 129 ~~l~~~i~~~f~l~~d~EiTiE~nP~~~~~~~l~~l~~~GvNRiSiGVQSf~~~vlk~lgR~h~~~~~~~~l~~l~~~g~ 208 (447) T PRK09058 129 ARLIEALREYLPLAPDCEITLEGRINGFDDEKIDAALDAGANRFSFGVQSFNTQVRRRAGRKDDREEVLAFLEELVARDR 208 (447) T ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCHHHHHHHHHHHHHCCC T ss_conf 99999999768998884698833878799999999996499805772544888899864799999999999999997499 Q ss_pred -CCCCEEEECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCC------C-CCCHHHHHHHHHHHHHHCCC Q ss_conf -5577078668-9899999999999974088886020541120487412445------6-87989999999999996868 Q gi|254780485|r 198 -KVCCGGILGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEEN------K-KVDPIEHVRIISVARILMPK 268 (328) Q Consensus 198 -~~~sg~l~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~------~-~~~~~e~lr~iAi~RL~lP~ 268 (328) T Consensus 209 ~~iniDLIyGlPgQT~e~~~~dl~~~~~l~p--~his~Y~L~~~~~t~~~~~~~~g~l~~~~d~~~~~~my~~a~~~L~~ 286 (447) T PRK09058 209 AAVVCDLIFGLPGQTPEIWQQDLAIVRDLGL--DGVDLYALNVLPGTPLAKAVEKGKLPPPATPAEQADMYAYGVEFLAQ 286 (447) T ss_pred CCEEEHHHCCCCCCCHHHHHHHHHHHHCCCC--CEEEEEEEEECCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 6376476427988999999999999964599--86887654504897799998749999985999999999999999997 |
|
| >PRK08807 consensus | Back alignment and domain information |
|---|
Probab=99.56 E-value=6e-13 Score=106.44 Aligned_cols=195 Identities=13% Similarity=0.153 Sum_probs=133.3 Q ss_pred CCCCCCCCCCCCCCCCCCC---CCCCCCCHHHHHHHHHH----HHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCC-- Q ss_conf 6834232124335477756---41000685799999999----99649838997303688874428999998876213-- Q gi|254780485|r 64 GCPENCGYCNQSVHNKSKL---KASKLINVDQVLKEAKN----AKENGATRYCMGAAWREPKERDLSIIVDMIKGVKS-- 134 (328) Q Consensus 64 ~C~~~C~fCaf~~~~~~~~---~~~~~~~~Eei~~~a~~----~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~-- 134 (328) T Consensus 17 FC~~~C~YCdf~s~~~~~~~~~~~y~----~~l~~ei~~~~~~~~~~~~~tiy~G--GGTPs~L~~~~l~~ll~~i~~~~ 90 (385) T PRK08807 17 WCVRKCPYCDFNSHAAKGALPFDAYV----DALIRDLDADLPLVWGRVVHSVFFG--GGTPSLFPPEAIDRFLQAAAARL 90 (385) T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHH----HHHHHHHHHHHHHCCCCEEEEEEEC--CCHHHHCCHHHHHHHHHHHHHHC T ss_conf 88885899989441078987699999----9999999974455069844389979--95557379999999999999966 Q ss_pred ---CCCCEE--EECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCCCC-CCCEEEECC Q ss_conf ---688324--1025699999998741576069751343-777732058888989999999999987985-577078668 Q gi|254780485|r 135 ---LGLETC--MTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSGIK-VCCGGILGL 207 (328) Q Consensus 135 ---~~~~i~--~~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~-~~sg~l~G~ 207 (328) T Consensus 91 ~~~~~~E~TiE~nP~~~~~~~l~~l~~~GvnRlSlGvQsf~~~~L~~lgR~h~~~~~~~ai~~~r~~gf~nin~DLiygl 170 (385) T PRK08807 91 RFAPNLEITLETNPGTAEHGRFDHYRAAGVNRLSFGVQSFDDVALQRLGRIHDSAEAERAIKLAQDAGYDNFNIDLMYAL 170 (385) T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCEEECC T ss_conf 97767169995272101088999998569875887415589999998489998999999999999749973130103269 Q ss_pred -CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCC---CCHHHHHHHHHHHHHHC Q ss_conf -989999999999997408888602054112048741244568---79899999999999968 Q gi|254780485|r 208 -GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKK---VDPIEHVRIISVARILM 266 (328) Q Consensus 208 -gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~---~~~~e~lr~iAi~RL~l 266 (328) T Consensus 171 P~Qt~~~~~~~l~~~~~l~p--~hiS~Y~L~ie~~t~~~~~~~~~lp~~d~~~~~~~~~~~~L 231 (385) T PRK08807 171 PEQTLLQAEHDLERAFALQP--THLSHYQLTLEPNTVFFARPPQGIPDDDAAWDMQEHCQRLL 231 (385) T ss_pred CCCCHHHHHHHHHHHHCCCC--CEEEEEEEEECCCCHHHHCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 99989999999999855599--84789888851783575454225996789999999999999 |
|
| >COG1032 Fe-S oxidoreductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-12 Score=104.54 Aligned_cols=191 Identities=21% Similarity=0.339 Sum_probs=133.5 Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEE----CCCCCCCCCCHHHHHH--- Q ss_conf 986453078683423212433547775641000685799999999996498389973----0368887442899999--- Q gi|254780485|r 55 SKLLNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMG----AAWREPKERDLSIIVD--- 127 (328) Q Consensus 55 ~~~in~~TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~----~~~~~~~~~~~~~~~e--- 127 (328) T Consensus 199 ~~~ve~-~RGCp~~C~FC~~~~~~-----~~r~~~~~~v~~ei~~~~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~l~ 271 (490) T COG1032 199 AFSVET-SRGCPRGCRFCSITKHF-----KYRRRRPERVVEEIKELIEEGGKRVVFFVDDIFLYGSPAL-NDEKRFELLS 271 (490) T ss_pred EEEEEE-ECCCCCCCCCCCCCCCC-----CCCCCCHHHHHHHHHHHHHHHHHCCCEECCCEEECCCCCC-CHHHHHHHHH T ss_conf 699999-78888899888886114-----6005788999999999999873214502355774478543-4167888879 Q ss_pred --HHHHHCCCCCCEE-----EECCCCC-HHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHH-HHHHHHHCCC Q ss_conf --8876213688324-----1025699-999998741576069751343-7777320588889899999-9999998798 Q gi|254780485|r 128 --MIKGVKSLGLETC-----MTLGMLS-FEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQ-TLENVRKSGI 197 (328) Q Consensus 128 --~i~~i~~~~~~i~-----~~~g~~~-~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~-~~~~a~~~G~ 197 (328) T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~r~d~~~~~~~~~~~~~~g~~~~~iG~Esgs~~~l~~~~k~~~~~~~~~~a~~~~~~~~~ 351 (490) T COG1032 272 LELIERGLRKGCRVHISAPSLRADTVTDEELLKLLREAGLRRVYIGIESGSEELLKKINKGITTEEVLEEAVKIAKEHGL 351 (490) T ss_pred HHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCC T ss_conf 99998630467603575230033437879999998764943699965899999999861478868889999999986798 Q ss_pred CCCCEEEECC-CCCHHHHHHH---HHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCCHH Q ss_conf 5577078668-9899999999---999974088886020541120487412445687989 Q gi|254780485|r 198 KVCCGGILGL-GEMIDDRIDM---LLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPI 253 (328) Q Consensus 198 ~~~sg~l~G~-gEt~eeri~~---l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~~~~ 253 (328) T Consensus 352 ~~~~~~i~G~pget~ed~~~t~~~~~~~~~~~~~-~~~~~~~~~p~p~t~~~~~~~~~~~ 410 (490) T COG1032 352 RVKLYFIVGLPGETEEDVKETIELAKFIKKLGPK-LYVSPSPFVPLPGTPLQEMPKLENE 410 (490) T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCC-CEEEEEEEEECCCCCHHHCCCCCCH T ss_conf 6179999827999979999999999999871867-4588764164698841322453201 |
|
| >PRK06582 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-12 Score=104.57 Aligned_cols=207 Identities=17% Similarity=0.191 Sum_probs=143.4 Q ss_pred CCEEEEEEEEEECCCCCCCCCCCCCCCCCCCC--CCCCCCCCCHHHHHHHHHHHH----HCCCEEEEEECCCCCCCCCCH Q ss_conf 98569998645307868342321243354777--564100068579999999999----649838997303688874428 Q gi|254780485|r 49 PNHIQLSKLLNIKTGGCPENCGYCNQSVHNKS--KLKASKLINVDQVLKEAKNAK----ENGATRYCMGAAWREPKERDL 122 (328) Q Consensus 49 g~~V~~~~~in~~TN~C~~~C~fCaf~~~~~~--~~~~~~~~~~Eei~~~a~~~~----~~G~~~~~l~~~~~~~~~~~~ 122 (328) T Consensus 9 ~~~lsLYiHIP----FC~~~C~yC~f~~~~~~~~~~~~y~----~~l~~Ei~~~~~~~~~~~i~tiy~GG--GTPs~L~~ 78 (390) T PRK06582 9 ANDLSIYIHWP----FCLSKCPYCDFNSHVASTIDHNQWL----KSYEKEIEYFKDIIQNKYIKSIFFGG--GTPSLMNP 78 (390) T ss_pred CCCEEEEEEEC----CCCCCCCCCCCCCEECCCCCHHHHH----HHHHHHHHHHHHHCCCCEEEEEEECC--CHHHHCCH T ss_conf 77749999838----9988089993907148858899999----99999999988764798057999898--51352899 Q ss_pred HHHHHHHHHHCCC-----CCCEE--EECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHH Q ss_conf 9999988762136-----88324--1025699999998741576069751343-77773205888898999999999998 Q gi|254780485|r 123 SIIVDMIKGVKSL-----GLETC--MTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRK 194 (328) Q Consensus 123 ~~~~e~i~~i~~~-----~~~i~--~~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~ 194 (328) T Consensus 79 ~~l~~l~~~l~~~~~~~~~~EiTiE~nP~~~~~~~l~~l~~~GvNRiSiGVQsf~~~~L~~lgR~h~~~~~~~~i~~~~~ 158 (390) T PRK06582 79 VIVEGIINKISNLAIIDNQTEITLETNPTSFETEKFKAFKSAGINRVSIGVQSLKEDDLKKLGRTHDCMQAIKTIEAANT 158 (390) T ss_pred HHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHH T ss_conf 99999999999857888873489984432061989999985598679997133898999971899889999999999987 Q ss_pred CCCCCCCEEEECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCC------CCCCCHHHHHHHHHHHHHHCC Q ss_conf 7985577078668-989999999999997408888602054112048741244------568798999999999999686 Q gi|254780485|r 195 SGIKVCCGGILGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEE------NKKVDPIEHVRIISVARILMP 267 (328) Q Consensus 195 ~G~~~~sg~l~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~------~~~~~~~e~lr~iAi~RL~lP 267 (328) T Consensus 159 ~f~niniDLI~GlP~QT~~~~~~~L~~~~~l~p--~hiS~Y~L~ie~~t~~~~~~~~g~~~lp~~d~~~~~y~~~~~~L~ 236 (390) T PRK06582 159 IFPRVSFDLIYARSGQTLKDWQEELKQAMQLAT--SHISLYQLTIEKGTPFYKLFKEGNLILPHSDAAAEMYEWTNHYLE 236 (390) T ss_pred HCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCC--CCEEEEEEEECCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 463354454147999989999999999983389--851789888537977888874189899988999999999999998 |
|
| >PRK08949 consensus | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-12 Score=104.25 Aligned_cols=199 Identities=17% Similarity=0.273 Sum_probs=135.6 Q ss_pred EEECCCCCCCCCCCCCCCCCC-CCCC--CCCCCCCHHHHHHHHHH----HHHCCCEEEEEECCCCCCCCCCHHHHHHHHH Q ss_conf 453078683423212433547-7756--41000685799999999----9964983899730368887442899999887 Q gi|254780485|r 58 LNIKTGGCPENCGYCNQSVHN-KSKL--KASKLINVDQVLKEAKN----AKENGATRYCMGAAWREPKERDLSIIVDMIK 130 (328) Q Consensus 58 in~~TN~C~~~C~fCaf~~~~-~~~~--~~~~~~~~Eei~~~a~~----~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~ 130 (328) T Consensus 11 iHIP--FC~~~C~YCdf~s~~~~~~~~~~~Y~----~aL~~El~~~~~~~~~~~~~tiy~GG--GTPs~L~~~~l~~ll~ 82 (378) T PRK08949 11 IHIP--WCVQKCPYCDFNSHALKGEVPHQDYV----QHLLADLDADVAYAQGRELHTIFIGG--GTPSLLSAEAMQTLLD 82 (378) T ss_pred EEEC--CCCCCCCCCCCCCCCCCCCCCHHHHH----HHHHHHHHHHHHHCCCCEEEEEEEEC--CHHHHCCHHHHHHHHH T ss_conf 9808--87671899999863288887599999----99999999865650797687999728--2320079999999999 Q ss_pred HHCC-----CCCCEE--EECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCCCC-CCC Q ss_conf 6213-----688324--1025699999998741576069751343-777732058888989999999999987985-577 Q gi|254780485|r 131 GVKS-----LGLETC--MTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSGIK-VCC 201 (328) Q Consensus 131 ~i~~-----~~~~i~--~~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~-~~s 201 (328) T Consensus 83 ~i~~~f~~~~~~EiTiE~nP~~~~~~~l~~l~~~GvNRiSlGvQsf~~~~L~~lgR~h~~~~~~~a~~~~~~~gf~~ini 162 (378) T PRK08949 83 GVRARLPFAADAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKLKRLGRIHGPQEAKRAAKLASGLGLRSFNL 162 (378) T ss_pred HHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEE T ss_conf 99986798767058995582523188999999719866999503489899998379999999999999998659962502 Q ss_pred EEEECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCC--CHHHHHHHHHHHHHHC Q ss_conf 078668-9899999999999974088886020541120487412445687--9899999999999968 Q gi|254780485|r 202 GGILGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKV--DPIEHVRIISVARILM 266 (328) Q Consensus 202 g~l~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~--~~~e~lr~iAi~RL~l 266 (328) T Consensus 163 DLiyglP~Qt~~~~~~~l~~~~~l~p--~hiS~Y~L~ie~~t~~~~~~~~lp~~~~~~~~y~~~~~~L 228 (378) T PRK08949 163 DLMHGLPDQSLEEALDDLRQAIALNP--PHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLL 228 (378) T ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCC--CEEEEEEEEECCCCHHHHCCCCCCCHHHHHHHHHHHHHHH T ss_conf 32368999899999999999966699--8378874686489737646778997599999999999999 |
|
| >PRK09057 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.4e-13 Score=105.13 Aligned_cols=202 Identities=12% Similarity=0.161 Sum_probs=135.5 Q ss_pred EEECCCCCCCCCCCCCCCCCC---CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCC Q ss_conf 453078683423212433547---77564100068579999999999649838997303688874428999998876213 Q gi|254780485|r 58 LNIKTGGCPENCGYCNQSVHN---KSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKS 134 (328) Q Consensus 58 in~~TN~C~~~C~fCaf~~~~---~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~ 134 (328) T Consensus 9 iHIP--FC~~~C~YCdf~~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~i~tiy~GG--GTPs~L~~~~l~~ll~~l~~ 84 (381) T PRK09057 9 VHWP--FCLAKCPYCDFNSHVRHAPIDQARFAAAFLRELATEAARTGPRTLTSIFFGG--GTPSLMQPETVAALLDAIAR 84 (381) T ss_pred EEEC--CCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC--CHHHCCCHHHHHHHHHHHHH T ss_conf 9817--8888289994987017887879999999999999999875999357999799--61230999999999999998 Q ss_pred ---C--CCCEE--EECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEC Q ss_conf ---6--88324--1025699999998741576069751343-77773205888898999999999998798557707866 Q gi|254780485|r 135 ---L--GLETC--MTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILG 206 (328) Q Consensus 135 ---~--~~~i~--~~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G 206 (328) T Consensus 85 ~f~~~~~~EiTiE~nP~~~~~~~l~~l~~~GvnRiSlGVQsf~~~~l~~lgR~h~~~~~~~ai~~~r~~f~~in~DLiyG 164 (381) T PRK09057 85 LWPVADDIEITLEANPTSVEAGRFRGYRAAGVNRVSLGVQALNDADLRFLGRLHSVAEALAAIDLAREIFPRVSFDLIYA 164 (381) T ss_pred HCCCCCCCEEEEECCHHHCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHCC T ss_conf 67986572367723742201679999997098769896234999999973899989999999999998654512066427 Q ss_pred C-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCC------CCCCHHHHHHHHHHHHHH Q ss_conf 8-9899999999999974088886020541120487412445------687989999999999996 Q gi|254780485|r 207 L-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEEN------KKVDPIEHVRIISVARIL 265 (328) Q Consensus 207 ~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~------~~~~~~e~lr~iAi~RL~ 265 (328) T Consensus 165 lPgQt~~~~~~~l~~~~~l~p--~hiS~Y~L~~e~~t~~~~~~~~g~~~~p~~d~~~~~y~~~~~~ 228 (381) T PRK09057 165 RPGQTLAAWRAELKEALGLAA--DHLSLYQLTIEEGTAFYGLHAAGKLTLPDEDLAADLYELTQEV 228 (381) T ss_pred CCCCCHHHHHHHHHHHHHCCC--CCCEEEEEEECCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHH T ss_conf 988988899999999971277--7432235664489727878755888999999999999999999 |
|
| >PRK06294 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-12 Score=104.77 Aligned_cols=203 Identities=17% Similarity=0.191 Sum_probs=136.5 Q ss_pred EEECCCCCCCCCCCCCCCCCCC--CCCCCCCC-CCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCC Q ss_conf 4530786834232124335477--75641000-68579999999999649838997303688874428999998876213 Q gi|254780485|r 58 LNIKTGGCPENCGYCNQSVHNK--SKLKASKL-INVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKS 134 (328) Q Consensus 58 in~~TN~C~~~C~fCaf~~~~~--~~~~~~~~-~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~ 134 (328) T Consensus 11 iHIP--FC~~~C~yC~f~~~~~~~~~~~~Y~~al~~e~~~~~~~~~~~~~~~tiy~G--GGTPs~L~~~~L~~ll~~i~~ 86 (374) T PRK06294 11 IHIP--FCSKKCHYCSFYTIPYKEESVSLYCNAVIKEGLKKLAPLRCTHFIDTVFFG--GGTPSLVPPDLIQDILKTLEA 86 (374) T ss_pred EECC--CCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEC--CCHHHHCCHHHHHHHHHHHCC T ss_conf 8627--899879999881024882339999999999999997643489817999978--970163889999999997401 Q ss_pred C-CCCE--EEECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCCC-CCCCEEEECC-C Q ss_conf 6-8832--41025699999998741576069751343-77773205888898999999999998798-5577078668-9 Q gi|254780485|r 135 L-GLET--CMTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSGI-KVCCGGILGL-G 208 (328) Q Consensus 135 ~-~~~i--~~~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G~-~~~sg~l~G~-g 208 (328) T Consensus 87 ~~~~E~TiE~nP~~~~~~~l~~l~~~GinRlSlGVQsf~d~~l~~lgR~h~~~~~~~~i~~~~~~gf~~iniDLIyGlPg 166 (374) T PRK06294 87 PHATEITLEANPENLSFSYLRALAQTPINRISIGVQTFDDPLLKLLGRTHSSSAAIEAVLECYEHGFSNLSIDLIYGLPT 166 (374) T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCC T ss_conf 68843899853476999999999972987598972107678898738999999999999999975997433211047888 Q ss_pred CCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCC------CCCHHHHHHHHHHHHHHC Q ss_conf 8999999999999740888860205411204874124456------879899999999999968 Q gi|254780485|r 209 EMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENK------KVDPIEHVRIISVARILM 266 (328) Q Consensus 209 Et~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~------~~~~~e~lr~iAi~RL~l 266 (328) T Consensus 167 Qt~~~~~~~l~~~~~l~p--~hiS~Y~L~iep~t~~~~~~~~~~~~~p~~~~~~~~~~~~~~~L 228 (374) T PRK06294 167 QSLSDFIMDLHQALTLPI--THISLYNLTIDPHTSFYKHRKILLPSIADEDILAEMSLAAEELL 228 (374) T ss_pred CCHHHHHHHHHHHHHCCC--CEEEEEEEEECCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 888999999999973496--74555555765896588861338999989999999999999999 |
|
| >PRK08446 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.7e-12 Score=103.37 Aligned_cols=179 Identities=15% Similarity=0.193 Sum_probs=130.5 Q ss_pred CCCCCCCCCCCCCCC-CCCC-CCCCCCCHHHHHHHHHHH-H----HCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCC-- Q ss_conf 683423212433547-7756-410006857999999999-9----649838997303688874428999998876213-- Q gi|254780485|r 64 GCPENCGYCNQSVHN-KSKL-KASKLINVDQVLKEAKNA-K----ENGATRYCMGAAWREPKERDLSIIVDMIKGVKS-- 134 (328) Q Consensus 64 ~C~~~C~fCaf~~~~-~~~~-~~~~~~~~Eei~~~a~~~-~----~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~-- 134 (328) T Consensus 9 FC~~~C~YCdF~~~~~~~~~~~~Y----~~aL~~Ei~~~~~~~~~~~~i~tiy~G--GGTPS~l~~~~l~~ll~~l~~~~ 82 (351) T PRK08446 9 FCESKCGYCAFNSYEDKFDLKEEY----FQALCLDLKFQLKQFIQDEKIESVFIG--GGTPSTVSAKLYEPIFEIIYPYL 82 (351) T ss_pred CCCCCCCCCCCCCEECCCCCHHHH----HHHHHHHHHHHHHHHCCCCCEEEEEEC--CCHHHHCCHHHHHHHHHHHHHHC T ss_conf 838808999792851795679999----999999999998762689936699968--97456379999999999999766 Q ss_pred -CCCCEE--EECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCCCC-CCCEEEECC-C Q ss_conf -688324--1025699999998741576069751343-777732058888989999999999987985-577078668-9 Q gi|254780485|r 135 -LGLETC--MTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSGIK-VCCGGILGL-G 208 (328) Q Consensus 135 -~~~~i~--~~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~-~~sg~l~G~-g 208 (328) T Consensus 83 ~~~~EiTiE~nP~~~~~~~l~~l~~~GvNRiSiGVQSf~d~~Lk~lgR~H~~~~~~~ai~~~r~~gf~niniDLIyGlP~ 162 (351) T PRK08446 83 SKDCEITTEANPNSATLAWLKGMKNLGVNRISFGVQSFHEDKLKFLGRIHSKNQIIKAIENAKKAGFKNISIDLIYNTKL 162 (351) T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEECHHHHCCCCC T ss_conf 98835999767686899999999864987699973137689999818998899999999999984996342255317999 Q ss_pred CCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCC Q ss_conf 899999999999974088886020541120487412445687 Q gi|254780485|r 209 EMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKV 250 (328) Q Consensus 209 Et~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~ 250 (328) T Consensus 163 Qt~e~~~~~l~~~~~l~--p~HiS~Y~L~ie~~T~~~~~~~~ 202 (351) T PRK08446 163 DNKKLLKEELKLAKELP--ITHLSAYALTIEENTPFEEKNAK 202 (351) T ss_pred CCHHHHHHHHHHHHCCC--CCEEECCCCEECCCCHHHHCCCC T ss_conf 99999999999997489--69797423044699823325678 |
|
| >PRK13347 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-11 Score=97.86 Aligned_cols=206 Identities=15% Similarity=0.211 Sum_probs=135.0 Q ss_pred CCEEEEEEEEEECCCCCCCCCCCCCCCCCC-CC--CCCCCCCCCHHHHHHHHHHHHH-----CCCEEEEEECCCCCCCCC Q ss_conf 985699986453078683423212433547-77--5641000685799999999996-----498389973036888744 Q gi|254780485|r 49 PNHIQLSKLLNIKTGGCPENCGYCNQSVHN-KS--KLKASKLINVDQVLKEAKNAKE-----NGATRYCMGAAWREPKER 120 (328) Q Consensus 49 g~~V~~~~~in~~TN~C~~~C~fCaf~~~~-~~--~~~~~~~~~~Eei~~~a~~~~~-----~G~~~~~l~~~~~~~~~~ 120 (328) T Consensus 48 ~~plsLYiHIP----FC~~~C~YC~f~~~~~~~~~~~~~Yl----~~L~~Ei~~~~~~~~~~~~v~ti~~G--GGTPs~L 117 (453) T PRK13347 48 EEPVSLYLHVP----FCRSLCWFCGCNTIITQRDAPVEAYV----AALIREIRLVAALLPQRRRVSQLHWG--GGTPTIL 117 (453) T ss_pred CCCEEEEEECC----CCCCCCCCCCCCCCCCCCCCHHHHHH----HHHHHHHHHHHHHHCCCCEEEEEEEC--CCCHHHC T ss_conf 99869998527----71680899989733778866799999----99999999988762789807899978--8482859 Q ss_pred CHHHHHHHHHHHCC---C--CCCEEE--ECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHH Q ss_conf 28999998876213---6--883241--025699999998741576069751343-777732058888989999999999 Q gi|254780485|r 121 DLSIIVDMIKGVKS---L--GLETCM--TLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENV 192 (328) Q Consensus 121 ~~~~~~e~i~~i~~---~--~~~i~~--~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a 192 (328) T Consensus 118 ~~~~l~~ll~~l~~~f~~~~~~EitiE~nP~~~~~~~l~~l~~~GvNRlSlGVQsfd~~vl~~lgR~h~~~~~~~av~~a 197 (453) T PRK13347 118 NPDQFERLMAALRDAFDFAPEAEIAVEIDPRTVTAEMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELL 197 (453) T ss_pred CHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHH T ss_conf 99999999999997589999966999867786899999999864986588713457878999825989999999999999 Q ss_pred HHCCCC-CCCEEEECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCC-----CCCCCCCCHHHHHHHHHHHHHH Q ss_conf 987985-577078668-989999999999997408888602054112048741-----2445687989999999999996 Q gi|254780485|r 193 RKSGIK-VCCGGILGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSK-----FEENKKVDPIEHVRIISVARIL 265 (328) Q Consensus 193 ~~~G~~-~~sg~l~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~-----l~~~~~~~~~e~lr~iAi~RL~ 265 (328) T Consensus 198 r~~Gf~~iniDLIyGlP~QT~~~~~~tL~~~~~l~p--dhiS~Y~l~~~p~~~~~qr~i~~~~LP~~~~~~~m~~~a~~~ 275 (453) T PRK13347 198 RAAGFESINFDLIYGLPHQTVESFRETLDKVIALSP--DRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAAADR 275 (453) T ss_pred HHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCC--CEEEECCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHH T ss_conf 981898655555524899989999999999983199--978852320265323565325767895999999999999999 Q ss_pred C Q ss_conf 8 Q gi|254780485|r 266 M 266 (328) Q Consensus 266 l 266 (328) T Consensus 276 L 276 (453) T PRK13347 276 L 276 (453) T ss_pred H T ss_conf 9 |
|
| >TIGR00089 TIGR00089 RNA modification enzyme, MiaB family; InterPro: IPR005839 This entry represents a family defined on the basis of sequence similarity | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.5e-11 Score=97.12 Aligned_cols=189 Identities=16% Similarity=0.306 Sum_probs=136.5 Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECC----C-CCCCC--CC-HHHH Q ss_conf 998645307868342321243354777564100068579999999999649838997303----6-88874--42-8999 Q gi|254780485|r 54 LSKLLNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAA----W-REPKE--RD-LSII 125 (328) Q Consensus 54 ~~~~in~~TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~----~-~~~~~--~~-~~~~ 125 (328) T Consensus 153 ~~a~~~I-~~GC~~~CtyCivP~-~RG--~-~rSr~~e~Il~E~~~Lv~~G~kEi~L~Gqnv~~YgG~D~~~~~~~La~L 227 (455) T TIGR00089 153 TRAFVKI-QEGCDKFCTYCIVPY-TRG--R-ERSRPPEDILEEVKELVSKGVKEITLLGQNVNAYGGKDLEGKTNSLADL 227 (455) T ss_pred EEEEEEE-CCCCCCCCCEEEECC-CCC--E-ECCCCHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCHHHH T ss_conf 3899984-026586977688134-266--0-0135889999999999846980999998852562477888897647999 Q ss_pred HHHHHH-HCCC-CCC-EEEECCCCCHHHHHHHHCC--C--CCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHC-- Q ss_conf 998876-2136-883-2410256999999987415--7--6069751343-777732058888989999999999987-- Q gi|254780485|r 126 VDMIKG-VKSL-GLE-TCMTLGMLSFEQAQILSKA--G--LDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKS-- 195 (328) Q Consensus 126 ~e~i~~-i~~~-~~~-i~~~~g~~~~~~~~~Lk~a--G--~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~-- 195 (328) T Consensus 228 L~~l~~ki~G~~RIR~~~~hP~~~~d~li~~~~~~~~~~v~~~lHlPvQSGSd~iLK~M~R~Y~~e~~~~~~~k~r~~~P 307 (455) T TIGR00089 228 LRELSKKIDGIERIRFTSSHPDDVTDDLIELIAENKDPKVCKHLHLPVQSGSDRILKRMNRKYTREEYLEIVEKLRAKVP 307 (455) T ss_pred HHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEECCCEECCCHHHHHCCCCCCCHHHHHHHHHHHHHHCC T ss_conf 99984005970268860467032687899999850788535202212661886999703789888999999999998478 Q ss_pred CCCCCCEEEECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCC Q ss_conf 985577078668-989999999999997408888602054112048741244568 Q gi|254780485|r 196 GIKVCCGGILGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKK 249 (328) Q Consensus 196 G~~~~sg~l~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~ 249 (328) T Consensus 308 ~~~i~TDiIVGFPGETeEdF~~Tl~l~~ev~F--~~~~~F~YSpR~gTpAa~~~d 360 (455) T TIGR00089 308 DAAITTDIIVGFPGETEEDFEETLDLVEEVKF--DKLHSFIYSPRPGTPAADMKD 360 (455) T ss_pred CCEEECCEEECCCCCCHHHHHHHHHHHHHCCC--CEEEEECCCCCCCCCCCCCCC T ss_conf 81775026882899988999999999852384--434312057888874635678 |
Most of these proteins are not yet characterised, but those that are include CDK5 regulatory subunit-associated protein 1, which specifically inhibits CDK5 activation by CDK5R1 . MiaB, a tRNA modification enzyme . The size of proteins in this entry ranges from 47 to 61 kDa and they contain six conserved cysteines, three of which are clustered. . |
| >PRK08898 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.7e-12 Score=99.91 Aligned_cols=196 Identities=14% Similarity=0.168 Sum_probs=132.2 Q ss_pred EEECCCCCCCCCCCCCCCCCC-CCCC---CCCCCCCHHHHHHHHHHHH----HCCCEEEEEECCCCCCCCCCHHHHHHHH Q ss_conf 453078683423212433547-7756---4100068579999999999----6498389973036888744289999988 Q gi|254780485|r 58 LNIKTGGCPENCGYCNQSVHN-KSKL---KASKLINVDQVLKEAKNAK----ENGATRYCMGAAWREPKERDLSIIVDMI 129 (328) Q Consensus 58 in~~TN~C~~~C~fCaf~~~~-~~~~---~~~~~~~~Eei~~~a~~~~----~~G~~~~~l~~~~~~~~~~~~~~~~e~i 129 (328) T Consensus 24 iHIP--FC~~~C~YC~f~s~~~~~~~~~~~~Y~----~aL~~Ei~~~~~~~~~~~~~tiy~G--GGTPs~L~~~~l~~l~ 95 (393) T PRK08898 24 VHFP--WCVRKCPYCDFNSHEWKGGGIPEAAYL----DALRADLEQALPLVWGRQVHTVFIG--GGTPSLLSAAGLDRLL 95 (393) T ss_pred EECC--CCCCCCCCCCCCCCCCCCCCCCHHHHH----HHHHHHHHHHHHHHCCCEEEEEEEC--CCHHHHCCHHHHHHHH T ss_conf 8717--871609999881422787886799999----9999999975777069867799976--8424638999999999 Q ss_pred HHHCC---C--CCCE--EEECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCC Q ss_conf 76213---6--8832--41025699999998741576069751343-777732058888989999999999987985577 Q gi|254780485|r 130 KGVKS---L--GLET--CMTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSGIKVCC 201 (328) Q Consensus 130 ~~i~~---~--~~~i--~~~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~s 201 (328) T Consensus 96 ~~l~~~f~~~~~~E~tiE~nP~~~~~~~l~~l~~~GvnRiSlGVQsf~~~~l~~lgR~h~~~~~~~~i~~~~~~f~~ini 175 (393) T PRK08898 96 SDVRALLPLDPDAEITLEANPGTFEAEKFAQFRASGVNRLSIGIQSFNDAHLKALGRIHDGAEARAAIEIAAKHFDNFNL 175 (393) T ss_pred HHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCC T ss_conf 99998589765731688736250609999999854986489952028999999818999999999999999973746672 Q ss_pred EEEECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCC--CCHHHHHHHHHHHH Q ss_conf 078668-989999999999997408888602054112048741244568--79899999999999 Q gi|254780485|r 202 GGILGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKK--VDPIEHVRIISVAR 263 (328) Q Consensus 202 g~l~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~--~~~~e~lr~iAi~R 263 (328) T Consensus 176 DLiyGlP~Qt~~~~~~~l~~~~~l~p--~hiS~Y~L~iep~T~~~~~~~~lP~~d~~~~m~~~~~ 238 (393) T PRK08898 176 DLMYALPNQTLDECRADVETALAFGP--PHLSLYHLTLEPNTLFAKFPPALPDDDASADMQDWIH 238 (393) T ss_pred HHHHCCCCCCHHHHHHHHHHHHCCCC--CEEEEEEEEECCCCHHHHCCCCCCCHHHHHHHHHHHH T ss_conf 89835988989999999999862499--9589877776489733215767959899999999999 |
|
| >COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.8e-12 Score=98.32 Aligned_cols=188 Identities=15% Similarity=0.265 Sum_probs=131.3 Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCC----CCCC---CCCHHHHH Q ss_conf 9986453078683423212433547775641000685799999999996498389973036----8887---44289999 Q gi|254780485|r 54 LSKLLNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAW----REPK---ERDLSIIV 126 (328) Q Consensus 54 ~~~~in~~TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~----~~~~---~~~~~~~~ 126 (328) T Consensus 144 ~~A~v~I-~eGCn~~CtfCiiP~~-R---G~~rSr~~e~Il~ev~~Lv~~G~kEI~L~gqdv~aYG~D~~~~~~~l~~Ll 218 (437) T COG0621 144 VRAFVKI-QEGCNKFCTFCIIPYA-R---GKERSRPPEDILKEVKRLVAQGVKEIVLTGQDVNAYGKDLGGGKPNLADLL 218 (437) T ss_pred EEEEEEH-HCCCCCCCCEEEEECC-C---CCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEEHHHCCCCCCCCCCCHHHHH T ss_conf 4799881-2086788880640536-7---875577989999999999988974999998811010446777766899999 Q ss_pred HHHHHHCCC-CCCE-EEECCCCCHHHHHHHHCC-CC-CEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHC--CCCC Q ss_conf 988762136-8832-410256999999987415-76-069751343-777732058888989999999999987--9855 Q gi|254780485|r 127 DMIKGVKSL-GLET-CMTLGMLSFEQAQILSKA-GL-DYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKS--GIKV 199 (328) Q Consensus 127 e~i~~i~~~-~~~i-~~~~g~~~~~~~~~Lk~a-G~-~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~--G~~~ 199 (328) T Consensus 219 ~~l~~I~G~~riR~~~~~P~~~~d~lIe~~~~~~kv~~~lHlPvQsGsd~ILk~M~R~yt~e~~~~~i~k~R~~~Pd~~i 298 (437) T COG0621 219 RELSKIPGIERIRFGSSHPLEFTDDLIEAIAETPKVCPHLHLPVQSGSDRILKRMKRGYTVEEYLEIIEKLRAARPDIAI 298 (437) T ss_pred HHHHCCCCCEEEEEECCCCHHCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEE T ss_conf 99960799108999358800118899999865784143446755569879999737876799999999999986898567 Q ss_pred CCEEEECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCC Q ss_conf 77078668-98999999999999740888860205411204874124456 Q gi|254780485|r 200 CCGGILGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENK 248 (328) Q Consensus 200 ~sg~l~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~ 248 (328) T Consensus 299 ~tDiIVGFPgETEedFe~tl~lv~e~~f--d~~~~F~YSpRpGTpAa~~~ 346 (437) T COG0621 299 STDIIVGFPGETEEDFEETLDLVEEVRF--DRLHVFKYSPRPGTPAALMP 346 (437) T ss_pred ECCEEEECCCCCHHHHHHHHHHHHHHCC--CEEEEEECCCCCCCCCCCCC T ss_conf 5267997999999999999999997488--87853304899998211377 |
|
| >PRK09249 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.4e-11 Score=97.22 Aligned_cols=204 Identities=16% Similarity=0.212 Sum_probs=131.7 Q ss_pred CCEEEEEEEEEECCCCCCCCCCCCCCCCCCC---CCCCCCCCCCHHHHHHHHHHHHH-----CCCEEEEEECCCCCCCCC Q ss_conf 9856999864530786834232124335477---75641000685799999999996-----498389973036888744 Q gi|254780485|r 49 PNHIQLSKLLNIKTGGCPENCGYCNQSVHNK---SKLKASKLINVDQVLKEAKNAKE-----NGATRYCMGAAWREPKER 120 (328) Q Consensus 49 g~~V~~~~~in~~TN~C~~~C~fCaf~~~~~---~~~~~~~~~~~Eei~~~a~~~~~-----~G~~~~~l~~~~~~~~~~ 120 (328) T Consensus 49 ~~plSLYiHiP----FC~~~C~YC~~~~~~~~~~~~~~~Y----l~~L~~Ei~~~~~~l~~~~~v~~i~~G--GGTPs~L 118 (456) T PRK09249 49 GSPLSLYVHIP----FCRSLCYYCGCNKIITRDHEKADPY----LDALEKEIALVAPLLPGGRKVSQLHWG--GGTPTFL 118 (456) T ss_pred CCCEEEEEECC----CCCCCCCCCCCCCCCCCCCCHHHHH----HHHHHHHHHHHHHHHCCCCCEEEEEEC--CCCHHHC T ss_conf 99559998517----8168289999801357885579999----999999999988761789836799978--9670649 Q ss_pred CHHHHHHHHHHHCCC-----CCCEE--EECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHH Q ss_conf 289999988762136-----88324--1025699999998741576069751343-777732058888989999999999 Q gi|254780485|r 121 DLSIIVDMIKGVKSL-----GLETC--MTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENV 192 (328) Q Consensus 121 ~~~~~~e~i~~i~~~-----~~~i~--~~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a 192 (328) T Consensus 119 ~~~~l~~l~~~l~~~f~~~~~~EitiE~nP~~~~~~~l~~l~~~GvnRiSlGVQsfd~~vl~~igR~h~~~~~~~~i~~a 198 (456) T PRK09249 119 SPEQLTRLMALLREHFNFAPDAEISIEIDPRELDLEMLDALRELGFNRLSLGVQDFDPEVQKAINRIQPFELTFALVEAA 198 (456) T ss_pred CHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHH T ss_conf 99999999999998668898835999843475879999999845975688605357879999852889999999999999 Q ss_pred HHCCCC-CCCEEEECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCC-----CCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 987985-577078668-9899999999999974088886020541120487-----41244568798999999999999 Q gi|254780485|r 193 RKSGIK-VCCGGILGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPG-----SKFEENKKVDPIEHVRIISVARI 264 (328) Q Consensus 193 ~~~G~~-~~sg~l~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~g-----t~l~~~~~~~~~e~lr~iAi~RL 264 (328) T Consensus 199 r~~Gf~~in~DLIyGLP~QT~~~~~~tl~~~~~l~P--dhis~y~yah~P~~~~~qr~i~~~~LP~~~~~~~m~~~a~~ 275 (456) T PRK09249 199 RELGFTSINFDLIYGLPKQTPESFARTLEKVLELRP--DRLAVFNYAHVPWLFKAQRKIDEADLPSPEEKLEILQAAIE 275 (456) T ss_pred HHCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHCCCC--CEEEECCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHH T ss_conf 981997210488606998769999999999965599--88995022347204556530365679799999999999999 |
|
| >PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=4e-11 Score=94.19 Aligned_cols=174 Identities=17% Similarity=0.266 Sum_probs=123.8 Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHC Q ss_conf 99864530786834232124335477756410006857999999999964983899730368887442899999887621 Q gi|254780485|r 54 LSKLLNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVK 133 (328) Q Consensus 54 ~~~~in~~TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~ 133 (328) T Consensus 17 ~~v~~el-T~~CNL~C~hCy~~~~~~---~~~~ELs~~e~~~~id~l~~~Gv~~v~~-tGGEPllr~D~---~ei~~~a~ 88 (375) T PRK05301 17 LWLLAEL-TYRCPLQCPYCSNPLDLA---RHGAELSTAEWIRVLREARALGVLQLHF-SGGEPLLRKDL---EELVAHAR 88 (375) T ss_pred EEEEEHH-HCHHCCCCCCCCCCCCCC---CCCCCCCHHHHHHHHHHHHHCCCCEEEE-CCCCCCCCCCH---HHHHHHHH T ss_conf 2843573-140078784669850048---7657899999999999999869988996-18652456689---99999999 Q ss_pred CCCCCEEE--ECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCC-CCCHHHHHHHHHHHHHCCCCCCCEEEECCCC Q ss_conf 36883241--025699999998741576069751343-7777320588-8898999999999998798557707866898 Q gi|254780485|r 134 SLGLETCM--TLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTT-THTFEDRLQTLENVRKSGIKVCCGGILGLGE 209 (328) Q Consensus 134 ~~~~~i~~--~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~-~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gE 209 (328) T Consensus 89 ~~G~~~~l~TNG~lit~~~a~~L~~~gl~~v~vSlDg~~~e~hD~~rG~~G~f~~~~~~i~~l~~~Gi~v~i~~ti~-r~ 167 (375) T PRK05301 89 RLGLYTNLITSGVGLTEARLAALKAAGLDHIQLSFQDSDPELADRIAGTRGAFAQKLEVARLVKAHGYPLTLNAVIH-RH 167 (375) T ss_pred HCCCEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEC-CC T ss_conf 76975899606745579999999850998899956779877877763788629999999999997498169998723-05 Q ss_pred CHHHHHHHHHHHHHCCCCCCEEECCCEEE Q ss_conf 99999999999974088886020541120 Q gi|254780485|r 210 MIDDRIDMLLTLANLSTPPESIPINLLIP 238 (328) Q Consensus 210 t~eeri~~l~~lr~l~~~~~~v~~~~~~p 238 (328) T Consensus 168 N~~~l~~i~~la~~lGv~--~~~l~~~~~ 194 (375) T PRK05301 168 NIDQIPRIIELAVELGAD--RLELANTQY 194 (375) T ss_pred CHHHHHHHHHHHHHCCCC--EEEEEEEEE T ss_conf 688899999999972998--289876567 |
|
| >KOG2672 consensus | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.3e-12 Score=100.09 Aligned_cols=177 Identities=17% Similarity=0.311 Sum_probs=135.2 Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCC-CCCCHHHHHHHHHHH Q ss_conf 9986453078683423212433547775641000685799999999996498389973036888-744289999988762 Q gi|254780485|r 54 LSKLLNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREP-KERDLSIIVDMIKGV 132 (328) Q Consensus 54 ~~~~in~~TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~-~~~~~~~~~e~i~~i 132 (328) T Consensus 110 ATATIMlmGDTCTRGCRFCsVKT-sR~Pp----PlDp~EPeNTAeAIasWgl~YiVlTSVDRDDlpDgGa~HiAkTVq~i 184 (360) T KOG2672 110 ATATIMLMGDTCTRGCRFCSVKT-SRNPP----PLDPNEPENTAEAIASWGLDYIVLTSVDRDDLPDGGANHIAKTVQKI 184 (360) T ss_pred EEEEEEEECCCCCCCCCEEEEEC-CCCCC----CCCCCCCCCHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHH T ss_conf 36898863474346752012103-78896----77999864489999971888699971145647675227899999999 Q ss_pred CCCCCCEEEECCCC----CHHHHHHHHCCCCCEEEEECCCCHHHHHCCCC-CCCHHHHHHHHHHHHHC--CCCCCCEEEE Q ss_conf 13688324102569----99999987415760697513437777320588-88989999999999987--9855770786 Q gi|254780485|r 133 KSLGLETCMTLGML----SFEQAQILSKAGLDYYNHNIDTSERFYPHVTT-THTFEDRLQTLENVRKS--GIKVCCGGIL 205 (328) Q Consensus 133 ~~~~~~i~~~~g~~----~~~~~~~Lk~aG~~~~~~~let~~~~~~~~~~-~~~~~~~l~~~~~a~~~--G~~~~sg~l~ 205 (328) T Consensus 185 K~k~p~ilvE~L~pDF~Gd~~~Ve~va~SGLDV~AHNvETVe~Ltp~VRD~RA~yrQSL~VLk~aK~~~P~litktsiMl 264 (360) T KOG2672 185 KEKAPEILVECLTPDFRGDLKAVEKVAKSGLDVYAHNVETVEELTPFVRDPRANYRQSLSVLKHAKEVKPGLITKTSIML 264 (360) T ss_pred HHHCCCCCHHHCCCCCCCCHHHHHHHHHCCCCCEECCHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHCCCCEEHHHHHH T ss_conf 85284232132475545734799999853740000111408760233318540167769999987751887012021000 Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCEEECCCEE Q ss_conf 68989999999999997408888602054112 Q gi|254780485|r 206 GLGEMIDDRIDMLLTLANLSTPPESIPINLLI 237 (328) Q Consensus 206 G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~ 237 (328) T Consensus 265 glgetdeei~~tl~dLr~~~vd--v~t~gqym 294 (360) T KOG2672 265 GLGETDEEIKQTLKDLRAADVD--VVTFGQYM 294 (360) T ss_pred CCCCCHHHHHHHHHHHHHCCCC--EEECCCCC T ss_conf 2678889999999999971970--88400005 |
|
| >COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.3e-11 Score=94.76 Aligned_cols=201 Identities=20% Similarity=0.345 Sum_probs=139.5 Q ss_pred EEEEEEEEEECCCCCCCCCCCCCCCCCCCCC---CCCCCCCCHHHHHHHHHHHHHC-----CCEEEEEECCCCCCCCC-- Q ss_conf 5699986453078683423212433547775---6410006857999999999964-----98389973036888744-- Q gi|254780485|r 51 HIQLSKLLNIKTGGCPENCGYCNQSVHNKSK---LKASKLINVDQVLKEAKNAKEN-----GATRYCMGAAWREPKER-- 120 (328) Q Consensus 51 ~V~~~~~in~~TN~C~~~C~fCaf~~~~~~~---~~~~~~~~~Eei~~~a~~~~~~-----G~~~~~l~~~~~~~~~~-- 120 (328) T Consensus 34 ~~slYiHiP----FC~~~C~YC~fn~~~~~~~~~~~~Y~----~aL~~Ei~~~~~~~~~~~~v~ti~~GGG--TPslL~~ 103 (416) T COG0635 34 PLSLYIHIP----FCVSKCPYCDFNSHVTKRGQPVDEYL----DALLEEIELVAALLGGQREVKTIYFGGG--TPSLLSP 103 (416) T ss_pred CCEEEEECC----CHHCCCCCCCCEEEECCCCCHHHHHH----HHHHHHHHHHHHHCCCCCEEEEEEECCC--CCCCCCH T ss_conf 736888723----21250887888545347777399999----9999999998862278872789997698--3267799 Q ss_pred -CHHHHHHHHHHHCC-C--CCCEEE--ECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHH Q ss_conf -28999998876213-6--883241--025699999998741576069751343-7777320588889899999999999 Q gi|254780485|r 121 -DLSIIVDMIKGVKS-L--GLETCM--TLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVR 193 (328) Q Consensus 121 -~~~~~~e~i~~i~~-~--~~~i~~--~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~ 193 (328) T Consensus 104 ~~l~~ll~~l~~~~~~~~~~~EitiE~nP~~~~~e~~~~l~~~GvNRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~ 183 (416) T COG0635 104 EQLERLLKALRELFNDLDPDAEITIEANPGTVEAEKFKALKEAGVNRISLGVQSFNDEVLKALGRIHDEEEAKEAVELAR 183 (416) T ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHH T ss_conf 99999999999972357888279995088866899999999829877986014599899997478887899999999998 Q ss_pred HCCC-CCCCEEEECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCC-----CCHHHHHHHHHHHH Q ss_conf 8798-5577078668-989999999999997408888602054112048741244568-----79899999999999 Q gi|254780485|r 194 KSGI-KVCCGGILGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKK-----VDPIEHVRIISVAR 263 (328) Q Consensus 194 ~~G~-~~~sg~l~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~-----~~~~e~lr~iAi~R 263 (328) T Consensus 184 ~~g~~~in~DLIyglP~QT~~~~~~~l~~a~~l~--pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~ 258 (416) T COG0635 184 KAGFTSINIDLIYGLPGQTLESLKEDLEQALELG--PDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVE 258 (416) T ss_pred HCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCC--CCEEEEEEEEECCCCHHHHHCCCCCCCCCHHHHHHHHHHHH T ss_conf 6389747887243899999999999999998349--98786462686588567662335778998689999999999 |
|
| >PRK08629 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.2e-10 Score=90.95 Aligned_cols=207 Identities=14% Similarity=0.094 Sum_probs=129.4 Q ss_pred CCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC--CEEEEEECCCCCCCCCCHHHHH Q ss_conf 98569998645307868342321243354777564100068579999999999649--8389973036888744289999 Q gi|254780485|r 49 PNHIQLSKLLNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENG--ATRYCMGAAWREPKERDLSIIV 126 (328) Q Consensus 49 g~~V~~~~~in~~TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G--~~~~~l~~~~~~~~~~~~~~~~ 126 (328) T Consensus 41 ~~~~~LYiHIP----FC~~~C~YC~F~~~~~~~~~~--~~Y~~aL~kEi~~~~~~~~~i~tiy~GGG--TPs~L-~~~l~ 111 (424) T PRK08629 41 GKKYMLYAHVP----FCHTLCPYCSFHRFLFKEDKA--RAYFISLRKEMEMVKELGYDFESMYVGGG--TTTIL-EDELA 111 (424) T ss_pred CCEEEEEEECC----CCCCCCCCCCCCCCCCCCCHH--HHHHHHHHHHHHHHHHCCCCCCEEEECCC--HHHCC-HHHHH T ss_conf 98568998905----407988899895826882419--99999999999998853998376997797--12257-99999 Q ss_pred HHHHHHCCCC--CCEE--EECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHH---HHHHHHHHHHHCCC- Q ss_conf 9887621368--8324--1025699999998741576069751343-777732058888989---99999999998798- Q gi|254780485|r 127 DMIKGVKSLG--LETC--MTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFE---DRLQTLENVRKSGI- 197 (328) Q Consensus 127 e~i~~i~~~~--~~i~--~~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~---~~l~~~~~a~~~G~- 197 (328) T Consensus 112 ~~l~~~~~~f~~~EiTiE~nP~~~~~~~l~~l~~~-vNRiSlGVQsf~~~~L~~lgR~h~~~~~~~~~~~~~~a~~~-f~ 189 (424) T PRK08629 112 KTLELAKKLFSIKEVSCESDPNHLDPPGLKQLKGL-IDRLSIGVQSFNDDILKMVDRYEKFGSGQETFEKIMAAKGL-FP 189 (424) T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHH-CCEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHH-CC T ss_conf 99999986489824999538686899999999864-25166623669988999809999854699999999997634-46 Q ss_pred CCCCEEEECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCC---CCCCHHHHHHHHHHHHHHCCC Q ss_conf 5577078668-9899999999999974088886020541120487412445---687989999999999996868 Q gi|254780485|r 198 KVCCGGILGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEEN---KKVDPIEHVRIISVARILMPK 268 (328) Q Consensus 198 ~~~sg~l~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~---~~~~~~e~lr~iAi~RL~lP~ 268 (328) T Consensus 190 niniDLIyGlP~QT~~~~~~~l~~~~~l~p--~hIS~Y~L~iep~t~~~~~~~l~~p~~d~~~~~~~i~~~~~~~ 262 (424) T PRK08629 190 IINVDLIFNFPGQTDEVLQHDLDIAKRLDP--RQITTYPLMKSHQTRKSVKGSLGASQKDNARQYRQILNSLFGQ 262 (424) T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHCCCC--CEEECCCCEECCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHCC T ss_conf 253532327999999999999999981798--9898636622647213423789989879999999999997279 |
|
| >TIGR01574 miaB-methiolase tRNA-i(6)A37 thiotransferase enzyme MiaB; InterPro: IPR006463 These sequences are homologs of the MiaB enzyme responsible for the modification of the isopentenylated adenine-37 base of most bacterial and eukaryotic tRNAs that read codons beginning with uracil (all except tRNA(I,V) Ser) | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.1e-10 Score=85.45 Aligned_cols=192 Identities=18% Similarity=0.230 Sum_probs=139.9 Q ss_pred EEEEEEEECCCCCCCCCCCCC--CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCC-C---------CCCCC Q ss_conf 999864530786834232124--33547775641000685799999999996498389973036-8---------88744 Q gi|254780485|r 53 QLSKLLNIKTGGCPENCGYCN--QSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAW-R---------EPKER 120 (328) Q Consensus 53 ~~~~~in~~TN~C~~~C~fCa--f~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~-~---------~~~~~ 120 (328) T Consensus 154 ~~~sfv~I-m~GCdkfCtYCiVPYtRG-----~E-~Sr~~~~Il~Ev~~l~~~G~kEi~LLGQNVN~YRG~~frne~~~~ 226 (456) T TIGR01574 154 KFKSFVNI-MEGCDKFCTYCIVPYTRG-----EE-ISRPLDDILQEVQKLAEKGVKEITLLGQNVNAYRGKDFRNEGKTV 226 (456) T ss_pred CCEEEEEC-CCCCCCCCCEEECCCCCC-----CC-CCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEE T ss_conf 42252403-147688545466153048-----20-125744699999999865864874036530111587522588673 Q ss_pred CHHHHHHHHHH---HCCC---CCCEEEECCCCCHHHHHHHHCCC--CCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHH Q ss_conf 28999998876---2136---88324102569999999874157--6069751343-77773205888898999999999 Q gi|254780485|r 121 DLSIIVDMIKG---VKSL---GLETCMTLGMLSFEQAQILSKAG--LDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLEN 191 (328) Q Consensus 121 ~~~~~~e~i~~---i~~~---~~~i~~~~g~~~~~~~~~Lk~aG--~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~ 191 (328) T Consensus 227 ~f~dLL~~l~rrCe~~~~i~RIRFtsSHP~~~~D~liev~a~~~~l~~~~HLPvQsGS~~vLk~M~R~Yt~e~Y~~~v~K 306 (456) T TIGR01574 227 DFADLLRELARRCEVKDGIERIRFTSSHPKDFDDDLIEVLAKEPKLCKLLHLPVQSGSSEVLKLMKRKYTRERYLELVRK 306 (456) T ss_pred CHHHHHHHHHHHCCHHHCCCCEEECCCCCCCCCHHHHHHHHCCCCEEEEECCCCEECHHHHHHHCCCCCCHHHHHHHHHH T ss_conf 66999999987510221585113137878765446878873789466664375200707998510775568999999999 Q ss_pred HHHC--CCCCCCEEEECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCCHH Q ss_conf 9987--985577078668-9899999999999974088886020541120487412445687989 Q gi|254780485|r 192 VRKS--GIKVCCGGILGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPI 253 (328) Q Consensus 192 a~~~--G~~~~sg~l~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~~~~ 253 (328) T Consensus 307 Lk~~~Pnv~lStDiivGFPGEt~edFE~Tl~l~~~V~F--d~~f~F~Ys~ReGTpAa~m~d~vp~ 369 (456) T TIGR01574 307 LKEAVPNVSLSTDIIVGFPGETEEDFEETLDLLREVEF--DSAFSFIYSPREGTPAADMPDDVPE 369 (456) T ss_pred HHHHCCCCEECCCEEEECCCCCHHHHHHHHHHHHHCCC--CCEEEEEECCCCCCCCCCCCCCCCH T ss_conf 98737871212453673687784668999999852262--4123344138676855678788648 |
Adenine-37 is next to the anticodon on the 3 side in these tRNAs, and lack of modification at this site leads to an increased spontaneous mutation frequency. Isopentenylated A-37 is modified by methylthiolation at position 2, either by MiaB alone or in concert with a separate methylase yet to be discovered (MiaC?) , , .. |
| >TIGR00510 lipA lipoic acid synthetase; InterPro: IPR003698 Lipoic acid is a covalently bound disulphide-containing cofactor required for function of the pyruvate dehydrogenase, alpha-ketoglutarate dehydrogenase, and glycine cleavage enzyme complexes of Escherichia coli | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.3e-10 Score=89.08 Aligned_cols=196 Identities=17% Similarity=0.255 Sum_probs=146.2 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCC-CCCCHHHHHHHHHHHCCCCCCEE Q ss_conf 78683423212433547775641000685799999999996498389973036888-74428999998876213688324 Q gi|254780485|r 62 TGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREP-KERDLSIIVDMIKGVKSLGLETC 140 (328) Q Consensus 62 TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~-~~~~~~~~~e~i~~i~~~~~~i~ 140 (328) T Consensus 76 g~~c~~~c~fc~~~~~-~~p~----~pdp~ep~~~~~~~~~~~l~~~~~~~~~~ddl~dgg~~~~~~~~~~~~~~~p~~~ 150 (310) T TIGR00510 76 GDICTRRCPFCDVAHG-RNPL----PPDPEEPEKLAETIKDLGLKYVVITSVDRDDLEDGGAGHLAECVEALREKLPNIK 150 (310) T ss_pred HHHHHCCCCCCCCCCC-CCCC----CCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCE T ss_conf 1365224763102246-7789----8873322568999987305535775122000234534678999999875245413 Q ss_pred EEC----CCC-CHHHHHHHHCCCCCEEEEECCCCHHHHHCCCC-CCCHHHHHHHHHHHHHC--CCCCCCEEEECCCCCHH Q ss_conf 102----569-99999987415760697513437777320588-88989999999999987--98557707866898999 Q gi|254780485|r 141 MTL----GML-SFEQAQILSKAGLDYYNHNIDTSERFYPHVTT-THTFEDRLQTLENVRKS--GIKVCCGGILGLGEMID 212 (328) Q Consensus 141 ~~~----g~~-~~~~~~~Lk~aG~~~~~~~let~~~~~~~~~~-~~~~~~~l~~~~~a~~~--G~~~~sg~l~G~gEt~e 212 (328) T Consensus 151 ~e~l~~df~g~~~~~~~~~~~~~~~~~~hn~e~~~~~~~~~~~~~~~y~~~l~~l~~~~~~~p~~~~k~g~~~glge~~~ 230 (310) T TIGR00510 151 IETLVPDFRGRDLKALDILLDAPPDVYNHNLETVPRLTPFVRPRGATYRWSLKLLERAKETLPNLPTKSGLMVGLGETNE 230 (310) T ss_pred EEEECCCCCHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCHH T ss_conf 21001320104689999886246134530112334543333013321688999999988750321011220110475247 Q ss_pred HHHHHHHHHHHCCCCCCEEECC-CEEEC-CCCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 9999999997408888602054-11204-8741244568798999999999999 Q gi|254780485|r 213 DRIDMLLTLANLSTPPESIPIN-LLIPI-PGSKFEENKKVDPIEHVRIISVARI 264 (328) Q Consensus 213 eri~~l~~lr~l~~~~~~v~~~-~~~p~-~gt~l~~~~~~~~~e~lr~iAi~RL 264 (328) T Consensus 231 ~~~~~~~dl~~~g~~--~~~~g~y~~p~~~h~p~~~y~~p~~fd~~~~~~~~~g 282 (310) T TIGR00510 231 EILQTLKDLRDHGVT--VLTLGQYLRPSRRHLPVKRYVSPEEFDYWKERALELG 282 (310) T ss_pred HHHHHHHHHHHCCCC--EEECCCHHCCHHHCCCCHHCCCCCHHHHHHHHHHHHH T ss_conf 899999989863740--5650101052001253000257402467887776510 |
Two genes, lipA and lipB, are involved in lipoic acid biosynthesis or metabolism. LipA is required for the insertion of the first sulphur into the octanoic acid backbone. LipB functions downstream of LipA, but its role in lipoic acid metabolism remains unclear . Lipoate synthase (or lipoic acid synthetase) catalyses the formation of alpha-(+)-lipoic acid, required for lipoate biosynthesis.; GO: 0016992 lipoate synthase activity, 0009107 lipoate biosynthetic process. |
| >TIGR01125 TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125; InterPro: IPR005840 This is a family of mainly hypothetical proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.8e-09 Score=80.98 Aligned_cols=190 Identities=18% Similarity=0.257 Sum_probs=136.2 Q ss_pred EEEEC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC----------H--- Q ss_conf 64530-786834232124335477756410006857999999999964983899730368887442----------8--- Q gi|254780485|r 57 LLNIK-TGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERD----------L--- 122 (328) Q Consensus 57 ~in~~-TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~----------~--- 122 (328) T Consensus 165 YAYlKvaEGC~~~CaFCiIP~~-r---G~~rSR~ie~i~~Ea~~L~~~GvKEiiliaQDTt~YG~DL~~R~~~~~~e~v~ 240 (475) T TIGR01125 165 YAYLKVAEGCNRRCAFCIIPSL-R---GKLRSRPIEEILKEAKRLVDQGVKEIILIAQDTTAYGVDLYTRESEFDGEQVK 240 (475) T ss_pred EEEEEECCCCCCCCCEECCCCC-C---CCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCCCCHHHH T ss_conf 0368700577898652136233-6---77677688889999999984398389999640347764111105522401457 Q ss_pred HHHHHHHHHHCCCC-C-CE---EEECCCCCHHHHHHHHCCCCCEEEEECC-----CCHHHHHCCCCCCCHHHHHHHHHHH Q ss_conf 99999887621368-8-32---4102569999999874157606975134-----3777732058888989999999999 Q gi|254780485|r 123 SIIVDMIKGVKSLG-L-ET---CMTLGMLSFEQAQILSKAGLDYYNHNID-----TSERFYPHVTTTHTFEDRLQTLENV 192 (328) Q Consensus 123 ~~~~e~i~~i~~~~-~-~i---~~~~g~~~~~~~~~Lk~aG~~~~~~~le-----t~~~~~~~~~~~~~~~~~l~~~~~a 192 (328) T Consensus 241 ~~L~~Ll~~L~k~~G~~WiR~~YlYP~~~~~~vI~~m~~~~--KvLPYlDiPLQH~sd~ILK~M~R~~~~~~~~~~i~~~ 318 (475) T TIGR01125 241 SKLVELLEELGKLGGIYWIRLLYLYPDELTDDVIDLMAEGP--KVLPYLDIPLQHASDRILKLMRRPGSGEEQLDLIERL 318 (475) T ss_pred HHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHCCC--CCCCEECCCCCCCCHHHHHCCCCCCCHHHHHHHHHHH T ss_conf 89999999740058962278887608888667889986389--8051225431238737874278996388999999999 Q ss_pred HHC--CCCCCCEEEECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCCHHH Q ss_conf 987--985577078668-98999999999999740888860205411204874124456879899 Q gi|254780485|r 193 RKS--GIKVCCGGILGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIE 254 (328) Q Consensus 193 ~~~--G~~~~sg~l~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~~~~e 254 (328) T Consensus 319 R~~~P~~vlRttfIVGFPGETEEdF~eL~~Fv~e~~~--D~lG~F~YS~eEgt~A~~Lpd~vPeE 381 (475) T TIGR01125 319 REKVPDAVLRTTFIVGFPGETEEDFQELLDFVEEGQF--DRLGVFTYSPEEGTDAFALPDQVPEE 381 (475) T ss_pred HHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCC--CEEEEEECCCCCCCHHHCCCCCCCHH T ss_conf 9755661772246886889987889999999852021--50000207832366035077887888 |
. |
| >TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type; InterPro: IPR006466 This clade of sequences is closely related to MiaB, a modifier of isopentenylated adenosine-37 of certain eukaryotic and bacterial tRNAs (see IPR006463 from INTERPRO) | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.2e-09 Score=82.50 Aligned_cols=205 Identities=20% Similarity=0.353 Sum_probs=136.0 Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCC-----CCCC-HHHHHH Q ss_conf 9986453078683423212433547775641000685799999999996498389973036888-----7442-899999 Q gi|254780485|r 54 LSKLLNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREP-----KERD-LSIIVD 127 (328) Q Consensus 54 ~~~~in~~TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~-----~~~~-~~~~~e 127 (328) T Consensus 144 ~i~i~pI-~~GC~~~CsYCi-~K~ARG~L~S---~PpEkiV~~ar~l~~~G~kEI~iT-s~DT~~YG~DiG~~kLPeLL~ 217 (487) T TIGR01578 144 LIEILPI-NQGCLGNCSYCI-TKIARGKLAS---YPPEKIVEKARELVAEGAKEIWIT-SQDTAAYGKDIGERKLPELLR 217 (487) T ss_pred CCCCCCC-CCCCCCCCCEEE-EEEEECCCCC---CCCHHHHHHHHHHHHCCCCEEEEC-CCCCCCCCCCCCCCCCHHHHH T ss_conf 7555543-666356887546-7776445248---872256899999997053126513-446663442237621279999 Q ss_pred -HHHHHCCCCCCEEEECCCCC--------HHHHHHHHC-CCCCEEEE-ECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHC Q ss_conf -88762136883241025699--------999998741-57606975-1343-777732058888989999999999987 Q gi|254780485|r 128 -MIKGVKSLGLETCMTLGMLS--------FEQAQILSK-AGLDYYNH-NIDT-SERFYPHVTTTHTFEDRLQTLENVRKS 195 (328) Q Consensus 128 -~i~~i~~~~~~i~~~~g~~~--------~~~~~~Lk~-aG~~~~~~-~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~ 195 (328) T Consensus 218 ~~~t~I~g~---F~~RVGMmnP~~~~~IldeL~~v~~~h~kV~kFLHlPvQSGsD~VL~~M~R~y~v~~f~~Iv~~FR~~ 294 (487) T TIGR01578 218 RLITEIPGD---FRLRVGMMNPKNVLEILDELIEVFQSHDKVYKFLHLPVQSGSDSVLKEMKREYTVDDFEDIVEKFRER 294 (487) T ss_pred HHHHHCCCC---CEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHH T ss_conf 998625993---27876258876334788999999854882000115420158758897448565257789999999876 Q ss_pred --CCCCCCEEEECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCCH---HHHHHHHH-HHHHHCCC Q ss_conf --985577078668-989999999999997408888602054112048741244568798---99999999-99996868 Q gi|254780485|r 196 --GIKVCCGGILGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDP---IEHVRIIS-VARILMPK 268 (328) Q Consensus 196 --G~~~~sg~l~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~~~---~e~lr~iA-i~RL~lP~ 268 (328) T Consensus 295 ~~~~tl~TDiIvGFp~EtdddFE~T~~l~~k~R--Pe~In~~~fS~RpgT~Aa~~~~~~~~i~K~Rs~~l~dlfysyePy 372 (487) T TIGR01578 295 FPDLTLSTDIIVGFPTETDDDFEETMELLRKYR--PEKINVTKFSPRPGTEAAKMKRLDTNIKKKRSKALTDLFYSYEPY 372 (487) T ss_pred HCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHC--CCEEEEECCCCCCCCHHHHHCCCCCCEEHHHHHHHHHHHHHCCCC T ss_conf 268647300167178988355899999999828--983453024688887113305899620116667777654202630 Q ss_pred C Q ss_conf 7 Q gi|254780485|r 269 S 269 (328) Q Consensus 269 ~ 269 (328) T Consensus 373 a 373 (487) T TIGR01578 373 A 373 (487) T ss_pred C T ss_conf 0 |
Sequence alignments suggest that this family of sequences perform the same chemical transformation as MiaB, perhaps on a different (or differently modified) tRNA base substrate. This clade represents a subfamily that spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this group of sequences , , .. |
| >COG2100 Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.1e-08 Score=75.97 Aligned_cols=205 Identities=16% Similarity=0.173 Sum_probs=132.6 Q ss_pred EEEC-CCCCCCCCCCCCCCCCC--CCCCCCCCCCCHHHHHHHHHHHHH--CCCEEEEEECCCCCCCCCCHHHHHHHHHHH Q ss_conf 4530-78683423212433547--775641000685799999999996--498389973036888744289999988762 Q gi|254780485|r 58 LNIK-TGGCPENCGYCNQSVHN--KSKLKASKLINVDQVLKEAKNAKE--NGATRYCMGAAWREPKERDLSIIVDMIKGV 132 (328) Q Consensus 58 in~~-TN~C~~~C~fCaf~~~~--~~~~~~~~~~~~Eei~~~a~~~~~--~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i 132 (328) T Consensus 109 iqVRp~tgCnlnCIfCSVdeGp~SrtR~~d-y~Vd~eyLl~w~~kVa~~KgkglEaHlDGqGEP~lYP~l~~lVqalk~~ 187 (414) T COG2100 109 IQVRPSTGCNLNCIFCSVDEGPYSRTRKLD-YVVDPEYLLEWFEKVARFKGKGLEAHLDGQGEPLLYPHLVDLVQALKEH 187 (414) T ss_pred EEECCCCCCCCEEEEEECCCCCCCCEECCC-EEECHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHCC T ss_conf 996477664320589852578643300256-1756899999999999640787278753788875453399999997438 Q ss_pred CCCC-CCEEEECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCC--CCCHHHHHHHHHHHHHCCCCCCCEEEECCC Q ss_conf 1368-83241025699999998741576069751343-7777320588--889899999999999879855770786689 Q gi|254780485|r 133 KSLG-LETCMTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTT--THTFEDRLQTLENVRKSGIKVCCGGILGLG 208 (328) Q Consensus 133 ~~~~-~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~--~~~~~~~l~~~~~a~~~G~~~~sg~l~G~g 208 (328) T Consensus 188 ~~v~vVSmQTng~~L~~~lv~eLeeAGLdRiNlSv~aLDpk~Ak~L~G~~dYdv~kvle~aE~i~~a~idvlIaPv~lPG 267 (414) T COG2100 188 KGVEVVSMQTNGVLLSKKLVDELEEAGLDRINLSVDALDPKLAKMLAGRKDYDVKKVLEVAEYIANAGIDVLIAPVWLPG 267 (414) T ss_pred CCCEEEEEEECCEECCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCC T ss_conf 98428998507644459999999970875588620237988987742840117899999999998679888983144278 Q ss_pred CCHHHHHHHHHHHHHCCCCC--CEEECCCEEECCCCCCC-CCCCCCHHHHHHHHHHHH Q ss_conf 89999999999997408888--60205411204874124-456879899999999999 Q gi|254780485|r 209 EMIDDRIDMLLTLANLSTPP--ESIPINLLIPIPGSKFE-ENKKVDPIEHVRIISVAR 263 (328) Q Consensus 209 Et~eeri~~l~~lr~l~~~~--~~v~~~~~~p~~gt~l~-~~~~~~~~e~lr~iAi~R 263 (328) T Consensus 268 ~ND~E~~~iIe~A~~iGaGkk~p~lgiQkyipyk~GRkp~~~k~~~fkeFYrwLrelE 325 (414) T COG2100 268 VNDDEMPKIIEWAREIGAGKKWPPLGIQKYIPYKFGRKPVIAKVWPFKEFYRWLRELE 325 (414) T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH T ss_conf 6817789999999984888779985307755402068863035575999999999999 |
|
| >TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme; InterPro: IPR006467 This clade of sequences is closely related to MiaB, a modifier of isopentenylated adenosine-37 of certain eukaryotic and bacterial tRNAs (see IPR006463 from INTERPRO) | Back alignment and domain information |
|---|
Probab=99.12 E-value=8e-09 Score=78.78 Aligned_cols=181 Identities=15% Similarity=0.249 Sum_probs=131.5 Q ss_pred CCCCCCCCCCCCC--CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCC---CC-CC---CCCHHHHHHHHHH- Q ss_conf 7868342321243--3547775641000685799999999996498389973036---88-87---4428999998876- Q gi|254780485|r 62 TGGCPENCGYCNQ--SVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAW---RE-PK---ERDLSIIVDMIKG- 131 (328) Q Consensus 62 TN~C~~~C~fCaf--~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~---~~-~~---~~~~~~~~e~i~~- 131 (328) T Consensus 217 QdGCn~~CsyC~IP~~RGt-----~~RS~~~e~~~~~v~~Lv~~gy~EvVLTGvnlg~Yg~d~~~~g~~L~~Ll~~i~~q 291 (492) T TIGR01579 217 QDGCNKFCSYCIIPFARGT-----RSRSVPLEKILEQVKELVAKGYKEVVLTGVNLGSYGDDLGENGSSLAKLLEQILKQ 291 (492) T ss_pred ECCCCCCCCCCCCCCCCCC-----CCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHH T ss_conf 7588988441014033789-----76416678999999999737755999840014445688876676089999999864 Q ss_pred HCCC-CCCE-EEECCCCCHHHHHHHHC-C-CCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHC--CCCCCCEEE Q ss_conf 2136-8832-41025699999998741-5-76069751343-777732058888989999999999987--985577078 Q gi|254780485|r 132 VKSL-GLET-CMTLGMLSFEQAQILSK-A-GLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKS--GIKVCCGGI 204 (328) Q Consensus 132 i~~~-~~~i-~~~~g~~~~~~~~~Lk~-a-G~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~--G~~~~sg~l 204 (328) T Consensus 292 ~~g~~RiRlSS~~p~~~~~~l~~l~~s~~~l~PHlHlsLQSGsd~vLkrM~R~Y~r~~~~~~v~~lr~~~p~~~~gtD~I 371 (492) T TIGR01579 292 IPGIERIRLSSIDPEDIDEELLELIKSEKKLCPHLHLSLQSGSDRVLKRMRRKYTRDDFLKLVQKLRSVRPDYAFGTDVI 371 (492) T ss_pred CCCCEEEEECCCCHHHHCHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEE T ss_conf 68834676325776550489999973476416320000222773798424878876899999999985077630376037 Q ss_pred ECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCC Q ss_conf 668-989999999999997408888602054112048741244568 Q gi|254780485|r 205 LGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKK 249 (328) Q Consensus 205 ~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~ 249 (328) T Consensus 372 VGFP~E~eedFq~t~~~~~~~~~~--~~HiFpyS~R~~T~A~~m~~ 415 (492) T TIGR01579 372 VGFPGESEEDFQETLRIVKEIEFS--GLHIFPYSARPGTPASAMDD 415 (492) T ss_pred EECCCCCHHHHHHHHHHHHHCCCC--EEEEECCCCCCCCCCCCCCC T ss_conf 408889889999999998526602--13354268843281204787 |
Sequence alignments suggest that these sequences perform the same chemical transformation as MiaB, perhaps on a different (or differently modified) tRNA base substrate. This clade represents a subfamily that spans low GC Gram-positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium , , .. |
| >COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.3e-07 Score=70.66 Aligned_cols=210 Identities=19% Similarity=0.247 Sum_probs=139.4 Q ss_pred EEEECCCCCCC-CCCCCCCCCCCCCCCC------------CCCCCCHHHHHHHHHHHHHCCCE----EEEEECCCCCCCC Q ss_conf 64530786834-2321243354777564------------10006857999999999964983----8997303688874 Q gi|254780485|r 57 LLNIKTGGCPE-NCGYCNQSVHNKSKLK------------ASKLINVDQVLKEAKNAKENGAT----RYCMGAAWREPKE 119 (328) Q Consensus 57 ~in~~TN~C~~-~C~fCaf~~~~~~~~~------------~~~~~~~Eei~~~a~~~~~~G~~----~~~l~~~~~~~~~ 119 (328) T Consensus 69 aVmt~p~~CPHg~CvfCpgg~~~~spQSytg~ep~~~R~~~~~ydpY~q~~~Rl~qL~~igh~~~KvEliimGGTFt--a 146 (515) T COG1243 69 AVMTSPHGCPHGRCVFCPGGPDKDSPQSYTGEEPAALRAIKNRYDPYEQVRARLKQLETIGHTSDKVELIIMGGTFT--A 146 (515) T ss_pred EEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCC--C T ss_conf 98438889999807758997777888554788842667776057918888888999997399864289999626566--8 Q ss_pred CCHHHHHHHHHH----HC-------------C------CCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHC Q ss_conf 428999998876----21-------------3------6883241025699999998741576069751343-7777320 Q gi|254780485|r 120 RDLSIIVDMIKG----VK-------------S------LGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPH 175 (328) Q Consensus 120 ~~~~~~~e~i~~----i~-------------~------~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~ 175 (328) T Consensus 147 ~~~~yqe~Fi~~~~~amn~f~~~le~a~~~ne~~~~r~vgitiETRPD~~~ee~ld~mlkyG~TrVELGVQSiyd~Vl~~ 226 (515) T COG1243 147 LSLEYQEWFLKVALKAMNDFGYDLEEAQRKNETAELRCVGITIETRPDYIDEEHLDQMLKYGVTRVELGVQSIYDDVLER 226 (515) T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCCEEEEEEEEHHHHHHHH T ss_conf 88789999999999865312204889887400023422679983484100779999999638838998326579999998 Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCEEEECC-CCCHHHHHHHHHHHHHCC-CCCCEEECCCEEECCCCCCCC------C Q ss_conf 58888989999999999987985577078668-989999999999997408-888602054112048741244------5 Q gi|254780485|r 176 VTTTHTFEDRLQTLENVRKSGIKVCCGGILGL-GEMIDDRIDMLLTLANLS-TPPESIPINLLIPIPGSKFEE------N 247 (328) Q Consensus 176 ~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~-gEt~eeri~~l~~lr~l~-~~~~~v~~~~~~p~~gt~l~~------~ 247 (328) T Consensus 227 ~~RGHtvedv~~a~rLlKd~GfKv~~HiMpGLPgs~~erDl~~f~~~f~~p~f~PDmlKIYPtLVi~gT~Ly~mwk~G~Y 306 (515) T COG1243 227 TKRGHTVEDVVEATRLLKDAGFKVGYHIMPGLPGSDFERDLESFREIFEDPRFRPDMLKIYPTLVIEGTELYEMWKRGLY 306 (515) T ss_pred HCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCHHHHHHHCCCC T ss_conf 33896199999999999851837999965899998867789999999718888987578840279878269999970898 Q ss_pred CCCCHHHHHHHHHHHHHHCCC Q ss_conf 687989999999999996868 Q gi|254780485|r 248 KKVDPIEHVRIISVARILMPK 268 (328) Q Consensus 248 ~~~~~~e~lr~iAi~RL~lP~ 268 (328) T Consensus 307 kpy~~EEaVeli~~i~~~~p~ 327 (515) T COG1243 307 KPYTTEEAVELIVEIYRLEPK 327 (515) T ss_pred CCCCHHHHHHHHHHHHHHCCC T ss_conf 779889999999999986677 |
|
| >COG0535 Predicted Fe-S oxidoreductases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.9e-07 Score=69.51 Aligned_cols=173 Identities=18% Similarity=0.288 Sum_probs=110.2 Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCHHHHHHHHHHH Q ss_conf 998645307868342321243354777564100068579999999999649-8389973036888744289999988762 Q gi|254780485|r 54 LSKLLNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENG-ATRYCMGAAWREPKERDLSIIVDMIKGV 132 (328) Q Consensus 54 ~~~~in~~TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G-~~~~~l~~~~~~~~~~~~~~~~e~i~~i 132 (328) T Consensus 19 ~~~~~~~-t~~Cnl~C~~C~~~~~~~----~~~el~~~~~~~~~~~~~~~g~~~~v-~~~gGEPll~---~~~~ei~~~~ 89 (347) T COG0535 19 LVVGIEL-TNRCNLACKHCYAEAGKK----LPGELSTEEDLRVIDELAELGEIPVV-IFTGGEPLLR---PDLLEIVEYA 89 (347) T ss_pred CEEEEEC-CCCCCCCCCCCCCCCCCC----CCCCCCHHHHHHHHHHHHHCCCEEEE-EECCCCCEEC---CCHHHHHHHH T ss_conf 3799855-887687499877242677----67735687878999999871884499-8079873334---5799999998 Q ss_pred CCC-CCCEEEEC-C-CCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCC-CCCHHHHHHHHHHHHHCCCCCC-CEEEEC Q ss_conf 136-88324102-5-699999998741576069751343-7777320588-8898999999999998798557-707866 Q gi|254780485|r 133 KSL-GLETCMTL-G-MLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTT-THTFEDRLQTLENVRKSGIKVC-CGGILG 206 (328) Q Consensus 133 ~~~-~~~i~~~~-g-~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~-~~~~~~~l~~~~~a~~~G~~~~-sg~l~G 206 (328) T Consensus 90 ~~~~~~~~~~~TnG~~~~~~~~~~l~~~g~~~v~iSld~~~~e~hd~~rg~~g~~~~~~~~i~~~~~~g~~~~~~~~v~~ 169 (347) T COG0535 90 RKKGGIRVSLSTNGTLLTEEVLEKLKEAGLDYVSISLDGLDPETHDPIRGVKGVFKRAVEAIKNLKEAGILVVINTTVTK 169 (347) T ss_pred HHCCCEEEEEECCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEEEEEC T ss_conf 51387289882687545388999887668876999974588532140027762699999999999873970489999956 Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCEEECCCEEEC Q ss_conf 898999999999999740888860205411204 Q gi|254780485|r 207 LGEMIDDRIDMLLTLANLSTPPESIPINLLIPI 239 (328) Q Consensus 207 ~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~ 239 (328) T Consensus 170 --~n~~~l~~~~~~~~~~g~~--~~~~~~~~~~ 198 (347) T COG0535 170 --INYDELPEIADLAAELGVD--ELNVFPLIPV 198 (347) T ss_pred --CCHHHHHHHHHHHHHCCCC--CEEEEEEEEC T ss_conf --6346589999999865976--0576764431 |
|
| >COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=8.7e-08 Score=71.85 Aligned_cols=190 Identities=14% Similarity=0.174 Sum_probs=119.4 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCHHHHHHHHHHHCCC---CC Q ss_conf 7868342321243354777564100068579999999999649-8389973036888744289999988762136---88 Q gi|254780485|r 62 TGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENG-ATRYCMGAAWREPKERDLSIIVDMIKGVKSL---GL 137 (328) Q Consensus 62 TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G-~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~---~~ 137 (328) T Consensus 61 TN~CiyDC~YCINr~s~~--~pra-~ftp~Eiv~ltlnfYrRnYIeGLFLSSGvi~~~DyTmE~mi~var~LRle~~f~G 137 (404) T COG4277 61 TNFCIYDCAYCINRSSND--TPRA-RFTPEEIVDLTLNFYRRNYIEGLFLSSGVIKNPDYTMEEMIEVARILRLEHKFRG 137 (404) T ss_pred HHHHHHHHHHHHCCCCCC--CCCC-CCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCC T ss_conf 625777638875555578--8543-0589999999998988742433000246336861479999999998832045575 Q ss_pred CEEEECCCCCHHHHHHHHCCC--CCEEEEECCCC-HHHHHCCCCCCCHHHHHHHHHHHHH---------C------CC-C Q ss_conf 324102569999999874157--60697513437-7773205888898999999999998---------7------98-5 Q gi|254780485|r 138 ETCMTLGMLSFEQAQILSKAG--LDYYNHNIDTS-ERFYPHVTTTHTFEDRLQTLENVRK---------S------GI-K 198 (328) Q Consensus 138 ~i~~~~g~~~~~~~~~Lk~aG--~~~~~~~let~-~~~~~~~~~~~~~~~~l~~~~~a~~---------~------G~-~ 198 (328) T Consensus 138 YIHlK~IP--gas~~li~eaglyadRvSiNIElp~~~~lk~lap~K~p~dI~r~Mg~ir~~i~e~~e~~~r~r~tp~fap 215 (404) T COG4277 138 YIHLKIIP--GASPDLIKEAGLYADRVSINIELPTDDGLKLLAPEKDPTDILRSMGWIRLKILENAEDKRRKRHTPEFAP 215 (404) T ss_pred EEEEEECC--CCCHHHHHHHHHHHHEEEEEEECCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCC T ss_conf 79987569--9998999998653410577674488644666188888378888989999877651550222104723367 Q ss_pred --CCCEEEECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCCHHHHHH Q ss_conf --577078668-98999999999999740888860205411204874124456879899999 Q gi|254780485|r 199 --VCCGGILGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEHVR 257 (328) Q Consensus 199 --~~sg~l~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr 257 (328) T Consensus 216 aGQSTQmivGA~~~tD~~Ilsrs~~ly~~y~-lkRVyySaf~Pv~~s~~lp~~~pplmRehR 276 (404) T COG4277 216 AGQSTQMIVGADGETDEDILSRSENLYGRYS-LKRVYYSAFSPVPSSPLLPDDKPPLMREHR 276 (404) T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHCCC-EEEEEEECCCCCCCCCCCCCCCCCHHHHHH T ss_conf 7873278871588744889988887753243-148986213336889888666785367777 |
|
| >TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E; InterPro: IPR011843 This entry describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ) | Back alignment and domain information |
|---|
Probab=98.88 E-value=2e-08 Score=76.15 Aligned_cols=196 Identities=18% Similarity=0.248 Sum_probs=123.1 Q ss_pred EEECCCCCCCCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCC Q ss_conf 453078683423212433547775-6410006857999999999964983899730368887442899999887621368 Q gi|254780485|r 58 LNIKTGGCPENCGYCNQSVHNKSK-LKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLG 136 (328) Q Consensus 58 in~~TN~C~~~C~fCaf~~~~~~~-~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~ 136 (328) T Consensus 11 aEL-ThRCPL~CPYCS----NPLel~R~~~EL~T~~W~~Vl~qAa~lGvlqlHf-SGGEP~aR~DL~---eLv~~A~~LG 81 (363) T TIGR02109 11 AEL-THRCPLQCPYCS----NPLELARRKAELTTEEWTDVLTQAAELGVLQLHF-SGGEPLARPDLV---ELVAHARRLG 81 (363) T ss_pred HHH-HHCCCCCCCCCC----CCHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEC-CCCCCCCCCCHH---HHHHHHHHCC T ss_conf 998-725888777989----7068885114688889999999998539067513-077666335779---9999997758 Q ss_pred C--CEEEECCCCCHHHHHHHHCCCCCEEEEEC-CCCHHHHHCCCC-CCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHH Q ss_conf 8--32410256999999987415760697513-437777320588-8898999999999998798557707866898999 Q gi|254780485|r 137 L--ETCMTLGMLSFEQAQILSKAGLDYYNHNI-DTSERFYPHVTT-THTFEDRLQTLENVRKSGIKVCCGGILGLGEMID 212 (328) Q Consensus 137 ~--~i~~~~g~~~~~~~~~Lk~aG~~~~~~~l-et~~~~~~~~~~-~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~e 212 (328) T Consensus 82 lYtNLITSGvGLt~~rl~~L~~aGLDHvQlSfQ~vd~~~a~~iaG~k~A~~~Kl~~A~~v~~~g~PltLN~V~-HR~Ni~ 160 (363) T TIGR02109 82 LYTNLITSGVGLTEARLDALADAGLDHVQLSFQGVDEALADRIAGLKNAFEQKLAVARAVKAAGLPLTLNFVL-HRHNID 160 (363) T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEHCC-CCCHHH T ss_conf 7014677634567999999975798578876414787888641250258999999999999618981760200-242021 Q ss_pred HHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCC--CCCCH---HHHHHHHHHHHHHC Q ss_conf 99999999974088886020541120487412445--68798---99999999999968 Q gi|254780485|r 213 DRIDMLLTLANLSTPPESIPINLLIPIPGSKFEEN--KKVDP---IEHVRIISVARILM 266 (328) Q Consensus 213 eri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~--~~~~~---~e~lr~iAi~RL~l 266 (328) T Consensus 161 ~i~~~i~La~~L~AdrvE~A~--~QyYGWA-~~NR~aLlPt~~Ql~~a~r~V~~aRer~ 216 (363) T TIGR02109 161 QIPEIIELAIELGADRVELAT--TQYYGWA-LLNRAALLPTREQLEEATRIVEEARERL 216 (363) T ss_pred HHHHHHHHHHHCCCCEEEEEE--ECCHHHH-HHHHHHCCCCHHHHHHHHHHHHHHHHHH T ss_conf 367899999863898488874--0202256-7745424898899999999999999998 |
PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.; GO: 0051539 4 iron 4 sulfur cluster binding, 0018189 pyrroloquinoline quinone biosynthetic process. |
| >PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.3e-06 Score=61.28 Aligned_cols=194 Identities=14% Similarity=0.172 Sum_probs=125.9 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH---HCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCC Q ss_conf 7868342321243354777564100068579999999999---6498389973036888744289999988762136883 Q gi|254780485|r 62 TGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAK---ENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLE 138 (328) Q Consensus 62 TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~---~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~ 138 (328) T Consensus 27 l~GC~lrC~~ChNpet~~--~~~g~~~t~~el~~~i~~~~~f~~~sgGGVT~-SGGE-P-llq~ef~~~l~~~~k~~gi~ 101 (246) T PRK11145 27 MQGCLMRCLYCHNRDTWD--THGGKEVTVEELMKEVVTYRHFMNASGGGVTA-SGGE-A-ILQAEFVRDWFRACKKEGIH 101 (246) T ss_pred ECCCCCCCCCCCCHHHHC--CCCCEECCHHHHHHHHHHHHHHHHHCCCEEEE-ECCC-E-ECCHHHHHHHHHHHHHCCCC T ss_conf 068778899897967848--67998755999999999879998605963898-6995-1-26899999999999887998 Q ss_pred EEE-ECCCCC--HHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEE--EECCCCCHH Q ss_conf 241-025699--999998741576069751343-77773205888898999999999998798557707--866898999 Q gi|254780485|r 139 TCM-TLGMLS--FEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGG--ILGLGEMID 212 (328) Q Consensus 139 i~~-~~g~~~--~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~--l~G~gEt~e 212 (328) T Consensus 102 taidTnG~~~~~~~~~~~ll~~-~D~vl~DiK~~d~~~h~~~-tG~~n~~iL~nl~~l~~~~~~~~iR~pvIPg~nD~~e 179 (246) T PRK11145 102 TCLDTNGFVRRYDPVIDELLDV-TDLVMLDLKQMNDEIHQNL-VGVSNHRTLEFARYLAKRNQKTWIRYVVVPGWTDDDD 179 (246) T ss_pred EEEECCCCCCCCHHHHHHHHHH-CCEEEECCCCCCHHHHHHH-HCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHH T ss_conf 9998999987557999998863-2345764666898999999-8889189999999999789978998867799889999 Q ss_pred HHHHHHHHHHHCCCCCCEEECCCEEE---C------CCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 99999999974088886020541120---4------874124456879899999999999 Q gi|254780485|r 213 DRIDMLLTLANLSTPPESIPINLLIP---I------PGSKFEENKKVDPIEHVRIISVAR 263 (328) Q Consensus 213 eri~~l~~lr~l~~~~~~v~~~~~~p---~------~gt~l~~~~~~~~~e~lr~iAi~R 263 (328) T Consensus 180 ~i~~~a~fl~~l~~-v~~v~lLPyH~~G~~Ky~~lg~~Y~~~~~~~~~~e~l~~~~~i~~ 238 (246) T PRK11145 180 SAHRLGEFIKDMGN-IEKVELLPYHELGKHKWEAMGEEYKLDGVKPPSKETMERIKGILE 238 (246) T ss_pred HHHHHHHHHHHCCC-CCEEEECCCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH T ss_conf 99999999997699-763665788756654799839998888989979999999999999 |
|
| >COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.8e-06 Score=63.11 Aligned_cols=194 Identities=19% Similarity=0.286 Sum_probs=125.2 Q ss_pred CCCCCCCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEE Q ss_conf 7868342321243354777-564100068579999999999649838997303688874428999998876213688324 Q gi|254780485|r 62 TGGCPENCGYCNQSVHNKS-KLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETC 140 (328) Q Consensus 62 TN~C~~~C~fCaf~~~~~~-~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~ 140 (328) T Consensus 42 ~~GCnlrC~~C~N~~~~~~~~~~~~~~~~~e~l~~~~~~--~~~~~gvt~-SGGE-P~-~q~e~~~~~~~~ake~Gl~~~ 116 (260) T COG1180 42 LQGCNLRCPYCQNPEISQRGREVSGEEVSPEVLVDKAFY--SESGGGVTF-SGGE-PT-LQAEFALDLLRAAKERGLHVA 116 (260) T ss_pred ECCCCCCCCCCCCHHHHHCCCCCCHHHCCHHHHHHHHHH--CCCCCEEEE-ECCH-HH-HHHHHHHHHHHHHHHCCCEEE T ss_conf 789899899897946760656565645789899998743--169988999-8960-44-439999999999998799089 Q ss_pred E-ECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEE--CCCCCHHHHHH Q ss_conf 1-025699999998741576069751343-7777320588889899999999999879855770786--68989999999 Q gi|254780485|r 141 M-TLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGIL--GLGEMIDDRID 216 (328) Q Consensus 141 ~-~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~--G~gEt~eeri~ 216 (328) T Consensus 117 l~TnG~~~~~~~~~l~~~-~D~v~~DlK~~~~~~yr~~t-g~~~~~vl~~~~~l~~~g~~ve~r~lviPg~~d~~e~i~~ 194 (260) T COG1180 117 LDTNGFLPPEALEELLPL-LDAVLLDLKAFDDELYRKLT-GADNEPVLENLELLADLGVHVEIRTLVIPGYNDDEEEIRE 194 (260) T ss_pred EECCCCCCHHHHHHHHHH-CCCEEEECCCCCHHHHHHHH-CCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHH T ss_conf 976899882689999974-23148840668878889875-6871688999999861798399988733898899999999 Q ss_pred HHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 9999974088886020541120487412445687989999999999996 Q gi|254780485|r 217 MLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARIL 265 (328) Q Consensus 217 ~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~ 265 (328) T Consensus 195 i~~~i~~~~~---~~p~~~l~fhp~~~~~~~p~~~~~~le~~~~~a~~~ 240 (260) T COG1180 195 LAEFIADLGP---EIPIHLLRFHPDYKLKDLPPTPVETLEEAKKLAKEE 240 (260) T ss_pred HHHHHHHCCC---CCCEEEECCCCCHHCCCCCCCCHHHHHHHHHHHHHH T ss_conf 9999973086---665587566874011357999288899888778999 |
|
| >COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.2e-05 Score=57.52 Aligned_cols=191 Identities=15% Similarity=0.158 Sum_probs=114.4 Q ss_pred EEEEC-CCC-CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEEECCCCCCCCCCHHHHHHHHH--- Q ss_conf 64530-786-834232124335477756410006857999999999964-983899730368887442899999887--- Q gi|254780485|r 57 LLNIK-TGG-CPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKEN-GATRYCMGAAWREPKERDLSIIVDMIK--- 130 (328) Q Consensus 57 ~in~~-TN~-C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~-G~~~~~l~~~~~~~~~~~~~~~~e~i~--- 130 (328) T Consensus 8 ~~~~kpt~~~CNL~C~YC~~~~~~~~----~~~Ms~etle~~i~~~~~~~~~~~v~~~w~GGEPlL~~~~f~~~~~~l~~ 83 (378) T COG0641 8 HVMAKPTGFECNLDCKYCFYLEKESL----QRIMSDETLEEYVRQYIAASNGDKVTFTWQGGEPLLAGLDFYRKAVALQQ 83 (378) T ss_pred EEEECCCCCCCCCCCCEECCCCCCCC----CCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHH T ss_conf 34546666766998885076177777----78789999999999999608987479999788640340879999999999 Q ss_pred HHCCCCCCEE----EECCCCCHHHHHHHHCCCCCEEEEECCCCHHHHHCCC----CCCCHHHHHHHHHHHHHCCCCCCCE Q ss_conf 6213688324----1025699999998741576069751343777732058----8889899999999999879855770 Q gi|254780485|r 131 GVKSLGLETC----MTLGMLSFEQAQILSKAGLDYYNHNIDTSERFYPHVT----TTHTFEDRLQTLENVRKSGIKVCCG 202 (328) Q Consensus 131 ~i~~~~~~i~----~~~g~~~~~~~~~Lk~aG~~~~~~~let~~~~~~~~~----~~~~~~~~l~~~~~a~~~G~~~~sg 202 (328) T Consensus 84 k~~~-~~~i~~siqTNg~LL~~e~~e~l~~~~~-~IgISiDGp~eihD~~R~~~~GkgTfd~i~~~i~~L~~~~v~~~~~ 161 (378) T COG0641 84 KYAN-GKTISNALQTNGTLLNDEWAEFLAEHDF-LIGISIDGPEEIHDKYRVTKSGKGTFDRVMKGLELLQAHGVDFNTL 161 (378) T ss_pred HHCC-CCCEEEEEEECCCCCCHHHHHHHHHCCC-EEEEECCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE T ss_conf 8605-8825789987603257999999985296-6999666817761110357899856999999999999758846999 Q ss_pred EEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCC--CCCCCCCCHHHHHH Q ss_conf 78668989999999999997408888602054112048741--24456879899999 Q gi|254780485|r 203 GILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSK--FEENKKVDPIEHVR 257 (328) Q Consensus 203 ~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~--l~~~~~~~~~e~lr 257 (328) T Consensus 162 ~vv~-~~n~~~~~ei~~~l~~~g~--~~i~fip~~~~~~~~~~~~-~~~~~~~~~~~ 214 (378) T COG0641 162 TVVN-RQNVLHPEEIYHFLKSEGS--KFIQFIPLVESDNRGDSLL-EFSVTAEEYGQ 214 (378) T ss_pred EEEC-HHHHHCHHHHHHHHHHCCC--CEEEEEECCCCCCCCCCCC-CCCCCHHHHHH T ss_conf 9976-4453079999999997376--6389885116888775322-12346667999 |
|
| >COG0731 Fe-S oxidoreductases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.5e-06 Score=60.39 Aligned_cols=169 Identities=18% Similarity=0.266 Sum_probs=106.0 Q ss_pred ECCC-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC------CCEEEEEECCCCCCCCCCHHHHHHHHHHH Q ss_conf 3078-6834232124335477756410006857999999999964------98389973036888744289999988762 Q gi|254780485|r 60 IKTG-GCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKEN------GATRYCMGAAWREPKERDLSIIVDMIKGV 132 (328) Q Consensus 60 ~~TN-~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~------G~~~~~l~~~~~~~~~~~~~~~~e~i~~i 132 (328) T Consensus 28 tP~~~~Cs~~CvyC~~G~~~~~~~~~~efi~~~~I~~~~~~~~~~~g~ea~~pd~vtis~~GEPTLy~~L---~elI~~~ 104 (296) T COG0731 28 TPSKKWCSYNCVYCWRGRTKKGTPERPEFIVEESILEELKLLLGYKGDEATEPDHVTISLSGEPTLYPNL---GELIEEI 104 (296) T ss_pred CCCHHHHCCCCEEEECCCCCCCCCCCCCEECHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCH---HHHHHHH T ss_conf 6606543577758966677777777872415899999999984225665678877999379883346488---9999999 Q ss_pred CCCC--CCEEEECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCC---CCHHHHHHHHHHHHHC--CCCCCCEEE Q ss_conf 1368--83241025699999998741576069751343-77773205888---8989999999999987--985577078 Q gi|254780485|r 133 KSLG--LETCMTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTT---HTFEDRLQTLENVRKS--GIKVCCGGI 204 (328) Q Consensus 133 ~~~~--~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~---~~~~~~l~~~~~a~~~--G~~~~sg~l 204 (328) T Consensus 105 k~~g~~~tflvTNgsl-pdv~~~L~--~~dql~~sLdA~~~~~~~~InRP~~~~~~e~ile~L~~~~~~~~~~~vir~tl 181 (296) T COG0731 105 KKRGKKTTFLVTNGSL-PDVLEELK--LPDQLYVSLDAPDEKTFRRINRPHKKDSWEKILEGLEIFRSEYKGRTVIRTTL 181 (296) T ss_pred HHCCCCEEEEEECCCH-HHHHHHHC--CCCEEEEEECCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEE T ss_conf 8607950899938976-99998740--58879998146888899983488874529999999997401278748999998 Q ss_pred E-CCCCCHHHHHHHHHHHHHCCCCCCEEECCCE Q ss_conf 6-6898999999999999740888860205411 Q gi|254780485|r 205 L-GLGEMIDDRIDMLLTLANLSTPPESIPINLL 236 (328) Q Consensus 205 ~-G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~ 236 (328) T Consensus 182 vkg~N~~~e~~~~~a~ll~~~~--Pd~velk~~ 212 (296) T COG0731 182 VKGINDDEEELEEYAELLERIN--PDFVELKTY 212 (296) T ss_pred ECCCCCCHHHHHHHHHHHHHCC--CCEEEEECC T ss_conf 5264687088999999998539--976998347 |
|
| >TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme; InterPro: IPR012838 Members of this family are iron-sulphur proteins with a radical-SAM domain | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.2e-06 Score=60.58 Aligned_cols=193 Identities=22% Similarity=0.331 Sum_probs=132.1 Q ss_pred CCCCCCCCCCCCCCCCCCCCCC-CC-CCCCHHHHHHHHHHHHH----C-CCEEEEEECCCCCCCCCCHHHHHHHHHHHCC Q ss_conf 7868342321243354777564-10-00685799999999996----4-9838997303688874428999998876213 Q gi|254780485|r 62 TGGCPENCGYCNQSVHNKSKLK-AS-KLINVDQVLKEAKNAKE----N-GATRYCMGAAWREPKERDLSIIVDMIKGVKS 134 (328) Q Consensus 62 TN~C~~~C~fCaf~~~~~~~~~-~~-~~~~~Eei~~~a~~~~~----~-G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~ 134 (328) T Consensus 22 mqGC~lRC~YChNP---DTW~~~~~G~~~t~~el~~e~~~yk~f~~~sGGGvT---~SGGEPl--lQ~~F~~~~f~~cK~ 93 (243) T TIGR02493 22 MQGCPLRCQYCHNP---DTWDLKKGGTEVTVEELIKEVKSYKDFFKASGGGVT---VSGGEPL--LQPEFVLELFKACKK 93 (243) T ss_pred ECCHHHHHHHCCCC---CCCCCCCCCCEECHHHHHHHHHHHHHHHHCCCCCEE---EECCCCC--CCHHHHHHHHHHHHH T ss_conf 43536775305898---743358878120789999999989988720799589---8689502--016999999999998 Q ss_pred -CCCCEEE-ECC----CCC--HHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCE-EE Q ss_conf -6883241-025----699--999998741576069751343-7777320588889899999999999879855770-78 Q gi|254780485|r 135 -LGLETCM-TLG----MLS--FEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCG-GI 204 (328) Q Consensus 135 -~~~~i~~-~~g----~~~--~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg-~l 204 (328) T Consensus 94 ~~GiHTclDT~GGCftf~~~~~~~~~~lLe~-TDLvLLDiK~~~~~~y~~LTg~~~~~ptl~Fa~~L~~~~kP~WiRYVl 172 (243) T TIGR02493 94 ELGIHTCLDTSGGCFTFLGGFTEAADELLEV-TDLVLLDIKHIDPEKYKKLTGVKSLEPTLEFAKYLAKRNKPIWIRYVL 172 (243) T ss_pred HCCCEEEEECCCCHHHHHCCHHHHHHHHHHC-CCEEEEECCCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEE T ss_conf 5698388744883433412124899975100-587886234368124000145677524589999999658988999986 Q ss_pred E-CCCCCHHHHHHHHHHHHHCCCCCCEE---ECCCEEECC------CCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 6-68989999999999997408888602---054112048------74124456879899999999999 Q gi|254780485|r 205 L-GLGEMIDDRIDMLLTLANLSTPPESI---PINLLIPIP------GSKFEENKKVDPIEHVRIISVAR 263 (328) Q Consensus 205 ~-G~gEt~eeri~~l~~lr~l~~~~~~v---~~~~~~p~~------gt~l~~~~~~~~~e~lr~iAi~R 263 (328) T Consensus 173 VPGyTD~~eDi~~l~~fv~~~~~averVe~LPYH~LG~~KWe~~g~~Y~L~~~~~p~~e~~~~~~~~~~ 241 (243) T TIGR02493 173 VPGYTDSEEDIEALAEFVKTLPNAVERVEVLPYHQLGVYKWEALGIEYKLEGVKPPNKEQLERIKEIFK 241 (243) T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH T ss_conf 588779989999999999746992799865688602110387668975888889879899999999973 |
A single glycine residue in 2.3.1.54 from EC, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of a proton from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue .; GO: 0043365 [formate-C-acetyltransferase]-activating enzyme activity. |
| >TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB; InterPro: IPR005980 NifB is a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.3e-06 Score=61.31 Aligned_cols=196 Identities=20% Similarity=0.286 Sum_probs=133.1 Q ss_pred EEEEEEECCCCCCCCCCCCC--CCCCCCC-CCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEC-CCCCCCCCCHHHHHHHH Q ss_conf 99864530786834232124--3354777-56410006857999999999964983899730-36888744289999988 Q gi|254780485|r 54 LSKLLNIKTGGCPENCGYCN--QSVHNKS-KLKASKLINVDQVLKEAKNAKENGATRYCMGA-AWREPKERDLSIIVDMI 129 (328) Q Consensus 54 ~~~~in~~TN~C~~~C~fCa--f~~~~~~-~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~-~~~~~~~~~~~~~~e~i 129 (328) T Consensus 24 ARMH~AV-ApACNiQCNYCNRKyDC~NESRPGV~S~~LtP~qA~~k~~~VA~~-i~QLSVvGIAGPGDpLan~~~Tf~Tl 101 (461) T TIGR01290 24 ARMHLAV-APACNIQCNYCNRKYDCANESRPGVVSELLTPEQALAKVKAVAAE-IPQLSVVGIAGPGDPLANIKKTFQTL 101 (461) T ss_pred HHCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCCCCCCCHHHH T ss_conf 1113421-443345545568641667888876201346848999999999850-67531563257886245750008999 Q ss_pred HHHCC--CCCCEEEE-CCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHH---------------HHHHHHH Q ss_conf 76213--68832410-25699999998741576069751343-777732058888989---------------9999999 Q gi|254780485|r 130 KGVKS--LGLETCMT-LGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFE---------------DRLQTLE 190 (328) Q Consensus 130 ~~i~~--~~~~i~~~-~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~---------------~~l~~~~ 190 (328) T Consensus 102 ~~v~~~~PDvklCLSTNGL~LP~~vDrlvdlgvdHVTiTiN~iDP~vG~~IYpWv~y~G~RY~Gr~Aa~lL~erQl~G~~ 181 (461) T TIGR01290 102 ELVAREVPDVKLCLSTNGLALPEHVDRLVDLGVDHVTITINAIDPEVGEKIYPWVAYEGKRYTGREAAKLLIERQLEGLE 181 (461) T ss_pred HHHHHHCCCEEEECCCCCCCCHHHHHHHHHCCCCCEEEEECCCCHHHHCEECCCEEECCCCCCHHHHHHHHHHHHHHHHH T ss_conf 99985178214200126563134652464238881798831406355103065233267333548999998999999999 Q ss_pred HHHHCCC--CCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECC--CCCCCC--CCCCCHHHH Q ss_conf 9998798--5577078668989999999999997408888602054112048--741244--568798999 Q gi|254780485|r 191 NVRKSGI--KVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIP--GSKFEE--NKKVDPIEH 255 (328) Q Consensus 191 ~a~~~G~--~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~--gt~l~~--~~~~~~~e~ 255 (328) T Consensus 182 ~L~ergiL~KvNSvlIPGi--ND~HL~eVsk~vk~~GAfLHNv--mPLis~PeHGt~ygl~Gq~~P~~~el 248 (461) T TIGR01290 182 KLTERGILVKVNSVLIPGI--NDEHLVEVSKKVKELGAFLHNV--MPLISAPEHGTVYGLNGQRAPAPSEL 248 (461) T ss_pred HHHHCCCEEEECCEECCCC--CCHHHHHHHHHHHCCCCHHCCC--CCCEECCCCCCCCCCCCCCCCCHHHH T ss_conf 9973885488800643898--8178999877751046400054--42101489883116787888898999 |
Archaeal homologs lack most of the C-terminal region and are excluded from this model.; GO: 0009108 coenzyme biosynthetic process, 0009399 nitrogen fixation. |
| >KOG4355 consensus | Back alignment and domain information |
|---|
Probab=98.52 E-value=9.8e-06 Score=58.11 Aligned_cols=210 Identities=20% Similarity=0.328 Sum_probs=117.3 Q ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC----HHHHH-HH Q ss_conf 99864530786834232124335477756410006857999999999964983899730368887442----89999-98 Q gi|254780485|r 54 LSKLLNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERD----LSIIV-DM 128 (328) Q Consensus 54 ~~~~in~~TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~----~~~~~-e~ 128 (328) T Consensus 187 lieIi~int-gclgaCtyck-Tkharg~l~s---y~~dslvervrt~f~egv~eIwltsedTgaygrdig~slp~ll~kl 261 (547) T KOG4355 187 LIEIISINT-GCLGACTYCK-TKHARGLLAS---YPKDSLVERVRTSFEEGVCEIWLTSEDTGAYGRDIGKSLPKLLWKL 261 (547) T ss_pred CEEEEEECC-CCCCCCCCCC-CCCCCCCCCC---CCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH T ss_conf 658999624-5541115556-5012433254---7889999999998851747998124543035544300069999999 Q ss_pred HHHHCCC-CCCEEEECCCCCHHHHH----HHHCCCCCEEEEE-CCC-CHHHHHCCCCCCCHHHHHHHHHHHHHC--CCCC Q ss_conf 8762136-88324102569999999----8741576069751-343-777732058888989999999999987--9855 Q gi|254780485|r 129 IKGVKSL-GLETCMTLGMLSFEQAQ----ILSKAGLDYYNHN-IDT-SERFYPHVTTTHTFEDRLQTLENVRKS--GIKV 199 (328) Q Consensus 129 i~~i~~~-~~~i~~~~g~~~~~~~~----~Lk~aG~~~~~~~-let-~~~~~~~~~~~~~~~~~l~~~~~a~~~--G~~~ 199 (328) T Consensus 262 v~~iPe~cmlr~gmTnpP~ilehl~e~a~vlrhp~vYsflhvpvqsgsdsvl~emkreyc~~dfk~Vvd~LterVPgi~I 341 (547) T KOG4355 262 VEVIPESCMLRAGMTNPPYILEHLEEAAFVLRHPRVYSFLHVPVQSGSDSVLTEMKREYCNFDFKIVVDFLTERVPGITI 341 (547) T ss_pred HHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE T ss_conf 98653666443158788159988999998764870799983243357436888877787645678899888754798188 Q ss_pred CCEEEECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCCHHHH-HHHHHHHHHHC---CCCC Q ss_conf 77078668-989999999999997408888602054112048741244568798999-99999999968---6872 Q gi|254780485|r 200 CCGGILGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEH-VRIISVARILM---PKSR 270 (328) Q Consensus 200 ~sg~l~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~-lr~iAi~RL~l---P~~~ 270 (328) T Consensus 342 ATDiIcgFPtETdeDFeeTmeLv~kYK-FP-slfInQfyPRpGTPAAkmkki~a~~vkkRTk~ls~lF~sy~pYtd 415 (547) T KOG4355 342 ATDIICGFPTETDEDFEETMELVRKYK-FP-SLFINQFYPRPGTPAAKMKKIPAVEVKKRTKALSELFRSYTPYTD 415 (547) T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHCC-CC-HHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 621242488871677999999999716-85-403530479998817865224379999888999999874187655 |
|
| >COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.49 E-value=7.3e-05 Score=52.27 Aligned_cols=201 Identities=17% Similarity=0.273 Sum_probs=113.7 Q ss_pred HHHHHHHHHCCCCEEEEEEEEEEC-CCCCCCC----CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEC Q ss_conf 999998886289856999864530-7868342----32124335477756410006857999999999964983899730 Q gi|254780485|r 38 WSHTVHRKNFEPNHIQLSKLLNIK-TGGCPEN----CGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGA 112 (328) Q Consensus 38 ~Aa~~~r~~~~g~~V~~~~~in~~-TN~C~~~----C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~ 112 (328) T Consensus 168 ~GA~vv~qH-P~yp~~v--i~EiETyRGC~r~~~ggCSFCtEp~~---g~~--~~R~~e~Vv~EVkaLY~~GvrhFRlGR 239 (560) T COG1031 168 LGAEVVKQH-PNYPEYV--ICEIETYRGCPRRVSGGCSFCTEPVR---GRP--EFRPPEDVVEEVKALYRAGVRHFRLGR 239 (560) T ss_pred CCCHHHHHC-CCCCCEE--EEEEEECCCCCCCCCCCCCCCCCCCC---CCC--CCCCHHHHHHHHHHHHHHCCCEEEECC T ss_conf 433587738-8995307--99985136873203688754167576---884--658989999999999970603056156 Q ss_pred CC-----------C-CCCCCCHHHHHHHHHHHCCCCCCE---E---EECCCC------CHHHHHHHHCC--CCCEEEEEC Q ss_conf 36-----------8-887442899999887621368832---4---102569------99999987415--760697513 Q gi|254780485|r 113 AW-----------R-EPKERDLSIIVDMIKGVKSLGLET---C---MTLGML------SFEQAQILSKA--GLDYYNHNI 166 (328) Q Consensus 113 ~~-----------~-~~~~~~~~~~~e~i~~i~~~~~~i---~---~~~g~~------~~~~~~~Lk~a--G~~~~~~~l 166 (328) T Consensus 240 Q~difsy~~~~~g~e~P~P-nPealekL~~Gir~~AP~l~tLHiDNaNP~tIa~yp~eSr~i~K~ivky~TpGnVaAfGl 318 (560) T COG1031 240 QADIFSYGADDNGGEVPRP-NPEALEKLFRGIRNVAPNLKTLHIDNANPATIARYPEESREIAKVIVKYGTPGNVAAFGL 318 (560) T ss_pred CCCEEEECCCCCCCCCCCC-CHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEC T ss_conf 5410112156568879999-989999999999861898726654589956441584889999999986479875543304 Q ss_pred CCC-HHHHHCCCCCCCHHHHHHHHHHHHHCCC-------C---CCCEEEECC-CCCHHHHHHHHHHHHHCCCCCCEE--- Q ss_conf 437-7773205888898999999999998798-------5---577078668-989999999999997408888602--- Q gi|254780485|r 167 DTS-ERFYPHVTTTHTFEDRLQTLENVRKSGI-------K---VCCGGILGL-GEMIDDRIDMLLTLANLSTPPESI--- 231 (328) Q Consensus 167 et~-~~~~~~~~~~~~~~~~l~~~~~a~~~G~-------~---~~sg~l~G~-gEt~eeri~~l~~lr~l~~~~~~v--- 231 (328) T Consensus 319 EsaDp~V~r~NnL~~spEEvl~AV~ivn~vG~~rg~nGlP~lLPGINfv~GL~GEtkeT~~ln~efL~~ild~gllvRRI 398 (560) T COG1031 319 ESADPRVARKNNLNASPEEVLEAVEIVNEVGGGRGYNGLPYLLPGINFVFGLPGETKETYELNYEFLKEILDEGLLVRRI 398 (560) T ss_pred CCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEE T ss_conf 54687787640566998999999999998647667689842046620673388762777886499999997467468985 Q ss_pred ECCCEEECCCCCCCCC Q ss_conf 0541120487412445 Q gi|254780485|r 232 PINLLIPIPGSKFEEN 247 (328) Q Consensus 232 ~~~~~~p~~gt~l~~~ 247 (328) T Consensus 399 NIRqV~~fpgT~~~~~ 414 (560) T COG1031 399 NIRQVVVFPGTPMWER 414 (560) T ss_pred EEEEEEECCCCCHHHH T ss_conf 2036763279724665 |
|
| >COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00013 Score=50.54 Aligned_cols=193 Identities=13% Similarity=0.160 Sum_probs=109.1 Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-CEEEEEECCCCCCCCC--CHHHHHHHHHHHC Q ss_conf 645307868342321243354777564100068579999999999649-8389973036888744--2899999887621 Q gi|254780485|r 57 LLNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENG-ATRYCMGAAWREPKER--DLSIIVDMIKGVK 133 (328) Q Consensus 57 ~in~~TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G-~~~~~l~~~~~~~~~~--~~~~~~e~i~~i~ 133 (328) T Consensus 114 Lll~-t~~C~vyCRyC-fRr~~~~~~~~~--~~~~~~~~al~YIa~hPeI~eV-llSGGDPL~ls~~~L~~ll~~L~~Ip 188 (369) T COG1509 114 LLLV-TGVCAVYCRYC-FRRRFVGQDNQG--FNKEEWDKALDYIAAHPEIREV-LLSGGDPLSLSDKKLEWLLKRLRAIP 188 (369) T ss_pred EEEE-CCCCCCEEEEC-CCCCCCCCCCCC--CCHHHHHHHHHHHHCCCHHHEE-EECCCCCCCCCHHHHHHHHHHHHCCC T ss_conf 9996-48664521000-134555666566--7889999999999739516517-74078756368899999999875489 Q ss_pred CC-CCCEE-----EECCCCCHHHHHHHHCCCCCEEEE-ECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCC-CCEE-E Q ss_conf 36-88324-----102569999999874157606975-13437777320588889899999999999879855-7707-8 Q gi|254780485|r 134 SL-GLETC-----MTLGMLSFEQAQILSKAGLDYYNH-NIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKV-CCGG-I 204 (328) Q Consensus 134 ~~-~~~i~-----~~~g~~~~~~~~~Lk~aG~~~~~~-~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~-~sg~-l 204 (328) T Consensus 189 Hv~iiRi~TR~pvv~P~RIt~~L~~~l~~~~~~v~~~tH~NHp~Ei---------t~e~~~A~~~L~~aGv~l~NQsVLL 259 (369) T COG1509 189 HVKIIRIGTRLPVVLPQRITDELCEILGKSRKPVWLVTHFNHPNEI---------TPEAREACAKLRDAGVPLLNQSVLL 259 (369) T ss_pred CEEEEEEECCCCEECHHHHCHHHHHHHHCCCCEEEEECCCCCHHHC---------CHHHHHHHHHHHHCCCEEECCHHEE T ss_conf 6469986246743154440699999872358607998035883546---------8999999999997595653241011 Q ss_pred ECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCC Q ss_conf 6689899999999999974088886020541120487412445687989999999999996868 Q gi|254780485|r 205 LGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPK 268 (328) Q Consensus 205 ~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~ 268 (328) T Consensus 260 rGVND~~evl~~L~~~L~~~gV~PYYl~--~~D~~~G~---~hfr~~i~~~~~i~~~lr~~~SG 318 (369) T COG1509 260 RGVNDDPEVLKELSRALFDAGVKPYYLH--QLDLVQGA---AHFRVPIAEGLQIVEELRGRTSG 318 (369) T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCEEEE--CCCCCCCC---CCEECCHHHHHHHHHHHHHHCCC T ss_conf 4667999999999999997488621785--16766772---33514099999999999975777 |
|
| >PRK01254 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.5e-05 Score=55.43 Aligned_cols=203 Identities=15% Similarity=0.206 Sum_probs=111.6 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH--CCCEEEEEECCCCC----------------------- Q ss_conf 78683423212433547775641000685799999999996--49838997303688----------------------- Q gi|254780485|r 62 TGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKE--NGATRYCMGAAWRE----------------------- 116 (328) Q Consensus 62 TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~--~G~~~~~l~~~~~~----------------------- 116 (328) T Consensus 379 ~RGCfGgCsFCaIt~HQG---R~IqSRS~eSIl~E~~~i~~k~p~FkG~IsDvGGPTANMy~~~C~~~~~~~~C~r~sCl 455 (742) T PRK01254 379 MRGCFGGCSFCSITEHEG---RIIQSRSEESIINEIEAIRDKVPGFTGVISDLGGPTANMYRLGCKSPKAEQTCRRLSCV 455 (742) T ss_pred CCCCCCCCCEEEEEECCC---CEEEECCHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHCCCCCCCCHHCCCCCCCCCC T ss_conf 485445784132230168---63343278999999999996489986776358871365431547981100789997789 Q ss_pred ------CCCCCHHHHHHHHHHHCCC-CC-CEEEECC------CCCHHHHHHHHCCCCCEEE-EECC-CCHHHHHCCC-C- Q ss_conf ------8744289999988762136-88-3241025------6999999987415760697-5134-3777732058-8- Q gi|254780485|r 117 ------PKERDLSIIVDMIKGVKSL-GL-ETCMTLG------MLSFEQAQILSKAGLDYYN-HNID-TSERFYPHVT-T- 178 (328) Q Consensus 117 ------~~~~~~~~~~e~i~~i~~~-~~-~i~~~~g------~~~~~~~~~Lk~aG~~~~~-~~le-t~~~~~~~~~-~- 178 (328) T Consensus 456 ~P~iC~nL~~dH~~~i~Llrk~R~lpGVKkVfI~SGiRyDLa~~d~eylkELv~hHVsGqLKVAPEH~~~~vL~~M~KP~ 535 (742) T PRK01254 456 YPDICPHLDTDHSPTIDLYRRARDLKGIKKILIASGVRYDLAVEDPEYVKELVTHHVGGYLKIAPEHTEEGPLSKMMKPG 535 (742) T ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHCCHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHCCCC T ss_conf 98778888788099999999986289865555312054555533889999999873687066576546858999862998 Q ss_pred CCCHHHHHHHH-HHHHHCCCC--CCCEEEECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCC----------- Q ss_conf 88989999999-999987985--577078668-989999999999997408888602054112048741----------- Q gi|254780485|r 179 THTFEDRLQTL-ENVRKSGIK--VCCGGILGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSK----------- 243 (328) Q Consensus 179 ~~~~~~~l~~~-~~a~~~G~~--~~sg~l~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~----------- 243 (328) T Consensus 536 ~~~y~rF~~~F~~~sk~~GK~QyLiPYfisaHPG~t~~Dm~~LA~~lk~~~~~peQV--QdF~PTP~t~sT~MYyTg~dP 613 (742) T PRK01254 536 MGSYDRFKELFDKYSKEAGKEQYLIPYFISAHPGTTDEDMVNLALWLKKNRFRLDQV--QNFYPSPMANATTMYYTGKNP 613 (742) T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHC--EEEECCCCHHHHHHHHCCCCC T ss_conf 689999999999999985897036877870689989999999999999739997563--120278617888788707786 Q ss_pred C-------CCCCCC-CHHHHHHHHHHHHHHCCCC Q ss_conf 2-------445687-9899999999999968687 Q gi|254780485|r 244 F-------EENKKV-DPIEHVRIISVARILMPKS 269 (328) Q Consensus 244 l-------~~~~~~-~~~e~lr~iAi~RL~lP~~ 269 (328) T Consensus 614 l~~v~~t~e~V~v~k~~~ek~lqrAll~y~~P~N 647 (742) T PRK01254 614 LKKVKYKSEDVPVPKGDRQRRLHKALLRYHDPAN 647 (742) T ss_pred CCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCCC T ss_conf 6455667886236788889999999986348233 |
|
| >KOG2876 consensus | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.3e-06 Score=62.28 Aligned_cols=190 Identities=22% Similarity=0.299 Sum_probs=124.1 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCC-CCCEE Q ss_conf 78683423212433547775641000685799999999996498389973036888744289999988762136-88324 Q gi|254780485|r 62 TGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSL-GLETC 140 (328) Q Consensus 62 TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~-~~~i~ 140 (328) T Consensus 18 te~cnlrc~ycMpseg~~l-~pk~~~lav~eilrl~~lF~~qgv~knrLt-ggeptIr~d~~~i~~g~~~l~gLks~~I- 94 (323) T KOG2876 18 TEKCNLRCQYCMPSEGVPL-KPKRKLLAVSEILRLAGLFAPQGVDKNRLT-GGEPLIRQDIVPIVAGLSSLPGLKSIGI- 94 (323) T ss_pred HHCCCCCCCCCCHHCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCCCCCCCHHHHCCCHHHHHCE- T ss_conf 5200731212012007757-641000002446776435667550155405-7887410464310144412300144150- Q ss_pred EECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCCCC---CCCEEEECCCCCHHHHHH Q ss_conf 1025699999998741576069751343-777732058888989999999999987985---577078668989999999 Q gi|254780485|r 141 MTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSGIK---VCCGGILGLGEMIDDRID 216 (328) Q Consensus 141 ~~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~---~~sg~l~G~gEt~eeri~ 216 (328) T Consensus 95 Ttng~vl~R~lp~lhkaglssiNiSldtl~~aKfa~~~rr~g~v~V~~~iq~a~~lgy~pvkvn~v~~k~~n~~e--i~D 172 (323) T KOG2876 95 TTNGLVLARLLPQLHKAGLSSINISLDTLVRAKFAKLTRRKGFVKVWASIQLAIELGYNPVKVNCVVMKGLNEDE--VFD 172 (323) T ss_pred ECCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC--CCC T ss_conf 126226776617877724340003566555777777763112999998876776507787412256763367870--232 Q ss_pred HHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCCHHHHHHHH Q ss_conf 9999974088886020541120487412445687989999999 Q gi|254780485|r 217 MLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEHVRII 259 (328) Q Consensus 217 ~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~i 259 (328) T Consensus 173 fv~~tr---~~p~DVrfIe~mpf~gn~~~t~slipy~e~l~li 212 (323) T KOG2876 173 FVLLTR---MRPLDVRFIEFMPFDGNKWNTKSLIPYKEMLDLI 212 (323) T ss_pred EEEECC---CCCCCEEEEEECCCCCCCCCHHCCCCHHHHHHHH T ss_conf 133068---9875468899425678721110134488998877 |
|
| >PRK00955 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=8.3e-05 Score=51.89 Aligned_cols=202 Identities=18% Similarity=0.260 Sum_probs=108.4 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEE-EECCCC------------------------ Q ss_conf 786834232124335477756410006857999999999964-983899-730368------------------------ Q gi|254780485|r 62 TGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKEN-GATRYC-MGAAWR------------------------ 115 (328) Q Consensus 62 TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~-G~~~~~-l~~~~~------------------------ 115 (328) T Consensus 298 hRGCfGgCsFCaIt~HQGr---~I~sRS~~SIl~E~~~~~~~p~FkG~IsDvGGPTANmy~~~C~~~~~~g~C~~~~Cl~ 374 (599) T PRK00955 298 HRGCFGGCSFCAITFHQGR---FIQSRSKESILREAKELTQMPDFKGYIHDVGGPTANFRKMACKKQEKCGACKNKQCLF 374 (599) T ss_pred CCCCCCCCCCCCCCCCCCC---CEEECCHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHCCCCCCCHHHCCCCCCCCCCC T ss_conf 4762567821022011787---0344488999999999973889877871389824654306479802028899967899 Q ss_pred ----CCCCCCHHHHHHHHHHHCCC-C-CCEEEECCC--------CCHHHHHHHHCCCCCEE-EEECC-CCHHHHHCCC-C Q ss_conf ----88744289999988762136-8-832410256--------99999998741576069-75134-3777732058-8 Q gi|254780485|r 116 ----EPKERDLSIIVDMIKGVKSL-G-LETCMTLGM--------LSFEQAQILSKAGLDYY-NHNID-TSERFYPHVT-T 178 (328) Q Consensus 116 ----~~~~~~~~~~~e~i~~i~~~-~-~~i~~~~g~--------~~~~~~~~Lk~aG~~~~-~~~le-t~~~~~~~~~-~ 178 (328) T Consensus 375 P~~C~nL~~dh~~~~~LLrk~r~lpgVKkvfi~SGiRyDl~l~d~~~~yl~eL~~~HvsGqLKVAPEH~~~~VL~~M~KP 454 (599) T PRK00955 375 PKPCKNLDVDHTEYLDLLRKVRKLPGVKKVFIRSGIRYDYLLHDKNDEFFKELCEHHVSGQLKVAPEHISDRVLKYMGKP 454 (599) T ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCHHHHHHHCCCCCHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHCCC T ss_conf 98888987883899999999854899767774122655555136886999999977078706757754683788974799 Q ss_pred -CCCHHHHHHHH-HHHHHCCCC--CCCEEEECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCC---------- Q ss_conf -88989999999-999987985--577078668-989999999999997408888602054112048741---------- Q gi|254780485|r 179 -THTFEDRLQTL-ENVRKSGIK--VCCGGILGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSK---------- 243 (328) Q Consensus 179 -~~~~~~~l~~~-~~a~~~G~~--~~sg~l~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~---------- 243 (328) T Consensus 455 ~~~~~~~F~~~F~~~~k~~Gk~QylvPY~issHPGct~~dm~~La~~lk~~~~~peQV--QdF~PTP~T~sT~MYyTG~d 532 (599) T PRK00955 455 SREVYDKFVKKFDRINKKLGKKQFLVPYLMSSHPGSTLEDAIELAEYLKDLGYQPEQV--QDFYPTPGTLSTTMYYTGLD 532 (599) T ss_pred CHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHC--EEEECCCCHHHHHHHHHCCC T ss_conf 8189999999999999985897304777881699989999999999999739997773--11007851898889882788 Q ss_pred -CCCCC---CCCHHHHHHHHHHHHHHCCC Q ss_conf -24456---87989999999999996868 Q gi|254780485|r 244 -FEENK---KVDPIEHVRIISVARILMPK 268 (328) Q Consensus 244 -l~~~~---~~~~~e~lr~iAi~RL~lP~ 268 (328) T Consensus 533 P~t~~~V~V~k~~~ek~~Qrall~y~~p~ 561 (599) T PRK00955 533 PLTMEPVYVPKTKEEKAMQRALLQYRNPK 561 (599) T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCC T ss_conf 88798502469988999999998404800 |
|
| >COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00041 Score=47.25 Aligned_cols=171 Identities=16% Similarity=0.284 Sum_probs=90.0 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-CC------CEEEEEECCCCCCCCCCHHHHHHHHHHHCC-C Q ss_conf 683423212433547775641000685799999999996-49------838997303688874428999998876213-6 Q gi|254780485|r 64 GCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKE-NG------ATRYCMGAAWREPKERDLSIIVDMIKGVKS-L 135 (328) Q Consensus 64 ~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~-~G------~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~-~ 135 (328) T Consensus 110 GC~~~C~FCaTg---~~G--~~RNLs~~EIv~Qv~~~~~~~~~~~~~~i~NVV~MGMGEPl-~-N~dnV~~a~~i~~~~~ 182 (349) T COG0820 110 GCPVGCTFCATG---QGG--LNRNLSAGEIVEQVLLAAKALGEDFGRRISNVVFMGMGEPL-L-NLDNVVKALEIINDDE 182 (349) T ss_pred CCCCCCCEECCC---CCC--CEECCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHH-H-HHHHHHHHHHHHCCCC T ss_conf 867888726456---666--01121799999999999986176656436469996478606-6-6999999998626766 Q ss_pred CCC-----EEEECCCCCHHHHHHHHC-CCCCEEEEECCC-CHHHHHCCCC---CCCHHHHHHHHHHHHH-CCCCCCC--E Q ss_conf 883-----241025699999998741-576069751343-7777320588---8898999999999998-7985577--0 Q gi|254780485|r 136 GLE-----TCMTLGMLSFEQAQILSK-AGLDYYNHNIDT-SERFYPHVTT---THTFEDRLQTLENVRK-SGIKVCC--G 202 (328) Q Consensus 136 ~~~-----i~~~~g~~~~~~~~~Lk~-aG~~~~~~~let-~~~~~~~~~~---~~~~~~~l~~~~~a~~-~G~~~~s--g 202 (328) T Consensus 183 G~~ls~R~iTvSTsGi~-~~I~~l~~~~~~v~LAiSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~~rVt~EY~ 261 (349) T COG0820 183 GLGLSKRRITVSTSGIV-PRIRKLADEQLGVALAISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSGRRVTFEYV 261 (349) T ss_pred CCCCCCCEEEEECCCCC-HHHHHHHHHCCCEEEEEECCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEE T ss_conf 66646517999658875-76899875167758999506899899975332366798899999998622215966899866 Q ss_pred EEECCCCCHHHHHHHHHHHHHC-CCCCCEEECCCEEECCCCCCCC Q ss_conf 7866898999999999999740-8888602054112048741244 Q gi|254780485|r 203 GILGLGEMIDDRIDMLLTLANL-STPPESIPINLLIPIPGSKFEE 246 (328) Q Consensus 203 ~l~G~gEt~eeri~~l~~lr~l-~~~~~~v~~~~~~p~~gt~l~~ 246 (328) T Consensus 262 Ll~~VND~~----e~A~~L~~ll~~~~~~VNLIP~Np~~~~~y~r 302 (349) T COG0820 262 LLDGVNDSL----EHAKELAKLLKGIPCKVNLIPYNPVPGSDYER 302 (349) T ss_pred ECCCCCCCH----HHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC T ss_conf 204654888----89999999856897449986068989977447 |
|
| >COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0011 Score=44.44 Aligned_cols=195 Identities=14% Similarity=0.169 Sum_probs=110.5 Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCC Q ss_conf 98645307868342321243354777564100068579999999999649838997303688874428999998876213 Q gi|254780485|r 55 SKLLNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKS 134 (328) Q Consensus 55 ~~~in~~TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~ 134 (328) T Consensus 120 SgTVFF-s-gCnfrCVfCQNwdISq~~--~g~~v~~e~La~i~~~~~~~GakNvN~Vgg~Ptp---~lp~Ile~l~~~~~ 192 (335) T COG1313 120 SGTVFF-S-GCNFRCVFCQNWDISQFG--IGKEVTPEDLAEIILELRRHGAKNVNFVGGDPTP---HLPFILEALRYASE 192 (335) T ss_pred CCEEEE-C-CCCEEEEEECCCCCCCCC--CCEEECHHHHHHHHHHHHHHCCCCEEECCCCCCC---CHHHHHHHHHHHHC T ss_conf 740796-4-760589975576523367--8807569999999999998257621005899987---53899999999742 Q ss_pred CCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHH-----HCC-CCCCCEEEECC Q ss_conf 6883241025699999998741576069751343-7777320588889899999999999-----879-85577078668 Q gi|254780485|r 135 LGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVR-----KSG-IKVCCGGILGL 207 (328) Q Consensus 135 ~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~-----~~G-~~~~sg~l~G~ 207 (328) T Consensus 193 ~iPvvwNSnmY~s~E~l~lL~gv-VDiyL~DfKYgNdeca~kySkvp~Y---~eVv~rn~~~~~~~~g~~iiRHLVlPgh 268 (335) T COG1313 193 NIPVVWNSNMYMSEETLKLLDGV-VDIYLPDFKYGNDECAEKYSKVPNY---WEVVTRNILEAKEQVGGLIIRHLVLPGH 268 (335) T ss_pred CCCEEEECCCCCCHHHHHHHHCC-CEEEECCCCCCCHHHHHHHHCCCCH---HHHHHHHHHHHHHHCCCEEEEEEECCCC T ss_conf 79879706874489999986260-2043043246888999986058946---8998899999997427658888734884 Q ss_pred CCC-HHHHHHHHHHHHHCCCCCCEEECCCEEECCCCC----C-CCCCCCCHHHHHHHHHHHHHH Q ss_conf 989-999999999997408888602054112048741----2-445687989999999999996 Q gi|254780485|r 208 GEM-IDDRIDMLLTLANLSTPPESIPINLLIPIPGSK----F-EENKKVDPIEHVRIISVARIL 265 (328) Q Consensus 208 gEt-~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~----l-~~~~~~~~~e~lr~iAi~RL~ 265 (328) T Consensus 269 lecCTkpI---~~wiae~~g--~~~~vNiM~QY~P~ykA~eypeI~R~lt~eE~e~a~~~a~~~ 327 (335) T COG1313 269 LECCTKPI---LRWIAENLG--NDVRVNIMFQYRPEYKAEEYPEINRRLTREEYEKALEYAEKL 327 (335) T ss_pred HHHCCHHH---HHHHHHHCC--CCEEEEEHHHCCCHHHHHHCHHHCCCCCHHHHHHHHHHHHHC T ss_conf 22325899---999997589--870587532216235544244433658999999999999974 |
|
| >COG1244 Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0029 Score=41.55 Aligned_cols=181 Identities=14% Similarity=0.158 Sum_probs=111.1 Q ss_pred CCCCCC----CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC---CEE--EEEECCCCCCCC--CCHHHHHHHH Q ss_conf 078683----42321243354777564100068579999999999649---838--997303688874--4289999988 Q gi|254780485|r 61 KTGGCP----ENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENG---ATR--YCMGAAWREPKE--RDLSIIVDMI 129 (328) Q Consensus 61 ~TN~C~----~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G---~~~--~~l~~~~~~~~~--~~~~~~~e~i 129 (328) T Consensus 53 rT~GC~w~~~~gC~MCgY~~d~~-----~~~vs~E~l~~qfd~~~~k~~~~~~~~~vkIFTSGSFLD~~EVP~e~R~~Il 127 (358) T COG1244 53 RTRGCRWYREGGCYMCGYPADSA-----GEPVSEENLINQFDEAYSKYEGKFDEFVVKIFTSGSFLDPEEVPREARRYIL 127 (358) T ss_pred ECCCCCEECCCCCCEECCCCCCC-----CCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHCCHHHHHHHH T ss_conf 26883222058722426554668-----8989889999999999997224478754999715665892448879999999 Q ss_pred HHHCCCC--CCEEE--ECCCCCHHHHHHHHCC--CC-CEEEEECCCCHH-HHHC-CCCCCCHHHHHHHHHHHHHCCCCCC Q ss_conf 7621368--83241--0256999999987415--76-069751343777-7320-5888898999999999998798557 Q gi|254780485|r 130 KGVKSLG--LETCM--TLGMLSFEQAQILSKA--GL-DYYNHNIDTSER-FYPH-VTTTHTFEDRLQTLENVRKSGIKVC 200 (328) Q Consensus 130 ~~i~~~~--~~i~~--~~g~~~~~~~~~Lk~a--G~-~~~~~~let~~~-~~~~-~~~~~~~~~~l~~~~~a~~~G~~~~ 200 (328) T Consensus 128 ~~is~~~~v~~vvvESRpE~I~eE~l~e~~~il~gk~~EvaIGLETanD~ire~sINKGftF~df~~A~~~ir~~g~~vk 207 (358) T COG1244 128 ERISENDNVKEVVVESRPEFIREERLEEITEILEGKIVEVAIGLETANDKIREDSINKGFTFEDFVRAAEIIRNYGAKVK 207 (358) T ss_pred HHHHHCCCEEEEEEECCCHHCCHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEE T ss_conf 99752366027876047101278999999986089538999712447488998765138868999999999997497515 Q ss_pred CEEEECCC--CCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCC Q ss_conf 70786689--89999999999997408888602054112048741244 Q gi|254780485|r 201 CGGILGLG--EMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEE 246 (328) Q Consensus 201 sg~l~G~g--Et~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~ 246 (328) T Consensus 208 tYlllKP~FlSE~eAI~D~i~Si~~~~~~~d~iSinptnVqKgTlvE~ 255 (358) T COG1244 208 TYLLLKPPFLSEKEAIEDVISSIVAAKPGTDTISINPTNVQKGTLVEK 255 (358) T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHH T ss_conf 788831653476889999999999743678758844542213109999 |
|
| >PRK10076 pyruvate formate lyase II activase; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0038 Score=40.79 Aligned_cols=185 Identities=13% Similarity=0.104 Sum_probs=122.6 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-----CCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCC Q ss_conf 683423212433547775641000685799999999996-----498389973036888744289999988762136883 Q gi|254780485|r 64 GCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKE-----NGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLE 138 (328) Q Consensus 64 ~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~-----~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~ 138 (328) T Consensus 2 rca~~Cp~~A~~~-------~G~~~tveel~~~i~kd~~fy~~SgGGVT--~-SGGE-pl-~Q~~F~~ellk~~k~~gih 69 (213) T PRK10076 2 RDADECPSGAFER-------IGRDISLDALEREVMKDDIFFRTSGGGVT--L-SGGE-VL-MQAEFATRFLQRLRLWGVS 69 (213) T ss_pred CCHHHCHHHHHHH-------HCEEEEHHHHHHHHHHHHHHHHCCCCEEE--E-ECCH-HH-CCHHHHHHHHHHHHHCCCC T ss_conf 8556787788875-------26681099999999971999824798078--6-0752-63-5999999999999866998 Q ss_pred EEE-ECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCC--EEEECCCCCHHHH Q ss_conf 241-025699999998741576069751343-777732058888989999999999987985577--0786689899999 Q gi|254780485|r 139 TCM-TLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSGIKVCC--GGILGLGEMIDDR 214 (328) Q Consensus 139 i~~-~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~s--g~l~G~gEt~eer 214 (328) T Consensus 70 taieTsG~~~~~~~~~~~~~-~Dl~L~DiK~~d~~~h~~~-TG~~n~~il~Nl~~l~~~~~~v~iR~pvIPg~nd~~e~i 147 (213) T PRK10076 70 CAIETAGDAPASKLLPLAKL-CDEVLFDLKIMDATQARDV-VKMNLPRVLENLRLLVSEGVNVIPRLPLIPGFTLSRENM 147 (213) T ss_pred EEEECCCCCCHHHHHHHHHH-CCEEEEEECCCCHHHHHHH-HCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHH T ss_conf 89976888889999999984-5989986177984899999-799939999999999967996899886779978999999 Q ss_pred HHHHHHHHHCCCCCCEEECCCEEECC---------CCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 99999997408888602054112048---------741244568798999999999999 Q gi|254780485|r 215 IDMLLTLANLSTPPESIPINLLIPIP---------GSKFEENKKVDPIEHVRIISVARI 264 (328) Q Consensus 215 i~~l~~lr~l~~~~~~v~~~~~~p~~---------gt~l~~~~~~~~~e~lr~iAi~RL 264 (328) T Consensus 148 ~~~~~f~~~l~v--~~veLLPYH~~G~~Ky~~Lg~~Y~l~~~~~p~~e~~~~~~~i~~~ 204 (213) T PRK10076 148 QQALDVLIPLNI--RQIHLLPFHQYGEPKYRLLGKTWSMKEVPAPSSADVATMREMAER 204 (213) T ss_pred HHHHHHHHHCCC--CEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH T ss_conf 999999998699--779971884130799999788787789998599999999999996 |
|
| >TIGR00048 TIGR00048 radical SAM enzyme, Cfr family; InterPro: IPR004383 This family of conserved hypothetical proteins groups bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0018 Score=42.92 Aligned_cols=195 Identities=11% Similarity=0.263 Sum_probs=100.9 Q ss_pred EEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-HC---------CCEEEEEECCCCCCCCC Q ss_conf 569998645307868342321243354777564100068579999999999-64---------98389973036888744 Q gi|254780485|r 51 HIQLSKLLNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAK-EN---------GATRYCMGAAWREPKER 120 (328) Q Consensus 51 ~V~~~~~in~~TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~-~~---------G~~~~~l~~~~~~~~~~ 120 (328) T Consensus 120 k~TvCVSsQv---GC~~~C~FC~---T~~gGf~RN--L~~~EIi~Qv~~~~k~~G~~~~~~erP~~nvV~MGmGE-PL~- 189 (378) T TIGR00048 120 KATVCVSSQV---GCALGCTFCA---TAKGGFNRN--LEASEIIGQVLRVQKILGAAEETGERPVSNVVFMGMGE-PLL- 189 (378) T ss_pred CCCEEEEECC---CCCCCCCCCC---CCCCCCCCC--CCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCC-CCC- T ss_conf 7626871023---5422551033---457875214--51033899999999983455777665404788746787-101- Q ss_pred CHHHHHHHHHHHCC-CC--C---CEEEE-CCCCCHHHHHHHHCCCCCE-EEEECCC-CHHHHHCCCC---CCCHHHHHHH Q ss_conf 28999998876213-68--8---32410-2569999999874157606-9751343-7777320588---8898999999 Q gi|254780485|r 121 DLSIIVDMIKGVKS-LG--L---ETCMT-LGMLSFEQAQILSKAGLDY-YNHNIDT-SERFYPHVTT---THTFEDRLQT 188 (328) Q Consensus 121 ~~~~~~e~i~~i~~-~~--~---~i~~~-~g~~~~~~~~~Lk~aG~~~-~~~~let-~~~~~~~~~~---~~~~~~~l~~ 188 (328) T Consensus 190 Nl~~vv~a~ei~n~~~g~~is~r~~T~STsGv~~k--i~~Lad~~l~V~lAiSLHApn~~~R~~l~P~nk~Y~ie~ll~~ 267 (378) T TIGR00048 190 NLNEVVKALEILNDDVGLGISKRRITISTSGVVPK--IDELADKMLQVALAISLHAPNDELRSSLMPINKKYNIETLLAA 267 (378) T ss_pred CHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHH--HHHHCCCCCCEEEEEEECCCCCHHHHHHCCCCCCCCHHHHHHH T ss_conf 17999999998742220365673378873571458--8885132110334455328871124440650014786799999 Q ss_pred HH-HHHHCCC---CCCC--EEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCCHHHHHHHHH Q ss_conf 99-9998798---5577--07866898999999999999740888860205411204874124456879899999999 Q gi|254780485|r 189 LE-NVRKSGI---KVCC--GGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEHVRIIS 260 (328) Q Consensus 189 ~~-~a~~~G~---~~~s--g~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iA 260 (328) T Consensus 268 vr~Y~~~~~~n~GRV~fEY~Ll~~vND~~~HA~~La~lL~g~~c---kvNLIP~NP~~e~~Y~R~s~~~i~~F~~~L~ 342 (378) T TIGR00048 268 VRRYLEKTGRNQGRVTFEYVLLDGVNDQVEHAEELAELLKGVKC---KVNLIPFNPFPEADYERPSNEQIDRFAKVLK 342 (378) T ss_pred HHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCC---EEEEEECCCCCCCCCCCCCHHHHHHHHHHHH T ss_conf 98758642767772688742002468858899999998569985---0401213787988888880889999999862 |
. |
| >COG5014 Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.007 Score=38.96 Aligned_cols=165 Identities=15% Similarity=0.196 Sum_probs=95.1 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-HHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCE Q ss_conf 0786834232124335477756410006857999999999-964983899730368887442899999887621368832 Q gi|254780485|r 61 KTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNA-KENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLET 139 (328) Q Consensus 61 ~TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~-~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i 139 (328) T Consensus 47 D~VGCnl~CayCw~y~r~~~~~rag~f~~P~eVaeRL~ei~K~~g~d~vRiS-G~EP~-l-~~EHvlevIeLl~~~t-Fv 122 (228) T COG5014 47 DTVGCNLLCAYCWNYFRNLRPKRAGDFLSPEEVAERLLEISKKRGCDLVRIS-GAEPI-L-GREHVLEVIELLVNNT-FV 122 (228) T ss_pred CCCCCCEEEHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE-CCCCC-C-CHHHHHHHHHHCCCCE-EE T ss_conf 3135331238766666038722130215979999999999885588689962-89864-4-6899999998634764-99 Q ss_pred EEECCCC---CHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCC--CCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHH Q ss_conf 4102569---9999998741576069751343-7777320588--88989999999999987985577078668989999 Q gi|254780485|r 140 CMTLGML---SFEQAQILSKAGLDYYNHNIDT-SERFYPHVTT--THTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDD 213 (328) Q Consensus 140 ~~~~g~~---~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~--~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~ee 213 (328) T Consensus 123 lETNG~~~g~drslv~el~nr~nv~vRVsvKG~dpesF~kIT~asp~~F~~QL~aLr~L~~~g~rf~pA~~~~f--~~Ed 200 (228) T COG5014 123 LETNGLMFGFDRSLVDELVNRLNVLVRVSVKGWDPESFEKITGASPEYFRYQLKALRHLHGKGHRFWPAVVYDF--FRED 200 (228) T ss_pred EEECCEEEECCHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEHHHHCC--CHHH T ss_conf 97577688358889999713786399998357988998987568927899999999999846716510143203--5136 Q ss_pred HHH-HHHHHHHCCCCCCEE Q ss_conf 999-999997408888602 Q gi|254780485|r 214 RID-MLLTLANLSTPPESI 231 (328) Q Consensus 214 ri~-~l~~lr~l~~~~~~v 231 (328) T Consensus 201 ~~k~Lak~Lgehp~~P~~i 219 (228) T COG5014 201 GLKELAKRLGEHPPIPCRI 219 (228) T ss_pred HHHHHHHHHCCCCCCCCCE T ss_conf 6899998754389998524 |
|
| >PRK13762 tRNA-modifying enzyme; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.02 Score=35.89 Aligned_cols=183 Identities=13% Similarity=0.207 Sum_probs=99.9 Q ss_pred CCCCCCCCCCCCCCCCCCCC---CCCCCCHHHHHHHHHHHHHC---CC-----------------EEEEEECCCCCCCCC Q ss_conf 68342321243354777564---10006857999999999964---98-----------------389973036888744 Q gi|254780485|r 64 GCPENCGYCNQSVHNKSKLK---ASKLINVDQVLKEAKNAKEN---GA-----------------TRYCMGAAWREPKER 120 (328) Q Consensus 64 ~C~~~C~fCaf~~~~~~~~~---~~~~~~~Eei~~~a~~~~~~---G~-----------------~~~~l~~~~~~~~~~ 120 (328) T Consensus 67 ~C~~~CvfCW--R~~~~~~~~~~~~~~DdPe~Ive~~i~~h~~li~g~kG~p~v~~er~~EA~~p~H~AiSL~GEPtl-- 142 (321) T PRK13762 67 WCNQRCLFCW--RPLEEDVGLLKPPEWDDPEEIVEESIKEQRKLLSGYKGNPKVDKEKFEEALEPKHVAISLSGEPTL-- 142 (321) T ss_pred HHHCCCEEEC--CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCHHEEHHHCCCCCC-- T ss_conf 7744485656--899888766677888898999999999999997305899998989998727910010220488632-- Q ss_pred CHHHHHHHHHHHCCCCCCEE-EECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCC---CCHHHHHHHHHHHHHC Q ss_conf 28999998876213688324-1025699999998741576069751343-77773205888---8989999999999987 Q gi|254780485|r 121 DLSIIVDMIKGVKSLGLETC-MTLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTT---HTFEDRLQTLENVRKS 195 (328) Q Consensus 121 ~~~~~~e~i~~i~~~~~~i~-~~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~---~~~~~~l~~~~~a~~~ 195 (328) T Consensus 143 -YP~l~eLi~~~h~r~~stFLVTNg~~-P~~l~~l~~~-PTQLYvSldAp~~e~~k~i~rPl~~d~Wer~~~sL~~L~~~ 219 (321) T PRK13762 143 -YPRLPELIEEFHKRGFTTFLVTNGTR-PDVLEKLEAE-PTQLYVSLDAPDKETYNRINRPVIPDAWERILETLELLPSK 219 (321) T ss_pred -CHHHHHHHHHHHHCCCCEEEEECCCC-HHHHHHCCCC-CCEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCC T ss_conf -02189999999857983799828989-8999856676-54279980069999999861655331899999999975437 Q ss_pred CCCCC--CEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEE--CCCCCCCCCCCCCHHHHHH Q ss_conf 98557--70786689899999999999974088886020541120--4874124456879899999 Q gi|254780485|r 196 GIKVC--CGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIP--IPGSKFEENKKVDPIEHVR 257 (328) Q Consensus 196 G~~~~--sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p--~~gt~l~~~~~~~~~e~lr 257 (328) T Consensus 220 ~~RTV~R~TLVkg~Nm~~~~~yA---~Li~~~-~P~FIEvK~ym~~G~Sr~rLt~~nmP~heEV~~ 281 (321) T PRK13762 220 KTRTVIRITLVKGLNMTDPEGYA---KLIERA-NPDFVEVKAYMHVGYSRNRLTRDNMPSHEEVRE 281 (321) T ss_pred CCCEEEEEEEECCCCCCCHHHHH---HHHHHC-CCCEEEEEEEEEECCCCCCCCHHHCCCHHHHHH T ss_conf 98759999876565767989999---999854-998798711798426777677223998899999 |
|
| >COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.079 Score=31.91 Aligned_cols=204 Identities=15% Similarity=0.160 Sum_probs=115.9 Q ss_pred CCCCCCC---CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE----EEECCCCCCCCCCHHHHHHHHHHHCC Q ss_conf 7868342---3212433547775641000685799999999996498389----97303688874428999998876213 Q gi|254780485|r 62 TGGCPEN---CGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRY----CMGAAWREPKERDLSIIVDMIKGVKS 134 (328) Q Consensus 62 TN~C~~~---C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~----~l~~~~~~~~~~~~~~~~e~i~~i~~ 134 (328) T Consensus 34 ~~~c~~~~~~C~~cy~~v~~~---~~-~~~~~~~v~~e~~~--~lg~~~e~~~~~~~~~~~d~~c~--p~le~~~~r~~~ 105 (414) T COG1625 34 CKDCIPYRFGCDDCYLSVNEL---DT-GFIPPLMVEKEPDE--DLGLEFEEVLGAKQCGNGDTFCY--PDLEPRGRRARL 105 (414) T ss_pred CCCCCCCCCCCCCEEEEEECC---CC-CCCCHHHHHCCCCC--CCCCCCCCCCCEEECCCCCCCCC--CCHHHHHHHHHH T ss_conf 876877643502100588515---67-77887674235343--32433000112011279986657--311126667876 Q ss_pred CC----CCEEEEC--CCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECC Q ss_conf 68----8324102--5699999998741576069751343-777732058888989999999999987985577078668 Q gi|254780485|r 135 LG----LETCMTL--GMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGL 207 (328) Q Consensus 135 ~~----~~i~~~~--g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~ 207 (328) T Consensus 106 ~~~d~~~rL~~tsG~~~~lt~~~~~i~~~gvdev~~SVhtT~p~lR~klm~n~~A~~~le~L~~f~~~~~~v~a~iVl~P 185 (414) T COG1625 106 YYKDDDIRLSFTSGSGFTLTNRAERIIDAGVDEVYFSVHTTNPELRAKLMKNPNAEQLLELLRRFAERCIEVHAQIVLCP 185 (414) T ss_pred HCCCCCCEEEEEECCCEECCCHHHHHHHCCCCEEEEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEEEEEECC T ss_conf 15884403565312630154268999976998069999608989999986398677899999999975311356799857 Q ss_pred CCC-HHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCC--CCCCCHHHHHHHHHHHHHHCCCCC-CEEEE Q ss_conf 989-999999999997408888602054112048741244--568798999999999999686872-14231 Q gi|254780485|r 208 GEM-IDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEE--NKKVDPIEHVRIISVARILMPKSR-LRLAA 275 (328) Q Consensus 208 gEt-~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~--~~~~~~~e~lr~iAi~RL~lP~~~-i~i~~ 275 (328) T Consensus 186 GvNdge~L~kT~~dL~~~g~--~~~~~~~~~pvGlt~~n~~~i~~~t~~~l~~~k~i~re~~~E~~~~~V~g 255 (414) T COG1625 186 GVNDGEELEKTLEDLEEWGA--HEVILMRVVPVGLTRYNRPGIRPPTPHELEEFKEIVREFDRELGSIRVTG 255 (414) T ss_pred CCCCHHHHHHHHHHHHHHCC--CCEEEEEEECCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEC T ss_conf 85757779999999997286--73368986312115237777787787899999999999997538669837 |
|
| >TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family; InterPro: IPR012839 This subset of the radical-SAM domain includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centred radical | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.17 Score=29.73 Aligned_cols=197 Identities=16% Similarity=0.181 Sum_probs=120.5 Q ss_pred EEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH----HC-CCEEEEEECCCCCCCCCCHHHHH Q ss_conf 69998645307868342321243354777564100068579999999999----64-98389973036888744289999 Q gi|254780485|r 52 IQLSKLLNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAK----EN-GATRYCMGAAWREPKERDLSIIV 126 (328) Q Consensus 52 V~~~~~in~~TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~----~~-G~~~~~l~~~~~~~~~~~~~~~~ 126 (328) T Consensus 81 ~~~~~~~c~~Cg~C~~~Cp~~Al~~-------~G~~~tV~ev~~~~~~D~~fY~~SGGGvT--l-SGGE-P-l~Q~eF~~ 148 (305) T TIGR02494 81 ISIRREKCTGCGKCTEACPSGALEI-------VGKEMTVEEVMRVVLRDSIFYRNSGGGVT--L-SGGE-P-LLQPEFAL 148 (305) T ss_pred EEECCCCCCCCCCHHHCCCCHHHHE-------ECCCCCHHHHHHHHHHHHHHHHHCCCEEE--E-CCCC-C-CCCHHHHH T ss_conf 1000017741110110384006420-------24514889999999865566651399067--3-4871-1-40158999 Q ss_pred HHHHHHCCCCCCEEEE-CCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCC----CCCC Q ss_conf 9887621368832410-25699999998741576069751343-7777320588889899999999999879----8557 Q gi|254780485|r 127 DMIKGVKSLGLETCMT-LGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSG----IKVC 200 (328) Q Consensus 127 e~i~~i~~~~~~i~~~-~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G----~~~~ 200 (328) T Consensus 149 ~LL~~c~~~gihTAvET~gft~~~~~~~~~~~-~DLfL~DiK~~D~~~H~~~-tG~~N~~IL~NL~~L~~~~~~GG~~v~ 226 (305) T TIGR02494 149 ALLKACRERGIHTAVETSGFTPWETIEKVLPY-VDLFLYDIKHLDDERHKEV-TGVDNELILENLEALLAAGKDGGKNVV 226 (305) T ss_pred HHHHHHHHCCCCEEECCCCCCCHHHHHHHHHH-HHHHHHHHHHCCCHHHHHH-CCCCHHHHHHHHHHHHHHCCCCCCEEE T ss_conf 99999975899467605568888999988887-7699872641180120553-389837899999999971788995589 Q ss_pred CEE--EECCCCCHHHHHHHHHHHHHCCCC-CCEEECCCEEE---C-------CCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 707--866898999999999999740888-86020541120---4-------87412445687989999999999 Q gi|254780485|r 201 CGG--ILGLGEMIDDRIDMLLTLANLSTP-PESIPINLLIP---I-------PGSKFEENKKVDPIEHVRIISVA 262 (328) Q Consensus 201 sg~--l~G~gEt~eeri~~l~~lr~l~~~-~~~v~~~~~~p---~-------~gt~l~~~~~~~~~e~lr~iAi~ 262 (328) T Consensus 227 iR~PvIpG~Nds~~~i~a~~~f~~~~~~~N~~~i~LLPyH~lG~~KY~~LG~~~~~~~~~~~~~~e~~~~l~~~~ 301 (305) T TIGR02494 227 IRIPVIPGFNDSEENIEAIAEFLRKLLPGNVKEIDLLPYHRLGENKYRQLGREYYPDSEIPDPAEEQLLELKEIF 301 (305) T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH T ss_conf 987204898989899999999999851789765674486055679998558867778888886667899999999 |
The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4 from EC, IPR012838 from INTERPRO) and the anaerobic ribonucleotide reductase activating enzyme (IPR012837 from INTERPRO). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in Escherichia coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterisation and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain, which follows a conserved group of three cysteines and contains a variable pattern of 0 to 8 additional cysteines.. |
| >pfam06968 BATS Biotin and Thiamin Synthesis associated domain | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-19 Score=151.47 Aligned_cols=93 Identities=41% Similarity=0.695 Sum_probs=87.7 Q ss_pred ECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCCCCHH Q ss_conf 05411204874124456879899999999999968687214231156516568999998099889977866515888989 Q gi|254780485|r 232 PINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYN 311 (328) Q Consensus 232 ~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~~~ 311 (328) T Consensus 1 piN~L~P~~Gtpl~~~~~l~~~e~l~~ia~~Rl~~P~~~irla~gre~~l~d~~~~~~~sgans~~~G~yltt~g~r~~~ 80 (93) T pfam06968 1 PINFLRPIEGTPLEDQPPLSDEEALKTIAAFRLLLPDAGIRLSGGREALLRDLQGLAFMSGANSTFVGGYLTTSGNRSPD 80 (93) T ss_pred CCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCEEEECCCEECCCCCCHH T ss_conf 95130258999888999999999999999999986995289727962122515999998305304787835428999889 Q ss_pred HHHHHHHHCCCCC Q ss_conf 9999999829853 Q gi|254780485|r 312 KDTILFNRLGLIP 324 (328) Q Consensus 312 ~~~~~i~~~G~~P 324 (328) T Consensus 81 ~d~~mi~~~G~~p 93 (93) T pfam06968 81 EDIAMLKDLGLEP 93 (93) T ss_pred HHHHHHHHCCCCC T ss_conf 9999999859999 |
Biotin synthase (BioB), EC:2.8.1.6, catalyses the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this family) and form a heterodimer. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers. This domain therefore may be involved in co-factor binding or dimerization (Finn, RD personal observation). |
| >smart00876 BATS Biotin and Thiamin Synthesis associated domain | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.7e-18 Score=142.31 Aligned_cols=93 Identities=45% Similarity=0.784 Sum_probs=85.4 Q ss_pred ECCCEEECCCCCCCCC-CCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCCCCH Q ss_conf 0541120487412445-687989999999999996868721423115651656899999809988997786651588898 Q gi|254780485|r 232 PINLLIPIPGSKFEEN-KKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSY 310 (328) Q Consensus 232 ~~~~~~p~~gt~l~~~-~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~~ 310 (328) T Consensus 1 pin~l~P~~Gtple~~~~~~~~~e~lk~ia~~Rl~~P~~~I~la~gr~~~~~~~~~~~l~aGan~~~~G~~~ltt~g~~~ 80 (94) T smart00876 1 PINRLRPIEGTPLEDPPPPVSPEEFLRTIAAARLALPDAGIRLSTGREALLRDLQALCFSAGANSIFGGDKYLTTSGPRS 80 (94) T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHCCCCHHCCCCCCCCCCCCH T ss_conf 96601368999778788999999999999999998699637973781200575899999834721404763307899587 Q ss_pred HHHHHHHHHCCCCC Q ss_conf 99999999829853 Q gi|254780485|r 311 NKDTILFNRLGLIP 324 (328) Q Consensus 311 ~~~~~~i~~~G~~P 324 (328) T Consensus 81 ~~d~~~i~~~G~~~ 94 (94) T smart00876 81 ADDVAMLEKLGLEP 94 (94) T ss_pred HHHHHHHHHCCCCC T ss_conf 89999999859999 |
Biotin synthase (BioB), , catalyses the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer PUBMED:12482614. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this entry) and form a heterodimerPUBMED:12650933. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers PUBMED:12482614, PUBMED:12650933. This domain therefore may be involved in co-factor binding or dimerisation. |
| >COG1856 Uncharacterized homolog of biotin synthetase [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.4e-16 Score=129.25 Aligned_cols=230 Identities=20% Similarity=0.320 Sum_probs=175.2 Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCC- Q ss_conf 6453078683423212433547775641000685799999999996498389973036888744289999988762136- Q gi|254780485|r 57 LLNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSL- 135 (328) Q Consensus 57 ~in~~TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~- 135 (328) T Consensus 13 sISVTG~yC~lnC~HCg--~~~L~~Mi---~vt~~~l~k~~~el~kkGy~g~llSGGm~srg~VPl~kf~d~lK~lke~~ 87 (275) T COG1856 13 SISVTGAYCSLNCPHCG--RHYLEHMI---KVTTKSLLKRCMELEKKGYEGCLLSGGMDSRGKVPLWKFKDELKALKERT 87 (275) T ss_pred EEEEECCCEEECCHHHH--HHHHHHHC---CCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 37886363575381777--99998752---53257788899999845760589757868799742899999999987753 Q ss_pred CCCEEEECCCCCHHHHHHHHCCCCCEEEEECCC----CHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCC-CC Q ss_conf 883241025699999998741576069751343----7777320588889899999999999879855770786689-89 Q gi|254780485|r 136 GLETCMTLGMLSFEQAQILSKAGLDYYNHNIDT----SERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLG-EM 210 (328) Q Consensus 136 ~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let----~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~g-Et 210 (328) T Consensus 88 ~l~inaHvGfvdE~~~eklk~~~vdvvsLDfvgDn~vIk~vy~l---~ksv~dyl~~l~~L~e~~irvvpHitiGL~~gk 164 (275) T COG1856 88 GLLINAHVGFVDESDLEKLKEELVDVVSLDFVGDNDVIKRVYKL---PKSVEDYLRSLLLLKENGIRVVPHITIGLDFGK 164 (275) T ss_pred CEEEEEEEEECCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHCC---CCCHHHHHHHHHHHHHCCCEECEEEEEEECCCC T ss_conf 74899985100178899998716868998612774899999768---863777788999999709425305999731685 Q ss_pred HHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHH--HHCHHHHHHH Q ss_conf 99999999999740888860205411204874124456879899999999999968687214231156--5165689999 Q gi|254780485|r 211 IDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRA--MMSDELQALC 288 (328) Q Consensus 211 ~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~--~~~~~~~~~~ 288 (328) T Consensus 165 i~~e~kaIdiL~~--~~~DalVl~vliPtpGtkm~~~~pp~~eE~i~v~~~AR~~f~~-pv~iGCmrP~Ge~rvk~d~~a 241 (275) T COG1856 165 IHGEFKAIDILVN--YEPDALVLVVLIPTPGTKMGNSPPPPVEEAIKVVKYARKKFPN-PVSIGCMRPRGEWRVKLDKEA 241 (275) T ss_pred CCCHHHHHHHHHC--CCCCEEEEEEEECCCCHHCCCCCCCCHHHHHHHHHHHHHHCCC-CEEEEECCCCCHHHHHHHHHH T ss_conf 2333878899860--7997399999813885010577976989999999999985899-746741476753678788888 Q ss_pred HHHCCCEEE Q ss_conf 980998899 Q gi|254780485|r 289 FFSGANSIF 297 (328) Q Consensus 289 L~~GaN~~~ 297 (328) T Consensus 242 v~~gVd~It 250 (275) T COG1856 242 VLAGVDRIT 250 (275) T ss_pred HHCCCCEEE T ss_conf 871885044 |
|
| >KOG2492 consensus | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00024 Score=48.76 Aligned_cols=224 Identities=14% Similarity=0.133 Sum_probs=126.0 Q ss_pred CCCCCCCCCCCC--CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCH----------------- Q ss_conf 786834232124--3354777564100068579999999999649838997303688874428----------------- Q gi|254780485|r 62 TGGCPENCGYCN--QSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDL----------------- 122 (328) Q Consensus 62 TN~C~~~C~fCa--f~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~----------------- 122 (328) T Consensus 227 MRGCdNMCtyCiVpftrGr----e--Rsrpi~siv~ev~~L~~qG~KeVTLLG-QNVNSyrD~s~~~~~~a~~~~~~~GF 299 (552) T KOG2492 227 MRGCDNMCTYCIVPFTRGR----E--RSRPIESIVEEVKRLAEQGVKEVTLLG-QNVNSYRDNSAVQFSSAVPTNLSPGF 299 (552) T ss_pred HHCCCCCCCEEEEECCCCC----C--CCCCHHHHHHHHHHHHHCCCEEEEEEC-CCCCCCCCCHHHHHCCCCCCCCCCCC T ss_conf 7564554455877525775----4--577468999999877654740366301-45443344426563247866668884 Q ss_pred ----------HHHHHHHHHHCCCCCCE-----EEECCCCCHHHHHHHHCCCCC-EEEE-ECCC-CHHHHHCCCCCCCHHH Q ss_conf ----------99999887621368832-----410256999999987415760-6975-1343-7777320588889899 Q gi|254780485|r 123 ----------SIIVDMIKGVKSLGLET-----CMTLGMLSFEQAQILSKAGLD-YYNH-NIDT-SERFYPHVTTTHTFED 184 (328) Q Consensus 123 ----------~~~~e~i~~i~~~~~~i-----~~~~g~~~~~~~~~Lk~aG~~-~~~~-~let-~~~~~~~~~~~~~~~~ 184 (328) T Consensus 300 st~yK~K~gGl~Fa~LLd~vs~~~PemR~RFTSPHPKDfpdevl~li~~rdnickqihlPAqSgds~vLE~mrRgysrea 379 (552) T KOG2492 300 STVYKPKQGGLRFAHLLDQVSRADPEMRIRFTSPHPKDFPDEVLELIRDRDNICKQIHLPAQSGDSRVLEIMRRGYSREA 379 (552) T ss_pred EEEECCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCHHHEEECCCCCCCHHHHHHHHCCCCHHH T ss_conf 01211467884089999988652865078736999877739999998817531422425666885489999870578676 Q ss_pred HHHHHHHHHHC--CCCCCCEEEECC-CCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCC------CHHHH Q ss_conf 99999999987--985577078668-9899999999999974088886020541120487412445687------98999 Q gi|254780485|r 185 RLQTLENVRKS--GIKVCCGGILGL-GEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKV------DPIEH 255 (328) Q Consensus 185 ~l~~~~~a~~~--G~~~~sg~l~G~-gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~------~~~e~ 255 (328) T Consensus 380 yl~lv~~Irs~iPgVglssdfitgfCgeTeedhq~t~sLlrqVg--Ydv~~lFaysmR~kT~ay~r~~ddvpeeVKnrrl 457 (552) T KOG2492 380 YLELVAHIRSMIPGVGLSSDFITGFCGETEEDHQYTVSLLRQVG--YDVVFLFAYSMREKTRAYHRLKDDVPEEVKNRRL 457 (552) T ss_pred HHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC--CCEEEEEEEEECCCCHHHHHHCCCCCHHHHHHHH T ss_conf 53477778865888763232574056787277899999999855--3736667765314414556523665177887779 Q ss_pred HHHHHHHHHH---CCCCCCEEEEHHHHHCHHHHHHHHHHCCC Q ss_conf 9999999996---86872142311565165689999980998 Q gi|254780485|r 256 VRIISVARIL---MPKSRLRLAAGRAMMSDELQALCFFSGAN 294 (328) Q Consensus 256 lr~iAi~RL~---lP~~~i~i~~~~~~~~~~~~~~~L~~GaN 294 (328) T Consensus 458 ~~Li~~Fre~A~~~~d~lvgc~Qlvlveg~sKrs~t~~~gr~ 499 (552) T KOG2492 458 FELITFFREEAIKFNDGLVGCTQLVLVEGKSKRSATDLCGRN 499 (552) T ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHCCC T ss_conf 999999999888875358652100011024566688872666 |
|
| >PRK08207 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.8e-15 Score=119.06 Aligned_cols=242 Identities=19% Similarity=0.218 Sum_probs=163.9 Q ss_pred CCCCHHHHHHHHCC----CH--HHHHHHHHHHHHHHC-----CCCEEEEEEEEEECCCCCCCCCCCCCCCCCC----CCC Q ss_conf 47899999999739----91--899999999988862-----8985699986453078683423212433547----775 Q gi|254780485|r 17 KVWTSKEVFQIYNM----PF--NDLLFWSHTVHRKNF-----EPNHIQLSKLLNIKTGGCPENCGYCNQSVHN----KSK 81 (328) Q Consensus 17 e~ls~eea~~L~~~----~~--~el~~~Aa~~~r~~~-----~g~~V~~~~~in~~TN~C~~~C~fCaf~~~~----~~~ 81 (328) T Consensus 127 ~g~~~~~i~~~l~~~y~vs~eK~~L~~~ia~~e~~~l~~~~~~~~~~SLYIHIP----FC~~kC~YCdF~s~~i~~~~~~ 202 (497) T PRK08207 127 EGMSEEEIHEELKEEYLIREEKAELLQEVAKRELSFVPDLNKDKNEVSIYIGIP----FCPTRCLYCSFPSYPINGRKGL 202 (497) T ss_pred CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEC----CCCCCCCCCCCCCCCCCCCCCC T ss_conf 489999999999998668999999999999999987512323788479999818----9589878999803115776331 Q ss_pred CCCCCCCCHHHHHHHHHHHHHCC--CEEEEEECCCCCCCCCCHHHHHHHHHHHCCCC------CCEEEE---CCCCCHHH Q ss_conf 64100068579999999999649--83899730368887442899999887621368------832410---25699999 Q gi|254780485|r 82 LKASKLINVDQVLKEAKNAKENG--ATRYCMGAAWREPKERDLSIIVDMIKGVKSLG------LETCMT---LGMLSFEQ 150 (328) Q Consensus 82 ~~~~~~~~~Eei~~~a~~~~~~G--~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~------~~i~~~---~g~~~~~~ 150 (328) T Consensus 203 v~~Yl~aL~kEI~~~~~~l~~~~~~i~TIY~G--GGTPS~Ls~~ql~~ll~~i~~~F~~~~~~~EiTvEanRPdtit~ek 280 (497) T PRK08207 203 VEPYLEALHYEIEEIGKYLKEKGLKIETIYFG--GGTPTSITAEEFEKLLEEIYESFPDVKNVKEFTVEAGRPDTITEEK 280 (497) T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEECEEEEC--CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHH T ss_conf 99999999999999998762379803569979--9810029999999999999986576899977999787989629999 Q ss_pred HHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCCC-CCCCEEEECC-CCCHHHHHHHHHHHHHCCCC Q ss_conf 998741576069751343-77773205888898999999999998798-5577078668-98999999999999740888 Q gi|254780485|r 151 AQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSGI-KVCCGGILGL-GEMIDDRIDMLLTLANLSTP 227 (328) Q Consensus 151 ~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G~-~~~sg~l~G~-gEt~eeri~~l~~lr~l~~~ 227 (328) T Consensus 281 L~~lk~~GvnRiSiGvQSf~~~~Lk~lGR~Ht~~~~~~a~~~ar~~GF~nIN~DLI~GLPgqt~~~~~~tL~~i~~L~-- 358 (497) T PRK08207 281 LEVLKKYNVDRISINPQSMNDETLKAIGRHHTVEDIIEKFHLARELGFDNINMDLIIGLPGEGLEEFKHTLEEIEKLM-- 358 (497) T ss_pred HHHHHHCCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCC-- T ss_conf 999997598758883532998999981899999999999999998599849774353799999999999999998139-- Q ss_pred CCEEECCCEEECCCCCCCCCC----CCCHHHHHHHHHHHHHHC Q ss_conf 860205411204874124456----879899999999999968 Q gi|254780485|r 228 PESIPINLLIPIPGSKFEENK----KVDPIEHVRIISVARILM 266 (328) Q Consensus 228 ~~~v~~~~~~p~~gt~l~~~~----~~~~~e~lr~iAi~RL~l 266 (328) T Consensus 359 Pd~iTvhsLaikr~s~l~~~~~~~~l~~~~~~~~m~~~~~~~~ 401 (497) T PRK08207 359 PDSLTVHTLSIKRASRLTENKEKYKVADREEINAMMEEAEEWA 401 (497) T ss_pred CCEEEEEEEEECCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 9825876665546860222455668998589999999999999 |
|
| >TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A; InterPro: IPR013485 This entry consists of archaeal proteins which are predicted to be functionally equivalent to MoaA (molybdenum cofactor biosynthesis protein A) from bacteria (see IPR013483 from INTERPRO) | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.6e-14 Score=117.05 Aligned_cols=169 Identities=21% Similarity=0.347 Sum_probs=127.3 Q ss_pred CCCEEE-EEEEEEECCCCCCCCCCCCCCCCCCCC---CCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHH Q ss_conf 898569-998645307868342321243354777---5641000685799999999996498389973036888744289 Q gi|254780485|r 48 EPNHIQ-LSKLLNIKTGGCPENCGYCNQSVHNKS---KLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLS 123 (328) Q Consensus 48 ~g~~V~-~~~~in~~TN~C~~~C~fCaf~~~~~~---~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~ 123 (328) T Consensus 5 fGR~v~~LRi--s~-T~~CN~~CfyCH~EG~~~~~~r~gp~~~~Ls~eei~~~~~~a~~fGV~kvKl-TGGEPlLR~D-- 78 (324) T TIGR02668 5 FGRPVTSLRI--SV-TDECNLSCFYCHREGEDESRGRQGPGGNELSPEEIERIVRVASEFGVRKVKL-TGGEPLLRKD-- 78 (324) T ss_pred CCCEECCCEE--EE-CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE-CCCCCCHHHH-- T ss_conf 6872046315--77-3423864221036788888888888644558999999999998708832775-1787434566-- Q ss_pred HHHHHHHHHCCCCC-CEEE-ECCCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCC--CCCCHHHHHHHHHHHHHCCC- Q ss_conf 99998876213688-3241-025699999998741576069751343-777732058--88898999999999998798- Q gi|254780485|r 124 IIVDMIKGVKSLGL-ETCM-TLGMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVT--TTHTFEDRLQTLENVRKSGI- 197 (328) Q Consensus 124 ~~~e~i~~i~~~~~-~i~~-~~g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~--~~~~~~~~l~~~~~a~~~G~- 197 (328) T Consensus 79 -~~~Ii~~~~~~~~~~vSmTTNG~LL~~~A~~Lk~AGLdRVNVSLdtld~e~Y~kITG~~~~~~~~Vi~GI~~A~~~GL~ 157 (324) T TIGR02668 79 -LIEIIRRIKDYGIKDVSMTTNGILLEKLAKKLKEAGLDRVNVSLDTLDPEKYKKITGQSRDALDRVIEGIESAVDAGLT 157 (324) T ss_pred -HHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC T ss_conf -9999986146750344203031448989999998285613120267886788864489986078999999999972898 Q ss_pred CCCCEEEECCCCCHHH-HHHHHHHHHH Q ss_conf 5577078668989999-9999999974 Q gi|254780485|r 198 KVCCGGILGLGEMIDD-RIDMLLTLAN 223 (328) Q Consensus 198 ~~~sg~l~G~gEt~ee-ri~~l~~lr~ 223 (328) T Consensus 158 PVKlN~Vvl~G~N~~~~~~~m~~f~~~ 184 (324) T TIGR02668 158 PVKLNMVVLKGINDNEEIPDMVEFAAD 184 (324) T ss_pred CEEEEEEEECCCCCCCCHHHHHHHHHH T ss_conf 137888875477885007999999987 |
; GO: 0046872 metal ion binding, 0006777 Mo-molybdopterin cofactor biosynthetic process. |
| >pfam04055 Radical_SAM Radical SAM superfamily | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-13 Score=110.46 Aligned_cols=158 Identities=25% Similarity=0.362 Sum_probs=112.3 Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCH-HHHHHHHHHHC--CC Q ss_conf 5307868342321243354777564100068579999999999649838997303688874428-99999887621--36 Q gi|254780485|r 59 NIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDL-SIIVDMIKGVK--SL 135 (328) Q Consensus 59 n~~TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~-~~~~e~i~~i~--~~ 135 (328) T Consensus 2 ~~-~~gC~~~C~fC~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~-gg~p~~~~~~~~~~~~~~~~~~~~~~ 77 (165) T pfam04055 2 II-TPGCNLRCTYCAFPSIR--ARGKGRELSPEEILEEAKELARLGVEVVILT-GGEPLLLPDLVELLERLLKLEELEGI 77 (165) T ss_pred EE-CCCCCCCCCCCCCCCCC--CCCCCCCCCHHHHHHHHHHHHHCCCEEEEEE-CCCCCCCHHHHHHHHHHHHHCCCCCE T ss_conf 88-93748779689997857--8886522699999999988874598599993-16766652777778887653146764 Q ss_pred CCCEEEECCCCCHHHHHHHHCCCCCEEEEECCCC-HHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECC-CCCHHH Q ss_conf 8832410256999999987415760697513437-77732058888989999999999987985577078668-989999 Q gi|254780485|r 136 GLETCMTLGMLSFEQAQILSKAGLDYYNHNIDTS-ERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGL-GEMIDD 213 (328) Q Consensus 136 ~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let~-~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~-gEt~ee 213 (328) T Consensus 78 ~~~~~t~~~~~~~~~~~~l~~~g~~~i~~~ie~~~~~~~~~~~~~~~~~~~~~~i~~~~~~gi~~~~~~i~~~~~e~~~~ 157 (165) T pfam04055 78 RITLETNGTLLDEELLEELKEAGLDRVSISLQSGDDEVLKIINRGHTFEEVLEALELLREAGIPVVVDNIVGLPGENDED 157 (165) T ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHH T ss_conf 89999851433104568999719852224635599999998579999899999999999879978899999799999999 Q ss_pred HHHHHHH Q ss_conf 9999999 Q gi|254780485|r 214 RIDMLLT 220 (328) Q Consensus 214 ri~~l~~ 220 (328) T Consensus 158 ~~~~~~~ 164 (165) T pfam04055 158 LEETLEL 164 (165) T ss_pred HHHHHHH T ss_conf 9999603 |
Radical SAM proteins catalyse diverse reactions, including unusual methylations, isomerisation, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. |
| >TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.2e-10 Score=91.03 Aligned_cols=194 Identities=12% Similarity=0.175 Sum_probs=135.0 Q ss_pred CHHHHHHHHHHHHHHHCCCCEEE-EEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE Q ss_conf 91899999999988862898569-99864530786834232124335477756410006857999999999964983899 Q gi|254780485|r 31 PFNDLLFWSHTVHRKNFEPNHIQ-LSKLLNIKTGGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYC 109 (328) Q Consensus 31 ~~~el~~~Aa~~~r~~~~g~~V~-~~~~in~~TN~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~ 109 (328) T Consensus 4 ~~~~~~~~~~y~~~~~~~g~kr~Plvl~le~-t~rCNL~C~~C~~i~~~~~-~l~-~~Ls~ee~~~~~~---e~Gap~V~ 77 (318) T TIGR03470 4 PLRQNLRVGAYIIKQKLNGRKRFPLVLMLEP-LFRCNLACAGCGKIQYPAE-ILK-QRLSVEECLRAVD---ECGAPVVS 77 (318) T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE-CCCCCCCCCCCCCCCCCCH-HHH-CCCCHHHHHHHHH---HCCCCEEE T ss_conf 4899999999999877337646675887312-1322677889974136764-654-4389999999999---84997899 Q ss_pred EECCCCCCCCCCHHHHHHHHHHHCCCCCCEEE-ECCCCCHHHHHHHHCCCCCEEEEECCCCHHHHHCC-CCCCCHHHHHH Q ss_conf 73036888744289999988762136883241-02569999999874157606975134377773205-88889899999 Q gi|254780485|r 110 MGAAWREPKERDLSIIVDMIKGVKSLGLETCM-TLGMLSFEQAQILSKAGLDYYNHNIDTSERFYPHV-TTTHTFEDRLQ 187 (328) Q Consensus 110 l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~-~~g~~~~~~~~~Lk~aG~~~~~~~let~~~~~~~~-~~~~~~~~~l~ 187 (328) T Consensus 78 i-tGGEPLLr~dl~eI---v~~a~~~g~~v~l~TNG~Ll~k~i~~~~~~~~~~~~VsLDG~~e~HD~~r~~~G~Fd~av~ 153 (318) T TIGR03470 78 I-PGGEPLLHPEIDEI---VRGLVARKKFVYLCTNALLLEKKLDKFEPSPYLTFSVHLDGLREHHDASVCREGVFDRAVE 153 (318) T ss_pred E-CCCCCCCCCCHHHH---HHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCHHHHHHH T ss_conf 5-18874556479999---9999975997999775520099999985188836999801787886688717977999999 Q ss_pred HHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCE Q ss_conf 9999998798557707866898999999999999740888860205411 Q gi|254780485|r 188 TLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLL 236 (328) Q Consensus 188 ~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~ 236 (328) T Consensus 154 aIr~ak~~G~~V~iN~Tvf~~~n~~~i~~~~d~~~~lgV--dgi~isp~ 200 (318) T TIGR03470 154 AIREAKARGFRVTTNTTLFNDTDPEEVAEFFDYLTDLGV--DGMTISPG 200 (318) T ss_pred HHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCC--CEEEECCC T ss_conf 999999869946799897068999999999999987699--73897665 |
The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH |
| >PRK13758 anaerobic sulfatase-maturase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.5e-07 Score=68.79 Aligned_cols=164 Identities=11% Similarity=0.134 Sum_probs=97.8 Q ss_pred EEECCCCCCCCCCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC---CHHHHHHHHHHHC Q ss_conf 4530786834232124335-47775641000685799999999996498389973036888744---2899999887621 Q gi|254780485|r 58 LNIKTGGCPENCGYCNQSV-HNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKER---DLSIIVDMIKGVK 133 (328) Q Consensus 58 in~~TN~C~~~C~fCaf~~-~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~---~~~~~~e~i~~i~ 133 (328) T Consensus 9 ~~~-T~~CNL~C~YCy~~~~~~~~~~~~~~~~~~e~~~~~i~~~~~~~~~~~~i~f~GGEPLL~~~~~~~~~~~~~~~~~ 87 (370) T PRK13758 9 KPA-SSGCNLKCTYCFYHSLSDNRNVKSYGIMRDEVLESMVKRVLNEAEGHCSFAFQGGEPTLAGLEFFEELMELQRKHN 87 (370) T ss_pred ECC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHC T ss_conf 668-7884889976688376886666664548299999999999863689538999772220698369999999999855 Q ss_pred CCCCC----EEEECCCCCHHHHHHHHCCCCCEEEEECCCCHHHHHCCC----CCCCHHHHHHHHHHHHHCCCCCCCEEEE Q ss_conf 36883----241025699999998741576069751343777732058----8889899999999999879855770786 Q gi|254780485|r 134 SLGLE----TCMTLGMLSFEQAQILSKAGLDYYNHNIDTSERFYPHVT----TTHTFEDRLQTLENVRKSGIKVCCGGIL 205 (328) Q Consensus 134 ~~~~~----i~~~~g~~~~~~~~~Lk~aG~~~~~~~let~~~~~~~~~----~~~~~~~~l~~~~~a~~~G~~~~sg~l~ 205 (328) T Consensus 88 ~~~~~i~~~i~TNGtLL~~e~~~~l~~~~~-~I~ISlDG~~~~HD~~R~~~~G~Gsf~~v~~~i~~l~~~~~~~~i~~~i 166 (370) T PRK13758 88 YKNLKIYNSLQTNGTLIDESWAKFLSENKF-LVGLSMDGPKEIHNLNRKDCCGLDTFSKVERAAELFKKYKVEFNILCVV 166 (370) T ss_pred CCCCEEEEEEEECCEECCHHHHHHHHHCCE-EEEEECCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEE T ss_conf 689769999851887668999999997694-8999646888887400688899705999999999999739970089999 Q ss_pred C--CCCCHHHHHHHHHHHHHCCC Q ss_conf 6--89899999999999974088 Q gi|254780485|r 206 G--LGEMIDDRIDMLLTLANLST 226 (328) Q Consensus 206 G--~gEt~eeri~~l~~lr~l~~ 226 (328) T Consensus 167 ~~~~~~~~~~i~~~---~~~~g~ 186 (370) T PRK13758 167 TSNTARHVNKIYKY---FKEKDF 186 (370) T ss_pred ECCCCCCHHHHHHH---HHHCCC T ss_conf 18731189999999---997699 |
|
| >PRK13745 anaerobic sulfatase-maturase; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.4e-05 Score=54.44 Aligned_cols=162 Identities=14% Similarity=0.138 Sum_probs=99.7 Q ss_pred CCCCCCCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHH-CCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCC--CC Q ss_conf 7868342321243354777-5641000685799999999996-498389973036888744289999988762136--88 Q gi|254780485|r 62 TGGCPENCGYCNQSVHNKS-KLKASKLINVDQVLKEAKNAKE-NGATRYCMGAAWREPKERDLSIIVDMIKGVKSL--GL 137 (328) Q Consensus 62 TN~C~~~C~fCaf~~~~~~-~~~~~~~~~~Eei~~~a~~~~~-~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~--~~ 137 (328) T Consensus 21 s~~CNL~C~YCyy~~~~~~~~~~~~~~Ms~e~l~~~I~~~~~~~~~~~v~f~~~GGEPlL~gl~f~~~~v~l~~~~~~g~ 100 (412) T PRK13745 21 GAVCNLACDYCYYLEKSKLYQENPKHVMSDELLEKFIKEYINSQTMPQVLFTWHGGETLMRPLSFYKKAMELQKKYARGR 100 (412) T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCC T ss_conf 58758899867881614356567757898999999999999648998589998685445654789999999999853898 Q ss_pred C----EEEECCCCCHHHHHHHHCCCCCEEEEECCCCHHHHHCCCC----CCCHHHHHHHHHHHHHCCCCCCCEEEECC-- Q ss_conf 3----2410256999999987415760697513437777320588----88989999999999987985577078668-- Q gi|254780485|r 138 E----TCMTLGMLSFEQAQILSKAGLDYYNHNIDTSERFYPHVTT----THTFEDRLQTLENVRKSGIKVCCGGILGL-- 207 (328) Q Consensus 138 ~----i~~~~g~~~~~~~~~Lk~aG~~~~~~~let~~~~~~~~~~----~~~~~~~l~~~~~a~~~G~~~~sg~l~G~-- 207 (328) T Consensus 101 ~i~~siQTNGtLL~dew~~ff~~~~f-~VgiSiDGp~~~HD~~R~~~~G~gs~~~v~~~i~lL~~~~v~fn~L~vv~~~n 179 (412) T PRK13745 101 TIDNCIQTNGTLLTDEWCEFFRENNW-LVGVSIDGPQEFHDEYRKNKMGKPSFVKVMKGINLLKKHGVEWNAMAVVNDFN 179 (412) T ss_pred EEEEEEEECCEECCHHHHHHHHHCCC-EEEEECCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECHH T ss_conf 46899987787549999999998596-79996258878874027988998779999999999998499646999981115 Q ss_pred CCCHHHHHHHHHHHHHCCCC Q ss_conf 98999999999999740888 Q gi|254780485|r 208 GEMIDDRIDMLLTLANLSTP 227 (328) Q Consensus 208 gEt~eeri~~l~~lr~l~~~ 227 (328) T Consensus 180 ~~~p~~iY---~f~k~lg~~ 196 (412) T PRK13745 180 ADYPLDFY---NFFKELDCH 196 (412) T ss_pred HHCHHHHH---HHHHHCCCC T ss_conf 45889999---999975996 |
|
| >TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein; InterPro: IPR012840 This enzyme is a member of the radical-SAM family | Back alignment and domain information |
|---|
Probab=98.21 E-value=4.1e-05 Score=53.95 Aligned_cols=158 Identities=20% Similarity=0.316 Sum_probs=111.3 Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCC---CCCCCCCCHHHHHHHHHHHHHCCC-EEEEEECCCCCCCCCCHHH-HHHHHHH Q ss_conf 6453078683423212433547775---641000685799999999996498-3899730368887442899-9998876 Q gi|254780485|r 57 LLNIKTGGCPENCGYCNQSVHNKSK---LKASKLINVDQVLKEAKNAKENGA-TRYCMGAAWREPKERDLSI-IVDMIKG 131 (328) Q Consensus 57 ~in~~TN~C~~~C~fCaf~~~~~~~---~~~~~~~~~Eei~~~a~~~~~~G~-~~~~l~~~~~~~~~~~~~~-~~e~i~~ 131 (328) T Consensus 20 ~iF--~~GCn~~CpyC----HN~~~~~~~~~~~~~~~e~~~~~L~~--R~~ll~gVVi-tGGEptl---Q~~eL~d~~~~ 87 (220) T TIGR02495 20 TIF--FQGCNLKCPYC----HNSELLIPRKGSGEIELEELLEFLRR--RQGLLDGVVI-TGGEPTL---QAGELGDFLRE 87 (220) T ss_pred EEE--ECCCCCCCCCC----CCCCCHHHHCCCCCCCHHHHHHHHHH--CCCCEEEEEE-ECCCHHH---HHHHHHHHHHH T ss_conf 887--02788998788----88764002005761027779999873--1342105787-2875323---67778999999 Q ss_pred HCC-CCCCEEEECCCCCHHHHHHHHCCC-CCEEEEECCCCHHHHHCCCCC--------------CC----HHHHHHHHHH Q ss_conf 213-688324102569999999874157-606975134377773205888--------------89----8999999999 Q gi|254780485|r 132 VKS-LGLETCMTLGMLSFEQAQILSKAG-LDYYNHNIDTSERFYPHVTTT--------------HT----FEDRLQTLEN 191 (328) Q Consensus 132 i~~-~~~~i~~~~g~~~~~~~~~Lk~aG-~~~~~~~let~~~~~~~~~~~--------------~~----~~~~l~~~~~ 191 (328) T Consensus 88 v~~nlGf~vkLdTNG~~P~~L~~ll~~gLvD~va~D~Kap~~~y~~~~G~~~~~~~~~tnisPsrtPe~l~~~~~~SlEi 167 (220) T TIGR02495 88 VRENLGFEVKLDTNGSNPRVLEELLEEGLVDYVAMDVKAPPEKYGELYGREKNAAKKETNISPSRTPEKLLKNILKSLEI 167 (220) T ss_pred HHHHCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEECCCCHHHCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH T ss_conf 99865927856067886789999986048757875014786567400063321003532468775658999998755675 Q ss_pred HHHCC----CC--CCCEEEECCCCCHHHHHHHHHHHHHCCC Q ss_conf 99879----85--5770786689899999999999974088 Q gi|254780485|r 192 VRKSG----IK--VCCGGILGLGEMIDDRIDMLLTLANLST 226 (328) Q Consensus 192 a~~~G----~~--~~sg~l~G~gEt~eeri~~l~~lr~l~~ 226 (328) T Consensus 168 l~~s~GCGGi~fE~RTTV~~~~~~Geed~~ei~~~i~~~~~ 208 (220) T TIGR02495 168 LLESGGCGGIEFELRTTVVRGLLDGEEDLAEIATRIKENGV 208 (220) T ss_pred HHHCCCCCCCCCEEECCCCHHHHCCCHHHHHHHHHHCCCCC T ss_conf 54247868865324456552541652789999976322440 |
It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, IPR009161 from INTERPRO) and presumably fulfils the identical function as NrdG , , which utilises S-adenosyl methionine, an iron-sulphur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centred radical in NrdD.. |
| >COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0008 Score=45.28 Aligned_cols=165 Identities=16% Similarity=0.203 Sum_probs=92.8 Q ss_pred EEEECCCCCCCCCCCCCCCCCC-CCCCCCCCCCCHHHHHHHHHHHHH-C--CCEEEEEECCCCCCCCCCHHHHHHHHHHH Q ss_conf 6453078683423212433547-775641000685799999999996-4--98389973036888744289999988762 Q gi|254780485|r 57 LLNIKTGGCPENCGYCNQSVHN-KSKLKASKLINVDQVLKEAKNAKE-N--GATRYCMGAAWREPKERDLSIIVDMIKGV 132 (328) Q Consensus 57 ~in~~TN~C~~~C~fCaf~~~~-~~~~~~~~~~~~Eei~~~a~~~~~-~--G~~~~~l~~~~~~~~~~~~~~~~e~i~~i 132 (328) T Consensus 32 ~inp-y~GC~h~C~YCYa~~~~~~~~~~~~~v~vk~n~~e~l~~el~~~~~k~~~i~is~~TD--pyqp~E~~~~ltR~i 108 (297) T COG1533 32 TLNP-YRGCSHGCIYCYARPMHGYLPKSPTKVNVKENLLELLERELRKPGPKRTVIAISSVTD--PYQPIEKEYRLTRKI 108 (297) T ss_pred ECCC-CCCCCCCCCEEECCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCCCEEEEEECCCC--CCCCHHHHHHHHHHH T ss_conf 3377-4787788841336201466567860554015699999988752467855999854688--885647787899999 Q ss_pred ----CCCCCCEEEEC-CCC---CHHHHHHHHCCCCCEEEEECCCC-HHHHHCCCCC-CCHHHHHHHHHHHHHCCCCCCCE Q ss_conf ----13688324102-569---99999987415760697513437-7773205888-89899999999999879855770 Q gi|254780485|r 133 ----KSLGLETCMTL-GML---SFEQAQILSKAGLDYYNHNIDTS-ERFYPHVTTT-HTFEDRLQTLENVRKSGIKVCCG 202 (328) Q Consensus 133 ----~~~~~~i~~~~-g~~---~~~~~~~Lk~aG~~~~~~~let~-~~~~~~~~~~-~~~~~~l~~~~~a~~~G~~~~sg 202 (328) T Consensus 109 lei~~~~~~~v~I~TKS~lv~RDld~l~~~~~~~~v~V~~Sitt~d~~l~k~~EP~apsp~~Ri~al~~l~eaGi~~~v- 187 (297) T COG1533 109 LEILLKYGFPVSIVTKSALVLRDLDLLLELAERGKVRVAVSITTLDEELAKILEPRAPSPEERLEALKELSEAGIPVGL- 187 (297) T ss_pred HHHHHHCCCCEEEEECCCCHHCCHHHHHHHCCCCCEEEEEEEECCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEE- T ss_conf 9998853996799977741010278998401126518999951684888986589996989999999999987984899- Q ss_pred EEECC---CCCHHHHHHHHHHHHHCCC Q ss_conf 78668---9899999999999974088 Q gi|254780485|r 203 GILGL---GEMIDDRIDMLLTLANLST 226 (328) Q Consensus 203 ~l~G~---gEt~eeri~~l~~lr~l~~ 226 (328) T Consensus 188 -~v~PIiP~~~d~e~e~~l~~~~~ag~ 213 (297) T COG1533 188 -FVAPIIPGLNDEELERILEAAAEAGA 213 (297) T ss_pred -EEECCCCCCCHHHHHHHHHHHHHCCC T ss_conf -98553078875889999999997577 |
|
| >TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.11 Score=30.84 Aligned_cols=140 Identities=14% Similarity=0.071 Sum_probs=62.1 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE-EECCCCCCCCCCHHHHHHHHHHH-CCCCCCEE Q ss_conf 86834232124335477756410006857999999999964983899-73036888744289999988762-13688324 Q gi|254780485|r 63 GGCPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYC-MGAAWREPKERDLSIIVDMIKGV-KSLGLETC 140 (328) Q Consensus 63 N~C~~~C~fCaf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~-l~~~~~~~~~~~~~~~~e~i~~i-~~~~~~i~ 140 (328) T Consensus 82 r~C~N~C~FCFidQlP~GmR~sLY~KDDD--------------yRLSFL~GNfiTLTNl~e~D~~RIi~~rLSPl~ISVH 147 (433) T TIGR03279 82 IQCNNRCPFCFIDQQPPGKRESLYLKDDD--------------YRLSFLYGSYLTLTNLPPAEWQRIEQLRLSPLYVSVH 147 (433) T ss_pred HHCCCCCCEEEECCCCCCCCCCEEEECCC--------------EEEEEECCCEEEEECCCHHHHHHHHHHCCCCEEEEEE T ss_conf 33177785686466885554641462486--------------3453201525765179989999999825786389986 Q ss_pred EECC------------CCCHHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCC-CHHHHHHHHHHHHHCC------CCCCC Q ss_conf 1025------------699999998741576069751343777732058888-9899999999999879------85577 Q gi|254780485|r 141 MTLG------------MLSFEQAQILSKAGLDYYNHNIDTSERFYPHVTTTH-TFEDRLQTLENVRKSG------IKVCC 201 (328) Q Consensus 141 ~~~g------------~~~~~~~~~Lk~aG~~~~~~~let~~~~~~~~~~~~-~~~~~l~~~~~a~~~G------~~~~s 201 (328) T Consensus 148 aT~pelR~~mL~n~~ag~il~~l~~L~~~gI~~h~Q---------IVLCPGiNDG~~L~rTi~DL~~~~~~~~P~v~Sva 218 (433) T TIGR03279 148 ATEPSLRARLLKNPRAGLILEQLKWFQERRLQLHAQ---------VVVCPGINDGKHLERTLRDLAQFHDGDWPTVLSVA 218 (433) T ss_pred CCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEE---------EEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEE T ss_conf 399899999876995789999999999769879847---------99879967669999899999986124688425777 Q ss_pred EEEECCC-----------CCHHHHHHHHHHHHHCC Q ss_conf 0786689-----------89999999999997408 Q gi|254780485|r 202 GGILGLG-----------EMIDDRIDMLLTLANLS 225 (328) Q Consensus 202 g~l~G~g-----------Et~eeri~~l~~lr~l~ 225 (328) T Consensus 219 vVPVGlTk~R~~l~~l~~~~~e~A~~vi~~ve~~Q 253 (433) T TIGR03279 219 VVPVGLTRFRPEEDELTPVTPECARRVIAQVEALQ 253 (433) T ss_pred EEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 88324213578999872189999999999999999 |
Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis. |
| >COG1964 Predicted Fe-S oxidoreductases [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.7 Score=25.59 Aligned_cols=137 Identities=18% Similarity=0.197 Sum_probs=77.6 Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCC-CEEEEC-C---C Q ss_conf 243354777564100068579999999999649-838997303688874428999998876213688-324102-5---6 Q gi|254780485|r 72 CNQSVHNKSKLKASKLINVDQVLKEAKNAKENG-ATRYCMGAAWREPKERDLSIIVDMIKGVKSLGL-ETCMTL-G---M 145 (328) Q Consensus 72 Caf~~~~~~~~~~~~~~~~Eei~~~a~~~~~~G-~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~-~i~~~~-g---~ 145 (328) T Consensus 78 CFa~A~~a--g~vY-Ept~eqi~~Ml~~lk~e~p~~~~aIq~tGGEPTv--r~DL~eiv~~a~e~g~~hVqinTnGirlA 152 (475) T COG1964 78 CFAYAEEA--GYIY-EPTLEQIREMLRNLKKEHPVGANAVQFTGGEPTL--RDDLIEIIKIAREEGYDHVQLNTNGIRLA 152 (475) T ss_pred CCCCHHHC--CCCC-CCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCC--HHHHHHHHHHHHHCCCCEEEECCCCEEEC T ss_conf 75764326--8614-7779999999999985389998326722898664--35589999977656861899825750201 Q ss_pred CCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCCCCC---CCEEEECCCC-CHHHHHHHH Q ss_conf 99999998741576069751343-7777320588889899999999999879855---7707866898-999999999 Q gi|254780485|r 146 LSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSGIKV---CCGGILGLGE-MIDDRIDML 218 (328) Q Consensus 146 ~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~---~sg~l~G~gE-t~eeri~~l 218 (328) T Consensus 153 ~~~~~~~~l~~ag~~tvYlsFDG~~e~~~~~~----~~eIk~-alen~r~~g~~svVLVptl~rgvNd~~lG~iirfa 225 (475) T COG1964 153 FDPEYVKKLREAGVNTVYLSFDGVTPKTNWKN----HWEIKQ-ALENCRKAGLPSVVLVPTLIRGVNDHELGAIIRFA 225 (475) T ss_pred CCHHHHHHHHHCCCCEEEEECCCCCCCCHHHH----HHHHHH-HHHHHHHCCCCCEEEEEHHHCCCCHHHHHHHHHHH T ss_conf 37789988986588579994278998621767----755689-99987754887289971052156747777899998 |
|
| >PRK08195 4-hydroxy-2-ketovalerate aldolase; Validated | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.0002 Score=49.26 Aligned_cols=214 Identities=14% Similarity=0.114 Sum_probs=139.7 Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEECCC---------CCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHC Q ss_conf 00685799999999996498389973036---------888744289999988762136883241025699999998741 Q gi|254780485|r 86 KLINVDQVLKEAKNAKENGATRYCMGAAW---------REPKERDLSIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSK 156 (328) Q Consensus 86 ~~~~~Eei~~~a~~~~~~G~~~~~l~~~~---------~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g~~~~~~~~~Lk~ 156 (328) T Consensus 20 ~~fs~e~k~~ia~~Ld~aGVd~IEVghg~gl~~ss~~~g~~~~~d~e~i~~~~~~~~~aki~~l~~pg~~~~~dl~~A~~ 99 (337) T PRK08195 20 HQYTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAADVVKQAKLATLLLPGIGTIEDLKMAYD 99 (337) T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHH T ss_conf 98899999999999998098999944788877753346787798399999999974328378996356555888999995 Q ss_pred CCCCEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCE Q ss_conf 57606975134377773205888898999999999998798557707866898999999999999740888860205411 Q gi|254780485|r 157 AGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLL 236 (328) Q Consensus 157 aG~~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~ 236 (328) T Consensus 100 ~gv~~vria~~~te-----------ad~~~~~i~~ar~~G~~v~~~lm~s~~~~~e~l~~~a~~~~~~Ga--d~I~---- 162 (337) T PRK08195 100 AGVRVVRVATHCTE-----------ADVSEQHIGLARELGMDTVGFLMMSHMASPEKLAEQAKLMESYGA--QCVY---- 162 (337) T ss_pred CCCCEEEEEEECCH-----------HHHHHHHHHHHHHCCCEEEEEEHHCCCCCHHHHHHHHHHHHHCCC--CEEE---- T ss_conf 79897999863148-----------877999999999779939997511024899999999999986599--9999---- Q ss_pred EECCCCCCCCCCCCCHHHHHHHHHHHHHHC-CCCCCEEEEHHHHHCH--HHHHHHHHHCCC---EEE--ECCEEECCCCC Q ss_conf 204874124456879899999999999968-6872142311565165--689999980998---899--77866515888 Q gi|254780485|r 237 IPIPGSKFEENKKVDPIEHVRIISVARILM-PKSRLRLAAGRAMMSD--ELQALCFFSGAN---SIF--VGDTLLTAKNP 308 (328) Q Consensus 237 ~p~~gt~l~~~~~~~~~e~lr~iAi~RL~l-P~~~i~i~~~~~~~~~--~~~~~~L~~GaN---~~~--~g~~~~t~~g~ 308 (328) T Consensus 163 --l~DT----~G~~~P~~v~~~v~~l~~~l~~~i~igfH~-HNnlGlAvANslaAveaGA~~ID~Ti~GlGe---gAGNa 232 (337) T PRK08195 163 --VVDS----AGALLPDDVRARVRALRAALKPDTQVGFHG-HHNLGLGVANSLAAVEAGADRIDASLAGFGA---GAGNA 232 (337) T ss_pred --ECCC----CCCCCHHHHHHHHHHHHHHCCCCCEEEEEE-CCCCCHHHHHHHHHHHCCCCEEEEECCCCCC---CCCCH T ss_conf --7898----766799999999999998649985499985-3886759999999998099999850534488---87873 Q ss_pred CHHHHHHHHHHCCCCCCC Q ss_conf 989999999982985324 Q gi|254780485|r 309 SYNKDTILFNRLGLIPDL 326 (328) Q Consensus 309 ~~~~~~~~i~~~G~~P~~ 326 (328) T Consensus 233 ~lE~lva~l~r~g~~~g~ 250 (337) T PRK08195 233 PLEVLVAVLDRMGWETGV 250 (337) T ss_pred HHHHHHHHHHHCCCCCCC T ss_conf 899999999746986587 |
|
| >TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00024 Score=48.83 Aligned_cols=213 Identities=15% Similarity=0.125 Sum_probs=142.7 Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEECCC---------CCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHC Q ss_conf 00685799999999996498389973036---------888744289999988762136883241025699999998741 Q gi|254780485|r 86 KLINVDQVLKEAKNAKENGATRYCMGAAW---------REPKERDLSIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSK 156 (328) Q Consensus 86 ~~~~~Eei~~~a~~~~~~G~~~~~l~~~~---------~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g~~~~~~~~~Lk~ 156 (328) T Consensus 19 ~~fs~e~k~~ia~~Ld~aGVd~IEvg~g~g~~~ss~~~g~~~~~d~e~i~~~~~~~~~ak~~~l~~pg~~~~~dl~~a~~ 98 (333) T TIGR03217 19 HQFTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLPGIGTVHDLKAAYD 98 (333) T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH T ss_conf 99899999999999997198989960688888874335788899499999999874248056996478666999999996 Q ss_pred CCCCEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCE Q ss_conf 57606975134377773205888898999999999998798557707866898999999999999740888860205411 Q gi|254780485|r 157 AGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLL 236 (328) Q Consensus 157 aG~~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~ 236 (328) T Consensus 99 ~gv~~vri~~~~te~-----------d~~~~~i~~ak~~G~~v~~~~~~s~~~~~e~l~~~a~~~~~~Ga--d~I~---- 161 (333) T TIGR03217 99 AGARTVRVATHCTEA-----------DVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGA--DCVY---- 161 (333) T ss_pred CCCCEEEEEECCCHH-----------HHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCC--CEEE---- T ss_conf 699978986316678-----------88999999999769809999750568999999999999985699--9999---- Q ss_pred EECCCCCCCCCCCCCHHHHHHHHHHHHHHC-CCCCCEEEEHHHHHC--HHHHHHHHHHCCC---EEE--ECCEEECCCCC Q ss_conf 204874124456879899999999999968-687214231156516--5689999980998---899--77866515888 Q gi|254780485|r 237 IPIPGSKFEENKKVDPIEHVRIISVARILM-PKSRLRLAAGRAMMS--DELQALCFFSGAN---SIF--VGDTLLTAKNP 308 (328) Q Consensus 237 ~p~~gt~l~~~~~~~~~e~lr~iAi~RL~l-P~~~i~i~~~~~~~~--~~~~~~~L~~GaN---~~~--~g~~~~t~~g~ 308 (328) T Consensus 162 --i~DT----~G~~~P~~v~~~v~~l~~~~~~~i~ig~H~-HNnlGlAvANslaAi~aGa~~VD~Ti~GlGe---~aGNa 231 (333) T TIGR03217 162 --IVDS----AGAMLPDDVRDRVRALKAVLKPETQVGFHA-HHNLSLAVANSIAAIEAGATRIDASLRGLGA---GAGNA 231 (333) T ss_pred --ECCC----CCCCCHHHHHHHHHHHHHHCCCCCEEEEEE-ECCCCHHHHHHHHHHHCCCCEEEECCCCCCC---CCCCC T ss_conf --7596----446899999999999998629975488986-1787729999999998199999762744889---88873 Q ss_pred CHHHHHHHHHHCCCCCC Q ss_conf 98999999998298532 Q gi|254780485|r 309 SYNKDTILFNRLGLIPD 325 (328) Q Consensus 309 ~~~~~~~~i~~~G~~P~ 325 (328) T Consensus 232 ~lE~lVa~l~~~g~~tg 248 (333) T TIGR03217 232 PLEVFVAVLDRLGWNTG 248 (333) T ss_pred HHHHHHHHHHCCCCCCC T ss_conf 49999999961798658 |
Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated. |
| >pfam00682 HMGL-like HMGL-like | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00044 Score=47.00 Aligned_cols=217 Identities=16% Similarity=0.151 Sum_probs=138.3 Q ss_pred CCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCC-CCHHHHHHHHCCCCCEEEEE Q ss_conf 06857999999999964983899730368887442899999887621368832410256-99999998741576069751 Q gi|254780485|r 87 LINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTLGM-LSFEQAQILSKAGLDYYNHN 165 (328) Q Consensus 87 ~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g~-~~~~~~~~Lk~aG~~~~~~~ 165 (328) T Consensus 10 ~~~~e~K~~i~~~L~~~Gv~~IEvg~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~g~~~i~i~ 87 (237) T pfam00682 10 AFSVEEKLAIARALDEAGVDEIEVGFPF--MSPTDFESVRAIAEVLKKAKIQALLRPVEHDIDAAVEAAKGAGADRVHVF 87 (237) T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCC--CCCCHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHHCCCCEEEEE T ss_conf 9899999999999998498989995775--89735999997765025875101000341049999999996799999996 Q ss_pred CCCCHHHHHCCC---CCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCC Q ss_conf 343777732058---88898999999999998798557707866898999999999999740888860205411204874 Q gi|254780485|r 166 IDTSERFYPHVT---TTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGS 242 (328) Q Consensus 166 let~~~~~~~~~---~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt 242 (328) T Consensus 88 ~~~se~~~~~n~~~s~~~~l~~~~~~i~~a~~~g~~v~f~~~~~~~~~~~~~~~~~~~~~~~G~--~~i~------l~DT 159 (237) T pfam00682 88 IATSDLHRKYKLNKDREEVADRAVAAVEAARSAGIDVELGCEDAGRTDLAFLIEVVEVAQEAGA--TRIN------IADT 159 (237) T ss_pred EECCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCC--CEEE------ECCC T ss_conf 1057878998857899999999999999999869905884051232478899999999986198--5797------3686 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHH--CHHHHHHHHHHCCC---EEE--ECCEEECCCCCCHHHHHH Q ss_conf 12445687989999999999996868721423115651--65689999980998---899--778665158889899999 Q gi|254780485|r 243 KFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMM--SDELQALCFFSGAN---SIF--VGDTLLTAKNPSYNKDTI 315 (328) Q Consensus 243 ~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~--~~~~~~~~L~~GaN---~~~--~g~~~~t~~g~~~~~~~~ 315 (328) T Consensus 160 ----~G~~~P~~v~~lv~~l~~~~~~~~i~~H~-Hn~~Gla~aN~l~A~~aG~~~id~si~GlG~---~~Gn~~te~lv~ 231 (237) T pfam00682 160 ----VGVLTPNEAADLISALKDRVPPVIIEVHC-HNDLGMAVANSLAAVEAGADRVDGTVNGLGE---RAGNAALEELVA 231 (237) T ss_pred ----CCCCCHHHHHHHHHHHHHCCCCCCEEEEE-CCCCCHHHHHHHHHHHHCCCEEEECCCCCCC---CCCCHHHHHHHH T ss_conf ----45579899999999999708987158874-4886729999999999689999877503155---426764999999 Q ss_pred HHHHCC Q ss_conf 999829 Q gi|254780485|r 316 LFNRLG 321 (328) Q Consensus 316 ~i~~~G 321 (328) T Consensus 232 ~L~~~G 237 (237) T pfam00682 232 ALEVLG 237 (237) T ss_pred HHHHCC T ss_conf 998577 |
This family contains a diverse set of enzymes. These include various aldolases and a region of pyruvate carboxylase. |
| >PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0032 Score=41.25 Aligned_cols=219 Identities=15% Similarity=0.158 Sum_probs=133.0 Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEECCCCC---CCCCCHHHHHHHHHHHCCC-CCCEEEECCCCCHHHHHHHHCCCCCE Q ss_conf 0068579999999999649838997303688---8744289999988762136-88324102569999999874157606 Q gi|254780485|r 86 KLINVDQVLKEAKNAKENGATRYCMGAAWRE---PKERDLSIIVDMIKGVKSL-GLETCMTLGMLSFEQAQILSKAGLDY 161 (328) Q Consensus 86 ~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~---~~~~~~~~~~e~i~~i~~~-~~~i~~~~g~~~~~~~~~Lk~aG~~~ 161 (328) T Consensus 21 ~~~s~e~K~~ia~~L~~~Gv~~IEvgsfvspk~vP~~~d~~e---v~~~i~~~~~~~~--~~l~~n~~g~~~A~~~g~~~ 95 (287) T PRK05692 21 RFIPTADKIALIDRLSAAGLSYIEVASFVSPKWVPQMADAAE---VMAGIQRRPGVTY--AALTPNLKGLEAALAAGADE 95 (287) T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHCCHHH---HHHHHHCCCCCEE--EEECCCHHHHHHHHHCCCCE T ss_conf 984999999999999984999999668778230213167999---9987640679678--66436404279999779898 Q ss_pred EEEECCCCHHHHHC-CCCC--CCHHHHHHHHHHHHHCCCCCCC--EEEECC---CC-CHHHHHHHHHHHHHCCCCCCEEE Q ss_conf 97513437777320-5888--8989999999999987985577--078668---98-99999999999974088886020 Q gi|254780485|r 162 YNHNIDTSERFYPH-VTTT--HTFEDRLQTLENVRKSGIKVCC--GGILGL---GE-MIDDRIDMLLTLANLSTPPESIP 232 (328) Q Consensus 162 ~~~~let~~~~~~~-~~~~--~~~~~~l~~~~~a~~~G~~~~s--g~l~G~---gE-t~eeri~~l~~lr~l~~~~~~v~ 232 (328) T Consensus 96 i~i~~~~Sd~h~~~nl~~t~~e~l~~~~~~i~~a~~~g~~v~~~i~~afg~p~~~~~~~~~l~~~~~~~~~~Ga~--~I- 172 (287) T PRK05692 96 VAVFASASEAFSQKNINCSIAESLARFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADVAERLFALGCD--EI- 172 (287) T ss_pred EEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCC--EE- T ss_conf 999974179999987479999999999999999997698799987401367646864899999999999857997--85- Q ss_pred CCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHH--HCHHHHHHHHHHCCC---EEEE--C------ Q ss_conf 54112048741244568798999999999999686872142311565--165689999980998---8997--7------ Q gi|254780485|r 233 INLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAM--MSDELQALCFFSGAN---SIFV--G------ 299 (328) Q Consensus 233 ~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~--~~~~~~~~~L~~GaN---~~~~--g------ 299 (328) T Consensus 173 -----~laDT----~G~a~P~~v~~~i~~v~~~~~~~~i~~H~-Hnd~Gma~AN~laAv~aGa~~vd~tv~GlGgcPfap 242 (287) T PRK05692 173 -----SLGDT----IGVGTPGQVRRVLEAVLAEFPAERLAGHF-HDTYGQALANIYASLEEGITVFDASVGGLGGCPYAP 242 (287) T ss_pred -----ECCCC----CCCCCHHHHHHHHHHHHHHCCCCCEEEEE-CCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCC T ss_conf -----44765----56669999999999999866887235674-487306999999999809998988554777999999 Q ss_pred CEEECCCCCCHHHHHHHHHHCCCCCC Q ss_conf 86651588898999999998298532 Q gi|254780485|r 300 DTLLTAKNPSYNKDTILFNRLGLIPD 325 (328) Q Consensus 300 ~~~~t~~g~~~~~~~~~i~~~G~~P~ 325 (328) T Consensus 243 ~---~aGN~~tE~lv~~l~~~G~~Tg 265 (287) T PRK05692 243 G---ATGNVATEDVLYMLHGLGIETG 265 (287) T ss_pred C---CCCCHHHHHHHHHHHHCCCCCC T ss_conf 8---7678669999999996599669 |
|
| >pfam05853 DUF849 Prokaryotic protein of unknown function (DUF849) | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.019 Score=36.11 Aligned_cols=231 Identities=15% Similarity=0.155 Sum_probs=127.7 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCC--CCCCCCCHHHHHHHHHHHCCC--CCCEEEECC----CCCHHH Q ss_conf 775641000685799999999996498389973036--888744289999988762136--883241025----699999 Q gi|254780485|r 79 KSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAW--REPKERDLSIIVDMIKGVKSL--GLETCMTLG----MLSFEQ 150 (328) Q Consensus 79 ~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~--~~~~~~~~~~~~e~i~~i~~~--~~~i~~~~g----~~~~~~ 150 (328) T Consensus 15 k~~~P~-lP~Tp~Eia~~A~~c~~AGAsivH~HvRd~~dG~~s~d~~~y~e~i~~Ir~~~pd~ii~~Ttg~~~~~~~eeR 93 (274) T pfam05853 15 PSDSPA-LPVTPEEIAEEAVAAAEAGAAIVHLHVRDPEDGRPSQDPELFREVLERIREAVPDVIINLTTGGSPGMTVEER 93 (274) T ss_pred CCCCCC-CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHH T ss_conf 233999-9899899999999999708738998844788899068899999999999987899689945787788988899 Q ss_pred HHHHHCCCCCEEEEECCCCH-HHH-HCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCC Q ss_conf 99874157606975134377-773-2058888989999999999987985577078668989999999999997408888 Q gi|254780485|r 151 AQILSKAGLDYYNHNIDTSE-RFY-PHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPP 228 (328) Q Consensus 151 ~~~Lk~aG~~~~~~~let~~-~~~-~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~ 228 (328) T Consensus 94 ~~~v~~~~Pd~aSl~~gs~nf~~~~~d~v~~n~~~~~~~~~~~~~~~gi~pe~-e~yd~g-----~l~~~~~l~~~G~l~ 167 (274) T pfam05853 94 LAPVEALRPEMASLNMGSMNFGLYSRDMVFPNTPADVEEFAARMQEAGVKPEF-ECFDVG-----HLRNAARLLKRGLLK 167 (274) T ss_pred HHHHHHCCCCEEEECCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHCCCCEEE-EEECHH-----HHHHHHHHHHHCCCC T ss_conf 99998609885774466643565677720139999999999999985991499-997799-----999999999708889 Q ss_pred CEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCC-EEEECCEEECCCC Q ss_conf 602054112048741244568798999999999999686872142311565165689999980998-8997786651588 Q gi|254780485|r 229 ESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGAN-SIFVGDTLLTAKN 307 (328) Q Consensus 229 ~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN-~~~~g~~~~t~~g 307 (328) T Consensus 168 ~p~~~~~v---lG~~~--g~~~~p~~L~~~l~----~lp~~~~w~v~~~G~~~~~~~~~A~~~GGhvRVGlEDn~~~~~G 238 (274) T pfam05853 168 GPLFVQFV---LGVLG--GMPADPENLLHMLR----TLPRGATWSVAGIGRNQLPLAAAAAALGGHVRVGLEDNLYLDKG 238 (274) T ss_pred CCCEEEEE---ECCCC--CCCCCHHHHHHHHH----CCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEECCCCCCCCCC T ss_conf 99579999---62687--89999999999996----38789718999517544499999998099648705655337899 Q ss_pred C-------CHHHHHHHHHHCCCCCC Q ss_conf 8-------98999999998298532 Q gi|254780485|r 308 P-------SYNKDTILFNRLGLIPD 325 (328) Q Consensus 308 ~-------~~~~~~~~i~~~G~~P~ 325 (328) T Consensus 239 ~~A~sNaelV~~~~~ia~~~gr~iA 263 (274) T pfam05853 239 VLAPSNAQLVERAVRIARELGREVA 263 (274) T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCC T ss_conf 8896889999999999998599989 |
This family consists of several hypothetical prokaryotic proteins with no known function. |
| >PRK11858 aksA trans-homoaconitate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.12 Score=30.81 Aligned_cols=215 Identities=14% Similarity=0.151 Sum_probs=120.2 Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCC--CEEEECCCCCHHHHHHHHCCCCCEEE Q ss_conf 0068579999999999649838997303688874428999998876213688--32410256999999987415760697 Q gi|254780485|r 86 KLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGL--ETCMTLGMLSFEQAQILSKAGLDYYN 163 (328) Q Consensus 86 ~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~--~i~~~~g~~~~~~~~~Lk~aG~~~~~ 163 (328) T Consensus 21 ~~fs~~~K~~ia~~L~~~GV~~IEvG--~P~~~~~e~----~~~~~i~~~~l~~~i~~-~~R~~~~di~~a~~~g~~~v~ 93 (378) T PRK11858 21 VVFTNEEKLAIARMLDEIGVDQIEAG--FPAVSEDEK----EAIKAIAKLGLNASILA-WNRAVKSDIDASIDCGVDAVH 93 (378) T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEE--CCCCCCCHH----HHHHHHHHCCCCCEEEE-ECCCCHHHHHHHHHCCCCEEE T ss_conf 99999999999999998198999994--777783489----99999985679845887-403578779999857969899 Q ss_pred EECCCCHHHHHCCCCCCCHHH----HHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEEC Q ss_conf 513437777320588889899----9999999998798557707866898999999999999740888860205411204 Q gi|254780485|r 164 HNIDTSERFYPHVTTTHTFED----RLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPI 239 (328) Q Consensus 164 ~~let~~~~~~~~~~~~~~~~----~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~ 239 (328) T Consensus 94 i~~~~Sd~h~~~~l-~~t~~e~l~~~~~~v~~Ak~~Gl~v~f~~eD~~r~~~~~l~~~~~~a~~~Ga--d~I------~l 164 (378) T PRK11858 94 IFIATSDIHLKYKL-KKTREEVLERLVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEAAKAAEEAGA--DRV------RF 164 (378) T ss_pred EEECCCHHHHHHHH-CCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCC--CEE------EE T ss_conf 99606799999996-8998999999999999999769869994401256899999999999997499--899------96 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHC--HHHHHHHHHHCCC---EEE--ECCEEECCCCCCHHH Q ss_conf 874124456879899999999999968687214231156516--5689999980998---899--778665158889899 Q gi|254780485|r 240 PGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMS--DELQALCFFSGAN---SIF--VGDTLLTAKNPSYNK 312 (328) Q Consensus 240 ~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~--~~~~~~~L~~GaN---~~~--~g~~~~t~~g~~~~~ 312 (328) T Consensus 165 ~DT----~G~~~P~~v~~~v~~l~~~~~-~~i~~H~-HNd~GlAvANalaAv~AGa~~v~~Tv~GiGE---RaGNa~le~ 235 (378) T PRK11858 165 CDT----VGILDPFTMYELVKELVEAVD-IPIEVHC-HNDFGMATANAIAGIEAGATQVHTTVNGLGE---RAGNAALEE 235 (378) T ss_pred CCC----CCCCCHHHHHHHHHHHHHHCC-CCEEEEE-ECCCCHHHHHHHHHHHHCCCEEEEEEEEEEC---CCCCCCHHH T ss_conf 365----566699999999999997269-8559997-0775559999999998099989987544654---656614999 Q ss_pred HHHHHH-HCCCCCC Q ss_conf 999999-8298532 Q gi|254780485|r 313 DTILFN-RLGLIPD 325 (328) Q Consensus 313 ~~~~i~-~~G~~P~ 325 (328) T Consensus 236 v~~~L~~~~~~~~~ 249 (378) T PRK11858 236 VVMALKYLYGIDLG 249 (378) T ss_pred HHHHHHHHCCCCCC T ss_conf 99999974497766 |
|
| >PRK05211 consensus | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.22 Score=28.96 Aligned_cols=215 Identities=11% Similarity=0.113 Sum_probs=115.1 Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHH-CCCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCC-- Q ss_conf 99999999996498389973036888744289999988762-136883241025699999998741576069751343-- Q gi|254780485|r 92 QVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGV-KSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDT-- 168 (328) Q Consensus 92 ei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i-~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let-- 168 (328) T Consensus 22 DP~~~ak~~~~~gadelhivDld~a~~g~~--~n~~~I~~i~~~~~~Pl~vGGGIrs~~~i~~ll~~GadkViigs~a~~ 99 (248) T PRK05211 22 DIVPLAKRYAEEGADELVFYDITASSDGRV--VDKSWVSRVAEVIDIPFCVAGGIKSVEDAREILSFGADKISINSPALA 99 (248) T ss_pred CHHHHHHHHHHCCCCEEEEEECCCCCCCCC--CHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEEECCHHHH T ss_conf 999999999986999899997867767872--149999999976798589627801389999999879988998976761 Q ss_pred CHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECC-C------CCHHHHHHHHHHHHHCCCCCCEEECCCEEECCC Q ss_conf 777732058888989999999999987985577078668-9------899999999999974088886020541120487 Q gi|254780485|r 169 SERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGL-G------EMIDDRIDMLLTLANLSTPPESIPINLLIPIPG 241 (328) Q Consensus 169 ~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~-g------Et~eeri~~l~~lr~l~~~~~~v~~~~~~p~~g 241 (328) T Consensus 100 np~li~~~~~~fG~q~IvvsiD-~-~~~~~~~~~~v~~~~g~~~~~~~t~~~~~d~i~~~~~~G~--geIl~t-~IdrDG 174 (248) T PRK05211 100 DPTLITRLADRFGVQCIVVGID-S-WFDAETGKYQVYQYTGDESRTKATQWETLDWVKEVQKRGA--GEIVLN-MMNQDG 174 (248) T ss_pred CCHHHHHHHHHCCCCEEEEEEE-E-ECCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCC--CEEEEE-EECCCC T ss_conf 9618999998579936999997-1-0255578579998258656530477369999999997598--669998-987899 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCCCCHHHHHHHHHHCC Q ss_conf 41244568798999999999999686872142311565165689999980998899778665158889899999999829 Q gi|254780485|r 242 SKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYNKDTILFNRLG 321 (328) Q Consensus 242 t~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~~~~~~~~i~~~G 321 (328) T Consensus 175 ~-~~---G~-dl~l~~~i~~--~--~~iPvIasGGv~s-~~di~~~~~~~~~~gvi~gs~~-~~~~i~l~e~k~~L~~~g 243 (248) T PRK05211 175 V-RN---GY-DLAQLKKVRA--I--CHVPLIASGGAGT-MEHFLEAFRDADVDGALAASVF-HKQIINIGELKQYLAAQG 243 (248) T ss_pred C-CC---CC-CHHHHHHHHH--H--CCCCEEEECCCCC-HHHHHHHHHHCCCHHHHHHHHH-HCCCCCHHHHHHHHHHCC T ss_conf 7-27---88-9999999997--4--6999999888899-9999999986798413304888-889999999999999878 Q ss_pred CCC Q ss_conf 853 Q gi|254780485|r 322 LIP 324 (328) Q Consensus 322 ~~P 324 (328) T Consensus 244 i~v 246 (248) T PRK05211 244 IEI 246 (248) T ss_pred CCC T ss_conf 952 |
|
| >PRK03220 consensus | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.27 Score=28.40 Aligned_cols=200 Identities=13% Similarity=0.165 Sum_probs=116.7 Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHH-CCCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCC-- Q ss_conf 99999999996498389973036888744289999988762-136883241025699999998741576069751343-- Q gi|254780485|r 92 QVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGV-KSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDT-- 168 (328) Q Consensus 92 ei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i-~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let-- 168 (328) T Consensus 32 dP~~~a~~~~~~G~d~lhivDld~a-~~-g~~~n~~~I~~i~~~~~~pi~vGGGIrs~e~~~~ll~~GadkVvigs~a~~ 109 (257) T PRK03220 32 DPVELAAVYDAEGADELTFLDVTAS-SS-GRATMLDVVRRTAEQVFIPLTVGGGVRTVEDVDSLLRAGADKVSVNTAAIA 109 (257) T ss_pred CHHHHHHHHHHCCCCEEEEEECCCC-CC-CCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCEEECHHHHHH T ss_conf 9999999999869998999908887-56-763079999999850696489847858799999999819750872066775 Q ss_pred CHHHHHCCCCCCCHHHHHHHHHHHHHCCCC-----------------CCCE-EEECC---CCCHHHHHHHHHHHHHCCCC Q ss_conf 777732058888989999999999987985-----------------5770-78668---98999999999999740888 Q gi|254780485|r 169 SERFYPHVTTTHTFEDRLQTLENVRKSGIK-----------------VCCG-GILGL---GEMIDDRIDMLLTLANLSTP 227 (328) Q Consensus 169 ~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~-----------------~~sg-~l~G~---gEt~eeri~~l~~lr~l~~~ 227 (328) T Consensus 110 ~p~~~~~~---------------~~~fG~q~Iv~siD~k~~~~~~~~~~~g~~v~~~g~~~~t~~~~~~~i~~~~~~g~- 173 (257) T PRK03220 110 RPELLAEL---------------ARRFGSQCIVLSVDARRVPVGSAPTPSGFEVTTHGGRRGTGIDAVEWAARGAELGV- 173 (257) T ss_pred CCHHHHHH---------------HHHCCCEEEEEEEEEEECCCCCCCCCCCEEEEECCCEEECCCCHHHHHHHHHHCCC- T ss_conf 94777899---------------98709866999999886256774346874999728826028759999999862698- Q ss_pred CCEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCC Q ss_conf 86020541120487412445687989999999999996868721423115651656899999809988997786651588 Q gi|254780485|r 228 PESIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKN 307 (328) Q Consensus 228 ~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g 307 (328) T Consensus 174 -geil~-tdI~rDGt-~~G---~-d~~l~~~i~---~~~-~~piIasGGv~s-~~di~~-l~~~g~~gv~~g~a~-~~~~ 239 (257) T PRK03220 174 -GEILL-NSMDADGT-KAG---F-DLEMLRAVR---AAV-TVPVIASGGAGA-VEHFAP-AVAAGADAVLAASVF-HFGE 239 (257) T ss_pred -CEEEE-EEECCCCC-CCC---C-CHHHHHHHH---HHC-CCCEEEECCCCC-HHHHHH-HHHCCCCEEEEHHHH-HCCC T ss_conf -88999-98868660-237---8-969999999---748-999899878999-999999-997899799874687-8899 Q ss_pred CCHHHHHHHHHHCCCC Q ss_conf 8989999999982985 Q gi|254780485|r 308 PSYNKDTILFNRLGLI 323 (328) Q Consensus 308 ~~~~~~~~~i~~~G~~ 323 (328) T Consensus 240 ~s~~~~k~~l~~~~i~ 255 (257) T PRK03220 240 LTIGQVKAALAAAGIT 255 (257) T ss_pred CCHHHHHHHHHHCCCC T ss_conf 8899999999987597 |
|
| >PRK13597 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.28 Score=28.20 Aligned_cols=202 Identities=14% Similarity=0.156 Sum_probs=115.7 Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHH-CCCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCC-- Q ss_conf 99999999996498389973036888744289999988762-136883241025699999998741576069751343-- Q gi|254780485|r 92 QVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGV-KSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDT-- 168 (328) Q Consensus 92 ei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i-~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let-- 168 (328) T Consensus 32 dP~~~a~~~~~~Gad~lhlvDld~a~~~--~~~n~~~I~~i~~~~~vpiqvGGGIrs~e~~~~ll~~GadkViigS~a~~ 109 (252) T PRK13597 32 DPVEAARAYDEAGADELVFLDISATHEE--RAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSVNSAAVR 109 (252) T ss_pred CHHHHHHHHHHCCCCEEEEEECCCCCCC--CHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHHH T ss_conf 9999999999869999999956466668--66379999999862698289847713089999998569877983266674 Q ss_pred CHHHHHCCCCCCCHHHHHHHHHHHHHCCCC-CC----------CEEEECC---CCCHHHHHHHHHHHHHCCCCCCEEECC Q ss_conf 777732058888989999999999987985-57----------7078668---989999999999997408888602054 Q gi|254780485|r 169 SERFYPHVTTTHTFEDRLQTLENVRKSGIK-VC----------CGGILGL---GEMIDDRIDMLLTLANLSTPPESIPIN 234 (328) Q Consensus 169 ~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~-~~----------sg~l~G~---gEt~eeri~~l~~lr~l~~~~~~v~~~ 234 (328) T Consensus 110 np~~i~~~---------------~~~fG~q~Iv~~iD~~~~~~~~~v~~~~~~~~~~~~~~d~~~~~~~~G~--geil~- 171 (252) T PRK13597 110 RPELIREL---------------ADHFGAQAVVLAIDARWRGDFPEVHVAGGRVPTGLHAVEWAVKGVELGA--GEILL- 171 (252) T ss_pred CCHHHHHH---------------HHHCCCCCEEEEEEEEECCCCCEEEECCCEEECCCCHHHHHHHHHHHCC--CEEEE- T ss_conf 93789999---------------9874996529999888618974167538727569769999999996489--99999- Q ss_pred CEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCCCCHHHHH Q ss_conf 11204874124456879899999999999968687214231156516568999998099889977866515888989999 Q gi|254780485|r 235 LLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYNKDT 314 (328) Q Consensus 235 ~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~~~~~~ 314 (328) T Consensus 172 tdI~rDGt-~~---G~d-~~l~~~i~--~~-~-~~pvIasGGv~-s~~dl~~-l~~~g~~gvi~G~-al~~~~~s~~e~k 239 (252) T PRK13597 172 TSMDRDGT-KE---GYD-LRLTRMVA--EA-V-GVPVIASGGAG-RMEHFLE-AFQAGAEAALAAS-VFHFGEIPIPELK 239 (252) T ss_pred EEECCCCC-CC---CCC-HHHHHHHH--HC-C-CCCEEEECCCC-CHHHHHH-HHHCCCCEEEEHH-HHHCCCCCHHHHH T ss_conf 75737684-44---769-59999998--50-7-99899978989-9999999-9878996998712-7677999999999 Q ss_pred HHHHHCCCCCC Q ss_conf 99998298532 Q gi|254780485|r 315 ILFNRLGLIPD 325 (328) Q Consensus 315 ~~i~~~G~~P~ 325 (328) T Consensus 240 ~~L~~~~i~vr 250 (252) T PRK13597 240 RYLAEKGVHVR 250 (252) T ss_pred HHHHHCCCCCC T ss_conf 99998789554 |
|
| >PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.39 Score=27.26 Aligned_cols=214 Identities=15% Similarity=0.195 Sum_probs=100.1 Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC-CCCHHHHHHHHHHHCC-CCCCEEEECCCCCHHHHHHHHCCCCCEEE Q ss_conf 006857999999999964983899730368887-4428999998876213-68832410256999999987415760697 Q gi|254780485|r 86 KLINVDQVLKEAKNAKENGATRYCMGAAWREPK-ERDLSIIVDMIKGVKS-LGLETCMTLGMLSFEQAQILSKAGLDYYN 163 (328) Q Consensus 86 ~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~-~~~~~~~~e~i~~i~~-~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~ 163 (328) T Consensus 113 DlI~v~d~~~ra~el~~lGvd~I~vH~G~D~Q~~g~~---p~~~l~~v~~~~~~~vAV-AGGi~~~t~~~~v~~GAdIvI 188 (429) T PRK07028 113 DLINVPDPVKRAVELEELGVDIINVHVGIDQQMLGKD---PLELLKKVSEEVSIPIAA-AGGLDAETAVKAVEAGADIVI 188 (429) T ss_pred EECCCCCHHHHHHHHHHCCCCEEEEEEEECHHHCCCC---HHHHHHHHHHHCCCEEEE-ECCCCHHHHHHHHHCCCCEEE T ss_conf 8558998899999999709988999762335531798---499999999755971899-668787769999975998999 Q ss_pred EECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHH-HHHH------CCCCCCEEECCCE Q ss_conf 51343777732058888989999999999987985577078668989999999999-9974------0888860205411 Q gi|254780485|r 164 HNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLL-TLAN------LSTPPESIPINLL 236 (328) Q Consensus 164 ~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~-~lr~------l~~~~~~v~~~~~ 236 (328) T Consensus 189 VGga--------I~~a~dp~~aAr~ir~ai~~~~~~~~~----~~~~~~~~~~~~~~~vs~~n~sdamhr~~~~~~~~p~ 256 (429) T PRK07028 189 VGGN--------IYKSADVTGAARDIREALDSPPVPTDK----FKKSLDEEIRELFKEVSTSNISDAMHRKGAMKGLKPL 256 (429) T ss_pred ECCC--------CCCCCCHHHHHHHHHHHHHCCCCCCCC----CCCCHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCEEC T ss_conf 8940--------057999799999999997376767652----0022389999999851887611566640455785442 Q ss_pred EECCCCCCCCCC---CCCHHHHHHHHHHHHHHCCCCCCEEEE-HHH-H-HCHHHHHHHHHHCCCEEEECCEEECCCCCCH Q ss_conf 204874124456---879899999999999968687214231-156-5-1656899999809988997786651588898 Q gi|254780485|r 237 IPIPGSKFEENK---KVDPIEHVRIISVARILMPKSRLRLAA-GRA-M-MSDELQALCFFSGANSIFVGDTLLTAKNPSY 310 (328) Q Consensus 237 ~p~~gt~l~~~~---~~~~~e~lr~iAi~RL~lP~~~i~i~~-~~~-~-~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~~ 310 (328) T Consensus 257 --~~~~k~~G~avTV~t~~gD~~~~~~AiD~A~PGDViVId~~G~d~A~WGeLmt~aA~~rGIaG~VIDGa--------- 325 (429) T PRK07028 257 --VRGLKMVGPAVTVQTFAGDWAKPVEAIDVAEPGDVLVIDNCSSDIAPWGGLATLSCLNKGIAGVVIDGA--------- 325 (429) T ss_pred --CCCCEEEEEEEEEEECCCCCCCHHHHHHCCCCCCEEEEECCCCCCEEEHHHHHHHHHHCCCEEEEEECC--------- T ss_conf --468634666799995688740567786247999789996799975130899999999879819997015--------- Q ss_pred HHHHHHHHHCCCCCCCC Q ss_conf 99999999829853247 Q gi|254780485|r 311 NKDTILFNRLGLIPDLS 327 (328) Q Consensus 311 ~~~~~~i~~~G~~P~~~ 327 (328) T Consensus 326 vRDv~eIr~lgf-PVFa 341 (429) T PRK07028 326 VRDVDEIRKLGF-PVFA 341 (429) T ss_pred CCCHHHHHHCCC-CEEE T ss_conf 669999984599-8698 |
|
| >COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.46 Score=26.81 Aligned_cols=220 Identities=17% Similarity=0.174 Sum_probs=120.7 Q ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEC---CCCCHHHHHHHHCCCCCEE Q ss_conf 0068579999999999649838997303688874428999998876213688324102---5699999998741576069 Q gi|254780485|r 86 KLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTL---GMLSFEQAQILSKAGLDYY 162 (328) Q Consensus 86 ~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~---g~~~~~~~~~Lk~aG~~~~ 162 (328) T Consensus 19 ~~~s~e~Ki~Ia~~Ld~lGv~~IE~g--~p~~s~~~~~~~~~i~~---~~~~~~~~~~~~~~~~~~~~~ea~~~a~~~~i 93 (409) T COG0119 19 VSFSVEEKIRIAKALDDLGVDYIEAG--FPVASPGDFEFVRAIAE---KAGLFICALIAALARAIKRDIEALLEAGVDRI 93 (409) T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEE--CCCCCHHHHHHHHHHHH---HCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEE T ss_conf 95788999999999997699879972--78688546999999987---46863220223317867755999975799989 Q ss_pred EEECCCCHHHHHCCCCCCCHHH----HHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEE Q ss_conf 7513437777320588889899----999999999879855770786689899999999999974088886020541120 Q gi|254780485|r 163 NHNIDTSERFYPHVTTTHTFED----RLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIP 238 (328) Q Consensus 163 ~~~let~~~~~~~~~~~~~~~~----~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p 238 (328) T Consensus 94 ~if~~tSd~h~~~~~~-~t~~e~l~~~~~~v~~a~~~g~~~~~~~Ed~~rt~~e~l~~~~~~~~~~ga~--------~i~ 164 (409) T COG0119 94 HIFIATSDLHLRYKLK-KTREEVLERAVDAVEYARDHGLEVRFSAEDATRTDPEFLAEVVKAAIEAGAD--------RIN 164 (409) T ss_pred EEEECCCHHHHHHHHC-CCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCC--------EEE T ss_conf 9997478899998848-9999999999999999997397589875313367999999999999971994--------999 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCC-CCCEEEEHHHHHCH--HHHHHHHHHCCC---EEEECCEEECCCCCCHHH Q ss_conf 487412445687989999999999996868-72142311565165--689999980998---899778665158889899 Q gi|254780485|r 239 IPGSKFEENKKVDPIEHVRIISVARILMPK-SRLRLAAGRAMMSD--ELQALCFFSGAN---SIFVGDTLLTAKNPSYNK 312 (328) Q Consensus 239 ~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~-~~i~i~~~~~~~~~--~~~~~~L~~GaN---~~~~g~~~~t~~g~~~~~ 312 (328) T Consensus 165 l~DT----vG~~~P~~~~~~i~~l~~~v~~~~~i~~H~-HND~G~AvANslaAv~aGa~~v~~TvnGiG-ERaGna~l~~ 238 (409) T COG0119 165 LPDT----VGVATPNEVADIIEALKANVPNKVILSVHC-HNDLGMAVANSLAAVEAGADQVEGTVNGIG-ERAGNAALEE 238 (409) T ss_pred ECCC----CCCCCHHHHHHHHHHHHHHCCCCCEEEEEE-CCCCCHHHHHHHHHHHCCCCEEEEECCCCE-ECCCCCCHHH T ss_conf 7787----686587999999999998378887388983-698565999999999848838999645614-3366654799 Q ss_pred HHH---HHHHCCCCCC Q ss_conf 999---9998298532 Q gi|254780485|r 313 DTI---LFNRLGLIPD 325 (328) Q Consensus 313 ~~~---~i~~~G~~P~ 325 (328) T Consensus 239 v~~~l~~~~~~~~~~~ 254 (409) T COG0119 239 VVLALALRKDYGVDTG 254 (409) T ss_pred HHHHHHHHHHCCCCCC T ss_conf 9999999765187568 |
|
| >KOG3111 consensus | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.46 Score=26.77 Aligned_cols=195 Identities=15% Similarity=0.179 Sum_probs=117.2 Q ss_pred HHHHHHHHHHHCCCEEEEE-ECCCCCCCCCCH-HHHHHHHHHHCCCC--CCEEEECCCCCHHHHHHHHCCCCCEEEEECC Q ss_conf 9999999999649838997-303688874428-99999887621368--8324102569999999874157606975134 Q gi|254780485|r 92 QVLKEAKNAKENGATRYCM-GAAWREPKERDL-SIIVDMIKGVKSLG--LETCMTLGMLSFEQAQILSKAGLDYYNHNID 167 (328) Q Consensus 92 ei~~~a~~~~~~G~~~~~l-~~~~~~~~~~~~-~~~~e~i~~i~~~~--~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~le 167 (328) T Consensus 18 nL~~E~~~~~~~GadwlHlDVMDg~FVpNiT~G~pvV~slr~~~~~~~ffD~HmMV-~~Peq~v~~~a~agas~~tfH~E 96 (224) T KOG3111 18 NLAAECKKMLDAGADWLHLDVMDGHFVPNITFGPPVVESLRKHTGADPFFDVHMMV-ENPEQWVDQMAKAGASLFTFHYE 96 (224) T ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEE-CCHHHHHHHHHHCCCCEEEEEEE T ss_conf 89999999997498758786014710477433618899998525888523678764-69888767998647756999864 Q ss_pred CCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCC Q ss_conf 37777320588889899999999999879855770786689899999999999974088886020541120487412445 Q gi|254780485|r 168 TSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEEN 247 (328) Q Consensus 168 t~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~ 247 (328) T Consensus 97 ~~-------------q~~~~lv~~ir~~gmk~G~--alkPgT~Ve~~~~~~~-------~~D~vLvMtVePGFG----GQ 150 (224) T KOG3111 97 AT-------------QKPAELVEKIREKGMKVGL--ALKPGTPVEDLEPLAE-------HVDMVLVMTVEPGFG----GQ 150 (224) T ss_pred EC-------------CCHHHHHHHHHHCCCEEEE--EECCCCCHHHHHHHHH-------HCCEEEEEEECCCCC----HH T ss_conf 32-------------5789999999974975668--7489995899997641-------025799998548975----04 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCCCCHHHHHHHHHHC Q ss_conf 6879899999999999968687214231156516568999998099889977866515888989999999982 Q gi|254780485|r 248 KKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYNKDTILFNRL 320 (328) Q Consensus 248 ~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~~~~~~~~i~~~ 320 (328) T Consensus 151 k--Fme~mm~KV~~lR~kyp~l~ieVDGG---v~p~ti~~~a~AGAN~iVaGsavf~a~--d~~~vi~~lr~~ 216 (224) T KOG3111 151 K--FMEDMMPKVEWLREKYPNLDIEVDGG---VGPSTIDKAAEAGANMIVAGSAVFGAA--DPSDVISLLRNS 216 (224) T ss_pred H--HHHHHHHHHHHHHHHCCCCEEEECCC---CCCCHHHHHHHCCCCEEEECCEEECCC--CHHHHHHHHHHH T ss_conf 5--78999899999998689843885488---682137799875888798633345279--989999999999 |
|
| >PRK04281 consensus | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.52 Score=26.44 Aligned_cols=201 Identities=12% Similarity=0.111 Sum_probs=114.2 Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHC-CCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCC-- Q ss_conf 999999999964983899730368887442899999887621-36883241025699999998741576069751343-- Q gi|254780485|r 92 QVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVK-SLGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDT-- 168 (328) Q Consensus 92 ei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~-~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let-- 168 (328) T Consensus 31 dP~~~ak~~~~~GadelhivDld~a~~~--~~~~~~~I~~i~~~~~vpi~vGGGIrs~e~~~~ll~~GadkViigs~a~~ 108 (254) T PRK04281 31 DPVEAAKRYNGEGADELTFLDITASSDN--RDTILHIIEEVAGQVFIPLTVGGGVRTVADIRRLLNAGADKVSINTAAVT 108 (254) T ss_pred CHHHHHHHHHHCCCCEEEEEECCCCCCC--CHHHHHHHHHHHHHCCCCEEEECCEEECHHHHHHHHCCCCEEEECHHHHH T ss_conf 9999999999869999999968898777--53089999999850796289977754518899999769988997776764 Q ss_pred CHHHHHCCCCCCCHHHHHHHHHHHHHCCCC-C-------------CCEEEECCC---CCHHHHHHHHHHHHHCCCCCCEE Q ss_conf 777732058888989999999999987985-5-------------770786689---89999999999997408888602 Q gi|254780485|r 169 SERFYPHVTTTHTFEDRLQTLENVRKSGIK-V-------------CCGGILGLG---EMIDDRIDMLLTLANLSTPPESI 231 (328) Q Consensus 169 ~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~-~-------------~sg~l~G~g---Et~eeri~~l~~lr~l~~~~~~v 231 (328) T Consensus 109 np~~l~~~---------------~~~fG~q~Iv~siD~k~~~~~~~~~~i~~~g~~~~t~~~~~~~~~~~~~~g~--gei 171 (254) T PRK04281 109 RPDLIDEA---------------AGFFGSQAIVAAVDAKAVNPENTRWEIFTHGGRNPTGLDAVEWAVEMQKRGA--GEI 171 (254) T ss_pred CCHHHHHH---------------HHHCCCEEEEEEEEEEEECCCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCC--CEE T ss_conf 92676767---------------8755982179999888502468845999758864775449999999875299--899 Q ss_pred ECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHC-CCEEEECCEEECCCCCCH Q ss_conf 0541120487412445687989999999999996868721423115651656899999809-988997786651588898 Q gi|254780485|r 232 PINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSG-ANSIFVGDTLLTAKNPSY 310 (328) Q Consensus 232 ~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~G-aN~~~~g~~~~t~~g~~~ 310 (328) T Consensus 172 l~-tdI~rDGt-~~----G~d~~l~~~i~--~~--~~iPvIasGGv~~-~~di~~-~~~~~~~~~v~~g~-~~~~~~~sl 238 (254) T PRK04281 172 LL-TGMDRDGT-KQ----GFNLPLTRAVA--EA--VDIPVIASGGVGN-VRHLIE-GITEGKADAVLAAG-IFHFGEIAI 238 (254) T ss_pred EE-EEECCCCC-CC----CCCHHHHHHHH--HH--CCCCEEEECCCCC-HHHHHH-HHHHCCCCEEEEHH-HHHCCCCCH T ss_conf 99-88857887-68----76869999998--61--6998999789899-999999-99808988897643-777799899 Q ss_pred HHHHHHHHHCCCCC Q ss_conf 99999999829853 Q gi|254780485|r 311 NKDTILFNRLGLIP 324 (328) Q Consensus 311 ~~~~~~i~~~G~~P 324 (328) T Consensus 239 ~eak~~l~~~~i~v 252 (254) T PRK04281 239 REAKRAMREAGIEV 252 (254) T ss_pred HHHHHHHHHCCCCC T ss_conf 99999999867970 |
|
| >PRK02747 consensus | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.56 Score=26.23 Aligned_cols=203 Identities=13% Similarity=0.127 Sum_probs=114.0 Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHC-CCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCC-- Q ss_conf 999999999964983899730368887442899999887621-36883241025699999998741576069751343-- Q gi|254780485|r 92 QVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVK-SLGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDT-- 168 (328) Q Consensus 92 ei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~-~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let-- 168 (328) T Consensus 31 dP~~~ak~~~~~Gadelh~vDl~~a~~~--~~~~~~lI~~i~~~~~ipi~vGGGIrs~e~~~~ll~~GadkViigs~a~~ 108 (257) T PRK02747 31 DPVEAARAYDAAGADELCFLDITASHEN--RGTMLDVVARTAEQCFMPLTVGGGVRTVDDIRKLLLAGADKVSINSAAVA 108 (257) T ss_pred CHHHHHHHHHHCCCCEEEEEECCCCCCC--CHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHHH T ss_conf 9999999999869998999947677567--55289999999986699889848820738878998769968983444654 Q ss_pred CHHHHHCCCCCCCHHHHHHHHHHHHHCCCC-CCCE---------------EEECC---CCCHHHHHHHHHHHHHCCCCCC Q ss_conf 777732058888989999999999987985-5770---------------78668---9899999999999974088886 Q gi|254780485|r 169 SERFYPHVTTTHTFEDRLQTLENVRKSGIK-VCCG---------------GILGL---GEMIDDRIDMLLTLANLSTPPE 229 (328) Q Consensus 169 ~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~-~~sg---------------~l~G~---gEt~eeri~~l~~lr~l~~~~~ 229 (328) T Consensus 109 np~l~~~~---------------~~~fG~q~Iv~siD~k~~~~~~~~~~~~i~~~~~~~~t~~~~~~~~~~~~~~G~--g 171 (257) T PRK02747 109 RPEFVAEA---------------ADKFGSQCIVVAIDAKRVSPAGENDRWEIFTHGGRKPTGIDAVEFAQKVVSLGA--G 171 (257) T ss_pred CCHHHHHH---------------HHHCCCEEEEEEEEEEECCCCCCCCCEEEEECCCCEECCCHHHHHHHHHHHCCC--C T ss_conf 83477778---------------875596579999987751576778738999889846343039999999997099--8 Q ss_pred EEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCCCC Q ss_conf 02054112048741244568798999999999999686872142311565165689999980998899778665158889 Q gi|254780485|r 230 SIPINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPS 309 (328) Q Consensus 230 ~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~ 309 (328) T Consensus 172 eil~-tdI~rDG~-~~---G~d-l~l~~~i~~---~~~-~pvIasGGv-~~~~di~~~~~~~~~~av~~g~~-~~~~~~~ 239 (257) T PRK02747 172 EILL-TSMDRDGT-KA---GFD-LPLTRAIAD---AVR-VPVIASGGV-GTLDHLVEGVRDGHATAVLAASI-FHFGTYT 239 (257) T ss_pred EEEE-EEECCCCC-CC---CCC-HHHHHHHHH---CCC-CCEEEECCC-CCHHHHHHHHHHCCCCEEEEHHH-HHCCCCC T ss_conf 8999-98835573-26---788-699999986---079-989997799-99999999998389849988326-7769989 Q ss_pred HHHHHHHHHHCCCCCC Q ss_conf 8999999998298532 Q gi|254780485|r 310 YNKDTILFNRLGLIPD 325 (328) Q Consensus 310 ~~~~~~~i~~~G~~P~ 325 (328) T Consensus 240 l~~ak~~L~~~~i~vR 255 (257) T PRK02747 240 IGEAKAHMAAAGIPMR 255 (257) T ss_pred HHHHHHHHHHCCCCCC T ss_conf 9999999998789654 |
|
| >TIGR02660 nifV_homocitr homocitrate synthase; InterPro: IPR013477 Most NifV-type homocitrate synthases are encoded within operons for nitrogen fixation | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.57 Score=26.16 Aligned_cols=208 Identities=16% Similarity=0.240 Sum_probs=122.4 Q ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCC-CCHHHHHHHHCCCCCEE Q ss_conf 10006857999999999964983899730368887442899999887621368832410256-99999998741576069 Q gi|254780485|r 84 ASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTLGM-LSFEQAQILSKAGLDYY 162 (328) Q Consensus 84 ~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g~-~~~~~~~~Lk~aG~~~~ 162 (328) T Consensus 16 pGVAF~~~EK~aIA~aLd~aGV~ElEvG--iPAMG~~E----~~~iraI~~~~l~a~l~~WcR~~~~Di~aa~~~G~~~V 89 (369) T TIGR02660 16 PGVAFTAAEKLAIARALDEAGVDELEVG--IPAMGEEE----RAVIRAIVALGLKARLMAWCRARDADIEAAARCGVDAV 89 (369) T ss_pred CHHCCCHHHHHHHHHHHHHHCCCEEEEC--CCCCCHHH----HHHHHHHHHCCCCCEEEHHHHCCHHHHHHHHHHHHHEE T ss_conf 2003487899999999998096247615--77687889----99999999628993031100104799999987205203 Q ss_pred EEECCCCHH-HHHCCCCC-CCH-HHHH-HHHHHHHHCCCCCCCEEEECCCC-CHHH---HHHHHHHHHHCCCCCCEEECC Q ss_conf 751343777-73205888-898-9999-99999998798557707866898-9999---999999997408888602054 Q gi|254780485|r 163 NHNIDTSER-FYPHVTTT-HTF-EDRL-QTLENVRKSGIKVCCGGILGLGE-MIDD---RIDMLLTLANLSTPPESIPIN 234 (328) Q Consensus 163 ~~~let~~~-~~~~~~~~-~~~-~~~l-~~~~~a~~~G~~~~sg~l~G~gE-t~ee---ri~~l~~lr~l~~~~~~v~~~ 234 (328) T Consensus 90 ~iS~PvSd~~~~~KL~~~Cr~w~~~~~~~~V~~A~~~Gl~Vs----VG~EDASRAd~~FL~~~~~~A~~aGA-------~ 158 (369) T TIGR02660 90 DISIPVSDLQIEAKLRKDCRAWVLERLARLVSFARDRGLEVS----VGGEDASRADPEFLVELAEVAQEAGA-------D 158 (369) T ss_pred ECCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEE----ECCCCCCCCCHHHHHHHHHHHHHCCC-------C T ss_conf 100277799999974885789999999999999876442031----05625545888899999999987063-------1 Q ss_pred CEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHH-CHHHHH------HHHHHCCC---EEE--ECCEE Q ss_conf 1120487412445687989999999999996868721423115651-656899------99980998---899--77866 Q gi|254780485|r 235 LLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMM-SDELQA------LCFFSGAN---SIF--VGDTL 302 (328) Q Consensus 235 ~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~-~~~~~~------~~L~~GaN---~~~--~g~~~ 302 (328) T Consensus 159 RfRf-ADT----vG~LDPF~~~~~~~~Lr~~~~l-------~lE~HaHnDlGmATANtLAAv~AGA~~vntTV~GLGE-- 224 (369) T TIGR02660 159 RFRF-ADT----VGILDPFSTYELVRALRQAVDL-------PLEFHAHNDLGMATANTLAAVRAGATHVNTTVNGLGE-- 224 (369) T ss_pred CCCH-HHH----CCCCCHHHHHHHHHHHHHCCCC-------CEEEEEECCHHHHHHHHHHHHHHCCEEEEEEECCHHH-- T ss_conf 1014-312----0225727899999998721799-------6258504763479999999886085776335433011-- Q ss_pred ECCCCCCHHHHHHHHHH-CCCC Q ss_conf 51588898999999998-2985 Q gi|254780485|r 303 LTAKNPSYNKDTILFNR-LGLI 323 (328) Q Consensus 303 ~t~~g~~~~~~~~~i~~-~G~~ 323 (328) T Consensus 225 -RAGNAaLEEV~~AL~~~~G~d 245 (369) T TIGR02660 225 -RAGNAALEEVAMALKRLLGRD 245 (369) T ss_pred -HHCCCHHHHHHHHHHHHCCCC T ss_conf -001222489999999857988 |
They are homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by these enzymes becomes a part of the iron-molybdenum cofactor of nitrogenase.; GO: 0004410 homocitrate synthase activity, 0051188 cofactor biosynthetic process. |
| >PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.6 Score=26.03 Aligned_cols=178 Identities=19% Similarity=0.224 Sum_probs=112.1 Q ss_pred CCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCC-CEEEECC-CCCHHHHHHHHCCCCCEEEE Q ss_conf 068579999999999649838997303688874428999998876213688-3241025-69999999874157606975 Q gi|254780485|r 87 LINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGL-ETCMTLG-MLSFEQAQILSKAGLDYYNH 164 (328) Q Consensus 87 ~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~-~i~~~~g-~~~~~~~~~Lk~aG~~~~~~ 164 (328) T Consensus 18 ~~~~~~a~~~~~al~~~Gi~~iEVTl--~tp~------a~~~I~~l~~~~~~~~~iGAGTVlt~e~~~~ai~aGA~FiV- 88 (206) T PRK09140 18 GITPDEALAHVGALIEAGFRAIEIPL--NSPD------PFDSIAALVKALGDDALIGAGTVLSPEQVDRLADAGGRLIV- 88 (206) T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEC--CCCC------HHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHCCCCEEE- T ss_conf 89999999999999986998899917--9976------99999999996798659986204679999999985999999- Q ss_pred ECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCC Q ss_conf 13437777320588889899999999999879855770786689899999999999974088886020541120487412 Q gi|254780485|r 165 NIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKF 244 (328) Q Consensus 165 ~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l 244 (328) T Consensus 89 ----SP--------~~~----~~vi~~a~~~~i~~iPG~~-----TPsEi~~A~----~~Ga--~~vK---lFPA----- 133 (206) T PRK09140 89 ----TP--------NID----PEVIRRAVAYGMTVMPGVA-----TPTEAFAAL----RAGA--DALK---LFPA----- 133 (206) T ss_pred ----CC--------CCC----HHHHHHHHHCCCCCCCCCC-----CHHHHHHHH----HCCC--CEEE---ECCH----- T ss_conf ----99--------998----9999999982996527859-----999999999----8598--7156---5751----- Q ss_pred CCCCCCCHHHHHHHHHHHHHHCC-CCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCCCCHHHHHHHHHH Q ss_conf 44568798999999999999686-8721423115651656899999809988997786651588898999999998 Q gi|254780485|r 245 EENKKVDPIEHVRIISVARILMP-KSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYNKDTILFNR 319 (328) Q Consensus 245 ~~~~~~~~~e~lr~iAi~RL~lP-~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~~~~~~~~i~~ 319 (328) T Consensus 134 ---~~~Gp-~~ikal---~~p~P~~~~~-~ptGG--V~~~N~~~~l~aGa~avG~Gs~L-~~~~~~~~~i~~~a~~ 198 (206) T PRK09140 134 ---SQLGP-AGIKAL---RAVLPPDVPV-FAVGG--VTPENLAPYLAAGAAGFGLGSAL-YRPGQSAEEVAERARA 198 (206) T ss_pred ---HCCCH-HHHHHH---HCCCCCCCEE-EECCC--CCHHHHHHHHHCCCCEEEECHHC-CCCCCCHHHHHHHHHH T ss_conf ---10599-999998---6438999989-95379--88888999998699199960651-5999999999999999 |
|
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=93.10 E-value=0.73 Score=25.46 Aligned_cols=203 Identities=17% Similarity=0.151 Sum_probs=103.7 Q ss_pred HHHHHHHHHHHHCCCEEEEEECCC--CCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCC Q ss_conf 799999999996498389973036--888744289999988762136883241025699999998741576069751343 Q gi|254780485|r 91 DQVLKEAKNAKENGATRYCMGAAW--REPKERDLSIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDT 168 (328) Q Consensus 91 Eei~~~a~~~~~~G~~~~~l~~~~--~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let 168 (328) T Consensus 31 ~dP~~~a~~~~~~Ga~~lhivDLd~a~~g~~~n~~~I~~i~~---~~~~pi~vGGGIrs~~~i~~~l~~Ga~kvvigs~~ 107 (240) T PRK13585 31 GDPVEVAKRWVDAGAKTLHLVDLDGAFEGSRKNADIIEKIVE---ATDVSIQLGGGIRSVEDAASLLDLGVDRVILGTAA 107 (240) T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHH---HCCCCEEEECCCCCHHHHHHHHHCCCCEEEECCCC T ss_conf 899999999998799979999897721189444999999997---37977899788587999999997699899939811 Q ss_pred --CHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCC---CCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCC Q ss_conf --7777320588889899999999999879855770786689---89999999999997408888602054112048741 Q gi|254780485|r 169 --SERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLG---EMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSK 243 (328) Q Consensus 169 --~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~g---Et~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~ 243 (328) T Consensus 108 ~~~~~~~~~i~~~~G~~~iv--------vsiD~k~~~v~~~gw~~~~~~~~~e~~~~~~~~g~--~eii~-tdI~~dGt- 175 (240) T PRK13585 108 IENPELVRELSDEFGSERVM--------VSLDAKDGEVVIEGWTESTGKDPVEWAQRFEELGA--GSILF-TNVDVEGL- 175 (240) T ss_pred HHCCHHHHHHHHHHCCCEEE--------EEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCC--CEEEE-EEECCHHH- T ss_conf 31842889999873972179--------99993065023247656788635577788886387--35898-64233223- Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCCCCHHHHHHHHHH Q ss_conf 2445687989999999999996868721423115651656899999809988997786651588898999999998 Q gi|254780485|r 244 FEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYNKDTILFNR 319 (328) Q Consensus 244 l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~~~~~~~~i~~ 319 (328) T Consensus 176 ~----~G~d~~~~~~i~~--~--~~~pviasGGv-~s~~di~~l-~~~g~~gvivG~Al-~~g~i~l~e~~~~~~~ 240 (240) T PRK13585 176 L----QGVNPEPVRELVD--S--VDIPVIASGGV-TSLDDVKAL-KEAGAAGVVVGSAL-YKGKFTLEEALEAAED 240 (240) T ss_pred H----CCCCHHHHHHHHH--H--CCCCEEEECCC-CCHHHHHHH-HHCCCCEEEEEHHH-HCCCCCHHHHHHHHHC T ss_conf 2----5789899999998--6--89999998899-999999999-97899789987687-6799789999999649 |
|
| >PRK05581 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.74 Score=25.41 Aligned_cols=197 Identities=19% Similarity=0.211 Sum_probs=106.4 Q ss_pred CHHHHHHHHHHHHHCCCEEEEE-ECCCCCCCCC-CHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCCEEEEEC Q ss_conf 8579999999999649838997-3036888744-2899999887621368832410256999999987415760697513 Q gi|254780485|r 89 NVDQVLKEAKNAKENGATRYCM-GAAWREPKER-DLSIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNI 166 (328) Q Consensus 89 ~~Eei~~~a~~~~~~G~~~~~l-~~~~~~~~~~-~~~~~~e~i~~i~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~l 166 (328) T Consensus 14 d~~~l~~~i~~l~~~g~~~lHiDImDG~FVpn~t~g~~~v~~i~~~t~~~~DvHLMv~~-P~~~i~~~~~~g~d~I~~H~ 92 (220) T PRK05581 14 DFARLGEEVKAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVTKLPLDVHLMVEN-PDRYVPDFAKAGADIITFHV 92 (220) T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEEC-HHHHHHHHHHCCCCEEEECC T ss_conf 99999999999997699989995757844775563999999998418996478999718-88879999973998899816 Q ss_pred CCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCC Q ss_conf 43777732058888989999999999987985577078668989999999999997408888602054112048741244 Q gi|254780485|r 167 DTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEE 246 (328) Q Consensus 167 et~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~ 246 (328) T Consensus 93 Ea~~~-------------~~~~i~~ik~~g~k~--Glalnp-~T~~~~l~~~l--~~iD----~VlvMt--V~PGf--~G 146 (220) T PRK05581 93 EASEH-------------IHRLLQLIKEAGIKA--GLVLNP-ATPLEYLEYVL--PLLD----LVLLMS--VNPGF--GG 146 (220) T ss_pred CCCCC-------------HHHHHHHHHHCCCCE--EEEECC-CCCHHHHHHHH--HHHC----EEEEEE--ECCCC--CC T ss_conf 75027-------------999999999749970--467669-99989999998--7415----258998--65887--87 Q ss_pred CCCCCHHHHHHHHHHHHHHC----CCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCCCCHHHHHHHHHH Q ss_conf 56879899999999999968----68721423115651656899999809988997786651588898999999998 Q gi|254780485|r 247 NKKVDPIEHVRIISVARILM----PKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYNKDTILFNR 319 (328) Q Consensus 247 ~~~~~~~e~lr~iAi~RL~l----P~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~~~~~~~~i~~ 319 (328) T Consensus 147 Q~f--~~~~l~ki~~l~~~~~~~~~~~~I~VDGG---In~~~i~~l~~~Gad~~V~GS~iF~~~--d~~~~i~~lk~ 216 (220) T PRK05581 147 QKF--IPEVLEKIREVRKLIDERGLDILIEVDGG---VNAENIKECAEAGADVFVAGSAVFGAP--DYKEAIDELRA 216 (220) T ss_pred CCC--CHHHHHHHHHHHHHHHHCCCCEEEEEECC---CCHHHHHHHHHCCCCEEEECHHHHCCC--CHHHHHHHHHH T ss_conf 645--56699999999999984599755999789---898999999977999999794885799--99999999999 |
|
| >PRK01659 consensus | Back alignment and domain information |
|---|
Probab=92.62 E-value=0.85 Score=25.02 Aligned_cols=201 Identities=15% Similarity=0.135 Sum_probs=114.2 Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHH-CCCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCC-- Q ss_conf 99999999996498389973036888744289999988762-136883241025699999998741576069751343-- Q gi|254780485|r 92 QVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGV-KSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDT-- 168 (328) Q Consensus 92 ei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i-~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let-- 168 (328) T Consensus 31 DP~~~ak~~~~~Gad~ihivDld~a~~g~--~~n~~~I~~i~~~~~ipi~vGGGIrs~e~~~~~l~~GadkViigs~a~~ 108 (252) T PRK01659 31 DPVEIAAAYNEAGADELVFLDITATHEGR--KTMVDVVEKVAAKVFIPLTVGGGISSVKDMKRLLRAGADKVSINSAAVL 108 (252) T ss_pred CHHHHHHHHHHCCCCEEEEEECCCCCCCC--HHHHHHHHHHHHHCCCCEEEECCEECHHHHHHHHHCCCCEEEECHHHHH T ss_conf 99999999998799999999467665688--6489999999975697479963320068888987448855983177752 Q ss_pred CHHHHHCCCCCCCHHHHHHHHHHHHHCCCC-C------------CCEEEECCC---CCHHHHHHHHHHHHHCCCCCCEEE Q ss_conf 777732058888989999999999987985-5------------770786689---899999999999974088886020 Q gi|254780485|r 169 SERFYPHVTTTHTFEDRLQTLENVRKSGIK-V------------CCGGILGLG---EMIDDRIDMLLTLANLSTPPESIP 232 (328) Q Consensus 169 ~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~-~------------~sg~l~G~g---Et~eeri~~l~~lr~l~~~~~~v~ 232 (328) T Consensus 109 n~~~i~~~---------------~~~~G~q~IvvsiD~k~~~~~~~~~i~~~g~~~~~~~~~~~~i~~~~~~g~--geil 171 (252) T PRK01659 109 RPELITEG---------------ADHFGSQCIVVAIDAKYDAEAGKWNVYTHGGRVDTGLDAIAWAKEAVRLGA--GEIL 171 (252) T ss_pred CHHHHHHH---------------HHHCCCEEEEEEEEEEEECCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCC--CEEE T ss_conf 91532146---------------764686326999998970568868999689957677779999999997699--7799 Q ss_pred CCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCCCCHHH Q ss_conf 54112048741244568798999999999999686872142311565165689999980998899778665158889899 Q gi|254780485|r 233 INLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYNK 312 (328) Q Consensus 233 ~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~~~~ 312 (328) T Consensus 172 ~-tdI~rDG~-~~---G~d-l~l~~~i~~---~~-~~PiIasGGi-~~~~di~~l~~~~~v~gv~~g~~~-~~~~~sl~e 239 (252) T PRK01659 172 L-TSMDADGT-KN---GFD-LRLTKAISE---AV-SVPVIASGGA-GNADHMVEVFQKTTADAALAASIF-HYGETSIKE 239 (252) T ss_pred E-EEECCCCC-CC---CCC-HHHHHHHHH---HC-CCCEEEEECC-CCHHHHHHHHHHCCCCEEEEHHHH-HCCCCCHHH T ss_conf 9-98814585-47---689-899999998---68-9999999179-999999999974898265575477-779999999 Q ss_pred HHHHHHHCCCC Q ss_conf 99999982985 Q gi|254780485|r 313 DTILFNRLGLI 323 (328) Q Consensus 313 ~~~~i~~~G~~ 323 (328) T Consensus 240 ~k~~L~~~~~~ 250 (252) T PRK01659 240 VKAKLREAGVN 250 (252) T ss_pred HHHHHHHCCCC T ss_conf 99999987498 |
|
| >PRK02621 consensus | Back alignment and domain information |
|---|
Probab=91.64 E-value=1.1 Score=24.27 Aligned_cols=201 Identities=13% Similarity=0.090 Sum_probs=111.1 Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHC-CCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCC-- Q ss_conf 999999999964983899730368887442899999887621-36883241025699999998741576069751343-- Q gi|254780485|r 92 QVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVK-SLGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDT-- 168 (328) Q Consensus 92 ei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~-~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let-- 168 (328) T Consensus 31 dP~~~ak~~~~~gad~lhivDld~a~~~~--~~~~~~I~~i~~~~~ipi~vGGGIrs~e~~~~ll~~GadkVii~s~a~~ 108 (254) T PRK02621 31 DPVELACRYSQAGADELVFLDITATHEGR--ATLIDVVYRTAEQVFIPLTVGGGISSLEGIKELLRAGADKVSLNSAAVR 108 (254) T ss_pred CHHHHHHHHHHCCCCEEEEEECCCCCCCC--HHHHHHHHHHHHHCCCCEEEECCEEEHHHHHHHHHCCCCEEEECCHHHH T ss_conf 99999999998599999998266765675--4289999999986798589963353579999999749998999886764 Q ss_pred CHHHHHCCCCCCCHHHHHHHHHHHHHCCCC-CCCE-------------EEEC---CCCCHHHHHHHHHHHHHCCCCCCEE Q ss_conf 777732058888989999999999987985-5770-------------7866---8989999999999997408888602 Q gi|254780485|r 169 SERFYPHVTTTHTFEDRLQTLENVRKSGIK-VCCG-------------GILG---LGEMIDDRIDMLLTLANLSTPPESI 231 (328) Q Consensus 169 ~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~-~~sg-------------~l~G---~gEt~eeri~~l~~lr~l~~~~~~v 231 (328) T Consensus 109 np~~~~~~---------------~~~fG~q~Iv~siD~k~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~g~--gei 171 (254) T PRK02621 109 DPDLVRQA---------------SDRFGSQCIVVAIDARRRKPDNPGWDVYVRGGRENTGLDAVEWAEEVAERGA--GEI 171 (254) T ss_pred CCCHHHHH---------------HHHCCCCCEEEEEEEECCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC--CEE T ss_conf 73544556---------------8756984339999955353478862899668845577679999988776288--969 Q ss_pred ECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCCCCHH Q ss_conf 05411204874124456879899999999999968687214231156516568999998099889977866515888989 Q gi|254780485|r 232 PINLLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYN 311 (328) Q Consensus 232 ~~~~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~~~ 311 (328) T Consensus 172 l~-tdI~~DGt-~----~G~d~~l~~~i~~--~-~-~iPvi~sGGi-~s~edi~~~l~~~~v~gvivG~al-~~~~~~l~ 239 (254) T PRK02621 172 LL-TSMDGDGT-Q----AGYDLELTRAIAE--A-V-EIPVIASGGA-GCCDHIAEALTEGKAEAALLASLL-HYGQLTIA 239 (254) T ss_pred EE-EEECCCCC-C----CCCCHHHHHHHHH--H-C-CCCEEEECCC-CCHHHHHHHHHHCCCEEEEEHHHH-HCCCCCHH T ss_conf 99-88804797-5----7688699999997--1-7-9979997799-999999999985898198775787-88999999 Q ss_pred HHHHHHHHCCCC Q ss_conf 999999982985 Q gi|254780485|r 312 KDTILFNRLGLI 323 (328) Q Consensus 312 ~~~~~i~~~G~~ 323 (328) T Consensus 240 e~K~~l~~~~i~ 251 (254) T PRK02621 240 EIKADLLARGLP 251 (254) T ss_pred HHHHHHHHCCCC T ss_conf 999999977799 |
|
| >cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE) | Back alignment and domain information |
|---|
Probab=91.54 E-value=1.1 Score=24.20 Aligned_cols=185 Identities=19% Similarity=0.225 Sum_probs=102.7 Q ss_pred CHHHHHHHHHHHHHCCCEEEEE-ECCCCC-CCCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCCEEEEEC Q ss_conf 8579999999999649838997-303688-87442899999887621368832410256999999987415760697513 Q gi|254780485|r 89 NVDQVLKEAKNAKENGATRYCM-GAAWRE-PKERDLSIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNI 166 (328) Q Consensus 89 ~~Eei~~~a~~~~~~G~~~~~l-~~~~~~-~~~~~~~~~~e~i~~i~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~l 166 (328) T Consensus 10 d~~~l~~~i~~~~~~g~d~lHiDimDG~Fvpn~t~g~~~v~~i~~~t~~~~DvHLMv~~-P~~~i~~~~~~g~d~I~~H~ 88 (211) T cd00429 10 DFANLGEELKRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHTDLPLDVHLMVEN-PERYIEAFAKAGADIITFHA 88 (211) T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECC-HHHHHHHHHHHCCCEEEECC T ss_conf 99999999999997699989995757972786675989999998757997058998718-87769999970998899864 Q ss_pred CCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCC Q ss_conf 43777732058888989999999999987985577078668989999999999997408888602054112048741244 Q gi|254780485|r 167 DTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEE 246 (328) Q Consensus 167 et~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~ 246 (328) T Consensus 89 E~~~-------------~~~~~i~~ik~~g~~~--Glal~p~-T~~~~l~~~l~--~~D----~vliM--tV~PGf--~G 142 (211) T cd00429 89 EATD-------------HLHRTIQLIKELGMKA--GVALNPG-TPVEVLEPYLD--EVD----LVLVM--SVNPGF--GG 142 (211) T ss_pred CCCC-------------CHHHHHHHHHHCCCCC--EEEECCC-CCHHHHHHHHH--HHC----EEEEE--EECCCC--CC T ss_conf 3220-------------8999999999739872--3575489-99899999997--515----22798--746887--88 Q ss_pred CCCCCHHHHHHHHHHHHHHCC----CCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECC Q ss_conf 568798999999999999686----87214231156516568999998099889977866515 Q gi|254780485|r 247 NKKVDPIEHVRIISVARILMP----KSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTA 305 (328) Q Consensus 247 ~~~~~~~e~lr~iAi~RL~lP----~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~ 305 (328) T Consensus 143 Q~--f~~~~~~ki~~l~~~~~~~~~~~~I~vDGG---I~~~~i~~l~~~Gad~~V~GS~iF~~ 200 (211) T cd00429 143 QK--FIPEVLEKIRKLRELIPENNLNLLIEVDGG---INLETIPLLAEAGADVLVAGSALFGS 200 (211) T ss_pred CC--CCHHHHHHHHHHHHHHHHCCCCEEEEEECC---CCHHHHHHHHHCCCCEEEECHHHHCC T ss_conf 75--456799999999999986499859999678---59899999998599999979377589 |
This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis. |
| >PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed | Back alignment and domain information |
|---|
Probab=91.42 E-value=1.2 Score=24.12 Aligned_cols=200 Identities=12% Similarity=0.121 Sum_probs=107.5 Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC--H----HHHHHHHHHHC-CCCCCEEEECCCCCHHHHHHHHCCCCC Q ss_conf 6857999999999964983899730368887442--8----99999887621-368832410256999999987415760 Q gi|254780485|r 88 INVDQVLKEAKNAKENGATRYCMGAAWREPKERD--L----SIIVDMIKGVK-SLGLETCMTLGMLSFEQAQILSKAGLD 160 (328) Q Consensus 88 ~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~--~----~~~~e~i~~i~-~~~~~i~~~~g~~~~~~~~~Lk~aG~~ 160 (328) T Consensus 129 ES~eQi~~~A~~vk~~G~~~l--RgGa~KPRTsPysFqGlG~eGL~~L~~a~~e~gl~vvTE--V~~~~~ve~~~~y-vD 203 (360) T PRK12595 129 ESYEQVAAVAQALKAKGLKLL--RGGAFKPRTSPYDFQGLGVEGLKILKQVADEYDLAVISE--IVNPNDVEVALDY-VD 203 (360) T ss_pred CCHHHHHHHHHHHHHCCCCEE--ECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE--ECCHHHHHHHHHH-CC T ss_conf 789999999999997597557--255568999997657684579999999999859972798--5788899999974-86 Q ss_pred EEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEE--CCCCCHHHHHHHHHHHHHCCCCCCEEECC--CE Q ss_conf 697513437777320588889899999999999879855770786--68989999999999997408888602054--11 Q gi|254780485|r 161 YYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGIL--GLGEMIDDRIDMLLTLANLSTPPESIPIN--LL 236 (328) Q Consensus 161 ~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~--G~gEt~eeri~~l~~lr~l~~~~~~v~~~--~~ 236 (328) T Consensus 204 ilqIGARn----------mqN----f~LLk~vg~~~kPV----LlKrg~~ati~ewl~AaEyi~~~Gn-~~vilceRGir 264 (360) T PRK12595 204 VIQIGARN----------MQN----FELLKAAGRVNKPV----LLKRGLSATIEEFIYAAEYIMSQGN-DQIILCERGIR 264 (360) T ss_pred EEEECCHH----------CCC----HHHHHHHHCCCCCE----EEECCCCCCHHHHHHHHHHHHHCCC-CCEEEEECCCC T ss_conf 89888410----------359----99999986139937----9607999999999999999986799-87899917756 Q ss_pred EECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC----CEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEE----CCCC- Q ss_conf 2048741244568798999999999999686872----142311565165689999980998899778665----1588- Q gi|254780485|r 237 IPIPGSKFEENKKVDPIEHVRIISVARILMPKSR----LRLAAGRAMMSDELQALCFFSGANSIFVGDTLL----TAKN- 307 (328) Q Consensus 237 ~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~----i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~----t~~g- 307 (328) T Consensus 265 T~e~~t------Rnt--ldl~avp~~k~-~thLPVivDPSH~~G~r~lv~~~a~aa~a~GaDGlmIEvHp~P~~AlSD~~ 335 (360) T PRK12595 265 TYEKAT------RNT--LDISAVPILKQ-ETHLPVMVDVTHSTGRRDLLLPTAKAALAIGADGVMAEVHPDPAVALSDSA 335 (360) T ss_pred CCCCCC------CCC--CCHHHHHHHHC-CCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCHHHCCCCCC T ss_conf 778766------889--88678899864-999998989965215575899999999974999799986688232158710 Q ss_pred --CCHHHHHHHHHHC Q ss_conf --8989999999982 Q gi|254780485|r 308 --PSYNKDTILFNRL 320 (328) Q Consensus 308 --~~~~~~~~~i~~~ 320 (328) T Consensus 336 Qql~~~~f~~l~~~l 350 (360) T PRK12595 336 QQMDIPEFDRFYDEL 350 (360) T ss_pred CCCCHHHHHHHHHHH T ss_conf 048999999999999 |
|
| >PRK08745 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=91.36 E-value=1.2 Score=24.08 Aligned_cols=195 Identities=13% Similarity=0.157 Sum_probs=104.4 Q ss_pred HHHHHHHHHHHHCCCEEEEE-ECCCCCCCCCCH-HHHHHHHHHH-CCCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECC Q ss_conf 79999999999649838997-303688874428-9999988762-13688324102569999999874157606975134 Q gi|254780485|r 91 DQVLKEAKNAKENGATRYCM-GAAWREPKERDL-SIIVDMIKGV-KSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNID 167 (328) Q Consensus 91 Eei~~~a~~~~~~G~~~~~l-~~~~~~~~~~~~-~~~~e~i~~i-~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~le 167 (328) T Consensus 16 ~~L~~ei~~l~~~g~d~iHiDImDG~FVpN~t~g~~~i~~ir~~~~~~plDvHLMv-~~P~~~i~~~~~aGad~i~~H~E 94 (223) T PRK08745 16 ARLGEEVDNVLKAGADWVHFDVMDNHYVPNLTIGPMVCQALRKHGITAPIDVHLMV-EPVDRIVPDFADAGATTISFHPE 94 (223) T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEE-CCHHHHHHHHHHCCCCEEEEEEC T ss_conf 99999999999769998998276797077557095999999961899753778983-39899999999739978999606 Q ss_pred CCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCC Q ss_conf 37777320588889899999999999879855770786689899999999999974088886020541120487412445 Q gi|254780485|r 168 TSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEEN 247 (328) Q Consensus 168 t~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~ 247 (328) T Consensus 95 a~~~----------~---~~~i~~ik~~g~k~--GlalnP~-T~~~~l~~~--l~~~----D~VliMtV--~PGf--~GQ 148 (223) T PRK08745 95 ASRH----------V---HRTIQLIKSHGCQA--GLVLNPA-TPVDILDWV--LPEL----DLVLVMSV--NPGF--GGQ 148 (223) T ss_pred CCCC----------H---HHHHHHHHHCCCCE--EEEECCC-CCHHHHHHH--HHHC----CEEEEEEE--CCCC--CCC T ss_conf 4429----------9---99999999839844--6774699-987999998--8647----98999875--6998--875 Q ss_pred CCCCHHHHHHHHHHHHHHCC----CCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCCCCHHHHHHHHHH Q ss_conf 68798999999999999686----8721423115651656899999809988997786651588898999999998 Q gi|254780485|r 248 KKVDPIEHVRIISVARILMP----KSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYNKDTILFNR 319 (328) Q Consensus 248 ~~~~~~e~lr~iAi~RL~lP----~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~~~~~~~~i~~ 319 (328) T Consensus 149 ~f--~~~~l~KI~~l~~~~~~~~~~~~I~VDG---GI~~~ti~~l~~aGad~~V~GSaiF~~~--d~~~~i~~lr~ 217 (223) T PRK08745 149 AF--IPSALDKLRAIRKKIDALGKPIRLEIDG---GVKADNIGAIAAAGADTFVAGSAIFNAP--DYAQVIAQMRA 217 (223) T ss_pred CC--CHHHHHHHHHHHHHHHHCCCCCEEEEEC---CCCHHHHHHHHHCCCCEEEECHHHHCCC--CHHHHHHHHHH T ss_conf 45--6889999999999998649994599978---8798999999986999999741775799--99999999999 |
|
| >PRK08005 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=91.19 E-value=1.2 Score=23.97 Aligned_cols=194 Identities=12% Similarity=0.075 Sum_probs=109.7 Q ss_pred HHHHHHHHHHHCCCEEEEE-ECCCCCCCC-CCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECCCC Q ss_conf 9999999999649838997-303688874-42899999887621368832410256999999987415760697513437 Q gi|254780485|r 92 QVLKEAKNAKENGATRYCM-GAAWREPKE-RDLSIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDTS 169 (328) Q Consensus 92 ei~~~a~~~~~~G~~~~~l-~~~~~~~~~-~~~~~~~e~i~~i~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~let~ 169 (328) T Consensus 14 ~L~~ei~~l~~~g~d~lHiDIMDG~FVPNitfg~~~v~~ir~~t~~p~DvHLMv~-~P~~~i~~~~~~g~d~it~H~Ea~ 92 (210) T PRK08005 14 RYAEALTALHDAPLGSLHLDIEDTSFINNITFGMKTIQAVAQYTRHPLSFHLMVS-SPQRWLPWLAAIRPGWIFIHAESV 92 (210) T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEEC-CHHHHHHHHHHCCCCEEEEECCCC T ss_conf 9999999999779998998288898277456298999999861899807999868-889999999972998599935677 Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCC Q ss_conf 77732058888989999999999987985577078668989999999999997408888602054112048741244568 Q gi|254780485|r 170 ERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKK 249 (328) Q Consensus 170 ~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~ 249 (328) T Consensus 93 ~~----------~---~~~i~~Ik~~g~k~--GlAlnP-~T~i~~~~~~--l~~v----D~VLvMtV--~PGf--~GQ~F 146 (210) T PRK08005 93 QN----------P---SEILADIRAIGAKA--GLALNP-ATPLLPYRYL--ALQL----DALMIMTS--EPDG--RGQQF 146 (210) T ss_pred CC----------H---HHHHHHHHHCCCEE--EEEECC-CCCHHHHHHH--HHCC----CEEEEEEE--CCCC--CCCCC T ss_conf 69----------9---99999999749807--888379-9987998730--4007----98999877--8999--87211 Q ss_pred CCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCCCCHHHHHHHHHH Q ss_conf 7989999999999996868721423115651656899999809988997786651588898999999998 Q gi|254780485|r 250 VDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYNKDTILFNR 319 (328) Q Consensus 250 ~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~~~~~~~~i~~ 319 (328) T Consensus 147 --i~~~~~KI~~~r~~~~~~~I~vDGG---In~~t~~~~~~aGad~~V~GSaiF~~~--d~~~~i~~lr~ 209 (210) T PRK08005 147 --IAAMCEKVSQSREHFPAAECWADGG---ITLRAARLLAAAGAQHLVIGRALFTTA--NYDVTLSQFTA 209 (210) T ss_pred --CHHHHHHHHHHHHHCCCCCEEEECC---CCHHHHHHHHHCCCCEEEECHHHHCCC--CHHHHHHHHHC T ss_conf --7889999999996287788899788---788999999986999999790653699--99999999863 |
|
| >PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=90.47 E-value=1.4 Score=23.54 Aligned_cols=196 Identities=14% Similarity=0.167 Sum_probs=105.3 Q ss_pred HHHHHHHHHHHHCCCEEEEE-ECCCCCCCCCC-HHHHHHHHHH-HCCCCCCEEEECCCCCHHHHHHHHCCCCCEEEEECC Q ss_conf 79999999999649838997-30368887442-8999998876-213688324102569999999874157606975134 Q gi|254780485|r 91 DQVLKEAKNAKENGATRYCM-GAAWREPKERD-LSIIVDMIKG-VKSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNID 167 (328) Q Consensus 91 Eei~~~a~~~~~~G~~~~~l-~~~~~~~~~~~-~~~~~e~i~~-i~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~~~~~le 167 (328) T Consensus 17 ~~ei~~~~~~~~~g~d~lHiDImDG~FVpN~t~g~~~v~~ir~~~~~~~lDvHLMv~~-P~~~i~~~~~~gad~I~~H~E 95 (224) T PTZ00170 17 LDESQDVLSPEGGGADWLHVDVMDGHFVPNLSFGPPVVSSLRKHLPNTFLDVHLMVSD-PERWVDSFAKAGASQFTFHIE 95 (224) T ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECC-HHHHHHHHHHCCCCEEEECCC T ss_conf 9999999863405997899944058507765749789999997179986468998638-888799998628967998500 Q ss_pred CCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCC Q ss_conf 37777320588889899999999999879855770786689899999999999974088886020541120487412445 Q gi|254780485|r 168 TSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEEN 247 (328) Q Consensus 168 t~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~ 247 (328) T Consensus 96 ~~~~-------------~~~~i~~ik~~g~k~G--lAln-P~T~i~~l~~~l--~~~--~iD~VLlMsV--~PG--f~GQ 151 (224) T PTZ00170 96 ATED-------------PKAVARKIRAAGMQVG--VALK-PKTPAEELFPLI--DAG--LVDMVLVMTV--EPG--FGGQ 151 (224) T ss_pred CCCC-------------HHHHHHHHHHHCCCEE--EEEC-CCCCHHHHHHHH--HHC--CCCEEEEEEE--CCC--CCCC T ss_conf 1339-------------9999999997147645--5607-999879999997--114--4578999855--699--8762 Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEECCEEECCCCCCHHHHHHHHH Q ss_conf 68798999999999999686872142311565165689999980998899778665158889899999999 Q gi|254780485|r 248 KKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYNKDTILFN 318 (328) Q Consensus 248 ~~~~~~e~lr~iAi~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~~~~~~~~i~ 318 (328) T Consensus 152 ~F--i~~~l~KI~~lr~~~~~~~I~VDGG---In~~ti~~l~~aGad~~V~GSaiF~~~d--~~~~i~~lr 215 (224) T PTZ00170 152 SF--MHDMMPKVRQLRQRYPHLNIQVDGG---INPDTIDLAAEAGANVIVAGTSIFKAND--RKESIETLR 215 (224) T ss_pred CC--CHHHHHHHHHHHHCCCCCEEEEECC---CCHHHHHHHHHCCCCEEEECHHHHCCCC--HHHHHHHHH T ss_conf 14--5889999999985489975999589---9989999999869999997858867999--999999999 |
|
| >TIGR03278 methan_mark_10 putative methanogenesis marker protein 10 | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.014 Score=36.88 Aligned_cols=135 Identities=20% Similarity=0.189 Sum_probs=82.3 Q ss_pred CCCHHHHHHHHHHHHHC---CCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEE----CCCCCHHHHHHHHCCCC Q ss_conf 06857999999999964---983899730368887442899999887621368832410----25699999998741576 Q gi|254780485|r 87 LINVDQVLKEAKNAKEN---GATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMT----LGMLSFEQAQILSKAGL 159 (328) Q Consensus 87 ~~~~Eei~~~a~~~~~~---G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~----~g~~~~~~~~~Lk~aG~ 159 (328) T Consensus 53 F~pl~~v~~~v~~~L~f~~~~~~kitISgGG-D~S--cYP~l~eL~~~l~~~~lpiHLGYTSGKGfd~~~~a~~li~~Gv 129 (404) T TIGR03278 53 FIPPQVVLGEVQTSLGFRTGRDTKVTISGGG-DVS--CYPELEELTKGLSDLGLPIHLGYTSGKGFDDPEIAEFLIDNGV 129 (404) T ss_pred CCCHHHHHHHHHHHHCCCCCCCEEEEEECCC-CCC--CCCCHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHCCC T ss_conf 7697999999998634567772289980798-844--1631999999998669835741237889898799999996797 Q ss_pred CEEEEE-CCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCC-CCEEEE-CCCCCHHHHHHHHHHHHHCCC Q ss_conf 069751-3437777320588889899999999999879855-770786-689899999999999974088 Q gi|254780485|r 160 DYYNHN-IDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKV-CCGGIL-GLGEMIDDRIDMLLTLANLST 226 (328) Q Consensus 160 ~~~~~~-let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~-~sg~l~-G~gEt~eeri~~l~~lr~l~~ 226 (328) T Consensus 130 ~EVtfTVFatDp~LR~ewM~D~~pE~SL~~L~~fc~~c-ev~~A~ViiPGV-NDGevL~kT~~~Le~wGa 197 (404) T TIGR03278 130 REVSFTVFATDPELRREWMKDPTPEASLQCLRRFCESC-EVHAASVIIPGV-NDGDVLWKTCADLESWGA 197 (404) T ss_pred CEEEEEEEECCHHHHHHHCCCCCHHHHHHHHHHHHHHH-HHEEEEEEECCC-CCHHHHHHHHHHHHHHCC T ss_conf 37999986089899998716998688999999998441-113789980686-856999999999998387 |
Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon. |
| >cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.13 Score=30.57 Aligned_cols=117 Identities=14% Similarity=0.148 Sum_probs=75.3 Q ss_pred HHHHHHHHHHHHHCCCEEEEEE--------CCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCCE Q ss_conf 5799999999996498389973--------03688874428999998876213688324102569999999874157606 Q gi|254780485|r 90 VDQVLKEAKNAKENGATRYCMG--------AAWREPKERDLSIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLDY 161 (328) Q Consensus 90 ~Eei~~~a~~~~~~G~~~~~l~--------~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~ 161 (328) T Consensus 72 ~~emi~ia~~~---kP~~vtLVPe~r~elTTegGld~~~~~~~L~~~i~~lk~~~IrvSLFI-DPd~~qi~~a~~~Gad~ 147 (234) T cd00003 72 TEEMLEIALEV---KPHQVTLVPEKREELTTEGGLDVAGQAEKLKPIIERLKDAGIRVSLFI-DPDPEQIEAAKEVGADR 147 (234) T ss_pred CHHHHHHHHHC---CCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEE-CCCHHHHHHHHHHCCCE T ss_conf 38999999984---998789878887864178892665478899999999986598279972-79878999999849399 Q ss_pred EEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHH Q ss_conf 97513437777320588889899999999999879855770786689899999 Q gi|254780485|r 162 YNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDR 214 (328) Q Consensus 162 ~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eer 214 (328) T Consensus 148 VElhTG~Ya~a~~~~~~~~el~~i~~aa~~A~~lGL~VnA----GHgLn~~Nl 196 (234) T cd00003 148 VELHTGPYANAYDKAEREAELERIAKAAKLARELGLGVNA----GHGLNYENV 196 (234) T ss_pred EEEECHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCEEEC----CCCCCHHHH T ss_conf 9982478786348103999999999999999985987854----789887679 |
In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed, |
| >PRK05265 pyridoxine 5'-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.079 Score=31.94 Aligned_cols=132 Identities=12% Similarity=0.124 Sum_probs=80.3 Q ss_pred HHHHHHHHHHHHHCCCEEEEEE-------CC-CCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCCE Q ss_conf 5799999999996498389973-------03-688874428999998876213688324102569999999874157606 Q gi|254780485|r 90 VDQVLKEAKNAKENGATRYCMG-------AA-WREPKERDLSIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLDY 161 (328) Q Consensus 90 ~Eei~~~a~~~~~~G~~~~~l~-------~~-~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~ 161 (328) T Consensus 75 t~e~i~ia~~~k---P~qvtLVPe~r~e~TTegGld~~~~~~~L~~~i~~lk~~gIrvSLFi-DPd~~~i~~a~~~Gad~ 150 (240) T PRK05265 75 TEEMLDIALEIK---PHQVTLVPEKREELTTEGGLDVAGQFDKLKPAIARLKDAGIRVSLFI-DPDPEQIEAAAEVGADR 150 (240) T ss_pred CHHHHHHHHHCC---CCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEE-CCCHHHHHHHHHHCCCE T ss_conf 188999999849---98599888998862678893776578999999999986598179972-79878999999849399 Q ss_pred EEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECC Q ss_conf 9751343777732058888989999999999987985577078668989999999999997408888602054 Q gi|254780485|r 162 YNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPIN 234 (328) Q Consensus 162 ~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~ 234 (328) T Consensus 151 VElhTG~Ya~a~~~~~~~~el~~i~~aa~~A~~lGL~VnA----GHgLn~~Nl~~-i~~ip~i~----EvsIG 214 (240) T PRK05265 151 IELHTGPYADAKTEAEQAAELERIAEAAALAASLGLGVNA----GHGLNYHNVKP-IAAIPGIE----ELNIG 214 (240) T ss_pred EEEECHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEC----CCCCCHHHHHH-HHCCCCCE----EEECC T ss_conf 9983478786357521999999999999999986987853----78988777899-84489974----88457 |
|
| >pfam03740 PdxJ Pyridoxal phosphate biosynthesis protein PdxJ | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.3 Score=28.00 Aligned_cols=118 Identities=14% Similarity=0.088 Sum_probs=73.9 Q ss_pred CHHHHHHHHHHHHHCCCEEEEEE--------CCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCC Q ss_conf 85799999999996498389973--------0368887442899999887621368832410256999999987415760 Q gi|254780485|r 89 NVDQVLKEAKNAKENGATRYCMG--------AAWREPKERDLSIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLD 160 (328) Q Consensus 89 ~~Eei~~~a~~~~~~G~~~~~l~--------~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g~~~~~~~~~Lk~aG~~ 160 (328) T Consensus 72 ~~~emi~ia~~~k---P~qvtLVPE~r~elTTegGld~~~~~~~L~~~i~~lk~~girvSlFI-Dpd~~~i~~a~~~Gad 147 (239) T pfam03740 72 PTEEMLELALKTK---PHQVTLVPEKREEITTEGGLDVVAQLEKLKPAIRRLKNAGIRVSLFI-DPDPEQIEAAKIVGAD 147 (239) T ss_pred CHHHHHHHHHHCC---CCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEE-CCCHHHHHHHHHCCCC T ss_conf 7499999999849---98589888999873568880633406899999999860785389970-7998999999980929 Q ss_pred EEEEECCCCHHHHHCCCCCC--CHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHH Q ss_conf 69751343777732058888--9899999999999879855770786689899999 Q gi|254780485|r 161 YYNHNIDTSERFYPHVTTTH--TFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDR 214 (328) Q Consensus 161 ~~~~~let~~~~~~~~~~~~--~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eer 214 (328) T Consensus 148 ~VElhTG~YA~a~~~~~~~~~~~l~~i~~aa~~A~~lGL~VnA----GHgLn~~Nl 199 (239) T pfam03740 148 RIELHTGPYADAHNDAEQAREELLERLAAGAALAFDLGLVVNA----GHGLTYHNV 199 (239) T ss_pred EEEEECHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCEEEC----CCCCCHHHH T ss_conf 9985047788775131555799999999999999874985746----789887669 |
Members of this family belong to the PdxJ family that catalyses the condensation of 1-deoxy-d-xylulose-5-phosphate (DXP) and 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one to form pyridoxine 5'-phosphate (PNP). This reaction is involved in de novo synthesis of pyridoxine (vitamin B6) and pyridoxal phosphate. |
| >TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase; InterPro: IPR004620 The enzyme activities methylenetetrahydrofolate reductase (1 | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.34 Score=27.65 Aligned_cols=106 Identities=14% Similarity=0.153 Sum_probs=68.6 Q ss_pred CCCHHHHHHHHHHHHHCCCEEEEEECCCCC------CCCCCHHHHHHHHHHHCCC--CC-----------CEEEEC---- Q ss_conf 068579999999999649838997303688------8744289999988762136--88-----------324102---- Q gi|254780485|r 87 LINVDQVLKEAKNAKENGATRYCMGAAWRE------PKERDLSIIVDMIKGVKSL--GL-----------ETCMTL---- 143 (328) Q Consensus 87 ~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~------~~~~~~~~~~e~i~~i~~~--~~-----------~i~~~~---- 143 (328) T Consensus 84 ~~t~~e~~~~L~~y~~~Gi~~ilALRGD~p~~~~~~~~~~~~~yA~eLV~~Ir~~~g~~GIy~~~E~V~~~F~I~VAaYP 163 (302) T TIGR00676 84 GSTREEIEEILREYRELGIRNILALRGDPPDETDFEPAPGGFKYASELVEFIRSEHGFGGIYLDGEDVTEDFEIGVAAYP 163 (302) T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEECC T ss_conf 68989999999999874886798743768888865658876677689999998368998556477645765505564258 Q ss_pred ----CCCCH----HHHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCC--CCCCEEE Q ss_conf ----56999----9999874157606975134377773205888898999999999998798--5577078 Q gi|254780485|r 144 ----GMLSF----EQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKSGI--KVCCGGI 204 (328) Q Consensus 144 ----g~~~~----~~~~~Lk~aG~~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~G~--~~~sg~l 204 (328) T Consensus 164 E~Hpea~~~~~D~~nLK~KVdAGAd~aIT-----QlFF-------dnd~y~rF~d~c~~aGI~~PI~PGIM 222 (302) T TIGR00676 164 EKHPEAPNLEEDIENLKRKVDAGADYAIT-----QLFF-------DNDDYYRFVDRCRAAGIDVPIIPGIM 222 (302) T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEE-----EEEC-------CHHHHHHHHHHHHHCCCCEEEECCCC T ss_conf 87888888899999999988627780331-----1111-------56678889999998789500016723 |
5.1.20 from EC) and 5,10-methylenetetrahydrofolate reductase (FADH) (1.7.99.5 from EC) differ in that the former (assigned in many eukaryotes) is defined to use NADP+ as an acceptor, while the latter (assigned in many bacteria) is flexible with respect to the acceptor. Both convert 5-methyltetrahydrofolate to 5,10-methylenetetrahydrofolate. From a larger set of proteins assigned as one or the other, this family describes the subset of proteins found in bacteria, and currently designated 5,10-methylenetetrahydrofolate reductase. This protein is an FAD-containing flavoprotein.; GO: 0009086 methionine biosynthetic process. |
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase; InterPro: IPR005990 Synonyms: Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase IMP dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.35 Score=27.63 Aligned_cols=108 Identities=22% Similarity=0.173 Sum_probs=72.0 Q ss_pred CCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECC-CCCHHHHHHHHCCCCCEEEEE Q ss_conf 0685799999999996498389973036888744289999988762136883241025-699999998741576069751 Q gi|254780485|r 87 LINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTLG-MLSFEQAQILSKAGLDYYNHN 165 (328) Q Consensus 87 ~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g-~~~~~~~~~Lk~aG~~~~~~~ 165 (328) T Consensus 234 vg~r~~D~~R~~~L~~AGvDv~viDsshGh-----s~~vl~~ik~~k~~Yp~~~iiaGNVaT~~~a~~LI~AgADg~rVG 308 (476) T TIGR01302 234 VGTREDDLERAEALVEAGVDVIVIDSSHGH-----SIYVLDSIKKIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRVG 308 (476) T ss_pred ECCCCCCHHHHHHHHHCCCCEEEEECCCCC-----CHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHCCCCEEEEC T ss_conf 468986189999999659658998166545-----378999999998638805799434411788988985288878983 Q ss_pred CCC-C----HHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCC Q ss_conf 343-7----77732058888989999999999987985577 Q gi|254780485|r 166 IDT-S----ERFYPHVTTTHTFEDRLQTLENVRKSGIKVCC 201 (328) Q Consensus 166 let-~----~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~s 201 (328) T Consensus 309 iGpGSICTTr~V~gVGvPQ~TA--v~~Va~~A~~~Gi~VIA 347 (476) T TIGR01302 309 IGPGSICTTRIVAGVGVPQITA--VYDVAEYAAQSGIPVIA 347 (476) T ss_pred CCCCCCCEEEEEEECCCHHHHH--HHHHHHHHHHCCCEEEE T ss_conf 6889811001565127626889--99999999727990998 |
1.1.205 from EC,IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP . |
| >pfam05913 DUF871 Bacterial protein of unknown function (DUF871) | Back alignment and domain information |
|---|
Probab=92.10 E-value=0.98 Score=24.61 Aligned_cols=118 Identities=26% Similarity=0.298 Sum_probs=62.2 Q ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCCC-CCCCCHHHHHHHHHHHCCCCCCEEEECCC-------CCHHHHHHHHCCCCC Q ss_conf 8579999999999649838997303688-87442899999887621368832410256-------999999987415760 Q gi|254780485|r 89 NVDQVLKEAKNAKENGATRYCMGAAWRE-PKERDLSIIVDMIKGVKSLGLETCMTLGM-------LSFEQAQILSKAGLD 160 (328) Q Consensus 89 ~~Eei~~~a~~~~~~G~~~~~l~~~~~~-~~~~~~~~~~e~i~~i~~~~~~i~~~~g~-------~~~~~~~~Lk~aG~~ 160 (328) T Consensus 11 ~~e~~~~yi~~a~~~Gf~~iFTSL~i~e~~~~~~~~~~~~l~~~a~~~g~~vi~DIsp~~l~~lg~s~~dl~~~~~lGi~ 90 (357) T pfam05913 11 TFEEDKAYIKLAAKLGFTRIFTSLHIPEDDKEEYLERLKELIKYAKELGMEVIADISPSVLKQLGISYDDLSFLKELGVT 90 (357) T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHCCCCHHHHHHHHHCCCC T ss_conf 87999999999998699899604775788879999999999999998799999987989998819997889999977998 Q ss_pred EEEEEC---------------------CC---------------------CHHHHHCCCCCCCHHHHHHHHHHHHHCCCC Q ss_conf 697513---------------------43---------------------777732058888989999999999987985 Q gi|254780485|r 161 YYNHNI---------------------DT---------------------SERFYPHVTTTHTFEDRLQTLENVRKSGIK 198 (328) Q Consensus 161 ~~~~~l---------------------et---------------------~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~ 198 (328) T Consensus 91 glRlD~Gf~~~eia~ls~n~l~I~LNASti~~~~l~~l~~~~~n~~~l~a~HNfYPr~~TGLs~~~f~~~n~~~k~~gi~ 170 (357) T pfam05913 91 GLRLDYGFTGEEIAELSKNPLKIELNASTITTEYLDNLLSYGANFENLEACHNFYPRPYTGLSYEFFLEKNRWFKKYGIK 170 (357) T ss_pred EEEECCCCCHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCC T ss_conf 99977999989999972799679997864999999999980998789799744479988788999999999999977996 Q ss_pred CCCEEEECC Q ss_conf 577078668 Q gi|254780485|r 199 VCCGGILGL 207 (328) Q Consensus 199 ~~sg~l~G~ 207 (328) T Consensus 171 ~~-AFI~g~ 178 (357) T pfam05913 171 TA-AFIPGD 178 (357) T ss_pred EE-EEEECC T ss_conf 89-997279 |
This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown. |
| >PRK11613 folP dihydropteroate synthase; Provisional | Back alignment and domain information |
|---|
Probab=91.21 E-value=1.2 Score=23.98 Aligned_cols=136 Identities=18% Similarity=0.240 Sum_probs=83.2 Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEECC-CCCC-----CCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCCE Q ss_conf 68579999999999649838997303-6888-----74428999998876213688324102569999999874157606 Q gi|254780485|r 88 INVDQVLKEAKNAKENGATRYCMGAA-WREP-----KERDLSIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLDY 161 (328) Q Consensus 88 ~~~Eei~~~a~~~~~~G~~~~~l~~~-~~~~-----~~~~~~~~~e~i~~i~~~~~~i~~~~g~~~~~~~~~Lk~aG~~~ 161 (328) T Consensus 35 ~~~~~a~~~a~~mi~~GAdiIDIGgeSTrPga~~vs~eeE~~Rl~pvi~~i~~~~-~v~iSIDT~~~~Va~~ale~Ga~i 113 (282) T PRK11613 35 NSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRF-EVWISVDTSKPEVIRESAKAGAHI 113 (282) T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHHHHHCCCCE T ss_conf 8999999999999988996999798258998986898999999999999999735-972999799889999999639788 Q ss_pred EEE--ECCCCHHHHHC-------C---C----CC-----CCHHH-------HH-HHHHHHHHCCCCCCCEEE---ECCCC Q ss_conf 975--13437777320-------5---8----88-----89899-------99-999999987985577078---66898 Q gi|254780485|r 162 YNH--NIDTSERFYPH-------V---T----TT-----HTFED-------RL-QTLENVRKSGIKVCCGGI---LGLGE 209 (328) Q Consensus 162 ~~~--~let~~~~~~~-------~---~----~~-----~~~~~-------~l-~~~~~a~~~G~~~~sg~l---~G~gE 209 (328) T Consensus 114 INDIsg~~-d~~~~~~va~~~~~~vlmH~~g~p~~m~~~~~y~dvi~~v~~~f~~~i~~~~~~Gi~~~~IilDPGiGFgK 192 (282) T PRK11613 114 INDIRSLS-EPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEQAGIAKEKLLLDPGFGFGK 192 (282) T ss_pred EECCCCCC-CHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCC T ss_conf 86632124-86599999972998899806899855332676352799999999999999998799947499806877678 Q ss_pred CHHHHHHHHHHHHHCC Q ss_conf 9999999999997408 Q gi|254780485|r 210 MIDDRIDMLLTLANLS 225 (328) Q Consensus 210 t~eeri~~l~~lr~l~ 225 (328) T Consensus 193 ~~~~n~~ll~~l~~~~ 208 (282) T PRK11613 193 NLSHNYQLLARLAEFH 208 (282) T ss_pred CHHHHHHHHHHHHHHH T ss_conf 8788999998389985 |
|
| >TIGR00559 pdxJ pyridoxal phosphate biosynthetic protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=90.20 E-value=1.5 Score=23.39 Aligned_cols=137 Identities=15% Similarity=0.172 Sum_probs=85.8 Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEE--------CCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCC Q ss_conf 685799999999996498389973--------036888744289999988762136883241025699999998741576 Q gi|254780485|r 88 INVDQVLKEAKNAKENGATRYCMG--------AAWREPKERDLSIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGL 159 (328) Q Consensus 88 ~~~Eei~~~a~~~~~~G~~~~~l~--------~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g~~~~~~~~~Lk~aG~ 159 (328) T Consensus 71 ~~~ee~~~~~~~~knkP-~~vTlVPe~r~evTtegGLDva~~~dkL~~~~~~~~~~GI~vSlFI-d~~~d~i~~A~e~g~ 148 (265) T TIGR00559 71 APTEEMIEIAVEIKNKP-EKVTLVPEKRDEVTTEGGLDVARLKDKLKELVKRLHEAGIEVSLFI-DADKDQISAAAEVGA 148 (265) T ss_pred CCHHHHHHHHHHHCCCC-CEEEECCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEE-CCCHHHHHHHHHCCC T ss_conf 85189999999855899-7387416988603026440001104679999999986798587742-544688899997089 Q ss_pred CEEEEECCCCHHHHHC-------------CCCCCCHHH-----------HHHHHHHHHHCCCCCCCEEEECCCCCHH--- Q ss_conf 0697513437777320-------------588889899-----------9999999998798557707866898999--- Q gi|254780485|r 160 DYYNHNIDTSERFYPH-------------VTTTHTFED-----------RLQTLENVRKSGIKVCCGGILGLGEMID--- 212 (328) Q Consensus 160 ~~~~~~let~~~~~~~-------------~~~~~~~~~-----------~l~~~~~a~~~G~~~~sg~l~G~gEt~e--- 212 (328) T Consensus 149 ~~iE~hTg~YA~~~~~~~~nannqihaisvlkdksP~e~~~el~~aflq~~~as~~A~~~GL~v----~AGHgL~y~Nvk 224 (265) T TIGR00559 149 DRIEIHTGVYANLYNKLYSNANNQIHAISVLKDKSPKELKEELQRAFLQIKKASVYAKSLGLKV----NAGHGLNYHNVK 224 (265) T ss_pred CEEEEECCHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEE----EECCCCCHHHHH T ss_conf 8488502246898887741001321223111158868999999899999999999998749868----614888778999 Q ss_pred HHHHHHH-HHHHCCCCCCEE Q ss_conf 9999999-997408888602 Q gi|254780485|r 213 DRIDMLL-TLANLSTPPESI 231 (328) Q Consensus 213 eri~~l~-~lr~l~~~~~~v 231 (328) T Consensus 225 ~~~~~l~GYl~ElnI-GHa~ 243 (265) T TIGR00559 225 EFAKILEGYLDELNI-GHAI 243 (265) T ss_pred HHHHCCCCHHHHHHH-HHHH T ss_conf 998617401102411-3899 |
PLP is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination , , . PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors . Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy . PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalyzed reactions, enzymatic and non-enzymatic . In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised , , . This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm. |
| >COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=90.08 E-value=1.5 Score=23.33 Aligned_cols=111 Identities=15% Similarity=0.180 Sum_probs=68.2 Q ss_pred CHHHHHHHHHHHHHCCCEEEEEE-------CC-CCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCC Q ss_conf 85799999999996498389973-------03-68887442899999887621368832410256999999987415760 Q gi|254780485|r 89 NVDQVLKEAKNAKENGATRYCMG-------AA-WREPKERDLSIIVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLD 160 (328) Q Consensus 89 ~~Eei~~~a~~~~~~G~~~~~l~-------~~-~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g~~~~~~~~~Lk~aG~~ 160 (328) T Consensus 72 ~teEml~ia~~~---kP~~vtLVPe~r~evTTegGlD~~~~~~~l~~~v~~L~~~GirVSLFi-D~d~~qi~aa~~~gA~ 147 (243) T COG0854 72 PTEEMLAIALKT---KPHQVTLVPEKREEVTTEGGLDVAGQLDKLRDAVRRLKNAGIRVSLFI-DPDPEQIEAAAEVGAP 147 (243) T ss_pred CHHHHHHHHHHC---CCCEEEECCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEE-CCCHHHHHHHHHHCCC T ss_conf 448999999855---987478578964641455563355002469999999985797699972-7998999999984998 Q ss_pred EEEEECCCCHHHHHCCCCCCCHH------HHH-HHHHHHHHCCCCCCCEEEECCCCCH Q ss_conf 69751343777732058888989------999-9999999879855770786689899 Q gi|254780485|r 161 YYNHNIDTSERFYPHVTTTHTFE------DRL-QTLENVRKSGIKVCCGGILGLGEMI 211 (328) Q Consensus 161 ~~~~~let~~~~~~~~~~~~~~~------~~l-~~~~~a~~~G~~~~sg~l~G~gEt~ 211 (328) T Consensus 148 ~IELhT----G~Ya~~~~~~~~~~~~~el~rl~~~a~~A~~lGL~VnA----GHgLty 197 (243) T COG0854 148 RIELHT----GPYADAHDAAEQARADAELERLAKAAKLAAELGLKVNA----GHGLTY 197 (243) T ss_pred EEEEEC----CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEC----CCCCCC T ss_conf 799843----66566478677887999999999999999973945745----888650 |
|
| >pfam10113 Fibrillarin_2 Fibrillarin-like archaeal protein | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0084 Score=38.45 Aligned_cols=105 Identities=23% Similarity=0.347 Sum_probs=77.6 Q ss_pred CCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCCHHHHHHHH Q ss_conf 89899999999999879855770786689899999999999974088886020541120487412445687989999999 Q gi|254780485|r 180 HTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEHVRII 259 (328) Q Consensus 180 ~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~i 259 (328) T Consensus 203 Apl~Eme~Va~~A~k~gkGvEa--I~hiGDGyDdLI~G~~a~~dl~vDv-------fV-vEGgPFNrakd-rl~aFakaV 271 (505) T pfam10113 203 APLDEMKEVAETARKYGKGVEA--IFHVGDGYDDLITGLKAALDLDVDV-------FV-VEGGPFNRAKD-RLKAFARAV 271 (505) T ss_pred CCHHHHHHHHHHHHHHCCCCEE--EEEECCCHHHHHHHHHHHHHCCCCE-------EE-EECCCCCCCCC-HHHHHHHHH T ss_conf 8879999999999984878348--9971477488999999876158758-------99-80787654433-689999888 Q ss_pred HHHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEEC Q ss_conf 9999968687214231156516568999998099889977 Q gi|254780485|r 260 SVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVG 299 (328) Q Consensus 260 Ai~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g 299 (328) T Consensus 272 a~sRIL~~G~VVaTNGAYE----dEcRiGLRsGLN~iitG 307 (505) T pfam10113 272 AASRILVPGKVVATNGAYE----DECRVGLRAGLNAILTG 307 (505) T ss_pred HHHHEECCCCEEECCCCHH----HHHHHHHHHCCCEEECC T ss_conf 8751000684873276107----77888776144311116 |
Members of this family of proteins include archaeal fibrillarin homologs. |
| >COG4018 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.052 Score=33.14 Aligned_cols=104 Identities=25% Similarity=0.320 Sum_probs=72.3 Q ss_pred CHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCEEECCCCCCCCCCCCCHHHHHHHHH Q ss_conf 98999999999998798557707866898999999999999740888860205411204874124456879899999999 Q gi|254780485|r 181 TFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDPIEHVRIIS 260 (328) Q Consensus 181 ~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~~~~~~p~~gt~l~~~~~~~~~e~lr~iA 260 (328) T Consensus 204 PLeEmk~VaEtArk~GkGvea--I~hvgDGyDdli~G~kA~ve~~vDv-------f-vvEGgPFNrA~-dRL~AFa~Ava 272 (505) T COG4018 204 PLEEMKRVAETARKSGKGVEA--ILHVGDGYDDLIDGLKAAVEEVVDV-------F-VVEGGPFNRAE-DRLSAFARAVA 272 (505) T ss_pred CHHHHHHHHHHHHHHCCCCEE--EEEECCCCHHHHHHHHHHHHHCCCE-------E-EECCCCCCHHH-HHHHHHHHHHH T ss_conf 789999999999870888216--9882477077888999998744838-------9-98178754166-78999998787 Q ss_pred HHHHHCCCCCCEEEEHHHHHCHHHHHHHHHHCCCEEEEC Q ss_conf 999968687214231156516568999998099889977 Q gi|254780485|r 261 VARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVG 299 (328) Q Consensus 261 i~RL~lP~~~i~i~~~~~~~~~~~~~~~L~~GaN~~~~g 299 (328) T Consensus 273 a~Ril~pGkvVaTNGAYE----DEcrvGLRaGLN~iltG 307 (505) T COG4018 273 ACRILAPGKVVATNGAYE----DECRVGLRAGLNGILTG 307 (505) T ss_pred HHEECCCCCEEEECCCCH----HHHHHHHHHCHHHHHCC T ss_conf 640104783784067413----66787677320156507 |
|
| >TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0078 Score=38.66 Aligned_cols=88 Identities=16% Similarity=0.319 Sum_probs=50.8 Q ss_pred EEECCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCC Q ss_conf 453078683423212433-5477756410006857999999999964983899730368887442899999887621368 Q gi|254780485|r 58 LNIKTGGCPENCGYCNQS-VHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLG 136 (328) Q Consensus 58 in~~TN~C~~~C~fCaf~-~~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~ 136 (328) T Consensus 25 vFvR~~GCnl~C~~CDT~y~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~V~i-TGGEPllq~~---~~~L~~~l~~~g 100 (238) T TIGR03365 25 MFVRTGGCDYRCSWCDSLFTWDGSAKDTWRPMTAEEVWQELKALGGGTPLHVSL-SGGNPALQKP---LGELIDLGKAKG 100 (238) T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEE-CCCCHHHHCC---HHHHHHHHHHCC T ss_conf 999408989867658988761787887756378999999999834898618994-5998344418---999999998579 Q ss_pred CCEEEE-CCCCCHH Q ss_conf 832410-2569999 Q gi|254780485|r 137 LETCMT-LGMLSFE 149 (328) Q Consensus 137 ~~i~~~-~g~~~~~ 149 (328) T Consensus 101 ~~v~iETnGt~~~~ 114 (238) T TIGR03365 101 YRFALETQGSVWQD 114 (238) T ss_pred CEEEEECCCCCCCC T ss_conf 84999789987600 |
This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine. |
| >COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.032 Score=34.54 Aligned_cols=87 Identities=16% Similarity=0.289 Sum_probs=46.7 Q ss_pred EEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCC Q ss_conf 64530786834232124335-47775641000685799999999996498389973036888744289999988762136 Q gi|254780485|r 57 LLNIKTGGCPENCGYCNQSV-HNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSL 135 (328) Q Consensus 57 ~in~~TN~C~~~C~fCaf~~-~~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~ 135 (328) T Consensus 24 ~vFVR~~GC~l~C~~Cdt~~t~~~~~~~~~~~~~~~~I~~~i~~~~-~~~~~V~l-TGGEP~~~~~l~~Ll~---~l~~~ 98 (212) T COG0602 24 SVFVRFAGCNLRCPGCDTKYTWDFNYGKPGTPMSADEILADIKSLG-YKARGVSL-TGGEPLLQPNLLELLE---LLKRL 98 (212) T ss_pred EEEEECCCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHCC-CCCCEEEE-ECCCCCCCCCHHHHHH---HHHHC T ss_conf 8999768978878998987660633368988258999999998508-88766998-1886466223999999---99858 Q ss_pred CCCEEEEC-CCCCH Q ss_conf 88324102-56999 Q gi|254780485|r 136 GLETCMTL-GMLSF 148 (328) Q Consensus 136 ~~~i~~~~-g~~~~ 148 (328) T Consensus 99 g~~~~lETngti~~ 112 (212) T COG0602 99 GFRIALETNGTIPV 112 (212) T ss_pred CCEEEEECCCCCCC T ss_conf 84099837997155 |
|
| >KOG4039 consensus | Back alignment and domain information |
|---|
Probab=92.48 E-value=0.16 Score=29.89 Aligned_cols=63 Identities=17% Similarity=0.210 Sum_probs=48.8 Q ss_pred CCCCCCCCCCCCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHH Q ss_conf 7868342321243354-77756410006857999999999964983899730368887442899 Q gi|254780485|r 62 TGGCPENCGYCNQSVH-NKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSI 124 (328) Q Consensus 62 TN~C~~~C~fCaf~~~-~~~~~~~~~~~~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~ 124 (328) T Consensus 79 ~~~qg~dV~FcaLgTTRgkaGadgfykvDhDyvl~~A~~AKe~Gck~fvLvSS~GAd~sSrFlY 142 (238) T KOG4039 79 TNEQGPDVLFCALGTTRGKAGADGFYKVDHDYVLQLAQAAKEKGCKTFVLVSSAGADPSSRFLY 142 (238) T ss_pred HHHCCCCEEEEEECCCCCCCCCCCEEEECHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCEEE T ss_conf 6502885689961135555566753761538888899998858970899974267886434202 |
|
| >PRK00915 2-isopropylmalate synthase; Validated | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.074 Score=32.11 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=8.2 Q ss_pred HHHHCCCCCCCEEEECCCC Q ss_conf 9998798557707866898 Q gi|254780485|r 191 NVRKSGIKVCCGGILGLGE 209 (328) Q Consensus 191 ~a~~~G~~~~sg~l~G~gE 209 (328) T Consensus 216 aAv~AGA~~V~~TvnGiGE 234 (511) T PRK00915 216 AAVEGGARQVECTINGIGE 234 (511) T ss_pred HHHHHCCCCEEEEEECCCC T ss_conf 9998390501016960255 |
|
| >PRK09389 (R)-citramalate synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.19 Score=29.41 Aligned_cols=20 Identities=30% Similarity=0.446 Sum_probs=8.5 Q ss_pred HHHHHCCCCCCCEEEECCCC Q ss_conf 99998798557707866898 Q gi|254780485|r 190 ENVRKSGIKVCCGGILGLGE 209 (328) Q Consensus 190 ~~a~~~G~~~~sg~l~G~gE 209 (328) T Consensus 204 laAv~aGA~~V~~TvnG~GE 223 (487) T PRK09389 204 LAALAAGADQCHVTINGIGE 223 (487) T ss_pred HHHHHHCCCEEEEEECCCCC T ss_conf 99999502664334204674 |
|
| >pfam00478 IMPDH IMP dehydrogenase / GMP reductase domain | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.24 Score=28.63 Aligned_cols=71 Identities=25% Similarity=0.274 Sum_probs=32.6 Q ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECC-CCCHHHHHHHHCCCCCEEEEEC Q ss_conf 799999999996498389973036888744289999988762136883241025-6999999987415760697513 Q gi|254780485|r 91 DQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTLG-MLSFEQAQILSKAGLDYYNHNI 166 (328) Q Consensus 91 Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g-~~~~~~~~~Lk~aG~~~~~~~l 166 (328) T Consensus 222 ~~~~eRa~~Lv~aGvDvivIDtAhG-----hs~~vi~~ik~ik~~~p~~~iIaGNVaT~e~a~~Li~aGAD~vKVGi 293 (467) T pfam00478 222 DDDLERAEALVEAGVDVIVIDSAHG-----HSEYVLEMIKWIKKKYPDLDVIAGNVVTAEAARELIDAGADAVKVGI 293 (467) T ss_pred HHHHHHHHHHHHCCCCEEEEECCCC-----CCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHCCCEEEECC T ss_conf 6599999999876998899734454-----41889999999874078773785100589999999970777577556 |
This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family. |
| >PRK00507 deoxyribose-phosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.17 Score=29.64 Aligned_cols=44 Identities=27% Similarity=0.175 Sum_probs=17.7 Q ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHH Q ss_conf 85799999999996498389973036888744289999988762 Q gi|254780485|r 89 NVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGV 132 (328) Q Consensus 89 ~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i 132 (328) T Consensus 72 ~~~~K~~E~~~ai~~GAdEiD~Vin~~~~~~g~~~~v~~ei~~v 115 (221) T PRK00507 72 TTAVKAFEAKDAIANGADEIDMVINIGALKSGDWDAVEADIRAV 115 (221) T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCHHHHHCCCHHHHHHHHHHH T ss_conf 57689999999998599877740259999758488999999999 |
|
| >cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.6 Score=26.01 Aligned_cols=189 Identities=16% Similarity=0.204 Sum_probs=92.8 Q ss_pred CHHHHHHHHHHHCC-CCCCEEEECCCCCHHH----HHHHHCCCCCEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHC Q ss_conf 28999998876213-6883241025699999----998741576069751343777732058888989999999999987 Q gi|254780485|r 121 DLSIIVDMIKGVKS-LGLETCMTLGMLSFEQ----AQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKS 195 (328) Q Consensus 121 ~~~~~~e~i~~i~~-~~~~i~~~~g~~~~~~----~~~Lk~aG~~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~ 195 (328) T Consensus 83 g~e~~l~~i~~~~~~~~~pvI~Si~g~s~ee~~~~a~~~~~~gad~lElNls~-~~~~~~~~~~~~~~~~~~iv~~Vk~~ 161 (325) T cd04739 83 GPEEYLELIRRAKRAVSIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYA-LPTDPDISGAEVEQRYLDILRAVKSA 161 (325) T ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCC-CCCCCCCCCCHHHHHHHHHHHHHHHC T ss_conf 89999999999875359875987168998999999999976499879996566-78885544210688999999999860 Q ss_pred -CCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEE-CCCE----------EECCCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf -9855770786689899999999999974088886020-5411----------204874124456879899999999999 Q gi|254780485|r 196 -GIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIP-INLL----------IPIPGSKFEENKKVDPIEHVRIISVAR 263 (328) Q Consensus 196 -G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~-~~~~----------~p~~gt~l~~~~~~~~~e~lr~iAi~R 263 (328) T Consensus 162 ~~~Pv----~vKLsP~~~di~~ia~aa~~~GA--dgi~liNT~~~~~id~~~~~~~~~~~lSg-~~~~-~~alr~v~~~~ 233 (325) T cd04739 162 VTIPV----AVKLSPFFSALAHMAKQLDAAGA--DGLVLFNRFYQPDIDLETLEVVPNLLLSS-PAEI-RLPLRWIAILS 233 (325) T ss_pred CCCCE----EEECCCCCCHHHHHHHHHHHCCC--CEEEEECCCCCCCCCCCCCEEECCCCCCC-CCCC-HHHHHHHHHHH T ss_conf 78866----99539983009999999997599--88997357665642167641536877457-5300-68899999996 Q ss_pred HHCCCCCCEEE-EHHHHHCHHHHHHHHHHCCCEEEECCEEECCCCCC-----HHHHHHHHHHCCCC Q ss_conf 96868721423-11565165689999980998899778665158889-----89999999982985 Q gi|254780485|r 264 ILMPKSRLRLA-AGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPS-----YNKDTILFNRLGLI 323 (328) Q Consensus 264 L~lP~~~i~i~-~~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~-----~~~~~~~i~~~G~~ 323 (328) T Consensus 234 ~~~~---ipIiG~GGI~s~~Da-~e~ilAGAsaVQv~TA~-~~~G~~i~~~i~~eL~~~m~~~G~~ 294 (325) T cd04739 234 GRVK---ASLAASGGVHDAEDV-VKYLLAGADVVMTTSAL-LRHGPDYIGTLLAGLEAWMEEHGYE 294 (325) T ss_pred CCCC---CCEEEECCCCCHHHH-HHHHHCCCCHHHEEHHH-HHHCCHHHHHHHHHHHHHHHHCCCC T ss_conf 4689---898888895989999-99998098876143234-6418379999999999999983999 |
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive. |
| >PRK07565 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=91.51 E-value=1.1 Score=24.18 Aligned_cols=189 Identities=17% Similarity=0.200 Sum_probs=94.1 Q ss_pred CHHHHHHHHHHHCCC-CCCEEEECCCCCHHH----HHHHHCCCCCEEEEECCCCHHHHHCCCCCCCHHHHHHHHHHHHHC Q ss_conf 289999988762136-883241025699999----998741576069751343777732058888989999999999987 Q gi|254780485|r 121 DLSIIVDMIKGVKSL-GLETCMTLGMLSFEQ----AQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENVRKS 195 (328) Q Consensus 121 ~~~~~~e~i~~i~~~-~~~i~~~~g~~~~~~----~~~Lk~aG~~~~~~~let~~~~~~~~~~~~~~~~~l~~~~~a~~~ 195 (328) T Consensus 85 g~e~~l~~i~~~k~~~~~pvIaSi~g~s~ee~~~~a~~~e~~gadaiElNis~-~~~~~~~~~~~~~~~~~~iv~~V~~~ 163 (333) T PRK07565 85 GPEEYLELIRRAKEAVDIPVIASLNGSSAGGWVDYARQIEEAGADALELNIYY-LPTDPDISGAEVEQRYLDILRAVKSA 163 (333) T ss_pred CHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCC-CCCCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 89999999998775059845987477998999999999976499889997667-79886544465078899999999864 Q ss_pred -CCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEE-CCCE----------EECCCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf -9855770786689899999999999974088886020-5411----------204874124456879899999999999 Q gi|254780485|r 196 -GIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIP-INLL----------IPIPGSKFEENKKVDPIEHVRIISVAR 263 (328) Q Consensus 196 -G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~v~-~~~~----------~p~~gt~l~~~~~~~~~e~lr~iAi~R 263 (328) T Consensus 164 ~~~Pv----~vKLsPn~tdi~~iA~aa~~~Ga--dgv~~iNT~~~~~Id~e~~~~~~~~~lSg-p~~~-~~alr~v~~v~ 235 (333) T PRK07565 164 VSIPV----AVKLSPYFSNLANMAKRLDAAGA--DGLVLFNRFYQPDIDLETLEVVPGLVLST-PAEL-RLPLRWIAILS 235 (333) T ss_pred CCCCE----EEECCCCCCHHHHHHHHHHHCCC--CEEEEECCCCCCCCCCCCCEEECCCCCCC-CCCC-CHHHHHHHHHH T ss_conf 68856----87359982109999999997499--88998436665633155443736866677-4312-07889999996 Q ss_pred HHCCCCCCEEEE-HHHHHCHHHHHHHHHHCCCEEEECCEEECCCCCC-----HHHHHHHHHHCCCC Q ss_conf 968687214231-1565165689999980998899778665158889-----89999999982985 Q gi|254780485|r 264 ILMPKSRLRLAA-GRAMMSDELQALCFFSGANSIFVGDTLLTAKNPS-----YNKDTILFNRLGLI 323 (328) Q Consensus 264 L~lP~~~i~i~~-~~~~~~~~~~~~~L~~GaN~~~~g~~~~t~~g~~-----~~~~~~~i~~~G~~ 323 (328) T Consensus 236 ~~~~---ipIiG~GGI~sg~Da-iE~ilAGAsaVQv~Ta~-~~~G~~v~~~i~~eL~~~m~~~G~~ 296 (333) T PRK07565 236 GRVG---ADLAATTGVHDAEDV-IKMLLAGADVVMIASAL-LRHGPDYIGTILAGLEDWMERHGYE 296 (333) T ss_pred CCCC---CCEEEECCCCCHHHH-HHHHHCCCCHHEEEHHH-HHHCCHHHHHHHHHHHHHHHHCCCC T ss_conf 0469---898888895989999-99998098863362236-6537279999999999999983999 |
|
| >KOG2550 consensus | Back alignment and domain information |
|---|
Probab=92.85 E-value=0.79 Score=25.23 Aligned_cols=169 Identities=15% Similarity=0.164 Sum_probs=95.9 Q ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECC-CCCHHHHHHHHCCCCCEEEEECCCC Q ss_conf 799999999996498389973036888744289999988762136883241025-6999999987415760697513437 Q gi|254780485|r 91 DQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTLG-MLSFEQAQILSKAGLDYYNHNIDTS 169 (328) Q Consensus 91 Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g-~~~~~~~~~Lk~aG~~~~~~~let~ 169 (328) T Consensus 250 e~dK~rl~ll~~aGvdvviLDSSqG-----nS~~qiemik~iK~~yP~l~ViaGNVVT~~qa~nLI~aGaDgLrVGMGsG 324 (503) T KOG2550 250 DDDKERLDLLVQAGVDVVILDSSQG-----NSIYQLEMIKYIKETYPDLQIIAGNVVTKEQAANLIAAGADGLRVGMGSG 324 (503) T ss_pred CHHHHHHHHHHHCCCCEEEEECCCC-----CCHHHHHHHHHHHHHCCCCEEECCCEEEHHHHHHHHHCCCCEEEECCCCC T ss_conf 3016778886634886899966888-----50457999999986688863431655338889999873676057525567 Q ss_pred -----HHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCE----------EECC Q ss_conf -----7773205888898999999999998798557707866898999999999999740888860----------2054 Q gi|254780485|r 170 -----ERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPES----------IPIN 234 (328) Q Consensus 170 -----~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt~eeri~~l~~lr~l~~~~~~----------v~~~ 234 (328) T Consensus 325 SiCiTqevma~GrpQ~T--AVy~va~~A~q~gvpviAD---GGi~~~Ghi~KAl----~lGAstVMmG~lLAgtTEap-G 394 (503) T KOG2550 325 SICITQKVMACGRPQGT--AVYKVAEFANQFGVPCIAD---GGIQNVGHVVKAL----GLGASTVMMGGLLAGTTEAP-G 394 (503) T ss_pred CEEEECEEEECCCCCCC--CHHHHHHHHHHCCCCEECC---CCCCCCHHHHHHH----HCCCHHHHCCCHHCCCCCCC-C T ss_conf 50545301232677620--0326999997649965506---8758731778887----53850631041101023588-6 Q ss_pred CEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEE Q ss_conf 1120487412445687989999999999996868721423 Q gi|254780485|r 235 LLIPIPGSKFEENKKVDPIEHVRIISVARILMPKSRLRLA 274 (328) Q Consensus 235 ~~~p~~gt~l~~~~~~~~~e~lr~iAi~RL~lP~~~i~i~ 274 (328) T Consensus 395 eyf~~~g~r~KkyrGMGSl~AM~~~s~~rY~~e~dkvkiA 434 (503) T KOG2550 395 EYFFRDGVRLKKYRGMGSLDAMESSSQKRYFSEVDKVKIA 434 (503) T ss_pred CEEEECCEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEC T ss_conf 1474247343201176558877512011003665447641 |
|
| >KOG2535 consensus | Back alignment and domain information |
|---|
Probab=91.37 E-value=1.2 Score=24.09 Aligned_cols=173 Identities=15% Similarity=0.140 Sum_probs=92.8 Q ss_pred CCHHHHHHHHHHHHHCCCE----EEEEECCC-CCCCCCCHHHHHH----HHHHHCCC-----------CCC--EEEEC-- Q ss_conf 6857999999999964983----89973036-8887442899999----88762136-----------883--24102-- Q gi|254780485|r 88 INVDQVLKEAKNAKENGAT----RYCMGAAW-REPKERDLSIIVD----MIKGVKSL-----------GLE--TCMTL-- 143 (328) Q Consensus 88 ~~~Eei~~~a~~~~~~G~~----~~~l~~~~-~~~~~~~~~~~~e----~i~~i~~~-----------~~~--i~~~~-- 143 (328) T Consensus 150 dP~~QaR~Rv~QLk~LGHsvDKVE~i~MGGTFMsLPe~YRd~FI~nLHdALSGhts~~v~EAv~yse~s~tKCiGiTIET 229 (554) T KOG2535 150 DPYLQARGRVEQLKQLGHSVDKVEFIVMGGTFMSLPEEYRDYFIRNLHDALSGHTSANVEEAVKYSERSLTKCIGITIET 229 (554) T ss_pred CHHHHHHHHHHHHHHHCCCCCEEEEEEECCEEECCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEEEEEEEC T ss_conf 98888888999999837764206899845622058088899999988877427875478999874031234035689612 Q ss_pred --CCCCHHHHHHHHCCCCCEEEEECCC-CHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCC--HHHHHHHH Q ss_conf --5699999998741576069751343-777732058888989999999999987985577078668989--99999999 Q gi|254780485|r 144 --GMLSFEQAQILSKAGLDYYNHNIDT-SERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGLGEM--IDDRIDML 218 (328) Q Consensus 144 --g~~~~~~~~~Lk~aG~~~~~~~let-~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~gEt--~eeri~~l 218 (328) T Consensus 230 RPDyC~~~Hl~~ML~YGCTRlEiGVQS~YEDVARDTNRGHTV~aVce~F~laKDaG~KvV~HMMPdLPNVg~eRDieqF~ 309 (554) T KOG2535 230 RPDYCLKRHLSDMLTYGCTRLEIGVQSVYEDVARDTNRGHTVKAVCESFHLAKDAGFKVVAHMMPDLPNVGMERDIEQFK 309 (554) T ss_pred CCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEHHHCCCCCCCCHHHHHHHHH T ss_conf 77422126699998608713785100357776521668846899987766300368245023278999985041299999 Q ss_pred HHHHHCCCCCCEEECCCEEECCCCCCCCC------CCCCHHHHHHHHH Q ss_conf 99974088886020541120487412445------6879899999999 Q gi|254780485|r 219 LTLANLSTPPESIPINLLIPIPGSKFEEN------KKVDPIEHVRIIS 260 (328) Q Consensus 219 ~~lr~l~~~~~~v~~~~~~p~~gt~l~~~------~~~~~~e~lr~iA 260 (328) T Consensus 310 E~FenP~FR~DGLKiYPTLVIrGTGLyELWKtgrYk~Y~p~~LvdlvA 357 (554) T KOG2535 310 EYFENPAFRPDGLKIYPTLVIRGTGLYELWKTGRYKSYSPSALVDLVA 357 (554) T ss_pred HHHCCCCCCCCCCEECCEEEEECCCHHHHHHCCCCCCCCHHHHHHHHH T ss_conf 983196768787412226999344279887528866689899999999 |
|
| >PRK12331 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=90.76 E-value=1.3 Score=23.71 Aligned_cols=174 Identities=16% Similarity=0.127 Sum_probs=88.2 Q ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCC-CCHHHHHHHHCCCCCEEEEECC Q ss_conf 857999999999964983899730368887442899999887621368832410256-9999999874157606975134 Q gi|254780485|r 89 NVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTLGM-LSFEQAQILSKAGLDYYNHNID 167 (328) Q Consensus 89 ~~Eei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g~-~~~~~~~~Lk~aG~~~~~~~le 167 (328) T Consensus 152 t~~yyv~~a~~l~~~Gad~I~ikD~aGll~P~~~~eLV~aLk~~~~lpI~~HtH~t~Gla~an~laAieAGaDivD~a~~ 231 (463) T PRK12331 152 TIDYFVKLAKEMQEIGADSICIKDMAGILTPYVAYELVKCIKENVTVPLEVHTHATSGIAEMTYLKAIEAGADIIDTAIS 231 (463) T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEECCC T ss_conf 69999999999996499889986786776889999999999974498569983688757999999999849999962353 Q ss_pred CCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECC-CCCHHHHHHHHHHHHHCCC-------CCCEE-ECCCEEE Q ss_conf 3777732058888989999999999987985577078668-9899999999999974088-------88602-0541120 Q gi|254780485|r 168 TSERFYPHVTTTHTFEDRLQTLENVRKSGIKVCCGGILGL-GEMIDDRIDMLLTLANLST-------PPESI-PINLLIP 238 (328) Q Consensus 168 t~~~~~~~~~~~~~~~~~l~~~~~a~~~G~~~~sg~l~G~-gEt~eeri~~l~~lr~l~~-------~~~~v-~~~~~~p 238 (328) T Consensus 232 ~~s~----g-tsqP~--~~s~v~~l~~~~~~~------~ld~~~l~~i~~y~~~vr~~y~~~~~~~~~~~~~d~~v~~hq 298 (463) T PRK12331 232 PFAG----G-TSQPA--TESMVIALQDLGYDT------GLDLEELSEIAEYFNPIRDHYREEGILNPKVKDVEPKTLIYQ 298 (463) T ss_pred CCCC----C-CCCCC--HHHHHHHHHCCCCCC------CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHEEEC T ss_conf 5467----9-78987--999999985389999------989999999999999999999874478875766774351236 Q ss_pred CCCCCCCCC-------CCC-CHHHHHHHHHHHHHHCCCCCCEEEEH Q ss_conf 487412445-------687-98999999999999686872142311 Q gi|254780485|r 239 IPGSKFEEN-------KKV-DPIEHVRIISVARILMPKSRLRLAAG 276 (328) Q Consensus 239 ~~gt~l~~~-------~~~-~~~e~lr~iAi~RL~lP~~~i~i~~~ 276 (328) T Consensus 299 ~PGGm~snl~~Ql~~~g~~dr~~eV~~e~~~Vr~~lG~~-~~VTP~ 343 (463) T PRK12331 299 VPGGMLSNLLSQLKEQGLADKYEEVLAEVPKVRADLGYP-PLVTPL 343 (463) T ss_pred CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCC-CEECCH T ss_conf 873066789999997784767999999999999974999-835928 |
|
| >PRK07807 inositol-5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.75 E-value=0.81 Score=25.13 Aligned_cols=98 Identities=21% Similarity=0.309 Sum_probs=46.5 Q ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECC-CCCHHHHHHHHCCCCCEEEEECCCCH Q ss_conf 99999999996498389973036888744289999988762136883241025-69999999874157606975134377 Q gi|254780485|r 92 QVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGVKSLGLETCMTLG-MLSFEQAQILSKAGLDYYNHNIDTSE 170 (328) Q Consensus 92 ei~~~a~~~~~~G~~~~~l~~~~~~~~~~~~~~~~e~i~~i~~~~~~i~~~~g-~~~~~~~~~Lk~aG~~~~~~~let~~ 170 (328) T Consensus 227 d~~eR~~aLv~AGvDvlvIDtAHG-----hS~~vi~~vk~iK~~~p~~~viaGNvaT~~~a~~Li~aGad~ikvGiG~G- 300 (479) T PRK07807 227 DVAAKARALLEAGVDVLVIDTAHG-----HQEKMLEAIRAVRALDPGVPLVAGNVVTAEGTRDLVEAGADIVKVGVGPG- 300 (479) T ss_pred CHHHHHHHHHHCCCCEEEEECCCC-----CHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHCCCCEEECCCCCC- T ss_conf 589999999976998999754576-----64899999999984089885787432029999999973999763155578- Q ss_pred HHHHCCCCCC--------CHHHHHHHHHHHHHCCCCC Q ss_conf 7732058888--------9899999999999879855 Q gi|254780485|r 171 RFYPHVTTTH--------TFEDRLQTLENVRKSGIKV 199 (328) Q Consensus 171 ~~~~~~~~~~--------~~~~~l~~~~~a~~~G~~~ 199 (328) T Consensus 301 ----SiCtTr~v~gvG~pq~tAi~~~a~~a~~~gvpi 333 (479) T PRK07807 301 ----AMCTTRMMTGVGRPQFSAVLECAAAARELGAHV 333 (479) T ss_pred ----CCEECCCCCCCCCCHHHHHHHHHHHHHHCCCCE T ss_conf ----324346323778860999999999987569978 |
|
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.29 E-value=0.93 Score=24.75 Aligned_cols=28 Identities=21% Similarity=0.400 Sum_probs=12.8 Q ss_pred EEEHHHHHCHHHHHHHHHHCCCEEEECCE Q ss_conf 23115651656899999809988997786 Q gi|254780485|r 273 LAAGRAMMSDELQALCFFSGANSIFVGDT 301 (328) Q Consensus 273 i~~~~~~~~~~~~~~~L~~GaN~~~~g~~ 301 (328) T Consensus 345 IADGGIr~sGDi-~KAlAaGAd~VMlGsl 372 (499) T PTZ00314 345 IADGGIRSSGDI-VKALALGASCVMLGSM 372 (499) T ss_pred EECCCCCCHHHH-HHHHHCCCCEEEECCC T ss_conf 914784643189-9998728987860841 |
|
Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
| Identity | Alignment graph | Length | Definition | E-value |
| Target | 328 | biotin synthase [Candidatus Liberibacter asiaticus str. | ||
| 1r30_A | 369 | The Crystal Structure Of Biotin Synthase, An S- Ade | 3e-90 | |
| 3cix_A | 348 | X-Ray Structure Of The [fefe]-Hydrogenase Maturase | 5e-43 | |
| 3ciw_A | 348 | X-Ray Structure Of The [fefe]-Hydrogenase Maturase | 6e-43 | |
| 3iiz_A | 348 | X-Ray Structure Of The Fefe-Hydrogenase Maturase Hy | 8e-43 | |
| 2fb2_A | 340 | Structure Of The Moaa Arg17266268ALA TRIPLE MUTANT | 1e-04 | |
| 1tv7_A | 340 | Structure Of The S-Adenosylmethionine Dependent Enz | 1e-04 |
| >gi|42543470|pdb|1R30|A Chain A, The Crystal Structure Of Biotin Synthase, An S- Adenosylmethionine-Dependent Radical Enzyme Length = 369 | Back alignment and structure |
Score = 336 bits (861), Expect = 3e-90, Method: Composition-based stats.
Identities = 168/316 (53%), Positives = 228/316 (72%)
Query: 13 TKKPKVWTSKEVFQIYNMPFNDLLFWSHTVHRKNFEPNHIQLSKLLNIKTGGCPENCGYC 72
+ WT +V +++ P DLLF + VHR++F+P +Q+S LL+IKTG CPE+C YC
Sbjct: 24 SAHRPRWTLSQVTELFEKPLLDLLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYC 83
Query: 73 NQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSIIVDMIKGV 132
QS K+ L+A +L+ V+QVL+ A+ AK G+TR+CMGAAW+ P ERD+ + M++GV
Sbjct: 84 PQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGV 143
Query: 133 KSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDTSERFYPHVTTTHTFEDRLQTLENV 192
K++GLE CMTLG LS QAQ L+ AGLDYYNHN+DTS FY ++ TT T+++RL TLE V
Sbjct: 144 KAMGLEACMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKV 203
Query: 193 RKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSKFEENKKVDP 252
R +GIKVC GGI+GLGE + DR +LL LANL TPPES+PIN+L+ + G+ +N VD
Sbjct: 204 RDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDA 263
Query: 253 IEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLLTAKNPSYNK 312
+ +R I+VARI+MP S +RL+AGR M+++ QA+CF +GANSIF G LLT NP +K
Sbjct: 264 FDFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDK 323
Query: 313 DTILFNRLGLIPDLSA 328
D LF +LGL P +A
Sbjct: 324 DLQLFRKLGLNPQQTA 339
|
| >gi|178847576|pdb|3CIX|A Chain A, X-Ray Structure Of The [fefe]-Hydrogenase Maturase Hyde From Thermotoga Maritima In Complex With Thiocyanate Length = 348 | Back alignment and structure |
Score = 179 bits (454), Expect = 5e-43, Method: Composition-based stats.
Identities = 65/339 (19%), Positives = 132/339 (38%), Gaps = 31/339 (9%)
Query: 8 PEENPTKKPKVWTSK---EVFQIYNMPFNDLLFWSHTVHRKNFEPNHIQLSKLLNIKTGG 64
++ + +T + E I + FN+ LF R+ + + + + ++ +
Sbjct: 5 EILEKLERRE-FTREVLKEALSINDRGFNEALFKLADEIRRKYVGDEVHIRAIIEF-SNV 62
Query: 65 CPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSI 124
C +NC YC NK+ + +++++ A+ A + GA + + E +
Sbjct: 63 CRKNCLYCGLRRDNKN--LKRYRMTPEEIVERARLAVQFGAKTIVLQSG--EDPYYMPDV 118
Query: 125 IVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDTS-ERFYPHVTTTHTFE 183
I D++K +K +G+ ++LG E + +AG D Y +T+ + + +FE
Sbjct: 119 ISDIVKEIKKMGVAVTLSLGEWPREYYEKWKEAGADRYLLRHETANPVLHRKLRPDTSFE 178
Query: 184 DRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSK 243
+RL L +++ G + G ++GL D + L + + I IP P +
Sbjct: 179 NRLNXLLTLKELGYETGAGSMVGLPGQTIDDLVDDLLFLK-EHDFDMVGIGPFIPHPDTP 237
Query: 244 FEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLL 303
KK D ++++++ RIL+P S + + + + GAN I
Sbjct: 238 LANEKKGDFTLTLKMVALTRILLPDSNIPATTAMGTIVPGGREITLRCGANVIMP--NWT 295
Query: 304 TAKNPS-----------YNKD-------TILFNRLGLIP 324
+ + KD + LG P
Sbjct: 296 PSPYRQLYQLYPGKICVFEKDTACIPCVMKMIELLGRKP 334
|
| >gi|178847575|pdb|3CIW|A Chain A, X-Ray Structure Of The [fefe]-Hydrogenase Maturase Hyde From Thermotoga Maritima Length = 348 | Back alignment and structure |
Score = 179 bits (453), Expect = 6e-43, Method: Composition-based stats.
Identities = 65/339 (19%), Positives = 132/339 (38%), Gaps = 31/339 (9%)
Query: 8 PEENPTKKPKVWTSK---EVFQIYNMPFNDLLFWSHTVHRKNFEPNHIQLSKLLNIKTGG 64
++ + +T + E I + FN+ LF R+ + + + + ++ +
Sbjct: 5 EILEKLERRE-FTREVLKEALSINDRGFNEALFKLADEIRRKYVGDEVHIRAIIEF-SNV 62
Query: 65 CPENCGYCNQSVHNKSKLKASKLINVDQVLKEAKNAKENGATRYCMGAAWREPKERDLSI 124
C +NC YC NK+ + +++++ A+ A + GA + + E +
Sbjct: 63 CRKNCLYCGLRRDNKN--LKRYRMTPEEIVERARLAVQFGAKTIVLQSG--EDPYXMPDV 118
Query: 125 IVDMIKGVKSLGLETCMTLGMLSFEQAQILSKAGLDYYNHNIDTS-ERFYPHVTTTHTFE 183
I D++K +K +G+ ++LG E + +AG D Y +T+ + + +FE
Sbjct: 119 ISDIVKEIKKMGVAVTLSLGEWPREYYEKWKEAGADRYLLRHETANPVLHRKLRPDTSFE 178
Query: 184 DRLQTLENVRKSGIKVCCGGILGLGEMIDDRIDMLLTLANLSTPPESIPINLLIPIPGSK 243
+RL L +++ G + G ++GL D + L + + I IP P +
Sbjct: 179 NRLNXLLTLKELGYETGAGSMVGLPGQTIDDLVDDLLFLK-EHDFDMVGIGPFIPHPDTP 237
Query: 244 FEENKKVDPIEHVRIISVARILMPKSRLRLAAGRAMMSDELQALCFFSGANSIFVGDTLL 303
KK D ++++++ RIL+P S + + + + GAN I
Sbjct: 238 LANEKKGDFTLTLKMVALTRILLPDSNIPATTAMGTIVPGGREITLRCGANVIMP--NWT 295
Query: 304 TAKNPS-----------YNKD-------TILFNRLGLIP 324
+ + KD + LG P
Sbjct: 296 PSPYRQLYQLYPGKICVFEKDTACIPXVMKMIELLGRKP 334
|
| >gi|259090313|pdb|3IIZ|A Chain A, X-Ray Structure Of The Fefe-Hydrogenase Maturase Hyde From T. Maritima In Complex With S-Adenosyl-L-Methionine Length = 348 | Back alignment and structure |
Score = 178 bits (452), Expect = 8e-43, Method: Composition-based stats. Identities = 65/339 (19%), Positives = 132/339 (38%), Gaps = 31/339 (9%) Query: 8 PEENPTKKP |