254780573
cysteinyl-tRNA synthetase
| GeneID in NCBI database: | 8209570 | Locus tag: | CLIBASIA_02300 |
| Protein GI in NCBI database: | 254780573 | Protein Accession: | YP_003064986.1 |
| Gene range: | -(709420, 710805) | Protein Length: | 461aa |
| Gene description: | cysteinyl-tRNA synthetase | ||
| COG prediction: | [J] Cysteinyl-tRNA synthetase | ||
| KEGG prediction: | cysS; cysteinyl-tRNA synthetase (EC:6.1.1.16); K01883 cysteinyl-tRNA synthetase [EC:6.1.1.16] | ||
| SEED prediction: | Cysteinyl-tRNA synthetase (EC 6.1.1.16) | ||
| Pathway involved in KEGG: | Aminoacyl-tRNA biosynthesis [PATH:las00970] | ||
| Subsystem involved in SEED: | tRNA aminoacylation, Cys | ||
| sequence | sequence profile | ||
Prediction of Local Sequence Properties
| Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
| Identity | Alignment graph | Length | Definition | Round | E-value |
| Target | 461 | cysteinyl-tRNA synthetase [Candidatus Liberibacter asia | |||
| 315121767 | 461 | cysteinyl-tRNA synthetase [Candidatus Liberibacter sola | 1 | 0.0 | |
| 150395937 | 466 | cysteinyl-tRNA synthetase [Sinorhizobium medicae WSM419 | 1 | 1e-169 | |
| 15964864 | 466 | cysteinyl-tRNA synthetase [Sinorhizobium meliloti 1021] | 1 | 1e-168 | |
| 307300935 | 466 | cysteinyl-tRNA synthetase [Sinorhizobium meliloti BL225 | 1 | 1e-168 | |
| 307946682 | 477 | cysteinyl-tRNA synthetase [Roseibium sp. TrichSKD4] Len | 1 | 1e-166 | |
| 15888416 | 461 | cysteinyl-tRNA synthetase [Agrobacterium tumefaciens st | 1 | 1e-165 | |
| 325292453 | 461 | Cysteinyl-tRNA synthetase [Agrobacterium sp. H13-3] Len | 1 | 1e-164 | |
| 86357063 | 458 | cysteinyl-tRNA synthetase [Rhizobium etli CFN 42] Lengt | 1 | 1e-163 | |
| 254504528 | 475 | cysteinyl-tRNA synthetase [Labrenzia alexandrii DFL-11] | 1 | 1e-162 | |
| 116251309 | 463 | cysteinyl-tRNA synthetase [Rhizobium leguminosarum bv. | 1 | 1e-162 |
| >gi|315121767|ref|YP_004062256.1| cysteinyl-tRNA synthetase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 461 | Back alignment and organism information |
|---|
Score = 792 bits (2045), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/460 (81%), Positives = 418/460 (90%)
Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60
M+K IK+YNTL+R+ EFQAIDPSN+RMYVCGPTVYDFAHIGNARPMIVFDVLYRLLR++
Sbjct: 1 MQKNIKLYNTLKRETIEFQAIDPSNVRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRHH 60
Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120
YGE+CVTYVRNITDIDDKIIERAR++HPSI I++AI +IT KN +QF+ DTT+L CL PT
Sbjct: 61 YGEQCVTYVRNITDIDDKIIERARRDHPSIAIDNAICMITEKNIKQFILDTTKLGCLIPT 120
Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180
HQPRAT +IPQMI LI+ II HGHAYE+NNEI+FDT+S PNYGS S+RKIDEQK G RVP
Sbjct: 121 HQPRATEYIPQMINLIEKIISHGHAYESNNEILFDTNSAPNYGSLSQRKIDEQKTGARVP 180
Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240
EKYHKKNPADF+LWK S+ EPGWESPWG GRPGWHIECSAMSS++LGK+FDIHGGGLDL
Sbjct: 181 EKYHKKNPADFVLWKTSSEEEPGWESPWGIGRPGWHIECSAMSSYHLGKLFDIHGGGLDL 240
Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300
IFPHHENEIAQSCCA R +K AN+WIHNGFLNLEG KMSKSNGNFITINELLETKKFGG+
Sbjct: 241 IFPHHENEIAQSCCAYRTDKIANVWIHNGFLNLEGHKMSKSNGNFITINELLETKKFGGQ 300
Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSALYNDLN 360
+WPAPVIRLAMLMT YREPIDFTVQRL EAEILLSKWP T+ S+G DPAVLSAL+NDLN
Sbjct: 301 AWPAPVIRLAMLMTSYREPIDFTVQRLQEAEILLSKWPPTTESRGKPDPAVLSALFNDLN 360
Query: 361 TVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILL 420
TVSAIQALHKLARES KN DLLP FNASA+ILGIEV +E L+KN+SIAIEKLVQERL+LL
Sbjct: 361 TVSAIQALHKLARESIKNPDLLPTFNASANILGIEVREEPLSKNLSIAIEKLVQERLLLL 420
Query: 421 KMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460
K+K FS+AD IR+QLE KGF+LEDYK+P + QRMTRWKQK
Sbjct: 421 KIKNFSAADSIREQLECKGFVLEDYKDPKSKQRMTRWKQK 460
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Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|150395937|ref|YP_001326404.1| cysteinyl-tRNA synthetase [Sinorhizobium medicae WSM419] Length = 466 | Back alignment and organism information |
|---|
Score = 598 bits (1542), Expect = e-169, Method: Compositional matrix adjust.
Identities = 276/456 (60%), Positives = 349/456 (76%)
Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64
+K+YNTL R+ T+F+ IDP N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ YG
Sbjct: 7 LKLYNTLTREKTDFRPIDPKNVRMYVCGPTVYDFAHIGNARPIIVFDVLFRLLRHVYGTD 66
Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124
VTY RNITD+DDKI RA +++P +P+N+AI +T + +F++D L CL PT QPR
Sbjct: 67 HVTYARNITDVDDKINARALRDYPGLPLNEAIRHVTERTETRFLEDAALLGCLDPTVQPR 126
Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184
AT +IP MI +I+ +I GHAYEA E++FDT S+ YG S+R +DEQ+ G RV + H
Sbjct: 127 ATENIPGMIEIIETLIAKGHAYEAEGEVLFDTRSMAEYGQLSKRNLDEQQAGARVAVEAH 186
Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244
K+NP DF+LWK S EPGWESPWGRGRPGWHIECSAMS YLG+VFDIHGGG+DLIFPH
Sbjct: 187 KRNPGDFVLWKLSAGHEPGWESPWGRGRPGWHIECSAMSGRYLGEVFDIHGGGIDLIFPH 246
Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304
HENEIAQS CA AN+W+HNGFL +EGRKMSKS GNFITI +LL T+KFGGR WP
Sbjct: 247 HENEIAQSRCAHGTAVMANVWMHNGFLQVEGRKMSKSEGNFITIYDLLHTEKFGGRKWPG 306
Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSALYNDLNTVSA 364
V+RLAMLMTHYREPIDF+++RL EAE LLSKWP ++ G DPAV++AL +DLNTV+A
Sbjct: 307 EVLRLAMLMTHYREPIDFSIKRLEEAEHLLSKWPVHGSASGEADPAVVAALTDDLNTVAA 366
Query: 365 IQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKK 424
IQALH LA+++T + L F ASA +LG+E + L++ + I+ V+ERL LLK K
Sbjct: 367 IQALHALAQKATADARHLGAFAASAALLGVEPKEIELDEAVVQEIDGRVRERLELLKSKN 426
Query: 425 FSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460
++ AD IR L ++G L+D K+P+ G+R+T W+ K
Sbjct: 427 YAEADGIRADLLARGIQLKDGKDPETGERVTTWEVK 462
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Species: Sinorhizobium medicae Genus: Sinorhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|15964864|ref|NP_385217.1| cysteinyl-tRNA synthetase [Sinorhizobium meliloti 1021] Length = 466 | Back alignment and organism information |
|---|
Score = 595 bits (1534), Expect = e-168, Method: Compositional matrix adjust.
Identities = 276/456 (60%), Positives = 347/456 (76%)
Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64
+K+YNTL R+ +F+ IDP N+RMYVCGPTVYD+AHIGNARP+IVFDVL+RLLR+ YG
Sbjct: 7 LKLYNTLTREKADFRPIDPQNVRMYVCGPTVYDYAHIGNARPIIVFDVLFRLLRHVYGAD 66
Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124
VTY RNITD+DDKI RA +++P +P+N+AI +T K QF++D T L CL PT QPR
Sbjct: 67 HVTYARNITDVDDKINARALRDYPGLPLNEAIRHVTEKTETQFLEDATVLGCLDPTVQPR 126
Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184
AT +I MI +I+ +I GHAYEA E++FDT S+ +YG S+R +DEQ+ G RV + H
Sbjct: 127 ATENIAGMIEIIEKLIAKGHAYEAEGEVLFDTRSMDDYGQLSKRNLDEQQAGARVAVEAH 186
Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244
KKNP DF+LWK S EPGW+SPWGRGRPGWHIECSAMS YLG VFDIHGGG+DLIFPH
Sbjct: 187 KKNPGDFVLWKLSAEHEPGWDSPWGRGRPGWHIECSAMSGRYLGDVFDIHGGGIDLIFPH 246
Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304
HENEIAQS CA E AN+W+HNGFL +EGRKMSKS GNFITI ELL T+KFGGR WP
Sbjct: 247 HENEIAQSRCAHGTEVMANVWMHNGFLQVEGRKMSKSEGNFITIYELLHTEKFGGRKWPG 306
Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSALYNDLNTVSA 364
V+RLAMLMTHYREPIDF+++RL EAE LLSKWP + G DPAV++AL +DLNTV+A
Sbjct: 307 EVLRLAMLMTHYREPIDFSIKRLEEAEHLLSKWPVYGDAAGEADPAVVTALADDLNTVAA 366
Query: 365 IQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKK 424
IQALH LA++++ + L F ASA +LG+ + L++ + I+ V+ERL LLK K
Sbjct: 367 IQALHALAQKASADSRHLGTFAASAALLGVVPKEVELDEAVVHEIDGRVRERLELLKAKN 426
Query: 425 FSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460
++ AD IR L ++G L+D K+P+ G+R+T W+ K
Sbjct: 427 YAEADGIRADLLARGIQLKDGKDPETGERVTTWEVK 462
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Species: Sinorhizobium meliloti Genus: Sinorhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|307300935|ref|ZP_07580704.1| cysteinyl-tRNA synthetase [Sinorhizobium meliloti BL225C] Length = 466 | Back alignment and organism information |
|---|
Score = 595 bits (1533), Expect = e-168, Method: Compositional matrix adjust.
Identities = 276/456 (60%), Positives = 347/456 (76%)
Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64
+K+YNTL R+ +F+ IDP N+RMYVCGPTVYD+AHIGNARP+IVFDVL+RLLR+ YG
Sbjct: 7 LKLYNTLTREKADFRPIDPQNVRMYVCGPTVYDYAHIGNARPIIVFDVLFRLLRHVYGAD 66
Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124
VTY RNITD+DDKI RA +++P +P+N+AI +T K QF++D T L CL PT QPR
Sbjct: 67 HVTYARNITDVDDKINARALRDYPGLPLNEAIRHVTEKTETQFLEDATVLGCLDPTVQPR 126
Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184
AT +I MI +I+ +I GHAYEA E++FDT S+ +YG S+R +DEQ+ G RV + H
Sbjct: 127 ATENIAGMIEIIEKLIAKGHAYEAEGEVLFDTRSMDDYGQLSKRNLDEQQAGARVAVEAH 186
Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244
KKNP DF+LWK S EPGW+SPWGRGRPGWHIECSAMS YLG VFDIHGGG+DLIFPH
Sbjct: 187 KKNPGDFVLWKLSAEHEPGWDSPWGRGRPGWHIECSAMSGRYLGDVFDIHGGGIDLIFPH 246
Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304
HENEIAQS CA E AN+W+HNGFL +EGRKMSKS GNFITI ELL T+KFGGR WP
Sbjct: 247 HENEIAQSRCAHGTEVMANVWMHNGFLQVEGRKMSKSEGNFITIYELLHTEKFGGRKWPG 306
Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSALYNDLNTVSA 364
V+RLAMLMTHYREPIDF+++RL EAE LLSKWP + G DPAV++AL +DLNTV+A
Sbjct: 307 EVLRLAMLMTHYREPIDFSIKRLEEAEHLLSKWPVYGDAAGEADPAVVTALADDLNTVAA 366
Query: 365 IQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMKK 424
IQALH LA++++ + L F ASA +LG+ + L++ + I+ V+ERL LLK K
Sbjct: 367 IQALHALAQKASADSRHLGTFAASAALLGLVPKEVELDEAVVHEIDGRVRERLELLKAKN 426
Query: 425 FSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460
++ AD IR L ++G L+D K+P+ G+R+T W+ K
Sbjct: 427 YAEADGIRADLLARGIQLKDGKDPETGERVTTWEVK 462
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Species: Sinorhizobium meliloti Genus: Sinorhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|307946682|ref|ZP_07662017.1| cysteinyl-tRNA synthetase [Roseibium sp. TrichSKD4] Length = 477 | Back alignment and organism information |
|---|
Score = 588 bits (1515), Expect = e-166, Method: Compositional matrix adjust.
Identities = 267/458 (58%), Positives = 346/458 (75%)
Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62
K +++ NTL R +F I +N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLL + YG
Sbjct: 19 KGLRVTNTLTRTKEDFVPISDANVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLNHLYG 78
Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122
+ VTY RNITD+DDKI RA ++HP +P+N+AI+ +T + QF D RL CL PTH+
Sbjct: 79 GENVTYARNITDVDDKINARALRDHPDLPLNEAIAKVTERTANQFHVDIARLGCLEPTHE 138
Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182
PRAT HI MI +I +I G+AY A+ E++FDT+S+P YG S+R +DEQK G R+ +
Sbjct: 139 PRATGHIGGMIAMIDTLIAKGNAYVASGEVLFDTTSMPAYGGLSKRNLDEQKAGARIAVE 198
Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242
HKKNPADF+LWK S+ EPGW+SPWGRGRPGWHIECS MS H+LGKVFDIHGGGLDLIF
Sbjct: 199 AHKKNPADFVLWKLSSDEEPGWDSPWGRGRPGWHIECSVMSEHHLGKVFDIHGGGLDLIF 258
Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302
PHHENEIAQSCCA+ +K +N W+HNGFL +EGRKMSKS GNF TI+ELL+ + FGGR W
Sbjct: 259 PHHENEIAQSCCANGTKKMSNYWMHNGFLQVEGRKMSKSEGNFFTIHELLDDETFGGRKW 318
Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSALYNDLNTV 362
P V+RLAMLMTHYREPIDF+ +RL EAE LLSKWP + A+L AL +DLNTV
Sbjct: 319 PGEVLRLAMLMTHYREPIDFSKKRLEEAERLLSKWPAPIETDAAPSEAILEALTDDLNTV 378
Query: 363 SAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKM 422
+AIQ LH+LA E+ +N ++L +++ASA +LG++ K ++ + +I+ V ERL LK
Sbjct: 379 AAIQVLHQLAAEAAQNPEMLGVYSASAALLGVQPVKADTSELDTSSIDARVSERLEQLKA 438
Query: 423 KKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460
K ++ AD IR +L ++G +L+D K+ + G+R+T W+ K
Sbjct: 439 KNWAEADRIRDELAAEGILLKDGKDAETGERVTTWEVK 476
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Species: Roseibium sp. TrichSKD4 Genus: Roseibium Family: Rhodobacteraceae Order: Rhodobacterales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|15888416|ref|NP_354097.1| cysteinyl-tRNA synthetase [Agrobacterium tumefaciens str. C58] Length = 461 | Back alignment and organism information |
|---|
Score = 586 bits (1511), Expect = e-165, Method: Compositional matrix adjust.
Identities = 276/460 (60%), Positives = 342/460 (74%)
Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60
M ++K++NTL R+ +EF ID N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+
Sbjct: 1 MSLRLKLHNTLTREKSEFAPIDADNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHV 60
Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120
YGE VTY RNITD+DDKI RA +++P +P+NDAI +T K QF D L CL PT
Sbjct: 61 YGEDHVTYARNITDLDDKINARALRDYPHLPLNDAIHAVTKKTADQFHDDVAALGCLQPT 120
Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180
+PRAT++I +MIYLI+ +I GHAY+A E++FDT S+ +YG S+R +DEQ+ G RV
Sbjct: 121 VEPRATDYIAEMIYLIERLIERGHAYKAGGEVLFDTRSMADYGQLSKRPLDEQQAGARVA 180
Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240
+ HKKNP DF+LWK S+ EPGWESPWG GRPGWHIECSAM+ YLG+VFDIHGGGLDL
Sbjct: 181 VEAHKKNPGDFVLWKLSSESEPGWESPWGLGRPGWHIECSAMAGRYLGEVFDIHGGGLDL 240
Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300
IFPHHENEIAQS CA AN+W+HNGF+ +EGRKMSKS GNF+TI ELL T KFGGR
Sbjct: 241 IFPHHENEIAQSRCAHGTHVMANVWMHNGFVQVEGRKMSKSEGNFVTIYELLHTDKFGGR 300
Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSALYNDLN 360
WP V+RLAMLMTHYREPIDF+V+RL EAE LLSKWP TS D VL AL +DLN
Sbjct: 301 QWPGEVLRLAMLMTHYREPIDFSVKRLEEAERLLSKWPAAETSDAAADETVLEALADDLN 360
Query: 361 TVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILL 420
TV+A+QALH LA + + LP F ASA +LG+ K +++ I A++ LV+ RL +L
Sbjct: 361 TVAAVQALHALAHAANTDPSRLPAFAASAALLGVLPKKTEMDEAIVSAVDALVELRLEML 420
Query: 421 KMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460
K K F+ AD +R +L KG L+D K+ + G+R T W+ K
Sbjct: 421 KAKNFAEADRLRDELSEKGIQLKDGKDKETGERTTTWELK 460
|
Species: Agrobacterium tumefaciens Genus: Agrobacterium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|325292453|ref|YP_004278317.1| Cysteinyl-tRNA synthetase [Agrobacterium sp. H13-3] Length = 461 | Back alignment and organism information |
|---|
Score = 583 bits (1504), Expect = e-164, Method: Compositional matrix adjust.
Identities = 275/460 (59%), Positives = 342/460 (74%)
Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60
M ++K++NTL R+ TEF ID N+RMYVCGPTVYDFAHIGNARP+IVFDVLYRLLR+
Sbjct: 1 MSLRLKLHNTLTREKTEFAPIDADNVRMYVCGPTVYDFAHIGNARPVIVFDVLYRLLRHV 60
Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120
YGE VTY RNITD+DDKI RA +++P +P+NDAI +T K QF +D L CL PT
Sbjct: 61 YGESHVTYARNITDLDDKINARALRDYPHLPLNDAIHAVTKKTADQFHEDVAALGCLQPT 120
Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVP 180
+PRAT++I +MI +I+ +I GHAY A E++FDT S+ +YG S+R +DEQ+ G RV
Sbjct: 121 VEPRATDYIAEMIDIIEKLIARGHAYAAGGEVLFDTRSMADYGQLSKRPLDEQQAGARVA 180
Query: 181 EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDL 240
+ HKK P DF+LWK S+ EPGWESPWGRGRPGWHIECSAM+ YLG+VFDIHGGGLDL
Sbjct: 181 VEAHKKTPGDFVLWKLSSDNEPGWESPWGRGRPGWHIECSAMAGRYLGEVFDIHGGGLDL 240
Query: 241 IFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR 300
IFPHHENEIAQS CA + AN+W+HNGF+ +EGRKMSKS GNF+TI ELL T+KFGGR
Sbjct: 241 IFPHHENEIAQSRCAHGTQVMANVWMHNGFVQVEGRKMSKSEGNFVTIYELLHTEKFGGR 300
Query: 301 SWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSALYNDLN 360
WP V+RLAMLMTHYREPIDF+V+RL EAE LL+KWP S D VL AL +DLN
Sbjct: 301 QWPGEVLRLAMLMTHYREPIDFSVKRLEEAERLLAKWPAAEASDAAPDETVLDALADDLN 360
Query: 361 TVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILL 420
TV+A+QALH LA + + LP F ASA +LG+ K +++ I A++ LVQ RL +L
Sbjct: 361 TVAAVQALHALAHAANTDPARLPAFAASAALLGVLPKKAEVDEAIVSAVDALVQLRLEML 420
Query: 421 KMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460
K K F+ AD +R +L KG L+D K+ + G+R T W+ K
Sbjct: 421 KAKNFAEADRLRDELSEKGIQLKDGKDKETGERTTTWELK 460
|
Species: Agrobacterium sp. H13-3 Genus: Agrobacterium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|86357063|ref|YP_468955.1| cysteinyl-tRNA synthetase [Rhizobium etli CFN 42] Length = 458 | Back alignment and organism information |
|---|
Score = 580 bits (1495), Expect = e-163, Method: Compositional matrix adjust.
Identities = 267/457 (58%), Positives = 340/457 (74%), Gaps = 5/457 (1%)
Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63
++K+YNTL R+ + F+ ID N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLR+ YGE
Sbjct: 6 ELKLYNTLTREKSAFKPIDAENVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRHVYGE 65
Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123
VTY RNITD+DDKI RA ++HP +P+N+AI +T K QF D L CL P+ +P
Sbjct: 66 DHVTYARNITDVDDKINARALRDHPGLPLNEAIRAVTEKTETQFHADVAELGCLEPSVEP 125
Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183
RAT++I +MI +I+ +I +GHAY A E++FDT S+ +YG S+R +DEQ+ G RV
Sbjct: 126 RATDNIAEMIQIIEKLIGNGHAYVAAGEVLFDTKSMADYGELSKRPLDEQQAGARVAVDA 185
Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243
HKKNP DF+LWK S+ EPGWESPWGRGRPGWHIECSAMS YLG +FDIHGGGLDLIFP
Sbjct: 186 HKKNPGDFVLWKLSSHNEPGWESPWGRGRPGWHIECSAMSRRYLGDIFDIHGGGLDLIFP 245
Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303
HHENEIAQS CA E AN+W+HNGF+ +EGRKMSKS GNF+TI++LL T+ FGGR WP
Sbjct: 246 HHENEIAQSRCAHGTEVMANVWMHNGFVQVEGRKMSKSEGNFVTIHDLLHTETFGGRKWP 305
Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSALYNDLNTVS 363
V+RLAMLMTHYREPIDF+++RL EAE LL+KWP D +VL+AL +DLNTV+
Sbjct: 306 GEVLRLAMLMTHYREPIDFSIKRLEEAERLLAKWPTAEAGDAAPDESVLNALADDLNTVA 365
Query: 364 AIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMK 423
A+QALH LA+ +F ASA +LG+ K +++ + A++ LV RL +LK K
Sbjct: 366 AVQALHALAQPGND-----AVFAASAVLLGVLPKKVEIDEAFAAAVDALVAMRLEVLKAK 420
Query: 424 KFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460
F AD IR +L +KG L+D K+P+ G+R+T W+ K
Sbjct: 421 NFVEADRIRDELGAKGIQLKDGKDPETGERVTTWEVK 457
|
Species: Rhizobium etli Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|254504528|ref|ZP_05116679.1| cysteinyl-tRNA synthetase [Labrenzia alexandrii DFL-11] Length = 475 | Back alignment and organism information |
|---|
Score = 576 bits (1484), Expect = e-162, Method: Compositional matrix adjust.
Identities = 268/462 (58%), Positives = 335/462 (72%), Gaps = 4/462 (0%)
Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62
K +K+ NTL R+ +F AID SN+R+YVCGPTVYDFAHIGNARP IVFDVLYRLLR+ YG
Sbjct: 13 KGLKLTNTLTRQKEDFCAIDDSNVRLYVCGPTVYDFAHIGNARPAIVFDVLYRLLRHLYG 72
Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122
+ VTY RNITD+DDKI RA +++P +P+N+AI+++T K Q+ KD L CL PT Q
Sbjct: 73 AEHVTYARNITDVDDKINARALRDYPDMPLNEAIALVTKKTADQYQKDVAALGCLEPTVQ 132
Query: 123 PRATNHIPQMIYLIQNIILHGHAYEA----NNEIIFDTSSIPNYGSFSRRKIDEQKMGTR 178
PRAT HI M+ +I+ +I GHAY A E++FDT S+PNYG S+RK+DEQ G R
Sbjct: 133 PRATEHIDGMVKMIEQLIEKGHAYVAETPEGGEVLFDTVSMPNYGGLSKRKLDEQIAGAR 192
Query: 179 VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238
+ HKKNP DF+LWK S+P EPGW+SPWGRGRPGWHIECS MS H+LGKVFDIHGGGL
Sbjct: 193 IAVDSHKKNPGDFVLWKLSSPEEPGWDSPWGRGRPGWHIECSVMSEHHLGKVFDIHGGGL 252
Query: 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFG 298
DLIFPHHENEIAQSCCA+ + +N W+HNGF+ +EGRKMSKS GNF TI+ELLET+ FG
Sbjct: 253 DLIFPHHENEIAQSCCANGTKTMSNYWVHNGFVQVEGRKMSKSEGNFFTIHELLETENFG 312
Query: 299 GRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSALYND 358
GR WP V+RLAMLMTHY+EPIDF+V++L EAE LL KWP + VL A+ +D
Sbjct: 313 GRKWPGEVLRLAMLMTHYKEPIDFSVRKLEEAENLLGKWPDLVETDAAPAADVLDAMNDD 372
Query: 359 LNTVSAIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLI 418
LNT +AIQALH LA E+ K+ L F+ASA +LG++ ++ AI + RL
Sbjct: 373 LNTAAAIQALHGLAGEANKDPHKLAEFSASAALLGLKPVAADMSGIDETAIATAITARLE 432
Query: 419 LLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460
L K ++ AD IR +L S+G L+D K+ + G R+T W K
Sbjct: 433 ALNGKNWAEADRIRDELASQGIALKDSKDSETGARVTTWDLK 474
|
Species: Labrenzia alexandrii Genus: Labrenzia Family: Rhodobacteraceae Order: Rhodobacterales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|116251309|ref|YP_767147.1| cysteinyl-tRNA synthetase [Rhizobium leguminosarum bv. viciae 3841] Length = 463 | Back alignment and organism information |
|---|
Score = 575 bits (1482), Expect = e-162, Method: Compositional matrix adjust.
Identities = 270/457 (59%), Positives = 344/457 (75%)
Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63
++K+YNTL R+ + F IDP+N+RMYVCGPTVYDFAHIGNARP+IVFDVL+RLLRY YGE
Sbjct: 6 ELKLYNTLTREKSVFSPIDPNNVRMYVCGPTVYDFAHIGNARPVIVFDVLFRLLRYVYGE 65
Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123
VTY RNITD+DDKI RA ++HP +P+NDAI +T K QF D L CL P +P
Sbjct: 66 DHVTYARNITDVDDKINARALRDHPGLPLNDAIRAVTEKTETQFHADVAELGCLEPNFEP 125
Query: 124 RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183
RAT++I +M +I+ +I +GHAY A+ E++FDT S+ +YG S+R +DEQ+ G R+
Sbjct: 126 RATDNIVEMTEIIEKLIGNGHAYVASGEVLFDTKSMADYGQLSKRPLDEQQAGARIAVDA 185
Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243
HKKNP DF+LWK S+ EPGWESPWGRGRPGWHIECSAMS YLG VFDIHGGGLDLIFP
Sbjct: 186 HKKNPGDFVLWKLSSHNEPGWESPWGRGRPGWHIECSAMSKRYLGDVFDIHGGGLDLIFP 245
Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303
HHENEIAQS CA E AN+W+HNGFL +EGRKMSKS GNF+TI+ELL+T+ FGGR WP
Sbjct: 246 HHENEIAQSRCAHGTEVMANVWMHNGFLQVEGRKMSKSEGNFVTIHELLQTETFGGRKWP 305
Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVLSALYNDLNTVS 363
V+RLAMLMTHYREPIDF+++RL EAE LL+KWP S D +VL+AL +DLNTV+
Sbjct: 306 GQVLRLAMLMTHYREPIDFSIKRLEEAERLLAKWPAAEASDAAPDESVLNALSDDLNTVA 365
Query: 364 AIQALHKLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQERLILLKMK 423
A+QALH LA+ + + +F A+A +LG+ K +++ ++ A++ LV RL +LK K
Sbjct: 366 AVQALHALAQAAHGDPTARAVFAATADLLGLLPKKMEIDEAVASAVDALVAMRLEMLKAK 425
Query: 424 KFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWKQK 460
F+ AD IR +L +KG L+D K+ G+R+T W+ K
Sbjct: 426 NFTEADKIRDELTAKGIQLKDGKDAVTGERVTTWEVK 462
|
Species: Rhizobium leguminosarum Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
| Identity | Alignment graph | Length | Definition | E-value |
| Target | 461 | cysteinyl-tRNA synthetase [Candidatus Liberibacter asia | ||
| PRK00260 | 463 | PRK00260, cysS, cysteinyl-tRNA synthetase; Validated | 1e-171 | |
| TIGR00435 | 465 | TIGR00435, cysS, cysteinyl-tRNA synthetase | 1e-121 | |
| KOG2007 | 586 | KOG2007, KOG2007, KOG2007, Cysteinyl-tRNA synthetase [T | 1e-104 | |
| PLN02946 | 557 | PLN02946, PLN02946, cysteine-tRNA ligase | 1e-100 | |
| PRK14535 | 699 | PRK14535, cysS, cysteinyl-tRNA synthetase; Provisional | 3e-88 | |
| PRK14536 | 490 | PRK14536, cysS, cysteinyl-tRNA synthetase; Provisional | 5e-83 | |
| PRK14534 | 481 | PRK14534, cysS, cysteinyl-tRNA synthetase; Provisional | 2e-57 | |
| COG0215 | 464 | COG0215, CysS, Cysteinyl-tRNA synthetase [Translation, | 1e-149 | |
| pfam01406 | 301 | pfam01406, tRNA-synt_1e, tRNA synthetases class I (C) c | 1e-103 | |
| PTZ00399 | 651 | PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisio | 3e-90 | |
| PRK12418 | 384 | PRK12418, PRK12418, cysteinyl-tRNA synthetase; Provisio | 4e-69 | |
| TIGR03447 | 411 | TIGR03447, mycothiol_MshC, cysteine--1-D-myo-inosityl 2 | 6e-69 | |
| cd00672 | 213 | cd00672, CysRS_core, catalytic core domain of cysteinyl | 5e-44 | |
| cd00672 | 213 | cd00672, CysRS_core, catalytic core domain of cysteinyl | 3e-37 | |
| cd07963 | 156 | cd07963, Anticodon_Ia_Cys, Anticodon-binding domain of | 1e-08 | |
| cd00802 | 143 | cd00802, class_I_aaRS_core, catalytic core domain of cl | 4e-07 | |
| cd00802 | 143 | cd00802, class_I_aaRS_core, catalytic core domain of cl | 7e-06 | |
| PRK00133 | 673 | PRK00133, metG, methionyl-tRNA synthetase; Reviewed | 9e-06 | |
| cd00812 | 314 | cd00812, LeuRS_core, catalytic core domain of leucyl-tR | 3e-05 | |
| pfam09334 | 388 | pfam09334, tRNA-synt_1g, tRNA synthetases class I (M) | 3e-05 | |
| PRK12300 | 897 | PRK12300, leuS, leucyl-tRNA synthetase; Reviewed | 6e-05 | |
| cd00814 | 319 | cd00814, MetRS_core, catalytic core domain of methionin | 1e-04 | |
| PRK11893 | 511 | PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed | 2e-04 | |
| TIGR00395 | 938 | TIGR00395, leuS_arch, leucyl-tRNA synthetase, archaeal | 3e-04 | |
| PRK13208 | 800 | PRK13208, valS, valyl-tRNA synthetase; Reviewed | 0.002 | |
| COG0060 | 933 | COG0060, IleS, Isoleucyl-tRNA synthetase [Translation, | 1e-05 | |
| PRK12268 | 556 | PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed | 8e-05 | |
| COG0143 | 558 | COG0143, MetG, Methionyl-tRNA synthetase [Translation, | 2e-04 | |
| PLN02959 | 1084 | PLN02959, PLN02959, aminoacyl-tRNA ligase | 0.003 | |
| cd00668 | 312 | cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain | 6e-04 |
| >gnl|CDD|178951 PRK00260, cysS, cysteinyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Score = 597 bits (1543), Expect = e-171
Identities = 215/483 (44%), Positives = 287/483 (59%), Gaps = 49/483 (10%)
Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64
+KIYNTL R+ EF+ ++P ++MYVCGPTVYD+AHIG+AR +VFDVL R LRY G K
Sbjct: 3 LKIYNTLTRQKEEFKPLEPGKVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYL-GYK 61
Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124
VTYVRNITDIDDKII+RA +E I + +T + F +D L L P +PR
Sbjct: 62 -VTYVRNITDIDDKIIKRANEEG--ESIKE----LTERYIAAFHEDMDALNVLPPDIEPR 114
Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184
AT HIP++I LI+ +I GHAYEA+ ++ FD P+YG S R +DE + G RV
Sbjct: 115 ATEHIPEIIELIERLIDKGHAYEADGDVYFDVRKFPDYGKLSGRNLDELQAGARVEVAEE 174
Query: 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244
K++P DF LWK + P EP WESPWG+GRPGWHIECSAMS+ YLG+ FDIHGGG DLIFPH
Sbjct: 175 KRDPLDFALWKAAKPGEPSWESPWGKGRPGWHIECSAMSTKYLGETFDIHGGGADLIFPH 234
Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304
HENEIAQS A + AN W+HNGF+ + G KMSKS GNF TI +LL+ +
Sbjct: 235 HENEIAQSEAATG-KPFANYWMHNGFVTVNGEKMSKSLGNFFTIRDLLKK-------YDP 286
Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW-------------PQTSTSKGIIDPAV 351
V+R +L HYR P++F+ + L +A+ L +
Sbjct: 287 EVLRFFLLSAHYRSPLNFSEEALEQAKKALERLYNALAETALGEDDEALLAELEEFKERF 346
Query: 352 LSALYNDLNTVSAIQALHKLARE-----STKNHDLLP----IFNASAHILGIEVCKEHL- 401
+ A+ +D NT A+ L +LARE TK+ + + A A +LG+E +E L
Sbjct: 347 IEAMDDDFNTPEALAVLFELAREINRALETKDKEAAAALAALLRALADVLGLEQDEEALF 406
Query: 402 ----NKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457
++ + IE L++ER K K F+ AD IR +L + G +LED + T W
Sbjct: 407 EAAADELLDAEIEALIEERQEARKAKDFALADAIRDELAALGIVLEDTPDG------TTW 460
Query: 458 KQK 460
++K
Sbjct: 461 RRK 463
|
Length = 463 |
| >gnl|CDD|161877 TIGR00435, cysS, cysteinyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 430 bits (1108), Expect = e-121
Identities = 197/486 (40%), Positives = 278/486 (57%), Gaps = 54/486 (11%)
Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64
+K+YNTL R+ EF+ + ++MYVCGPTVYD+ HIG+AR IVFDVL R LRY G K
Sbjct: 1 LKLYNTLTRQKEEFEPLVQGKVKMYVCGPTVYDYCHIGHARTAIVFDVLRRYLRYL-GYK 59
Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124
V YV+NITDIDDKII+RAR+ S+ ++ + + + +D L L P +PR
Sbjct: 60 -VQYVQNITDIDDKIIKRARENGESVYE------VSERFIEAYFEDMKALNVLPPDLEPR 112
Query: 125 ATNHIPQMIYLIQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183
AT HI ++I I+ +I G+AY ++N ++ FD S +YG S++ +D+ + G RV
Sbjct: 113 ATEHIDEIIEFIEQLIEKGYAYVSDNGDVYFDVSKFKDYGKLSKQDLDQLEAGARVDVDE 172
Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243
K+N DF+LWK S EP W+SPWG+GRPGWHIECSAM+ YLG DIHGGG+DLIFP
Sbjct: 173 AKRNKLDFVLWKSSKEGEPKWDSPWGKGRPGWHIECSAMNDKYLGDQIDIHGGGVDLIFP 232
Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303
HHENEIAQS A ++ A W+HNGFL ++ KMSKS GNF T+ ++L K +
Sbjct: 233 HHENEIAQSEAAFG-KQLAKYWMHNGFLMIDNEKMSKSLGNFFTVRDVL--KNYDPE--- 286
Query: 304 APVIRLAMLMTHYREPIDFT----------VQRLTEAEILLSKWPQTSTSKGIID----- 348
++R +L HYR P+DF+ ++RL +A +L S ++ +
Sbjct: 287 --ILRYFLLSVHYRSPLDFSEELLEAAKNALERLYKALRVLDTTLAYSGNQSLNKFPDEK 344
Query: 349 ---PAVLSALYNDLNTVSAIQALHKLARE------STKNHDLL-----PIFNASAHILGI 394
+ A+ +DLNT +A+ L +LA+ S + LL + + +LG+
Sbjct: 345 EFEARFVEAMDDDLNTANALAVLFELAKSINLTFVSKADAALLIEHLIFLESRLGLLLGL 404
Query: 395 EVCKEH--LNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQ 452
N + IE L++ER I K K F+ AD IR +L KG +LED
Sbjct: 405 PSKPVQAGSNDDELGEIEALIEERSIARKEKDFAKADEIRDELLKKGIVLEDTPQG---- 460
Query: 453 RMTRWK 458
T W+
Sbjct: 461 --TTWR 464
|
This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln). Length = 465 |
| >gnl|CDD|37218 KOG2007, KOG2007, KOG2007, Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 373 bits (958), Expect = e-104
Identities = 178/497 (35%), Positives = 251/497 (50%), Gaps = 59/497 (11%)
Query: 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY 60
++K+YN+L R+ F + + + Y+CGPTVYD +H+G+AR + FD+L R+LR Y
Sbjct: 31 QPTELKLYNSLTRQKEVFIPNNGNKVTWYICGPTVYDSSHMGHARSYVSFDILRRILRDY 90
Query: 61 YGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPT 120
+G VT+V NITD+DDKII+RAR+E +S ++F++D L L PT
Sbjct: 91 FGYD-VTFVMNITDVDDKIIKRARKEEMGEKPLS-LSERFCYYEEEFLQDMAALNVLPPT 148
Query: 121 HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP-NYGSFSRRKIDEQKMGTRV 179
Q R + ++PQ+I IQ II +G+AY + + FD P +YG ++ + Q+ G V
Sbjct: 149 VQTRVSEYVPQIIKFIQKIIDNGYAYAVDGSVYFDVDKFPHSYGKLVGQRKNLQE-GEGV 207
Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239
K++PADF LWK S P EP WESPWG+GRPGWHIECSAM+S LG DIHGGG+D
Sbjct: 208 LSDSRKRSPADFALWKASKPGEPSWESPWGKGRPGWHIECSAMASAILGSQLDIHGGGID 267
Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGG 299
L FPHHENEIAQS A + N ++H G L + G KMSKS NFITI E L KK+
Sbjct: 268 LAFPHHENEIAQSEAAFDDSQWVNYFLHTGHLTINGEKMSKSLKNFITIKEAL--KKYSP 325
Query: 300 RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLS----------------KWPQTSTS 343
R +RLA L+ +R P+D++ + +A L K + +
Sbjct: 326 R-----QLRLAFLLHQWRSPLDYSDSTMEQALQLEKSLNNFFLDVKALLRGAKPFEKLSE 380
Query: 344 K--------GIIDPAVLSALYNDLNTVSAIQALHKL---------ARESTKNHDLLPIFN 386
K G AV +AL ++ +T ++A+ +L N LL
Sbjct: 381 KEAELLEDFGKTQTAVHAALCDNFDTPRVMEAIRELVSQGNAYIRESGERPNSALLKAIA 440
Query: 387 AS----AHILGIEVCKE---------HLNKNISIAIEKLVQERLILLKMKKFSSA-DYIR 432
+ I G+ K + V+E K+ + D +R
Sbjct: 441 SYITKLLKIFGLSEGKGQQYVLEATVMPYVQSLSEFREKVREVAREKKVPEILELCDTLR 500
Query: 433 -KQLESKGFILEDYKNP 448
L G LED K
Sbjct: 501 DSDLLELGVRLEDRKGS 517
|
Length = 586 |
| >gnl|CDD|178532 PLN02946, PLN02946, cysteine-tRNA ligase | Back alignment and domain information |
|---|
Score = 362 bits (930), Expect = e-100
Identities = 190/512 (37%), Positives = 274/512 (53%), Gaps = 82/512 (16%)
Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62
+++ +YNT+ RK F+ + MYVCG T YD +HIG+AR + FDVLYR L++
Sbjct: 58 RELHLYNTMSRKKELFKPKVEGKVGMYVCGVTAYDLSHIGHARVYVTFDVLYRYLKHLGY 117
Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122
E V YVRN TD+DDKII RA + D IS+ + + ++F+ D L CL P+ +
Sbjct: 118 E--VRYVRNFTDVDDKIIARANELG-----EDPISL-SRRYCEEFLSDMAYLHCLPPSVE 169
Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182
PR ++HIPQ+I +I+ I+ +G AY + ++ F P YG S RK+++ + G RV
Sbjct: 170 PRVSDHIPQIIDMIKQILDNGCAYRVDGDVYFSVDKFPEYGKLSGRKLEDNRAGERVAVD 229
Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242
KKNPADF LWK + EP W+SPWG GRPGWHIECSAMS+ YLG FDIHGGG+DL+F
Sbjct: 230 SRKKNPADFALWKAAKEGEPFWDSPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVF 289
Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302
PHHENEIAQSC A + + WIHNGF+ ++ KMSKS GNF TI ++++ +
Sbjct: 290 PHHENEIAQSCAACC-DSNISYWIHNGFVTVDSEKMSKSLGNFFTIRQVIDL-------Y 341
Query: 303 PAPVIRLAMLMTHYREPIDFTV--------------QRLTEAEILLSKWP---------- 338
+RL +L THYR PI+++ Q L + E L +
Sbjct: 342 HPLALRLFLLGTHYRSPINYSDVQLESASERIFYIYQTLHDCEESLQQHDSTFEKDSVPP 401
Query: 339 -------------QTSTSKGIIDPAVLSALYNDLNTVS----------------AIQALH 369
TS S + P L+AL L T++ ++ AL
Sbjct: 402 DTLNCINKFHDEFVTSMSDDLHTPVALAALSEPLKTINDLLHTRKGKKQEKRLESLAALE 461
Query: 370 KLARESTKNHDLLPIFNASAHILGIEVCKEHLNKNISIAIEKLVQ---ERLILLKMKKFS 426
K R+ L+P +++ ++ +E + + E+++Q ER + K K++
Sbjct: 462 KKIRDVLSVLGLMP----TSYSEALQQLREKALRRAKLTEEQVLQKIEERTVARKNKEYE 517
Query: 427 SADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458
+D IRK L + G L D +PD T W+
Sbjct: 518 KSDAIRKDLAAVGIALMD--SPDG----TTWR 543
|
Length = 557 |
| >gnl|CDD|173001 PRK14535, cysS, cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 321 bits (823), Expect = 3e-88
Identities = 188/478 (39%), Positives = 256/478 (53%), Gaps = 58/478 (12%)
Query: 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKC- 65
IYNTL R+ F IDP N+RMYVCG TVYD+ H+G+AR M+VFD++ R LR +C
Sbjct: 230 IYNTLTRQKEPFAPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLR-----ECG 284
Query: 66 --VTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123
+TYVRNITDIDDKII RA + + I +T++ Q +D L L P +P
Sbjct: 285 YPLTYVRNITDIDDKIIARAAEN------GETIGELTARFIQAMHEDADALGVLRPDIEP 338
Query: 124 RATNHIPQMIYLIQNIILHGHAY-EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182
+AT +IPQMI +I+ +I +G AY AN ++ + YG S + +D+ + G RV
Sbjct: 339 KATENIPQMIAMIETLIQNGKAYPAANGDVYYAVREFAAYGQLSGKSLDDLRAGERVEVD 398
Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242
K++P DF+LWK + EP WESPWG GRPGWHIECSAMS + G FDIHGGG DL F
Sbjct: 399 GFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQF 458
Query: 243 PHHENEIAQSCCA---------------DRIEKTANIWIHNGFLNLEGRKMSKSNGNFIT 287
PHHENEIAQS A I W+HNGF+ ++G KMSKS GNF T
Sbjct: 459 PHHENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFT 518
Query: 288 INELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGII 347
I E+L + + V+R +L HYR P++++ L +A+ L++ T +
Sbjct: 519 IREVL-------KQYDPEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPAA 571
Query: 348 DPAV-----------LSALYNDLNTVSAIQALHKLARESTKNHD--LLPIFNASAHILGI 394
+ + +A+ +D TV A+ L +LA E K +D L A I+G+
Sbjct: 572 EFMLSENVNDYTRRFYAAMNDDFGTVEAVAVLFELAGEVNKTNDAQLAGCLKALGGIIGL 631
Query: 395 --EVCKEHLNKNISI------AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444
E L + IE L+ R K ++ +D IR L ILED
Sbjct: 632 LQRDPTEFLQGGAASDGLSNEEIEDLIARRKQARADKNWAESDRIRDLLNEHKIILED 689
|
Length = 699 |
| >gnl|CDD|184731 PRK14536, cysS, cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 303 bits (778), Expect = 5e-83
Identities = 166/509 (32%), Positives = 252/509 (49%), Gaps = 74/509 (14%)
Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63
+++YNTL R+ EFQ I+ ++R+Y CGPTVY++AHIGN R + D L R L + G
Sbjct: 2 ALRLYNTLGRQQEEFQPIEHGHVRLYGCGPTVYNYAHIGNLRTYVFQDTLRRTLHFL-GY 60
Query: 64 KCVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTR 113
+ VT+V NITD+ +DK+++ A++ S+ I + T F +DT R
Sbjct: 61 R-VTHVMNITDVGHLTDDADSGEDKMVKSAQEHGKSV------LEIAAHYTAAFFRDTAR 113
Query: 114 LACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQ 173
L P+ AT HI MI LI+ + GH Y A + FD + P+YGS + +++
Sbjct: 114 LNIERPSIVCNATEHIQDMIALIKRLEARGHTYCAGGNVYFDIRTFPSYGSLASAAVEDL 173
Query: 174 KMGTRVPEKYHKKNPADFILWKRSTPMEPG---WESPWGRGRPGWHIECSAMSSHYLGKV 230
+ G R+ +K+NP DF+LW + E W+SPWGRG PGWHIECSAMS YLG+
Sbjct: 174 QAGARIEHDTNKRNPHDFVLWFTRSKFENHALTWDSPWGRGYPGWHIECSAMSMKYLGEQ 233
Query: 231 FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE 290
DIH GG+D I HH NEIAQ C A + W+H+ FL + KMSKS G F+T++
Sbjct: 234 CDIHIGGVDHIRVHHTNEIAQ-CEAATGKPWVRYWLHHEFLLMNKGKMSKSAGQFLTLSS 292
Query: 291 LLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEIL-------LSKWPQTSTS 343
L E + + R +L HYR + F+ + L A+ +++ + +
Sbjct: 293 LQE------KGFQPLDYRFFLLGGHYRSQLAFSWEALKTAKAARRSLVRRVARVVDAARA 346
Query: 344 KGIIDPAVL------------------------SALYNDLNTVSAIQALHKLAREST-KN 378
L +AL +D +T A+ L KL ++++
Sbjct: 347 TTGSVRGTLAECAAERVAESRASESELLLTDFRAALEDDFSTPKALSELQKLVKDTSVPP 406
Query: 379 HDLLPIFNASAHILGIEVCKE---HLNKNISIA-----IEKLVQERLILLKMKKFSSADY 430
L + A +LG+ + +E L+ + I +L++ R + K F AD
Sbjct: 407 SLCLSVLQAMDTVLGLGLIQEATASLSAQVPAGPSEEEIGQLIEARAHARQTKDFPLADE 466
Query: 431 IRKQLESKGFILEDYKNPDNGQRMTRWKQ 459
IR +L+++G LED T WK+
Sbjct: 467 IRDKLKAEGIELEDTHLG------TIWKR 489
|
Length = 490 |
| >gnl|CDD|173000 PRK14534, cysS, cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 218 bits (557), Expect = 2e-57
Identities = 155/489 (31%), Positives = 238/489 (48%), Gaps = 65/489 (13%)
Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64
+K+YNT + ++E + S++++Y CGPTVY++AHIGN R I D+L + LR
Sbjct: 3 LKLYNTKTKDLSELKNF--SDVKVYACGPTVYNYAHIGNFRTYIFEDLLIKSLRLL-KYN 59
Query: 65 CVTYVRNITDI----------DDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRL 114
V Y NITDI +DK+++ AR+ ++ I+ T+ F D +L
Sbjct: 60 -VNYAMNITDIGHLTGDFDDGEDKVVKAARERGLTV------YEISRFFTEAFFDDCKKL 112
Query: 115 ACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQK 174
+ P A+ +IP MI +++ + +G Y N + FDTS +YG + +++ K
Sbjct: 113 NIVYPDKVLVASEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSCFKSYGQMAGINLNDFK 172
Query: 175 MGT--RVPEKYHKKNPADFILW---KRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGK 229
+ RV K+N +DF+LW + E W+SPWG G P WH+EC+AM+ Y
Sbjct: 173 DMSVSRVEIDKSKRNKSDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKS 232
Query: 230 VFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITIN 289
DIH GG+D I HH NEIA + C +K ++++H FL +E KMSKSN NFITI
Sbjct: 233 TLDIHLGGVDHIGVHHINEIAIAECYLN-KKWCDMFVHGEFLIMEYEKMSKSNNNFITIK 291
Query: 290 ELLETKKFGGRSWPAPV-IRLAMLMTHYREPIDFTVQRLTEAEI----LLSKWPQTSTSK 344
+ LE + F +P+ R L HYR + FT L +I +L+K +S
Sbjct: 292 D-LEDQGF------SPLDFRYFCLTAHYRTQLKFTFNNLKACKIARENMLNKLTYFYSSL 344
Query: 345 GIIDPAVLSA------------LYN--------DLNTVSAIQALHKLARE----STKNHD 380
D +L+ Y+ DLN + L + ++
Sbjct: 345 DQFDLNLLNKDLENIEFSLEKEYYDSFLEKIAFDLNIPQGLALLWDIIKDDNLSFLSKLR 404
Query: 381 LLPIFNASAHI-LGIEVCKEHLNKNISI--AIEKLVQERLILLKMKKFSSADYIRKQLES 437
L F+ + L E+ +E N I I ++ L++ER + K F AD IR+ S
Sbjct: 405 LAFKFDEVLSLGLREEILREIENHRIVIDDNMKSLIEERRLAKCEKDFKRADEIREYFAS 464
Query: 438 KGFILEDYK 446
KGF+L D +
Sbjct: 465 KGFVLIDTE 473
|
Length = 481 |
| >gnl|CDD|30564 COG0215, CysS, Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 523 bits (1348), Expect = e-149
Identities = 212/485 (43%), Positives = 283/485 (58%), Gaps = 49/485 (10%)
Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63
+K+YNTL R+ EF IDP ++MYVCGPTVYD+AHIG+AR +VFDVL R LRY +
Sbjct: 1 MLKLYNTLTRQKEEFVPIDPGKVKMYVCGPTVYDYAHIGHARTYVVFDVLRRYLRYLGYK 60
Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123
VTYVRNITDIDDKII RAR+E SI + + F +D L L P +P
Sbjct: 61 --VTYVRNITDIDDKIINRAREEGLSI------REVAERYIAAFFEDMDALNVLPPDIEP 112
Query: 124 RATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRR-KIDEQKMGTRVPE 181
RAT HI ++I I+ +I G+AY A + ++ FD S +YG S R ++E + G RV
Sbjct: 113 RATEHIDEIIEFIEKLIEKGYAYVADDGDVYFDVSKFKDYGKLSGRDSLEELQAGARVEV 172
Query: 182 KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241
K+NP DF+LWK + P EP W+SPWG+GRPGWHIECSAMS+ YLG+ FDIHGGG DLI
Sbjct: 173 DEEKRNPLDFVLWKAAKPGEPSWDSPWGKGRPGWHIECSAMSTKYLGETFDIHGGGSDLI 232
Query: 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRS 301
FPHHENEIAQS A ++ A W+HNGFLN++G KMSKS GNFIT+ +LL+
Sbjct: 233 FPHHENEIAQSEAATGVKPFAKYWMHNGFLNIDGEKMSKSLGNFITVRDLLKK------- 285
Query: 302 WPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT---------STSKGIIDP--- 349
+ V+RL +L +HYR P+DF+ + L EA+ L + +
Sbjct: 286 YDPEVLRLFLLSSHYRSPLDFSEELLEEAKKALERLYNALRRLRDLAGDAELADLKEFEA 345
Query: 350 AVLSALYNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGIEVCKEHL 401
AL +D NT A+ L +LA+E + + +L A ILG++V
Sbjct: 346 RFREALDDDFNTPKALAVLFELAKEINRLLEEGKSDAKAVLSALKALLAILGLKVLGLFP 405
Query: 402 N------KNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455
++ IE L++ERL K K ++ AD IR +L + G ILED + T
Sbjct: 406 QSGAQEDESDDEEIEALIEERLEARKAKNWALADEIRDELLALGIILEDTPDG------T 459
Query: 456 RWKQK 460
W++K
Sbjct: 460 TWRRK 464
|
Length = 464 |
| >gnl|CDD|110410 pfam01406, tRNA-synt_1e, tRNA synthetases class I (C) catalytic domain | Back alignment and domain information |
|---|
Score = 372 bits (957), Expect = e-103
Identities = 145/315 (46%), Positives = 197/315 (62%), Gaps = 17/315 (5%)
Query: 17 EFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDID 76
F + + MYVCGPTVYD +HIG+AR + FDVL R L+ + V +V+N TDID
Sbjct: 1 FFVPLHQGKVNMYVCGPTVYDDSHIGHARSAVAFDVLRRYLQALGYD--VQFVQNFTDID 58
Query: 77 DKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLI 136
DKII+RA+Q+ S + ++ + KD L L P +PR T HI ++I I
Sbjct: 59 DKIIKRAQQQGESFRE------LAARFITAYTKDMDALNVLPPDLEPRVTEHIDEIIEFI 112
Query: 137 QNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWK 195
+ +I G+AY + N ++ FD SS P+YG S + +++ + G R K++P DF LWK
Sbjct: 113 ERLIKKGYAYVSDNGDVYFDVSSFPDYGKLSGQNLEQLEAGARGEVGEGKRDPLDFALWK 172
Query: 196 RSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCA 255
S EP W+SPWG+GRPGWHIECSAM+ YLG DIHGGG+DL FPHHENEIAQS A
Sbjct: 173 ASKEGEPSWDSPWGKGRPGWHIECSAMARKYLGSQIDIHGGGVDLKFPHHENEIAQSEAA 232
Query: 256 DRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTH 315
+ A W+HNG L +EG KMSKS GNF+TI ++L K++ R ++R +L H
Sbjct: 233 FDQQ-LAKYWLHNGHLMIEGEKMSKSLGNFLTIRDVL--KRYDPR-----ILRYFLLSVH 284
Query: 316 YREPIDFTVQRLTEA 330
YR P+DF+ + L +A
Sbjct: 285 YRSPLDFSEELLEQA 299
|
This family includes only cysteinyl tRNA synthetases. Length = 301 |
| >gnl|CDD|185597 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional | Back alignment and domain information |
|---|
Score = 327 bits (841), Expect = 3e-90
Identities = 160/424 (37%), Positives = 228/424 (53%), Gaps = 52/424 (12%)
Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64
+K+ N+L EF + +R Y CGPTVYD +H+G+AR + FD++ R+L Y+G
Sbjct: 40 LKVNNSLTGGKVEFVPQNGRQVRWYTCGPTVYDSSHLGHARTYVTFDIIRRILEDYFGYD 99
Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124
V YV NITDIDDKII+RAR+E SI + K ++F +D L P R
Sbjct: 100 -VFYVMNITDIDDKIIKRAREEKLSI-----FLELARKWEKEFFEDMKALNVRPPDVITR 153
Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIFDT----SSIPNYGSFSRRKI-DEQKM---- 175
+ ++P+++ IQ II +G AYE+N + FD + Y + DE ++
Sbjct: 154 VSEYVPEIVDFIQKIIDNGFAYESNGSVYFDVEAFRKAGHVYPKLEPESVADEDRIAEGE 213
Query: 176 GTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHG 235
G K++P DF LWK S P EP W+SPWG+GRPGWHIECSAM+S+ LG DIH
Sbjct: 214 GALGKVSGEKRSPNDFALWKASKPGEPSWDSPWGKGRPGWHIECSAMASNILGDPIDIHS 273
Query: 236 GGLDLIFPHHENEIAQS-CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294
GG+DL FPHH+NE+AQS D+ + N ++H+G L+++G KMSKS NFITI + L
Sbjct: 274 GGIDLKFPHHDNELAQSEAYFDK-HQWVNYFLHSGHLHIKGLKMSKSLKNFITIRQAL-- 330
Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA--------------EILLSKWPQT 340
K+ R IRL L+ + +P++++ + + EA +I L + T
Sbjct: 331 SKYTARQ-----IRLLFLLHKWDKPMNYSDESMDEAIEKDKVFFNFFANVKIKLRESELT 385
Query: 341 STSKGIIDP------------AVLSALYNDLNTVSAIQALHKLARESTKNHDLLPIFNAS 388
S K AV +AL ++ +T A+QAL KL S N L S
Sbjct: 386 SPQKWTQHDFELNELFEETKSAVHAALLDNFDTPEALQALQKLI--SATNTYLNSGEQPS 443
Query: 389 AHIL 392
A +L
Sbjct: 444 APLL 447
|
Length = 651 |
| >gnl|CDD|183518 PRK12418, PRK12418, cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 257 bits (660), Expect = 4e-69
Identities = 129/358 (36%), Positives = 190/358 (53%), Gaps = 33/358 (9%)
Query: 27 RMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQE 86
MYVCG T YD H+G+A + FD++ R+ R G V YV+N+TD+DD ++ERA ++
Sbjct: 11 TMYVCGITPYDATHLGHAATYLAFDLVNRVWRDA-GHD-VHYVQNVTDVDDPLLERAARD 68
Query: 87 HPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAY 146
D + + F +D L L P A IP+++ L++ ++ G AY
Sbjct: 69 G-----VDWRDLAERE-IALFREDMEALRVLPPRDYVGAVESIPEVVELVEKLLASGAAY 122
Query: 147 EANNE----IIFDTSSIPNYGSFSRRKIDEQKM----GTRV--PEKYHKKNPADFILWKR 196
++E + F + P +G S D M R P++ K++P D +LW+
Sbjct: 123 VVDDEEYPDVYFSVDATPQFGYESG--YDRATMLELFAERGGDPDRPGKRDPLDALLWRA 180
Query: 197 STPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCAD 256
+ P EP W SP+G GRPGWHIECSA++ + LG FDI GGG DLIFPHHE A + A
Sbjct: 181 ARPGEPSWPSPFGPGRPGWHIECSAIALNRLGSGFDIQGGGSDLIFPHHEFSAAHAEAAT 240
Query: 257 RIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHY 316
+ A ++H G + L+G KMSKS GN + ++ L PA IRLA+L HY
Sbjct: 241 GERRFARHYVHAGMIGLDGEKMSKSRGNLVFVSRLR-----AAGVDPA-AIRLALLAGHY 294
Query: 317 REPIDFTVQRLTEAEILLSKW------PQTSTSKGIIDPAVLSALYNDLNTVSAIQAL 368
R ++T L EAE L++W P + ++ V +AL +DL+T A+ A+
Sbjct: 295 RADREWTDAVLAEAEARLARWRAAAALPAGPDAADVVA-RVRAALADDLDTPGALAAV 351
|
Length = 384 |
| >gnl|CDD|132488 TIGR03447, mycothiol_MshC, cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase | Back alignment and domain information |
|---|
Score = 256 bits (657), Expect = 6e-69
Identities = 127/391 (32%), Positives = 198/391 (50%), Gaps = 37/391 (9%)
Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64
+++++T + ++ + MYVCG T YD H+G+A + FD++ R+ R
Sbjct: 18 LRLFDTADGQVRPVEP--GPEAGMYVCGITPYDATHLGHAATYLTFDLVNRVWRD--AGH 73
Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAIS--IITSKNTQQFVKDTTRLACLAPTHQ 122
V YV+N+TD+DD + ERA + D + + + F +D L L P
Sbjct: 74 RVHYVQNVTDVDDPLFERAER--------DGVDWRELGTSQIDLFREDMEALRVLPPRDY 125
Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNE----IIFDTSSIPNYGSFSRRKIDEQKMGTR 178
A I ++I +++ ++ G AYE + F + +G S D M
Sbjct: 126 IGAVESIDEVIEMVEKLLAAGAAYEVEGPEYPDVYFSIEATEQFGYESG--YDRATMLEL 183
Query: 179 V------PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFD 232
P++ K++P D +LW+ + EP W+SP+G GRPGWHIECSA++++ LG FD
Sbjct: 184 FAERGGDPDRPGKRDPLDALLWRAAREGEPSWDSPFGPGRPGWHIECSAIATNRLGAGFD 243
Query: 233 IHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELL 292
I GGG DLIFPHHE A + A + + A ++H G + L+G KMSKS GN + +++L
Sbjct: 244 IQGGGSDLIFPHHEFSAAHAEAATGVRRMARHYVHAGMIGLDGEKMSKSLGNLVFVSKL- 302
Query: 293 ETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL 352
+ G PA IRL +L HYR+ D+T L EAE L++W + D L
Sbjct: 303 --RAAGVD--PA-AIRLGLLAGHYRQDRDWTDAVLAEAEARLARWRAALAATDAPDATDL 357
Query: 353 -----SALYNDLNTVSAIQALHKLARESTKN 378
L NDL+T +A+ A+ A + +
Sbjct: 358 IARLRQHLANDLDTPAALAAVDNWAAAALSS 388
|
Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione. Length = 411 |
| >gnl|CDD|173899 cd00672, CysRS_core, catalytic core domain of cysteinyl tRNA synthetase | Back alignment and domain information |
|---|
Score = 174 bits (443), Expect = 5e-44
Identities = 63/109 (57%), Positives = 78/109 (71%), Gaps = 8/109 (7%)
Query: 215 WHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLE 274
WHIECSAM+ YLG+ FDIHGGG+DLIFPHHENEIAQS A + A W+H G L ++
Sbjct: 113 WHIECSAMAMKYLGETFDIHGGGVDLIFPHHENEIAQSEAA-TGKPFARYWLHTGHLTID 171
Query: 275 GRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT 323
G KMSKS GNFIT+ + L KK+ V+RLA+L +HYR P+DF+
Sbjct: 172 GEKMSKSLGNFITVRDAL--KKYDPE-----VLRLALLSSHYRSPLDFS 213
|
Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Length = 213 |
| >gnl|CDD|173899 cd00672, CysRS_core, catalytic core domain of cysteinyl tRNA synthetase | Back alignment and domain information |
|---|
Score = 151 bits (385), Expect = 3e-37
Identities = 59/125 (47%), Positives = 77/125 (61%), Gaps = 11/125 (8%)
Query: 6 KIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY-YGEK 64
++YNTL R+ EF ++P + MYVCGPTVYD+AHIG+AR +VFDVL R L Y
Sbjct: 1 RLYNTLTRQKEEFVPLNPGLVTMYVCGPTVYDYAHIGHARTYVVFDVLRRYLEDLGYK-- 58
Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124
V YV+NITDIDDKII+RAR+E + + + T++F +D L L P PR
Sbjct: 59 -VRYVQNITDIDDKIIKRAREEG--LSWKE----VADYYTKEFFEDMKALNVLPPDVVPR 111
Query: 125 ATNHI 129
HI
Sbjct: 112 VW-HI 115
|
Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Length = 213 |
| >gnl|CDD|153417 cd07963, Anticodon_Ia_Cys, Anticodon-binding domain of cysteinyl tRNA synthetases | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 1e-08
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 16/108 (14%)
Query: 353 SALYNDLNTVSAIQALHKLARE----STKNHDLLPIFNAS----AHILGI--EVCKEHLN 402
+A+ +D NT A+ L +LARE ++ + A +LG+ + + L
Sbjct: 40 AAMDDDFNTPEALAVLFELAREINRLKKEDIEKAAALAALLKALGGVLGLLQQDPEAFLQ 99
Query: 403 KNISI------AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILED 444
IE L+ +R K K ++ AD IR +L ++G ILED
Sbjct: 100 GGTGEGGLSVAEIEALIAQRNQARKAKDWAEADRIRDELAAQGIILED 147
|
This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA. Length = 156 |
| >gnl|CDD|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino acyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 4e-07
Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 4/69 (5%)
Query: 214 GWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL 273
+ +A DIH GG D + H E + A + G +
Sbjct: 77 EYMFLQAADFLLLYETECDIHLGGSDQLG-HIELGLELLKKAGG--PARPFGLTFGRVMG 133
Query: 274 E-GRKMSKS 281
G KMSKS
Sbjct: 134 ADGTKMSKS 142
|
Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Length = 143 |
| >gnl|CDD|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino acyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 7e-06
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERA 83
G T + HIG+ R ++ FD L + R + V + I D I + A
Sbjct: 1 TTFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYK--VRCIALIDDAGGLIGDPA 54
|
Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Length = 143 |
| >gnl|CDD|178889 PRK00133, metG, methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 9e-06
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 13/65 (20%)
Query: 268 NGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIR--LAMLMTHYREPIDFT-- 323
+GFL +EG KMSKS G FI L+ +R LA + + +DF
Sbjct: 320 HGFLTVEGAKMSKSRGTFIWARTYLDH-------LDPDYLRYYLAAKLPETIDDLDFNWE 372
Query: 324 --VQR 326
QR
Sbjct: 373 DFQQR 377
|
Length = 673 |
| >gnl|CDD|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA synthetases | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 3e-05
Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 7/47 (14%)
Query: 266 IHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAML 312
I G + LEG KMSKS GN +T +E + KK+G A RL +L
Sbjct: 264 IVQGMVLLEGEKMSKSKGNVVTPDEAI--KKYG-----ADAARLYIL 303
|
Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. Length = 314 |
| >gnl|CDD|117876 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M) | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 3e-05
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 10/64 (15%)
Query: 268 NGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIR--LAMLMTHYREPIDFTVQ 325
+G+L +EG KMSKS GN + +ELL+ + +R LA ++ DF+ +
Sbjct: 315 HGWLTVEGGKMSKSRGNVVDPDELLDR-------YGVDALRYYLAREAPEGKD-GDFSWE 366
Query: 326 RLTE 329
E
Sbjct: 367 DFVE 370
|
This family includes methionyl tRNA synthetases. Length = 388 |
| >gnl|CDD|183418 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 6e-05
Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 7/43 (16%)
Query: 268 NGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLA 310
NGF+ LEG+KMSKS GN I + + +E ++G A V+RL
Sbjct: 568 NGFVLLEGKKMSKSKGNVIPLRKAIE--EYG-----ADVVRLY 603
|
Length = 897 |
| >gnl|CDD|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA synthetases | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 1e-04
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 7/46 (15%)
Query: 268 NGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLM 313
+G+L +EG+KMSKS GN + ++LLE + A +R +L
Sbjct: 271 HGYLTVEGKKMSKSRGNVVDPDDLLER-------YGADALRYYLLR 309
|
Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function. Length = 319 |
| >gnl|CDD|183364 PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 2e-04
Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
Query: 268 NGFLNLEGRKMSKSNGNFITINELLETKKFG 298
+GFL L+G KMSKS GN I +L++ ++G
Sbjct: 290 HGFLTLDGEKMSKSLGNVIDPFDLVD--EYG 318
|
Length = 511 |
| >gnl|CDD|161856 TIGR00395, leuS_arch, leucyl-tRNA synthetase, archaeal and cytosolic family | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 3e-04
Identities = 21/45 (46%), Positives = 29/45 (64%), Gaps = 7/45 (15%)
Query: 268 NGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAML 312
NG++ LEG+KMSKS GN +T+ + +E KFG A V RL +
Sbjct: 611 NGYVMLEGKKMSKSKGNVLTLEQAVE--KFG-----ADVARLYIA 648
|
The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS. Length = 938 |
| >gnl|CDD|183895 PRK13208, valS, valyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.002
Identities = 23/46 (50%), Positives = 29/46 (63%), Gaps = 7/46 (15%)
Query: 263 NIWIHNGF-LNLEGRKMSKSNGNFITINELLETKKFGG---RSWPA 304
NI I +G L+ +G+KMSKS GN +T ELLE K+G R W A
Sbjct: 519 NIMI-SGMVLDPDGKKMSKSKGNVVTPEELLE--KYGADAVRYWAA 561
|
Length = 800 |
| >gnl|CDD|30409 COG0060, IleS, Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 1e-05
Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 17/132 (12%)
Query: 266 IHNGF-LNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTV 324
+ +GF L+ +GRKMSKS GN + +++ K+G A ++RL + + Y E + F+
Sbjct: 590 LTHGFVLDEKGRKMSKSLGNVVDPQDVI--DKYG-----ADILRLWVASSDYWEDLRFSD 642
Query: 325 QRLTEAEILLSKWPQT----STSKGIIDPAVLSALYNDLNT-----VSAIQALHKLARES 375
+ L + + K T + DP + L +L +S + +L K RE+
Sbjct: 643 EILKQVREVYRKIRNTYRFLLGNLDDFDPKKDAVLPEELRELDRWILSRLNSLVKEVREA 702
Query: 376 TKNHDLLPIFNA 387
+N+D + A
Sbjct: 703 YENYDFHKVVRA 714
|
Length = 933 |
| >gnl|CDD|183390 PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 8e-05
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 268 NGFLNLEGRKMSKSNGNFITINELLE 293
+ +L LEG K SKS G I +++ LE
Sbjct: 325 SEYLTLEGGKFSKSRGWGIWVDDALE 350
|
Length = 556 |
| >gnl|CDD|30492 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 2e-04
Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 268 NGFLNLEGRKMSKSNGNFITINELLET 294
+GFL LEG+KMSKS GN + +ELLE
Sbjct: 324 HGFLTLEGQKMSKSRGNVVDPDELLEQ 350
|
Length = 558 |
| >gnl|CDD|178544 PLN02959, PLN02959, aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.003
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 268 NGFLNLEGRKMSKSNGNFITINELLET 294
NG L L KMSKS GNF+T+ + +E
Sbjct: 709 NGHLMLNSEKMSKSTGNFLTLRQAIEE 735
|
Length = 1084 |
| >gnl|CDD|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 6e-04
Identities = 55/303 (18%), Positives = 92/303 (30%), Gaps = 56/303 (18%)
Query: 33 PTVYDFAHIGNARPMIVFDVL--YRLLRYYY----------GEKCVTYVRNITDIDDKII 80
P H+G+A I+ D + Y+ +R Y G K I
Sbjct: 9 PYANGSLHLGHALTHIIADFIARYKRMRGYEVPFLPGWDTHGLPIELKAERKGGRKKKTI 68
Query: 81 ERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAP------THQPRATNHIPQMIY 134
+ + + + +D RL T +P + +
Sbjct: 69 WIEE-------FREDPKEFVEEMSGEHKEDFRRLGISYDWSDEYITTEPE---YSKAVEL 118
Query: 135 LIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPA---DF 191
+ + G Y + + + F + + + G VPE + A
Sbjct: 119 IFSRLYEKGLIYRGTHPVRITEQWFFDMPKFKEKLLKALRRGKIVPEHVKNRMEAWLESL 178
Query: 192 ILWKRSTPMEPGWESPWGRGRPGWHIEC-------SAMSSHYL--GKVF------DIHGG 236
+ W S WG P + S Y + F D H
Sbjct: 179 LDWAISRQR------YWGTPLPEDVFDVWFDSGIGPLGSLGYPEEKEWFKDSYPADWHLI 232
Query: 237 GLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLE-GRKMSKSNGNFITINELLETK 295
G D++ I N+ +H GF+ E G+KMSKS GN I ++++E
Sbjct: 233 GKDILRGWANFWITMLVALFGEIPPKNLLVH-GFVLDEGGQKMSKSKGNVIDPSDVVE-- 289
Query: 296 KFG 298
K+G
Sbjct: 290 KYG 292
|
Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function. Length = 312 |
Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
| Identity | Alignment graph | Length | Definition | Probability |
| Target | 461 | cysteinyl-tRNA synthetase [Candidatus Liberibacter asia | ||
| PRK00260 | 460 | cysS cysteinyl-tRNA synthetase; Validated | 100.0 | |
| COG0215 | 464 | CysS Cysteinyl-tRNA synthetase [Translation, ribosomal | 100.0 | |
| TIGR00435 | 660 | cysS cysteinyl-tRNA synthetase; InterPro: IPR002308 The | 100.0 | |
| KOG2007 | 586 | consensus | 100.0 | |
| TIGR03447 | 411 | mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deo | 100.0 | |
| PRK12418 | 384 | cysteinyl-tRNA synthetase; Provisional | 100.0 | |
| pfam01406 | 301 | tRNA-synt_1e tRNA synthetases class I (C) catalytic dom | 100.0 | |
| cd00672 | 213 | CysRS_core This is the catalytic core domain of cystein | 100.0 | |
| cd00814 | 319 | MetRS_core This is the catalytic core domain of methion | 100.0 | |
| cd00668 | 334 | Ile_Leu_Val_MetRS_core This is the catalytic core domai | 100.0 | |
| pfam09334 | 388 | tRNA-synt_1g tRNA synthetases class I (M). This family | 100.0 | |
| cd00812 | 376 | LeuRS_core This is the catalytic core domain of leucyl | 100.0 | |
| cd00817 | 363 | ValRS_core This is the catalytic core domain of valine | 99.95 | |
| cd00818 | 339 | IleRS_core This is the catalytic core domain of isoleuc | 99.93 | |
| cd00674 | 354 | LysRS_core_class_I This is the catalytic core domain of | 99.89 | |
| pfam01921 | 355 | tRNA-synt_1f tRNA synthetases class I (K). This family | 99.82 | |
| COG0525 | 877 | ValS Valyl-tRNA synthetase [Translation, ribosomal stru | 99.7 | |
| PRK12451 | 562 | arginyl-tRNA synthetase; Reviewed | 99.64 | |
| PRK01611 | 570 | argS arginyl-tRNA synthetase; Reviewed | 99.64 | |
| pfam00750 | 345 | tRNA-synt_1d tRNA synthetases class I (R). Other tRNA s | 99.56 | |
| COG0018 | 577 | ArgS Arginyl-tRNA synthetase [Translation, ribosomal st | 99.56 | |
| COG1384 | 521 | LysS Lysyl-tRNA synthetase (class I) [Translation, ribo | 99.29 | |
| PRK00750 | 513 | lysK lysyl-tRNA synthetase; Reviewed | 99.29 | |
| PRK04156 | 566 | gltX glutamyl-tRNA synthetase; Provisional | 99.24 | |
| cd00807 | 238 | Gln_GluRS_non_core Glutaminyl-tRNA synthetase (GlnRS) a | 99.21 | |
| cd00418 | 223 | GlxRS_core Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-t | 99.2 | |
| TIGR00422 | 970 | valS valyl-tRNA synthetase; InterPro: IPR002303 The ami | 99.16 | |
| KOG0432 | 995 | consensus | 99.16 | |
| PRK12558 | 461 | glutamyl-tRNA synthetase; Provisional | 99.08 | |
| PRK01406 | 467 | gltX glutamyl-tRNA synthetase; Reviewed | 99.07 | |
| COG0008 | 472 | GlnS Glutamyl- and glutaminyl-tRNA synthetases [Transla | 99.04 | |
| pfam00749 | 314 | tRNA-synt_1c tRNA synthetases class I (E and Q), cataly | 99.04 | |
| PRK05710 | 299 | glutamyl-Q tRNA(Asp) synthetase; Reviewed | 99.02 | |
| PRK12410 | 433 | glutamyl-tRNA synthetase; Provisional | 98.93 | |
| cd00808 | 239 | GluRS_core Descriminating Glutamyl-tRNA synthetase (Glu | 98.87 | |
| PRK00574 | 489 | gltX glutamyl-tRNA synthetase; Reviewed | 98.87 | |
| PRK05347 | 556 | glutaminyl-tRNA synthetase; Provisional | 98.74 | |
| TIGR00463 | 600 | gltX_arch glutamyl-tRNA synthetase; InterPro: IPR004526 | 98.71 | |
| TIGR00456 | 600 | argS arginyl-tRNA synthetase; InterPro: IPR001278 The a | 98.6 | |
| TIGR00464 | 513 | gltX_bact glutamyl-tRNA synthetase; InterPro: IPR004527 | 98.1 | |
| cd00395 | 274 | Tyr_Trp_RS_core Tyrosinyl-tRNA synthetase (TyrRS)/Trypt | 97.97 | |
| KOG1147 | 712 | consensus | 97.79 | |
| TIGR00467 | 539 | lysS_arch lysyl-tRNA synthetase; InterPro: IPR002904 Th | 97.78 | |
| PRK08560 | 333 | tyrosyl-tRNA synthetase; Validated | 97.52 | |
| KOG1149 | 524 | consensus | 96.72 | |
| cd00806 | 282 | TrpRS_core Tryptophanyl-tRNA synthetase (TrpRS) catalyt | 96.5 | |
| PRK12282 | 333 | tryptophanyl-tRNA synthetase II; Reviewed | 94.95 | |
| PRK12556 | 328 | tryptophanyl-tRNA synthetase; Provisional | 91.94 | |
| PRK11893 | 512 | methionyl-tRNA synthetase; Reviewed | 100.0 | |
| PRK12267 | 644 | methionyl-tRNA synthetase; Reviewed | 100.0 | |
| PRK00133 | 666 | metG methionyl-tRNA synthetase; Reviewed | 100.0 | |
| PRK12268 | 558 | methionyl-tRNA synthetase; Reviewed | 99.97 | |
| COG0143 | 558 | MetG Methionyl-tRNA synthetase [Translation, ribosomal | 99.93 | |
| TIGR00398 | 573 | metG methionyl-tRNA synthetase; InterPro: IPR002304 The | 99.89 | |
| KOG0436 | 578 | consensus | 99.78 | |
| KOG4426 | 656 | consensus | 96.63 | |
| cd07963 | 156 | Anticodon_Ia_Cys Anticodon-binding domain of cysteinyl | 99.94 | |
| PRK13208 | 809 | valS valyl-tRNA synthetase; Reviewed | 99.91 | |
| PRK05729 | 877 | valS valyl-tRNA synthetase; Reviewed | 99.84 | |
| PRK13804 | 966 | ileS isoleucyl-tRNA synthetase; Provisional | 99.83 | |
| PRK12300 | 888 | leuS leucyl-tRNA synthetase; Reviewed | 99.58 | |
| COG0495 | 814 | LeuS Leucyl-tRNA synthetase [Translation, ribosomal str | 99.41 | |
| COG0060 | 933 | IleS Isoleucyl-tRNA synthetase [Translation, ribosomal | 99.33 | |
| TIGR00392 | 938 | ileS isoleucyl-tRNA synthetase; InterPro: IPR002301 The | 99.33 | |
| PRK06039 | 1042 | ileS isoleucyl-tRNA synthetase; Reviewed | 98.4 | |
| PRK00390 | 822 | leuS leucyl-tRNA synthetase; Validated | 99.85 | |
| PRK05743 | 910 | ileS isoleucyl-tRNA synthetase; Reviewed | 99.81 | |
| PRK06039 | 1042 | ileS isoleucyl-tRNA synthetase; Reviewed | 99.52 | |
| TIGR00396 | 916 | leuS_bact leucyl-tRNA synthetase; InterPro: IPR002302 T | 99.07 | |
| COG0495 | 814 | LeuS Leucyl-tRNA synthetase [Translation, ribosomal str | 98.69 | |
| PRK12300 | 888 | leuS leucyl-tRNA synthetase; Reviewed | 98.17 | |
| KOG0435 | 876 | consensus | 98.06 | |
| COG0060 | 933 | IleS Isoleucyl-tRNA synthetase [Translation, ribosomal | 96.97 | |
| KOG1247 | 567 | consensus | 96.64 | |
| KOG0433 | 937 | consensus | 96.41 | |
| KOG1148 | 764 | consensus | 96.1 | |
| TIGR00392 | 938 | ileS isoleucyl-tRNA synthetase; InterPro: IPR002301 The | 96.06 | |
| TIGR00440 | 564 | glnS glutaminyl-tRNA synthetase; InterPro: IPR004514 Th | 95.98 | |
| PRK12285 | 369 | tryptophanyl-tRNA synthetase; Reviewed | 94.07 | |
| PRK12284 | 436 | tryptophanyl-tRNA synthetase; Reviewed | 93.4 | |
| KOG1195 | 567 | consensus | 91.24 | |
| pfam00133 | 606 | tRNA-synt_1 tRNA synthetases class I (I, L, M and V). O | 99.85 | |
| KOG0437 | 1080 | consensus | 98.87 | |
| KOG0433 | 937 | consensus | 98.55 | |
| KOG0434 | 1070 | consensus | 97.34 | |
| cd00805 | 268 | TyrRS_core Tyrosinyl-tRNA synthetase (TyrRS) catalytic | 96.92 | |
| cd00802 | 142 | class_I_aaRS_core Class I amino acyl-tRNA synthetase (a | 99.44 | |
| cd00671 | 267 | ArgRS_core This is the catalytic core domain of Arginyl | 98.44 | |
| PRK13354 | 405 | tyrosyl-tRNA synthetase; Provisional | 97.44 | |
| COG0180 | 314 | TrpS Tryptophanyl-tRNA synthetase [Translation, ribosom | 96.79 | |
| cd02156 | 147 | nt_trans nt_trans (nucleotidyl transferase) This superf | 96.58 | |
| PRK05912 | 402 | tyrosyl-tRNA synthetase; Validated | 94.95 | |
| TIGR00395 | 1109 | leuS_arch leucyl-tRNA synthetase; InterPro: IPR004493 T | 99.41 | |
| pfam09190 | 62 | DALR_2 DALR domain. This DALR domain is found in cystei | 98.35 | |
| smart00840 | 56 | DALR_2 This DALR domain is found in cysteinyl-tRNA-synt | 98.22 | |
| TIGR00396 | 916 | leuS_bact leucyl-tRNA synthetase; InterPro: IPR002302 T | 98.19 | |
| KOG0435 | 876 | consensus | 98.04 | |
| cd07955 | 81 | Anticodon_Ia_Cys_like Anticodon-binding domain of cyste | 97.56 | |
| cd00814 | 319 | MetRS_core This is the catalytic core domain of methion | 97.41 | |
| TIGR00422 | 970 | valS valyl-tRNA synthetase; InterPro: IPR002303 The ami | 96.85 | |
| KOG2007 | 586 | consensus | 96.72 | |
| COG0162 | 401 | TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal st | 95.15 | |
| pfam00579 | 291 | tRNA-synt_1b tRNA synthetases class I (W and Y). | 92.38 | |
| PRK12283 | 398 | tryptophanyl-tRNA synthetase; Reviewed | 93.59 | |
| TIGR00395 | 1109 | leuS_arch leucyl-tRNA synthetase; InterPro: IPR004493 T | 90.81 |
| >PRK00260 cysS cysteinyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=1306.15 Aligned_cols=436 Identities=48% Similarity=0.842 Sum_probs=411.2 Q ss_pred CCCEEEECCCCCEEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHH Q ss_conf 87418988898262233047984799961678888444111279999999999999707998457996055233888999 Q gi|254780573|r 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIER 82 (461) Q Consensus 3 ~~l~lyntlt~~~~~f~p~~~~~v~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~ 82 (461) T Consensus 1 M~l~lyntltr~ke~f~p~~~~~v~~Y~CGPTVYd~~HiG~~r~~v~~D~l~R~l~~~g~~--v~~v~NiTDidDKii~~ 78 (460) T PRK00260 1 MMLKIYNTLTRQKEEFKPLDPGKVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYRGYK--VTYVRNITDIDDKIIKR 78 (460) T ss_pred CEEEEEECCCCCEECCCCCCCCEEEEEECCCCCCCCCCHHCCCHHHHHHHHHHHHHHCCCC--EEEEEECCCCHHHHHHH T ss_conf 9178986688861012248999588996798488873200030899999999999964993--49998237541999999 Q ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHCCCC Q ss_conf 98708986448848999999999999987762685410001235677778999998741143201289287522002454 Q gi|254780573|r 83 ARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNY 162 (461) Q Consensus 83 a~~~~~~~~~~~~~~~~a~~~~~~f~~d~~~L~v~~p~~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~~~~Y 162 (461) T Consensus 79 a~~~~~~------~~~~~~~~~~~f~~d~~~L~i~~p~~~~r~t~~i~~~i~~i~~l~~~g~aY~~~~~vyFdv~~~~~Y 152 (460) T PRK00260 79 ANEEGES------IKELTERYIAAFHEDMDALGVLRPDIEPRATEHIPEIIELIERLIEKGHAYEADGDVYFDVRKFPDY 152 (460) T ss_pred HHHHCCC------HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCEEEECCCCCCCH T ss_conf 9981969------9999999999999999994899985224301479999999999985795288478799635555330 Q ss_pred CCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCC Q ss_conf 32246754666643210222210123512666337766631414677667643320477778752984148741356666 Q gi|254780573|r 163 GSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 (461) Q Consensus 163 G~Ls~~~~~~~~~g~r~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~F 242 (461) T Consensus 153 G~Ls~~~~~~~~~g~rv~~~~~K~~p~DFaLWK~~~~ge~~W~SPWG~GRPGWHIECSaM~~~~LG~~~DIH~GG~DL~F 232 (460) T PRK00260 153 GKLSGRNLDDLQAGARVEVAEEKRDPLDFVLWKAAKPGEPSWDSPWGKGRPGWHIECSAMSTKYLGETFDIHGGGSDLIF 232 (460) T ss_pred HHCCCCCCHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCC T ss_conf 30056530212115656766344785532212788888877769888879874226379999875997547624526778 Q ss_pred CCCHHHHHHHHHHCCCCCCHHHEECCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCC Q ss_conf 87513668888640875301210034325764202233233214089985025334557779999999842566432114 Q gi|254780573|r 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDF 322 (461) Q Consensus 243 PHHENEiAQs~a~~~~~~~a~yWlH~G~l~i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~lLsshYRspLdf 322 (461) T Consensus 233 PHHENEiAQs~a~~~-~~~a~yW~H~g~l~i~g~KMSKSlgN~iti~dll~-------~y~~~~lR~~lLs~hYR~pl~f 304 (460) T PRK00260 233 PHHENEIAQSEAATG-KPFANYWMHNGFVTVNGEKMSKSLGNFFTIRDLLK-------KYDPEVLRFFLLSAHYRSPLNF 304 (460) T ss_pred CCCCCHHHHHHHHHC-CCCCCEEEEEEEEEECCEEEECCCCCCCCHHHHHH-------HHCHHHHHHHHHHCCCCCCCCC T ss_conf 996109999988648-98652456510576367175035787001999998-------7077999999985468996677 Q ss_pred CHHHHHHHHHHHHHCCCCCCCCC---------CCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCH---------HHHHH Q ss_conf 50346877764321000013510---------0596776302110127999999999999751306---------79999 Q gi|254780573|r 323 TVQRLTEAEILLSKWPQTSTSKG---------IIDPAVLSALYNDLNTVSAIQALHKLARESTKNH---------DLLPI 384 (461) Q Consensus 323 S~e~L~~A~~~l~kl~~~~~~~~---------~~~~~f~~AL~DDLNTp~ALa~L~~lvk~~n~~~---------~~~~~ 384 (461) T Consensus 305 s~e~L~~a~~~l~rl~~~~~~~~~~~~~~~~~~~~~~F~~AL~DDLNTP~Ala~Lfelvk~iN~~l~~~~~~~~~~~~~~ 384 (460) T PRK00260 305 SEEALEEAKKALERLYNALRNLEPAVAPAGGEEFEERFIEAMDDDFNTPEALAVLFELAKEINRLLDAKDKEAAAALAAL 384 (460) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH T ss_conf 99999999999999999999755402553227899999998752278699999999999999987502578999999999 Q ss_pred HHHHHHHCCCCCCCC------CCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCEEEE Q ss_conf 999998717674320------00146789999999999999881798999999999998897999869988778604887 Q gi|254780573|r 385 FNASAHILGIEVCKE------HLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458 (461) Q Consensus 385 ~~~~~~iLGl~~~~~------~~~~~~~~~I~~Li~~R~~AR~~KDf~~AD~IRdeL~~~GI~ieDt~dG~~w~~~T~Wk 458 (461) T Consensus 385 l~~i~~ILGl~~~~~~~~~~~~~~~~~~~~I~~Li~~R~~AR~~KDf~~AD~IRdeL~~~GI~IeDt~dG------t~Wk 458 (460) T PRK00260 385 LRALADVLGLLQQDPEAFLQAAADELLDAEIEALIEERQEARKAKDFALADRIRDELKAAGIVLEDTPDG------TTWR 458 (460) T ss_pred HHHHHHHCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCC------CEEE T ss_conf 9999985548976635553146443479999999999999998379799999999999779699984998------1797 Q ss_pred EC Q ss_conf 24 Q gi|254780573|r 459 QK 460 (461) Q Consensus 459 ~k 460 (461) T Consensus 459 rK 460 (460) T PRK00260 459 RK 460 (460) T ss_pred EC T ss_conf 59 |
|
| >COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=1299.98 Aligned_cols=436 Identities=48% Similarity=0.822 Sum_probs=404.5 Q ss_pred CCEEEECCCCCEEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHH Q ss_conf 74189888982622330479847999616788884441112799999999999997079984579960552338889999 Q gi|254780573|r 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERA 83 (461) Q Consensus 4 ~l~lyntlt~~~~~f~p~~~~~v~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a 83 (461) T Consensus 1 ~l~iyNTltr~ke~F~P~~~~~V~mYvCGpTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~--V~yV~NiTDIDDKIi~rA 78 (464) T COG0215 1 MLKLYNTLTRQKEEFVPIDPGKVKMYVCGPTVYDYAHIGHARTYVVFDVLRRYLRYLGYK--VTYVRNITDIDDKIINRA 78 (464) T ss_pred CCEEEECCCCCEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEHHHHHHHHHHHHCCE--EEEEECCCCCCHHHHHHH T ss_conf 918985476540116578999168996188257764456676520299999999982970--799964666638999999 Q ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCEEECCHHCCCC Q ss_conf 87089864488489999999999999877626854100012356777789999987411432012-89287522002454 Q gi|254780573|r 84 RQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNY 162 (461) Q Consensus 84 ~~~~~~~~~~~~~~~~a~~~~~~f~~d~~~L~v~~p~~~pr~t~~i~~~i~~i~~L~~~g~aY~~-~g~VyFdv~~~~~Y 162 (461) T Consensus 79 ~~~g~~------~~ev~~~~i~~f~~D~~aL~v~~p~~~PraTe~I~~iI~~I~~Li~kG~AY~~~~G~VYFdv~~f~~Y 152 (464) T COG0215 79 REEGLS------IREVAERYIAAFFEDMDALNVLPPDIEPRATEHIDEIIEFIEKLIEKGYAYVADDGDVYFDVSKFKDY 152 (464) T ss_pred HHHCCC------HHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCHHHHHHHHHHHHHCCCEEEECCCCEEEECCCHHHH T ss_conf 982999------99999999999999999829999865574764799999999999977965884698289952430317 Q ss_pred CCCCCC-CHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCC Q ss_conf 322467-5466664321022221012351266633776663141467766764332047777875298414874135666 Q gi|254780573|r 163 GSFSRR-KIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLI 241 (461) Q Consensus 163 G~Ls~~-~~~~~~~g~r~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~ 241 (461) T Consensus 153 G~LS~~~~le~l~~gar~~~~~~Krnp~DFvLWK~sk~gEp~W~SPWG~GRPGWHIECSaM~~~~LG~~~DIHgGG~DLi 232 (464) T COG0215 153 GKLSGRDSLEELQAGARVEVDEEKRNPLDFVLWKAAKPGEPSWDSPWGKGRPGWHIECSAMSTKYLGETFDIHGGGSDLI 232 (464) T ss_pred HHHCCCCCHHHHHHCCCCCCCCCCCCCHHHEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEECCCCCCC T ss_conf 86528987667751354566545588001124425899998877998899994468899999987089751246850255 Q ss_pred CCCCHHHHHHHHHHCCCCCCHHHEECCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCC Q ss_conf 68751366888864087530121003432576420223323321408998502533455777999999984256643211 Q gi|254780573|r 242 FPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPID 321 (461) Q Consensus 242 FPHHENEiAQs~a~~~~~~~a~yWlH~G~l~i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~lLsshYRspLd 321 (461) T Consensus 233 FPHHENEiAQsea~~g~~~~a~yWmH~G~l~i~geKMSKSLGNfiti~d~l-------~~~~p~~lR~~lls~HYR~pl~ 305 (464) T COG0215 233 FPHHENEIAQSEAATGVKPFAKYWMHNGFLNIDGEKMSKSLGNFITVRDLL-------KKYDPEVLRLFLLSSHYRSPLD 305 (464) T ss_pred CCCCCCHHHHHHHHHCCCCCEEEEEECCEEEECCCCCCCCCCCEEEHHHHH-------HHCCHHHHHHHHHHHHHCCCCC T ss_conf 888630899987642997600586882645246727652357766799998-------6548799999999877577656 Q ss_pred CCHHHHHHHHHHHHHCCCCCCCC------------CCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC--------HHH Q ss_conf 45034687776432100001351------------0059677630211012799999999999975130--------679 Q gi|254780573|r 322 FTVQRLTEAEILLSKWPQTSTSK------------GIIDPAVLSALYNDLNTVSAIQALHKLARESTKN--------HDL 381 (461) Q Consensus 322 fS~e~L~~A~~~l~kl~~~~~~~------------~~~~~~f~~AL~DDLNTp~ALa~L~~lvk~~n~~--------~~~ 381 (461) T Consensus 306 fsee~L~~A~~~l~rl~~~~~~~~~~~~~~~~~~~~~~~~~f~~al~DDfnt~~al~~l~~l~~~~~~~~~~~~~~~~~~ 385 (464) T COG0215 306 FSEELLEEAKKALERLYNALRRLRDLAGDAELADLKEFEARFREALDDDFNTPKALAVLFELAKEINRLLEEGKSDAKAV 385 (464) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHH T ss_conf 68999999999999999999988740132221106789999999987225808999999999998765420242104899 Q ss_pred HHHHHHHHHHCCC-----CCCC-CCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCE Q ss_conf 9999999987176-----7432-000146789999999999999881798999999999998897999869988778604 Q gi|254780573|r 382 LPIFNASAHILGI-----EVCK-EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMT 455 (461) Q Consensus 382 ~~~~~~~~~iLGl-----~~~~-~~~~~~~~~~I~~Li~~R~~AR~~KDf~~AD~IRdeL~~~GI~ieDt~dG~~w~~~T 455 (461) T Consensus 386 ~~~~~~~~~~lg~~~l~~~~~~~~~~~~~~~~~i~~Li~~R~~aR~~K~~~~AD~iRd~L~~~Gi~leD~~~g------t 459 (464) T COG0215 386 LSALKALLAILGLKVLGLFPQSGAQEDESDDEEIEALIEERLEARKAKNWALADEIRDELLALGIILEDTPDG------T 459 (464) T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCEEEECCCC------E T ss_conf 9999999998184010345210112441109999999999999998427888999999999779599977997------2 Q ss_pred EEEEC Q ss_conf 88724 Q gi|254780573|r 456 RWKQK 460 (461) Q Consensus 456 ~Wk~k 460 (461) T Consensus 460 ~w~~~ 464 (464) T COG0215 460 TWRRK 464 (464) T ss_pred EEEEC T ss_conf 79749 |
|
| >TIGR00435 cysS cysteinyl-tRNA synthetase; InterPro: IPR002308 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=1263.27 Aligned_cols=436 Identities=44% Similarity=0.764 Sum_probs=396.2 Q ss_pred CEEEECCCCCEEEEEECCCC-EEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHH-HHCCCCCEEEEECCCCC------- Q ss_conf 41898889826223304798-4799961678888444111279999999999999-70799845799605523------- Q gi|254780573|r 5 IKIYNTLERKITEFQAIDPS-NIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLR-YYYGEKCVTYVRNITDI------- 75 (461) Q Consensus 5 l~lyntlt~~~~~f~p~~~~-~v~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~-~~~~~~~V~~v~niTDi------- 75 (461) T Consensus 1 l~lynTltR~K~~F~pl~~~~~V~~Y~CGpTVYd~~HiGhaR~~i~fD~~~R~L~d~~GY~--V~yV~NiTDIGhltGdl 78 (660) T TIGR00435 1 LKLYNTLTRQKEEFEPLVQGKKVKMYVCGPTVYDYAHIGHARTAIVFDVLRRYLEDYLGYE--VQYVQNITDIGHLTGDL 78 (660) T ss_pred CEEECCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCE--EEEEEEEEECCCCCCCC T ss_conf 9343144566352411248856679970731762103034663025788899998875886--78886431200001677 Q ss_pred ---CHHHHHHHHHCCCCCCCCCCHHHH----------------------------------------------------- Q ss_conf ---388899998708986448848999----------------------------------------------------- Q gi|254780573|r 76 ---DDKIIERARQEHPSIPINDAISII----------------------------------------------------- 99 (461) Q Consensus 76 ---dDkii~~a~~~~~~~~~~~~~~~~----------------------------------------------------- 99 (461) T Consensus 79 ddGDDKIIk~A~~~~~~------~~~~kendtkfnatvvdkvktalfqyinknftiqGseiktieefetWlsnadtetlk 152 (660) T TIGR00435 79 DDGDDKIIKRAREEGET------VEEVKENDTKFNATVVDKVKTALFQYINKNFTIQGSEIKTIEEFETWLSNADTETLK 152 (660) T ss_pred CCCCHHHHHHHHHCCCC------HHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCEECCCHHHHHHHHHHHHHCCCCCHHC T ss_conf 77504899998751564------788740122000256778899999987520011252000367777765203310100 Q ss_pred -------------------------------------------------------HHHHHHHHHH-----HHHHHCCCCC Q ss_conf -------------------------------------------------------9999999999-----8776268541 Q gi|254780573|r 100 -------------------------------------------------------TSKNTQQFVK-----DTTRLACLAP 119 (461) Q Consensus 100 -------------------------------------------------------a~~~~~~f~~-----d~~~L~v~~p 119 (461) T Consensus 153 lenPkfP~hvtavqnaiesitkGds~daevafekvkdvtvPlldkelGstisnPe~~~~i~aY~~qkfndD~~aLNv~~p 232 (660) T TIGR00435 153 LENPKFPMHVTAVQNAIESITKGDSMDAEVAFEKVKDVTVPLLDKELGSTISNPESERFIEAYFEQKFNDDLEALNVLPP 232 (660) T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 13788852167788888764236630256766644001021010111343256016889999986557888874287388 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCEEECCHHCC-----CCCCCC---CCCHHHHHHHHHCCCCCC------ Q ss_conf 000123567777899999874114320128-92875220024-----543224---675466664321022221------ Q gi|254780573|r 120 THQPRATNHIPQMIYLIQNIILHGHAYEAN-NEIIFDTSSIP-----NYGSFS---RRKIDEQKMGTRVPEKYH------ 184 (461) Q Consensus 120 ~~~pr~t~~i~~~i~~i~~L~~~g~aY~~~-g~VyFdv~~~~-----~YG~Ls---~~~~~~~~~g~r~~~~~~------ 184 (461) T Consensus 233 ~~~pr~te~id~iie~i~~L~~KgyAY~~~~GdVYF~v~~f~ksPnh~YG~Ls~Wn~~~~~~l~~g~~~~v~~~~P~Ga~ 312 (660) T TIGR00435 233 DLEPRVTEHIDEIIEFIEQLIEKGYAYVSDNGDVYFDVSKFKKSPNHDYGKLSGWNKQSLDELEAGARVRVDEAKPDGAK 312 (660) T ss_pred CCEEEECCCCCHHHHHHHHHHHCCCEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCC T ss_conf 40166311243147899999868920530688646531677888888764326755554466625786455235887533 Q ss_pred CCCCCCEEEEECCCCC---CCEEECCCCCCCCCCCCHHHHHHHHHCC-----CCEEEEEECCCCCCCCCHHHHHHHHHHC Q ss_conf 0123512666337766---6314146776676433204777787529-----8414874135666687513668888640 Q gi|254780573|r 185 KKNPADFILWKRSTPM---EPGWESPWGRGRPGWHIECSAMSSHYLG-----KVFDIHGGGLDLIFPHHENEIAQSCCAD 256 (461) Q Consensus 185 K~~p~DFaLWK~~~~~---e~~w~spwG~GRPGWHiECsam~~~~lg-----~~~DIH~GG~DL~FPHHENEiAQs~a~~ 256 (461) T Consensus 313 Kr~~~DFvLWK~~k~g~~~E~~W~SPWG~GRPGWHiECS~M~~~~LgltntP~~~DIH~GG~DL~FPHHENE~Aqs~a~~ 392 (660) T TIGR00435 313 KRNKLDFVLWKSAKEGKDQEPKWDSPWGKGRPGWHIECSAMVDKYLGLTNTPDQIDIHGGGVDLIFPHHENEIAQSEALF 392 (660) T ss_pred CCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHH T ss_conf 56776502220067887777431777888888158999999997513567865430134887788878778999999872 Q ss_pred CCCCCHHHEECCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCC-CCCHHHHHHHHHCCCCCCCCCCCHHHHHHHH---H Q ss_conf 87530121003432576420223323321408998502533455-7779999999842566432114503468777---6 Q gi|254780573|r 257 RIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGR-SWPAPVIRLAMLMTHYREPIDFTVQRLTEAE---I 332 (461) Q Consensus 257 ~~~~~a~yWlH~G~l~i~geKMSKSlGN~iti~dlL~~~~~~~k-~y~p~viR~~lLsshYRspLdfS~e~L~~A~---~ 332 (461) T Consensus 393 gn~~~~~yW~H~G~~~id~eKMSKSLgNF~~v~D~L-------~q~~d~~~lR~~~l~~HYr~pLdf~e~~l~~aksfe~ 465 (660) T TIGR00435 393 GNKQLAKYWLHNGFLMIDNEKMSKSLGNFITVRDVL-------KQNYDPEVLRYLLLSVHYRSPLDFSEELLEAAKSFEN 465 (660) T ss_pred CCCCEEEEEEECCEEEECCCCCCHHHHHHHHHHHHH-------HCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH T ss_conf 898568999851778976721651555688888687-------4276899999998765531456747889999988999 Q ss_pred HHHHCCCCCCC---------------------CCCCCHHHHH-------HCCCHHHHHHHHHHHHHHHHHHCCCHH---- Q ss_conf 43210000135---------------------1005967763-------021101279999999999997513067---- Q gi|254780573|r 333 LLSKWPQTSTS---------------------KGIIDPAVLS-------ALYNDLNTVSAIQALHKLARESTKNHD---- 380 (461) Q Consensus 333 ~l~kl~~~~~~---------------------~~~~~~~f~~-------AL~DDLNTp~ALa~L~~lvk~~n~~~~---- 380 (461) T Consensus 466 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~Eseskvhsa~~dDlN~a~Al~vL~el~~~~N~~~~l~~~ 545 (660) T TIGR00435 466 ALERLYKALRNLDTDLAYSKEFGENKDPKNVDEKEFEAAFEESESKVHSAMDDDLNTANALAVLFELAKSINKKLDLTEV 545 (660) T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCC T ss_conf 99999999998753103422234243566422565786643203577888750578068999999999984001576512 Q ss_pred -------HHHHHHH----HHHHC---CCCCCC------CCC--CCC-CHHHHHHHHHH------------HHHHHHCCC- Q ss_conf -------9999999----99871---767432------000--146-78999999999------------999988179- Q gi|254780573|r 381 -------LLPIFNA----SAHIL---GIEVCK------EHL--NKN-ISIAIEKLVQE------------RLILLKMKK- 424 (461) Q Consensus 381 -------~~~~~~~----~~~iL---Gl~~~~------~~~--~~~-~~~~I~~Li~~------------R~~AR~~KD- 424 (461) T Consensus 546 ~~~~~~~~~~~l~~L~~~l~~~~rii~~~~~~dnlGWa~~~~~nd~l~~~~ie~li~~yvkClstfrddvR~~Ark~k~P 625 (660) T TIGR00435 546 SKADAALLIEALIELESVLGLLLRIIGLPSKPDNLGWAVQAGSNDDLEDGEIEALIEEYVKCLSTFRDDVRSEARKEKDP 625 (660) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH T ss_conf 47789999999999999999999985488775421011001224674145799999999999875678999999851493 Q ss_pred ---HHHHHHHH-HHHHHCCCEEEECCCCCCCCCCEEEEEC Q ss_conf ---89999999-9999889799986998877860488724 Q gi|254780573|r 425 ---FSSADYIR-KQLESKGFILEDYKNPDNGQRMTRWKQK 460 (461) Q Consensus 425 ---f~~AD~IR-deL~~~GI~ieDt~dG~~w~~~T~Wk~k 460 (461) T Consensus 626 kef~~~AD~iRnd~L~~~gi~L~D~p~G~-----T~w~r~ 660 (660) T TIGR00435 626 KEFFAKADEIRNDELAKKGIVLVDTPQGL-----TRWRRG 660 (660) T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCCCC-----EEEEEC T ss_conf 58999977888999985893686278874-----376209 |
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm. |
| >KOG2007 consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=1091.71 Aligned_cols=437 Identities=38% Similarity=0.648 Sum_probs=371.1 Q ss_pred CCCCCEEEECCCCCEEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHH-HHCCCCCEEEEECCCCCCHHH Q ss_conf 9887418988898262233047984799961678888444111279999999999999-707998457996055233888 Q gi|254780573|r 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLR-YYYGEKCVTYVRNITDIDDKI 79 (461) Q Consensus 1 ~~~~l~lyntlt~~~~~f~p~~~~~v~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~-~~~~~~~V~~v~niTDidDki 79 (461) T Consensus 31 ~~~~L~lYNslTr~Ke~fip~~~~~v~wY~CGpTvYD~SHmGHArsYVsfDIlrRiL~dyfgy~--V~~vmNiTDVDDKI 108 (586) T KOG2007 31 QPTELKLYNSLTRQKEVFIPNNGNKVTWYICGPTVYDSSHMGHARSYVSFDILRRILRDYFGYD--VTFVMNITDVDDKI 108 (586) T ss_pred CCCEEEEEECCCCCCCEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC--EEEEECCCCHHHHH T ss_conf 9874799622453330133078885789970680134122101466622999999999972863--69994355204899 Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHC Q ss_conf 99998708986448848999999999999987762685410001235677778999998741143201289287522002 Q gi|254780573|r 80 IERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI 159 (461) Q Consensus 80 i~~a~~~~~~~~~~~~~~~~a~~~~~~f~~d~~~L~v~~p~~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~~ 159 (461) T Consensus 109 I~RAr~~~m~e~-~~~l~~~F~~~e~eF~~DM~~LnvLpPtv~tRVSeyvp~II~fIqkIIdnG~aY~~dGsVYFdv~kf 187 (586) T KOG2007 109 IKRARKEEMGEK-PLSLSERFCYYEEEFLQDMAALNVLPPTVQTRVSEYVPQIIKFIQKIIDNGYAYAVDGSVYFDVDKF 187 (586) T ss_pred HHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCHHHHHHHHHHHHHCCCEEEECCCEEEECCCC T ss_conf 987655230234-1218998888899999899980889985301454244789999999984785365278089864446 Q ss_pred C-CCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECC Q ss_conf 4-543224675466664321022221012351266633776663141467766764332047777875298414874135 Q gi|254780573|r 160 P-NYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGL 238 (461) Q Consensus 160 ~-~YG~Ls~~~~~~~~~g~r~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~ 238 (461) T Consensus 188 ~~~YgKL~G~~-~~~~~gEg~l~ds~KR~p~DFALWKAsK~gEP~WeSPWG~GRPGWHIECSaMas~~lG~~lDIH~GG~ 266 (586) T KOG2007 188 PHSYGKLVGQR-KNLQEGEGVLSDSRKRSPADFALWKASKPGEPSWESPWGKGRPGWHIECSAMASAILGSQLDIHGGGI 266 (586) T ss_pred CCHHHHHCCCH-HHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHCCCCCEECCCC T ss_conf 54135431715-32346767544346788024566640489998887988899997456407777776265542016850 Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCHHHEECCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCC Q ss_conf 66668751366888864087530121003432576420223323321408998502533455777999999984256643 Q gi|254780573|r 239 DLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYRE 318 (461) Q Consensus 239 DL~FPHHENEiAQs~a~~~~~~~a~yWlH~G~l~i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~lLsshYRs 318 (461) T Consensus 267 DL~FPHHeNEiAQ~eA~~~~~~wVnYflHtGhL~i~g~KMSKSLkNFiTIke~L-------k~~sp~qLRl~fl~~~wr~ 339 (586) T KOG2007 267 DLAFPHHENEIAQSEAAFDDSQWVNYFLHTGHLTINGEKMSKSLKNFITIKEAL-------KKYSPRQLRLAFLLHQWRS 339 (586) T ss_pred CCCCCCCCCHHHHHHHHHCCCCCCEEEEECCEEEECCCHHHHHHCCCEEHHHHH-------HHCCHHHHHHHHHHHHHCC T ss_conf 433787520888888876387551257875736651110433320414399999-------7639899999999877567 Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCC------------------------CCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHH Q ss_conf 211450346877764321000013------------------------51005967763021101279999999999997 Q gi|254780573|r 319 PIDFTVQRLTEAEILLSKWPQTST------------------------SKGIIDPAVLSALYNDLNTVSAIQALHKLARE 374 (461) Q Consensus 319 pLdfS~e~L~~A~~~l~kl~~~~~------------------------~~~~~~~~f~~AL~DDLNTp~ALa~L~~lvk~ 374 (461) T Consensus 340 ~ldYs~s~m~~a~q~e~~~~~ff~~~~al~~~~~~~~~~~~~e~~l~~~~~~t~~~vh~al~d~~dT~~v~~~~~~lvs~ 419 (586) T KOG2007 340 PLDYSDSTMEQALQLEKSLNNFFLDVKALLRGAKPFEKLSEKEAELLEDFGKTQTAVHAALCDNFDTPRVMEAIRELVSQ 419 (586) T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH T ss_conf 67843889999999999999999999999825420210385899999860037899999987424518899999998734 Q ss_pred HCCC-------------HHHHHHHHHHHHHCCCCCCCCCC---CCCCHH------------------------------- Q ss_conf 5130-------------67999999999871767432000---146789------------------------------- Q gi|254780573|r 375 STKN-------------HDLLPIFNASAHILGIEVCKEHL---NKNISI------------------------------- 407 (461) Q Consensus 375 ~n~~-------------~~~~~~~~~~~~iLGl~~~~~~~---~~~~~~------------------------------- 407 (461) T Consensus 420 ~N~~i~~~~~~~~~~~L~~I~~yIt~~l~ifG~~e~~g~q~~~e~~~m~~v~~L~~fr~~vRe~a~~~~~~~iL~l~d~l 499 (586) T KOG2007 420 GNAYIRESGERPNSALLKAIASYITKLLKIFGLSEGKGQQYVLEATVMPYVQSLSEFREKVREVAREKKVPEILELCDTL 499 (586) T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH T ss_conf 33888873145425899999999999999807774233321001540089999999999999999850567899886788 Q ss_pred ---------------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCC Q ss_conf ---------------------------99999999999988179899999999999889799986998 Q gi|254780573|r 408 ---------------------------AIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNP 448 (461) Q Consensus 408 ---------------------------~I~~Li~~R~~AR~~KDf~~AD~IRdeL~~~GI~ieDt~dG 448 (461) T Consensus 500 R~~~l~~~g~~led~~g~~lvk~v~~e~~l~~~eek~~ae~~K~~~k~d~~~~~~~~~~~a~~~i~p~ 567 (586) T KOG2007 500 RDSDLLELGVRLEDRKGSTLVKAVDREELLQEREEKTSAEKNKDKEKSDRIREELAAKGIALMKIPPE 567 (586) T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH T ss_conf 87668874068773772078987606889898888767998777777899999998767776149846 |
|
| >TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=1124.28 Aligned_cols=380 Identities=32% Similarity=0.572 Sum_probs=349.3 Q ss_pred CCCCCEEEECCCCCEEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHH Q ss_conf 98874189888982622330479847999616788884441112799999999999997079984579960552338889 Q gi|254780573|r 1 MKKKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKII 80 (461) Q Consensus 1 ~~~~l~lyntlt~~~~~f~p~~~~~v~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii 80 (461) T Consensus 14 ~~p~lklyNTltr~ke~f~P--~~~v~mYvCGpTVYd~~HiGhaR~~v~fD~l~R~L~~~G~~--V~~v~NiTDiDDKii 89 (411) T TIGR03447 14 TGPPLRLFDTADGQVRPVEP--GPEAGMYVCGITPYDATHLGHAATYLTFDLVNRVWRDAGHR--VHYVQNVTDVDDPLF 89 (411) T ss_pred CCCCEEEEECCCCCEEECCC--CCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC--EEEEECCCCCCHHHH T ss_conf 99970788889886564668--98368996588478888622341689999999999983985--589961465425999 Q ss_pred HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC----CEEECC Q ss_conf 9998708986448848999999999999987762685410001235677778999998741143201289----287522 Q gi|254780573|r 81 ERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANN----EIIFDT 156 (461) Q Consensus 81 ~~a~~~~~~~~~~~~~~~~a~~~~~~f~~d~~~L~v~~p~~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g----~VyFdv 156 (461) T Consensus 90 ~~A~~~g~~------~~ela~~y~~~f~~d~~~Lni~~p~~~praTe~I~~ii~~I~~Li~kG~AY~~~~~~~gdVYFdv 163 (411) T TIGR03447 90 ERAERDGVD------WRELGTSQIDLFREDMEALRVLPPRDYIGAVESIDEVIEMVEKLLAAGAAYEVEGPEYPDVYFSI 163 (411) T ss_pred HHHHHHCCC------HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEE T ss_conf 999882989------99999999999999999749999987767434799999999999868967982798777579872 Q ss_pred HHCCCCCCCCCCCHHHHHH---HHHCC-CCCCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCEE Q ss_conf 0024543224675466664---32102-2221012351266633776663141467766764332047777875298414 Q gi|254780573|r 157 SSIPNYGSFSRRKIDEQKM---GTRVP-EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFD 232 (461) Q Consensus 157 ~~~~~YG~Ls~~~~~~~~~---g~r~~-~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~D 232 (461) T Consensus 164 ~~~~~yG~Ls~~~~~~~~~~~~~~~~~~~~~~Kr~p~DFaLWK~~k~gep~W~SPWG~GRPGWHIECSaMs~~~LG~~~D 243 (411) T TIGR03447 164 EATEQFGYESGYDRATMLELFAERGGDPDRPGKRDPLDALLWRAAREGEPSWDSPFGPGRPGWHIECSAIATNRLGAGFD 243 (411) T ss_pred CCHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEE T ss_conf 54011065225799999877511147742002467356777147888888766998886883779999999987599757 Q ss_pred EEEECCCCCCCCCHHHHHHHHHHCCCCCCHHHEECCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHH Q ss_conf 87413566668751366888864087530121003432576420223323321408998502533455777999999984 Q gi|254780573|r 233 IHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAML 312 (461) Q Consensus 233 IH~GG~DL~FPHHENEiAQs~a~~~~~~~a~yWlH~G~l~i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~lL 312 (461) T Consensus 244 IHgGG~DL~FPHHENEiAQsea~~g~~~~a~yWmH~g~l~~~geKMSKSlGN~~ti~dl~~------~g~~p~~iR~~lL 317 (411) T TIGR03447 244 IQGGGSDLIFPHHEFSAAHAEAATGVRRMARHYVHAGMIGLDGEKMSKSLGNLVFVSKLRA------AGVDPAAIRLGLL 317 (411) T ss_pred EECCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHECCEEEECCEECCCCCCCEEEHHHHHH------CCCCHHHHHHHHH T ss_conf 8788603578885309999998668873766765300231287055666887257999986------4998999999997 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC-----CCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHH-----HH Q ss_conf 256643211450346877764321000013510-----05967763021101279999999999997513067-----99 Q gi|254780573|r 313 MTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG-----IIDPAVLSALYNDLNTVSAIQALHKLARESTKNHD-----LL 382 (461) Q Consensus 313 sshYRspLdfS~e~L~~A~~~l~kl~~~~~~~~-----~~~~~f~~AL~DDLNTp~ALa~L~~lvk~~n~~~~-----~~ 382 (461) T Consensus 318 ~~HYRspl~fs~~~L~~A~~~l~r~~~a~~~~~~~~~~~~~~~~~~Al~DDlNTp~Ala~l~~~~~~~n~~~~~d~~~~~ 397 (411) T TIGR03447 318 AGHYRQDRDWTDAVLAEAEARLARWRAALAATDAPDATDLIARLRQHLANDLDTPAALAAVDNWAAAALSSGGSDSEAPA 397 (411) T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHH T ss_conf 14489976889899999999999999987266775226799999999860167299999999999999843698645499 Q ss_pred HHHHHHHHHCCCCC Q ss_conf 99999998717674 Q gi|254780573|r 383 PIFNASAHILGIEV 396 (461) Q Consensus 383 ~~~~~~~~iLGl~~ 396 (461) T Consensus 398 ~~a~~~da~lGv~L 411 (411) T TIGR03447 398 LVATAVDALLGVRL 411 (411) T ss_pred HHHHHHHHHCCCCC T ss_conf 99999998638769 |
Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione. |
| >PRK12418 cysteinyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=1099.32 Aligned_cols=365 Identities=34% Similarity=0.596 Sum_probs=337.5 Q ss_pred EEECCCC-EEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCH Q ss_conf 3304798-479996167888844411127999999999999970799845799605523388899998708986448848 Q gi|254780573|r 18 FQAIDPS-NIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAI 96 (461) Q Consensus 18 f~p~~~~-~v~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~ 96 (461) T Consensus 1 ~~P~~Pg~~V~mY~CGPTVYd~~HiGhaRt~v~fD~l~R~L~~~gy~--V~~v~NiTDVDDKii~~A~~~g~~------~ 72 (384) T PRK12418 1 VRPVAPGGTATMYVCGITPYDATHLGHAATYLAFDLVQRVWLDAGHD--VHYVQNVTDVDDPLLERAARDGVD------W 72 (384) T ss_pred CCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC--EEEEEECCCCCHHHHHHHHHHCCC------H T ss_conf 98889999689996688688885423351689999999999980996--499981050638999999985939------9 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC----CCCEEECCHHCCCCCCCCCCCHHH Q ss_conf 9999999999999877626854100012356777789999987411432012----892875220024543224675466 Q gi|254780573|r 97 SIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEA----NNEIIFDTSSIPNYGSFSRRKIDE 172 (461) Q Consensus 97 ~~~a~~~~~~f~~d~~~L~v~~p~~~pr~t~~i~~~i~~i~~L~~~g~aY~~----~g~VyFdv~~~~~YG~Ls~~~~~~ 172 (461) T Consensus 73 ~ela~~~~~~f~~d~~~Lnv~~p~~~praTe~I~~ii~~I~~Li~~G~AY~~~~~~~G~VYFdv~~~~~YG~ls~~~~~~ 152 (384) T PRK12418 73 RDLAAREIALFREDMAALRVLPPRDYVGAVESIPEVVELVEKLLASGAAYVVDDPEYGDVYFSVDATPQFGYESGYDRET 152 (384) T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEEEEECCHHHHCCCCCCCHHH T ss_conf 99999999999999998299999500321137999999999999679557756888886899952422114501599899 Q ss_pred HHHH--HHC-C-CCCCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCHHH Q ss_conf 6643--210-2-22210123512666337766631414677667643320477778752984148741356666875136 Q gi|254780573|r 173 QKMG--TRV-P-EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENE 248 (461) Q Consensus 173 ~~~g--~r~-~-~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~FPHHENE 248 (461) T Consensus 153 ~~~~~~e~~~~~~~~~Kr~p~DFaLWK~~~~gEp~W~SPWG~GRPGWHIECSaMs~~~LG~~~DIHgGG~DL~FPHHENE 232 (384) T PRK12418 153 MLELFAERGGDPDRPGKRDPLDALLWRAARPGEPSWPSPFGPGRPGWHIECSAIALNRLGSGFDIQGGGSDLIFPHHEFS 232 (384) T ss_pred HHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHH T ss_conf 98775331577543357886660355757777888769988808843056589999875997678468625658883549 Q ss_pred HHHHHHHCCCCCCHHHEECCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHH Q ss_conf 68888640875301210034325764202233233214089985025334557779999999842566432114503468 Q gi|254780573|r 249 IAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLT 328 (461) Q Consensus 249 iAQs~a~~~~~~~a~yWlH~G~l~i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~lLsshYRspLdfS~e~L~ 328 (461) T Consensus 233 iAQsea~~g~~~~a~yW~H~g~l~~~geKMSKSlGN~i~i~dl~~------~g~~p~~~R~~lL~~hYR~~l~fs~~~l~ 306 (384) T PRK12418 233 AAHAEAATGERRFARHYVHAGMIGLDGEKMSKSRGNLVFVSRLRA------AGVDPAAIRLALLAGHYRSDREWTDAVLA 306 (384) T ss_pred HHHHHHHHCCCHHHHHHHHHCEEEECCEECCCCCCCEEEHHHHHH------CCCCHHHHHHHHHCCCCCCCCCCCHHHHH T ss_conf 999998658974878886004266888674566887146999986------38987999999970567997688999999 Q ss_pred HHHHHHHHCCCCCCCC-----CCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCH-----HHHHHHHHHHHHCCCCC Q ss_conf 7776432100001351-----00596776302110127999999999999751306-----79999999998717674 Q gi|254780573|r 329 EAEILLSKWPQTSTSK-----GIIDPAVLSALYNDLNTVSAIQALHKLARESTKNH-----DLLPIFNASAHILGIEV 396 (461) Q Consensus 329 ~A~~~l~kl~~~~~~~-----~~~~~~f~~AL~DDLNTp~ALa~L~~lvk~~n~~~-----~~~~~~~~~~~iLGl~~ 396 (461) T Consensus 307 ~A~~~l~r~~~a~~~~~~~~~~~~~~~~~~al~DDlNTP~Ala~l~~l~~~~n~~~~~d~~~~~~~~~a~~~~LG~~l 384 (384) T PRK12418 307 EAEARLARWRAATALPAGPDAADVVARVREYLADDLDTPGALAAVDGWATDALEYGGHDAAAPALVATAVDALLGVAL 384 (384) T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCC T ss_conf 999999999998716678866889999999987426558999999999999973268881149999999998618769 |
|
| >pfam01406 tRNA-synt_1e tRNA synthetases class I (C) catalytic domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=771.39 Aligned_cols=300 Identities=48% Similarity=0.864 Sum_probs=290.9 Q ss_pred EEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCH Q ss_conf 23304798479996167888844411127999999999999970799845799605523388899998708986448848 Q gi|254780573|r 17 EFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAI 96 (461) Q Consensus 17 ~f~p~~~~~v~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~ 96 (461) T Consensus 1 ~f~p~~~~~v~~YicgPt~Y~~pHIGHa~t~I~~Dvi~R~~r~~G~~--V~fv~g~ddhgdKI~~~A~~~g~~------p 72 (301) T pfam01406 1 FFVPLHQGKVNMYVCGPTVYDDSHIGHARSAVAFDVLRRYLQALGYD--VQFVQNFTDIDDKIIKRAQQQGES------F 72 (301) T ss_pred CCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC--EEEEECCCCCHHHHHHHHHHHCCC------H T ss_conf 95588799378997899068997522336899999999999974994--699967786317999999980986------5 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCEEECCHHCCCCCCCCCCCHHHHHH Q ss_conf 9999999999999877626854100012356777789999987411432012-892875220024543224675466664 Q gi|254780573|r 97 SIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEA-NNEIIFDTSSIPNYGSFSRRKIDEQKM 175 (461) Q Consensus 97 ~~~a~~~~~~f~~d~~~L~v~~p~~~pr~t~~i~~~i~~i~~L~~~g~aY~~-~g~VyFdv~~~~~YG~Ls~~~~~~~~~ 175 (461) T Consensus 73 ~e~~d~~~~~F~~~~~~L~I~~~d~~~rtTehi~~v~~~i~~L~~kG~~Y~~~~~~~Yf~~~~~~~yg~l~~~~~~~~~~ 152 (301) T pfam01406 73 RELAARFITAYTKDMDALNVLPPDLEPRVTEHIDEIIEFIERLIKKGYAYVSDNGDVYFDVSSFPDYGKLSGQNLEQLEA 152 (301) T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEECCCCCEEEEECCCCCCCCCCCCCHHHHHC T ss_conf 37999999999988998498289868775435799999999999779768726998899666746544046435777752 Q ss_pred HHHCCCCCCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHH Q ss_conf 32102222101235126663377666314146776676433204777787529841487413566668751366888864 Q gi|254780573|r 176 GTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCA 255 (461) Q Consensus 176 g~r~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~FPHHENEiAQs~a~ 255 (461) T Consensus 153 ~~~~~~~~~k~~~~df~Lwk~~~~~~~~~~~pwg~~~PgWhie~~~~~~~~~g~~~DiH~~G~Di~~pH~~~~~A~~~a~ 232 (301) T pfam01406 153 GARGEVGEGKRDPLDFALWKASKEGEPSWDSPWGKGRPGWHIECSAMARKYLGSQIDIHGGGVDLKFPHHENEIAQSEAA 232 (301) T ss_pred CCCCCCCCCCCCCCHHHEECCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHCCCCCCEECCCEEECCCCCHHHHHHHHHH T ss_conf 57766443325803533211456678775577778989754665067787418987330276510135524199999985 Q ss_pred CCCCCCHHHEECCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHH Q ss_conf 08753012100343257642022332332140899850253345577799999998425664321145034687776 Q gi|254780573|r 256 DRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEI 332 (461) Q Consensus 256 ~~~~~~a~yWlH~G~l~i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~lLsshYRspLdfS~e~L~~A~~ 332 (461) T Consensus 233 ~~-~~~~~~~~h~G~l~~~G~KMSKSlGNvv~~~dl~~-------~~g~d~~Ryfll~~~y~~~~~fs~~~l~~a~n 301 (301) T pfam01406 233 FD-QQLAKYWLHNGHLMIEGEKMSKSLGNFLTIRDVLK-------RYDPRILRYFLLSVHYRSPLDFSEELLEQAKN 301 (301) T ss_pred HC-CCCCEEEEEEEEEEECCEECCCCCCCCCCHHHHHH-------HCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHC T ss_conf 19-99514999852798788386664787377999987-------68999999999846589987879999997239 |
This family includes only cysteinyl tRNA synthetases. |
| >cd00672 CysRS_core This is the catalytic core domain of cysteinyl tRNA synthetase (CysRS) | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=728.40 Aligned_cols=213 Identities=56% Similarity=0.963 Sum_probs=208.9 Q ss_pred EEEECCCCCEEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHH Q ss_conf 18988898262233047984799961678888444111279999999999999707998457996055233888999987 Q gi|254780573|r 6 KIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQ 85 (461) Q Consensus 6 ~lyntlt~~~~~f~p~~~~~v~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~ 85 (461) T Consensus 1 klyNTltr~ke~f~P~~~~~V~~Y~CGPTVYd~~HiGhaR~~v~~D~l~R~L~~~gy~--V~~V~NITDIDDKII~~A~~ 78 (213) T cd00672 1 RLYNTLTRQKEEFVPLNPGLVRMYVCGPTVYDYAHIGHARTYVVFDVLRRYLEDLGYK--VRYVQNITDIDDKIIKRARE 78 (213) T ss_pred CCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC--EEEEEEECCCCHHHHHHHHH T ss_conf 9731798864320338899788997899688998765342576899999999963993--58999726751899999998 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHCCCCCCC Q ss_conf 08986448848999999999999987762685410001235677778999998741143201289287522002454322 Q gi|254780573|r 86 EHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSF 165 (461) Q Consensus 86 ~~~~~~~~~~~~~~a~~~~~~f~~d~~~L~v~~p~~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~~~~YG~L 165 (461) T Consensus 79 ~~~~------~~ela~~y~~~f~~d~~~Lni~~p~~~Pra---------------------------------------- 112 (213) T cd00672 79 EGLS------IKEVAEYYTAEFFEDMKALNVLPPDVYPRV---------------------------------------- 112 (213) T ss_pred CCCC------HHHHHHHHHHHHHHHHHHHCCCCCCCCCCE---------------------------------------- T ss_conf 3999------999999999999999998289999813545---------------------------------------- Q ss_pred CCCCHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCC Q ss_conf 46754666643210222210123512666337766631414677667643320477778752984148741356666875 Q gi|254780573|r 166 SRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHH 245 (461) Q Consensus 166 s~~~~~~~~~g~r~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~FPHH 245 (461) T Consensus 113 -------------------------------------------------WHiECsaM~~~~lg~~~DIH~GG~DL~FPHH 143 (213) T cd00672 113 -------------------------------------------------WHIECSAMSMKYLGETFDIHGGGVDLIFPHH 143 (213) T ss_pred -------------------------------------------------EEEECHHHHHHHHCCCEEEECCCCCCCCCCC T ss_conf -------------------------------------------------2014599989882896256347635658997 Q ss_pred HHHHHHHHHHCCCCCCHHHEECCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCC Q ss_conf 136688886408753012100343257642022332332140899850253345577799999998425664321145 Q gi|254780573|r 246 ENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFT 323 (461) Q Consensus 246 ENEiAQs~a~~~~~~~a~yWlH~G~l~i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~lLsshYRspLdfS 323 (461) T Consensus 144 eNE~AQs~a~~~-~~~a~~W~H~g~l~~~g~KMSKSlgN~~~i~dll-------~~~~~~~~R~~lls~hYR~~l~fs 213 (213) T cd00672 144 ENEIAQSEAAFG-KPFARYWLHTGHLTIDGEKMSKSLGNFITVRDAL-------KKYDPEVLRLALLSSHYRSPLDYS 213 (213) T ss_pred CCHHHHHHHHHC-CCCCCEEEEHHHHHHCCCEECCCCCCEEEHHHHH-------HCCCHHHHHHHHHHCCCCCCCCCC T ss_conf 049999888658-9960100034578727564034578752699998-------439999999999827378987899 |
This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. |
| >cd00814 MetRS_core This is the catalytic core domain of methionine tRNA synthetase (MetRS) | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=449.30 Aligned_cols=271 Identities=23% Similarity=0.238 Sum_probs=209.5 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 67888844411127999999999999970799845799605523388899998708986448848999999999999987 Q gi|254780573|r 32 GPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDT 111 (461) Q Consensus 32 GpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~~~~f~~d~ 111 (461) T Consensus 8 ~Ptv~g~lHiGHar~~v~~Dil~R~lr~~G~~--V~~vt~~Dd~~~kIi~kA~~~g~~------~~el~~~y~~~~~~~~ 79 (319) T cd00814 8 LPYVNGVPHLGHLYGTVLADVFARYQRLRGYD--VLFVTGTDEHGTKIEQKAEEEGVT------PQELCDKYHEIFKELF 79 (319) T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC--EEEECCCCCCCHHHHHHHHHCCCC------HHHHHHHHHHHHHHHH T ss_conf 98788985533068899999999999965995--699687778708999999983998------7999999999999999 Q ss_pred HHHCCCCCCHHHHHHH--HHHHHHHHHHHHHHCCCCCCCCCCEEECCHHCCCC----------CCCCCCC--HHH-HHHH Q ss_conf 7626854100012356--77778999998741143201289287522002454----------3224675--466-6643 Q gi|254780573|r 112 TRLACLAPTHQPRATN--HIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNY----------GSFSRRK--IDE-QKMG 176 (461) Q Consensus 112 ~~L~v~~p~~~pr~t~--~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~~~~Y----------G~Ls~~~--~~~-~~~g 176 (461) T Consensus 80 ~~L~I~-~d~~~r~~~~~~~~~v~~~i~~L~~~G~~y~~~~~~~y~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~ 158 (319) T cd00814 80 KWLNIS-FDYFGRTTSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLPEWREEEHYFFRLSKFQDKLLEWLEEN 158 (319) T ss_pred HHCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCEEEECCCCCCCCCEEEECCCEEEEHHHHHHHHHHHHHCC T ss_conf 984998-7867667880689999999999997898888410263658876456466422637878899789999999609 Q ss_pred H--------HCC-CCCCCCCCCCEE------EEECCCCCCCE-----E-ECCCC----CCCCCCCCHHHHHHHHHCCCCE Q ss_conf 2--------102-222101235126------66337766631-----4-14677----6676433204777787529841 Q gi|254780573|r 177 T--------RVP-EKYHKKNPADFI------LWKRSTPMEPG-----W-ESPWG----RGRPGWHIECSAMSSHYLGKVF 231 (461) Q Consensus 177 ~--------r~~-~~~~K~~p~DFa------LWK~~~~~e~~-----w-~spwG----~GRPGWHiECsam~~~~lg~~~ 231 (461) T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~d~~isR~~~~WG~~~P~~~~~~~yvW~da~~gy~~~~~~~~~~~~~~~~~--~~~~~~ 236 (319) T cd00814 159 PDFIWPENARNEVLSWLKEGLKDLSITRDLFKWGIPVPLDPDKVIYVWFDALIGYISATGYYTDEWGNSWWW--NDPWPE 236 (319) T ss_pred CCCCCCHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCEEECCHHCCCCCCCCCCCCCCCCCCCCCC--CCCCCC T ss_conf 876468057788877654377720010355545898889888543002101234000146666656876444--568841 Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHCCCCCCHHHEECCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHH Q ss_conf 48741356666875136688886408753012100343257642022332332140899850253345577799999998 Q gi|254780573|r 232 DIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAM 311 (461) Q Consensus 232 DIH~GG~DL~FPHHENEiAQs~a~~~~~~~a~yWlH~G~l~i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~l 311 (461) T Consensus 237 ~ih~~G~D-i~~~H~~~~~a~~~a~~-~~~~~~~~~~g~l~~~GeKMSKSlGN~i~~~dll-------~~~~~d~lR~~l 307 (319) T cd00814 237 LVHFIGKD-IVPFHAIYWPAMLLGAG-LPLPTRIFAHGYLTVEGKKMSKSRGNVVDPDDLL-------ERYGADALRYYL 307 (319) T ss_pred EEEEECCC-CCCHHHHHHHHHHHHCC-CCCCCEEEECCEEEECCEECCCCCCCCCCHHHHH-------HHCCCHHEHHHH T ss_conf 26784476-43188878999998569-9878688870239989946377299744599999-------877913566877 Q ss_pred HCCC-CCCCCCC Q ss_conf 4256-6432114 Q gi|254780573|r 312 LMTH-YREPIDF 322 (461) Q Consensus 312 Lssh-YRspLdf 322 (461) T Consensus 308 ls~~p~~~~~~F 319 (319) T cd00814 308 LRERPEGKDSDF 319 (319) T ss_pred HCCCCCCCCCCC T ss_conf 616888899999 |
This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and a anti-codon binding domain functions as a monomer. However, in some species, the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion that IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function. |
| >cd00668 Ile_Leu_Val_MetRS_core This is the catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=379.51 Aligned_cols=274 Identities=18% Similarity=0.180 Sum_probs=207.1 Q ss_pred EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCC-----CCHHHHHHHHHCCCCCCCCCCHHHHHHH Q ss_conf 99616788884441112799999999999997079984579960552-----3388899998708986448848999999 Q gi|254780573|r 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITD-----IDDKIIERARQEHPSIPINDAISIITSK 102 (461) Q Consensus 28 ~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTD-----idDkii~~a~~~~~~~~~~~~~~~~a~~ 102 (461) T Consensus 4 i~~~~P~~nG~LHiGHar~~~~~Dv~~R~~r~~G~~--V~~v~g-~D~~G~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (334) T cd00668 4 ITTPPPYVNGVLHLGHALTYTLKDIIARYKRMRGYN--VLFPPG-WDEHGLPIENKAEKEGGIEGKKEEFLEDPKEWVDK 80 (334) T ss_pred EECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC--EEECCC-CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH T ss_conf 955998888861466759899999999999816995--360686-68656899999999687121057777539999999 Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHH---HHHHHHHHHHHHHHHCCCCCCCCCCE------EECCHHCCCCCC--CCCCCH- Q ss_conf 999999987762685410001235---67777899999874114320128928------752200245432--246754- Q gi|254780573|r 103 NTQQFVKDTTRLACLAPTHQPRAT---NHIPQMIYLIQNIILHGHAYEANNEI------IFDTSSIPNYGS--FSRRKI- 170 (461) Q Consensus 103 ~~~~f~~d~~~L~v~~p~~~pr~t---~~i~~~i~~i~~L~~~g~aY~~~g~V------yFdv~~~~~YG~--Ls~~~~- 170 (461) T Consensus 81 ~~~~~~~~~~~lgi~~D~~~~~~T~~~~~~~~v~~~~~~L~~~G~iy~~~~~v~~~~~~f~~~~~~~~~l~~~~~~~~~~ 160 (334) T cd00668 81 YIEEFKEQFKRLGISFDWDRFYRTTDPEYYEAVQWIFLKLYEKGLIYRGERPVRLTEQWFLKLSKLKDRLLEALEKNEIW 160 (334) T ss_pred HHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEEHHHHHHHHHHHHHHCCCC T ss_conf 99999999999689768787611599999999999999999879989505667756547778899999999999848987 Q ss_pred -HHHHHHHHCCCCCCCCCCCC------------EEEEECCCC--------------CC---CEEECCCC-CCCCCCCCHH Q ss_conf -66664321022221012351------------266633776--------------66---31414677-6676433204 Q gi|254780573|r 171 -DEQKMGTRVPEKYHKKNPAD------------FILWKRSTP--------------ME---PGWESPWG-RGRPGWHIEC 219 (461) Q Consensus 171 -~~~~~g~r~~~~~~K~~p~D------------FaLWK~~~~--------------~e---~~w~spwG-~GRPGWHiEC 219 (461) T Consensus 161 p~~~~~--~~~~-~l~~~~~d~~isR~~~wG~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~Wfds~~~~~~~~~~~~~~ 237 (334) T cd00668 161 PENVRN--RFLN-WLENGLRDWCISRQRYWGIPIPAWYCEDCGEVCPKCGKELKRETDVLDVWFDSGIGYLSALGYPNEE 237 (334) T ss_pred CHHHHH--HHHH-HHHCCCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC T ss_conf 789999--9998-8746787752573346787556133256775566653113687653446641756543226786433 Q ss_pred HHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCHHHEECCCEEEE-EECCCCCCCCCCCCHHHHHCCCCCC Q ss_conf 777787529841487413566668751366888864087530121003432576-4202233233214089985025334 Q gi|254780573|r 220 SAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL-EGRKMSKSNGNFITINELLETKKFG 298 (461) Q Consensus 220 sam~~~~lg~~~DIH~GG~DL~FPHHENEiAQs~a~~~~~~~a~yWlH~G~l~i-~geKMSKSlGN~iti~dlL~~~~~~ 298 (461) T Consensus 238 ~~~~~~~~~~~~di~~~G~D~~~~h~~~~~a~~~a~~~~~~~~~~~~-~g~~~~~~G~KMSKS~GN~i~~~~~l------ 310 (334) T cd00668 238 EGFEEFEYWYPADLHVIGKDIIRFHLIYWPAMLLALFGKPPPKNVLV-HGLVLDEGGRKMSKSLGNVVDPLDAI------ 310 (334) T ss_pred CHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCHHHEEE-CCCEECCCCCCCCCCCCCCCCHHHHH------ T ss_conf 25668761798169871561363299999999998449850877574-20198389957388699888989999------ Q ss_pred CCCCCHHHHHHHHHCCC Q ss_conf 55777999999984256 Q gi|254780573|r 299 GRSWPAPVIRLAMLMTH 315 (461) Q Consensus 299 ~k~y~p~viR~~lLssh 315 (461) T Consensus 311 -~~~g~D~lR~~l~~~~ 326 (334) T cd00668 311 -EKYGADALRYYLLSAA 326 (334) T ss_pred -HHCCCHHHHHHHHHCC T ss_conf -8759489999999429 |
These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function. |
| >pfam09334 tRNA-synt_1g tRNA synthetases class I (M) | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=368.27 Aligned_cols=293 Identities=21% Similarity=0.201 Sum_probs=220.3 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 67888844411127999999999999970799845799605523388899998708986448848999999999999987 Q gi|254780573|r 32 GPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDT 111 (461) Q Consensus 32 GpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~~~~f~~d~ 111 (461) T Consensus 7 pP~~nG~lHiGHa~~~~~~Dvl~R~~r~~G~~--V~~v~g~D~~g~~i~~ka~~~g~~------~~e~~~~y~~~~~~~~ 78 (388) T pfam09334 7 LPYVNGPPHIGHLYTTIPADVYARYLRLRGYD--VLFVTGTDEHGTKIELAAEKEGVT------PQELVDRYHEEFKELF 78 (388) T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC--CEECCCCCCCHHHHHHHHHHCCCC------HHHHHHHHHHHHHHHH T ss_conf 98888860022418899999999999956997--071386485379999999984999------9999999999999999 Q ss_pred HHHCCCCCCHHHHHHH--HHHHHHHHHHHHHHCCCCCCCCCCEEECCHHC------------CCCC---------CCCCC Q ss_conf 7626854100012356--77778999998741143201289287522002------------4543---------22467 Q gi|254780573|r 112 TRLACLAPTHQPRATN--HIPQMIYLIQNIILHGHAYEANNEIIFDTSSI------------PNYG---------SFSRR 168 (461) Q Consensus 112 ~~L~v~~p~~~pr~t~--~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~~------------~~YG---------~Ls~~ 168 (461) T Consensus 79 ~~lgi~~-D~~~~t~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~~~~~~~~~~e~~G~ 157 (388) T pfam09334 79 KKFNISF-DDFIRTTSERHKELVQEFFLKLYEKGDIYEGEYEGWYCVSDERFLPDRYVEGTCPYCGSEDARGDQCEVCGR 157 (388) T ss_pred HHHCCCC-CCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHCCCC T ss_conf 9839967-878657984689999999875140681553241122366666666533307545755750136641002388 Q ss_pred CHHHHHH--------HHHCCCCCCCC----------C-----CCCEEEEECC---------CCCC----CEEECCCCCCC Q ss_conf 5466664--------32102222101----------2-----3512666337---------7666----31414677667 Q gi|254780573|r 169 KIDEQKM--------GTRVPEKYHKK----------N-----PADFILWKRS---------TPME----PGWESPWGRGR 212 (461) Q Consensus 169 ~~~~~~~--------g~r~~~~~~K~----------~-----p~DFaLWK~~---------~~~e----~~w~spwG~GR 212 (461) T Consensus 158 ~~e~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~Dw~ISR~~~WG~~i 237 (388) T pfam09334 158 PLEPTELINPRSAISGSTPELKEEEHYFFRLSKFQDKLLEWIKENPDEPPSNVNEVVLSWLKEGLKDLSITRDLDWGIPV 237 (388) T ss_pred CCCHHHHCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC T ss_conf 27867741764446799754432441233068899999999954998898899999999986688876441247787504 Q ss_pred CC--------C-------------CCHHHHHHHHHC---CCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCHHHEECC Q ss_conf 64--------3-------------320477778752---98414874135666687513668888640875301210034 Q gi|254780573|r 213 PG--------W-------------HIECSAMSSHYL---GKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHN 268 (461) Q Consensus 213 PG--------W-------------HiECsam~~~~l---g~~~DIH~GG~DL~FPHHENEiAQs~a~~~~~~~a~yWlH~ 268 (461) T Consensus 238 P~~~~~~~~vW~da~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~i~~~G~Di~~fh~~~~~a~~~~~-~-~~~~~~~~~~ 315 (388) T pfam09334 238 PGDPGKVIYVWFDALIGYISATKYLSGNPEKWKKFWADDPDTEIVHFIGKDIIRFHAIYWPAMLMAA-G-LPLPTQVFAH 315 (388) T ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHC-C-CCCCCEEEEE T ss_conf 8889806877235655520002777778178886443677620001067641420178999999838-9-9988667875 Q ss_pred CEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHH-CCCCCCCCCCCHHHHHHHHH--HHHHCCCCCC Q ss_conf 32576420223323321408998502533455777999999984-25664321145034687776--4321000013 Q gi|254780573|r 269 GFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAML-MTHYREPIDFTVQRLTEAEI--LLSKWPQTST 342 (461) Q Consensus 269 G~l~i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~lL-sshYRspLdfS~e~L~~A~~--~l~kl~~~~~ 342 (461) T Consensus 316 g~v~~~G~KMSKSlGN~i~~~d~i-------~~ygaDalR~~L~~~~~~~~d~~Fs~~~~~~~~n~~~~~kl~N~~~ 385 (388) T pfam09334 316 GWLTVEGGKMSKSRGNVVDPDELL-------DRYGVDALRYYLAREAPEGKDGDFSWEDFVERVNSELANDLGNLVN 385 (388) T ss_pred EEEEECCEECCCCCCCCCCHHHHH-------HHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 799759944478699878889999-------8878289999999539998999899999999987998887765773 |
This family includes methionyl tRNA synthetases. |
| >cd00812 LeuRS_core This is the catalytic core domain of leucyl tRNA synthetase (LeuRS) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-34 Score=263.10 Aligned_cols=272 Identities=17% Similarity=0.139 Sum_probs=179.9 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCC-----------------CCC Q ss_conf 788884441112799999999999997079984579960552338889999870898644-----------------884 Q gi|254780573|r 33 PTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPI-----------------NDA 95 (461) Q Consensus 33 pTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~-----------------~~~ 95 (461) T Consensus 9 PY~NG~~HiGH~~~~i~aDi~~Ry~Rm~G~~--V~~~~G~DeHG~pI~~~A~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (376) T cd00812 9 PYPSGRLHVGHVRTYTIGDIIARYKRMKGYN--VLFPMGFDAFGLPAENAADKIGREDEDTIEPYRDVGVPDEEIEKFAD 86 (376) T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHCCCC T ss_conf 8889745468869899999999999955997--04688456567899999999687477653011110001887861279 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHC---CCC----CCC Q ss_conf 899999999999998776268541---0001235677778999998741143201289287522002---454----322 Q gi|254780573|r 96 ISIITSKNTQQFVKDTTRLACLAP---THQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI---PNY----GSF 165 (461) Q Consensus 96 ~~~~a~~~~~~f~~d~~~L~v~~p---~~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~~---~~Y----G~L 165 (461) T Consensus 87 p~~~~~~~~~~~~~~~~~lg~~~D~~~~~~T~~~~~~~~vq~~f~~L~~~G~iy~~~~~~~y~~~~~~~f~~~~~~~~~~ 166 (376) T cd00812 87 PKYWTEYFIAKMKEQLKRMGFSIDWRREFTTTDPEYYKFTQWQFLKLKEKGLIYKGEAPVNWCKLLDQWFLKYSTEWAER 166 (376) T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCCEECCCCCCCEEEECCCHHHHHH T ss_conf 99999999999999999809873768664337778999999999999988988951755536467760574166788999 Q ss_pred CCCCHHHHHHH---HHCCC----CCCCCCCCCEEEEECCC-CCCCEE--------ECCCCCCCCCCCCHH---------- Q ss_conf 46754666643---21022----22101235126663377-666314--------146776676433204---------- Q gi|254780573|r 166 SRRKIDEQKMG---TRVPE----KYHKKNPADFILWKRST-PMEPGW--------ESPWGRGRPGWHIEC---------- 219 (461) Q Consensus 166 s~~~~~~~~~g---~r~~~----~~~K~~p~DFaLWK~~~-~~e~~w--------~spwG~GRPGWHiEC---------- 219 (461) T Consensus 167 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dw~isr~~~~~~~wg~~ip~~~~~~~~~~~~~~~~ 246 (376) T cd00812 167 LLKDLEGLDTWPEEVKNMQENWIGWLKGWACARRYGLGTVLPWDRDWLIERLRDSTIYWGYYTPAHHCEKCGPVCPKCGK 246 (376) T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEECCCCCC T ss_conf 87404204678688999999987302465254111115406555443413444566667700215975678641466675 Q ss_pred ----------------------------HHHH-HHHCC--CCEEEEEECCCCCCCCCHHHHHHHHHH---CCCCCCHHHE Q ss_conf ----------------------------7777-87529--841487413566668751366888864---0875301210 Q gi|254780573|r 220 ----------------------------SAMS-SHYLG--KVFDIHGGGLDLIFPHHENEIAQSCCA---DRIEKTANIW 265 (461) Q Consensus 220 ----------------------------sam~-~~~lg--~~~DIH~GG~DL~FPHHENEiAQs~a~---~~~~~~a~yW 265 (461) T Consensus 247 ~~~~~~~~~~~w~~~~w~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~~GkDii~fH~~~~~~~~~~l~~~~~~~~p~~-v 325 (376) T cd00812 247 PAKRETDTMDEFFDSSWYYLRYLDPKNSEAPFDREEFEYWYPVDLYIGGKEHAVNHLLYSRFNHKALFDEGTKEPPKG-L 325 (376) T ss_pred CCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCE-E T ss_conf 556654468865776301466678433447668799984288606881335420136799999999986467779826-6 Q ss_pred ECCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHCC Q ss_conf 0343257642022332332140899850253345577799999998425 Q gi|254780573|r 266 IHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMT 314 (461) Q Consensus 266 lH~G~l~i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~lLss 314 (461) T Consensus 326 ~~hG~l~~~G~KMSKS~Gn~v~p~~~l~-------~yg~D~lR~~Ll~~ 367 (376) T cd00812 326 RVQGMVLLEGEKMSKSKGNVVTPDEAIK-------KYGADATRLYLLFA 367 (376) T ss_pred EECCCEECCCEECCCCCCCCCCHHHHHH-------HCCCHHHHHHHHHC T ss_conf 8757296699663778998849899998-------85954999999944 |
This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. |
| >cd00817 ValRS_core This is the catalytic core domain of valine amino-acyl tRNA synthetases (ValRS) | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-27 Score=216.26 Aligned_cols=265 Identities=18% Similarity=0.203 Sum_probs=174.3 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCC---CC-------CHHHHHH Q ss_conf 6788884441112799999999999997079984579960552338889999870898644---88-------4899999 Q gi|254780573|r 32 GPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPI---ND-------AISIITS 101 (461) Q Consensus 32 GpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~---~~-------~~~~~a~ 101 (461) T Consensus 9 ipYaNG~~HiGHa~~~i~aDv~aRy~rm~G~~--V~f~~G~DeHGlpie~~~ek~~~~~~~~~~~~~~~~f~~~~~~~~~ 86 (363) T cd00817 9 PPNVTGSLHIGHALTNTIQDIIARYKRMKGYN--VLWPPGTDHAGIATQVVVEKKLGIEGKTRHDLGREEFLEKCWEWKE 86 (363) T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHHH T ss_conf 99888861352789899999999999816997--7887845756689999999983605665000798999999999999 Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHH--HHHHHHHHHHHHHHHCCCCCCCCCCE------------EECCHHCCCCCCCC Q ss_conf 999999998776268541-0001235--67777899999874114320128928------------75220024543224 Q gi|254780573|r 102 KNTQQFVKDTTRLACLAP-THQPRAT--NHIPQMIYLIQNIILHGHAYEANNEI------------IFDTSSIPNYGSFS 166 (461) Q Consensus 102 ~~~~~f~~d~~~L~v~~p-~~~pr~t--~~i~~~i~~i~~L~~~g~aY~~~g~V------------yFdv~~~~~YG~Ls 166 (461) T Consensus 87 ~~~~~~~~~~~~lg~~~D~~~~~rT~d~~h~~~vq~~f~~l~~~G~iY~~~~~v~~~ve~~~~~~~f~~~~~~~~~l--- 163 (363) T cd00817 87 ESGGKIREQLKRLGASVDWSREYFTMDPGLSKAVQEAFVRLYEKGLIYRANRLVNWVIEPLLKPQWFVKVKDLAKAA--- 163 (363) T ss_pred HHHHHHHHHHHHHCHHCCCCCCEECCCHHHHHHHHHHHHHHHHCCCEECCCCEECCEEEEEECCEEEEECHHHHHHH--- T ss_conf 99999999999833011657503437767999999999999988897636824573779987761689877889999--- Q ss_pred CCCHHHHHHHHH-CCCCC-------CCCCCCCEEE------------EE--------CC-----------------CCCC Q ss_conf 675466664321-02222-------1012351266------------63--------37-----------------7666 Q gi|254780573|r 167 RRKIDEQKMGTR-VPEKY-------HKKNPADFIL------------WK--------RS-----------------TPME 201 (461) Q Consensus 167 ~~~~~~~~~g~r-~~~~~-------~K~~p~DFaL------------WK--------~~-----------------~~~e 201 (461) T Consensus 164 ---~~~~~~~~~~~~P~~~~~~~~~~l~~l~Dw~ISR~~~WG~piP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (363) T cd00817 164 ---LEAVKEGDIKFVPERMEKRYEDWLENIRDWCISRQLWWGHRIPAWYCEDCGHWVVAREEEEAVDPAIPEACCPCGSE 240 (363) T ss_pred ---HHHHHCCCCEEECHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCEEECCCCCCEEECCCHHHHHHHHHHCCCCCCCCC T ss_conf ---99996299778578999999999851576533100013666661462789847706733641112432047888721 Q ss_pred -C--------EE-EC-CCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCHHHEECCCE Q ss_conf -3--------14-14-6776676433204777787529841487413566668751366888864087530121003432 Q gi|254780573|r 202 -P--------GW-ES-PWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGF 270 (461) Q Consensus 202 -~--------~w-~s-pwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~FPHHENEiAQs~a~~~~~~~a~yWlH~G~ 270 (461) T Consensus 241 ~~~~~~dv~dvWfds~~~~~~~~~~~~~~~~~~~-~--~p~d~~~~GkDIirfW~~~~~~~~~~l~~~~P~~~v~~HG~v 317 (363) T cd00817 241 ELEQDTDVLDTWFSSSLWPFSTLGWPEETKDLKK-F--YPTSLLPTGHDIIFFWVARMIMRGLELTGKLPFKEVYIHGLV 317 (363) T ss_pred CCCCCCCCCCHHHHHCCCCHHHHCCCCCCCHHHH-C--CCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEECCEE T ss_conf 1303677653044524772255089743314540-7--876378762388746999999987662489886566878628 Q ss_pred EEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHCC Q ss_conf 57642022332332140899850253345577799999998425 Q gi|254780573|r 271 LNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMT 314 (461) Q Consensus 271 l~i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~lLss 314 (461) T Consensus 318 l~~~G~KMSKS~GNvv~p~~~l-------~~yg~D~lRy~l~~~ 354 (363) T cd00817 318 RDEDGRKMSKSLGNVIDPLDVI-------DGYGADALRFTLASA 354 (363) T ss_pred ECCCCCCCCCCCCCCCCHHHHH-------HHCCCHHHHHHHHHH T ss_conf 9999887578899866989999-------877927999999952 |
This enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. |
| >cd00818 IleRS_core This is the catalytic core domain of isoleucine amino-acyl tRNA synthetases (IleRS) | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-25 Score=200.82 Aligned_cols=281 Identities=19% Similarity=0.192 Sum_probs=172.4 Q ss_pred EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC-CHHHHHHHHHC-CCCCCC---C-------C Q ss_conf 9996167888844411127999999999999970799845799605523-38889999870-898644---8-------8 Q gi|254780573|r 27 RMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDI-DDKIIERARQE-HPSIPI---N-------D 94 (461) Q Consensus 27 ~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDi-dDkii~~a~~~-~~~~~~---~-------~ 94 (461) T Consensus 4 ~~~~~pPYaNg~pHiGHa~~~i~aDv~aRy~Rl~G~~--v~f~~G-tDeHG~pIe~~a~k~~~~~~~~~~~~~~~~~f~~ 80 (339) T cd00818 4 VFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYY--VPRRPG-WDCHGLPIELKVEKELGISGKKDIEKMGIAEFRA 80 (339) T ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC--CCCCCC-CCHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHH T ss_conf 9958998857873455889999999999999806998--877885-1440399999999964898730476559999999 Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCH--HCCC-CCCCCCC Q ss_conf 48999999999999987762685410---0012356777789999987411432012892875220--0245-4322467 Q gi|254780573|r 95 AISIITSKNTQQFVKDTTRLACLAPT---HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTS--SIPN-YGSFSRR 168 (461) Q Consensus 95 ~~~~~a~~~~~~f~~d~~~L~v~~p~---~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~--~~~~-YG~Ls~~ 168 (461) T Consensus 81 ~~~~~~~~~~~~~~~~~~~~g~~~d~~~~~~T~~~~~~~~~~~~f~~l~~~G~iy~~~~~~~~p~~~~~~~~~F~~l~~~ 160 (339) T cd00818 81 KCREFALRYIDEQEETFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLYEKGLLYRGYKVVPWPLIYRATPQWFIRVEKL 160 (339) T ss_pred HHHHHHHHHHHHHHHHHHHHCHHCCCCCCEECCCHHHHHHHHHHHHHHHHCCCEECCCEEECCCCCCEECCCEEEECHHH T ss_conf 99999999999999999983735147777121688999999999999998888626760536876005815679986899 Q ss_pred CHHHHH-HHHHCC--CCCCCCCCCCEEEEECCCC-CCCEEECCCCCCCCCCCCH-HHHH------------------HHH Q ss_conf 546666-432102--2221012351266633776-6631414677667643320-4777------------------787 Q gi|254780573|r 169 KIDEQK-MGTRVP--EKYHKKNPADFILWKRSTP-MEPGWESPWGRGRPGWHIE-CSAM------------------SSH 225 (461) Q Consensus 169 ~~~~~~-~g~r~~--~~~~K~~p~DFaLWK~~~~-~e~~w~spwG~GRPGWHiE-Csam------------------~~~ 225 (461) T Consensus 161 ~-~~ll~~~~~~~~~p~~~~~~--~l~~~~~~l~Dw~ISR~~~WGipvP~w~~~~~~~~~~~~~~dv~yVWfDa~~~~~~ 237 (339) T cd00818 161 K-DRLLEANDKVNWIPEWVKEG--RFGNWLENRRDWCISRQRYWGTPIPVWYSEDCGEVLVRRVPDVLDVWFDSGSMPYA 237 (339) T ss_pred H-HHHHHHHHCCCEECCHHHHH--HHHHHHHCCCCCEEEECCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHCCCCHHH T ss_conf 9-99998775387378610664--99999716856504402666753463564899832100365017777635624898 Q ss_pred HCCC-----------CEEEEEECCCCCC--CCCHHHHHHHHHHCCCCCCHHHEECCCEEEEEECCCCCCCCCCCCHHHHH Q ss_conf 5298-----------4148741356666--87513668888640875301210034325764202233233214089985 Q gi|254780573|r 226 YLGK-----------VFDIHGGGLDLIF--PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELL 292 (461) Q Consensus 226 ~lg~-----------~~DIH~GG~DL~F--PHHENEiAQs~a~~~~~~~a~yWlH~G~l~i~geKMSKSlGN~iti~dlL 292 (461) T Consensus 238 ~~~~~~~~~~~~~~~p~~~~~~GkDi~~~~f~~--~~~~~~~~~~~~P~~~v~~hg~~l~~~G~KMSKS~GnvI~p~~~l 315 (339) T cd00818 238 QLHYPFENEDFEELFPADFILEGSDQTRGWFYS--LLLLSTALFGKAPYKNVIVHGFVLDEDGRKMSKSLGNVVDPQEVI 315 (339) T ss_pred HCCCCCCCHHHHCCCCCEEEEECCCCCCHHHHH--HHHHHHHHCCCCCCCEEEECCEEECCCCCCCCCCCCCCCCHHHHH T ss_conf 728986431341387660566063312337999--999878854899852148898499999866278899878989999 Q ss_pred CCCCCCCCCCCHHHHHHHHHCC-CCCCCCCC Q ss_conf 0253345577799999998425-66432114 Q gi|254780573|r 293 ETKKFGGRSWPAPVIRLAMLMT-HYREPIDF 322 (461) Q Consensus 293 ~~~~~~~k~y~p~viR~~lLss-hYRspLdf 322 (461) T Consensus 316 -------~~y~~D~lRyyl~~~~~~~~D~~F 339 (339) T cd00818 316 -------DKYGADALRLWVASSDVYAEDLRF 339 (339) T ss_pred -------HHCCCHHHHHHHHHCCCCCCCCCC T ss_conf -------876947999999916888889999 |
This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. |
| >cd00674 LysRS_core_class_I This is the catalytic core domain of lysyl tRNA synthetase (LysRS) | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-21 Score=173.19 Aligned_cols=271 Identities=19% Similarity=0.217 Sum_probs=187.4 Q ss_pred EEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC-----HHHHHHHHHCCCCC-------CCC Q ss_conf 799961678888444111279999999999999707998457996055233-----88899998708986-------448 Q gi|254780573|r 26 IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDID-----DKIIERARQEHPSI-------PIN 93 (461) Q Consensus 26 v~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDid-----Dkii~~a~~~~~~~-------~~~ 93 (461) T Consensus 20 ~~v~~tG~~PSG~~HIGn~rEv~~~~~V~ral~~~g~~--~~~i~~~DD~D~lRKVp~~lpe~~~~ylg~PL~~IPdP~G 97 (354) T cd00674 20 KYVVASGISPSGLIHIGNFREVVTADAVRRALRDLGFE--VRLIYSWDDYDPLRKVPDNVPESLEQYIGMPLSSVPDPFG 97 (354) T ss_pred CEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEEEEECCCHHCCCCCCCCHHHHHHCCCCCEECCCCCC T ss_conf 58994787999886320550178899999999975996--7999984055510037557879999862996300689777 Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCC----CCHHHHH---HHHHHHHHHHHHHHHHCCCCCCC--CCCEEECCHHC-CCCC Q ss_conf 8489999999999999877626854----1000123---56777789999987411432012--89287522002-4543 Q gi|254780573|r 94 DAISIITSKNTQQFVKDTTRLACLA----PTHQPRA---TNHIPQMIYLIQNIILHGHAYEA--NNEIIFDTSSI-PNYG 163 (461) Q Consensus 94 ~~~~~~a~~~~~~f~~d~~~L~v~~----p~~~pr~---t~~i~~~i~~i~~L~~~g~aY~~--~g~VyFdv~~~-~~YG 163 (461) T Consensus 98 ~-~~SyaeHf~~~f~~~L~~~gi~~e~~s~te~Y~sG~f~~~i~~~l~~~~~I~~Il~~~~g~e~~~~y~P~~piC~~cG 176 (354) T cd00674 98 C-HESYAEHFNAPFEESLDRFGIEVEFISASEMYKSGLYDEQIKRALEKRDEIMEILNEYRGRELQETWYPYMPYCEKCG 176 (354) T ss_pred C-CCCHHHHHHHHHHHHHHHCCCEEEEEEHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCC T ss_conf 7-545999999999999998498289988566022576279999999828999999998547555786477764058888 Q ss_pred CCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCC Q ss_conf 22467546666432102222101235126663377666314146776676433204777787529841487413566668 Q gi|254780573|r 164 SFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 (461) Q Consensus 164 ~Ls~~~~~~~~~g~r~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~FP 243 (461) T Consensus 177 k~~----------t~v~---~~d~~~~~V~Y~c~cG~~~~~~~~~g~gKL~WrvDW~-mRW~~lg--Vd~Ep~GKDh~~~ 240 (354) T cd00674 177 KDT----------TTVE---EYDAEAETVRYRCECGHEGEVDIRGGGGKLQWRVDWA-MRWAALG--VDFEPFGKDHASS 240 (354) T ss_pred CCE----------EEEE---EEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCE-EEEEECC--EEEEECCCCCCCC T ss_conf 116----------7689---9948999799995999888884378862030010351-4553405--1588357420246 Q ss_pred CCHHHHHHHHH--HCCCCCCHHHEECCCEEEE-EECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCC-CCC Q ss_conf 75136688886--4087530121003432576-4202233233214089985025334557779999999842566-432 Q gi|254780573|r 244 HHENEIAQSCC--ADRIEKTANIWIHNGFLNL-EGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHY-REP 319 (461) Q Consensus 244 HHENEiAQs~a--~~~~~~~a~yWlH~G~l~i-~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~lLsshY-Rsp 319 (461) T Consensus 241 GgS~d~~~~I~~~i~g~~pP-~~~~Y-E~~~~kgg~KmSsSkGn~it~~e~L-------~~~~pE~lr~l~~~~p~~~k~ 311 (354) T cd00674 241 GGSYDTSKEIAREIFGGEPP-EGVMY-EFIGLKGGGKMSSSKGNVITPRDWL-------EVAPPESLRFLYARRKNPAKH 311 (354) T ss_pred CCCHHHHHHHHHHHCCCCCC-CCCCE-EEEEECCCCCCCCCCCCCCCHHHHH-------HHCCHHHHHHHHHHCCCCCCC T ss_conf 75255789999997099999-88416-9999069987224678612899999-------765999999998609985532 Q ss_pred CCCCH Q ss_conf 11450 Q gi|254780573|r 320 IDFTV 324 (461) Q Consensus 320 LdfS~ 324 (461) T Consensus 312 i~fD~ 316 (354) T cd00674 312 IGFDL 316 (354) T ss_pred CCCCC T ss_conf 24675 |
This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity. |
| >pfam01921 tRNA-synt_1f tRNA synthetases class I (K) | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-19 Score=160.33 Aligned_cols=276 Identities=18% Similarity=0.177 Sum_probs=180.4 Q ss_pred EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCH--HHHH----H-HHHCCC-------CCCC Q ss_conf 999616788884441112799999999999997079984579960552338--8899----9-987089-------8644 Q gi|254780573|r 27 RMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDD--KIIE----R-ARQEHP-------SIPI 92 (461) Q Consensus 27 ~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidD--kii~----~-a~~~~~-------~~~~ 92 (461) T Consensus 21 ~v~~tG~~PSG~~HIGnfrEv~~~~~V~~al~~~g~~--~~~i~~~DD~D~lRKVP~nlp~~e~~~~ylg~Pl~~IPdP~ 98 (355) T pfam01921 21 ILVETGIGPSGLPHIGNFREVLRTDAVRRALRKRGFE--TRLIYFSDDMDGLRKVPDNVPNSEMLEKYLGKPLTRIPDPF 98 (355) T ss_pred EEEECCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCC--EEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCCEECCCCC T ss_conf 8995266899886421560179999999999974987--69999821565101378899998999873697521347988 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHH--------------HHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHH Q ss_conf 8848999999999999987762685410001--------------23567777899999874114320128928752200 Q gi|254780573|r 93 NDAISIITSKNTQQFVKDTTRLACLAPTHQP--------------RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSS 158 (461) Q Consensus 93 ~~~~~~~a~~~~~~f~~d~~~L~v~~p~~~p--------------r~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~ 158 (461) T Consensus 99 g~-~~Sya~h~~~~~~~~L~~~gi~~ef~s~te~Y~sG~~~~~i~~~l~~~~~I~~Il~~~~g~e~~----~-~y~Pf~p 172 (355) T pfam01921 99 GC-HESYAEHFNAPFLEFLDRFGIEYEFISATELYKSGLYDEAILIALENRDEIMEILLPYRGEERQ----E-TYSPFLP 172 (355) T ss_pred CC-CCCHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC----C-CEEEEEE T ss_conf 87-4559999999999999983982899867885524655999999998589999999985286668----8-7368988 Q ss_pred C-CCCCCCCCCCHHHHH-HHHHCC--CCCCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEE Q ss_conf 2-454322467546666-432102--222101235126663377666314146776676433204777787529841487 Q gi|254780573|r 159 I-PNYGSFSRRKIDEQK-MGTRVP--EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIH 234 (461) Q Consensus 159 ~-~~YG~Ls~~~~~~~~-~g~r~~--~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH 234 (461) T Consensus 173 iC~~cGrv~~t~v~~~d~~~~~v~Y~c~cG~~~~~~~------~~g--~~KL~W---kvDW-----~mRW~~lg--VdfE 234 (355) T pfam01921 173 ICPKCGRVLTTPVVEYDAEGGTITYRCECGHEGEVDI------TGG--NGKLQW---KVDW-----AMRWAALG--VDFE 234 (355) T ss_pred ECCCCCCEEEEEEEEEECCCCEEEEECCCCCEEEEEE------CCC--CCCCCC---CCCC-----HHEEEEEC--CEEE T ss_conf 8588893725689999678987999869998899841------157--666787---5663-----33057856--3486 Q ss_pred EECCCCCCCCCHHHHHHHHH---HCCCCCC-HHHEECCCEEEE-EECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHH Q ss_conf 41356666875136688886---4087530-121003432576-420223323321408998502533455777999999 Q gi|254780573|r 235 GGGLDLIFPHHENEIAQSCC---ADRIEKT-ANIWIHNGFLNL-EGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRL 309 (461) Q Consensus 235 ~GG~DL~FPHHENEiAQs~a---~~~~~~~-a~yWlH~G~l~i-~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~ 309 (461) T Consensus 235 p~GKDh~~~GGS~~~~~~I~~~i~g~~pP~~~~Y----E~~~~kgg~KmSsSkGn~is~~e~L-------~~~~pE~Lr~ 303 (355) T pfam01921 235 PFGKDHAAPGGSYDTSSRIAREILGGEPPEPFPY----ELILLKGGGKMSSSKGNGITIEEWL-------EYAPPESLRF 303 (355) T ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCE----EEEEECCCCCCCCCCCCCCCHHHHH-------HHCCHHHHHH T ss_conf 2574324678762228999999709999998865----7899669971046889876999999-------8669999999 Q ss_pred HHHCCCCCCCCCCCHHHHHHHHHHHHHCCC Q ss_conf 984256643211450346877764321000 Q gi|254780573|r 310 AMLMTHYREPIDFTVQRLTEAEILLSKWPQ 339 (461) Q Consensus 310 ~lLsshYRspLdfS~e~L~~A~~~l~kl~~ 339 (461) T Consensus 304 l~~~~~P~~a~~l~fd~ip~~~Deyd~~~~ 333 (355) T pfam01921 304 LMFRVKPKKAKRLDFDVIPKLVDEYDRLER 333 (355) T ss_pred HHCCCCCCCCEEECCCHHHHHHHHHHHHHH T ss_conf 980428884512073044668999999999 |
This family includes only lysyl tRNA synthetases from prokaryotes. |
| >COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.1e-15 Score=129.29 Aligned_cols=314 Identities=19% Similarity=0.213 Sum_probs=206.0 Q ss_pred EEEECCCC---EEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC-----CHHHHHHHHHCCC Q ss_conf 23304798---479996167888844411127999999999999970799845799605523-----3888999987089 Q gi|254780573|r 17 EFQAIDPS---NIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDI-----DDKIIERARQEHP 88 (461) Q Consensus 17 ~f~p~~~~---~v~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDi-----dDkii~~a~~~~~ 88 (461) T Consensus 23 ~f~~~~~~~~~~f~I~~PPPNVTG~LHmGHAl~~tl~D~l~RykRM~G~~--vl~~pG-~DhAGIaTq~~VEk~l~~~g~ 99 (877) T COG0525 23 YFKPDPNEDKPPFSIDTPPPNVTGSLHMGHALNYTLQDILARYKRMRGYN--VLWPPG-TDHAGIATQVVVEKQLAAEGI 99 (877) T ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCE--EECCCC-CCCCCCHHHHHHHHHHHHCCC T ss_conf 85678877789727968979988865116545378999999998707973--335798-777883089999999987098 Q ss_pred CCCC-C-----CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH---HHHHHHHHHHHHHHHCCCCCCCCCCEEECCH-- Q ss_conf 8644-8-----848999999999999987762685410001235---6777789999987411432012892875220-- Q gi|254780573|r 89 SIPI-N-----DAISIITSKNTQQFVKDTTRLACLAPTHQPRAT---NHIPQMIYLIQNIILHGHAYEANNEIIFDTS-- 157 (461) Q Consensus 89 ~~~~-~-----~~~~~~a~~~~~~f~~d~~~L~v~~p~~~pr~t---~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~-- 157 (461) T Consensus 100 ~r~d~gRe~Fl~~~weWk~e~~~~I~~Q~~rLG~S~DWsrE~fTmD~~~s~av~~~Fv~Ly~~GlIYr~~~lVNWcP~~~ 179 (877) T COG0525 100 TRHDLGREEFLKKCWEWKEESGGTIREQLRRLGVSVDWSRERFTMDPGLSRAVQEAFVRLYEKGLIYRGERLVNWCPKCR 179 (877) T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCC T ss_conf 80105899999999999999989999999984787355531126798899999999999997894651487434788633 Q ss_pred ---------------------------------------------------HCCCCCCCCCCCHHHHHHHHHCC---C-- Q ss_conf ---------------------------------------------------02454322467546666432102---2-- Q gi|254780573|r 158 ---------------------------------------------------SIPNYGSFSRRKIDEQKMGTRVP---E-- 181 (461) Q Consensus 158 ---------------------------------------------------~~~~YG~Ls~~~~~~~~~g~r~~---~-- 181 (461) T Consensus 180 TAiSd~EVe~~e~~g~L~~i~y~l~~~~~~i~VATTRPEtmlgdtAVaVhP~DeRYk~LvGk~v~lPl~~r~IpIiaD~~ 259 (877) T COG0525 180 TAISDIEVEYKEVEGKLYYIKYPLADGDGYLVVATTRPETLLGDTAVAVHPDDERYKHLVGKEVILPLVGREIPIIADEY 259 (877) T ss_pred CCHHHHHHCCCCCCEEEEEEEEECCCCCCEEEEEECCCCCCCCCEEEEECCCCHHHHHHCCCEEECCCCCCEEEEECCCC T ss_conf 40204450001100368999975389986389981686301026699989987666863588896468897533534733 Q ss_pred -CC----------CCCCCCCEEEEEC------------------------------------------------------ Q ss_conf -22----------1012351266633------------------------------------------------------ Q gi|254780573|r 182 -KY----------HKKNPADFILWKR------------------------------------------------------ 196 (461) Q Consensus 182 -~~----------~K~~p~DFaLWK~------------------------------------------------------ 196 (461) T Consensus 260 VD~eFGTG~VkItpahD~nD~e~~krh~Lp~i~i~d~dG~in~~~~~~~~Gl~r~eAR~kIv~~L~~~GlLvk~e~~~h~ 339 (877) T COG0525 260 VDPEFGTGAVKITPAHDFNDYEVGKRHNLPLINIIDEDGRINEEAAGEFAGLDRFEARKKIVEDLEEQGLLVKIEPHKHS 339 (877) T ss_pred CCCCCCCCEEEECCCCCCCHHHHHHCCCCCCEEEECCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCC T ss_conf 47767874189716999406545301798720688899705467764458986999999999999968996766444541 Q ss_pred ---------------------------------CCCCCCEE-----------------------ECCCCCCCCCCCC-HH Q ss_conf ---------------------------------77666314-----------------------1467766764332-04 Q gi|254780573|r 197 ---------------------------------STPMEPGW-----------------------ESPWGRGRPGWHI-EC 219 (461) Q Consensus 197 ---------------------------------~~~~e~~w-----------------------~spwG~GRPGWHi-EC 219 (461) T Consensus 340 V~~~~R~g~~IEp~ls~QWfVk~~~la~~~l~~~~~g~i~f~P~~~~~~~~~W~~~i~DWcISRQlwwGh~IPvWy~~~~ 419 (877) T COG0525 340 VGHCERCGTPIEPLLSKQWFVKVLELAKKALEAVKDGKIKFVPERMEKRYEDWMENIRDWCISRQLWWGHRIPVWYCKEC 419 (877) T ss_pred CCCCCCCCCEEEEEECCEEEEEHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEECCC T ss_conf 76116779602012324214870752699999874598468168899889999863837642221131763515996699 Q ss_pred HHHHHH----------------HC---------------------C---------C--CEEEEEECCCCCCCCCHHHHHH Q ss_conf 777787----------------52---------------------9---------8--4148741356666875136688 Q gi|254780573|r 220 SAMSSH----------------YL---------------------G---------K--VFDIHGGGLDLIFPHHENEIAQ 251 (461) Q Consensus 220 sam~~~----------------~l---------------------g---------~--~~DIH~GG~DL~FPHHENEiAQ 251 (461) T Consensus 420 g~v~v~~~~~~~~~~~~~~~~~~~~qd~DVLDTWFSS~LwPfstlgWp~~t~~l~~fyPt~llvtG~DIIffWvarmi~~ 499 (877) T COG0525 420 GNVVVAEEEPEDPAAAEKCPKEELEQDEDVLDTWFSSSLWPFSTLGWPEETPDLKKFYPTDLLVTGHDIIFFWVARMIMR 499 (877) T ss_pred CCEEECCCCCCCHHHHCCCCHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCEECCCCHHHHHHHHHHHHH T ss_conf 83896786543535424682202057852323324115646400689874447773588730035531338999999999 Q ss_pred HHHHCCCCCCHHHEECCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHCC-CCCCCCCCCHHHHHHH Q ss_conf 886408753012100343257642022332332140899850253345577799999998425-6643211450346877 Q gi|254780573|r 252 SCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMT-HYREPIDFTVQRLTEA 330 (461) Q Consensus 252 s~a~~~~~~~a~yWlH~G~l~i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~lLss-hYRspLdfS~e~L~~A 330 (461) T Consensus 500 ~~~~~~~~PFk~V~ihGLVrDe~G~KMSKS~GNvIDP~d~I~-------~yGaDAlRf~la~~~~~G~Di~~~~~~~~~~ 572 (877) T COG0525 500 GLHLTGEVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDVID-------KYGADALRFTLASLASPGRDINFDEKRVEGY 572 (877) T ss_pred HHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCHHHHHH-------HHCHHHHHHHHHHCCCCCCCCCCCHHHHHHH T ss_conf 998658999627898116786888887555788589799998-------8485899999995368886657688998889 Q ss_pred HHHHHHCCCC Q ss_conf 7643210000 Q gi|254780573|r 331 EILLSKWPQT 340 (461) Q Consensus 331 ~~~l~kl~~~ 340 (461) T Consensus 573 rnF~nKlWNa 582 (877) T COG0525 573 RNFLNKLWNA 582 (877) T ss_pred HHHHHHHHHH T ss_conf 9999998749 |
|
| >PRK12451 arginyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.5e-13 Score=111.47 Aligned_cols=262 Identities=15% Similarity=0.117 Sum_probs=157.7 Q ss_pred CCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHH---H------------------ Q ss_conf 7984799961678888444111279999999999999707998457996055233888---9------------------ Q gi|254780573|r 22 DPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKI---I------------------ 80 (461) Q Consensus 22 ~~~~v~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDki---i------------------ 80 (461) T Consensus 111 ~~k~v~vEfvSaNPtgpLHVGH~R~aiiGdsLariL~~~G~~--V~reyYinD~G~Qi~~l~~~~~~~~~~~~~~~~~~~ 188 (562) T PRK12451 111 CEKTVVIDYSSPNIAKPFSMGHLRSTMIGNSLKHIAEKCGYE--VVGINYIGDWGTQFGKLITAYKKWGNEAVVKEDPIR 188 (562) T ss_pred CCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCE--EEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCHH T ss_conf 998799985289999886242246279999999999986985--999997477308999999999985440112467578 Q ss_pred ------HHHHHC-------------------CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH Q ss_conf ------999870-------------------8986448848999999999999987762685410001235677778999 Q gi|254780573|r 81 ------ERARQE-------------------HPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYL 135 (461) Q Consensus 81 ------~~a~~~-------------------~~~~~~~~~~~~~a~~~~~~f~~d~~~L~v~~p~~~pr~t~~i~~~i~~ 135 (461) T Consensus 189 ~l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~~d~~~~~~~~~~~~~~l~~~~~~l~~l~v~fD~~~-~Es~~~~~~~~~ 267 (562) T PRK12451 189 ELFKLYVQFHEEVKDDEELEEEGRAWFKKLEEGDEEAVELWNWFRHESLKEFSRIYELLGVEFTNFQ-GEAFYNNLMEDF 267 (562) T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEE-CHHHHHHHHHHH T ss_conf 9999999999865048006899999999876689999999999999999999999999297201452-324451247899 Q ss_pred HHHHHHCCCCCCCCCCEEECCHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCEEECCCCCCCCCC Q ss_conf 99874114320128928752200245432246754666643210222210123512666337766631414677667643 Q gi|254780573|r 136 IQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGW 215 (461) Q Consensus 136 i~~L~~~g~aY~~~g~VyFdv~~~~~YG~Ls~~~~~~~~~g~r~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGW 215 (461) T Consensus 268 i~~L~~~g~~~e~dGA~~~~~~~~---g~------------------------~~~vl~k--sDGt~tY~t~-------- 310 (562) T PRK12451 268 IGILEEHDLLEESEGALVVNLEEE---GM------------------------PPCLIRK--SDGATIYATR-------- 310 (562) T ss_pred HHHHHHCCCEEECCCCEECCCCHH---CC------------------------CCEEEEC--CCCCCEEECC-------- T ss_conf 999997797894799743587131---27------------------------8638991--8997213166-------- Q ss_pred CCHHHHHH--HHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCHHHEECC--CEEEEEECCCCCCCCCCCCHHHH Q ss_conf 32047777--875298414874135666687513668888640875301210034--32576420223323321408998 Q gi|254780573|r 216 HIECSAMS--SHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHN--GFLNLEGRKMSKSNGNFITINEL 291 (461) Q Consensus 216 HiECsam~--~~~lg~~~DIH~GG~DL~FPHHENEiAQs~a~~~~~~~a~yWlH~--G~l~i~geKMSKSlGN~iti~dl 291 (461) T Consensus 311 --DiA~~~~k~~~~~~d~~I~V~gadh~~-~~~rv~a~l~~l-g~-~~~~~~~hv~~~~v~~~g~kMStR~G~~v~l~dl 385 (562) T PRK12451 311 --DLTAALYRQNTFGFDKALYVVGPEQSL-HFNQFFTVLKKL-GY-TWVDGMEHVPFGFILKDGKKMSTRKGRVILLEEV 385 (562) T ss_pred --HHHHHHHHHHHCCCCEEEEEECCCHHH-HHHHHHHHHHHC-CC-CCCCCEEEEEEEEEECCCCCEEECCCCEEEHHHH T ss_conf --478999998730997589995674767-999999999974-99-7545506898899874886302057875689999 Q ss_pred HCCCCCC------------------CCCCCHHHHHHHHHCCCCCCCCCCCHHHHH Q ss_conf 5025334------------------557779999999842566432114503468 Q gi|254780573|r 292 LETKKFG------------------GRSWPAPVIRLAMLMTHYREPIDFTVQRLT 328 (461) Q Consensus 292 L~~~~~~------------------~k~y~p~viR~~lLsshYRspLdfS~e~L~ 328 (461) T Consensus 386 l~e~~~~a~~~~~~r~~~~~~~~~ia~~VG~~Airy~~L~~~~~~~~~FD~d~~~ 440 (562) T PRK12451 386 LEEAIELAKQNIEEKNPNLKQKEEVAKQVGVGAVIFHDLKNERMHNIEFSLENML 440 (562) T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHH T ss_conf 9999999999987527771328999998531130134443167877767899997 |
|
| >PRK01611 argS arginyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=2e-12 Score=109.13 Aligned_cols=267 Identities=15% Similarity=0.142 Sum_probs=164.6 Q ss_pred CCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC------------------------C Q ss_conf 4798479996167888844411127999999999999970799845799605523------------------------3 Q gi|254780573|r 21 IDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDI------------------------D 76 (461) Q Consensus 21 ~~~~~v~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDi------------------------d 76 (461) T Consensus 115 ~~~~kv~VEf~S~Np~kplHvGH~R~aiiGdslaril~~~G~~--V~r~~yvnD~G~Qi~~l~~~~~~~~~~~~~~~~l~ 192 (570) T PRK01611 115 GKGKKVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAGYD--VTREYYVNDAGTQIGMLAASLELEEAAAKGLSDLE 192 (570) T ss_pred CCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC--EEEEEEECCCCHHHHHHHHHHHHHCCCCCCCHHHH T ss_conf 8997799984489999986233588789999999999983990--79999978742799999999999604888706679 Q ss_pred -----------HHHHHHHH------HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH-H-HHHHHHH Q ss_conf -----------88899998------708986448848999999999999987762685410001235677-7-7899999 Q gi|254780573|r 77 -----------DKIIERAR------QEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHI-P-QMIYLIQ 137 (461) Q Consensus 77 -----------Dkii~~a~------~~~~~~~~~~~~~~~a~~~~~~f~~d~~~L~v~~p~~~pr~t~~i-~-~~i~~i~ 137 (461) T Consensus 193 ~~Y~~~~~~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~~~~~~l~~~~~~l~~l~I~f-D~~~~Es~~~~~~~i~~v~~ 271 (570) T PRK01611 193 RRYREAKKEPDEDPEEYAGEYIVKLAAPGDEELEELWRKAVDISLDEIKEDLDRLGVKF-DVFFSESSLYNDGKVEEVVE 271 (570) T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCHHHHHHCCCHHHHHH T ss_conf 99999850346585455789999987179888999999999999999999999748764-42126688985774499999 Q ss_pred HHHHCCCCCCCCCCEEECCHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCC Q ss_conf 87411432012892875220024543224675466664321022221012351266633776663141467766764332 Q gi|254780573|r 138 NIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHI 217 (461) Q Consensus 138 ~L~~~g~aY~~~g~VyFdv~~~~~YG~Ls~~~~~~~~~g~r~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHi 217 (461) T Consensus 272 ~L~~~~~~~e~dGa~~~~~~~~g~-------------------------d~~~~vl~ks--DGt~~Y~t~---------- 314 (570) T PRK01611 272 DLKEKGLLYESDGALWVRLTEFGD-------------------------DEKDRVLQKS--DGTYTYFTT---------- 314 (570) T ss_pred HHHHCCCEEECCCCEEEECHHCCC-------------------------CCCCEEEEEC--CCCCEECHH---------- T ss_conf 998679589318968994211067-------------------------7778489915--996000146---------- Q ss_pred HHHHHHHHH---CCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCHHHEECCCEEEE---EECCCCCCCCCCCCHHHH Q ss_conf 047777875---29841487413566668751366888864087530121003432576---420223323321408998 Q gi|254780573|r 218 ECSAMSSHY---LGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL---EGRKMSKSNGNFITINEL 291 (461) Q Consensus 218 ECsam~~~~---lg~~~DIH~GG~DL~FPHHENEiAQs~a~~~~~~~a~yWlH~G~l~i---~geKMSKSlGN~iti~dl 291 (461) T Consensus 315 DiAy~~~K~~~~~d~~I~V~g~dq~~hf~~---l~~~l~~lG~~~~~~~~l~h~~~~lv~~~~~~kMStR~G~~v~L~dl 391 (570) T PRK01611 315 DIAYHLYKFERGFDRVIYVVGADHHGHFKR---LKAALKALGYDPEKLEVLLHQMVGLVRGGEGVKMSTRAGNVVTLDDL 391 (570) T ss_pred HHHHHHHHHHHCCCEEEEEECCCHHHHHHH---HHHHHHHCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCEEEHHHH T ss_conf 899999998517883899945758889999---99999986999633447999998754368676442467874589999 Q ss_pred HCCCCC---------------CCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHH Q ss_conf 502533---------------455777999999984256643211450346877 Q gi|254780573|r 292 LETKKF---------------GGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEA 330 (461) Q Consensus 292 L~~~~~---------------~~k~y~p~viR~~lLsshYRspLdfS~e~L~~A 330 (461) T Consensus 392 ldea~~~a~~~~~~~~e~~~~ia~~Vg~~Airy~~L~~~~~~~~~Fd~d~~l~~ 445 (570) T PRK01611 392 LDEAVERARELVEESEEEKEEIAKAVGIDAVRYFDLSRSRDSDYDFDLDLALSF 445 (570) T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHCHHHHHHHHHCCCCCCCCEECHHHHHHH T ss_conf 999999999876337767889997634104026444068888822268998632 |
|
| >pfam00750 tRNA-synt_1d tRNA synthetases class I (R) | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.6e-12 Score=109.95 Aligned_cols=273 Identities=16% Similarity=0.155 Sum_probs=164.5 Q ss_pred EEECCCCCEEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC----------- Q ss_conf 898889826223304798479996167888844411127999999999999970799845799605523----------- Q gi|254780573|r 7 IYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDI----------- 75 (461) Q Consensus 7 lyntlt~~~~~f~p~~~~~v~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDi----------- 75 (461) T Consensus 2 ~~~~~~~~~~g~~~~k~kkI~vE~~S~Np~kplHvGHlR~aiiGdslarll~~~G~~--V~r~~yvnD~G~Qi~~l~~~~ 79 (345) T pfam00750 2 VTKILAQGGLGSALLENKKVVVEFSSPNPAKPIHVGHLRSTIIGDALSRLLEFLGYD--VVRENYVGDWGTQFGMLIASL 79 (345) T ss_pred HHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCE--EEEEEEECCHHHHHHHHHHHH T ss_conf 677732766798778998899985389999885041015279999999999987995--989987686489999999999 Q ss_pred -----------------------------CHHHHHHHHHCCCCCC-C-CCCHHHHHH-HHHHHHHHHHHHHCCCCCCHHH Q ss_conf -----------------------------3888999987089864-4-884899999-9999999987762685410001 Q gi|254780573|r 76 -----------------------------DDKIIERARQEHPSIP-I-NDAISIITS-KNTQQFVKDTTRLACLAPTHQP 123 (461) Q Consensus 76 -----------------------------dDkii~~a~~~~~~~~-~-~~~~~~~a~-~~~~~f~~d~~~L~v~~p~~~p 123 (461) T Consensus 80 ~~~~~~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~~d~~~~~~~~~~~~~~~~~~l~~l~v~fD~-~~ 158 (345) T pfam00750 80 EAAAKEELTVPMPIQDLEDGYRGIKKDYIAEEIFAKEARNAVVLLQSGDEEFREMWVLLIFDHIKQSLNKIYDDFDV-TL 158 (345) T ss_pred HHHCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHCC-CC T ss_conf 98566654556650566664215668888689999858998745001479999999999999999999996405376-71 Q ss_pred HHHH--HHHHHHHHHHHHHHCCCCCCCCCCEEECCHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCC Q ss_conf 2356--77778999998741143201289287522002454322467546666432102222101235126663377666 Q gi|254780573|r 124 RATN--HIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPME 201 (461) Q Consensus 124 r~t~--~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~~~~YG~Ls~~~~~~~~~g~r~~~~~~K~~p~DFaLWK~~~~~e 201 (461) T Consensus 159 ~Ese~~~~~~v~~vl~~L~~~g~~~e~dGA~~~~~~~~---gd-----------------------~~~~vl~r--sDGt 210 (345) T pfam00750 159 HEGESVYKGRMNDAVKDLKDNGLVYENDGALWLFLTEF---GD-----------------------DKDRVVIK--SDGG 210 (345) T ss_pred CHHHHHHCCHHHHHHHHHHHCCCEEEECCCEEEECCCC---CC-----------------------CCCCEEEE--CCCC T ss_conf 06788844509999999987798897489879942434---78-----------------------77744781--5995 Q ss_pred CEEECCCCCCCCCCCCHHHHH-HHHH--CCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCHHHEECCCE--EEE-EE Q ss_conf 314146776676433204777-7875--29841487413566668751366888864087530121003432--576-42 Q gi|254780573|r 202 PGWESPWGRGRPGWHIECSAM-SSHY--LGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGF--LNL-EG 275 (461) Q Consensus 202 ~~w~spwG~GRPGWHiECsam-~~~~--lg~~~DIH~GG~DL~FPHHENEiAQs~a~~~~~~~a~yWlH~G~--l~i-~g 275 (461) T Consensus 211 ~~Y~t~-----------DiAy~~~K~~~~~~D~~I~V~g~dq~~-h~~~l~~~l~~lg~-~~~~~~~~h~~~g~v~~~dg 277 (345) T pfam00750 211 ALYITT-----------DLAYAKERLEQRGFDLIIYVLGADQHG-HIQRLFAAAAALGY-DPESVEVLHIGFGVVLGKDG 277 (345) T ss_pred EEECHH-----------HHHHHHHHHHCCCCCEEEEECCCCHHH-HHHHHHHHHHHCCC-CCCCCCEEEEEEEEEECCCC T ss_conf 000246-----------899999998725998688864742756-99999999998599-94236178999973876899 Q ss_pred CCCCCCCCCCCCHHHHHCCCCCC-------------------CCCCCHHHHHHHHHCCCCCCCCCCC Q ss_conf 02233233214089985025334-------------------5577799999998425664321145 Q gi|254780573|r 276 RKMSKSNGNFITINELLETKKFG-------------------GRSWPAPVIRLAMLMTHYREPIDFT 323 (461) Q Consensus 276 eKMSKSlGN~iti~dlL~~~~~~-------------------~k~y~p~viR~~lLsshYRspLdfS 323 (461) T Consensus 278 kkMStR~G~~v~l~dLl~ea~~~a~~~~~~~~~~~~~~~~~ia~~Vgi~Airy~~L~~~~~k~i~FD 344 (345) T pfam00750 278 KRMSTRAGNVVTLDDLLDEALERAMDIKEKNRDLTADELEAVATAIGVDAARYADLSSNRDTDYIFD 344 (345) T ss_pred CCCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC T ss_conf 6167788775789999999999999999736689877899999877076765999865889898358 |
Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only arginyl tRNA synthetase. |
| >COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.3e-11 Score=101.53 Aligned_cols=267 Identities=18% Similarity=0.162 Sum_probs=168.2 Q ss_pred CCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC---------------C---------H Q ss_conf 798479996167888844411127999999999999970799845799605523---------------3---------8 Q gi|254780573|r 22 DPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDI---------------D---------D 77 (461) Q Consensus 22 ~~~~v~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDi---------------d---------D 77 (461) T Consensus 115 ~~~kV~iE~sSaNptkplHiGHlR~aiiGDsLaril~~~Gy~--V~r~~yvnD~G~Q~~~l~~~~~~~~~e~~~~~~~~~ 192 (577) T COG0018 115 KGKKVVIEYSSANPTGPLHIGHLRNAIIGDSLARILEFLGYD--VTRENYVNDWGTQIGMLALSYEKRGREALGLTPEPD 192 (577) T ss_pred CCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC--EEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCH T ss_conf 998799987479999985233235368899999999983997--667866785799999999999995541013777720 Q ss_pred --------HHHHHHHHCC----------------CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHH Q ss_conf --------8899998708----------------98644884899999999999998776268541000-1235677778 Q gi|254780573|r 78 --------KIIERARQEH----------------PSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ-PRATNHIPQM 132 (461) Q Consensus 78 --------kii~~a~~~~----------------~~~~~~~~~~~~a~~~~~~f~~d~~~L~v~~p~~~-pr~t~~i~~~ 132 (461) T Consensus 193 ~~lg~~y~~i~~~~~~~~~~~~~~~~~~~~k~e~~d~~~-~lw~~~v~~~l~~~k~~l~~l~V~fD~~~~E~e~~~~~~~ 271 (577) T COG0018 193 GYLGEYYVKIAKDLEEDPGNDEEEAREEVEKLESGDEEA-ELWRKFVDLSLEGIKETLDRLGVKFDVYDSEGESFYNGKV 271 (577) T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHH-HHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHCCCH T ss_conf 688999999999997484612678899999886477578-9999999999999999999929530013234265526649 Q ss_pred HHHHHHHHHCCCCCCCCCCEEECCHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCEEECCCCCCC Q ss_conf 99999874114320128928752200245432246754666643210222210123512666337766631414677667 Q gi|254780573|r 133 IYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGR 212 (461) Q Consensus 133 i~~i~~L~~~g~aY~~~g~VyFdv~~~~~YG~Ls~~~~~~~~~g~r~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GR 212 (461) T Consensus 272 ~~vv~~L~~~~~~~e~~GA~~vdl~~~~~~gd-----------------------~~~~vl~KS--DGt~lY~t~----- 321 (577) T COG0018 272 EKVVEDLEEKGLLYEDDGALVVDLLKFKKFGD-----------------------DKDRVLQKS--DGTYLYFTR----- 321 (577) T ss_pred HHHHHHHHHCCCEEEECCEEEEEHHHHHHCCC-----------------------CCCEEEEEC--CCCEEEEHH----- T ss_conf 99999998669776009958986432111168-----------------------777289976--997054253----- Q ss_pred CCCCCHHHHHHHHH-CCCCEEEEEECCCCCCCCCHHHHHHHHHH---CCCCCCH-HHEECCCEEEE---EECCCCCCCCC Q ss_conf 64332047777875-29841487413566668751366888864---0875301-21003432576---42022332332 Q gi|254780573|r 213 PGWHIECSAMSSHY-LGKVFDIHGGGLDLIFPHHENEIAQSCCA---DRIEKTA-NIWIHNGFLNL---EGRKMSKSNGN 284 (461) Q Consensus 213 PGWHiECsam~~~~-lg~~~DIH~GG~DL~FPHHENEiAQs~a~---~~~~~~a-~yWlH~G~l~i---~geKMSKSlGN 284 (461) T Consensus 322 -----DIAy~~~K~~~~~d~~IyV~gad-----q~~~~~ql~~~l~~~g~~-~~~~~~~h~~~~l~~~~~g~kmStR~G~ 390 (577) T COG0018 322 -----DIAYHLYKFERGFDKLIYVLGAD-----QHGHFKQLKAVLELLGYG-PDKEVLLHQGVGLVRGGEGVKMSTRAGN 390 (577) T ss_pred -----HHHHHHHHHHCCCCEEEEEECCC-----CHHHHHHHHHHHHHHCCC-CCCCEEEEEEEEEEECCCCCCCCCCCCC T ss_conf -----89999999736998899996786-----244999999999984699-8656189997752577877634224886 Q ss_pred CCCHHHHHCCCCCCC---------------CCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHH Q ss_conf 140899850253345---------------577799999998425664321145034687776 Q gi|254780573|r 285 FITINELLETKKFGG---------------RSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEI 332 (461) Q Consensus 285 ~iti~dlL~~~~~~~---------------k~y~p~viR~~lLsshYRspLdfS~e~L~~A~~ 332 (461) T Consensus 391 ~vtl~dllde~~era~~~~~~~~~~~~~iA~~vgi~Avry~~l~~~~~~~~~Fd~d~~lsfeg 453 (577) T COG0018 391 VVTLDDLLDEAGERAPEEMEEKEEKNEEIAEVVGIDAVRYADLSRSRDKDYVFDWDKALSFEG 453 (577) T ss_pred EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHCCC T ss_conf 578999999998876667654321157777775240678998862899994753999974459 |
|
| >COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.9e-10 Score=92.76 Aligned_cols=272 Identities=20% Similarity=0.199 Sum_probs=147.2 Q ss_pred EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCH--H----HH-HHHHHCCCC-------CCC Q ss_conf 999616788884441112799999999999997079984579960552338--8----89-999870898-------644 Q gi|254780573|r 27 RMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDD--K----II-ERARQEHPS-------IPI 92 (461) Q Consensus 27 ~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidD--k----ii-~~a~~~~~~-------~~~ 92 (461) T Consensus 21 ~~v~tGisPSG~~HIGn~rEv~t~d~V~ralr~~g~~--~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPdP~ 98 (521) T COG1384 21 YVVATGISPSGLIHIGNFREVLTADAVRRALRDRGDE--VRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPDPF 98 (521) T ss_pred EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC--EEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCC T ss_conf 8983476898873214289898999999999974886--57999814875101279999986899987099643489976 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH----------------HHHHHHHHHHHHHHCCCCCCCCCCEE-EC Q ss_conf 88489999999999999877626854100012356----------------77778999998741143201289287-52 Q gi|254780573|r 93 NDAISIITSKNTQQFVKDTTRLACLAPTHQPRATN----------------HIPQMIYLIQNIILHGHAYEANNEII-FD 155 (461) Q Consensus 93 ~~~~~~~a~~~~~~f~~d~~~L~v~~p~~~pr~t~----------------~i~~~i~~i~~L~~~g~aY~~~g~Vy-Fd 155 (461) T Consensus 99 G-~~~Sya~hf~~~f~~~l~~~Gi~~-E~-~s~se~Yk~G~~~~~i~~ale~rdeI~~il~~~~~~----~~~e~~~P~~ 171 (521) T COG1384 99 G-CCDSYAEHFLRPFEEFLDEFGIEV-EF-VSATELYKSGLYDEAIRIALERRDEIMEILNEYRGR----ELEEDWSPFM 171 (521) T ss_pred C-CCCHHHHHHHHHHHHHHHHCCCCE-EE-EEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCC----CCCCCCEECC T ss_conf 6-533599999999999998649864-99-876775644558999999986579999999985187----6667723022 Q ss_pred CHHCCCCCCCCCCCHHHHHHHHHCCC--CCCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCEEE Q ss_conf 20024543224675466664321022--2210123512666337766631414677667643320477778752984148 Q gi|254780573|r 156 TSSIPNYGSFSRRKIDEQKMGTRVPE--KYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDI 233 (461) Q Consensus 156 v~~~~~YG~Ls~~~~~~~~~g~r~~~--~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~DI 233 (461) T Consensus 172 pi-C~kcGri~~t~v~~~d~~~~v~Y~Ce~Gh~g~v~ir----~g~~KL~WRvdWp------------~RW~~lg--Vd~ 232 (521) T COG1384 172 PI-CEKCGRILTTPVIEWDGEGTVEYRCECGHEGEVDIR----GGEGKLPWRVDWP------------MRWAALG--VDF 232 (521) T ss_pred CC-CCCCCCCCEEEEEEECCCCEEEEEECCCCCCEEECC----CCCCCCCCCCCCC------------CHHHCCC--CCC T ss_conf 25-655587030688996378449998668861046223----3676443576750------------0100008--310 Q ss_pred EEECCCCCCCCCH----HHHHHHHHHCCCCCCHHHEECCCEEEEEE-CCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHH Q ss_conf 7413566668751----36688886408753012100343257642-022332332140899850253345577799999 Q gi|254780573|r 234 HGGGLDLIFPHHE----NEIAQSCCADRIEKTANIWIHNGFLNLEG-RKMSKSNGNFITINELLETKKFGGRSWPAPVIR 308 (461) Q Consensus 234 H~GG~DL~FPHHE----NEiAQs~a~~~~~~~a~yWlH~G~l~i~g-eKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR 308 (461) T Consensus 233 EPfGKDH~a~ggSydtg~~I~--~ei~g~~pP~~~~Y--E~i~lkg~~~mSsSkG~~i~~~dwle-------v~~pE~lr 301 (521) T COG1384 233 EPFGKDHAAAGGSYDTGKRIA--REIFGYEPPVPFVY--EWILLKGGGKMSSSKGNVISLSDWLE-------VAPPEVLR 301 (521) T ss_pred CCCCCCCCCCCCCHHHHHHHH--HHHCCCCCCCCCCE--EEEEECCCCCCCCCCCCEECHHHHHH-------HCCHHHEE T ss_conf 357853134567637899999--98649999977755--88985488665568785785999987-------53984733 Q ss_pred HHHHCCCCCCCCCCCHHH-HHHHHHHHHHC Q ss_conf 998425664321145034-68777643210 Q gi|254780573|r 309 LAMLMTHYREPIDFTVQR-LTEAEILLSKW 337 (461) Q Consensus 309 ~~lLsshYRspLdfS~e~-L~~A~~~l~kl 337 (461) T Consensus 302 y~~~r~kP~r~~~~d~~~~il~lvDEydr~ 331 (521) T COG1384 302 YLIARTKPNRHIDFDFDLGILKLVDEYDRL 331 (521) T ss_pred EEEEECCCCCCEECCCCCCHHHHHHHHHHH T ss_conf 235405887443317887744778999999 |
|
| >PRK00750 lysK lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.5e-09 Score=88.56 Aligned_cols=263 Identities=19% Similarity=0.201 Sum_probs=142.4 Q ss_pred EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH-CCCCCEEEEECCCCCCH--HH----HH-HHHHCC-------CCCC Q ss_conf 9996167888844411127999999999999970-79984579960552338--88----99-998708-------9864 Q gi|254780573|r 27 RMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYY-YGEKCVTYVRNITDIDD--KI----IE-RARQEH-------PSIP 91 (461) Q Consensus 27 ~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~-~~~~~V~~v~niTDidD--ki----i~-~a~~~~-------~~~~ 91 (461) T Consensus 31 vv~~tG~~pSG~~HiG~~~Ev~~~~~V~~al~~~~g~~--~~~i~~~Dd~D~lRkvp~~~p~~e~~~~~lg~Pl~~iPdP 108 (513) T PRK00750 31 VLFETGYGPSGLPHIGTFGEVARTTMVRRALRDLTGIK--TRLIYFSDDMDGLRKVPDNVPNQEMLAEHLGKPLTSVPDP 108 (513) T ss_pred EEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCC T ss_conf 99936868998862304522666999999999845996--6899985177654346889998499998749966407998 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH---------HHHHHH---HHHHHHHCCCCCCCCCCEEECCHHC Q ss_conf 4884899999999999998776268541000123567---------777899---9998741143201289287522002 Q gi|254780573|r 92 INDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNH---------IPQMIY---LIQNIILHGHAYEANNEIIFDTSSI 159 (461) Q Consensus 92 ~~~~~~~~a~~~~~~f~~d~~~L~v~~p~~~pr~t~~---------i~~~i~---~i~~L~~~g~aY~~~g~VyFdv~~~ 159 (461) T Consensus 109 ~g~-~~Sya~h~~~~~~~~l~~~gi~~-e~-~s~te~Y~sG~f~~~i~~~l~~~~~I~~Il~~~~~~~~~-~~~~P~~pi 184 (513) T PRK00750 109 FGT-HESYAEHNNARLREFLDKFGFEY-EF-ISATECYKSGRFDEALLKALEKYDEIMAILLPTLGEERQ-ATYSPFLPI 184 (513) T ss_pred CCC-CCCHHHHHHHHHHHHHHHCCCCE-EE-EEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCEEEEEEE T ss_conf 887-57699999999999999839833-99-767876644866999999998599999999984386667-871477876 Q ss_pred -CCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCEEECCC-CCCCCCCCCHHHHHHHHHCCCCEEEEEEC Q ss_conf -4543224675466664321022221012351266633776663141467-76676433204777787529841487413 Q gi|254780573|r 160 -PNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPW-GRGRPGWHIECSAMSSHYLGKVFDIHGGG 237 (461) Q Consensus 160 -~~YG~Ls~~~~~~~~~g~r~~~~~~K~~p~DFaLWK~~~~~e~~w~spw-G~GRPGWHiECsam~~~~lg~~~DIH~GG 237 (461) T Consensus 185 C~~cGkv~~t~v~~~d------------~~~~~v~y~~-~cG~~~~~~~~~g~~KL~WrvDW-~mRW~~~~--Vd~Ep~G 248 (513) T PRK00750 185 CPKCGKVLQVPVISVD------------ADAGTITYDD-ECGHEGEVPVTGGHVKLQWKVDW-PMRWAALG--VDFEPAG 248 (513) T ss_pred CCCCCCEEEEEEEEEE------------CCCCEEEEEC-CCCCEEEECCCCCCCCCCCCCCC-HHHHHHHC--CCCCCCC T ss_conf 1888955204689997------------7998899984-99987876366885434662565-54411106--4303465 Q ss_pred CCCCCCCCH--HHHHHHHHHCCCCCCHHHEECCCEE-EEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHH-HHHHHHHC Q ss_conf 566668751--3668888640875301210034325-7642022332332140899850253345577799-99999842 Q gi|254780573|r 238 LDLIFPHHE--NEIAQSCCADRIEKTANIWIHNGFL-NLEGRKMSKSNGNFITINELLETKKFGGRSWPAP-VIRLAMLM 313 (461) Q Consensus 238 ~DL~FPHHE--NEiAQs~a~~~~~~~a~yWlH~G~l-~i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~-viR~~lLs 313 (461) T Consensus 249 KDh~~-S~~~~~~I~--~i~g~-~pP~~--~~YE~fLd~~G~KmSsSkGngit~~ewL-------~~~~PEsl~rfm~~~ 315 (513) T PRK00750 249 KDHIS-SYDTSSRIC--EILGG-EPPEG--FMYELFLDGKGQKISKSKGNGISIEDWL-------EYAPPESLARFMYAR 315 (513) T ss_pred CCCCC-CHHHHHHHH--HHHCC-CCCCC--CCEEEEECCCCCEECCCCCCCCCHHHHH-------HHCCHHHHHHHHHHC T ss_conf 11212-076799999--98389-99999--8722798379866305689723899999-------755999999999718 Q ss_pred CCCCCCCCCCH Q ss_conf 56643211450 Q gi|254780573|r 314 THYREPIDFTV 324 (461) Q Consensus 314 shYRspLdfS~ 324 (461) T Consensus 316 pkpaK~l~fd~ 326 (513) T PRK00750 316 PKPAKRLYFDV 326 (513) T ss_pred CCCCCCCCHHH T ss_conf 89884015656 |
|
| >PRK04156 gltX glutamyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.3e-09 Score=89.13 Aligned_cols=273 Identities=18% Similarity=0.223 Sum_probs=167.6 Q ss_pred EEEEC---CCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCC Q ss_conf 23304---798479996167888844411127999999999999970799845799605523388899998708986448 Q gi|254780573|r 17 EFQAI---DPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPIN 93 (461) Q Consensus 17 ~f~p~---~~~~v~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~ 93 (461) T Consensus 89 ~lp~l~~~~~gkV~tRF-aP~P~G~LHiGhar~al~N~~~Ak~---~~G----~~iLR~eDTdp~~-~r----------- 148 (566) T PRK04156 89 ELPPLLPNVKGKVVMRF-APNPSGPLHLGHARAAILNDEYAKR---YGG----KFILRFEDTDPRT-KR----------- 148 (566) T ss_pred CCCCCCCCCCCEEEEEE-CCCCCCCCCHHHHHHHHHHHHHHHH---CCC----EEEEEECCCCCCC-CC----------- T ss_conf 79898866688389952-8699987618999999996999998---099----8999965888332-55----------- Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHCCCCCCCC---CCCH Q ss_conf 8489999999999999877626854100012356777789999987411432012892875220024543224---6754 Q gi|254780573|r 94 DAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFS---RRKI 170 (461) Q Consensus 94 ~~~~~~a~~~~~~f~~d~~~L~v~~p~~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~~~~YG~Ls---~~~~ 170 (461) T Consensus 149 -----~~~e~~~~I~~dl~WLG~~~-de~~~qSdr~~~y~~~a~~Li~~G~AY~c~c~~e-e~~~~r~~~~~~p~R~~~~ 221 (566) T PRK04156 149 -----PDPEAYDMIREDLKWLGVKP-DEVVIQSDRLEIYYEYARKLIEMGGAYVCTCDPE-EFKELKDKGEACPHRDQSP 221 (566) T ss_pred -----CCHHHHHHHHHHHHHHCCCC-CCCEEHHHHHHHHHHHHHHHHHCCCEEECCCCHH-HHHHHHHCCCCCCCCCCCH T ss_conf -----63789999999999829997-8016657619999999999998799277789999-9999986587687668997 Q ss_pred -------HHHHHHH--------HCCCCCCCC--CCCCEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCEEE Q ss_conf -------6666432--------102222101--23512666337766631414677667643320477778752984148 Q gi|254780573|r 171 -------DEQKMGT--------RVPEKYHKK--NPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDI 233 (461) Q Consensus 171 -------~~~~~g~--------r~~~~~~K~--~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~DI 233 (461) T Consensus 222 e~nl~~~~~m~~g~~~~g~~vlR~K~d~~~~n~~~rD~v~~Ri~~~~H~r~g~k~-~v~PtYdfa~~-idD~l~gITHvi 299 (566) T PRK04156 222 EENLELWEKMLDGEYKEGEAVVRIKTDLNHPNPAVRDWVAFRIIDTPHPRTGDKY-RVWPLMNFAVA-VDDHLLGVTHVL 299 (566) T ss_pred HHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCC-CCCCCCCEEEE-EEHHHCCCCCEE T ss_conf 8888899876514566787699997226789863223556785167776357754-44644240024-511104787156 Q ss_pred EEECCCCCCCCCHHHHHH---HHHHCCCCCCHHHEECCCEEEEEECCCCCCCCCCCCHHHHHCCCC-------------- Q ss_conf 741356666875136688---886408753012100343257642022332332140899850253-------------- Q gi|254780573|r 234 HGGGLDLIFPHHENEIAQ---SCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK-------------- 296 (461) Q Consensus 234 H~GG~DL~FPHHENEiAQ---s~a~~~~~~~a~yWlH~G~l~i~geKMSKSlGN~iti~dlL~~~~-------------- 296 (461) T Consensus 300 --Rg~e~----~~~t~~q~~ly~~lg~~~P---~~~~fgRln~~~~vlSKr-----kl~~lVe~g~v~GWDDPRlpTl~g 365 (566) T PRK04156 300 --RGKDH----IVNTEKQRYIYKYFGWEYP---EYIHYGRLKIEGFVLSTS-----KIRKGIESGEYSGWDDPRLPTLRA 365 (566) T ss_pred --ECCCC----CCCHHHHHHHHHHCCCCCC---EEEEEEEEECCCEEEEHH-----HHHHHHHCCCCCCCCCCCHHHHHH T ss_conf --44301----1344778999997298775---057776775153131088-----999998629888887884277899 Q ss_pred CCCCCCCHHHHHHHHHCCCCC-CCCCCCHHHHHHHHH Q ss_conf 345577799999998425664-321145034687776 Q gi|254780573|r 297 FGGRSWPAPVIRLAMLMTHYR-EPIDFTVQRLTEAEI 332 (461) Q Consensus 297 ~~~k~y~p~viR~~lLsshYR-spLdfS~e~L~~A~~ 332 (461) T Consensus 366 lrRRG~~peAir~f~~~iGvsk~d~~i~~~~L~a~nR 402 (566) T PRK04156 366 LRRRGILPEAIRELIIEVGLKETDATISWENLYALNR 402 (566) T ss_pred HHHCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH T ss_conf 9867999999999999968554453225999999999 |
|
| >cd00807 Gln_GluRS_non_core Glutaminyl-tRNA synthetase (GlnRS) and non-descriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.4e-10 Score=92.41 Aligned_cols=205 Identities=17% Similarity=0.158 Sum_probs=134.9 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 67888844411127999999999999970799845799605523388899998708986448848999999999999987 Q gi|254780573|r 32 GPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDT 111 (461) Q Consensus 32 GpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~~~~f~~d~ 111 (461) T Consensus 7 APsPtG~lHiG~artal~n~l~Ar~---~~G----~~iLRiEDTD~---~r~~----------------~e~~~~I~~~L 60 (238) T cd00807 7 PPEPNGYLHIGHAKAAILNFEYAKR---YGG----KLILRFDDTNP---KKED----------------EEAYDSILEDL 60 (238) T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHH---HCC----EEEEEECCCCC---CCCC----------------CHHHHHHHHHH T ss_conf 8898986438999999999999998---299----69998677898---7676----------------16899999999 Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCE Q ss_conf 76268541000123567777899999874114320128928752200245432246754666643210222210123512 Q gi|254780573|r 112 TRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADF 191 (461) Q Consensus 112 ~~L~v~~p~~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~~~~YG~Ls~~~~~~~~~g~r~~~~~~K~~p~DF 191 (461) T Consensus 61 ~wLGl~~-De~~~QS~r~~~y~~~a~~Li~~G~AY~h-----~-----------------------r~g---~-----k~ 103 (238) T cd00807 61 EWLGIKP-DEITYASDYFDLYYEYAEKLIKMGKAYVH-----P-----------------------RTG---D-----KY 103 (238) T ss_pred HHHCCCC-CCCEECCCCHHHHHHHHHHHHHCCCCCCC-----C-----------------------CCC---C-----CC T ss_conf 9848999-93156366799999999999987998745-----4-----------------------469---9-----75 Q ss_pred EEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCHHHEECCCEE Q ss_conf 66633776663141467766764332047777875298414874135666687513668888640875301210034325 Q gi|254780573|r 192 ILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFL 271 (461) Q Consensus 192 aLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~FPHHENEiAQs~a~~~~~~~a~yWlH~G~l 271 (461) T Consensus 104 ~------------------v~PtY~fa~vV-DD~~~g--ITHViRG~D~l-~nt~~q~~l~~aLg~~~P---~~~h~~~l 158 (238) T cd00807 104 C------------------VYPTYDFAHPI-DDSLEG--ITHSLRTKEFQ-DRREKYDWLYEYLGWRKP---EQIEFGRL 158 (238) T ss_pred E------------------ECCCCCCCEEE-CCCCCC--CCEEEECCCCC-CCCHHHHHHHHHCCCCCC---CEEEEEEE T ss_conf 0------------------14553322162-164578--87688762101-387999999998499998---67887548 Q ss_pred EEEECCCCCCCCC---------------CCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCC-CCCCCHHHHHHH Q ss_conf 7642022332332---------------1408998502533455777999999984256643-211450346877 Q gi|254780573|r 272 NLEGRKMSKSNGN---------------FITINELLETKKFGGRSWPAPVIRLAMLMTHYRE-PIDFTVQRLTEA 330 (461) Q Consensus 272 ~i~geKMSKSlGN---------------~iti~dlL~~~~~~~k~y~p~viR~~lLsshYRs-pLdfS~e~L~~A 330 (461) T Consensus 159 ~~~~~klSKR~~~~~i~~g~v~gwdDprl~Tl~~~r------r~G~~peAi~n~l~~lG~s~~d~~~~~~~le~~ 227 (238) T cd00807 159 NLEYTVLSKRKLKKLVEEGEVEGWDDPRLPTLRGLR------RRGITPEAIREFILEVGVSKADVTISWAKLEAI 227 (238) T ss_pred CCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHH------HCCCCHHHHHHHHHHHCCCCCCCEECHHHHHHH T ss_conf 799970546151540245863677675406599999------879989999999999789978867639999998 |
These enzymes attach Gln or Glu, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-descriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. |
| >cd00418 GlxRS_core Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.2e-10 Score=90.88 Aligned_cols=194 Identities=19% Similarity=0.287 Sum_probs=135.1 Q ss_pred ECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 16788884441112799999999999997079984579960552338889999870898644884899999999999998 Q gi|254780573|r 31 CGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 (461) Q Consensus 31 CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~~~~f~~d 110 (461) T Consensus 6 FAPsPtG~LHiG~ar~al~n~~~Ak~---~~G----~~~LRieDTD~---~r~----------------~~e~~~~I~~d 59 (223) T cd00418 6 FAPSPTGYLHIGHARAALLNYLYAKK---YGG----KFILRFDDTDP---ERE----------------VEEAEDSILED 59 (223) T ss_pred ECCCCCCCCCHHHHHHHHHHHHHHHH---HCC----EEEEEECCCCC---CCC----------------HHHHHHHHHHH T ss_conf 08898985428999999999999998---599----89997236886---401----------------88899999999 Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC Q ss_conf 77626854100012356777789999987411432012892875220024543224675466664321022221012351 Q gi|254780573|r 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPAD 190 (461) Q Consensus 111 ~~~L~v~~p~~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~~~~YG~Ls~~~~~~~~~g~r~~~~~~K~~p~D 190 (461) T Consensus 60 L~wLGl~~d~~~~~QS~r~~~y~~~~~~Li~~G----------------------------------------------- 92 (223) T cd00418 60 LKWLGIKWDEGPYYQSDRFDIYYEYAEKLIEEG----------------------------------------------- 92 (223) T ss_pred HHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHCC----------------------------------------------- T ss_conf 999189999868538758999999999997569----------------------------------------------- Q ss_pred EEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCHHHEECCCE Q ss_conf 26663377666314146776676433204777787529841487413566668751366888864087530121003432 Q gi|254780573|r 191 FILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGF 270 (461) Q Consensus 191 FaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~FPHHENEiAQs~a~~~~~~~a~yWlH~G~ 270 (461) T Consensus 93 --------------------~~PtY~fa~v-VDD~~~g--ITHViRG~D~-~~~t~~q~~l~~aLg~~~P---~~~H~p~ 145 (223) T cd00418 93 --------------------GYPTYDFAVV-VDDHLMG--ITHVLRGEEH-LDNTPKQIWLYEALGWEPP---VFAHFGR 145 (223) T ss_pred --------------------CCCCEEEEEE-ECCCCCC--CCEEECCHHH-HHCCHHHHHHHHHCCCCCC---EEEEECC T ss_conf --------------------9814010258-5376578--8756546277-6467999999997099997---2898620 Q ss_pred EEEE-ECCCCCCCCC---------------CCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCC-CCCCCHHHHHHH Q ss_conf 5764-2022332332---------------1408998502533455777999999984256643-211450346877 Q gi|254780573|r 271 LNLE-GRKMSKSNGN---------------FITINELLETKKFGGRSWPAPVIRLAMLMTHYRE-PIDFTVQRLTEA 330 (461) Q Consensus 271 l~i~-geKMSKSlGN---------------~iti~dlL~~~~~~~k~y~p~viR~~lLsshYRs-pLdfS~e~L~~A 330 (461) T Consensus 146 l~~~~g~kLSKR~~~~~i~~~~~~gwdDprl~tl~~~r~------~G~~peai~n~~~~lG~s~~~~~~~~~~l~~~ 216 (223) T cd00418 146 LNNEDGTKLSKRKLKKLVEEGIVEGWDDPRLPTLRGLRR------RGYLPEALRNFIALLGWSKSDATFDWEKLEAL 216 (223) T ss_pred EECCCCCCCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHH------CCCCHHHHHHHHHHHCCCCCCCEECHHHHHHH T ss_conf 765888714020002104557767887887103999998------69989999999999589987874669999999 |
These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-descriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The descriminating form of GluRS differs from GlnRS and the non-descriminating form of GluRS in their C-terminal anti-codon binding domains. |
| >TIGR00422 valS valyl-tRNA synthetase; InterPro: IPR002303 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.2e-11 Score=100.57 Aligned_cols=300 Identities=21% Similarity=0.264 Sum_probs=189.0 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC-----CHHHHHHHHHC---CCCCC-CCC-----CHHH Q ss_conf 7888844411127999999999999970799845799605523-----38889999870---89864-488-----4899 Q gi|254780573|r 33 PTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDI-----DDKIIERARQE---HPSIP-IND-----AISI 98 (461) Q Consensus 33 pTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDi-----dDkii~~a~~~---~~~~~-~~~-----~~~~ 98 (461) T Consensus 46 PNvTG~LH~GHAl~~~l~D~l~RykRM~G~~--vLw~~G-~DHAGIATQ~~vE~~~~~~~ikgK~k~D~gRe~F~~~~~e 122 (970) T TIGR00422 46 PNVTGSLHIGHALNWSLQDILARYKRMKGYN--VLWLPG-TDHAGIATQVKVEKKLKAEEIKGKTKHDLGREEFVEKIWE 122 (970) T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC--CCCCCC-CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH T ss_conf 5855551166899999999999854217871--257888-6657632468999998762257887787886899999999 Q ss_pred HHHHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCH--------------- Q ss_conf 999999999998776268541------00012356777789999987411432012892875220--------------- Q gi|254780573|r 99 ITSKNTQQFVKDTTRLACLAP------THQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTS--------------- 157 (461) Q Consensus 99 ~a~~~~~~f~~d~~~L~v~~p------~~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~--------------- 157 (461) T Consensus 123 wk~e~~~~I~~Q~~rLG~S~DWsrE~FTmd~~l~~~V~--~~Fv~-LY~~GLIYRg~~lVNWdpk~~TAiSd~EVenkey 199 (970) T TIGR00422 123 WKEESGGTIKNQIKRLGVSLDWSRERFTMDEGLSKAVK--EAFVR-LYEKGLIYRGEYLVNWDPKLNTAISDIEVENKEY 199 (970) T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHHHHHHH--HHHHH-HHHCCCEEECCCCEEEECCCCCHHHHHHHHCCCC T ss_conf 99887799999999808850235004544888888999--99998-8554861543611372054463102333321113 Q ss_pred ------------------------------------------------HCCCC-CCCCCCCHH----------------H Q ss_conf ------------------------------------------------02454-322467546----------------6 Q gi|254780573|r 158 ------------------------------------------------SIPNY-GSFSRRKID----------------E 172 (461) Q Consensus 158 ------------------------------------------------~~~~Y-G~Ls~~~~~----------------~ 172 (461) T Consensus 200 ker~~~~L~y~~Ypla~~~~~~~Gkd~l~vATTRPETm~gDtAvaVhP~DeRYYk~L~GK~v~~PL~~r~ipiiaDe~VD 279 (970) T TIGR00422 200 KERVKGKLYYIRYPLANGSKTADGKDYLVVATTRPETMFGDTAVAVHPEDERYYKHLIGKKVILPLTGRKIPIIADEYVD 279 (970) T ss_pred CCCCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCHHHHHCEEEEECCCCCHHHHHHCCCEEEECCCCCEEEEECCCCCC T ss_conf 12226654515654348875423552079972672256428288767897045785549889724567684376177546 Q ss_pred HHHHHHC-CCCCCCCCCCCEEEEECCCC-C--------------C--------------C-------------------- Q ss_conf 6643210-22221012351266633776-6--------------6--------------3-------------------- Q gi|254780573|r 173 QKMGTRV-PEKYHKKNPADFILWKRSTP-M--------------E--------------P-------------------- 202 (461) Q Consensus 173 ~~~g~r~-~~~~~K~~p~DFaLWK~~~~-~--------------e--------------~-------------------- 202 (461) T Consensus 280 ~EFGTG~VKvTP-AHD~ND~~~g~RH~LLe~i~~l~~dG~Lne~a~~~~tG~~~~Y~iP~~y~GL~~~eAR~kiv~~L~~ 358 (970) T TIGR00422 280 MEFGTGAVKVTP-AHDFNDYEVGKRHNLLEFINILDEDGLLNENAEVIDTGKEDVYAIPGEYQGLERFEARKKIVEDLKE 358 (970) T ss_pred CCCCCCEEEEEC-CCCCCCHHHCCEECCCCHHHHCCCCCCCCCEECEEECCCCCCCCCCHHCCCCCHHHHHHHHHHHHHH T ss_conf 241751277608-7497760013412114143331799750110011007772331065220588889999999999986 Q ss_pred ----------------EEEC-----------------------------------------------------C------ Q ss_conf ----------------1414-----------------------------------------------------6------ Q gi|254780573|r 203 ----------------GWES-----------------------------------------------------P------ 207 (461) Q Consensus 203 ----------------~w~s-----------------------------------------------------p------ 207 (461) T Consensus 359 ~glL~k~~p~~~~VG~c~Rsg~vvEP~ls~QWFV~~~~La~~a~~~~~~~g~~~fvP~~~~~~y~~W~~~~~WDWCISRQ 438 (970) T TIGR00422 359 EGLLVKIEPHTHNVGHCERSGTVVEPLLSKQWFVKVEKLADKALEAAEEDGEIKFVPKRFEKRYLNWLRNIRWDWCISRQ 438 (970) T ss_pred CCCCCCCCEECCCCCEECCCCCEEECCCCCCCEECHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHCCCCCEEECC T ss_conf 68800111000345621478934304269986217177789999998545883360216788999999638888133010 Q ss_pred --CCCCCCCCC---------CHHHHHH----------HHHCCC-CEEEEEECC-CCC---------------------CC Q ss_conf --776676433---------2047777----------875298-414874135-666---------------------68 Q gi|254780573|r 208 --WGRGRPGWH---------IECSAMS----------SHYLGK-VFDIHGGGL-DLI---------------------FP 243 (461) Q Consensus 208 --wG~GRPGWH---------iECsam~----------~~~lg~-~~DIH~GG~-DL~---------------------FP 243 (461) T Consensus 439 L~WGH~IPvWY~~~E~~~~~~~~G~~~V~~~~~~~~~~~~~gp~~~c~~CG~~f~l~qd~DVLDTWFSS~LWPfs~lGWp 518 (970) T TIGR00422 439 LIWGHRIPVWYVEIEGEEDHKETGEVYVAKEEALPDSKTNTGPKEVCDKCGSVFELEQDEDVLDTWFSSSLWPFSTLGWP 518 (970) T ss_pred CCCCCCCCEEEEECCCCCCCCCCCEEEECCCCCCCCCHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCC T ss_conf 20264576677513577767641147747877641011016768766345874234348775453232344588746886 Q ss_pred -------------CCHHH----------------HHHHHHHCC------CCCCHHHEECCCEEE-EEECCCCCCCCCCCC Q ss_conf -------------75136----------------688886408------753012100343257-642022332332140 Q gi|254780573|r 244 -------------HHENE----------------IAQSCCADR------IEKTANIWIHNGFLN-LEGRKMSKSNGNFIT 287 (461) Q Consensus 244 -------------HHENE----------------iAQs~a~~~------~~~~a~yWlH~G~l~-i~geKMSKSlGN~it 287 (461) T Consensus 519 qekG~~~~~D~~~fyPt~~L~TG~DIiFFWV~RMi~~~~~~tgDEnGkP~~PFk~v~ih-GLVRDeqG~KMSKSlGNvId 597 (970) T TIGR00422 519 QEKGDETEKDLKKFYPTDLLVTGYDIIFFWVARMILRSLALTGDENGKPQVPFKDVYIH-GLVRDEQGRKMSKSLGNVID 597 (970) T ss_pred CCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEC-CEEECCCCCCCCCCCCCCCC T ss_conf 44567766889733887656530368899999998621554013586988782025865-44555888512220568347 Q ss_pred HHHHHC------------------------------CCCCCCCCCCHHHHHHHHHCCCC--CCCCCCCHHHHHHHHHHHH Q ss_conf 899850------------------------------25334557779999999842566--4321145034687776432 Q gi|254780573|r 288 INELLE------------------------------TKKFGGRSWPAPVIRLAMLMTHY--REPIDFTVQRLTEAEILLS 335 (461) Q Consensus 288 i~dlL~------------------------------~~~~~~k~y~p~viR~~lLsshY--RspLdfS~e~L~~A~~~l~ 335 (461) T Consensus 598 P~d~I~GI~L~dL~~K~~~~~l~P~~~eK~~~~~~~~fpnGI~~YGaDALR~~La~~~~G~G~Di~f~~~~v~~~~nF~N 677 (970) T TIGR00422 598 PLDVIEGISLDDLLEKRTGNMLQPQLAEKIKKGTKKSFPNGIPKYGADALRFTLASLVTGPGDDINFDWKRVESARNFAN 677 (970) T ss_pred HHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH T ss_conf 69860688707899997457778358999876432103232002060389999983586789864211898876767767 Q ss_pred HCCCC Q ss_conf 10000 Q gi|254780573|r 336 KWPQT 340 (461) Q Consensus 336 kl~~~ 340 (461) T Consensus 678 KlWNA 682 (970) T TIGR00422 678 KLWNA 682 (970) T ss_pred HHHHH T ss_conf 88999 |
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm. |
| >KOG0432 consensus | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.9e-09 Score=87.88 Aligned_cols=308 Identities=21% Similarity=0.295 Sum_probs=178.3 Q ss_pred ECCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC--------CHHHHHHHHHCCCCC- Q ss_conf 04798479996167888844411127999999999999970799845799605523--------388899998708986- Q gi|254780573|r 20 AIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDI--------DDKIIERARQEHPSI- 90 (461) Q Consensus 20 p~~~~~v~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDi--------dDkii~~a~~~~~~~- 90 (461) T Consensus 71 ~~~~~~f~i~~PPPNVTG~LHiGHALt~aiqD~i~R~~rm~G~~--vlw~PG-~DHAGIATQ~VVEK~l~~~~--~~~Rh 145 (995) T KOG0432 71 PNPGGVFVIPLPPPNVTGSLHIGHALTVAIQDALARYNRMHGYQ--VLWVPG-TDHAGIATQVVVEKQLAREG--GKTRH 145 (995) T ss_pred CCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCE--EEECCC-CCCCCHHHHHHHHHHHHHHC--CCCHH T ss_conf 78888532515999765631065788878899999999825975--332488-66335247999999998715--86321 Q ss_pred -----CCCCCHHHHHHHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEC---- Q ss_conf -----44884899999999999998776268541------000123567777899999874114320128928752---- Q gi|254780573|r 91 -----PINDAISIITSKNTQQFVKDTTRLACLAP------THQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFD---- 155 (461) Q Consensus 91 -----~~~~~~~~~a~~~~~~f~~d~~~L~v~~p------~~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFd---- 155 (461) T Consensus 146 ~lgRe~F~~~vw~Wk~e~g~~I~~Qlk~lGas~DW~re~fTmD~~~s~AV~e--AF-vrL~eeglIyR~~rlVNW~~~L~ 222 (995) T KOG0432 146 DLGREEFLKEVWEWKEEYGGRIYNQLKRLGASLDWDREAFTMDPKLSRAVTE--AF-VRLHEEGLIYRANRLVNWCPALR 222 (995) T ss_pred HCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHH--HH-HHHHHCCCEEECCCEEEECHHHH T ss_conf 1489999999999998858519999998357320147560347788899999--99-99876484673375264136677 Q ss_pred --------------------------------------------------CHH---------------CCCCCCC----- Q ss_conf --------------------------------------------------200---------------2454322----- Q gi|254780573|r 156 --------------------------------------------------TSS---------------IPNYGSF----- 165 (461) Q Consensus 156 --------------------------------------------------v~~---------------~~~YG~L----- 165 (461) T Consensus 223 saiSdiEVe~~ei~~~t~l~vpGyd~~VeFG~L~~~aY~v~gs~~~i~VaTTRpET~lGDvAvAVhP~D~RYk~lhGk~~ 302 (995) T KOG0432 223 SAISDIEVESVEIPGRTLLSVPGYDTKVEFGVLYSFAYPVEGSDEEIVVATTRPETILGDVAVAVHPDDDRYKHLHGKFV 302 (995) T ss_pred HHHHHHEECCEECCCCCEEECCCCCCCEEEEEEEEEEEECCCCCCEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCEE T ss_conf 56545400121258873573478776235323457787605898738973488641113315775787764300067544 Q ss_pred ----CCCCH-------HHHHHHHHC-CCCCCCCCCCCEEEEECCC---------CCCC----E-EE-------------- Q ss_conf ----46754-------666643210-2222101235126663377---------6663----1-41-------------- Q gi|254780573|r 166 ----SRRKI-------DEQKMGTRV-PEKYHKKNPADFILWKRST---------PMEP----G-WE-------------- 205 (461) Q Consensus 166 ----s~~~~-------~~~~~g~r~-~~~~~K~~p~DFaLWK~~~---------~~e~----~-w~-------------- 205 (461) T Consensus 303 ~hP~~~r~lPiI~D~~Vd~~fGTGaVKI-TPaHd~nDyEvgkRh~L~~~ni~~~dG~l~~~~gef~Gm~RFeAR~kvv~~ 381 (995) T KOG0432 303 KHPFTGRKLPIICDIAVDMEFGTGAVKI-TPAHDPNDYEVGKRHNLEFINIFTDDGLLNNVCGEFKGMKRFEAREKVVEK 381 (995) T ss_pred ECCCCCCCCCEEECCCCCCCCCCCCEEE-CCCCCHHHHHHHHHCCCCCEEEECCCCCEECCCHHCCCCHHHHHHHHHHHH T ss_conf 3477799665663110254456662473-678880678888753998126785878532254100474788899999999 Q ss_pred -CCCCC------------------------CCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHH-------H Q ss_conf -46776------------------------676433204777787529841487413566668751366888-------8 Q gi|254780573|r 206 -SPWGR------------------------GRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQS-------C 253 (461) Q Consensus 206 -spwG~------------------------GRPGWHiECsam~~~~lg~~~DIH~GG~DL~FPHHENEiAQs-------~ 253 (461) T Consensus 382 L~e~gL~~g~~~h~mvlpiCSRsgDVIEpllkpQW~v~c~ema~~A~~a---v~sG~L~i~P~~~~k~w~~W~~~i~DWC 458 (995) T KOG0432 382 LKELGLYVGKENHPMVLPICSRSGDVIEPLLKPQWFVSCKEMAKKALKA---VESGKLEILPEFHEKEWYRWLENIRDWC 458 (995) T ss_pred HHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCHHEEEHHHHHHHHHHH---HHCCCEEECCHHHHHHHHHHHHHCCCCC T ss_conf 9984155316788525233477777336012540013379999999998---7449758775577878999975130212 Q ss_pred ----------------------------------------H--------------------------------------- Q ss_conf ----------------------------------------6--------------------------------------- Q gi|254780573|r 254 ----------------------------------------C--------------------------------------- 254 (461) Q Consensus 254 ----------------------------------------a--------------------------------------- 254 (461) T Consensus 459 iSRQLWWGHrIPAy~v~~~~~~~ee~~Wvv~rseeeA~ekaa~k~g~~~~~~L~qDpDVLDTWFSS~L~PfS~lGWP~~t 538 (995) T KOG0432 459 ISRQLWWGHRIPAYFVNLSDGRAEEDYWVVARSEEEAREKAAEKFGPGKEFTLEQDPDVLDTWFSSGLWPFSTLGWPEET 538 (995) T ss_pred HHHHHHHCCCCCEEEEECCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHCCCCCCHHCCCCCCC T ss_conf 13444304546425620246777666168858899999999997188532125148427776664153321104896556 Q ss_pred --------------------------------HCCCCCCHHHEECCCEE-EEEECCCCCCCCCCCCHHHHHCCCCCC--- Q ss_conf --------------------------------40875301210034325-764202233233214089985025334--- Q gi|254780573|r 255 --------------------------------ADRIEKTANIWIHNGFL-NLEGRKMSKSNGNFITINELLETKKFG--- 298 (461) Q Consensus 255 --------------------------------~~~~~~~a~yWlH~G~l-~i~geKMSKSlGN~iti~dlL~~~~~~--- 298 (461) T Consensus 539 ~d~~~fyP~sllETG~DILfFWVaRMvmLg~kLtG~lPF~~V~LH-~mVRDa~GRKMSKSLGNVIDPlDVI~Gisle~L~ 617 (995) T KOG0432 539 KDFKNFYPLSLLETGHDILFFWVARMVMLGLKLTGELPFKEVLLH-GLVRDAHGRKMSKSLGNVIDPLDVIDGISLEKLH 617 (995) T ss_pred CCHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHEEEC-HHHCCCCCCCCCHHHCCCCCHHHHHCCCCHHHHH T ss_conf 418762984154327527899999999965555177773411442-1211352452211004524888875231299999 Q ss_pred --------------------CCCC-------CHHHHHHHHHCC-CCCCCCCCCHHHHHHHHHHHHHCCCC Q ss_conf --------------------5577-------799999998425-66432114503468777643210000 Q gi|254780573|r 299 --------------------GRSW-------PAPVIRLAMLMT-HYREPIDFTVQRLTEAEILLSKWPQT 340 (461) Q Consensus 299 --------------------~k~y-------~p~viR~~lLss-hYRspLdfS~e~L~~A~~~l~kl~~~ 340 (461) T Consensus 618 ~~L~~gNLdp~Ev~~a~~gq~kdFPnGIpeCGtDALRFaL~s~~~~~~dInLDv~rv~g~r~FcNKlWNa 687 (995) T KOG0432 618 AKLLSGNLDPREVEKAKKGQKKDFPNGIPECGTDALRFALCSYTTQGRDINLDVLRVEGYRHFCNKLWNA 687 (995) T ss_pred HHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 9987279998999999877775367887433538999999871256764444189876689999999999 |
|
| >PRK12558 glutamyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=9.7e-08 Score=75.67 Aligned_cols=225 Identities=18% Similarity=0.251 Sum_probs=138.3 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 67888844411127999999999999970799845799605523388899998708986448848999999999999987 Q gi|254780573|r 32 GPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDT 111 (461) Q Consensus 32 GpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~~~~f~~d~ 111 (461) T Consensus 8 APSPTG~lHiG~~rtAl~n~l~Ar---~~~G----~fiLRIEDtD~---~R~~----------------~~~~~~i~~~L 61 (461) T PRK12558 8 APSPTGYIHIGNARTALFNWLFAR---AHGG----KFILRYDDTDV---ERSK----------------QEYADAIADDL 61 (461) T ss_pred CCCCCCCCCHHHHHHHHHHHHHHH---HCCC----EEEEEECCCCC---CCCC----------------HHHHHHHHHHH T ss_conf 989898532789999999999999---6199----89998776898---7688----------------79999999999 Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCH--------------HCCCCCC----CCCCCHHHH Q ss_conf 7626854100012356777789999987411432012892875220--------------0245432----246754666 Q gi|254780573|r 112 TRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTS--------------SIPNYGS----FSRRKIDEQ 173 (461) Q Consensus 112 ~~L~v~~p~~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~--------------~~~~YG~----Ls~~~~~~~ 173 (461) T Consensus 62 ~WlGl~wDe-~~~QS~r~~~Y~~~~~~L~~~g~aY~C-----fct~eel~~~r~~~~~~~~~~~Y~~~~~~l~~~~~~~~ 135 (461) T PRK12558 62 RWLGLDPDR-VEYQSKRFDRYAEAAEKLKAAGLLYAC-----YETAEELERRRKIQLARRLPPVYDRAALKLTDAEKAAL 135 (461) T ss_pred HHCCCCCCC-CCHHHCCHHHHHHHHHHHHHCCCCEEC-----CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH T ss_conf 987999998-741643999999999999986993653-----88889999999999966999887842022998888766 Q ss_pred HHHHHCC------------------------------CCCCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHH Q ss_conf 6432102------------------------------2221012351266633776663141467766764332047777 Q gi|254780573|r 174 KMGTRVP------------------------------EKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMS 223 (461) Q Consensus 174 ~~g~r~~------------------------------~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~ 223 (461) T Consensus 136 ~~~g~~p~~r~~~~~~~~~~~~~~~~~~~~~D~v~G~i~~~~~~~~D~Vi~r-------------sDG~ptY~l-A~VVD 201 (461) T PRK12558 136 EAEGRKPHWRFLLPNFESDPFATQRTEVHWDDLVRGPQTVDLASLSDPVLVR-------------EDGTYLYTL-PSVVD 201 (461) T ss_pred HHCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCEEEECCCCCCCEEEEE-------------CCCCCEEEE-EEEEC T ss_conf 6247997799983542135567767727984014630673343458828993-------------489710345-57855 Q ss_pred HHHCCCCEEEEEECCCCCCCCCHH---HHHHHHHHCCCCCCHHHEECCCEE-EEEECCCCCCCCCCCCHHHHHCCCCCCC Q ss_conf 875298414874135666687513---668888640875301210034325-7642022332332140899850253345 Q gi|254780573|r 224 SHYLGKVFDIHGGGLDLIFPHHEN---EIAQSCCADRIEKTANIWIHNGFL-NLEGRKMSKSNGNFITINELLETKKFGG 299 (461) Q Consensus 224 ~~~lg~~~DIH~GG~DL~FPHHEN---EiAQs~a~~~~~~~a~yWlH~G~l-~i~geKMSKSlGN~iti~dlL~~~~~~~ 299 (461) T Consensus 202 D~~m~--IthviRg~d~l----~~t~~~~~l~~alg~~~p---~~~h~pli~~~~g~klskR~g~-~sv~~yr~------ 265 (461) T PRK12558 202 DIDMG--VTHIIRGDDHV----TNTGVQIALFRALGAEPP---VFGHHNLLTTASGEGLSKRTGA-LSVGSLRE------ 265 (461) T ss_pred CCCCC--CCEEEECHHHH----HHCHHHHHHHHHHCCCCC---EEEECCEEECCCCCCCCCCCCC-CCHHHHHH------ T ss_conf 75578--85446368588----615999999999579998---0897134568999816666897-58999998------ Q ss_pred CCCCHHHHHHHHHCCCCCC Q ss_conf 5777999999984256643 Q gi|254780573|r 300 RSWPAPVIRLAMLMTHYRE 318 (461) Q Consensus 300 k~y~p~viR~~lLsshYRs 318 (461) T Consensus 266 ~GylPeAl~NyLalLGWs~ 284 (461) T PRK12558 266 AGYEPMAVASLAVLLGTSE 284 (461) T ss_pred CCCCCHHHHHHHHHHCCCC T ss_conf 7998478999999847999 |
|
| >PRK01406 gltX glutamyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.5e-07 Score=72.69 Aligned_cols=238 Identities=18% Similarity=0.271 Sum_probs=143.8 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 67888844411127999999999999970799845799605523388899998708986448848999999999999987 Q gi|254780573|r 32 GPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDT 111 (461) Q Consensus 32 GpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~~~~f~~d~ 111 (461) T Consensus 8 APSPtG~lH~G~~rtal~n~l~a~---~~~g----~f~lRieDtD~---~R~~----------------~~~~~~i~~~l 61 (467) T PRK01406 8 APSPTGYLHVGGARTALFNWLFAR---HHGG----KFILRIEDTDL---ERST----------------PEAVDAILDGL 61 (467) T ss_pred CCCCCCCCCHHHHHHHHHHHHHHH---HHCC----EEEEEECCCCC---CCCC----------------HHHHHHHHHHH T ss_conf 899998422478999999999999---7299----69999687998---8787----------------79999999999 Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECC--------------HHCCCC-CCCCCCCHHHHH-- Q ss_conf 762685410001235677778999998741143201289287522--------------002454-322467546666-- Q gi|254780573|r 112 TRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDT--------------SSIPNY-GSFSRRKIDEQK-- 174 (461) Q Consensus 112 ~~L~v~~p~~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv--------------~~~~~Y-G~Ls~~~~~~~~-- 174 (461) T Consensus 62 ~wlgi~~de~p~~QS~r~~~y~~~~~~L~~~g~aY~c-----fcs~e~l~~~r~~~~~~~~~~~Y~~~~r~l~~~~~~~~ 136 (467) T PRK01406 62 KWLGLDWDEGPYRQSERFDRYKEVAEQLLEKGKAYYC-----YCTPEELEAMREEQLARGEPPRYDGRCRDLTPEEVAAR 136 (467) T ss_pred HHCCCCCCCCCEEHHCCHHHHHHHHHHHHHCCCCEEC-----CCCHHHHHHHHHHHHHCCCCCCCCHHHHCCCHHHHHHH T ss_conf 9879999988861744899999999999984998644-----77899999869999847999888855533898788767 Q ss_pred --HHHHCCCCCCCCCCCC-EEEEECCCCCCCEEECC-C-------CCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCC Q ss_conf --4321022221012351-26663377666314146-7-------76676433204777787529841487413566668 Q gi|254780573|r 175 --MGTRVPEKYHKKNPAD-FILWKRSTPMEPGWESP-W-------GRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243 (461) Q Consensus 175 --~g~r~~~~~~K~~p~D-FaLWK~~~~~e~~w~sp-w-------G~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~FP 243 (461) T Consensus 137 ~~~g~~--~viR~k~~~~~~~~~~D~i~G~i~~~~~~~~D~vi~r~dg~pty~~-a~vvDD~~m~--it~virg~d---- 207 (467) T PRK01406 137 EAEGRP--PVIRFKVPQEGEIVWDDLVRGEIEFSNSELDDLVILRSDGTPTYNL-AVVVDDHDMG--ITHVIRGED---- 207 (467) T ss_pred HHCCCC--CEEEEECCCCCCEEEEHHHCCCCCCCCCCCCCEEEEECCCCCEEEE-CCCCCCCCCC--CCEEECCCC---- T ss_conf 646998--2599866888865764030466555755568816880699833420-2005762368--865403753---- Q ss_pred CCHHHHHH---HHHHCCCCCCHHHEECCCEE-EEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCC Q ss_conf 75136688---88640875301210034325-764202233233214089985025334557779999999842566432 Q gi|254780573|r 244 HHENEIAQ---SCCADRIEKTANIWIHNGFL-NLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREP 319 (461) Q Consensus 244 HHENEiAQ---s~a~~~~~~~a~yWlH~G~l-~i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~lLsshYRsp 319 (461) T Consensus 208 ~~~~t~~~~~l~~~l~~~~p---~~~H~pli~~~~g~kLSKR~~~-~~i~~~~~------~GylPeAllNyLa~LGWs~~ 277 (467) T PRK01406 208 HLSNTPRQILLYEALGWEVP---VFAHLPLILGEDGKKLSKRHGA-TSVMQYRD------MGYLPEALLNYLARLGWSHG 277 (467) T ss_pred CHHHHHHHHHHHHHHCCCCC---EEEEEECEECCCCCCCCCCCCC-CCHHHHHH------CCCCHHHHHHHHHHHCCCCC T ss_conf 58889999999998389997---1673011148999815566885-21999998------59988999999998479998 |
|
| >COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.6e-08 Score=81.32 Aligned_cols=235 Identities=19% Similarity=0.286 Sum_probs=137.4 Q ss_pred EEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 96167888844411127999999999999970799845799605523388899998708986448848999999999999 Q gi|254780573|r 29 YVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFV 108 (461) Q Consensus 29 Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~~~~f~ 108 (461) T Consensus 12 tRFAPsPtG~LHiG~artAl~n~~~Ar~---~~G----~fiLRiEDTD~---~R~----------------~~e~~~~I~ 65 (472) T COG0008 12 TRFAPSPTGYLHIGHARTALLNYLYARK---YGG----KFILRIEDTDP---ERE----------------TPEAEDAIL 65 (472) T ss_pred EEECCCCCCCCCHHHHHHHHHHHHHHHH---HCC----EEEEEECCCCC---CCC----------------CHHHHHHHH T ss_conf 9779599985426889999997999998---399----79999647998---878----------------878999999 Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECC---HHC----------C-CCCCC-CCCCH-HH Q ss_conf 987762685410001235677778999998741143201289287522---002----------4-54322-46754-66 Q gi|254780573|r 109 KDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDT---SSI----------P-NYGSF-SRRKI-DE 172 (461) Q Consensus 109 ~d~~~L~v~~p~~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv---~~~----------~-~YG~L-s~~~~-~~ 172 (461) T Consensus 66 ~~L~WLGl~wde~~~~QS~r~~~Y~~~~~~Li~~G~AY~c~----ct~eele~~R~~~~~~~~~P~~y~r~~~~L~~~~~ 141 (472) T COG0008 66 EDLEWLGLDWDEGPYYQSERFDIYYEYAEKLIEKGKAYVCY----CTPEELEEMRELRGALGEPPPSYDRDERNLTLFEK 141 (472) T ss_pred HHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCEEEEC----CCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHH T ss_conf 99986688889761436423999999999999879968866----89899999999886258899999923543546677 Q ss_pred HHH-HH------HCCCCCCCCCC--CCEEEEECCCCCCCEEEC-CCC------CCCCCCCCHHHHHHHHHCCCCEEEEEE Q ss_conf 664-32------10222210123--512666337766631414-677------667643320477778752984148741 Q gi|254780573|r 173 QKM-GT------RVPEKYHKKNP--ADFILWKRSTPMEPGWES-PWG------RGRPGWHIECSAMSSHYLGKVFDIHGG 236 (461) Q Consensus 173 ~~~-g~------r~~~~~~K~~p--~DFaLWK~~~~~e~~w~s-pwG------~GRPGWHiECsam~~~~lg~~~DIH~G 236 (461) T Consensus 142 ~~~~~~~~~~~iR~k~~~~~~~~~~~D~v~------g~i~~~~~~~~dv~~r~dg~ptY~f-avvvDD~~mgITH--viR 212 (472) T COG0008 142 MADLGEGGPAVVRLKIPMAHPGPVFRDLVR------GRIVFAPKHPDFVILRYDGYPTYNF-AVVVDDHLMGITH--VLR 212 (472) T ss_pred HHHCCCCCCEEEEEECCCCCCCCCCCCCEE------EEEECCCCCCCCEEECCCCCCCCCE-EEEECHHHCCCCE--EEE T ss_conf 763046888079994777778984120423------3674476687560424777745430-0261032168863--773 Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCHHHEECCCEEEE-EECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHC Q ss_conf 3566668751366888864087530121003432576-4202233233214089985025334557779999999842 Q gi|254780573|r 237 GLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNL-EGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLM 313 (461) Q Consensus 237 G~DL~FPHHENEiAQs~a~~~~~~~a~yWlH~G~l~i-~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~lLs 313 (461) T Consensus 213 G~d~~~-nt~~q~~l~~~lg~-~~--P~~~H~~li~~~~g~kLSKr~~-~~~~~~~~~------~G~~~~al~~~~al 279 (472) T COG0008 213 GEDHLD-NTPRQIWLYEALGW-PP--PVYAHLPLLLNEDGKKLSKRKG-AVSIGEYRV------EGWLPPALPNLLAL 279 (472) T ss_pred CHHHCC-CCHHHHHHHHHCCC-CC--CCEEEEEEEECCCCCEECCCCC-CCCCCHHHH------CCCCCHHHHHHHHH T ss_conf 444204-78999999997399-99--8279751046688783047667-665302555------18893889999998 |
|
| >pfam00749 tRNA-synt_1c tRNA synthetases class I (E and Q), catalytic domain | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.4e-09 Score=88.93 Aligned_cols=233 Identities=18% Similarity=0.233 Sum_probs=135.8 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 67888844411127999999999999970799845799605523388899998708986448848999999999999987 Q gi|254780573|r 32 GPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDT 111 (461) Q Consensus 32 GpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~~~~f~~d~ 111 (461) T Consensus 7 APSPTG~lHiG~~rtAl~n~l~Ar~---~~G----~fiLRIEDtD~---~R~~----------------~e~~~~I~~dL 60 (314) T pfam00749 7 APSPTGYLHIGHARTALFNYLFAKN---YNG----KFILRFDDTDP---EREK----------------PEYEESILEDL 60 (314) T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHH---HCC----EEEEEECCCCC---CCCC----------------HHHHHHHHHHH T ss_conf 8898986448999999999999998---099----89999687898---8687----------------68999999999 Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---EE--------ECCHHCCCCCCCCCCCHHHHH-HHH-- Q ss_conf 7626854100012356777789999987411432012892---87--------522002454322467546666-432-- Q gi|254780573|r 112 TRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNE---II--------FDTSSIPNYGSFSRRKIDEQK-MGT-- 177 (461) Q Consensus 112 ~~L~v~~p~~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~---Vy--------Fdv~~~~~YG~Ls~~~~~~~~-~g~-- 177 (461) T Consensus 61 ~wLGl~wDe~~~~QS~r~~~Y~~~~~~L~~~g~aY~C~cs~~el~~~r~~~~~~~~~~~~~y~~~~~~l~~~~~~~~~~~ 140 (314) T pfam00749 61 KWLGIKWDEKPYYQSDRFDIYYKYAEELIEKGLAYVCFCTPEELEEEREEQEALGSPERPRYDEECLRLFEEEMRKGEAE 140 (314) T ss_pred HHHCCCCCCCCEEHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCHHHHHCCCCC T ss_conf 99537899883552020999999999999749952258999999999987763599989988322022799998615025 Q ss_pred ------HCCCCCC----------------CCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEEE Q ss_conf ------1022221----------------012351266633776663141467766764332047777875298414874 Q gi|254780573|r 178 ------RVPEKYH----------------KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHG 235 (461) Q Consensus 178 ------r~~~~~~----------------K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~ 235 (461) T Consensus 141 ~~~~~~R~k~~~~~~~~~~D~v~G~i~~~~~~~~D~vi~R-------------~dg~ptY~lA~v-VDD~~~~--IThVi 204 (314) T pfam00749 141 GGKATLRFKIPMESPYVMRDLVRGRIKFEPSALHDRTGLK-------------WDGYPTYDFAVV-IDDAIMG--ITHVL 204 (314) T ss_pred CCCCEEEEECCCCCCEEEECCCCCEEEECHHHCCCCEEEC-------------CEEEEEEEEEEE-ECCCCCC--CCEEE T ss_conf 8872278850688862676576653884445388617644-------------605456523058-7255688--88375 Q ss_pred ECCCCCCCCCHHHHHHHHHHCCCCCCHHHEECC-CEEEEEECCCCCCCCCC-CCHHHHHCCCCCCCCCCCHHHHHHHHHC Q ss_conf 135666687513668888640875301210034-32576420223323321-4089985025334557779999999842 Q gi|254780573|r 236 GGLDLIFPHHENEIAQSCCADRIEKTANIWIHN-GFLNLEGRKMSKSNGNF-ITINELLETKKFGGRSWPAPVIRLAMLM 313 (461) Q Consensus 236 GG~DL~FPHHENEiAQs~a~~~~~~~a~yWlH~-G~l~i~geKMSKSlGN~-iti~dlL~~~~~~~k~y~p~viR~~lLs 313 (461) T Consensus 205 RG~D~-l~~T~~Q~~l~~aLg~~~P--~-y~H~pli~~~~G~kLSKR~~~~~v~~~~~r~------~g~~p~a~ln~L~~ 274 (314) T pfam00749 205 RGEEH-LDNTPKQIWIYQALGWEVP--P-FIHEYLRLNLDGTKLSKRKLSLSVFISQVKG------WGDPPEALLNFLRR 274 (314) T ss_pred CCCCC-CCCCHHHHHHHHHCCCCCC--C-EEEEEEEECCCCCCCCCCCCHHCCCCCCCCC------CCCCHHHHHHHHHH T ss_conf 66010-0188999999996399998--5-6988708989998533727621035263347------99961999999998 Q ss_pred CCC Q ss_conf 566 Q gi|254780573|r 314 THY 316 (461) Q Consensus 314 shY 316 (461) T Consensus 275 lG~ 277 (314) T pfam00749 275 RGW 277 (314) T ss_pred CCC T ss_conf 699 |
Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only glutamyl and glutaminyl tRNA synthetases. In some organisms, a single glutamyl-tRNA synthetase aminoacylates both tRNA(Glu) and tRNA(Gln). |
| >PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.02 E-value=7e-09 Score=83.85 Aligned_cols=243 Identities=18% Similarity=0.197 Sum_probs=139.0 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 67888844411127999999999999970799845799605523388899998708986448848999999999999987 Q gi|254780573|r 32 GPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDT 111 (461) Q Consensus 32 GpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~~~~f~~d~ 111 (461) T Consensus 10 APSPTG~LHlG~~rtAl~n~l~Ar~---~~G----~~iLRIEDtD~---~R~~----------------~~~~~~Il~~L 63 (299) T PRK05710 10 APSPSGPLHFGSLVSALLSYLDARA---QGG----RWLVRIEDIDP---PREV----------------PGAAAAILADL 63 (299) T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHH---HCC----EEEEEECCCCC---CCCC----------------HHHHHHHHHHH T ss_conf 9699985328999999999999998---299----89998677897---6587----------------68999999999 Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC----------------CCCEEECCHHCCCCCCCC------CCC Q ss_conf 7626854100012356777789999987411432012----------------892875220024543224------675 Q gi|254780573|r 112 TRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEA----------------NNEIIFDTSSIPNYGSFS------RRK 169 (461) Q Consensus 112 ~~L~v~~p~~~pr~t~~i~~~i~~i~~L~~~g~aY~~----------------~g~VyFdv~~~~~YG~Ls------~~~ 169 (461) T Consensus 64 ~wlGl~wD~~~~~QS~R~~~Y~~~~~~L~~~g~aY~C~Ctr~el~~~~~~~~~~~~~Y~g~cr~~~~~~~~~~~~~~R~k 143 (299) T PRK05710 64 EWLGLHWDGPVRRQSERHDAYRAALDRLAAAGLVYPCFCSRKEIAAALRAAHAGGGAYPGTCRLLAHGRAAGRPAAWRLR 143 (299) T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHCCCCCCCCHHHCCCCHHHCCCCEEEEEE T ss_conf 99568888740488858999999999999769902505899999999985121699898612214542352998179998 Q ss_pred H-------HHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCC Q ss_conf 4-------666643210222210123512666337766631414677667643320477778752984148741356666 Q gi|254780573|r 170 I-------DEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242 (461) Q Consensus 170 ~-------~~~~~g~r~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~F 242 (461) T Consensus 144 ~~~~~~~~~D~i~G~-~~~-~~~~~~gDfVi~R~--D-----------g~ptY~l-AvvVDD~~~g--IThViRG~Dll~ 205 (299) T PRK05710 144 VPAAVYRFGDRLQGE-ITA-DPALAVGDFVLARR--D-----------GLFAYNL-AVVVDDALQG--VTHVVRGADLLE 205 (299) T ss_pred CCCCCEEEECCCCEE-EEC-CCCCCCCCEEEEEC--C-----------CCEEEEE-EEEECCCCCC--CCEEEECHHHHH T ss_conf 799741686266505-850-66435698799923--8-----------9705778-6443464368--887981602011 Q ss_pred CCCHHHHHHHHHHCCCCCCHHHEECCCEE-EEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCC Q ss_conf 87513668888640875301210034325-76420223323321408998502533455777999999984256643211 Q gi|254780573|r 243 PHHENEIAQSCCADRIEKTANIWIHNGFL-NLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPID 321 (461) Q Consensus 243 PHHENEiAQs~a~~~~~~~a~yWlH~G~l-~i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~lLsshYRspLd 321 (461) T Consensus 206 s-T~~Q~~L~~aLg~~~P---~y~H~pli~~~~G~KLSKr~~a-~~i~~~~------~~~~L~~al~~Lg----~~~~~~ 270 (299) T PRK05710 206 S-TPRQIYLQQLLGLPTP---RYLHHPLVLNPDGAKLSKQNGA-PALAELD------PRPALIAALRFLG----QAAPEA 270 (299) T ss_pred C-CHHHHHHHHHCCCCCC---CEEEECCEECCCCCCCCCCCCC-CCHHHCC------CCCHHHHHHHHCC----CCCCCC T ss_conf 4-8999999998199998---5796222278698825787998-3824466------1449999999849----999864 Q ss_pred CCH----HHHHHHHHH Q ss_conf 450----346877764 Q gi|254780573|r 322 FTV----QRLTEAEIL 333 (461) Q Consensus 322 fS~----e~L~~A~~~ 333 (461) T Consensus 271 ~~~~~~~e~l~~ai~~ 286 (299) T PRK05710 271 WQDASVEELLAWAVAH 286 (299) T ss_pred CCCCCHHHHHHHHHHH T ss_conf 5549999999999970 |
|
| >PRK12410 glutamyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.1e-07 Score=75.15 Aligned_cols=238 Identities=17% Similarity=0.209 Sum_probs=140.0 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 67888844411127999999999999970799845799605523388899998708986448848999999999999987 Q gi|254780573|r 32 GPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDT 111 (461) Q Consensus 32 GpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~~~~f~~d~ 111 (461) T Consensus 5 APSPTG~lHiG~~rtAl~n~l~Ar~---~~G----~fiLRIEDtD~---~R----------------~~~~~~~~i~~~L 58 (433) T PRK12410 5 APSPTGDMHIGNLRAAIFNYIVAKQ---QNE----DFIIRIEDTDK---ER----------------NIEGKDKEILEIL 58 (433) T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHH---CCC----EEEEEECCCCC---CC----------------CCHHHHHHHHHHH T ss_conf 9797996427899999999999985---599----89998787899---98----------------9869999999999 Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCH--------------HCCCC-CCCCCCCHHHHHH- Q ss_conf 7626854100012356777789999987411432012892875220--------------02454-3224675466664- Q gi|254780573|r 112 TRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTS--------------SIPNY-GSFSRRKIDEQKM- 175 (461) Q Consensus 112 ~~L~v~~p~~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~--------------~~~~Y-G~Ls~~~~~~~~~- 175 (461) T Consensus 59 ~wlGl~wD-e~~~QS~R~~~Y~~~~~~L~~~g~aY~C-----~ct~eel~~~r~~~~~~~~~~~Y~~~c~~l~~~e~~~~ 132 (433) T PRK12410 59 NLFGISWD-KLVYQSENLKFHRQMAEKLLSEKKAFAC-----FCSEEELEAKKEKAKKQKKPYRYDGTCENLADIEVLKC 132 (433) T ss_pred HHCCCCCC-CCEECCCCHHHHHHHHHHHHHCCCEEEE-----CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHC T ss_conf 98599999-8831257899999999999980996896-----56789999988889855999778875443898679746 Q ss_pred HHHCCCCCCCCCCCCEEEEECCCCCCCEEEC-C-------CCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCHH Q ss_conf 3210222210123512666337766631414-6-------7766764332047777875298414874135666687513 Q gi|254780573|r 176 GTRVPEKYHKKNPADFILWKRSTPMEPGWES-P-------WGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHEN 247 (461) Q Consensus 176 g~r~~~~~~K~~p~DFaLWK~~~~~e~~w~s-p-------wG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~FPHHEN 247 (461) T Consensus 133 ~~~~~~R--~k~p~~~~~~~D~v~G~i~~~~~~~~D~Vi~R~DG~ptY~l-a~VVDD~~m~--IThViRGeD----hl~n 203 (433) T PRK12410 133 EKPFVVR--LKKPNHTMSFTDAIKGELSFEPDEIDSFVILRQDKTPTYNF-ACAVDDMLYD--ISFIIRGED----HVSN 203 (433) T ss_pred CCCCEEE--EECCCCCEEEEECCCCEECCCCCCCCCEEEEECCCCEEEEE-EEEECCCCCC--CCEEECCHH----HHHH T ss_conf 9982799--98799985886344753415811058748993489835642-2796488787--400264285----9999 Q ss_pred HHHH---HHHHCCCCCCHHHEECCCEE-EEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCC Q ss_conf 6688---88640875301210034325-764202233233214089985025334557779999999842566432 Q gi|254780573|r 248 EIAQ---SCCADRIEKTANIWIHNGFL-NLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREP 319 (461) Q Consensus 248 EiAQ---s~a~~~~~~~a~yWlH~G~l-~i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~lLsshYRsp 319 (461) T Consensus 204 T~kQi~l~~aLg~~~P-~-~~~H~pli~~~~g~kLSKR~g~-~~i~~yre------~GylPeAl~NyLalLG~~~~ 270 (433) T PRK12410 204 TPKQILIREALGYNKP-I-TYAHLPIILNEEGKKMSKRDNA-SSVKWLLE------QGFLPEAIANYLILLGNKTP 270 (433) T ss_pred HHHHHHHHHHCCCCCC-C-EEECCCCEECCCCCCCCCCCCC-CCHHHHHH------CCCCHHHHHHHHHHHCCCCC T ss_conf 9999999998699998-5-2532010018999855666898-38888976------79875999999998289997 |
|
| >cd00808 GluRS_core Descriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain | Back alignment and domain information |
|---|
Probab=98.87 E-value=9.3e-08 Score=75.82 Aligned_cols=182 Identities=19% Similarity=0.319 Sum_probs=113.8 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 67888844411127999999999999970799845799605523388899998708986448848999999999999987 Q gi|254780573|r 32 GPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDT 111 (461) Q Consensus 32 GpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~~~~f~~d~ 111 (461) T Consensus 7 APsPtG~LHiG~~rtal~n~l~Ar~---~~G----~f~LRieDtD~---~R~~----------------~e~~~~I~~dL 60 (239) T cd00808 7 APSPTGYLHIGGARTALFNYLFAKK---HGG----KFILRIEDTDQ---ERSV----------------EEAEEAILEDL 60 (239) T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHH---HCC----EEEEEECCCCC---CCCC----------------HHHHHHHHHHH T ss_conf 8898985338999999999999998---199----89998456898---8787----------------69999999999 Q ss_pred HHHCCCCCCHHH---------HHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHCCCCCCCCCCCHHHHHHHHHCCCC Q ss_conf 762685410001---------23567777899999874114320128928752200245432246754666643210222 Q gi|254780573|r 112 TRLACLAPTHQP---------RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 (461) Q Consensus 112 ~~L~v~~p~~~p---------r~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~~~~YG~Ls~~~~~~~~~g~r~~~~ 182 (461) T Consensus 61 ~wLGl~wDe-~~~~~~~~~py~QS~r~~~Y~~~~~~L~~~---------------------------------------- 99 (239) T cd00808 61 KWLGIDWDE-GPDVGGPYGPYRQSERLDIYKKYAEQLLEE---------------------------------------- 99 (239) T ss_pred HHCCCCCCC-CCCCCCCCCCCCCCCCHHHHHHHHHHHHHC---------------------------------------- T ss_conf 981888774-646688887804210799999999976765---------------------------------------- Q ss_pred CCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCH Q ss_conf 21012351266633776663141467766764332047777875298414874135666687513668888640875301 Q gi|254780573|r 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTA 262 (461) Q Consensus 183 ~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~FPHHENEiAQs~a~~~~~~~a 262 (461) T Consensus 100 --------------------------gDG~PtY~f-A~vvDD~~~~ITh--viRg~D~~~-~t~~q~~l~~~Lg~~~P-- 147 (239) T cd00808 100 --------------------------GDGFPTYHF-ANVVDDHLMGITH--VIRGEEHLS-STPKQILLYEALGWEPP-- 147 (239) T ss_pred --------------------------CCCCCCCCC-CCEECCCCCCCCE--EEECHHHHC-CCHHHHHHHHHCCCCCC-- T ss_conf --------------------------998842343-5164265479988--971524105-77999999996489998-- Q ss_pred HHEECCCEE-EEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCC Q ss_conf 210034325-7642022332332140899850253345577799999998425664321 Q gi|254780573|r 263 NIWIHNGFL-NLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPI 320 (461) Q Consensus 263 ~yWlH~G~l-~i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~lLsshYRspL 320 (461) T Consensus 148 ~-f~Hlpli~~~~g~kLSKR~~~-~si~~~r~------~G~~Peai~n~l~~lG~s~~~ 198 (239) T cd00808 148 K-FAHLPLILNPDGKKLSKRHGD-TSISDYRE------EGYLPEALLNYLALLGWSPPD 198 (239) T ss_pred E-EECCCCEECCCCCCCCCCCCH-HCHHHHHH------CCCCHHHHHHHHHHHCCCCCC T ss_conf 0-326624268998977670872-16999998------699879999999997599987 |
The descriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer, that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. |
| >PRK00574 gltX glutamyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.3e-06 Score=64.68 Aligned_cols=238 Identities=19% Similarity=0.246 Sum_probs=143.5 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 67888844411127999999999999970799845799605523388899998708986448848999999999999987 Q gi|254780573|r 32 GPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDT 111 (461) Q Consensus 32 GpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~~~~f~~d~ 111 (461) T Consensus 10 APSPTG~lHiG~~rtAl~n~l~Ar---~~~G----~fiLRIEDTD~---~R----------------~~~~~~~~I~~~L 63 (489) T PRK00574 10 APSPTGYLHIGNARTALFNYLFAK---HNNG----KFILRIEDTDQ---ER----------------NVEGGEESQLENL 63 (489) T ss_pred CCCCCCCCCHHHHHHHHHHHHHHH---HCCC----EEEEEECCCCC---CC----------------CCHHHHHHHHHHH T ss_conf 989998422478999999999999---6499----89998677898---77----------------8769999999999 Q ss_pred HHHCCCCCCHHH---------HHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCH--------------HCCCC-CCCCC Q ss_conf 762685410001---------2356777789999987411432012892875220--------------02454-32246 Q gi|254780573|r 112 TRLACLAPTHQP---------RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTS--------------SIPNY-GSFSR 167 (461) Q Consensus 112 ~~L~v~~p~~~p---------r~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~--------------~~~~Y-G~Ls~ 167 (461) T Consensus 64 ~wlgl~~D-E~p~~~g~~gPY~QS~R~~~Y~~~a~~Ll~~G~AY~C-----fct~eel~~~r~~~~~~g~~~~Y~~~cr~ 137 (489) T PRK00574 64 KWLGIDWD-EGPDKGGEYGPYRQSERLDIYQKYADQLLEEGKAYYC-----FCTEEELEAEREKQEARGETPKYDGKCLG 137 (489) T ss_pred HHCCCCCC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEC-----CCCHHHHHHHHHHHHHCCCCCCCCCCCCC T ss_conf 98798887-7877788888835126899999999999974997452-----57799999989999756999878723233 Q ss_pred CCHHHHH----HHHHCCCCCCCCCCCC-EEEEECCCCCCCEEECC--------CCCCCCCCCCHHHHHHHHHCCCCEEEE Q ss_conf 7546666----4321022221012351-26663377666314146--------776676433204777787529841487 Q gi|254780573|r 168 RKIDEQK----MGTRVPEKYHKKNPAD-FILWKRSTPMEPGWESP--------WGRGRPGWHIECSAMSSHYLGKVFDIH 234 (461) Q Consensus 168 ~~~~~~~----~g~r~~~~~~K~~p~D-FaLWK~~~~~e~~w~sp--------wG~GRPGWHiECsam~~~~lg~~~DIH 234 (461) T Consensus 138 l~~~e~~~~~~~g~~--~viRfk~p~~~~~~~~D~v~G~i~~~~~~ldD~Vi~rsDG~PtYhl-a~VVDD~~M~--ITHV 212 (489) T PRK00574 138 LTKEEIEEYEAEGIP--PVIRFKVPENGTYSFDDIVKGKISFDSSTIGDFVIVKSDGFPTYNF-AVVVDDHLME--ITHV 212 (489) T ss_pred CCHHHHHHHHHCCCC--CEEEEECCCCCEEEEEEECCCCCCCCCCCCCCEEEEECCCCEEEEE-CCCCCCCCCC--CCEE T ss_conf 898889989856999--2376536998718986423676465756678768881489805641-2114751258--7643 Q ss_pred EECCCCCCCCCHHHHHH---HHHHCCCCCCHHHEECCCEEE-EEECCCCCCCCCCC-CHHHHHCCCCCCCCCCCHHHHHH Q ss_conf 41356666875136688---886408753012100343257-64202233233214-08998502533455777999999 Q gi|254780573|r 235 GGGLDLIFPHHENEIAQ---SCCADRIEKTANIWIHNGFLN-LEGRKMSKSNGNFI-TINELLETKKFGGRSWPAPVIRL 309 (461) Q Consensus 235 ~GG~DL~FPHHENEiAQ---s~a~~~~~~~a~yWlH~G~l~-i~geKMSKSlGN~i-ti~dlL~~~~~~~k~y~p~viR~ 309 (461) T Consensus 213 IRGed----hlsnTpkqi~ly~Alg~~~P---~faHlPLi~~~dg~KLSKR~g~~~~sv~~yre------~GylPeAl~N 279 (489) T PRK00574 213 IRGED----HISNTPKQIMIYEAFGWEPP---KFGHMPLILNEDRKKLSKRDGATLQFIEDYRE------LGYLPEAIFN 279 (489) T ss_pred ECCHH----HHHHHHHHHHHHHHHCCCCC---EEEEEEEEECCCCCCCCCCCCCHHHHHHHHHH------CCCCCHHHHH T ss_conf 03521----57763999999998289997---47851113789998166667970157999998------7986669999 Q ss_pred HHHCCCCCCC Q ss_conf 9842566432 Q gi|254780573|r 310 AMLMTHYREP 319 (461) Q Consensus 310 ~lLsshYRsp 319 (461) T Consensus 280 yLa~LGWs~~ 289 (489) T PRK00574 280 FIALLGWSPE 289 (489) T ss_pred HHHHHCCCCC T ss_conf 9998079999 |
|
| >PRK05347 glutaminyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.1e-06 Score=68.03 Aligned_cols=260 Identities=17% Similarity=0.161 Sum_probs=147.6 Q ss_pred ECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 16788884441112799999999999997079984579960552338889999870898644884899999999999998 Q gi|254780573|r 31 CGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 (461) Q Consensus 31 CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~~~~f~~d 110 (461) T Consensus 34 FpPePnG~LHiGHaka~~lN~~~a~~--y-~G~----~~LRfDDTNP-------------------~~e~~e~~~~I~~d 87 (556) T PRK05347 34 FPPEPNGYLHIGHAKSICLNFGLAQD--Y-GGK----CNLRFDDTNP-------------------EKEDQEYVDSIKED 87 (556) T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHH--C-CCE----EEEEECCCCC-------------------CCCCHHHHHHHHHH T ss_conf 49899987618888999866999997--0-998----9998358998-------------------74548999999999 Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCE-EECCHH--CCCCCCCC---CCC-------HHHHHHHH Q ss_conf 776268541000123567777899999874114320128928-752200--24543224---675-------46666432 Q gi|254780573|r 111 TTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEI-IFDTSS--IPNYGSFS---RRK-------IDEQKMGT 177 (461) Q Consensus 111 ~~~L~v~~p~~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~V-yFdv~~--~~~YG~Ls---~~~-------~~~~~~g~ 177 (461) T Consensus 88 ~~wLg~~~~~~i~~~Sd~f~~~y~~a~~LI~~g~AYv~~~~~ee~~~~Rg~~~~~g~~sp~R~~~~eenl~lf~~M~~G~ 167 (556) T PRK05347 88 VRWLGFDWGGELRYASDYFDQLYEYAVELIKKGKAYVDDLSAEEIREYRGTLTEPGKNSPYRDRSVEENLDLFERMRAGE 167 (556) T ss_pred HHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC T ss_conf 98749988982788134299999999999864881356899999998747776688879655699899999999986688 Q ss_pred --------HCCCCCC--CCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCHH Q ss_conf --------1022221--012351266633776663141467766764332047777875298414874135666687513 Q gi|254780573|r 178 --------RVPEKYH--KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHEN 247 (461) Q Consensus 178 --------r~~~~~~--K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~FPHHEN 247 (461) T Consensus 168 ~~eg~~vlR~K~Dm~~~N~~mRDpv~yRi~~~~H~rtg~k~~-iyP~YDFa-~~i~D~~egiTHsl~t----~Ef~~~-r 240 (556) T PRK05347 168 FPEGSAVLRAKIDMASPNINMRDPVLYRIRHAHHHRTGDKWC-IYPMYDFA-HCISDAIEGITHSLCT----LEFEDH-R 240 (556) T ss_pred CCCCEEEEEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCEE-ECCCCCCC-CCHHHHHCCCCEEEEC----CCCCCC-H T ss_conf 778628999985148999541245257842468888688226-61242124-2314565387424204----741005-4 Q ss_pred HHHHHHH--HCC-CCCCHHHEECCCEEEEEECCCCCCCCCCCCHHHHHCCCC--------------CCCCCCCHHHHHHH Q ss_conf 6688886--408-753012100343257642022332332140899850253--------------34557779999999 Q gi|254780573|r 248 EIAQSCC--ADR-IEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK--------------FGGRSWPAPVIRLA 310 (461) Q Consensus 248 EiAQs~a--~~~-~~~~a~yWlH~G~l~i~geKMSKSlGN~iti~dlL~~~~--------------~~~k~y~p~viR~~ 310 (461) T Consensus 241 ~~Y~w~~~~l~~~~~P--~-~~ef~Rln~~~tvlSKr-----kl~~lV~~g~v~GWDDPRlpTl~glrRRG~~peAi~~F 312 (556) T PRK05347 241 PLYDWVLDNLPIPPHP--R-QYEFSRLNLTYTVMSKR-----KLKQLVEEKHVDGWDDPRMPTISGLRRRGYTPESIREF 312 (556) T ss_pred HHHHHHHHHCCCCCCC--E-EEEEEEEEEEEEECCHH-----HHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHH T ss_conf 6576603402788883--4-88863466520222088-----99999975976787787505668887569998999999 Q ss_pred HHCCCCCC-CCCCCHHHHHHHH Q ss_conf 84256643-2114503468777 Q gi|254780573|r 311 MLMTHYRE-PIDFTVQRLTEAE 331 (461) Q Consensus 311 lLsshYRs-pLdfS~e~L~~A~ 331 (461) T Consensus 313 ~~~~Gvsk~~~~i~~~~l~~~~ 334 (556) T PRK05347 313 CERIGVTKQDSVIDMSMLESCI 334 (556) T ss_pred HHHHCCCCCCEEECHHHHHHHH T ss_conf 9984854444053299999999 |
|
| >TIGR00463 gltX_arch glutamyl-tRNA synthetase; InterPro: IPR004526 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.7e-08 Score=77.92 Aligned_cols=281 Identities=21% Similarity=0.283 Sum_probs=173.1 Q ss_pred EEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCH Q ss_conf 23304798479996167888844411127999999999999970799845799605523388899998708986448848 Q gi|254780573|r 17 EFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAI 96 (461) Q Consensus 17 ~f~p~~~~~v~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~ 96 (461) T Consensus 93 eL~~ak~G~VV~R-FaPnPsGpLhiGhArAa~lN~~fa~~---Y~G----klIlR~dDTdP~tk-r-------------- 149 (600) T TIGR00463 93 ELPGAKKGEVVMR-FAPNPSGPLHIGHARAAILNQYFAKK---YEG----KLILRFDDTDPRTK-R-------------- 149 (600) T ss_pred CCCCCCCCCEEEE-CCCCCCCCCCHHHHHHHHHHHHHHHH---CCC----CEEEEEECCCCCCC-C-------------- T ss_conf 7778765735773-18545458752335422320466854---188----17999755878878-8-------------- Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHH---CCCCCCCCCC-C--- Q ss_conf 99999999999998776268541000123567777899999874114320128928752200---2454322467-5--- Q gi|254780573|r 97 SIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSS---IPNYGSFSRR-K--- 169 (461) Q Consensus 97 ~~~a~~~~~~f~~d~~~L~v~~p~~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~---~~~YG~Ls~~-~--- 169 (461) T Consensus 150 --~~~Eayd~i~eDLdwLG~k~-Dev~y~Sdr~~~yYdY~~kLIe~G~AY~C~c----~~Eefre~r~~G~~c~~R~~sv 222 (600) T TIGR00463 150 --VKPEAYDMILEDLDWLGVKG-DEVVYQSDRIEIYYDYARKLIEMGKAYVCDC----SPEEFRELRNKGVACACRDRSV 222 (600) T ss_pred --CCHHHHHHHHHHHHHCCCCE-EEEEEEECCHHHHHHHHHHHHHCCCCEECCC----CCHHHHHHHCCCCCCCCCCCCH T ss_conf --87246652487787528420-0689830530156899999986698343279----8446888633888777787512 Q ss_pred ------H-HHHHHHH--------HCCCCCCCCCC--CCEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCEE Q ss_conf ------4-6666432--------10222210123--51266633776663141467766764332047777875298414 Q gi|254780573|r 170 ------I-DEQKMGT--------RVPEKYHKKNP--ADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFD 232 (461) Q Consensus 170 ------~-~~~~~g~--------r~~~~~~K~~p--~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~D 232 (461) T Consensus 223 eenL~~wte~M~~G~~E~~~~~vR~KtD~~h~npaiRD~v~fR~~~~~HprtG~~Y-~vYP~~dF-~vai~DhllGvTH~ 300 (600) T TIGR00463 223 EENLEIWTEEMLEGEEEEGKVVVRVKTDLKHKNPAIRDWVIFRIVKTPHPRTGDKY-KVYPTMDF-SVAIDDHLLGVTHV 300 (600) T ss_pred HHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCE-EECCCCCC-CCHHHHHCCCCHHH T ss_conf 45788999871577301660289987136788786347613577757888868822-68122266-54243210232032 Q ss_pred EEEECCCCCCCCCHHHHHHHHHH--CCCCCCHHHEECCCEEEEEEC-CCCCCC-CCCCCHHHHHCC---------CCCCC Q ss_conf 87413566668751366888864--087530121003432576420-223323-321408998502---------53345 Q gi|254780573|r 233 IHGGGLDLIFPHHENEIAQSCCA--DRIEKTANIWIHNGFLNLEGR-KMSKSN-GNFITINELLET---------KKFGG 299 (461) Q Consensus 233 IH~GG~DL~FPHHENEiAQs~a~--~~~~~~a~yWlH~G~l~i~ge-KMSKSl-GN~iti~dlL~~---------~~~~~ 299 (461) T Consensus 301 L--Rgkd----~~~n~~~q~Y~Y~y~gw~--~p~~~hyg~~ki~~v~~Lsts~~~~~i~~g~y~GnWDDpRLpTlRa~rR 372 (600) T TIGR00463 301 L--RGKD----HIDNERKQQYIYKYFGWE--LPEFIHYGRLKINDVRTLSTSSIKKGIVRGDYSGNWDDPRLPTLRAVRR 372 (600) T ss_pred H--HHHH----HHHHHHHHHHHHHHHCCC--CCCEEEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHC T ss_conf 3--1024----552126788999983223--8802344115511332321034541101265124656888630233211 Q ss_pred CCCCHHHHHHHHHCCCC-CCCCCCCHHHHHHH-HHHHHHC Q ss_conf 57779999999842566-43211450346877-7643210 Q gi|254780573|r 300 RSWPAPVIRLAMLMTHY-REPIDFTVQRLTEA-EILLSKW 337 (461) Q Consensus 300 k~y~p~viR~~lLsshY-RspLdfS~e~L~~A-~~~l~kl 337 (461) T Consensus 373 RG~~pEai~~~~~~~G~~~nd~~~sw~~lYA~Nk~~id~~ 412 (600) T TIGR00463 373 RGIKPEAIREFMLSIGVKRNDVKLSWKNLYALNKKIIDKK 412 (600) T ss_pred CCCCHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHCCCC T ss_conf 7881578999999719961244312567766235540324 |
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of E. coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure . ; GO: 0000166 nucleotide binding, 0004818 glutamate-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006424 glutamyl-tRNA aminoacylation, 0005737 cytoplasm. |
| >TIGR00456 argS arginyl-tRNA synthetase; InterPro: IPR001278 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.4e-05 Score=58.51 Aligned_cols=273 Identities=16% Similarity=0.153 Sum_probs=163.7 Q ss_pred CCEEEEEEC---CCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC-------------- Q ss_conf 826223304---798479996167888844411127999999999999970799845799605523-------------- Q gi|254780573|r 13 RKITEFQAI---DPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDI-------------- 75 (461) Q Consensus 13 ~~~~~f~p~---~~~~v~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDi-------------- 75 (461) T Consensus 104 ~~~e~yG~~~~~~~~ki~~EfsSaNp~gplH~GHlR~aiIGD~L~r~l~~~G~~--V~r~yyVND~G~Q~~~l~~~~~~~ 181 (600) T TIGR00456 104 EQKEKYGSKKLKESKKIIIEFSSANPAGPLHIGHLRNAIIGDSLARILEFLGYD--VIREYYVNDWGRQIGLLVLGVEKF 181 (600) T ss_pred HCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC--EEEEEEECCHHHHHHHHHHHHHHH T ss_conf 012024676657870799987658889761100002577788999999875970--798520054289999999999985 Q ss_pred ---------------CH--------------H------HHHHHHH-----CCCC--CCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf ---------------38--------------8------8999987-----0898--644884899999999999998776 Q gi|254780573|r 76 ---------------DD--------------K------IIERARQ-----EHPS--IPINDAISIITSKNTQQFVKDTTR 113 (461) Q Consensus 76 ---------------dD--------------k------ii~~a~~-----~~~~--~~~~~~~~~~a~~~~~~f~~d~~~ 113 (461) T Consensus 182 ~~e~~~~~~~~~~~~~~~~y~~~~k~~~e~~~~~~~~s~~~~~~~~~~~~e~gdnNe~~~~~w~~~~~~~l~~~k~tl~~ 261 (600) T TIGR00456 182 GNEKETAVKKPDHGLEGFDYVEINKRLEENEEPINKQSLEEEARELFVKLESGDNNEKTIKLWKRLVEYALEGIKETLKR 261 (600) T ss_pred CCHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 12132026687420123588898878861777653335457899999974324442899999999999999999999986 Q ss_pred HCCCCCCHH-HHHHHHHHHHHHHHHHHH-HCCCCCCCCCCEEECCHHCCCC---CCCCCCCHHHHHHHHHCCCCCCCCCC Q ss_conf 268541000-123567777899999874-1143201289287522002454---32246754666643210222210123 Q gi|254780573|r 114 LACLAPTHQ-PRATNHIPQMIYLIQNII-LHGHAYEANNEIIFDTSSIPNY---GSFSRRKIDEQKMGTRVPEKYHKKNP 188 (461) Q Consensus 114 L~v~~p~~~-pr~t~~i~~~i~~i~~L~-~~g~aY~~~g~VyFdv~~~~~Y---G~Ls~~~~~~~~~g~r~~~~~~K~~p 188 (461) T Consensus 262 lni~~D~~~~E~E~~~~~~~~~v~e~L~k~~gl~~ed~gA~~~~L~~f~d~kadG~-----------------------~ 318 (600) T TIGR00456 262 LNIHFDEFVWEGESVKNGKVPKVLEDLKKEKGLVVEDDGALWLDLTEFGDKKADGD-----------------------E 318 (600) T ss_pred HCCCEEEEEECCEEEECCCHHHHHHHHHHHCCCEEECCCEEEEECCCCCCCCCCCC-----------------------C T ss_conf 29650058854045774860789998631037806747348997577666212676-----------------------4 Q ss_pred CCEEEEECCCCCCCEEECCCCCCCCCCCCHHH-HHHHH--HCCC--CEEEEEECCCCCCCCCHHHHHHHHHHCC-CC--C Q ss_conf 51266633776663141467766764332047-77787--5298--4148741356666875136688886408-75--3 Q gi|254780573|r 189 ADFILWKRSTPMEPGWESPWGRGRPGWHIECS-AMSSH--YLGK--VFDIHGGGLDLIFPHHENEIAQSCCADR-IE--K 260 (461) Q Consensus 189 ~DFaLWK~~~~~e~~w~spwG~GRPGWHiECs-am~~~--~lg~--~~DIH~GG~DL~FPHHENEiAQs~a~~~-~~--~ 260 (461) T Consensus 319 k~~Vl~k~--DGt~~Y~T~-----------DiAyh~~k~~~~~~d~~i~V~gs-------dh~~h~~q~~~~~e~LG~~~ 378 (600) T TIGR00456 319 KDRVLIKS--DGTYLYLTR-----------DIAYHLDKLERLGFDKLIYVWGS-------DHKLHIAQVFAILEKLGYLS 378 (600) T ss_pred CCEEEEEE--CCCCCCHHH-----------HHHHHHHHHHHCCCEEEEEEEEC-------CHHHHHHHHHHHHHHCCCCC T ss_conf 56478850--895010598-----------99999998734397289987405-------18889999999999716537 Q ss_pred CHHHEECCCEEEEEE---CCCCCCCCCCCCHHHHHCCCCCC------C---------------CCCCHHHHHHHHHCCCC Q ss_conf 012100343257642---02233233214089985025334------5---------------57779999999842566 Q gi|254780573|r 261 TANIWIHNGFLNLEG---RKMSKSNGNFITINELLETKKFG------G---------------RSWPAPVIRLAMLMTHY 316 (461) Q Consensus 261 ~a~yWlH~G~l~i~g---eKMSKSlGN~iti~dlL~~~~~~------~---------------k~y~p~viR~~lLsshY 316 (461) T Consensus 379 ~~~~L~~~~f~~v~~~~GKkmkTR~G~~i~ld~ll~e~~~RA~~~~~~~~~~~~~~e~~e~~a~~vG~gAvry~~l~~~~ 458 (600) T TIGR00456 379 KKKELEHLEFGMVPLGSGKKMKTRRGNVISLDNLLDEASKRAGNVITKRNTDLEQDEAEEKVADAVGIGAVRYADLSKNR 458 (600) T ss_pred CCCCEEEEEEEEEECCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 88616899876432578885434556602234468999999999996110135222037899999736799999997278 Q ss_pred CCCCCCCHH-HHHHH Q ss_conf 432114503-46877 Q gi|254780573|r 317 REPIDFTVQ-RLTEA 330 (461) Q Consensus 317 RspLdfS~e-~L~~A 330 (461) T Consensus 459 ~~~~~Fd~d~~~L~f 473 (600) T TIGR00456 459 ETHYVFDWDTAMLSF 473 (600) T ss_pred CCCCEEECCCHHHCC T ss_conf 988155012011115 |
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Arginyl-tRNA synthetase (6.1.1.19 from EC) has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available . ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm. |
| >TIGR00464 gltX_bact glutamyl-tRNA synthetase; InterPro: IPR004527 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00018 Score=52.36 Aligned_cols=243 Identities=19% Similarity=0.289 Sum_probs=154.4 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 78888444111279999999999999707998457996055233888999987089864488489999999999999877 Q gi|254780573|r 33 PTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTT 112 (461) Q Consensus 33 pTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~~~~f~~d~~ 112 (461) T Consensus 8 PSPTG~LHiGg~RTAlFNyLfAr---~~~G~----F~lRiEDTD~---eR~~~----------------e~~~~i~e~Lk 61 (513) T TIGR00464 8 PSPTGYLHIGGARTALFNYLFAR---HTGGK----FILRIEDTDL---ERNIE----------------EAEESILEGLK 61 (513) T ss_pred CCCCCCCCHHHHHHHHHHHHHHH---HCCCC----EEEEEEECCC---CCCCH----------------HHHHHHHHHHH T ss_conf 88875435336899999999998---63893----7998753671---00724----------------46899998887 Q ss_pred HHCCCCCC--------HHHHHHHHHHHHHHHHHHHHHCCCCCC---------CCC-CE-EECCHHCCCCC-C---CCCCC Q ss_conf 62685410--------001235677778999998741143201---------289-28-75220024543-2---24675 Q gi|254780573|r 113 RLACLAPT--------HQPRATNHIPQMIYLIQNIILHGHAYE---------ANN-EI-IFDTSSIPNYG-S---FSRRK 169 (461) Q Consensus 113 ~L~v~~p~--------~~pr~t~~i~~~i~~i~~L~~~g~aY~---------~~g-~V-yFdv~~~~~YG-~---Ls~~~ 169 (461) T Consensus 62 WlGi~wDEs~~~gG~Y~Py~QS~R~~~Y~~~~~~Ll~~g~AYrCYCs~E~LE~~Rke~~q~~~~~~PrYd~~cr~l~~~~ 141 (513) T TIGR00464 62 WLGISWDESVYVGGNYGPYYQSQRLDIYKKYIKELLEEGLAYRCYCSKEELERLRKEEIQKANKETPRYDGRCRNLHEEE 141 (513) T ss_pred HCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHH T ss_conf 45867466756898630111013678999999999745993442278467889989999970885348375334787137 Q ss_pred HHHHHH-HH----H--CCCC---------------CCCCC-----CCCEEEEECC-CCCCCEEECCCCCCCCCCCCHHHH Q ss_conf 466664-32----1--0222---------------21012-----3512666337-766631414677667643320477 Q gi|254780573|r 170 IDEQKM-GT----R--VPEK---------------YHKKN-----PADFILWKRS-TPMEPGWESPWGRGRPGWHIECSA 221 (461) Q Consensus 170 ~~~~~~-g~----r--~~~~---------------~~K~~-----p~DFaLWK~~-~~~e~~w~spwG~GRPGWHiECsa 221 (461) T Consensus 142 ~~~~l~~~~~pvvRfK~P~~~~~~F~D~v~G~i~~~~~~l~~dkrydD~vi~k~DenPee-------afG~PTYNfAvv- 213 (513) T TIGR00464 142 IENKLAKGIPPVVRFKIPQEAEISFNDQVRGEITFEGSELDNDKRYDDLVILKSDENPEE-------AFGSPTYNFAVV- 213 (513) T ss_pred HHHHHHCCCCCEEEEECCCCCCEEECCEEEEEEEECCCCCCCCCCCCCEEEEECCCCHHH-------HCCCCCCCEEEE- T ss_conf 887644379966887407998424505022158855866786644156126406888322-------148864250678- Q ss_pred HHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCHHHEECCCEE-EEEECCCCCCCC-CCCCHHHHHCCCCCCC Q ss_conf 77875298414874135666687513668888640875301210034325-764202233233-2140899850253345 Q gi|254780573|r 222 MSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFL-NLEGRKMSKSNG-NFITINELLETKKFGG 299 (461) Q Consensus 222 m~~~~lg~~~DIH~GG~DL~FPHHENEiAQs~a~~~~~~~a~yWlH~G~l-~i~geKMSKSlG-N~iti~dlL~~~~~~~ 299 (461) T Consensus 214 -vDD~l-M~IThViRGedHis-NTPkQI~iy~Alg~~~iP-~-f~H~p~I~~~~gKKLSKRdg~~~~si~q~~~------ 282 (513) T TIGR00464 214 -VDDYL-MKITHVIRGEDHIS-NTPKQILIYKALGWKRIP-T-FAHLPLILNEDGKKLSKRDGKTATSIEQFKE------ 282 (513) T ss_pred -EECCC-CCCCEEEECCHHHC-CCHHHHHHHHHCCCCCCC-C-EEEEEEEECCCCCEEECCCCHHHHHHHHHHH------ T ss_conf -85332-55451441202006-718999999970889888-1-5535358569884001206402576899986------ Q ss_pred CCCCHHHHHHHHHCCCCCCCC Q ss_conf 577799999998425664321 Q gi|254780573|r 300 RSWPAPVIRLAMLMTHYREPI 320 (461) Q Consensus 300 k~y~p~viR~~lLsshYRspL 320 (461) T Consensus 283 ~GyLPEAl~Nyl~lLGW~~~~ 303 (513) T TIGR00464 283 QGYLPEALINYLALLGWSPPD 303 (513) T ss_pred CCCCHHHHHHHHHHHCCCCCC T ss_conf 688778999999984689652 |
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of E. coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure . ; GO: 0000166 nucleotide binding, 0004818 glutamate-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006424 glutamyl-tRNA aminoacylation, 0005737 cytoplasm. |
| >cd00395 Tyr_Trp_RS_core Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00024 Score=51.43 Aligned_cols=204 Identities=19% Similarity=0.130 Sum_probs=97.8 Q ss_pred ECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 16788884441112799999999999997079984579960552338889999870898644884899999999999998 Q gi|254780573|r 31 CGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 (461) Q Consensus 31 CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~~~~f~~d 110 (461) T Consensus 5 ~G~~PTg~lHlG~~v---~~~~~~~~q~-~g~~-~~~~---iaD~~a~~~d~~----------~-~~~~i~~~~~~~~~~ 65 (274) T cd00395 5 SGIDPTGSLHLGHYV---GAIKLKVLQQ-AGHE-VIIL---IADLHALTGDPS----------L-DPEEIRKNAREIAKQ 65 (274) T ss_pred EEECCCCCCHHHHHH---HHHHHHHHHH-CCCC-EEEE---EECCCCCCCCCC----------C-CHHHHHHHHHHHHHH T ss_conf 905888714689999---9999999998-8998-8999---907711437999----------9-999999999999999 Q ss_pred HHHHCCCCCCH-HHHHHHHHH--HHHHHHHHHHHCCCCCCCCCCEEECCHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCC Q ss_conf 77626854100-012356777--789999987411432012892875220024543224675466664321022221012 Q gi|254780573|r 111 TTRLACLAPTH-QPRATNHIP--QMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKN 187 (461) Q Consensus 111 ~~~L~v~~p~~-~pr~t~~i~--~~i~~i~~L~~~g~aY~~~g~VyFdv~~~~~YG~Ls~~~~~~~~~g~r~~~~~~K~~ 187 (461) T Consensus 66 ~~a~g~d~~k~~i~~~S~~~~~~~~~~l~~~l-----------------------~~~--~~~~~l~~~~~~k~r~~~~~ 120 (274) T cd00395 66 ILALGLDPEKATIVFQSDWLLKLEHLELLRLL-----------------------GKH--VTVGRLLRMDGFKDRLAEEE 120 (274) T ss_pred HHHHCCCHHHCEEEEHHHHCCCHHHHHHHHHH-----------------------HCC--CCHHHHHHHHHHHHHHHCCC T ss_conf 99977994772786323107725699999999-----------------------673--76889973367887762368 Q ss_pred CCCEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCHH--HHHHHHHHCCCCCCHHHE Q ss_conf 351266633776663141467766764332047777875298414874135666687513--668888640875301210 Q gi|254780573|r 188 PADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHEN--EIAQSCCADRIEKTANIW 265 (461) Q Consensus 188 p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~FPHHEN--EiAQs~a~~~~~~~a~yW 265 (461) T Consensus 121 ~~~--------~~~~~YP--------------~lQaaDil~~~~~~v~~G~D-Q~~~~~l~Rdia~k~~-~~~~p~~--- 173 (274) T cd00395 121 GIS--------LGEFTYP--------------VLQAADILLLKADLVPGGSD-QDPHIELGRDLARRFN-GFKKPVA--- 173 (274) T ss_pred CCC--------CCEEECC--------------HHHHHHHHHHCCCCCCCCCC-HHHHHHHHHHHHHHHC-CCCCCEE--- T ss_conf 977--------0023243--------------07653177650654555611-7999999999999944-9999868--- Q ss_pred ECCCE-EEEEE-CCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCC Q ss_conf 03432-57642-02233233214089985025334557779999999842566 Q gi|254780573|r 266 IHNGF-LNLEG-RKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHY 316 (461) Q Consensus 266 lH~G~-l~i~g-eKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~lLsshY 316 (461) T Consensus 174 l~~~~l~~l~G~~KMSKS~~ns~i--~l~---------Dsp~~i~~KI~~a~t 215 (274) T cd00395 174 LTSPLLTGLDGGKKMSKSDGNAII--FLL---------DSPEEIYKKIMKAYT 215 (274) T ss_pred EECCCCCCCCCCCCCCCCCCCCEE--ECC---------CCHHHHHHHHEECCC T ss_conf 723774468997674578998446--546---------999999998722408 |
These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding. |
| >KOG1147 consensus | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00014 Score=53.01 Aligned_cols=254 Identities=17% Similarity=0.256 Sum_probs=130.7 Q ss_pred CEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHH Q ss_conf 84799961678888444111279999999999999707998457996055233888999987089864488489999999 Q gi|254780573|r 24 SNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN 103 (461) Q Consensus 24 ~~v~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~ 103 (461) T Consensus 199 GkVv~-RFPPEpSGyLHIGHAKAA----LLNqYfa~~~~G---~LIvRFDDT-----NPaK--------------E~~eF 251 (712) T KOG1147 199 GKVVT-RFPPEPSGYLHIGHAKAA----LLNQYFAQAYQG---KLIVRFDDT-----NPAK--------------ENEEF 251 (712) T ss_pred CCEEE-ECCCCCCCEEEHHHHHHH----HHHHHHHHHCCC---EEEEEECCC-----CCCH--------------HHHHH T ss_conf 72578-569897760241167999----999999985286---299982699-----9202--------------16789 Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHC--C-CCCCCCCC----------CH Q ss_conf 99999987762685410001235677778999998741143201289287522002--4-54322467----------54 Q gi|254780573|r 104 TQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI--P-NYGSFSRR----------KI 170 (461) Q Consensus 104 ~~~f~~d~~~L~v~~p~~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~~--~-~YG~Ls~~----------~~ 170 (461) T Consensus 252 e~~IleDl~~LgIk-pd~~TyTSDyF~~i~dycv~likeGKAYvDDTp----~E~Mr~ER~~gv~Sk~R~~~vEenl~iw 326 (712) T KOG1147 252 EDVILEDLSLLGIK-PDRVTYTSDYFDEIMDYCVKLIKEGKAYVDDTP----TEQMRDEREQGVESKCRSNSVEENLRIW 326 (712) T ss_pred HHHHHHHHHHHCCC-CCEEEECHHHHHHHHHHHHHHHHCCCCCCCCCC----HHHHHHHHHCCCCCCCCCCCHHHHHHHH T ss_conf 99998778870857-644453135599999999999863743136996----8999988760520002378877889999 Q ss_pred HHHHHHHH----------CCCCCCCCCCCCEEEEECCCCC-CCEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCC Q ss_conf 66664321----------0222210123512666337766-631414677667643320477778752984148741356 Q gi|254780573|r 171 DEQKMGTR----------VPEKYHKKNPADFILWKRSTPM-EPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239 (461) Q Consensus 171 ~~~~~g~r----------~~~~~~K~~p~DFaLWK~~~~~-e~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~D 239 (461) T Consensus 327 ~EM~kGs~~Gl~~CvRaKIdm~s~NkaMRDPviYRc-n~~pHhRTG~KY-kvYPTYDFaCPIVDs-l---------EGVT 394 (712) T KOG1147 327 EEMKKGSEKGLKCCVRAKIDMSSPNKAMRDPVIYRC-NPEPHHRTGDKY-KVYPTYDFACPIVDS-L---------EGVT 394 (712) T ss_pred HHHHCCCHHHHHHHEEEEECCCCCCCCCCCCEEEEC-CCCCCCCCCCCE-EEECCCCCCCCCCHH-H---------HHHH T ss_conf 998644613111102466056588754348725761-798877678730-330454424522002-4---------3245 Q ss_pred CCC----CCCHHHHHHHHH-HCCCCCCHHHEECCCEEEEEECCCCCCCC---------------CCCCHHHHHCCCCCCC Q ss_conf 666----875136688886-40875301210034325764202233233---------------2140899850253345 Q gi|254780573|r 240 LIF----PHHENEIAQSCC-ADRIEKTANIWIHNGFLNLEGRKMSKSNG---------------NFITINELLETKKFGG 299 (461) Q Consensus 240 L~F----PHHENEiAQs~a-~~~~~~~a~yWlH~G~l~i~geKMSKSlG---------------N~iti~dlL~~~~~~~ 299 (461) T Consensus 395 haLRttEYhDRn~Qyyw~i~al~LRk-p~iwef-sRlN~~nTvLSKRKLtwfVd~GlV~GWDDPRfpTVrGv~------R 466 (712) T KOG1147 395 HALRTTEYHDRNAQYYWFIDALGLRK-PHIWEF-SRLNFVNTVLSKRKLTWFVDEGLVDGWDDPRFPTVRGVR------R 466 (712) T ss_pred HHHHHHHCCCCCHHHHHHHHHHCCCC-CCEEEH-HHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCHHHHHH------H T ss_conf 66530000354167999999746786-110002-232247666533100145416753677787760157788------7 Q ss_pred CCCCHHHHHHHHH-CCCCCCCCCCCHHHHHH Q ss_conf 5777999999984-25664321145034687 Q gi|254780573|r 300 RSWPAPVIRLAML-MTHYREPIDFTVQRLTE 329 (461) Q Consensus 300 k~y~p~viR~~lL-sshYRspLdfS~e~L~~ 329 (461) T Consensus 467 rGmtvEgLkqfIl~QG~Sk~v~~meWdkiWA 497 (712) T KOG1147 467 RGMTVEGLKQFILAQGPSKNVVTMEWDKIWA 497 (712) T ss_pred CCCCHHHHHHHHHHHCCCCCEEEEEHHHHHH T ss_conf 3761999999999748765426641376554 |
|
| >TIGR00467 lysS_arch lysyl-tRNA synthetase; InterPro: IPR002904 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0038 Score=42.88 Aligned_cols=285 Identities=15% Similarity=0.197 Sum_probs=142.6 Q ss_pred CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCH---------HHHHHHHHC---CCCC Q ss_conf 9847999616788884441112799999999999997079984579960552338---------889999870---8986 Q gi|254780573|r 23 PSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDD---------KIIERARQE---HPSI 90 (461) Q Consensus 23 ~~~v~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidD---------kii~~a~~~---~~~~ 90 (461) T Consensus 17 ~~~~~~~~~g~~p~g~~~~g~~~~~~~~d~~~~~l~~~g~~~~~~~~~d~~d~~~~~~~~~p~~~~~~~~~~~~~~~~p~ 96 (539) T TIGR00467 17 PANLYTVASGITPSGHIHLGNLREVLTADAIARALLDSGGEAKLIYIADDYDPLRKLYPFLPEQEELETYLGLPLTKIPD 96 (539) T ss_pred CCCCEEEECCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHCCCCCCHHHHHHHHHHHHHCCCC T ss_conf 53210332046766603304214567688888887506761478885245103443045675067888874101220678 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCH--------------HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECC Q ss_conf 4488489999999999999877626854100--------------01235677778999998741143201289287522 Q gi|254780573|r 91 PINDAISIITSKNTQQFVKDTTRLACLAPTH--------------QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDT 156 (461) Q Consensus 91 ~~~~~~~~~a~~~~~~f~~d~~~L~v~~p~~--------------~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv 156 (461) T Consensus 97 ~-~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~l~~~w-~p~ 170 (539) T TIGR00467 97 P-EGCCDSYAEHFLRPFLESLPVLGIPPEFYRADENYTEGLYDSKIKIALDNREELAEILNEYR----GSPLEEDW-YPI 170 (539) T ss_pred C-CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH----CCCCCCCC-CCC T ss_conf 5-42024566666656676422116760211013444201012112333310678999987640----46564323-320 Q ss_pred HHC-CCCCCCCCCCHHHHHHHHHC--CCC-CCCCCCCCE-EEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCE Q ss_conf 002-45432246754666643210--222-210123512-6663377666314146776676433204777787529841 Q gi|254780573|r 157 SSI-PNYGSFSRRKIDEQKMGTRV--PEK-YHKKNPADF-ILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVF 231 (461) Q Consensus 157 ~~~-~~YG~Ls~~~~~~~~~g~r~--~~~-~~K~~p~DF-aLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~ 231 (461) T Consensus 171 ~~~c~~c~~~~~~~~~~~~~~~~~~~~c~~cg~~~~~~~~~~~~~~l~w~~dw~~~w~~----~~--------------~ 232 (539) T TIGR00467 171 SPLCENCGRLTTTVVNYDDEYEWIEYECEICGNEGSVGPRYTGGGKLPWRVDWPARWKI----LK--------------V 232 (539) T ss_pred HHHHHCCCCCCCEEECCCCCCCEEEEEEEECCCCCCCCCCEECCCCCCEEECCCCCCEE----EE--------------E T ss_conf 24332035310002102443222677643316655444201023112122031000113----33--------------2 Q ss_pred EEEEECCCCCCCCCHHHH---HHHHHHCC--CCCCHHHEECCCEEEE--EECCCCCCCCCCCCHHHHHCCCCCCCCCCCH Q ss_conf 487413566668751366---88886408--7530121003432576--4202233233214089985025334557779 Q gi|254780573|r 232 DIHGGGLDLIFPHHENEI---AQSCCADR--IEKTANIWIHNGFLNL--EGRKMSKSNGNFITINELLETKKFGGRSWPA 304 (461) Q Consensus 232 DIH~GG~DL~FPHHENEi---AQs~a~~~--~~~~a~yWlH~G~l~i--~geKMSKSlGN~iti~dlL~~~~~~~k~y~p 304 (461) T Consensus 233 ~~~p~g~d~~~~gg~~d~~~~~~~~~~~~~pp~~~~~~~~~~---~~gd~~~~~~~~~g~~~~~~~~~-------~~~~p 302 (539) T TIGR00467 233 TFEPAGKDHAAAGGSYDTGVLIAKEIFDYEPPYPVPYEWISL---KGGDKGGPLSSSKGDVLPVKDWL-------EVYPP 302 (539) T ss_pred ECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEE---ECCCCCCCCCCCCCCEEEHHHHH-------HHCCH T ss_conf 104367520015764102467888875057884202324565---02542332323456323233454-------42143 Q ss_pred HHHHHHHHCCCC--CCCCCCCHHHHHHHHHHHHHCCCCC Q ss_conf 999999842566--4321145034687776432100001 Q gi|254780573|r 305 PVIRLAMLMTHY--REPIDFTVQRLTEAEILLSKWPQTS 341 (461) Q Consensus 305 ~viR~~lLsshY--RspLdfS~e~L~~A~~~l~kl~~~~ 341 (461) T Consensus 303 ~~~~~~~~~~~p~~~~~~~~d~~~~~d~~~~~d~~~~~~ 341 (539) T TIGR00467 303 EILRFLLLRTKPNTEKHIDFDLGKIPDLGDDYDKLEDFY 341 (539) T ss_pred HHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHH T ss_conf 575554531167752122024023235677777777776 |
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and some eubacteria . Moreover in some eubacteria there is a gene X, which is similar to a part of lysyl-tRNA synthetase from class II. Lysyl-tRNA synthetase is duplicated in some species with, for example in E. coli, as a constitutive gene (lysS) and an induced one (lysU). A refined crystal structures shows that the active site of lysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding .; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm. |
| >PRK08560 tyrosyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00023 Score=51.60 Aligned_cols=204 Identities=19% Similarity=0.181 Sum_probs=99.2 Q ss_pred EEEEEE-ECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHH Q ss_conf 479996-1678888444111279999999999999707998457996055233888999987089864488489999999 Q gi|254780573|r 25 NIRMYV-CGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN 103 (461) Q Consensus 25 ~v~~Y~-CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~ 103 (461) T Consensus 30 ~~rv~~G~~PT--G~lHLGh~v---~~~k~-~~lQd~g~~--~~~~--IaD~hA~i-~~----------~~~~~-~~r~~ 87 (333) T PRK08560 30 EPKAYIGFEPS--GFIHLGHLV---TMNKL-ADLQKAGFK--VTVL--LADWHAWL-ND----------KGDLE-EIRKV 87 (333) T ss_pred CCEEEECCCCC--CCCHHHHHH---HHHHH-HHHHHCCCC--EEEE--ECCCEEEC-CC----------CCCHH-HHHHH T ss_conf 98899661789--845389999---99999-999977991--8999--61322333-89----------99999-99999 Q ss_pred HHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHCCCCCCCCCCCHHHHHHHHHCCCC Q ss_conf 999999877626854100-0123567777899999874114320128928752200245432246754666643210222 Q gi|254780573|r 104 TQQFVKDTTRLACLAPTH-QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182 (461) Q Consensus 104 ~~~f~~d~~~L~v~~p~~-~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~~~~YG~Ls~~~~~~~~~g~r~~~~ 182 (461) T Consensus 88 ~~~~~~~~~A~GlDp~k~~i~~qS~-~~~~~e~~~-----------------~~~~l~~~~tl~r-----~~~~~~~~~~ 144 (333) T PRK08560 88 AEYNKKVFEALGLDPDKTEFVLGSE-FQLDPEYWL-----------------LVLKLAKNTTLAR-----ARRSMTIMGR 144 (333) T ss_pred HHHHHHHHHHHCCCCCCEEEEECCC-CCCCHHHHH-----------------HHHHHHCCCCHHH-----HHHHHHHHHH T ss_conf 9999999997078964239998986-246756999-----------------9999806473999-----9887888755 Q ss_pred CCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCHH--HHHHHHHHCCCCC Q ss_conf 21012351266633776663141467766764332047777875298414874135666687513--6688886408753 Q gi|254780573|r 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHEN--EIAQSCCADRIEK 260 (461) Q Consensus 183 ~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~FPHHEN--EiAQs~a~~~~~~ 260 (461) T Consensus 145 -~~~~~~~~--------g~~~--------YP------vlQaaDil~~~adi~~~G~DQ~~-~~~L~Rdia~rf~--~~~p 198 (333) T PRK08560 145 -KMEEPIDV--------SKLV--------YP------LMQVADIFYLDVDIAVGGMDQRK-AHMLAREVLPKLG--YKKP 198 (333) T ss_pred -CCCCCCCE--------EEEE--------CH------HHHHHHHHHCCCCCCCCCCCHHH-HHHHHHHHHHHCC--CCCC T ss_conf -05899753--------1231--------42------77650687527995531543089-9999999999839--9997 Q ss_pred CHHHEECCCEE-EEEE-------CCCCCC-CCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHCC Q ss_conf 01210034325-7642-------022332-332140899850253345577799999998425 Q gi|254780573|r 261 TANIWIHNGFL-NLEG-------RKMSKS-NGNFITINELLETKKFGGRSWPAPVIRLAMLMT 314 (461) Q Consensus 261 ~a~yWlH~G~l-~i~g-------eKMSKS-lGN~iti~dlL~~~~~~~k~y~p~viR~~lLss 314 (461) T Consensus 199 ~~---l~~p~l~gl~g~~~~~~~~KMSkS~~~~~I~l~D------------~~~~i~kKI~~a 246 (333) T PRK08560 199 VA---IHTPLLTGLDGGGEVLAEIKMSKSKPGSAIFVHD------------SPEEIRRKIKKA 246 (333) T ss_pred EE---EECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC------------CHHHHHHHHHHC T ss_conf 57---5257545687877779988678899999474158------------999999999856 |
|
| >KOG1149 consensus | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.05 Score=34.88 Aligned_cols=234 Identities=21% Similarity=0.290 Sum_probs=135.5 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 67888844411127999999999999970799845799605523388899998708986448848999999999999987 Q gi|254780573|r 32 GPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDT 111 (461) Q Consensus 32 GpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~~~~f~~d~ 111 (461) T Consensus 39 APSPTGfLHlGgLRTALfNYLfAr---k~gG----kFiLRiEDTDq~R~v~-------------------gs~e~i~~~L 92 (524) T KOG1149 39 APSPTGFLHLGGLRTALFNYLFAR---KKGG----KFILRIEDTDQKRLIR-------------------GSEEAIYEDL 92 (524) T ss_pred CCCCCCCEEHHHHHHHHHHHHHHH---HCCC----EEEEEECCCCCCCCCC-------------------CHHHHHHHHH T ss_conf 589876322013899999999987---3288----4899851565100046-------------------4477899999 Q ss_pred HHHCCCCCCHHHHH---------HHHHHHHHHHHHHHHHCCCCCCCCCCEEECCH--------------HCCCCC----C Q ss_conf 76268541000123---------56777789999987411432012892875220--------------024543----2 Q gi|254780573|r 112 TRLACLAPTHQPRA---------TNHIPQMIYLIQNIILHGHAYEANNEIIFDTS--------------SIPNYG----S 164 (461) Q Consensus 112 ~~L~v~~p~~~pr~---------t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~--------------~~~~YG----~ 164 (461) T Consensus 93 ~w~nl~-~DEgP~~gG~~GPY~QS~R~eiY~kyae~Ll~sG~AYrC-----FCs~~rL~~lrk~A~k~~~~p~YD~kca~ 166 (524) T KOG1149 93 KWANLD-WDEGPGVGGPFGPYEQSERLEIYKKYAEKLLESGHAYRC-----FCSEERLDLLRKSALKKHEIPRYDRKCAN 166 (524) T ss_pred HHCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEE-----CCCHHHHHHHHHHHHCCCCCCCCCCHHCC T ss_conf 862999-655888689888524578999999999999865975674-----15888999998865314788740202133 Q ss_pred CCCCCHHHHHHHHHCCCCCCCCCCCCEEEEECCCC----------CCCEEECC--C-------CCCCCCCCCHHHHHHHH Q ss_conf 24675466664321022221012351266633776----------66314146--7-------76676433204777787 Q gi|254780573|r 165 FSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTP----------MEPGWESP--W-------GRGRPGWHIECSAMSSH 225 (461) Q Consensus 165 Ls~~~~~~~~~g~r~~~~~~K~~p~DFaLWK~~~~----------~e~~w~sp--w-------G~GRPGWHiECsam~~~ 225 (461) T Consensus 167 ls~~ei~~~la---------kg~p--f~iRFrl~~~~~~f~DLvyG~v~~~~d~~~gD~VvmKSDgfPTYHfAn------ 229 (524) T KOG1149 167 LSDAEIKQKLA---------KGTP--FTIRFRLPKESPPFTDLVYGKVNHNVDSNEGDPVVMKSDGFPTYHFAN------ 229 (524) T ss_pred CCHHHHHHHHH---------CCCC--EEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCCCCEEEEE------ T ss_conf 57999999974---------6998--069973687788702444202102555567981798148986212221------ Q ss_pred HCCCCEEEEEECCCCCCCCCH------HHHHHHHHHCCCCCCHHHEECCCE-EEEEECCCCCCCCCCCCHHHHHCCCCCC Q ss_conf 529841487413566668751------366888864087530121003432-5764202233233214089985025334 Q gi|254780573|r 226 YLGKVFDIHGGGLDLIFPHHE------NEIAQSCCADRIEKTANIWIHNGF-LNLEGRKMSKSNGNFITINELLETKKFG 298 (461) Q Consensus 226 ~lg~~~DIH~GG~DL~FPHHE------NEiAQs~a~~~~~~~a~yWlH~G~-l~i~geKMSKSlGN~iti~dlL~~~~~~ 298 (461) T Consensus 230 ----VVDDh~M~IsHViRGeEWlpST~KH~lLYkAfgW~pP--k-FaHlpLl~n~d~sKLSKRqg-D~~vs~~~e----- 296 (524) T KOG1149 230 ----VVDDHLMGISHVIRGEEWLPSTLKHILLYKAFGWQPP--K-FAHLPLLLNPDGSKLSKRQG-DASVSHYRE----- 296 (524) T ss_pred ----EECCHHCCHHHEEECCHHCCCCHHHHHHHHHHCCCCC--C-EEEEEEEECCCCCHHHHHCC-CCHHHHHHH----- T ss_conf ----2220001202113020105640889999998289998--5-13423466588540002037-523888987----- Q ss_pred CCCCCHHHHHHHHHCCCCCCC---CCCCHHHHH Q ss_conf 557779999999842566432---114503468 Q gi|254780573|r 299 GRSWPAPVIRLAMLMTHYREP---IDFTVQRLT 328 (461) Q Consensus 299 ~k~y~p~viR~~lLsshYRsp---LdfS~e~L~ 328 (461) T Consensus 297 -~G~LPeallN~ial~Gwg~~~~~~f~sl~eLi 328 (524) T KOG1149 297 -QGYLPEALLNYIALLGWGFRTENEFFSLEELI 328 (524) T ss_pred -CCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHH T ss_conf -48773999999998088864102354699999 |
|
| >cd00806 TrpRS_core Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0076 Score=40.68 Aligned_cols=199 Identities=18% Similarity=0.133 Sum_probs=93.7 Q ss_pred ECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 16788884441112799999999999997079984579960552338889999870898644884899999999999998 Q gi|254780573|r 31 CGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKD 110 (461) Q Consensus 31 CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~~~~f~~d 110 (461) T Consensus 7 ~~PT--G~~HlG~---~v~~~k~~~~~~-~g~~--~~i--~iaD~ha-~t~~----~~------~~~-~~~~~~~~~~~~ 64 (282) T cd00806 7 IQPS--GSLHLGH---YLGAIRNWVLQQ-EGYE--LFF--FIADLHA-LTVK----QS------DPE-ELRQNTRENAAD 64 (282) T ss_pred CCCC--CCCHHHH---HHHHHHHHHHHH-CCCC--EEE--EEECHHH-HHCC----CC------CHH-HHHHHHHHHHHH T ss_conf 7989--7147888---999999999997-8991--999--9804388-8679----99------999-999999999999 Q ss_pred HHHHCCCCCCHHH-HHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCC Q ss_conf 7762685410001-235677778999998741143201289287522002454322467546666432102222101235 Q gi|254780573|r 111 TTRLACLAPTHQP-RATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPA 189 (461) Q Consensus 111 ~~~L~v~~p~~~p-r~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~~~~YG~Ls~~~~~~~~~g~r~~~~~~K~~p~ 189 (461) T Consensus 65 ~lA~G~Dp~k~~i~~qS~-~~~~~el~~~-----------------l~~~~t~~~l~r~-----------~~~k~~~~~~ 115 (282) T cd00806 65 YLACGLDPEKSTIFFQSD-VPEHYELAWL-----------------LSCVVTFGELERM-----------TGFKDKSNKQ 115 (282) T ss_pred HHHCCCCHHHEEEEEECC-CHHHHHHHHH-----------------HHHHCCHHHHHHC-----------CHHHHHHHHC T ss_conf 999198888908998374-2789999999-----------------9843219999732-----------1023456522 Q ss_pred CEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCH--HHHHHHHHHC-C---CCCCHH Q ss_conf 126663377666314146776676433204777787529841487413566668751--3668888640-8---753012 Q gi|254780573|r 190 DFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHE--NEIAQSCCAD-R---IEKTAN 263 (461) Q Consensus 190 DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~FPHHE--NEiAQs~a~~-~---~~~~a~ 263 (461) T Consensus 116 ~~----~~~~g~~~YP--------------~lQaaDil~~~~d~vp~G~DQ~-~h~~laRdia~k~n~~~~~~~~~P~-- 174 (282) T cd00806 116 KL----SIPIGLLTYP--------------VLQAADILLYQADLVPVGEDQD-PHLELTRDIARRFNKLYGEIFPKPE-- 174 (282) T ss_pred CC----CCCCHHHHCH--------------HHHHHHHHHHCCCCCCCCHHHH-HHHHHHHHHHHHHHHHCCCCCCCCH-- T ss_conf 57----8762534053--------------9888784662565052220479-9999999999998655065346641-- Q ss_pred HEECCC---EEEE-EE-CCCCCCCCCC-CCHHHHHCCCCCCCCCCCHHHHHHHHHCC Q ss_conf 100343---2576-42-0223323321-40899850253345577799999998425 Q gi|254780573|r 264 IWIHNG---FLNL-EG-RKMSKSNGNF-ITINELLETKKFGGRSWPAPVIRLAMLMT 314 (461) Q Consensus 264 yWlH~G---~l~i-~g-eKMSKSlGN~-iti~dlL~~~~~~~k~y~p~viR~~lLss 314 (461) T Consensus 175 -~~~~~~~~i~~l~~g~~KMSKS~~ns~I~l~D------------~p~~I~kKI~ka 218 (282) T cd00806 175 -ALISKGARIPSLTGPSKKMSKSDPNTIIFLLD------------SPKTIKKKIMKA 218 (282) T ss_pred -HHCCCCCCCCCCCCCCCCCCCCCCCCCEEECC------------CHHHHHHHHEEE T ss_conf -10155551667889767555689997445417------------689999751262 |
TrpRS is a homodimer, which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding |
| >PRK12282 tryptophanyl-tRNA synthetase II; Reviewed | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.098 Score=32.76 Aligned_cols=209 Identities=16% Similarity=0.150 Sum_probs=99.6 Q ss_pred EEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 96167888844411127999999999999970799845799605523388899998708986448848999999999999 Q gi|254780573|r 29 YVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFV 108 (461) Q Consensus 29 Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~~~~f~ 108 (461) T Consensus 5 ilSGiqPTG~~HLGnylGai~~~--v-~lQ~-~~~--~~~~--IaDl--HalT~---~------~~~~~~-l~~~~~~~a 64 (333) T PRK12282 5 ILTGDRPTGKLHLGHYVGSLKNR--V-ALQN-EHK--QFVL--IADT--QALTD---N------AHNPEK-IRENILEVA 64 (333) T ss_pred EEECCCCCCCCHHHHHHHHHHHH--H-HHHC-CCC--CEEE--EECH--HHHHC---C------CCCHHH-HHHHHHHHH T ss_conf 88490878835488789999999--9-9971-688--0799--8447--88745---8------999999-999999999 Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCC Q ss_conf 98776268541000123567777899999874114320128928752200245432246754666643210222210123 Q gi|254780573|r 109 KDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNP 188 (461) Q Consensus 109 ~d~~~L~v~~p~~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~~~~YG~Ls~~~~~~~~~g~r~~~~~~K~~p 188 (461) T Consensus 65 a~~lA~GlDP~k~~if~QS~v~eh~eL~w~l~-----------------~~~~~~~l~r~~~~K~k~~-------~~--- 117 (333) T PRK12282 65 LDYLAVGIDPAKSTIFVQSQIPALAELTMYYM-----------------NLVTVARLERNPTVKTEIA-------QK--- 117 (333) T ss_pred HHHHHCCCCCCCEEEEECCCCHHHHHHHHHHH-----------------HCCCHHHHHHCCHHHHHHH-------CC--- T ss_conf 99997589856428997378668899999998-----------------3084889873435999986-------12--- Q ss_pred CCEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCHH--HHHHHHHH-CCCCCCH--H Q ss_conf 51266633776663141467766764332047777875298414874135666687513--66888864-0875301--2 Q gi|254780573|r 189 ADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHEN--EIAQSCCA-DRIEKTA--N 263 (461) Q Consensus 189 ~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~FPHHEN--EiAQs~a~-~~~~~~a--~ 263 (461) T Consensus 118 -~~~--~~i~~Gl~~YP--------------vLmAADILly~a~~VPVG~DQ~-qHlELtRdiA~rfN~~yg~~~f~~P~ 179 (333) T PRK12282 118 -GFG--RSIPAGFLTYP--------------VSQAADITAFKATLVPVGDDQL-PMIEQTNEIVRRFNHTYGTDVLVEPE 179 (333) T ss_pred -CCC--CCCCCCCCCCH--------------HHHHHHHHHCCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHCCCCCCCCC T ss_conf -888--88763110376--------------9860204513788076665259-99999999999999870986568862 Q ss_pred -HEECCCE-EEEEEC-CCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHCC Q ss_conf -1003432-576420-22332332140899850253345577799999998425 Q gi|254780573|r 264 -IWIHNGF-LNLEGR-KMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMT 314 (461) Q Consensus 264 -yWlH~G~-l~i~ge-KMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~lLss 314 (461) T Consensus 180 ~~~~~~~ri~~Ldg~~KMSKS~~n~I~L~D------------~~~~I~kKI~ka 221 (333) T PRK12282 180 ALLPEAGRLPGLDGKAKMSKSLGNAIYLSD------------SADTIKKKVMSM 221 (333) T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEECCC------------CHHHHHHHHHHC T ss_conf 304545667299985010599999621448------------999999998838 |
|
| >PRK12556 tryptophanyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=91.94 E-value=0.031 Score=36.29 Aligned_cols=211 Identities=20% Similarity=0.170 Sum_probs=97.7 Q ss_pred EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHH---HCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHH Q ss_conf 99616788884441112799999999999997---079984579960552338889999870898644884899999999 Q gi|254780573|r 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRY---YYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNT 104 (461) Q Consensus 28 ~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~---~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~~ 104 (461) T Consensus 5 ~i~SGiqPTG~lHLGNYlGai-----k~~v~l~~~~~~~--~~~~--IaDlHa--l--------T~--~~dp~~l~~-~~ 62 (328) T PRK12556 5 IMLTGIKPTGYPHLGNYIGAI-----KPALQMSKNNEGK--ALYF--IADYHA--L--------NA--VHDPEQFSS-YT 62 (328) T ss_pred EEEECCCCCCCCCHHHHHHHH-----HHHHHHHHCCCCC--EEEE--EECHHH--C--------CC--CCCHHHHHH-HH T ss_conf 688577989975088899999-----9999975479987--7999--851422--3--------58--899999999-99 Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHCCCCCCCCCCCHHHHHHHHHCCCCCC Q ss_conf 99999877626854100012356777789999987411432012892875220024543224675466664321022221 Q gi|254780573|r 105 QQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYH 184 (461) Q Consensus 105 ~~f~~d~~~L~v~~p~~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~~~~YG~Ls~~~~~~~~~g~r~~~~~~ 184 (461) T Consensus 63 ~~~~a~~LA~GlDP-~~~~f~QS~Vpeh~eL~wil-----------------~~~~~~g~L~Rm~q~K~k~~~~~~--~~ 122 (328) T PRK12556 63 KEVAATWLSLGLGE-DVIFYRQTEVPEILELAWIL-----------------ACLTPKGLMNRAHAYKAKVEQNKE--AG 122 (328) T ss_pred HHHHHHHHHCCCCC-CEEEEECCCCHHHHHHHHHH-----------------HCCCCHHHHHHCCCCCHHHHHHHH--CC T ss_conf 99999999758998-74999878973999999999-----------------776838888515323005565454--03 Q ss_pred CCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCH--HHHHHHHH-HCCCCCC Q ss_conf 01235126663377666314146776676433204777787529841487413566668751--36688886-4087530 Q gi|254780573|r 185 KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHE--NEIAQSCC-ADRIEKT 261 (461) Q Consensus 185 K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~FPHHE--NEiAQs~a-~~~~~~~ 261 (461) T Consensus 123 ~-~~-~~----~i~~GL~--------~YP------vLmAADILly~a~~VPVGeDQ~-QHlEltRdiA~rFN~~yg-~~f 180 (328) T PRK12556 123 L-EV-DA----GVNMGLY--------TYP------ILMAADILLFQATHVPVGKDQI-QHIEIARDIATYFNHTFG-TTF 180 (328) T ss_pred C-CC-CC----CCCCCCC--------CCC------HHHHCHHHHCCCCEECCCCCHH-HHHHHHHHHHHHHHHHCC-CCC T ss_conf 5-75-55----6555456--------650------7653311302664504681069-999999999999987557-556 Q ss_pred H--HHEE--CCCE-EEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHCC Q ss_conf 1--2100--3432-57642022332332140899850253345577799999998425 Q gi|254780573|r 262 A--NIWI--HNGF-LNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMT 314 (461) Q Consensus 262 a--~yWl--H~G~-l~i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~lLss 314 (461) T Consensus 181 ~~P~~~i~~~~~~i~gldgkKMSKS~~n~I~L~D------------~~d~I~kKI~ka 226 (328) T PRK12556 181 TLPEYVIQEEGAILPGLDGRKMSKSYGNVIPLFA------------EQEKLRKLIFKI 226 (328) T ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC------------CHHHHHHHHHHC T ss_conf 7864333765433108998765568788134768------------999999999745 |
|
| >PRK11893 methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-45 Score=343.54 Aligned_cols=328 Identities=21% Similarity=0.207 Sum_probs=229.8 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 67888844411127999999999999970799845799605523388899998708986448848999999999999987 Q gi|254780573|r 32 GPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDT 111 (461) Q Consensus 32 GpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~~~~f~~d~ 111 (461) T Consensus 9 ~Py~nG~lHlGHa~~~~~~Dv~~Ry~R~~G~~--v~~~~GtD~hg~~i~~~A~~~g~~------p~e~~~~~~~~~~~~~ 80 (512) T PRK11893 9 IYYPNGKPHIGHAYTTLAADVLARFKRLRGYD--VFFLTGTDEHGQKIERKAEEAGIS------PQELADRNSASFKRLW 80 (512) T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC--EEEECCCCCCHHHHHHHHHHCCCC------HHHHHHHHHHHHHHHH T ss_conf 99889973446358799999999999955997--074687177519999999985999------9999999999999999 Q ss_pred HHHCCCCCCHHHHHHH--HHHHHHHHHHHHHHCCCCCCCCCCEEECCH--HCCCCCCCCCCCHHH---HHHHHHCCCCCC Q ss_conf 7626854100012356--777789999987411432012892875220--024543224675466---664321022221 Q gi|254780573|r 112 TRLACLAPTHQPRATN--HIPQMIYLIQNIILHGHAYEANNEIIFDTS--SIPNYGSFSRRKIDE---QKMGTRVPEKYH 184 (461) Q Consensus 112 ~~L~v~~p~~~pr~t~--~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~--~~~~YG~Ls~~~~~~---~~~g~r~~~~~~ 184 (461) T Consensus 81 ~~l~i~~-D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~c~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~ 159 (512) T PRK11893 81 EALNISY-DDFIRTTDERHKEAVQEIFQRLLANGDIYLGKYSGWYCVRCEEFKTESEARLGEDGCPRCPIHGKPVEWVEE 159 (512) T ss_pred HHCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCEEEEC T ss_conf 9809988-878779987999999999999976797743244432268864445777723665788655557997768724 Q ss_pred C-----------------CCCCCEEEEECCC--------CCCCEEE----C-CCCCCCCC--CCCHH----------HHH Q ss_conf 0-----------------1235126663377--------6663141----4-67766764--33204----------777 Q gi|254780573|r 185 K-----------------KNPADFILWKRST--------PMEPGWE----S-PWGRGRPG--WHIEC----------SAM 222 (461) Q Consensus 185 K-----------------~~p~DFaLWK~~~--------~~e~~w~----s-pwG~GRPG--WHiEC----------sam 222 (461) T Consensus 160 ~~~flkl~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~l~d~~ISR~~~~WGi~vP~~~~~~~yvWfda~~~y~s~~ 239 (512) T PRK11893 160 ESYFFRLSKYQDKLLELYEANPDFIQPESRRNEVINFVKSGLKDLSISRTNFDWGIPVPGDPKHVIYVWFDALLNYLTAL 239 (512) T ss_pred CCCEECCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHH T ss_conf 76112050546779999724986518699999999998577876615256787899888888862011253135567764 Q ss_pred HHHHCC--------CCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCHHHEECCCEEEEEECCCCCCCCCCCCHHHHHCC Q ss_conf 787529--------841487413566668751366888864087530121003432576420223323321408998502 Q gi|254780573|r 223 SSHYLG--------KVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294 (461) Q Consensus 223 ~~~~lg--------~~~DIH~GG~DL~FPHHENEiAQs~a~~~~~~~a~yWlH~G~l~i~geKMSKSlGN~iti~dlL~~ 294 (461) T Consensus 240 ~~~~~~~~~~~~~~w~~~vh~~G~Dii~fH~~~~~a~l~~~~~-~~p~~~~~h-g~l~~~G~KmSKS~Gn~I~~~d~l-- 315 (512) T PRK11893 240 GYDEPDLEELFRKYWPADVHLIGKDILRFHAVYWPAFLMAAGL-PLPKRVFAH-GFLTNDGQKMSKSLGNVIDPFDLV-- 315 (512) T ss_pred CCCCCCCHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHCCC-CCCCCCCCC-EEEEECCCEECCCCCCCCCHHHHH-- T ss_conf 5887656478984487504323665120138889999986699-988634311-148875715013478758999999-- Q ss_pred CCCCCCCCCHHHHHHHHHCC-CCCCCCCCCHHHHHHHHH--HHHHCCCCCCC---------------C---CCCCH---- Q ss_conf 53345577799999998425-664321145034687776--43210000135---------------1---00596---- Q gi|254780573|r 295 KKFGGRSWPAPVIRLAMLMT-HYREPIDFTVQRLTEAEI--LLSKWPQTSTS---------------K---GIIDP---- 349 (461) Q Consensus 295 ~~~~~k~y~p~viR~~lLss-hYRspLdfS~e~L~~A~~--~l~kl~~~~~~---------------~---~~~~~---- 349 (461) T Consensus 316 -----~~yg~D~lR~~L~~~~p~~~D~~Fs~~~f~~~~N~~l~~~~gNl~~R~~~~~~~~~~~~~p~~~~~~~~d~~~~~ 390 (512) T PRK11893 316 -----DKFGVDAVRYFLLREIPFGQDGDFSEEAFINRINADLANDLGNLLSRTLSMIAKYFDGKVPEPGEFSEADAALLE 390 (512) T ss_pred -----HHCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH T ss_conf -----985950402877632887778787899999897589999999999999999987517878886658876899999 Q ss_pred -------HHHHHCCCHHHHHHHHHHHHHHHHHHCCC Q ss_conf -------77630211012799999999999975130 Q gi|254780573|r 350 -------AVLSALYNDLNTVSAIQALHKLARESTKN 378 (461) Q Consensus 350 -------~f~~AL~DDLNTp~ALa~L~~lvk~~n~~ 378 (461) T Consensus 391 ~~~~~~~~v~~~~-e~~~~~~a~~~i~~~~~~~N~y 425 (512) T PRK11893 391 KADAALEQVREAM-DNFAFHKALEAILELAAEANKY 425 (512) T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999-7125999999999999999999 |
|
| >PRK12267 methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=288.72 Aligned_cols=330 Identities=21% Similarity=0.244 Sum_probs=241.7 Q ss_pred EEEEC--CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHH Q ss_conf 99616--7888844411127999999999999970799845799605523388899998708986448848999999999 Q gi|254780573|r 28 MYVCG--PTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQ 105 (461) Q Consensus 28 ~Y~CG--pTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~~~ 105 (461) T Consensus 6 ~~iTt~ipY~Ng~~HiGHa~~~i~aDv~aRy~R~~G~~--v~f~~GtDehG~kI~~~A~~~g~t------P~e~~d~~~~ 77 (644) T PRK12267 6 FYITTPIYYPSGKLHIGHAYTTIAADVLARYKRLQGYD--VFFLTGTDEHGQKIQQKAEEAGIT------PQEYVDEISA 77 (644) T ss_pred EEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC--EEEECCCCCCCHHHHHHHHHCCCC------HHHHHHHHHH T ss_conf 89968998889985545348789999999999846997--598487687529999999985999------9999999999 Q ss_pred HHHHHHHHHCCCCCCHHHHHHH--HHHHHHHHHHHHHHCCCCCCCCCCEEECCHHCC--------CCCC--CCCCCHHHH Q ss_conf 9999877626854100012356--777789999987411432012892875220024--------5432--246754666 Q gi|254780573|r 106 QFVKDTTRLACLAPTHQPRATN--HIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP--------NYGS--FSRRKIDEQ 173 (461) Q Consensus 106 ~f~~d~~~L~v~~p~~~pr~t~--~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~~~--------~YG~--Ls~~~~~~~ 173 (461) T Consensus 78 ~~~~~~~~l~Is~-D~f~rTt~~~h~~~vq~if~~L~~kG~Iy~~~~~~~Yc~~ce~f~~~~~l~d~g~cp~cg~~~e~~ 156 (644) T PRK12267 78 GFKDLWDKLDISY-DKFIRTTDERHKKVVQKVFEKLYDQGDIYLGEYEGWYCVSCETFFTESQLVDGGKCPDSGHEVELV 156 (644) T ss_pred HHHHHHHHCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCEEE T ss_conf 9999999869967-878548988999999999999998899786655123258754333624404578687789976464 Q ss_pred HHHH---HCC------CCCCCCCCCCEEEEECCC---------CCC----CEEEC-CCCCCCC----------------- Q ss_conf 6432---102------222101235126663377---------666----31414-6776676----------------- Q gi|254780573|r 174 KMGT---RVP------EKYHKKNPADFILWKRST---------PME----PGWES-PWGRGRP----------------- 213 (461) Q Consensus 174 ~~g~---r~~------~~~~K~~p~DFaLWK~~~---------~~e----~~w~s-pwG~GRP----------------- 213 (461) T Consensus 157 ~ee~yffkL~~~~~~L~~~~~~~-p~~i~p~~~~ne~~~~~l~~gL~D~~ISR~~~~WGipvP~d~~~v~YVWfDA~i~Y 235 (644) T PRK12267 157 KEESYFFRMSKYADRLLEFYEEN-PDFIQPESRKNEMLNNFIKPGLEDLAVSRTSFDWGIPVPSDPKHVVYVWIDALLNY 235 (644) T ss_pred CCCCEEEEHHHHHHHHHHHHHCC-CCEECCHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCEEEEEEECCCCCH T ss_conf 05651443466789999999609-97467625887999999857785543024778888857898760799842243003 Q ss_pred ----CCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCHHHEECCCEEEEEECCCCCCCCCCCCHH Q ss_conf ----4332047777875298414874135666687513668888640875301210034325764202233233214089 Q gi|254780573|r 214 ----GWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITIN 289 (461) Q Consensus 214 ----GWHiECsam~~~~lg~~~DIH~GG~DL~FPHHENEiAQs~a~~~~~~~a~yWlH~G~l~i~geKMSKSlGN~iti~ 289 (461) T Consensus 236 isa~g~~~~~~~~~~~~Wp--~~~h~iGkDii~FH~i~wpamL~~~~-~~~p~~v~~h-g~~~~~g~KmSKS~Gn~i~~~ 311 (644) T PRK12267 236 ITALGYGSDDDELFMKFWP--ADVHLVGKDILRFHAIYWPIMLMALD-LPLPKHLFAH-GWWLMKDGKMSKSKGNVVDPE 311 (644) T ss_pred HHHHCCCCCCCHHHHHHCC--HHHCCCCCCHHHHHHHHHHHHHHHCC-CCCCCEEECC-CEEECCCCEECCCCCCEECHH T ss_conf 4341386212266776373--13302685532366889999999769-9986445104-418717860055368422379 Q ss_pred HHHCCCCCCCCCCCHHHHHHHHHCC-CCCCCCCCCHHHHHHHHH---------HHHHCCCCC--------CCC---CCCC Q ss_conf 9850253345577799999998425-664321145034687776---------432100001--------351---0059 Q gi|254780573|r 290 ELLETKKFGGRSWPAPVIRLAMLMT-HYREPIDFTVQRLTEAEI---------LLSKWPQTS--------TSK---GIID 348 (461) Q Consensus 290 dlL~~~~~~~k~y~p~viR~~lLss-hYRspLdfS~e~L~~A~~---------~l~kl~~~~--------~~~---~~~~ 348 (461) T Consensus 312 ~~~-------~~~g~D~lRyyl~~~~~~~~D~dfs~~~f~~r~NsdL~n~lGNl~~R~~~~~~k~~~g~vp~~~~~~~~d 384 (644) T PRK12267 312 ELV-------DRYGLDALRYYLLREVPFGSDGDFSPEAFVERINSDLANDLGNLLNRTVAMINKYFDGEIPAYKGVTEFD 384 (644) T ss_pred HHH-------HHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH T ss_conf 998-------7559404364644448878777789999999988998877778999999998875188678887787456 Q ss_pred HHHH----------HHCCCHHHHHHHHHHHHHHHHHHCCC Q ss_conf 6776----------30211012799999999999975130 Q gi|254780573|r 349 PAVL----------SALYNDLNTVSAIQALHKLARESTKN 378 (461) Q Consensus 349 ~~f~----------~AL~DDLNTp~ALa~L~~lvk~~n~~ 378 (461) T Consensus 385 ~~l~~~~~~~~~~~~~~~~~~~~~~Al~~i~~l~~~~N~Y 424 (644) T PRK12267 385 EELLALAKETLKKYEEAMEALQFSRALEELWKLISRANKY 424 (644) T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999997126999999999999999998 |
|
| >PRK00133 metG methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-32 Score=248.95 Aligned_cols=332 Identities=22% Similarity=0.284 Sum_probs=219.8 Q ss_pred EEEEECCCCC--CCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC-CHHHHHHHHHCCCCCCCCCCHHHHHHHH Q ss_conf 9996167888--844411127999999999999970799845799605523-3888999987089864488489999999 Q gi|254780573|r 27 RMYVCGPTVY--DFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDI-DDKIIERARQEHPSIPINDAISIITSKN 103 (461) Q Consensus 27 ~~Y~CGpTvy--~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDi-dDkii~~a~~~~~~~~~~~~~~~~a~~~ 103 (461) T Consensus 3 ~~~iTt~ipY~Ng~~HiGH~~~~i~aDv~aRy~Rl~G~~--v~f~~G-tDeHG~~i~~~A~~~g~t------p~e~~d~~ 73 (666) T PRK00133 3 KILVTCALPYANGPIHLGHLLEYIQADIWVRYQRMRGHE--VLFVCA-DDAHGTPIMLKAEKEGIT------PEELIARY 73 (666) T ss_pred CEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC--EEEECC-CCCCCHHHHHHHHHCCCC------HHHHHHHH T ss_conf 779817987888984312467699999999999836995--498474-278848999999985999------99999999 Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHH--HHHHHHHHHHHHHHCCCCCCCCCCEEECCHH--C----------------CCCC Q ss_conf 999999877626854100012356--7777899999874114320128928752200--2----------------4543 Q gi|254780573|r 104 TQQFVKDTTRLACLAPTHQPRATN--HIPQMIYLIQNIILHGHAYEANNEIIFDTSS--I----------------PNYG 163 (461) Q Consensus 104 ~~~f~~d~~~L~v~~p~~~pr~t~--~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~--~----------------~~YG 163 (461) T Consensus 74 ~~~~~~~~~~l~Is~-D~f~rTt~~~h~~~vq~~f~~l~~~G~iy~~~~~~~Yc~~~e~fl~Dr~V~GtCP~C~~~~~~G 152 (666) T PRK00133 74 HAEHKRDFAGFGISF-DNYGSTHSEENRELAQEIYLKLKENGYIYERTIEQLYDPEKGMFLPDRFVKGTCPKCGAEDQYG 152 (666) T ss_pred HHHHHHHHHHCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCEEEEECCCCCCHHHCC T ss_conf 999999999839957-8785789889999999999999978998974035556687565525423420257778712048 Q ss_pred CC---CCCCH--HHHH------HHHHCCCCC------------------CCCCC-----CCEEE-EECC--CCCCCEEEC Q ss_conf 22---46754--6666------432102222------------------10123-----51266-6337--766631414 Q gi|254780573|r 164 SF---SRRKI--DEQK------MGTRVPEKY------------------HKKNP-----ADFIL-WKRS--TPMEPGWES 206 (461) Q Consensus 164 ~L---s~~~~--~~~~------~g~r~~~~~------------------~K~~p-----~DFaL-WK~~--~~~e~~w~s 206 (461) T Consensus 153 D~Ce~cG~~~~p~eL~~p~~~~~g~~~e~~~~e~~ff~Ls~~~~~L~~~~~~~~~~~~~~n~~~~~l~~gL~D~~ISR~~ 232 (666) T PRK00133 153 DNCEVCGATYSPTELINPKSAISGATPVLKESEHFFFKLPDFEEFLKEWTRSGALQPNVANKMKEWLEEGLQDWDISRDA 232 (666) T ss_pred CCCCCCCCCCCCHHHCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEEEC T ss_conf 74224565167344238643457985166035333313877778998751048898789999999985788775304027 Q ss_pred CC-CCCCCC--------CC------CHHHHHHHHHCCCC------EE-----EEEECCCCCCCCCHH-HHHHHHHHCCCC Q ss_conf 67-766764--------33------20477778752984------14-----874135666687513-668888640875 Q gi|254780573|r 207 PW-GRGRPG--------WH------IECSAMSSHYLGKV------FD-----IHGGGLDLIFPHHEN-EIAQSCCADRIE 259 (461) Q Consensus 207 pw-G~GRPG--------WH------iECsam~~~~lg~~------~D-----IH~GG~DL~FPHHEN-EiAQs~a~~~~~ 259 (461) T Consensus 233 ~W~GipvP~~~~kv~YVW~DA~igYis~t~~~~~~~~~~~~~~W~~d~~~~~vhfiGKDii~-FH~i~wPa~L~~~g-~~ 310 (666) T PRK00133 233 PYFGFEIPGAPGKVFYVWLDAPIGYISSTKNLCDKRGLDWDEYWKKDSDTELYHFIGKDIIY-FHTLFWPAMLEGAG-YR 310 (666) T ss_pred CCCCEECCCCCCEEEEEEECCCHHHHHHHHHHCCCCCCCHHHCCCCCCCCCEEEECCCCHHH-HHHHHHHHHHHHCC-CC T ss_conf 84445888987648999615645377764433143565587638899876336753443114-64767999998467-78 Q ss_pred CCHHHEECCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHCC-CCC-CCCCCCHHHHHHHHH----- Q ss_conf 3012100343257642022332332140899850253345577799999998425-664-321145034687776----- Q gi|254780573|r 260 KTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMT-HYR-EPIDFTVQRLTEAEI----- 332 (461) Q Consensus 260 ~~a~yWlH~G~l~i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~lLss-hYR-spLdfS~e~L~~A~~----- 332 (461) T Consensus 311 lP~~v~~h-g~l~~~G~KmSKS~Gnvv~p~~~l-------~~yg~D~lRY~l~~~~p~~~~D~dfs~~~~~~r~NsdLan 382 (666) T PRK00133 311 LPTNVFAH-GFLTVEGAKMSKSRGTFIWARTYL-------DHLDPDYLRYYLAAKLPSRIDDIDFNWEDFQQRVNSDLVG 382 (666) T ss_pred CCCCCCCC-CCEEECCEEEECCCCEEEEHHHHH-------HHCCCCCEEHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH T ss_conf 88612114-648778806001267176179999-------8669645302033107898767786999999998688887 Q ss_pred ----HHHHCCCCC-------CCCCCCCHHHH----------HHCCCHHHHHHHHHHHHHHHHHHCCC Q ss_conf ----432100001-------35100596776----------30211012799999999999975130 Q gi|254780573|r 333 ----LLSKWPQTS-------TSKGIIDPAVL----------SALYNDLNTVSAIQALHKLARESTKN 378 (461) Q Consensus 333 ----~l~kl~~~~-------~~~~~~~~~f~----------~AL~DDLNTp~ALa~L~~lvk~~n~~ 378 (461) T Consensus 383 ~lGNl~~R~~~~~~k~~~g~vp~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~Al~~i~~l~~~~NkY 449 (666) T PRK00133 383 KLVNFASRAAGFINKRFDGKLPDELADPELLEEFRAAAESIAEAYEAREFRKALREIMALADRANKY 449 (666) T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH T ss_conf 6668999999999986599789974589999999999999999998106999999999999999888 |
|
| >PRK12268 methionyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=232.60 Aligned_cols=336 Identities=19% Similarity=0.173 Sum_probs=212.4 Q ss_pred EEEEEC--CCCCCCCCCCCCH-HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHH Q ss_conf 999616--7888844411127-9999999999999707998457996055233888999987089864488489999999 Q gi|254780573|r 27 RMYVCG--PTVYDFAHIGNAR-PMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN 103 (461) Q Consensus 27 ~~Y~CG--pTvy~~~HiG~~r-~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~ 103 (461) T Consensus 4 k~~iTt~~Py~nG~lHiGH~~~~~l~aDi~aRy~R~~G~~--v~~~~GtD~hG~~i~~~A~k~g~~------p~e~~~~~ 75 (558) T PRK12268 4 RILITSAWPYANGPLHLGHLAGSYLPADVYARYQRLKGNE--VLFVSGSDEHGTPIELEAEKEGVS------PQELADKY 75 (558) T ss_pred CEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC--EEEECCCCCCHHHHHHHHHHCCCC------HHHHHHHH T ss_conf 1898479988889855231114198999999999837998--797584064749999999985999------99999999 Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHH--HHHHHHHHHHHHHHCCCCCCCCCCEEECCHH--C----------------CCCC Q ss_conf 999999877626854100012356--7777899999874114320128928752200--2----------------4543 Q gi|254780573|r 104 TQQFVKDTTRLACLAPTHQPRATN--HIPQMIYLIQNIILHGHAYEANNEIIFDTSS--I----------------PNYG 163 (461) Q Consensus 104 ~~~f~~d~~~L~v~~p~~~pr~t~--~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~--~----------------~~YG 163 (461) T Consensus 76 ~~~~~~~~~~lgis-~D~f~rT~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~~fl~d~~v~G~cP~c~~~~~~G 154 (558) T PRK12268 76 HEEHKEDFEKLGIS-YDNYTRTTSPEHHELVQEFFLKLYENGYIEKKTIEQAYCPSDGRFLPDRYVEGTCPYCGYEKARG 154 (558) T ss_pred HHHHHHHHHHCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCCCC T ss_conf 99999999981983-77686689889999999999999988993301353436841123131233154067768743567 Q ss_pred CC---CCC--CHHHHH------HHHHCCCCCCCC------CCCCEEE--------EECC---------CCC----CCEEE Q ss_conf 22---467--546666------432102222101------2351266--------6337---------766----63141 Q gi|254780573|r 164 SF---SRR--KIDEQK------MGTRVPEKYHKK------NPADFIL--------WKRS---------TPM----EPGWE 205 (461) Q Consensus 164 ~L---s~~--~~~~~~------~g~r~~~~~~K~------~p~DFaL--------WK~~---------~~~----e~~w~ 205 (461) T Consensus 155 d~ce~cg~~~~~~dli~p~~~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~p~~~~~~~~~~l~~~l~D~~ISR~ 234 (558) T PRK12268 155 DQCDNCGALLDPTDLINPRSKISGSTPEFRETEHFFLDLPAFQEALRKWIESGTDWPPNVLNFTLNWLKEGLKPRAITRD 234 (558) T ss_pred CHHHHCCCCCCHHHHCCCCCCCCCCCCEEEECCCEEECCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCC T ss_conf 32532476478577248856778994447734530214187789999998538877889999999998633756545553 Q ss_pred CCCCCCCCCC----------------CCHHHHHHHHHCCCC------------EEEEEECCCCCCCCCHHHHHHHHHHCC Q ss_conf 4677667643----------------320477778752984------------148741356666875136688886408 Q gi|254780573|r 206 SPWGRGRPGW----------------HIECSAMSSHYLGKV------------FDIHGGGLDLIFPHHENEIAQSCCADR 257 (461) Q Consensus 206 spwG~GRPGW----------------HiECsam~~~~lg~~------------~DIH~GG~DL~FPHHENEiAQs~a~~~ 257 (461) T Consensus 235 ~~WGipiP~~~~~~~~iyVW~Da~~~yis~~~~~~~~~~~~~~~~~~W~~~~~~~~~f~GkDii~FH~v~wpa~l~a~~~ 314 (558) T PRK12268 235 LPWGIPIPFEGAEGKVFYVWFDAPIGYISATKEWAKRKGDPEAWKEFWLDSDTKYYYFIGKDNIPFHSVIWPAMLLGSGE 314 (558) T ss_pred CCCCEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC T ss_conf 87865788555689679886578722034336545416985679872789984277643666543478799999973379 Q ss_pred CCCCHHHEECCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHC-CCCCCCCCCCHHHHHHHHH--HH Q ss_conf 75301210034325764202233233214089985025334557779999999842-5664321145034687776--43 Q gi|254780573|r 258 IEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLM-THYREPIDFTVQRLTEAEI--LL 334 (461) Q Consensus 258 ~~~~a~yWlH~G~l~i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~lLs-shYRspLdfS~e~L~~A~~--~l 334 (461) T Consensus 315 ~~~lP~~i~~~g~~~~~G~KmSKS~Gnvi~p~~~i-------~~yg~D~lRy~L~~~~~~~~D~~fs~~~~~~~~N~dL~ 387 (558) T PRK12268 315 PYKLPTAIVSSEYLTYEGQKFSKSRGWGIWVDDAL-------ERLPPDYLRYYLAANAPENSDTDFTWEEFIRRVNSELA 387 (558) T ss_pred CCCCCCEEEEEEEEEECCCCCCCCCCCCCCHHHHH-------HHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH T ss_conf 87788778775568746841145578877989999-------87490777899885488888888799999999999999 Q ss_pred HHCCCC-------CC--------C---CCCCCHHHH----------HHCCCHHHHHHHHHHHHHHHHHHCCC Q ss_conf 210000-------13--------5---100596776----------30211012799999999999975130 Q gi|254780573|r 335 SKWPQT-------ST--------S---KGIIDPAVL----------SALYNDLNTVSAIQALHKLARESTKN 378 (461) Q Consensus 335 ~kl~~~-------~~--------~---~~~~~~~f~----------~AL~DDLNTp~ALa~L~~lvk~~n~~ 378 (461) T Consensus 388 ~~~gNl~~R~~~~~~k~~~g~~p~~~~~~~~d~~l~~~~~~~~~~v~~~~e~~~~~~Al~~i~~~~~~~N~y 459 (558) T PRK12268 388 DKYGNLVNRVLSFIEKNFGGEVPEPGELGEEDEELLEKFQELFKEVGEHYEAIEFKKALEEIMELARLANKY 459 (558) T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999865897898767985659999999999999999997517999999999999999999 |
|
| >COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-23 Score=186.20 Aligned_cols=332 Identities=24% Similarity=0.261 Sum_probs=213.3 Q ss_pred EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 99616788884441112799999999999997079984579960552338889999870898644884899999999999 Q gi|254780573|r 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQF 107 (461) Q Consensus 28 ~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~~~~f 107 (461) T Consensus 9 VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~--v~fvtGtDeHGt~I~~~A~~~g~t------P~el~d~~~~~~ 80 (558) T COG0143 9 VTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYE--VFFLTGTDEHGTKIELKAEKEGIT------PQELVDKNHEEF 80 (558) T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCE--EEEEECCCCCCCHHHHHHHHCCCC------HHHHHHHHHHHH T ss_conf 955898899986413678887899999999826975--899951478777889999985999------899999999999 Q ss_pred HHHHHHHCCCCCCHHHHHHH--HHHHHHHHHHHHHHCCCCCCCCCCEEECCHHCC----CC--------C-C-------- Q ss_conf 99877626854100012356--777789999987411432012892875220024----54--------3-2-------- Q gi|254780573|r 108 VKDTTRLACLAPTHQPRATN--HIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP----NY--------G-S-------- 164 (461) Q Consensus 108 ~~d~~~L~v~~p~~~pr~t~--~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~~~----~Y--------G-~-------- 164 (461) T Consensus 81 ~~~~~~l~Isf-D~F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~g~cp~cg~~~a~GD~Ce 159 (558) T COG0143 81 KELFKALNISF-DNFIRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLPDRYVEGTCPKCGGEDARGDQCE 159 (558) T ss_pred HHHHHHHCCCC-CEECCCCCHHHHHHHHHHHHHHHHCCCEECCCEEEEECCCCCCCCCCHHEECCCCCCCCCCCCCCHHH T ss_conf 99999809854-30016897779999999999999789873144356473543564562102055898675345764343 Q ss_pred -----CCCCC---HHHHHHHHHCCCC------------------CCCCCCCCEEEEEC--------CCCCC----CEE-E Q ss_conf -----24675---4666643210222------------------21012351266633--------77666----314-1 Q gi|254780573|r 165 -----FSRRK---IDEQKMGTRVPEK------------------YHKKNPADFILWKR--------STPME----PGW-E 205 (461) Q Consensus 165 -----Ls~~~---~~~~~~g~r~~~~------------------~~K~~p~DFaLWK~--------~~~~e----~~w-~ 205 (461) T Consensus 160 ~Cg~~~~P~~l~~p~~~i~g~~p~~r~~~hyFf~L~~~~~~L~~~~~~~~-~~~~p~~~~ne~~~~i~~GL~d~~IsR~~ 238 (558) T COG0143 160 NCGRTLDPTELINPVCVISGATPEVREEEHYFFRLSKFQDKLLEWYESNP-DFIWPANRRNEVLNFLKEGLKDLSITRTD 238 (558) T ss_pred HCCCCCCCHHCCCCEEEEECCCCCCCCCEEEEEEHHHHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHCCCCCCCEECCC T ss_conf 22675792121798168647976433540599887986999999997396-54588689999999997668664314589 Q ss_pred CCCCC---CCCC-----CCCH-HHHH-HHHHC---CCC--------EE----EEEECCCCCCCCCHHHHHHHHHHCCCCC Q ss_conf 46776---6764-----3320-4777-78752---984--------14----8741356666875136688886408753 Q gi|254780573|r 206 SPWGR---GRPG-----WHIE-CSAM-SSHYL---GKV--------FD----IHGGGLDLIFPHHENEIAQSCCADRIEK 260 (461) Q Consensus 206 spwG~---GRPG-----WHiE-Csam-~~~~l---g~~--------~D----IH~GG~DL~FPHHENEiAQs~a~~~~~~ 260 (461) T Consensus 239 ~~WGipvP~~p~kv~YVWfDAligYisa~~~~~~~~~~~~~~~~W~~~~~e~vhfIGKDii~FHav~wPamL~~~~~-~l 317 (558) T COG0143 239 LDWGIPVPGDPGKVIYVWFDALIGYISALGELAEIGDDEDFKKFWPADDTELVHFIGKDIIRFHAVYWPAMLMAAGL-PL 317 (558) T ss_pred CCCCCCCCCCCCCEEEEEECCHHHHHHHHCCHHCCCCHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCC-CC T ss_conf 88772579999877999634488999995412105876789863778884599996245674324578999973899-98 Q ss_pred CHHHEECCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHC-CCCCCCCCCCHHHHHHHHHH------ Q ss_conf 01210034325764202233233214089985025334557779999999842-56643211450346877764------ Q gi|254780573|r 261 TANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLM-THYREPIDFTVQRLTEAEIL------ 333 (461) Q Consensus 261 ~a~yWlH~G~l~i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~lLs-shYRspLdfS~e~L~~A~~~------ 333 (461) T Consensus 318 P~~i~ah-g~l~~~G~KmSKSrG~~V~~~~~~~-------~~~~D~lRYyL~~~~p~~~D~dFs~~~f~~rvN~dL~n~l 389 (558) T COG0143 318 PTRIFAH-GFLTLEGQKMSKSRGNVVDPDELLE-------QYGVDALRYYLARELPEGSDGDFSWEDFVERVNADLANKL 389 (558) T ss_pred CCEEEEE-EEEEECCCCCCCCCCCEEEHHHHHH-------HCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 8779840-1399779412442881871799998-------7482385798887377888888899999999989988788 Q ss_pred ---HHHCCCC--------CCCCC----CCCHHHH----------HHCCCHHHHHHHHHHHHHHHHHHCCC Q ss_conf ---3210000--------13510----0596776----------30211012799999999999975130 Q gi|254780573|r 334 ---LSKWPQT--------STSKG----IIDPAVL----------SALYNDLNTVSAIQALHKLARESTKN 378 (461) Q Consensus 334 ---l~kl~~~--------~~~~~----~~~~~f~----------~AL~DDLNTp~ALa~L~~lvk~~n~~ 378 (461) T Consensus 390 gNl~~R~l~fi~k~~~g~vp~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~~~~~~Al~~i~~l~~~~N~Y 459 (558) T COG0143 390 GNLANRTLGFINKYFDGVVPAAGAPDLEEDEELLALAREALEAVAEAMEKYEFRKALEEIMALASRANKY 459 (558) T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 8999999999975259968865455534569999999999999999998625999999999999999887 |
|
| >TIGR00398 metG methionyl-tRNA synthetase; InterPro: IPR002304 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.9e-21 Score=171.39 Aligned_cols=325 Identities=24% Similarity=0.231 Sum_probs=204.7 Q ss_pred CCCCCCCCCCH-HHHHHHHHHHHHHHHCCCCCEEEEECCCCC-CHHHHHHHHHCCCCCCCCCC-HHHHHHHHHHHHHHHH Q ss_conf 88844411127-999999999999970799845799605523-38889999870898644884-8999999999999987 Q gi|254780573|r 35 VYDFAHIGNAR-PMIVFDVLYRLLRYYYGEKCVTYVRNITDI-DDKIIERARQEHPSIPINDA-ISIITSKNTQQFVKDT 111 (461) Q Consensus 35 vy~~~HiG~~r-~~v~~D~l~R~L~~~~~~~~V~~v~niTDi-dDkii~~a~~~~~~~~~~~~-~~~~a~~~~~~f~~d~ 111 (461) T Consensus 10 ~Ng~pHlGH~~st~~~AD~~~RY~~~~G~~--v~f~cG-TDEHG~kI~~~A~~~g------~tqP~~~vd~~~~~f~~~~ 80 (573) T TIGR00398 10 ANGKPHLGHAYSTTILADVYARYKRLRGYE--VLFVCG-TDEHGTKIELKAEQEG------LTQPKELVDKYHEEFKKLW 80 (573) T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCE--EEEEEC-CCCCCCHHHHHHHHCC------CCCHHHHHHHHHHHHHHHH T ss_conf 787112103667778999999998528974--789851-3446878888698708------9964899999999999999 Q ss_pred HHHCCCCCCHHHHHHH--HHHHHHHHHHHHHHCCCCCCCCCCEEECCHHCC---C------C--------CCCCC----- Q ss_conf 7626854100012356--777789999987411432012892875220024---5------4--------32246----- Q gi|254780573|r 112 TRLACLAPTHQPRATN--HIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP---N------Y--------GSFSR----- 167 (461) Q Consensus 112 ~~L~v~~p~~~pr~t~--~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~~~---~------Y--------G~Ls~----- 167 (461) T Consensus 81 ~~lnI~f-D~F~RTTd~~H~~~v~~~f~~L~~nGyIY~~~~~g~YC~~c~~Fl~dr~~~~~yv~g~CP~c~~~~~~gd~c 159 (573) T TIGR00398 81 KWLNISF-DRFIRTTDEEHKEIVQKIFQKLLENGYIYEKEIKGLYCPECESFLPDRKLVDDYVEGTCPKCGSEDARGDHC 159 (573) T ss_pred HHHCCCC-CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCC T ss_conf 8728456-765467688889999999999875377411003532347566536223200133467488688777778775 Q ss_pred ------CCHHHHHH------HHHCCCCCCC-----------------CCCCCEEEEEC----------CCCCC----CEE Q ss_conf ------75466664------3210222210-----------------12351266633----------77666----314 Q gi|254780573|r 168 ------RKIDEQKM------GTRVPEKYHK-----------------KNPADFILWKR----------STPME----PGW 204 (461) Q Consensus 168 ------~~~~~~~~------g~r~~~~~~K-----------------~~p~DFaLWK~----------~~~~e----~~w 204 (461) T Consensus 160 ~~Cg~~leP~~Li~P~c~~~~~~~~~~~~~hyFf~L~~~~~~l~~~~~~~~~~~~~~~~~~n~~~~~~~~~GL~D~~ItR 239 (573) T TIGR00398 160 EVCGRHLEPFELINPRCVICKNKPELRDSEHYFFRLSAFEKELEEWIKKNPESKSPASNVKNVAKQNWIKGGLKDLAITR 239 (573) T ss_pred CCCCCCCCCCHHCCCCEEEECCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEC T ss_conf 54655368500118702554880025135452235368889999986148842421899999988998506874301103 Q ss_pred ECC---CCCCC-----CC-----CC-CHHHHHH-HHHCCC------------CEE------EEEECCCCCCCCCHH-HHH Q ss_conf 146---77667-----64-----33-2047777-875298------------414------874135666687513-668 Q gi|254780573|r 205 ESP---WGRGR-----PG-----WH-IECSAMS-SHYLGK------------VFD------IHGGGLDLIFPHHEN-EIA 250 (461) Q Consensus 205 ~sp---wG~GR-----PG-----WH-iECsam~-~~~lg~------------~~D------IH~GG~DL~FPHHEN-EiA 250 (461) T Consensus 240 ~~~~lkWG~pvP~~~~p~~~~YVW~DAl~gYiss~~~~~~~~~~~~~~~~~W~~~~~~~~~~HfIGKDI~~-FH~iyWPa 318 (573) T TIGR00398 240 DLVDLKWGIPVPNDGAPNKVVYVWFDALIGYISSLKALGIEKGLTEDWKKWWNNNSEDAELIHFIGKDIVR-FHTIYWPA 318 (573) T ss_pred CCCCCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEEECCCCCC-HHHHHHHH T ss_conf 64412115317898987967998720345699997521335687578998626888650278884241202-03334458 Q ss_pred HHHHHCC--CCCCHHHEECCCEEEEEECCCCCCCCCCCCHHH-HHCCCCCCCCCCCHHHHHHHHH-CCCCCCCCCCCHHH Q ss_conf 8886408--753012100343257642022332332140899-8502533455777999999984-25664321145034 Q gi|254780573|r 251 QSCCADR--IEKTANIWIHNGFLNLEGRKMSKSNGNFITINE-LLETKKFGGRSWPAPVIRLAML-MTHYREPIDFTVQR 326 (461) Q Consensus 251 Qs~a~~~--~~~~a~yWlH~G~l~i~geKMSKSlGN~iti~d-lL~~~~~~~k~y~p~viR~~lL-sshYRspLdfS~e~ 326 (461) T Consensus 319 ~L~-~~~eN~~lP~q~~~h-Gyl~~eG~KMSKS~G~vv~~~~~~~~------~~~g~D~lRYYl~~~~~~~~D~~F~~~~ 390 (573) T TIGR00398 319 MLM-GLGENLPLPTQVFAH-GYLTVEGQKMSKSLGNVVDPEDDLLA------RGYGADILRYYLLKEVPLGKDGDFSWED 390 (573) T ss_pred HHH-HCCCHHHHHHHHEEE-EEEEECCEEECCCCCCEECHHHHHHH------CCCCHHHHHHHHHHHCCCCCCCCCCHHH T ss_conf 885-112100212132430-16884784432324753232178764------4788057888998642434476568899 Q ss_pred HHHHH---------HHHHHCCCCC--------CCCC-----------------CCCHHH----------HHHCCCHHHHH Q ss_conf 68777---------6432100001--------3510-----------------059677----------63021101279 Q gi|254780573|r 327 LTEAE---------ILLSKWPQTS--------TSKG-----------------IIDPAV----------LSALYNDLNTV 362 (461) Q Consensus 327 L~~A~---------~~l~kl~~~~--------~~~~-----------------~~~~~f----------~~AL~DDLNTp 362 (461) T Consensus 391 f~~r~N~~L~n~lGNl~nR~~~f~~k~f~g~~~~~~~~nfqfqeifqneP~l~~~~~~l~~~~~~~~~~~~~~~~~~~f~ 470 (573) T TIGR00398 391 FVERVNADLANDLGNLLNRTLGFIKKYFNGVLPSVDETNFQFQEIFQNEPKLTEEDKELLKKINETLEQIDKALESFEFR 470 (573) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99997688776555899999999988735621101012345666650376522356689999999999999988620389 Q ss_pred HHHHHHHHHHHHHCCC Q ss_conf 9999999999975130 Q gi|254780573|r 363 SAIQALHKLARESTKN 378 (461) Q Consensus 363 ~ALa~L~~lvk~~n~~ 378 (461) T Consensus 471 ~Al~~~~~L~~~gNky 486 (573) T TIGR00398 471 KALEEILKLADRGNKY 486 (573) T ss_pred HHHHHHHHHHHHHHHH T ss_conf 9999999999986147 |
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Methionyl-tRNA synthetase (6.1.1.10 from EC) is an alpha 2 dimer that belongs to class Ia. In some species (archaea, eubacteria and eukaryota) a coding sequence, similar to the C-term end of MetRS, is present as an independent gene which is a tRNA binding domain as a dimer. In eubacteria, MetRS can also be splitted in two sub-classes corresponding to the presence of one or two CXXC domain specific to zinc binding. The crystal structures of a number of methionyl-tRNA synthases are known , , .; GO: 0000166 nucleotide binding, 0004825 methionine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006431 methionyl-tRNA aminoacylation, 0005737 cytoplasm. |
| >KOG0436 consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-17 Score=145.63 Aligned_cols=329 Identities=22% Similarity=0.280 Sum_probs=210.8 Q ss_pred EEEEECCCCC--CCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC-CHHHHHHHHHCCCCCCCCCCHHHHHHHH Q ss_conf 9996167888--844411127999999999999970799845799605523-3888999987089864488489999999 Q gi|254780573|r 27 RMYVCGPTVY--DFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDI-DDKIIERARQEHPSIPINDAISIITSKN 103 (461) Q Consensus 27 ~~Y~CGpTvy--~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDi-dDkii~~a~~~~~~~~~~~~~~~~a~~~ 103 (461) T Consensus 40 ~~~lTTPifYvNAaPHlGhlYS~llaDai~R~q~lkg~--~v~fsTG-TDEHGlKIqtaaatnG~~------P~e~cDr~ 110 (578) T KOG0436 40 TFVLTTPIFYVNAAPHLGHLYSTLLADAIARFQRLKGK--KVIFSTG-TDEHGLKIQTAAATNGRN------PPELCDRI 110 (578) T ss_pred EEEEECCEEECCCCCCHHHHHHHHHHHHHHHHHHHCCC--CEEEECC-CCCCCHHHHHHHHHCCCC------HHHHHHHH T ss_conf 05984551314788514579999999999999863588--0686037-775442243368655999------07888665 Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHH--HHHHHHHHHHHHHHCCCCCCCCC-CEEE-------CCHHCCCCCCCCCCCHHHH Q ss_conf 999999877626854100012356--77778999998741143201289-2875-------2200245432246754666 Q gi|254780573|r 104 TQQFVKDTTRLACLAPTHQPRATN--HIPQMIYLIQNIILHGHAYEANN-EIIF-------DTSSIPNYGSFSRRKIDEQ 173 (461) Q Consensus 104 ~~~f~~d~~~L~v~~p~~~pr~t~--~i~~~i~~i~~L~~~g~aY~~~g-~VyF-------dv~~~~~YG~Ls~~~~~~~ 173 (461) T Consensus 111 s~~f~qL~k~~gi~y-t~FIRTTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEtf~pEskv~k~p~~~g-k~vsm 188 (578) T KOG0436 111 SQSFRQLWKDAGIAY-TKFIRTTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDETFYPESKVLKNPCPPG-KVVSM 188 (578) T ss_pred HHHHHHHHHHHCCCH-HHEEECCCCHHHHHHHHHHHHHHHCCCEEEECCCCEEECCCCCCCCHHHHHCCCCCCC-CEEEE T ss_conf 199999999829633-4212248910899999999999867836520235168605300287888713889998-54540 Q ss_pred HHHHHCCCCCCCCCCCCEEEEECCCCC------CCE-------------E---------------ECCCCCCCCC----- Q ss_conf 643210222210123512666337766------631-------------4---------------1467766764----- Q gi|254780573|r 174 KMGTRVPEKYHKKNPADFILWKRSTPM------EPG-------------W---------------ESPWGRGRPG----- 214 (461) Q Consensus 174 ~~g~r~~~~~~K~~p~DFaLWK~~~~~------e~~-------------w---------------~spwG~GRPG----- 214 (461) T Consensus 189 Esg~~v--v~~kE~NY~FrLSkfqk~l~d~lrkNP~fvqPs~~~~qVl~~lktglpDlSISRpsarl~WGIPvP~ddsQt 266 (578) T KOG0436 189 ESGNPV--VWRKEDNYFFRLSKFQKPLEDHLRKNPRFVQPSYFHNQVLSWLKTGLPDLSISRPSARLDWGIPVPGDDSQT 266 (578) T ss_pred CCCCCE--EEECCCCEEEEHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCE T ss_conf 468942--676156501008755128999984499746760778899999973798653257033013488889998626 Q ss_pred ---CCC-HH---HHHHHH----------HCCCCEEEEEECCC-CCCCCCHHHHHHHHHHCCCCCCHHHEECCCEEEEEEC Q ss_conf ---332-04---777787----------52984148741356-6668751366888864087530121003432576420 Q gi|254780573|r 215 ---WHI-EC---SAMSSH----------YLGKVFDIHGGGLD-LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGR 276 (461) Q Consensus 215 ---WHi-EC---sam~~~----------~lg~~~DIH~GG~D-L~FPHHENEiAQs~a~~~~~~~a~yWlH~G~l~i~ge 276 (461) T Consensus 267 IYVWfDAL~nYiSvig~~~~~~N~k~~ls~~wPat~HvIGKDIlrF-HavYWPafLmaAG-lplP~~I~vH-ghwt~ngm 343 (578) T KOG0436 267 IYVWFDALLNYISVIGYPNKQQNLKTALSFGWPATLHVIGKDILRF-HAVYWPAFLMAAG-LPLPKMIFVH-GHWTKNGM 343 (578) T ss_pred EEEEHHHHHHHHHHHCCCCHHCCCCCEEECCCCCEEEEHHHHHHHH-HHHHHHHHHHHCC-CCCCCEEEEE-EEEEECCE T ss_conf 9875998865788606882102400015237875123201445664-5545189998669-9986179884-12654222 Q ss_pred CCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHH-CCCCCCCCCCCHHHHHHHH---------HHHHHCCC--CCCCC Q ss_conf 223323321408998502533455777999999984-2566432114503468777---------64321000--01351 Q gi|254780573|r 277 KMSKSNGNFITINELLETKKFGGRSWPAPVIRLAML-MTHYREPIDFTVQRLTEAE---------ILLSKWPQ--TSTSK 344 (461) Q Consensus 277 KMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~lL-sshYRspLdfS~e~L~~A~---------~~l~kl~~--~~~~~ 344 (461) T Consensus 344 KMsKSLGNvvdP~~l~-------~kygvD~vRyflLr~~~l~~Dgdy~eekl~k~~n~~La~~lG~LlnRc~gkkln~sn 416 (578) T KOG0436 344 KMSKSLGNVVDPFELV-------QKYGVDAVRYFLLREGELGNDGDYSEEKLIKIVNAHLANTLGNLLNRCLGKKLNISN 416 (578) T ss_pred ECCHHHCCCCCHHHHH-------HHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHC T ss_conf 1021204646889999-------883844156675553520788881299999999999999998998887521357001 Q ss_pred --------C-----C---C------CHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC Q ss_conf --------0-----0---5------9677630211012799999999999975130 Q gi|254780573|r 345 --------G-----I---I------DPAVLSALYNDLNTVSAIQALHKLARESTKN 378 (461) Q Consensus 345 --------~-----~---~------~~~f~~AL~DDLNTp~ALa~L~~lvk~~n~~ 378 (461) T Consensus 417 ~e~~l~~~s~~v~ae~~~lv~~v~kl~ev~a~~~d~f~~~~ale~V~si~n~~ntl 472 (578) T KOG0436 417 CESTLVVDSPTVAAEGEPLVDTVEKLPEVAATNYDNFSLYSALEAVLSIGNAGNTL 472 (578) T ss_pred CCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 56300247742553145289999975899985403330999999999999753156 |
|
| >KOG4426 consensus | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.02 Score=37.73 Aligned_cols=285 Identities=19% Similarity=0.184 Sum_probs=150.5 Q ss_pred CCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC-------------------------- Q ss_conf 798479996167888844411127999999999999970799845799605523-------------------------- Q gi|254780573|r 22 DPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDI-------------------------- 75 (461) Q Consensus 22 ~~~~v~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDi-------------------------- 75 (461) T Consensus 186 ~~KrvlVDFSSPNIAKeMHVGHLRSTIIGdsl~RllE~~~~d--VlR~NHvGDWGTQFGMLIahL~dkFPd~l~vsp~Ig 263 (656) T KOG4426 186 SVKRVLVDFSSPNIAKEMHVGHLRSTIIGDSLCRLLEFSGVD--VLRRNHVGDWGTQFGMLIAHLFDKFPDYLSVSPPIG 263 (656) T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--EEEECCCCCHHHHHHHHHHHHHHHCCCHHCCCCCCH T ss_conf 103689835897377776310456566768899999860761--675224550577888999999986876000489841 Q ss_pred ---------------CHHHHHHHHH-----CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH Q ss_conf ---------------3888999987-----08986448848999999999999987762685410001235677778999 Q gi|254780573|r 76 ---------------DDKIIERARQ-----EHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYL 135 (461) Q Consensus 76 ---------------dDkii~~a~~-----~~~~~~~~~~~~~~a~~~~~~f~~d~~~L~v~~p~~~pr~t~~i~~~i~~ 135 (461) T Consensus 264 DLQvFYkeSKkrFD~deeFKkrAyq~VV~LQggdp~~~kAW~~ICdvSr~ef~kvY~rLdi~l~e--~GESFYq~~m~~v 341 (656) T KOG4426 264 DLQVFYKESKKRFDEDEEFKKRAYQAVVRLQGGDPDIRKAWALICDVSRKEFQKVYNRLDISLKE--RGESFYQDRMAEV 341 (656) T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH--CCHHHHHHHHHHH T ss_conf 68999998875268578899999877024206997099999999776589999999874003764--3454420689999 Q ss_pred HHHHHHCCCCCCCCC-CEEECCHHCCCCCCCCCCCHHHHHHHHHCCCCC-CCCCCCCE-EEEECCCCCCCEEECCCCCCC Q ss_conf 998741143201289-287522002454322467546666432102222-10123512-666337766631414677667 Q gi|254780573|r 136 IQNIILHGHAYEANN-EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKY-HKKNPADF-ILWKRSTPMEPGWESPWGRGR 212 (461) Q Consensus 136 i~~L~~~g~aY~~~g-~VyFdv~~~~~YG~Ls~~~~~~~~~g~r~~~~~-~K~~p~DF-aLWK~~~~~e~~w~spwG~GR 212 (461) T Consensus 342 veel~~kglvee~~Gr~i~f~~g----~~----IPL------tvVKSDGGftYdtsDlaAl~yRl~EEkadwi------- 400 (656) T KOG4426 342 VEELKSKGLVEEDDGRRIMFPEG----CD----IPL------TVVKSDGGFTYDTSDLAALKYRLNEEKADWI------- 400 (656) T ss_pred HHHHHCCCCEEECCCCEEECCCC----CC----CCE------EEEECCCCCCCCCCHHHHHHHHHHHHHCCEE------- T ss_conf 99971389555158945865479----98----615------9996489855251069999999877634759------- Q ss_pred CCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCHHH---HHHHHHHCCCCCCHHHEECCCEEEE---EECCCCCCCCCCC Q ss_conf 643320477778752984148741356666875136---6888864087530121003432576---4202233233214 Q gi|254780573|r 213 PGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENE---IAQSCCADRIEKTANIWIHNGFLNL---EGRKMSKSNGNFI 286 (461) Q Consensus 213 PGWHiECsam~~~~lg~~~DIH~GG~DL~FPHHENE---iAQs~a~~~~~~~a~yWlH~G~l~i---~geKMSKSlGN~i 286 (461) T Consensus 401 ------------------IYVvD~GQs~----Hf~t~fkAar~~gwl--d~~~~RV~HvgFGlVLGeD~KkFkTRsgetV 456 (656) T KOG4426 401 ------------------IYVVDSGQSQ----HFNTIFKAARKAGWL--DPTYPRVEHVGFGLVLGEDKKKFKTRSGETV 456 (656) T ss_pred ------------------EEEEECCHHH----HHHHHHHHHHHCCCC--CCCCCCEEEEEEEEEECCCCCCCCCCCCCEE T ss_conf ------------------9996075267----899999999870754--7776420001333687467620004566514 Q ss_pred CHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH--CCCCCCCC---CCCCHHHHHHCCCHHHH Q ss_conf 08998502533455777999999984256643211450346877764321--00001351---00596776302110127 Q gi|254780573|r 287 TINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSK--WPQTSTSK---GIIDPAVLSALYNDLNT 361 (461) Q Consensus 287 ti~dlL~~~~~~~k~y~p~viR~~lLsshYRspLdfS~e~L~~A~~~l~k--l~~~~~~~---~~~~~~f~~AL~DDLNT 361 (461) T Consensus 457 rL~DLLdEg~kR----s----~~~Lier-g-rdk~~tpeeL~~a~eavayGciKYaDL~hnR~~dY~FSFDkML~DrGnT 526 (656) T KOG4426 457 RLLDLLDEGKKR----S----KEKLIER-G-RDKVLTPEELDAAQEAVAYGCIKYADLSHNRITDYIFSFDKMLEDRGNT 526 (656) T ss_pred EHHHHHHHHHHH----H----HHHHHHH-C-CCCCCCHHHHHHHHHHHHHCCHHHHHHCCCCCCCEEEEHHHHHHCCCCC T ss_conf 289888788888----9----9999971-6-6654899999999998874302376504552034165688886546861 Q ss_pred HHHH Q ss_conf 9999 Q gi|254780573|r 362 VSAI 365 (461) Q Consensus 362 p~AL 365 (461) T Consensus 527 AvYL 530 (656) T KOG4426 527 AVYL 530 (656) T ss_pred EEHH T ss_conf 0035 |
|
| >cd07963 Anticodon_Ia_Cys Anticodon-binding domain of cysteinyl tRNA synthetases | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.7e-26 Score=205.46 Aligned_cols=130 Identities=27% Similarity=0.358 Sum_probs=106.2 Q ss_pred HHHHHHHHHHHHHCCCCCCCCC----------CCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCH--------HHHHHH Q ss_conf 0346877764321000013510----------0596776302110127999999999999751306--------799999 Q gi|254780573|r 324 VQRLTEAEILLSKWPQTSTSKG----------IIDPAVLSALYNDLNTVSAIQALHKLARESTKNH--------DLLPIF 385 (461) Q Consensus 324 ~e~L~~A~~~l~kl~~~~~~~~----------~~~~~f~~AL~DDLNTp~ALa~L~~lvk~~n~~~--------~~~~~~ 385 (461) T Consensus 1 de~L~~Ak~~Ldrly~~l~~~~~~~~~~~~~~~~~~~F~~Am~DDlNTp~Ala~lf~~vk~iN~~~~~~~~~~~~~~~~l 80 (156) T cd07963 1 DDNLEDARAALERLYTALRGVPPTTVDIDWGEPFAERFIAAMDDDFNTPEALAVLFELAREINRLKKEDIEKAAALAALL 80 (156) T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH T ss_conf 93599999999999999857785545640016899999999876348799999999999999986046767899999999 Q ss_pred HHHHHHCCCCCCC--------CCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCEEE Q ss_conf 9999871767432--------00014678999999999999988179899999999999889799986998877860488 Q gi|254780573|r 386 NASAHILGIEVCK--------EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRW 457 (461) Q Consensus 386 ~~~~~iLGl~~~~--------~~~~~~~~~~I~~Li~~R~~AR~~KDf~~AD~IRdeL~~~GI~ieDt~dG~~w~~~T~W 457 (461) T Consensus 81 ~~~~~vLGll~~~~~~~~~~~~~~~~~~~~~I~~Li~~R~~AR~~Kdf~~AD~IRd~L~~~Gi~ieDt~~G------t~W 154 (156) T cd07963 81 KALGGVLGLLQQDPEAFLQGGTGEGGLSVAEIEALIAQRNQARKAKDWAEADRIRDELAAQGIILEDSPEG------TTW 154 (156) T ss_pred HHHHHHCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCC------CEE T ss_conf 99998649877898999722555453579999999999999998399789999999999879278877999------701 Q ss_pred EE Q ss_conf 72 Q gi|254780573|r 458 KQ 459 (461) Q Consensus 458 k~ 459 (461) T Consensus 155 rr 156 (156) T cd07963 155 RR 156 (156) T ss_pred CC T ss_conf 39 |
This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA. |
| >PRK13208 valS valyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.5e-22 Score=176.98 Aligned_cols=134 Identities=24% Similarity=0.290 Sum_probs=104.5 Q ss_pred CEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCHHHEECCCEE-EEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHH Q ss_conf 414874135666687513668888640875301210034325-7642022332332140899850253345577799999 Q gi|254780573|r 230 VFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFL-NLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIR 308 (461) Q Consensus 230 ~~DIH~GG~DL~FPHHENEiAQs~a~~~~~~~a~yWlH~G~l-~i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR 308 (461) T Consensus 491 P~d~~~~G~Di~r~W~~~~l~~~~~l~~~~Pfk~v~~~-G~vld~~G~KMSKS~GNvi~p~eii-------~~yGADalR 562 (809) T PRK13208 491 PADLRPQGHDIIRTWLFYTILRAYLLTGKLPWKNIMIS-GMVLDPDGKKMSKSKGNVVDPEELL-------EKYGADAVR 562 (809) T ss_pred CCCEEECHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCC-CEEECCCCCCCCCCCCCCCCHHHHH-------HHCCCHHHH T ss_conf 85244340598873999999999985388860201114-6055467743477788968978986-------533809999 Q ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC---C-------------CCCCCH-----------HHHHHCCCHHHH Q ss_conf 9984256643211450346877764321000013---5-------------100596-----------776302110127 Q gi|254780573|r 309 LAMLMTHYREPIDFTVQRLTEAEILLSKWPQTST---S-------------KGIIDP-----------AVLSALYNDLNT 361 (461) Q Consensus 309 ~~lLsshYRspLdfS~e~L~~A~~~l~kl~~~~~---~-------------~~~~~~-----------~f~~AL~DDLNT 361 (461) T Consensus 563 ~~la~~~~~~d~~~~~~~~~~~~~~~~klwN~~rf~~~~~~~~~~~~~~~~~~~lDrwils~l~~~i~~v~~~~-e~y~f 641 (809) T PRK13208 563 YWAANSRLGSDTRFSEKQIKIGKRLLTKLWNASRFVSSFIEPEKIEEKAPILEPVDRWILAKLNRVVKKATEAL-ENYDF 641 (809) T ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HCCCH T ss_conf 99961894446566899999999999999999999997035456667632257889999999999999999999-73589 Q ss_pred HHHHHHHHHHH Q ss_conf 99999999999 Q gi|254780573|r 362 VSAIQALHKLA 372 (461) Q Consensus 362 p~ALa~L~~lv 372 (461) T Consensus 642 ~~a~~~i~~F~ 652 (809) T PRK13208 642 AEALEEIESFF 652 (809) T ss_pred HHHHHHHHHHH T ss_conf 99999999999 |
|
| >PRK05729 valS valyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=2e-20 Score=166.30 Aligned_cols=133 Identities=26% Similarity=0.342 Sum_probs=92.7 Q ss_pred EEEEEECCCCCCCCCHHHHHHHHHHCCCCCCHHHEECCCEE-EEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHH Q ss_conf 14874135666687513668888640875301210034325-76420223323321408998502533455777999999 Q gi|254780573|r 231 FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFL-NLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRL 309 (461) Q Consensus 231 ~DIH~GG~DL~FPHHENEiAQs~a~~~~~~~a~yWlH~G~l-~i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~ 309 (461) T Consensus 476 ~d~~~~G~Dii~fWv~rm~~~~~~~~~~~Pfk~v~~h-G~v~D~~G~KMSKS~GNvidP~~vi-------~~yGaDalR~ 547 (877) T PRK05729 476 TSVLVTGFDIIFFWVARMIMMGLHFTGQVPFKDVYIH-GLVRDEQGRKMSKSKGNVIDPLDLI-------DKYGADALRF 547 (877) T ss_pred CCCCCCCCCHHEEEEEEEECCEEEECCCCCCHHCCCC-CEEECCCCCCCCCCCCCCCCHHHHH-------HHCCHHHHHH T ss_conf 7545206552113444443103201123761102004-4378898877878788989989999-------8719199999 Q ss_pred HHHC-CCCCCCCCCCHHHHHHHHHHHHHCCCCCC------C---CC---------CCC-----------HHHHHHCCCHH Q ss_conf 9842-56643211450346877764321000013------5---10---------059-----------67763021101 Q gi|254780573|r 310 AMLM-THYREPIDFTVQRLTEAEILLSKWPQTST------S---KG---------IID-----------PAVLSALYNDL 359 (461) Q Consensus 310 ~lLs-shYRspLdfS~e~L~~A~~~l~kl~~~~~------~---~~---------~~~-----------~~f~~AL~DDL 359 (461) T Consensus 548 ~l~~~~~~g~di~~~~~~v~~~r~f~nKlwN~~rf~~~~~~~~~~~~~~~~~~~~~~D~WIlskL~~~i~~v~~~~-~~y 626 (877) T PRK05729 548 TLAALASPGRDIRFDEERVEGYRNFANKLWNASRFVLMNLEGQDPGFLPDEAELSLADRWILSRLNRTVAEVTEAL-DKY 626 (877) T ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-CCC T ss_conf 9997077676600068999999999999999999999724656644456621067879999999999999998750-002 Q ss_pred HHHHHHHHHHHHH Q ss_conf 2799999999999 Q gi|254780573|r 360 NTVSAIQALHKLA 372 (461) Q Consensus 360 NTp~ALa~L~~lv 372 (461) T Consensus 627 ~f~~a~~~ly~F~ 639 (877) T PRK05729 627 RFDEAAQALYEFI 639 (877) T ss_pred CHHHHHHHHHHHH T ss_conf 0999999999984 |
|
| >PRK13804 ileS isoleucyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-19 Score=160.00 Aligned_cols=135 Identities=20% Similarity=0.252 Sum_probs=95.1 Q ss_pred EEEEEECCCCCCCCCHHHHHHHHHHCCCCCCHHHEECCCEEE-EEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHH Q ss_conf 148741356666875136688886408753012100343257-6420223323321408998502533455777999999 Q gi|254780573|r 231 FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLN-LEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRL 309 (461) Q Consensus 231 ~DIH~GG~DL~FPHHENEiAQs~a~~~~~~~a~yWlH~G~l~-i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~ 309 (461) T Consensus 590 aD~y~eG~Dq~rgWF~s~l~~s~~~~~~~Pfk~v~~h-G~VlDe~G~KMSKS~GNvvdP~~ii-------~~yGADalRl 661 (966) T PRK13804 590 ADLYLEGSDQHRGWFHSSLLESCGTRGRAPYKAVLTH-GFTLDEKGEKMSKSLGNVVDPQDVI-------KQSGADILRL 661 (966) T ss_pred CCEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEC-CEEECCCCCCCCCCCCCCCCHHHHH-------HHCCCHHHHH T ss_conf 4168625418886999999874220688774510341-1689889888878788989989999-------8729218889 Q ss_pred HHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC----CCCC--------------CCHHHH----------HHCCCHHHH Q ss_conf 984256643211450346877764321000013----5100--------------596776----------302110127 Q gi|254780573|r 310 AMLMTHYREPIDFTVQRLTEAEILLSKWPQTST----SKGI--------------IDPAVL----------SALYNDLNT 361 (461) Q Consensus 310 ~lLsshYRspLdfS~e~L~~A~~~l~kl~~~~~----~~~~--------------~~~~f~----------~AL~DDLNT 361 (461) T Consensus 662 ~~as~~~~~d~~~~~~~l~~~~~~~~ki~Nt~rf~l~nl~~f~~~~~~~~~~l~~~D~wil~~l~~~~~~v~~~~~~Y~f 741 (966) T PRK13804 662 WVASVDYQDDQRIGKEILKTNAETYRKLRNTLRWMLGTLAHFDPGEAVAYADLPELERLMLHRLNELDATVRKAYEAFDF 741 (966) T ss_pred HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99847754463456899999999999999999999986427983234892235287899999999999999998511359 Q ss_pred HHHHHHHHHHHH Q ss_conf 999999999999 Q gi|254780573|r 362 VSAIQALHKLAR 373 (461) Q Consensus 362 p~ALa~L~~lvk 373 (461) T Consensus 742 ~~a~~~l~~F~~ 753 (966) T PRK13804 742 KTIYKALVNFMT 753 (966) T ss_pred HHHHHHHHHHHH T ss_conf 999999999999 |
|
| >PRK12300 leuS leucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.5e-15 Score=128.89 Aligned_cols=139 Identities=29% Similarity=0.351 Sum_probs=97.3 Q ss_pred CEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCHHHEECCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHH Q ss_conf 41487413566668751366888864087530121003432576420223323321408998502533455777999999 Q gi|254780573|r 230 VFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRL 309 (461) Q Consensus 230 ~~DIH~GG~DL~FPHHENEiAQs~a~~~~~~~a~yWlH~G~l~i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~ 309 (461) T Consensus 524 P~D~~~~G~D~i~~hl~f~~~~~~aif~~~~~pk~v~~~G~Vl~eG~KMSKSkGNvV~P~eiI-------~~YGADalRl 596 (888) T PRK12300 524 PLDWRHSGKDLIPNHLTFFIFNHVAIFPEEKWPRGIVVNGFVLLEGKKMSKSKGNVLPLREAI-------EEYGADVVRL 596 (888) T ss_pred CCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCEECCCCCCCCCCHHHHH-------HHCCCCHHHH T ss_conf 760143531033567999998868871777788757983289459877030348989989999-------7619629999 Q ss_pred HHHC-CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC---------CCCHHHHHHC----------CCHHHHHHHHHHH- Q ss_conf 9842-56643211450346877764321000013510---------0596776302----------1101279999999- Q gi|254780573|r 310 AMLM-THYREPIDFTVQRLTEAEILLSKWPQTSTSKG---------IIDPAVLSAL----------YNDLNTVSAIQAL- 368 (461) Q Consensus 310 ~lLs-shYRspLdfS~e~L~~A~~~l~kl~~~~~~~~---------~~~~~f~~AL----------~DDLNTp~ALa~L- 368 (461) T Consensus 597 ~l~~~a~~~~d~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~D~wils~l~~~i~~v~~~~e~~~f~~a~~~~~ 676 (888) T PRK12300 597 YLASTAELSQDADFREKEAESIRRQLERFYELAVELAEEESEEELRFIDKWLLSRLYSYIKEVTEAMEEFQTRKAIQEIF 676 (888) T ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH T ss_conf 99971885568645799999999999999999997632677767766789999999999999999998445999999999 Q ss_pred HHHHHHH Q ss_conf 9999975 Q gi|254780573|r 369 HKLARES 375 (461) Q Consensus 369 ~~lvk~~ 375 (461) T Consensus 677 ~~~~~~~ 683 (888) T PRK12300 677 YNLLNDL 683 (888) T ss_pred HHHHHHH T ss_conf 9999999 |
|
| >COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.8e-13 Score=112.53 Aligned_cols=140 Identities=21% Similarity=0.213 Sum_probs=104.0 Q ss_pred CEEEEEECCCCCCCCCHHHHHHHHHHCCC------CCCHHHEECCCEEEE-EECCCCCCCCCCCCHHHHHCCCCCCCCCC Q ss_conf 41487413566668751366888864087------530121003432576-42022332332140899850253345577 Q gi|254780573|r 230 VFDIHGGGLDLIFPHHENEIAQSCCADRI------EKTANIWIHNGFLNL-EGRKMSKSNGNFITINELLETKKFGGRSW 302 (461) Q Consensus 230 ~~DIH~GG~DL~FPHHENEiAQs~a~~~~------~~~a~yWlH~G~l~i-~geKMSKSlGN~iti~dlL~~~~~~~k~y 302 (461) T Consensus 526 PVD~yigG~ehavlHLly~rF~hkal~d~g~~p~~epf~~-L~~qGmVl~~~g~KMSKSKgN~v~p~~~i-------~~y 597 (814) T COG0495 526 PVDLYIGGIEHAVLHLLYFRFFHKALFDEGLVPKDEPFKK-LITQGMVLGEEGEKMSKSKGNVVDPEEAV-------EKY 597 (814) T ss_pred CHHEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH-HHCCCEEEECCCCCCCCCCCCCCCHHHHH-------HHH T ss_conf 7201226366777889999999988347577877650444-41142687427770454457888989999-------995 Q ss_pred CHHHHHHHHH-CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC-----CC-C----------HHHHHHCCCHHHH---- Q ss_conf 7999999984-256643211450346877764321000013510-----05-9----------6776302110127---- Q gi|254780573|r 303 PAPVIRLAML-MTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG-----II-D----------PAVLSALYNDLNT---- 361 (461) Q Consensus 303 ~p~viR~~lL-sshYRspLdfS~e~L~~A~~~l~kl~~~~~~~~-----~~-~----------~~f~~AL~DDLNT---- 361 (461) T Consensus 598 GADt~Rl~~m~~ap~~~d~~W~e~gv~g~~rfL~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~v~~~~e~~~~~ 677 (814) T COG0495 598 GADTVRLYIMFAAPPEQDLEWSESGVEGARRFLQRVWNLVKEHLEKLVEELTKEQGKEDRWLLHRTIKKVTEDFEARQTF 677 (814) T ss_pred CCHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 84098999986087753788774564899999999999999864023333553056889999999999999999999889 Q ss_pred HHHHHHHHHHHHHHCC Q ss_conf 9999999999997513 Q gi|254780573|r 362 VSAIQALHKLARESTK 377 (461) Q Consensus 362 p~ALa~L~~lvk~~n~ 377 (461) T Consensus 678 nt~i~~~m~l~N~l~~ 693 (814) T COG0495 678 NTAIAALMELLNALRK 693 (814) T ss_pred HHHHHHHHHHHHHHHH T ss_conf 9999999999999999 |
|
| >COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.8e-13 Score=111.71 Aligned_cols=116 Identities=23% Similarity=0.304 Sum_probs=90.2 Q ss_pred HHHHHHCCCCCCHHHEECCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHH Q ss_conf 88886408753012100343257642022332332140899850253345577799999998425664321145034687 Q gi|254780573|r 250 AQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTE 329 (461) Q Consensus 250 AQs~a~~~~~~~a~yWlH~G~l~i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~lLsshYRspLdfS~e~L~~ 329 (461) T Consensus 575 ~~s~a~~~~aPYk~vltHGfvlDe~GrKMSKSlGN~v~P~~V~-------~~yGADiLRLwv~ssd~~~dl~~s~~il~~ 647 (933) T COG0060 575 LTSTALFGRAPYKNVLTHGFVLDEKGRKMSKSLGNVVDPQDVI-------DKYGADILRLWVASSDYWEDLRFSDEILKQ 647 (933) T ss_pred HHHHHHCCCCHHHHHHHCCCEECCCCCCCCCCCCCCCCHHHHH-------HHHCCHHEEEEEEECCCHHCCCCCHHHHHH T ss_conf 9999972885078776326178888887655578818989998-------762763404665615823032027889999 Q ss_pred HHHHHHHCCCCCC----CCCC---------------CCH-----------HHHHHCCCHHHHHHHHHHHHHHHH Q ss_conf 7764321000013----5100---------------596-----------776302110127999999999999 Q gi|254780573|r 330 AEILLSKWPQTST----SKGI---------------IDP-----------AVLSALYNDLNTVSAIQALHKLAR 373 (461) Q Consensus 330 A~~~l~kl~~~~~----~~~~---------------~~~-----------~f~~AL~DDLNTp~ALa~L~~lvk 373 (461) T Consensus 648 ~~~~~r~irNt~rF~l~nl~~fdp~~~~~~~~~~~~~Drwil~rl~~l~~~v~-eaye~y~f~~v~~~l~~F~~ 720 (933) T COG0060 648 VREVYRKIRNTYRFLLGNLDDFDPKKDAVLPEELRELDRWILSRLNSLVKEVR-EAYENYDFHKVVRALMNFVS 720 (933) T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHH-HHHHHCCHHHHHHHHHHHHH T ss_conf 99999999999999988505899421335144423217999999999999999-99984679999999999988 |
|
| >TIGR00392 ileS isoleucyl-tRNA synthetase; InterPro: IPR002301 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.2e-12 Score=107.70 Aligned_cols=123 Identities=22% Similarity=0.241 Sum_probs=86.7 Q ss_pred HHHHC--CCCCCHHHEECCCEEEEEECCCCCCCCCCCCHHHHHC-CCCCCCCCCCHHHHHHHHHCC--CCCCCCCCCHHH Q ss_conf 88640--8753012100343257642022332332140899850-253345577799999998425--664321145034 Q gi|254780573|r 252 SCCAD--RIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLE-TKKFGGRSWPAPVIRLAMLMT--HYREPIDFTVQR 326 (461) Q Consensus 252 s~a~~--~~~~~a~yWlH~G~l~i~geKMSKSlGN~iti~dlL~-~~~~~~k~y~p~viR~~lLss--hYRspLdfS~e~ 326 (461) T Consensus 642 ~~~~~nv~~~PYK~Vi~hGF~LDe~G~KMSKSlGNvV~P~~v~~G~~N~~~P~yGAD~LRlyv~~~P~~~~~Dl~~~~~~ 721 (938) T TIGR00392 642 GVALFNVGKAPYKNVITHGFTLDEKGRKMSKSLGNVVDPEKVINGDENLKLPKYGADILRLYVASSPSDYWEDLRFSDEI 721 (938) T ss_pred HHHHHCCCCCCCCEEEECCEEECCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHCCCCCHHH T ss_conf 99987078854363453154885778544532587038599708843358875330487777884687400022006689 Q ss_pred HHHHHHHHHHCCC----CCC---CCCC---------------CCHHHHH----------HCCCHHHHHHHHHHHHHHHHH Q ss_conf 6877764321000----013---5100---------------5967763----------021101279999999999997 Q gi|254780573|r 327 LTEAEILLSKWPQ----TST---SKGI---------------IDPAVLS----------ALYNDLNTVSAIQALHKLARE 374 (461) Q Consensus 327 L~~A~~~l~kl~~----~~~---~~~~---------------~~~~f~~----------AL~DDLNTp~ALa~L~~lvk~ 374 (461) T Consensus 722 ~~~v~~~~~~~~~N~~~Fl~~YanL~~f~p~~~~~~~~~~~~~Drw~L~~l~~l~~~v~~~~e~Y~f~~~~~~l~~F~~~ 801 (938) T TIGR00392 722 LKQVAEKYRKIRWNTYRFLLTYANLDKFDPEEKAVAVEKFRELDRWILSRLNSLVEEVNEALEKYNFHKVLRALQDFIVE 801 (938) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH T ss_conf 99999987688999999999988760778730023112030113999999999999999986263246788889876312 |
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Isoleucyl-tRNA synthetase (6.1.1.5 from EC) is an alpha monomer that belongs to class Ia. The enzyme, isoleucyl-transfer RNA synthetase, activates not only the cognate substrate L-isoleucine but also the minimally distinct L-valine in the first, aminoacylation step. Then, in a second, "editing" step, the synthetase itself rapidly hydrolyzes only the valylated products , as shown from the crystal structures. ; GO: 0000166 nucleotide binding, 0004822 isoleucine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006428 isoleucyl-tRNA aminoacylation, 0005737 cytoplasm. |
| >PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=98.40 E-value=7e-06 Score=62.40 Aligned_cols=136 Identities=21% Similarity=0.252 Sum_probs=94.6 Q ss_pred CEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCHHHEECCCEEE-EEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHH Q ss_conf 4148741356666875136688886408753012100343257-642022332332140899850253345577799999 Q gi|254780573|r 230 VFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLN-LEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIR 308 (461) Q Consensus 230 ~~DIH~GG~DL~FPHHENEiAQs~a~~~~~~~a~yWlH~G~l~-i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR 308 (461) T Consensus 547 PaD~i~eg~Dq~RgWF~sl~~~s~~~~~~~Pfk~v~~~-G~Vld~~G~KMSKS~GNvidP~~vi-------~~yGADalR 618 (1042) T PRK06039 547 PADFIVEGIDQTRGWFYTLLALSTALFDRPPYKNVIVH-GHVLDEDGQKMSKSLGNYVDPFEVF-------DKYGADALR 618 (1042) T ss_pred CCEEEEECCCHHEEEEEEEEEEEEEECCCCCCCEEEEE-EEEECCCCEECCCCCCCCCCHHHHH-------HHCCCHHHH T ss_conf 64444523222101436000321223484200258995-0387368648033678868979998-------860827999 Q ss_pred HHHHCCCC-CCCCCCCHHHHH-HHHHHHHHCCCCCC------CCCC---------------CC-----------HHHHHH Q ss_conf 99842566-432114503468-77764321000013------5100---------------59-----------677630 Q gi|254780573|r 309 LAMLMTHY-REPIDFTVQRLT-EAEILLSKWPQTST------SKGI---------------ID-----------PAVLSA 354 (461) Q Consensus 309 ~~lLsshY-RspLdfS~e~L~-~A~~~l~kl~~~~~------~~~~---------------~~-----------~~f~~A 354 (461) T Consensus 619 l~l~~~~~~~~d~~f~~~~v~e~~r~~~~~lwN~~rF~~~y~~ld~f~~~~~~~~~~~~~~~DrWils~l~~~i~~v~~~ 698 (1042) T PRK06039 619 WYLLSSSVPWEDLRFSEDGIREVVRKFLLPLWNVYSFFALYANLDGFDPNEAEEALDSRNELDRWILSRLNSLVKEVTEA 698 (1042) T ss_pred HHHHHCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 99996677555615779999999999999999999999874210279954355563216687899999999999999999 Q ss_pred CCCHHHHHHHHHHHHHHHHH Q ss_conf 21101279999999999997 Q gi|254780573|r 355 LYNDLNTVSAIQALHKLARE 374 (461) Q Consensus 355 L~DDLNTp~ALa~L~~lvk~ 374 (461) T Consensus 699 ~-~~y~~~~a~~~l~~Fi~d 717 (1042) T PRK06039 699 L-DNYDITKAARAIRDFVDD 717 (1042) T ss_pred H-HHCCHHHHHHHHHHHHHH T ss_conf 9-724599999999999988 |
|
| >PRK00390 leuS leucyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.8e-20 Score=161.41 Aligned_cols=124 Identities=18% Similarity=0.086 Sum_probs=86.9 Q ss_pred EEEEEE-EC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHH Q ss_conf 479996-16-7888844411127999999999999970799845799605523388899998708986448848999999 Q gi|254780573|r 25 NIRMYV-CG-PTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSK 102 (461) Q Consensus 25 ~v~~Y~-CG-pTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~ 102 (461) T Consensus 31 ~~k~yvld~~PYpsG~lH~GH~~~~ti~Dii~Rykrm~G~~--Vl~p~GwD~~GLPaE~~aik~~~~------p~~~t~~ 102 (822) T PRK00390 31 KPKYYVLDMFPYPSGGLHMGHVRNYTIGDVIARYKRMQGYN--VLHPMGWDAFGLPAENAAIKTGTH------PAEWTYE 102 (822) T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC--CCCCCCCCCCCCHHHHHHHHHCCC------HHHHHHH T ss_conf 99807937799989861132556478999999998718996--389897366886898999994998------8999999 Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHH---HHHHHHHHHHHHHHHCCCCCCCCCCEEECC Q ss_conf 999999987762685410001235---677778999998741143201289287522 Q gi|254780573|r 103 NTQQFVKDTTRLACLAPTHQPRAT---NHIPQMIYLIQNIILHGHAYEANNEIIFDT 156 (461) Q Consensus 103 ~~~~f~~d~~~L~v~~p~~~pr~t---~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv 156 (461) T Consensus 103 nI~~~k~q~k~lG~~~DW~r~~~T~dp~y~~~~qw~F~~l~ekGliyr~~~~V~Wcp 159 (822) T PRK00390 103 NIANMKKQLKSLGFSYDWSREIATCDPEYYKWTQWLFLKLYEKGLAYRKESPVNWCP 159 (822) T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCEEEECCC T ss_conf 999999999983954306898775787799999999999998899795232420079 |
|
| >PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.2e-18 Score=149.77 Aligned_cols=124 Identities=15% Similarity=0.112 Sum_probs=85.6 Q ss_pred ECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCH-------HHHHHHH Q ss_conf 167888844411127999999999999970799845799605523388899998708986448848-------9999999 Q gi|254780573|r 31 CGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAI-------SIITSKN 103 (461) Q Consensus 31 CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~-------~~~a~~~ 103 (461) T Consensus 56 gPPyanG~lH~GHaln~tlkDii~Rykrm~G~~--v~~~pGwD~hGLPiE~~v~k~~g~~~~~~~~~~f~~~cr~~a~~~ 133 (910) T PRK05743 56 GPPYANGDIHIGHALNKILKDIIVKSKTMSGFD--APYVPGWDCHGLPIELKVEKKLGKKRKKLSAAEFRKKCREYALEQ 133 (910) T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC--CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 999989864244778789999999998758996--799996586869999999996199813199999999999999999 Q ss_pred HHHHHHHHHHHCCCCCCHHHHHH---HHHHHHHHHHHHHHHCCCCCCCCCCEEECC Q ss_conf 99999987762685410001235---677778999998741143201289287522 Q gi|254780573|r 104 TQQFVKDTTRLACLAPTHQPRAT---NHIPQMIYLIQNIILHGHAYEANNEIIFDT 156 (461) Q Consensus 104 ~~~f~~d~~~L~v~~p~~~pr~t---~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv 156 (461) T Consensus 134 i~~~~~q~~rlG~~~DW~~~y~T~d~~y~~~~~~~F~~l~ekGliYr~~kpV~Wcp 189 (910) T PRK05743 134 VDIQREDFKRLGVLGDWDNPYLTMDFEYEANIIRVLGKMAKKGYLYKGLKPVYWSP 189 (910) T ss_pred HHHHHHHHHHHCEEEECCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCCCCEECC T ss_conf 99999999971902645897266898899999999999998699685782320489 |
|
| >PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-13 Score=118.27 Aligned_cols=126 Identities=14% Similarity=0.107 Sum_probs=83.5 Q ss_pred EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHC-CCCC----------CCCCC Q ss_conf 999616788884441112799999999999997079984579960552338889999870-8986----------44884 Q gi|254780573|r 27 RMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQE-HPSI----------PINDA 95 (461) Q Consensus 27 ~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~-~~~~----------~~~~~ 95 (461) T Consensus 38 ~~~dgPPy~nG~lHiGH~~~~tikDii~Ry~rm~G~~--V~~~~GwD~hGLPiE~~vek~lgi~~k~~i~~~gi~~F~~~ 115 (1042) T PRK06039 38 VFYDGPPFANGLPHYGHLLTRTIKDVVPRYKTMKGYK--VERRAGWDTHGLPVELEVEKELGISGKKDIEKYGIEKFNEE 115 (1042) T ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC--CCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHCCHHHHHHH T ss_conf 9967899878872143668789999999998738996--68989748677899999999847667642655289999999 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEE Q ss_conf 899999999999998776268541---00012356777789999987411432012892875 Q gi|254780573|r 96 ISIITSKNTQQFVKDTTRLACLAP---THQPRATNHIPQMIYLIQNIILHGHAYEANNEIIF 154 (461) Q Consensus 96 ~~~~a~~~~~~f~~d~~~L~v~~p---~~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~VyF 154 (461) T Consensus 116 cr~~~~~~~~~~~~~~~rlG~~~Dw~~~y~T~d~~y~e~v~~~F~~L~ekGliYrg~~~V~w 177 (1042) T PRK06039 116 CRESVLRYTDEWEEYTERLGRWVDFDNPYKTMDNSYMESVWWALKQLYDKGLLYEGYRVVPY 177 (1042) T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHHHHHHHCCCEEECCCEECC T ss_conf 99999999999999999818205268982768988999999999999987998962713254 |
|
| >TIGR00396 leuS_bact leucyl-tRNA synthetase; InterPro: IPR002302 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.2e-10 Score=94.53 Aligned_cols=123 Identities=16% Similarity=0.132 Sum_probs=87.7 Q ss_pred CCEEEEEEEC--CCCCCC-CCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHH Q ss_conf 9847999616--788884-4411127999999999999970799845799605523388899998708986448848999 Q gi|254780573|r 23 PSNIRMYVCG--PTVYDF-AHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISII 99 (461) Q Consensus 23 ~~~v~~Y~CG--pTvy~~-~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~ 99 (461) T Consensus 28 ~~~~K~YiL~MFPYPSG~GLH~GHvR~YTItDvl~Ry~r~~Gyn--VLHP~GwDAFGLPAEnaAI~~~~~------P~~W 99 (916) T TIGR00396 28 SNKPKYYILSMFPYPSGAGLHMGHVRNYTITDVLSRYKRMKGYN--VLHPMGWDAFGLPAENAAIKRGIH------PAKW 99 (916) T ss_pred CCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--CCCCCCCCCCCCCHHHHHHHCCCC------CHHH T ss_conf 55786466237879560775016514235764999999862883--247667574564258999864898------7003 Q ss_pred HHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHHH----HHHHHHCCCCCCCCCCEEEC Q ss_conf 99999999998776268541-0001235677778999----99874114320128928752 Q gi|254780573|r 100 TSKNTQQFVKDTTRLACLAP-THQPRATNHIPQMIYL----IQNIILHGHAYEANNEIIFD 155 (461) Q Consensus 100 a~~~~~~f~~d~~~L~v~~p-~~~pr~t~~i~~~i~~----i~~L~~~g~aY~~~g~VyFd 155 (461) T Consensus 100 T~~NI~~m~~Ql~~LGf~yDw~RE~~T~~--P~YYkwtQWiF~~Lf~kGLaY~ke~~VNWC 158 (916) T TIGR00396 100 TYENIANMKKQLQALGFSYDWDREIATCD--PEYYKWTQWIFLELFEKGLAYVKEATVNWC 158 (916) T ss_pred HHHHHHHHHHHHHHHCCCCCHHCCCCCCC--CCCCHHHHHHHHHHHHCCCEEEEEEEEEEC T ss_conf 78999999999998455644110532388--874336668889997628527631113306 |
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Leucyl tRNA synthetase (6.1.1.4 from EC) is an alpha monomer that belongs to class Ia. There are two different families of leucyl-tRNA synthetases. This family includes the eubacterial and mitochondrial synthetases. The crystal structure of leucyl-tRNA synthetase from the hyperthermophile Thermus thermophilus has an overall architecture that is similar to that of isoleucyl-tRNA synthetase, except that the putative editing domain is inserted at a different position in the primary structure. This feature is unique to prokaryote-like leucyl-tRNA synthetases, as is the presence of a novel additional flexibly inserted domain . ; GO: 0000166 nucleotide binding, 0004823 leucine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006429 leucyl-tRNA aminoacylation, 0005737 cytoplasm. |
| >COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.4e-07 Score=74.48 Aligned_cols=132 Identities=16% Similarity=0.082 Sum_probs=96.4 Q ss_pred EEEEECCC-CE-EEEEEECCCCC--CCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCC Q ss_conf 22330479-84-79996167888--8444111279999999999999707998457996055233888999987089864 Q gi|254780573|r 16 TEFQAIDP-SN-IRMYVCGPTVY--DFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIP 91 (461) Q Consensus 16 ~~f~p~~~-~~-v~~Y~CGpTvy--~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~ 91 (461) T Consensus 22 ~~Fe~~~d~~~~~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyN--VL~PMGwdafGlPae~~A~~~~~--- 96 (814) T COG0495 22 KVFEADEDSDKPEKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYN--VLHPMGWDAFGLPAENAAIKIGT--- 96 (814) T ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCE--ECCCCCCCCCCCHHHHHHHHHCC--- T ss_conf 9710689888777559986787888873468541210899999999856972--14567556668639999998578--- Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCH-HHHHHH--HHHHHHHHHHHHHHCCCCCCCCCCEEEC Q ss_conf 488489999999999999877626854100-012356--7777899999874114320128928752 Q gi|254780573|r 92 INDAISIITSKNTQQFVKDTTRLACLAPTH-QPRATN--HIPQMIYLIQNIILHGHAYEANNEIIFD 155 (461) Q Consensus 92 ~~~~~~~~a~~~~~~f~~d~~~L~v~~p~~-~pr~t~--~i~~~i~~i~~L~~~g~aY~~~g~VyFd 155 (461) T Consensus 97 ---~P~~wt~~ni~~~k~qlk~lG~siDW~Ref~T~Dp~Yyk~~QW~F~kL~ekGL~y~~~~~Vnwc 160 (814) T COG0495 97 ---DPAKWTYYNIAYMKKQLKSLGFSIDWRREFATCDPEYYKWIQWQFLKLYEKGLAYRKEAPVNWC 160 (814) T ss_pred ---CHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHHHHHHCCCEEECCCCCEEC T ss_conf ---9699999999999999998087612355456479647799999999999779888525543107 |
|
| >PRK12300 leuS leucyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.5e-05 Score=60.00 Aligned_cols=116 Identities=12% Similarity=0.056 Sum_probs=75.0 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHH---------------CCCCC---CCCCCHHHHH Q ss_conf 44111279999999999999707998457996055233888999987---------------08986---4488489999 Q gi|254780573|r 39 AHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQ---------------EHPSI---PINDAISIIT 100 (461) Q Consensus 39 ~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~---------------~~~~~---~~~~~~~~~a 100 (461) T Consensus 1 LH~GH~~~~ti~DiiaRykrM~G~~--Vl~p~GwD~~GlPi~~~ae~~~~~~~~~~~~~~~~~~~~~~~i~k~~~~~~~~ 78 (888) T PRK12300 1 LHIGHGRTYTIGDIYARYKRMKGYN--VLFPMGFHVTGTPILGIAERIAEGDPETIDIYRNLYGIPEEEIEKFKDPEYIV 78 (888) T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCC--CCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH T ss_conf 9405547879999999999807997--79999888899538999999860444689998775136688888750099999 Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHH---HHHHHHHHHHHHHHHCCCCCCCCCCEEECC Q ss_conf 99999999987762685410001235---677778999998741143201289287522 Q gi|254780573|r 101 SKNTQQFVKDTTRLACLAPTHQPRAT---NHIPQMIYLIQNIILHGHAYEANNEIIFDT 156 (461) Q Consensus 101 ~~~~~~f~~d~~~L~v~~p~~~pr~t---~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv 156 (461) T Consensus 79 ~~~~~~~~~q~~rlG~s~DW~re~~T~dp~y~~~v~w~F~kL~ekGliyrg~~~V~WcP 137 (888) T PRK12300 79 EYFSKEAKEAMKRIGYSIDWRREFTTTDPEYSKFIEWQFRKLKEKGLIVKGSHPVGWCP 137 (888) T ss_pred HHHHHHHHHHHHHHCCEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCEEECCCC T ss_conf 99999999999983860636998664888799999999999997799497877867259 |
|
| >KOG0435 consensus | Back alignment and domain information |
|---|
Probab=98.06 E-value=5.1e-06 Score=63.38 Aligned_cols=114 Identities=20% Similarity=0.163 Sum_probs=88.6 Q ss_pred EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH Q ss_conf 99961678888444111279999999999999707998457996055233888999987089864488489999999999 Q gi|254780573|r 27 RMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQ 106 (461) Q Consensus 27 ~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~~~~ 106 (461) T Consensus 60 YiLsMFPYPSG~LHiGHvRVYTIsD~laRf~rm~Gyn--VihPMGWDaFGLPAENAAiergv~------P~sWT~~NI~~ 131 (876) T KOG0435 60 YILSMFPYPSGALHIGHVRVYTISDILARFYRMKGYN--VIHPMGWDAFGLPAENAAIERGVH------PASWTINNIAK 131 (876) T ss_pred EEEEECCCCCCCCCCCCEEEEEEHHHHHHHHHHCCCE--EECCCCCCCCCCCHHHHHHHCCCC------CHHHHHHHHHH T ss_conf 6997367888761126427997258899999854864--215776303488356678754889------20546989999 Q ss_pred HHHHHHHHCCCC----------CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEC Q ss_conf 999877626854----------1000123567777899999874114320128928752 Q gi|254780573|r 107 FVKDTTRLACLA----------PTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFD 155 (461) Q Consensus 107 f~~d~~~L~v~~----------p~~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFd 155 (461) T Consensus 132 Mk~Ql~~lg~~FDWdrEiSTC~PdYY-KWTQwi------FlkLfe~GLAYq~Ea~VNWD 183 (876) T KOG0435 132 MKQQLKSLGISFDWDREISTCEPDYY-KWTQWI------FLKLFEKGLAYQAEAEVNWD 183 (876) T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCHH-HHHHHH------HHHHHHHHHHHCCCCCCCCC T ss_conf 99999973760124553234783156-789999------99999711221113536657 |
|
| >COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0022 Score=44.55 Aligned_cols=124 Identities=15% Similarity=0.172 Sum_probs=89.5 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC-----CHHHHHHHHH-----CCCC-CCCCCCHHHHH Q ss_conf 67888844411127999999999999970799845799605523-----3888999987-----0898-64488489999 Q gi|254780573|r 32 GPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDI-----DDKIIERARQ-----EHPS-IPINDAISIIT 100 (461) Q Consensus 32 GpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDi-----dDkii~~a~~-----~~~~-~~~~~~~~~~a 100 (461) T Consensus 57 PPyANG~iHiGHalnKilKDiI~Ry~~m~G~~--v~~~pG-WDcHGLPIE~~vek~lg~~k~~i~~~~~~efr~~Cr~~a 133 (933) T COG0060 57 PPYANGNIHIGHALNKILKDIIVRYKTMQGYD--VPYVPG-WDCHGLPIELKVEKKLGIGKKDIESFGVEEFREKCREFA 133 (933) T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC--CCCCCC-CCCCCCHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHH T ss_conf 99778982265667766666343332045885--898899-767882288999998287631143348999999999999 Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHH---HHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHH Q ss_conf 9999999998776268541000123---567777899999874114320128928752200 Q gi|254780573|r 101 SKNTQQFVKDTTRLACLAPTHQPRA---TNHIPQMIYLIQNIILHGHAYEANNEIIFDTSS 158 (461) Q Consensus 101 ~~~~~~f~~d~~~L~v~~p~~~pr~---t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~ 158 (461) T Consensus 134 ~~~v~~q~~~f~RLGv~~Dw~npY~Tmd~~ye~~~~~~f~~~~~kGllyrg~Kpv~wsp~c 194 (933) T COG0060 134 LEQVDEQKEQFKRLGVWGDWENPYKTMDPSYEESVWWAFKELYEKGLLYRGYKPVPWSPRC 194 (933) T ss_pred HHHHHHHHHHHHHHEEEECCCCCEECCCHHHHHHHHHHHHHHHHCCCEECCCEEEEECCCC T ss_conf 9999999999876367632689803278899999999999999779752277001226877 |
|
| >KOG1247 consensus | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.012 Score=39.34 Aligned_cols=124 Identities=15% Similarity=0.119 Sum_probs=86.6 Q ss_pred EEEEEEECCCCCCCCCCCCCH-HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHH Q ss_conf 479996167888844411127-9999999999999707998457996055233888999987089864488489999999 Q gi|254780573|r 25 NIRMYVCGPTVYDFAHIGNAR-PMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKN 103 (461) Q Consensus 25 ~v~~Y~CGpTvy~~~HiG~~r-~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~ 103 (461) T Consensus 15 nilitsalpyvnnvphlgNIIg~vlsAdV~Aryc~~r~~~--~~yicGTDEYgtatetkaleeg~t------P~elcdKy 86 (567) T KOG1247 15 NILITSALPYVNNVPHLGNIIGSVLSADVFARYCPLRGPN--TLYICGTDEYGTATETKALEEGLT------PQELCDKY 86 (567) T ss_pred CEEEECCCCEECCCCCCCCEEEEEEEHHHHCCCCCCCCCC--EEEECCCCCCCHHHHHHHHHCCCC------HHHHHHHC T ss_conf 6335125320216653366466776442301236677874--478515665404667999875698------78988722 Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHH-HHHHHHH-HHHHHHHCCCCCCCC-CCEEECCH Q ss_conf 999999877626854100012356-7777899-999874114320128-92875220 Q gi|254780573|r 104 TQQFVKDTTRLACLAPTHQPRATN-HIPQMIY-LIQNIILHGHAYEAN-NEIIFDTS 157 (461) Q Consensus 104 ~~~f~~d~~~L~v~~p~~~pr~t~-~i~~~i~-~i~~L~~~g~aY~~~-g~VyFdv~ 157 (461) T Consensus 87 h~ihk~vy~Wf~IdfD~-fgrtTT~~qT~i~Q~iF~kl~~ng~~se~tv~qLyC~vc 142 (567) T KOG1247 87 HGIHKVVYDWFKIDFDE-FGRTTTKTQTEICQDIFSKLYDNGYLSEQTVKQLYCEVC 142 (567) T ss_pred CHHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHHHHCHHHCCCCCCCEEEEEEEHHH T ss_conf 12678888751566210-376067113277898862521157711000115775211 |
|
| >KOG0433 consensus | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.018 Score=38.05 Aligned_cols=124 Identities=15% Similarity=0.197 Sum_probs=84.5 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCC----CCC-HHHHHHHHHCCC---CCCCCCCHHHHHHHHHHH Q ss_conf 888444111279999999999999707998457996055----233-888999987089---864488489999999999 Q gi|254780573|r 35 VYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNIT----DID-DKIIERARQEHP---SIPINDAISIITSKNTQQ 106 (461) Q Consensus 35 vy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niT----Did-Dkii~~a~~~~~---~~~~~~~~~~~a~~~~~~ 106 (461) T Consensus 66 anG~lhlghAlnKILkdiinr~~l~~g~--~v~yvPGWDCHGLPIEs~Kals~l~~~~~~~spleiR~kAr~fA~~AIk~ 143 (937) T KOG0433 66 ANGNLHLGHALNKILKDIINRILLAQGK--SALYVPGWDCHGLPIESTKALSSLTESEGSRTPLEIRAKARIFADEAIKK 143 (937) T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCC--EECCCCCCCCCCCCHHHHHHHHHCHHHCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 8898016778989999999999997487--44257898768873687787553212114678189999999999999999 Q ss_pred HHHHHHHHCCCCCC---HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHCC Q ss_conf 99987762685410---0012356777789999987411432012892875220024 Q gi|254780573|r 107 FVKDTTRLACLAPT---HQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIP 160 (461) Q Consensus 107 f~~d~~~L~v~~p~---~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~~~ 160 (461) T Consensus 144 Q~e~F~r~gv~aDW~npY~T~~~~yeaaQL~iF~~lyekgLvyR~~KPVyWSpSSRT 200 (937) T KOG0433 144 QMEAFRRWGVTADWENPYVTKSPSYEAAQLDIFAKLYEKGLVYRSFKPVYWSPSSRT 200 (937) T ss_pred HHHHHHHHEEECCCCCCEEECCHHHHHHHHHHHHHHHHCCCEECCCCCCEECCCCHH T ss_conf 999988750110578830623807789999999999866613305776013675312 |
|
| >KOG1148 consensus | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.024 Score=37.15 Aligned_cols=90 Identities=23% Similarity=0.313 Sum_probs=64.0 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 67888844411127999999999999970799845799605523388899998708986448848999999999999987 Q gi|254780573|r 32 GPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDT 111 (461) Q Consensus 32 GpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~~~~f~~d~ 111 (461) T Consensus 254 PPEPNG~LHIGHaKAInv-N--FgyAk~~~G---~cyLRf----DDT--------------N--PEkEee~yf~sI~e~V 307 (764) T KOG1148 254 PPEPNGILHIGHAKAINV-N--FGYAKAHGG---VCYLRF----DDT--------------N--PEKEEEEYFESIKEMV 307 (764) T ss_pred CCCCCCEEEECCHHHEEE-C--HHHHHHHCC---EEEEEC----CCC--------------C--CCHHHHHHHHHHHHHH T ss_conf 989885656321343010-1--244665097---689962----789--------------8--2033689999999999 Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 7626854100012356777789999987411432012 Q gi|254780573|r 112 TRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEA 148 (461) Q Consensus 112 ~~L~v~~p~~~pr~t~~i~~~i~~i~~L~~~g~aY~~ 148 (461) T Consensus 308 ~WLG~~-P~kvTysSDyFdqLy~~av~LIrkG~AYVc 343 (764) T KOG1148 308 AWLGFE-PYKVTYSSDYFDQLYELAVELIRKGKAYVC 343 (764) T ss_pred HHHCCC-CEEEECCHHHHHHHHHHHHHHHHCCCEEEE T ss_conf 871878-504412416799999999999866864677 |
|
| >TIGR00392 ileS isoleucyl-tRNA synthetase; InterPro: IPR002301 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.044 Score=35.26 Aligned_cols=115 Identities=17% Similarity=0.213 Sum_probs=88.1 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEC--------------------CCCCCHHH-HHHHHHCCCCCC Q ss_conf 788884441112799999999999997079984579960--------------------55233888-999987089864 Q gi|254780573|r 33 PTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRN--------------------ITDIDDKI-IERARQEHPSIP 91 (461) Q Consensus 33 pTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~n--------------------iTDidDki-i~~a~~~~~~~~ 91 (461) T Consensus 45 PYAnG~iHlGHalNKilKDii~Ryk~m~G~~--v~~~pGWDtHGLPIE~~Vek~lg~~~~~~~~~~~g~E~fr------- 115 (938) T TIGR00392 45 PYANGAIHLGHALNKILKDIILRYKTMQGYN--VTYKPGWDTHGLPIELKVEKKLGISGKKEIESLEGIEEFR------- 115 (938) T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCEE--CCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHH------- T ss_conf 8767997402556667611232101122500--3204786657870244564047876400022044389999------- Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHH Q ss_conf 488489999999999999877626854100---0123567777899999874114320128928752200 Q gi|254780573|r 92 INDAISIITSKNTQQFVKDTTRLACLAPTH---QPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSS 158 (461) Q Consensus 92 ~~~~~~~~a~~~~~~f~~d~~~L~v~~p~~---~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~ 158 (461) T Consensus 116 --~~Cr~~A~~~~~~q~~~F~rLG~w~Dwe~pY~T~d~~y~~~~w~~l~~~~eKGL~~~~~kpv~WSp~~ 183 (938) T TIGR00392 116 --EKCREFALKQIEEQREQFQRLGVWGDWENPYKTMDPSYEESQWWLLKELHEKGLLYRGLKPVYWSPRC 183 (938) T ss_pred --HHHHHHHHHHHHHHHHHHHHCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCEEECCCCCC T ss_conf --99999999999999988885312022557850678899999999999997524202255221144144 |
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Isoleucyl-tRNA synthetase (6.1.1.5 from EC) is an alpha monomer that belongs to class Ia. The enzyme, isoleucyl-transfer RNA synthetase, activates not only the cognate substrate L-isoleucine but also the minimally distinct L-valine in the first, aminoacylation step. Then, in a second, "editing" step, the synthetase itself rapidly hydrolyzes only the valylated products , as shown from the crystal structures. ; GO: 0000166 nucleotide binding, 0004822 isoleucine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006428 isoleucyl-tRNA aminoacylation, 0005737 cytoplasm. |
| >TIGR00440 glnS glutaminyl-tRNA synthetase; InterPro: IPR004514 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.0047 Score=42.19 Aligned_cols=89 Identities=17% Similarity=0.254 Sum_probs=64.5 Q ss_pred CCCCCCCCCCCCHHHHH-HHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 78888444111279999-99999999970799845799605523388899998708986448848999999999999987 Q gi|254780573|r 33 PTVYDFAHIGNARPMIV-FDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDT 111 (461) Q Consensus 33 pTvy~~~HiG~~r~~v~-~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~~~~f~~d~ 111 (461) T Consensus 7 PEPNGYLHIGHaK~I~~NFG~Ak~---y~G~C~-LRF-------DDT--N--------------P~KE~~EY~eSIK~~V 59 (564) T TIGR00440 7 PEPNGYLHIGHAKSICLNFGLAKE---YKGTCN-LRF-------DDT--N--------------PVKEDVEYVESIKRDV 59 (564) T ss_pred CCCCCCEEHHHHHHHHHHCCCCCC---CCCCEE-EEC-------CCC--C--------------CCCCCCHHHHHHHHHH T ss_conf 557873001024313442032020---176364-421-------678--8--------------8646601788875222 Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 7626854100012356777789999987411432012 Q gi|254780573|r 112 TRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEA 148 (461) Q Consensus 112 ~~L~v~~p~~~pr~t~~i~~~i~~i~~L~~~g~aY~~ 148 (461) T Consensus 60 ~WLGFkw~g~~~YsSDYFD~Ly~~A~~LI~~G~AYV~ 96 (564) T TIGR00440 60 EWLGFKWEGKIRYSSDYFDELYRYAVELIKKGLAYVD 96 (564) T ss_pred HHCCCCCCCCEEECHHHHHHHHHHHHHHHHCCCEEEE T ss_conf 2225124773133304688999999999867960675 |
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Glutaminyl-tRNA synthetase (6.1.1.18 from EC) is a class Ic synthetase and shows several similarities with glutamyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. Glutaminyl-tRNA synthetase is a relatively rare synthetase, found in the cytosolic compartment of eukaryotes, in Escherichia coli and a number of other Gram-negative bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln.; GO: 0000166 nucleotide binding, 0004819 glutamine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006425 glutaminyl-tRNA aminoacylation, 0005737 cytoplasm. |
| >PRK12285 tryptophanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.38 Score=28.59 Aligned_cols=92 Identities=15% Similarity=0.145 Sum_probs=57.4 Q ss_pred CEEEEEE-ECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHH Q ss_conf 8479996-167888844411127999999999999970799845799605523388899998708986448848999999 Q gi|254780573|r 24 SNIRMYV-CGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSK 102 (461) Q Consensus 24 ~~v~~Y~-CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~ 102 (461) T Consensus 65 ~~f~lyTGrgPS--g~mHlGH~ipf~~~----k~lQ~fg----~~l~I~iaD-dEkfl~r----~~t------~ee~~~~ 123 (369) T PRK12285 65 KPFAVYTGRMPS--GKMHIGHKMVFDQL----KWFQEFG----ADVYIQIAD-LEAYSAR----GMS------LEETREI 123 (369) T ss_pred CCEEEEECCCCC--CCCCCCHHHHHHHH----HHHHHCC----CCEEEEECC-HHHHHHC----CCC------HHHHHHH T ss_conf 976999366888--87552015099999----9999879----968999355-7998727----998------9999999 Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHHHHH Q ss_conf 99999998776268541-000123567777899999 Q gi|254780573|r 103 NTQQFVKDTTRLACLAP-THQPRATNHIPQMIYLIQ 137 (461) Q Consensus 103 ~~~~f~~d~~~L~v~~p-~~~pr~t~~i~~~i~~i~ 137 (461) T Consensus 124 a~eenikdiiAlGfdp~kT~i~~~s~~~~-~y~~~~ 158 (369) T PRK12285 124 AIEEYILNYIALGFDPDKTHIYFQSENIK-VYDLAF 158 (369) T ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCHH-HHHHHH T ss_conf 99988888987087800028997576378-999999 |
|
| >PRK12284 tryptophanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.02 Score=37.74 Aligned_cols=83 Identities=17% Similarity=0.104 Sum_probs=47.9 Q ss_pred EECCCCCCCCCCCCCHHHHHHHHHHHHHH---HHCCCCCEEEEE---CCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHH Q ss_conf 61678888444111279999999999999---707998457996---055233888999987089864488489999999 Q gi|254780573|r 30 VCGPTVYDFAHIGNARPMIVFDVLYRLLR---YYYGEKCVTYVR---NITDIDDKIIERARQEHPSIPINDAISIITSKN 103 (461) Q Consensus 30 ~CGpTvy~~~HiG~~r~~v~~D~l~R~L~---~~~~~~~V~~v~---niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~ 103 (461) T Consensus 6 LSGIqPTG~lHLGNY~GAi-----k~~v~~~~q~~~e-~f~fIAD~HALT~~~d------------------p~~l-~~~ 60 (436) T PRK12284 6 LTGITTTGTPHLGNYVGAI-----RPAIAASRQPGVE-SFYFLADYHALIKCDD------------------PARI-QRS 60 (436) T ss_pred CCCCCCCCCCHHHHHHHHH-----HHHHHHHHCCCCC-EEEEEECCCCCCCCCC------------------HHHH-HHH T ss_conf 4574889975288899999-----9999986389986-6999964000568899------------------9999-999 Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 9999998776268541000123567777899999 Q gi|254780573|r 104 TQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQ 137 (461) Q Consensus 104 ~~~f~~d~~~L~v~~p~~~pr~t~~i~~~i~~i~ 137 (461) T Consensus 61 t~eiaa~~LA~GlDPekst~f~QS~VPE~~EL~w 94 (436) T PRK12284 61 TLEIAATWLAAGLDPERVTFYRQSDIPEIPELTW 94 (436) T ss_pred HHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHH T ss_conf 9999999998586802225887888779999999 |
|
| >KOG1195 consensus | Back alignment and domain information |
|---|
Probab=91.24 E-value=1.4 Score=24.58 Aligned_cols=136 Identities=17% Similarity=0.180 Sum_probs=84.2 Q ss_pred CCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC---------------CHHH-------- Q ss_conf 98479996167888844411127999999999999970799845799605523---------------3888-------- Q gi|254780573|r 23 PSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDI---------------DDKI-------- 79 (461) Q Consensus 23 ~~~v~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDi---------------dDki-------- 79 (461) T Consensus 109 ~k~iVVefSSPNIAK~FHvGhLRsTiiG~flanl~e~~G~~--Vtr~NYLGDWGkQFgll~~g~~~~g~e~~L~~~pI~h 186 (567) T KOG1195 109 GKKIVVEFSSPNIAKPFHVGHLRSTIIGNFLANLHEALGWE--VTRVNYLGDWGKQFGLLALGFQLYGDEEELQLNPIKH 186 (567) T ss_pred CCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC--EEEHHHHHHHHHHHHHHHCCHHHHCCHHHHCCCHHHH T ss_conf 75699980488766654124113445416765147761871--4302666678887537752677609666543124889 Q ss_pred -------HHHHHHC----------------CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH Q ss_conf -------9999870----------------89864488489999999999999877626854100012356777789999 Q gi|254780573|r 80 -------IERARQE----------------HPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLI 136 (461) Q Consensus 80 -------i~~a~~~----------------~~~~~~~~~~~~~a~~~~~~f~~d~~~L~v~~p~~~pr~t~~i~~~i~~i 136 (461) T Consensus 187 L~dvYVk~nk~~~~~~~~~~~are~f~rlE~~d~e~~k~Wqrfr~lsIe~l~~~Y~Rl~v~F-D~y~gESqv~~e~~~~~ 265 (567) T KOG1195 187 LFDVYVKINKDAEKDPDTAEEAREFFKRLEDGDEEHLKLWQRFRDLSIEKLIKTYNRLNVKF-DEYSGESQVSNEKMQEA 265 (567) T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCEEE-EECCCHHHHHHHHHHHH T ss_conf 99999985055552946677777899987405499999998745402999999998715110-00332579999999999 Q ss_pred HHHHHCCC-CCCCCCCEEECCHHCCC Q ss_conf 98741143-20128928752200245 Q gi|254780573|r 137 QNIILHGH-AYEANNEIIFDTSSIPN 161 (461) Q Consensus 137 ~~L~~~g~-aY~~~g~VyFdv~~~~~ 161 (461) T Consensus 266 ~d~~rs~~l~~e~dG~~vidL~~~~~ 291 (567) T KOG1195 266 LDLLRSANLTEEIDGTIVIDLSKIDK 291 (567) T ss_pred HHHHHHCCCCCCCCCCEEEEECCCCC T ss_conf 99998549965678858998035676 |
|
| >pfam00133 tRNA-synt_1 tRNA synthetases class I (I, L, M and V) | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.7e-20 Score=165.43 Aligned_cols=86 Identities=27% Similarity=0.345 Sum_probs=77.6 Q ss_pred CEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCHHHEECCCEEE-EEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHH Q ss_conf 4148741356666875136688886408753012100343257-642022332332140899850253345577799999 Q gi|254780573|r 230 VFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLN-LEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIR 308 (461) Q Consensus 230 ~~DIH~GG~DL~FPHHENEiAQs~a~~~~~~~a~yWlH~G~l~-i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR 308 (461) T Consensus 520 PvD~~i~G~D~~r~w~~~~~~~~~~~~~~~Pfk~l~~~-G~vld~~G~KMSKSkGNvv~p~~~i-------~~yGaD~~R 591 (606) T pfam00133 520 PADMLLEGSDQTRGWFYRMIVLGTALTGSAPYKNVLVH-GLVRDEQGRKMSKSLGNVIDPLDVI-------DKYGADALR 591 (606) T ss_pred CCCEEECCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEC-CEEECCCCCCCCCCCCCCCCHHHHH-------HHHCHHHHH T ss_conf 98489776768848999999700002799765458876-6189998878888889978989999-------874929999 Q ss_pred HHHHCCCCCCCCCCC Q ss_conf 998425664321145 Q gi|254780573|r 309 LAMLMTHYREPIDFT 323 (461) Q Consensus 309 ~~lLsshYRspLdfS 323 (461) T Consensus 592 l~~~~a~~~~D~~~S 606 (606) T pfam00133 592 LWLASSDYGRDINFS 606 (606) T ss_pred HHHHCCCCHHCCCCC T ss_conf 999759922046559 |
Other tRNA synthetase sub-families are too dissimilar to be included. |
| >KOG0437 consensus | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.2e-09 Score=84.76 Aligned_cols=95 Identities=29% Similarity=0.280 Sum_probs=67.0 Q ss_pred CCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCHHHEECCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHH Q ss_conf 84148741356666875136688886408753012100343257642022332332140899850253345577799999 Q gi|254780573|r 229 KVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIR 308 (461) Q Consensus 229 ~~~DIH~GG~DL~FPHHENEiAQs~a~~~~~~~a~yWlH~G~l~i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR 308 (461) T Consensus 662 YPiDlrvsGKDLi~NHLtfflynHvAl~~~k~WPkgiraNGHLmLNsEKMSKSTGNfmTL~qaie-------KFgad~tR 734 (1080) T KOG0437 662 YPIDLRVSGKDLIPNHLTFFLYNHVALFPEKKWPKGIRANGHLMLNSEKMSKSTGNFMTLEQAIE-------KFGADGTR 734 (1080) T ss_pred CCEEEEECCCCCCCCCEEEEEEEHHHHCCCCCCCCCCCCCCEEEECCHHCCCCCCCEEEHHHHHH-------HHCCCCEE T ss_conf 30134423421352313675540023154002865311176677331220545677245999898-------73875204 Q ss_pred HHHHCCCCC-CCCCCCHHHHHHH Q ss_conf 998425664-3211450346877 Q gi|254780573|r 309 LAMLMTHYR-EPIDFTVQRLTEA 330 (461) Q Consensus 309 ~~lLsshYR-spLdfS~e~L~~A 330 (461) T Consensus 735 lalAdaGD~veDANF~ea~AnAa 757 (1080) T KOG0437 735 LALADAGDGVEDANFVEANANAA 757 (1080) T ss_pred EEEECCCCCCCCCHHHHHCCCHH T ss_conf 53202268743430666502379 |
|
| >KOG0433 consensus | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.1e-08 Score=79.21 Aligned_cols=88 Identities=19% Similarity=0.183 Sum_probs=72.2 Q ss_pred HHHHCCCCCCHHHEECCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHH Q ss_conf 88640875301210034325764202233233214089985025334557779999999842566432114503468777 Q gi|254780573|r 252 SCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAE 331 (461) Q Consensus 252 s~a~~~~~~~a~yWlH~G~l~i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~lLsshYRspLdfS~e~L~~A~ 331 (461) T Consensus 588 svA~q~kAPYk~vivHGFtlDE~G~KMSKSlGNVidP~~vi~G~~-k~payGaD~LR~WVA~s~~t~d~~iGp~il~qv~ 666 (937) T KOG0433 588 SVAVQNKAPYKKVIVHGFTLDENGNKMSKSLGNVVDPTMVTDGSL-KQPAYGADGLRFWVAGSENTGESKIGPKILDQVD 666 (937) T ss_pred HHHHHCCCCCHHEEEEEEEECCCCCCHHHCCCCCCCHHHHHCCCC-CCCCCCCCCEEEEEECCCCCCCEECCHHHHHHHH T ss_conf 998724687232156203766775421002267578899847756-6887564100134423555575102889999999 Q ss_pred HHHHHCCCC Q ss_conf 643210000 Q gi|254780573|r 332 ILLSKWPQT 340 (461) Q Consensus 332 ~~l~kl~~~ 340 (461) T Consensus 667 e~l~K~R~T 675 (937) T KOG0433 667 EKLIKFRNT 675 (937) T ss_pred HHHHHHHHH T ss_conf 999999757 |
|
| >KOG0434 consensus | Back alignment and domain information |
|---|
Probab=97.34 E-value=8.2e-05 Score=54.77 Aligned_cols=74 Identities=23% Similarity=0.278 Sum_probs=59.2 Q ss_pred HHHHHCCCCCCHHHEECCCEEE-EEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCC--CCCCCCHHHH Q ss_conf 8886408753012100343257-642022332332140899850253345577799999998425664--3211450346 Q gi|254780573|r 251 QSCCADRIEKTANIWIHNGFLN-LEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYR--EPIDFTVQRL 327 (461) Q Consensus 251 Qs~a~~~~~~~a~yWlH~G~l~-i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~lLsshYR--spLdfS~e~L 327 (461) T Consensus 575 lsT~LF~kppfkNv-IvnGlVLAeDG~KMSKrlkNYPdP~~ii-------nkYGADalRlYLInSPVvraE~LkFkeeGV 646 (1070) T KOG0434 575 LSTALFGKPPFKNV-IVNGLVLAEDGKKMSKRLKNYPDPSLII-------NKYGADALRLYLINSPVVRAENLKFKEEGV 646 (1070) T ss_pred HHHHHCCCCCCHHE-EEEEEEEECCCHHHHHHHHCCCCHHHHH-------HHHCCHHEEEEEECCCCCCCCCCCCCHHHH T ss_conf 99987179852221-6701688121077766531598878988-------762620225665158410043344421118 Q ss_pred HHHHH Q ss_conf 87776 Q gi|254780573|r 328 TEAEI 332 (461) Q Consensus 328 ~~A~~ 332 (461) T Consensus 647 revvk 651 (1070) T KOG0434 647 REVVK 651 (1070) T ss_pred HHHHH T ss_conf 99987 |
|
| >cd00805 TyrRS_core Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0007 Score=48.12 Aligned_cols=86 Identities=22% Similarity=0.203 Sum_probs=51.6 Q ss_pred HHHHHHHCCCCEEEEEECCCCCCCCCHH--HHHHHHHHCCCCCCHHHEECCCE-EEEEECCCCCCCCCCCCHHHHHCC-- Q ss_conf 7777875298414874135666687513--66888864087530121003432-576420223323321408998502-- Q gi|254780573|r 220 SAMSSHYLGKVFDIHGGGLDLIFPHHEN--EIAQSCCADRIEKTANIWIHNGF-LNLEGRKMSKSNGNFITINELLET-- 294 (461) Q Consensus 220 sam~~~~lg~~~DIH~GG~DL~FPHHEN--EiAQs~a~~~~~~~a~yWlH~G~-l~i~geKMSKSlGN~iti~dlL~~-- 294 (461) T Consensus 140 vlQAaDil~~~~~~vpvG~DQ~-~hiel~Rdia~r~--n~~~~~~---l~~pll~g~dG~KMSKS~~N~i~i~-l~dsp~ 212 (268) T cd00805 140 LLQAYDFVYLDVDIQLGGSDQR-GNITLGRDLIRRL--GYKKVVG---LTTPLLTGLDGGKMSKSEGNAIWDG-LLDSPY 212 (268) T ss_pred HHHHCCHHHHCCCCEECCHHHH-HHHHHHHHHHHHH--CCCCCEE---EEECEEECCCCCCCCCCCCCCCCCC-CCCCHH T ss_conf 9986018671377146060089-9999999999982--8976145---5311000899874467899950131-215558 Q ss_pred --CCCCCCCCCHHHHHHHHH Q ss_conf --533455777999999984 Q gi|254780573|r 295 --KKFGGRSWPAPVIRLAML 312 (461) Q Consensus 295 --~~~~~k~y~p~viR~~lL 312 (461) T Consensus 213 ~i~~ki~~~~d~~v~~~~~~ 232 (268) T cd00805 213 DFYQKIRNAPDPDVLKFLKL 232 (268) T ss_pred HHHHHEEECCCCCHHHHHHH T ss_conf 88614402886049999999 |
TyrRS is a homodimer, which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding. |
| >cd00802 class_I_aaRS_core Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain | Back alignment and domain information |
|---|
Probab=99.44 E-value=7e-13 Score=112.40 Aligned_cols=137 Identities=28% Similarity=0.271 Sum_probs=106.8 Q ss_pred EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 99616788884441112799999999999997079984579960552338889999870898644884899999999999 Q gi|254780573|r 28 MYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQF 107 (461) Q Consensus 28 ~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~~~~f 107 (461) T Consensus 2 i~~~~p~ptG~lHiGh~~~~~~~~~~ar~~-----~--~~~~~~idd~~~~~~~~a~~~~~~------~~~~~~~~~~~~ 68 (142) T cd00802 2 ITRPGPYPTGPLHIGHARTALLNDVLARYG-----N--VLFILGIDDTGLPIEDKAEKEGKL------PKEEVEENIEEI 68 (142) T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHC-----C--CEEEEEECCCCCCCCCHHHHHCCC------CHHHHHHHHHHH T ss_conf 141488989964188999999999999981-----9--989998657992001167884448------899999999999 Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCC Q ss_conf 99877626854100012356777789999987411432012892875220024543224675466664321022221012 Q gi|254780573|r 108 VKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKN 187 (461) Q Consensus 108 ~~d~~~L~v~~p~~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~~~~YG~Ls~~~~~~~~~g~r~~~~~~K~~ 187 (461) T Consensus 69 ~~~~~---------------------------------y----------------------------------------- 74 (142) T cd00802 69 KEDLK---------------------------------Y----------------------------------------- 74 (142) T ss_pred HHHCE---------------------------------E----------------------------------------- T ss_conf 98652---------------------------------6----------------------------------------- Q ss_pred CCCEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCC---CCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCHHH Q ss_conf 35126663377666314146776676433204777787529---841487413566668751366888864087530121 Q gi|254780573|r 188 PADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLG---KVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANI 264 (461) Q Consensus 188 p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg---~~~DIH~GG~DL~FPHHENEiAQs~a~~~~~~~a~y 264 (461) T Consensus 75 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~G~D~~~-~~~~~~~~~~~l~~~~~-~~~ 124 (142) T cd00802 75 ----------------------------WFDSAADDLLLLGYPFYPVDLVLGGKDQIP-HLELTRDLLKALGGKFP-PPE 124 (142) T ss_pred ----------------------------CCCEEECHHHHCCCCCCCCCEEEECCCCCC-CCHHHHHHHHHHCCCCC-CCC T ss_conf ----------------------------340164348754667887657886621014-76999999998377889-986 Q ss_pred EECCCEEEEEE-CCCCCC Q ss_conf 00343257642-022332 Q gi|254780573|r 265 WIHNGFLNLEG-RKMSKS 281 (461) Q Consensus 265 WlH~G~l~i~g-eKMSKS 281 (461) T Consensus 125 ~~~~~~l~~~~g~KmSKS 142 (142) T cd00802 125 VLHHGLLLGEDGKKMSKS 142 (142) T ss_pred EEEEEEEECCCCCCCCCC T ss_conf 786311488699867899 |
These enzymes are mostly monomers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. |
| >cd00671 ArgRS_core This is the catalytic core domain of Arginyl tRNA synthetase (ArgRS) | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.1e-06 Score=64.93 Aligned_cols=209 Identities=17% Similarity=0.136 Sum_probs=119.0 Q ss_pred EEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC------------------------------ Q ss_conf 79996167888844411127999999999999970799845799605523------------------------------ Q gi|254780573|r 26 IRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDI------------------------------ 75 (461) Q Consensus 26 v~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDi------------------------------ 75 (461) T Consensus 2 I~vEf~S~Np~kplHvGHlR~aiiGdslaril~~~G~~--V~r~~yvnD~G~Qi~~l~~~~~~~~~~~~~~~~~~~~~~~ 79 (267) T cd00671 2 ILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFAGYD--VTREYYINDWGRQIGLLILSLEKRGLELLGEDKELPPDGY 79 (267) T ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCE--EEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCH T ss_conf 59885589999985031036389999999999987995--8898850786099999999999972000344457997303 Q ss_pred -CHHHHHHHH-------------H-----CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH Q ss_conf -388899998-------------7-----089864488489999999999999877626854100012356777789999 Q gi|254780573|r 76 -DDKIIERAR-------------Q-----EHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLI 136 (461) Q Consensus 76 -dDkii~~a~-------------~-----~~~~~~~~~~~~~~a~~~~~~f~~d~~~L~v~~p~~~pr~t~~i~~~i~~i 136 (461) T Consensus 80 ~g~~y~~~~~~~~~~~~~~~~~~~~~~~le~~d~~~~~~~~~~~~~~i~~~~~~~~~l~-~-fD~~~~ES~~~~~~~~v~ 157 (267) T cd00671 80 LGEYYVEIAKRLEEDEEFEERAEELEKKLESGDEETIKLWRKLVLESIKADLETYGVLD-R-FDVWFGESSYLGEMGKVV 157 (267) T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC-C-CCEEECHHHHHCCHHHHH T ss_conf 45789999999885844777768999865438899999999999999999999976666-6-632633887625278999 Q ss_pred HHHHHCCCC-CCCCCCEEECCHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCEEECCCCCCCCCC Q ss_conf 987411432-0128928752200245432246754666643210222210123512666337766631414677667643 Q gi|254780573|r 137 QNIILHGHA-YEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGW 215 (461) Q Consensus 137 ~~L~~~g~a-Y~~~g~VyFdv~~~~~YG~Ls~~~~~~~~~g~r~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGW 215 (461) T Consensus 158 ~~L~~~~~~~~e~dGA~~~~~~~~gd--------------------------~~~~vl~ks--DG~~tY~~~-------- 201 (267) T cd00671 158 ELLEELGLLVYEEDGALWLDLTEFGD--------------------------DKDRVLVKS--DGTYTYFTR-------- 201 (267) T ss_pred HHHHHCCCEEEEECCEEEEECHHCCC--------------------------CCCCEEEEC--CCCCCCCHH-------- T ss_conf 99985578078537809996201178--------------------------877236725--897653457-------- Q ss_pred CCHHHHHHHHH--CCC--CEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCHH-HEECCCEEEE-EECCCCC Q ss_conf 32047777875--298--4148741356666875136688886408753012-1003432576-4202233 Q gi|254780573|r 216 HIECSAMSSHY--LGK--VFDIHGGGLDLIFPHHENEIAQSCCADRIEKTAN-IWIHNGFLNL-EGRKMSK 280 (461) Q Consensus 216 HiECsam~~~~--lg~--~~DIH~GG~DL~FPHHENEiAQs~a~~~~~~~a~-yWlH~G~l~i-~geKMSK 280 (461) T Consensus 202 --DiAy~~~K~~~~~~D~~I~V~g~dq~~hf~---~v~~~l~~lg~-~~~~~l~h~~~g~V~l~~~~kmSt 266 (267) T cd00671 202 --DIAYHLDKFEERGADKIIYVVGADHHGHFK---RLFAALELLGY-PEAKKLEHILYGMVNLPDEGKMST 266 (267) T ss_pred --HHHHHHHHHHCCCCCEEEEEECCCHHHHHH---HHHHHHHHCCC-CCCCCEEEEEEEEEECCCCCCCCC T ss_conf --999999999758989899997987799999---99999997599-988875999854699899998889 |
This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The other subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine. |
| >PRK13354 tyrosyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0043 Score=42.47 Aligned_cols=193 Identities=18% Similarity=0.150 Sum_probs=90.4 Q ss_pred CEEEEEEECCCC-CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCC-CCHHHHHHHHHCCCCCCCCCCHHHHHH Q ss_conf 847999616788-884441112799999999999997079984579960552-338889999870898644884899999 Q gi|254780573|r 24 SNIRMYVCGPTV-YDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITD-IDDKIIERARQEHPSIPINDAISIITS 101 (461) Q Consensus 24 ~~v~~Y~CGpTv-y~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTD-idDkii~~a~~~~~~~~~~~~~~~~a~ 101 (461) T Consensus 36 ~~l~vy-~GfDPTa~sLHlGhlv~l~~---L~~fq-~~Gh~~-i~liGg~T~~IGDPSgk~~~R~~-------------- 95 (405) T PRK13354 36 KPLTLK-LGLDPTAPDIHIGHLVVLRK---LKQFQ-DAGHRA-VILIGDFTGKIGDPTGKSKERKL-------------- 95 (405) T ss_pred CCEEEE-EEECCCCCCCHHHHHHHHHH---HHHHH-HCCCCE-EEEECCCCCCCCCCCCCCCCCCC-------------- T ss_conf 843899-95469988520764999999---99999-869947-99967865425699998545667-------------- Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECC---HHCCCCCCCCCCCHHHHHHHHH Q ss_conf 9999999987762685410001235677778999998741143201289287522---0024543224675466664321 Q gi|254780573|r 102 KNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDT---SSIPNYGSFSRRKIDEQKMGTR 178 (461) Q Consensus 102 ~~~~~f~~d~~~L~v~~p~~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv---~~~~~YG~Ls~~~~~~~~~g~r 178 (461) T Consensus 96 ------------------l~~e~i~~N~~~~~~q~~~~ld~~~~~iv~N~~W~~~~~~~dfl~~g~~--~~v~~mL~rd~ 155 (405) T PRK13354 96 ------------------LTDEQVQHNADTYTEQIFKLLDKEKTEMVNNSDWLSKLNFIDVIDLGKK--FTVARMLERDD 155 (405) T ss_pred ------------------CCHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHCCCCHHHHHHHHHH--CCHHHHHHHHH T ss_conf ------------------6799999999999999998636655178656876647445689998612--72999884789 Q ss_pred CCCCCCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHH-----HCCCCEEEEEECCCCCCCCCHHHHHH-- Q ss_conf 02222101235126663377666314146776676433204777787-----52984148741356666875136688-- Q gi|254780573|r 179 VPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSH-----YLGKVFDIHGGGLDLIFPHHENEIAQ-- 251 (461) Q Consensus 179 ~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~-----~lg~~~DIH~GG~DL~FPHHENEiAQ-- 251 (461) T Consensus 156 v~~Rl~~~~~is~-------------------------~EF~Y~llQayD~~~L--~~~iqiGGsDQ~g----Ni~~G~d 204 (405) T PRK13354 156 FKKRLESDQGISF-------------------------HEFFYPLLQAYDSVHL--DADIELGGTDQWF----NILMGRD 204 (405) T ss_pred HHHHHHCCCCCEE-------------------------EEHHHHHHHHHHHHHH--CCCEEEECHHHHH----HHHHHHH T ss_conf 9999847999368-------------------------5146788888649986--8837995086888----9997999 Q ss_pred -HHHHCCCCCCHHHEECCCE-EEEEE-CCCCCCCCCCCCHHH Q ss_conf -8864087530121003432-57642-022332332140899 Q gi|254780573|r 252 -SCCADRIEKTANIWIHNGF-LNLEG-RKMSKSNGNFITINE 290 (461) Q Consensus 252 -s~a~~~~~~~a~yWlH~G~-l~i~g-eKMSKSlGN~iti~d 290 (461) T Consensus 205 L~r~~~~~~~---~~lT~PLL~~~dG~~KmgKS~gnaIwLd~ 243 (405) T PRK13354 205 LQRKLGEEKQ---VGITMPLLEGLDGTEKMSKSLGNYIGLDE 243 (405) T ss_pred HHHHHCCCCC---EEEEECCEECCCCCCCCCCCCCCCEECCC T ss_conf 9998578983---59960615788775532501278631479 |
|
| >COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.02 Score=37.70 Aligned_cols=192 Identities=22% Similarity=0.154 Sum_probs=101.9 Q ss_pred EECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC-CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 616788884441112799999999999997079-9845799605523388899998708986448848999999999999 Q gi|254780573|r 30 VCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG-EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFV 108 (461) Q Consensus 30 ~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~-~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~~~~f~ 108 (461) T Consensus 9 lSG~~PSG~lHLGny~ga~---~~~v~~q-~~~~~--~--f~~IaDlha-~t~~----------~~~~~~~l~~~~~e~~ 69 (314) T COG0180 9 LSGIQPSGKLHLGNYLGAI---RNWVLLQ-EEYYE--C--FFFIADLHA-ITVR----------QDPTEEDLRQATREVA 69 (314) T ss_pred EECCCCCCCCCHHHHHHHH---HHHHHHH-CCCCC--E--EEEEECHHH-HHCC----------CCCHHHHHHHHHHHHH T ss_conf 7567889975215769999---9999985-35575--4--999962777-5548----------8876999999999999 Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCC Q ss_conf 98776268541000123567777899999874114320128928752200245432246754666643210222210123 Q gi|254780573|r 109 KDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNP 188 (461) Q Consensus 109 ~d~~~L~v~~p~~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~~~~YG~Ls~~~~~~~~~g~r~~~~~~K~~p 188 (461) T Consensus 70 a~~LA~GiDP~k~~if~QS~v~e~~eLa~~l~-----------------~~~~~gel~r~~--------~fKdk~~~~~- 123 (314) T COG0180 70 ADYLAVGLDPEKSTIFLQSEVPEHAELAWLLS-----------------CVTNFGELERMT--------QFKDKSAKKG- 123 (314) T ss_pred HHHHHHCCCCCCCEEEECCCCHHHHHHHHHHH-----------------CCCCHHHHHHHC--------CCCHHHHCCC- T ss_conf 99987046856027998068667999999998-----------------617599998523--------7643332343- Q ss_pred CCEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCH--HHHHHHHHHC----CCCCCH Q ss_conf 5126663377666314146776676433204777787529841487413566668751--3668888640----875301 Q gi|254780573|r 189 ADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHE--NEIAQSCCAD----RIEKTA 262 (461) Q Consensus 189 ~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~FPHHE--NEiAQs~a~~----~~~~~a 262 (461) T Consensus 124 --~----~~~~Gl~~Y--------P------vlqAADILl~~a~~VPVG~DQ~-qHleLtRDiA~rfn~~y~~~f~~P~~ 182 (314) T COG0180 124 --E----SIPIGLLTY--------P------VLQAADILLYQATLVPVGEDQD-QHLELTRDIARRFNHLYGEVFPLPEA 182 (314) T ss_pred --C----CCCCCCHHC--------C------HHHHHHHHHCCCCEECCCCCCH-HHHHHHHHHHHHHHHHCCCCCCCCCC T ss_conf --5----664102105--------4------9988876502687510488853-99999999999987446675378600 Q ss_pred HHEECC--CEEEEEE-CCCCCCCCC-CCCHH Q ss_conf 210034--3257642-022332332-14089 Q gi|254780573|r 263 NIWIHN--GFLNLEG-RKMSKSNGN-FITIN 289 (461) Q Consensus 263 ~yWlH~--G~l~i~g-eKMSKSlGN-~iti~ 289 (461) T Consensus 183 --~~~~~~~i~gL~g~~KMSkS~~ns~I~L~ 211 (314) T COG0180 183 --LISKVARLPGLDGPGKMSKSDPNSAIFLL 211 (314) T ss_pred --CCCCCCCCCCCCCCCCCCCCCCCCEEECC T ss_conf --14477746478999866666999824504 |
|
| >cd02156 nt_trans nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0016 Score=45.48 Aligned_cols=146 Identities=19% Similarity=0.163 Sum_probs=79.3 Q ss_pred EECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 61678888444111279999999999999707998457996055233888999987089864488489999999999999 Q gi|254780573|r 30 VCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVK 109 (461) Q Consensus 30 ~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~~~~f~~ 109 (461) T Consensus 1 ~~~~g~fd~~H~GH~~l~~~~~~~~~----~~----~~~~~~~~~~~~~~~~~~~~----------~~~~~~~r~~~~~~ 62 (147) T cd02156 1 VLAPGPFDPLHLGHLRLIERADELAR----YG----GDELIVIDDTDPPIKKLKGK----------PLESLEERLEMLRE 62 (147) T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHH----HC----CCCEEEEECCCCCHHHCCCC----------CCCCHHHHHHHHHH T ss_conf 98986048767899999999999999----76----99289997899914533787----------67689999999998 Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCC Q ss_conf 87762685410001235677778999998741143201289287522002454322467546666432102222101235 Q gi|254780573|r 110 DTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPA 189 (461) Q Consensus 110 d~~~L~v~~p~~~pr~t~~i~~~i~~i~~L~~~g~aY~~~g~VyFdv~~~~~YG~Ls~~~~~~~~~g~r~~~~~~K~~p~ 189 (461) T Consensus 63 ~~~~~~~~~~~~-------------------------------------------------------------------- 74 (147) T cd02156 63 ALKDLGVVLDFD-------------------------------------------------------------------- 74 (147) T ss_pred HCCCEEEEEECC-------------------------------------------------------------------- T ss_conf 288814998577-------------------------------------------------------------------- Q ss_pred CEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCHHH-HHHHHHHCCCCCCHHHEECC Q ss_conf 12666337766631414677667643320477778752984148741356666875136-68888640875301210034 Q gi|254780573|r 190 DFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENE-IAQSCCADRIEKTANIWIHN 268 (461) Q Consensus 190 DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~FPHHENE-iAQs~a~~~~~~~a~yWlH~ 268 (461) T Consensus 75 ----------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~G~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 134 (147) T cd02156 75 ----------------LEREDGVPDYTFDFVKDLLALL-LPVDVVVVGKDQLFGFEREGALLLLELLKG---PEVVVVPR 134 (147) T ss_pred ----------------HHHHHCCCCCHHHHHHHHHHHC-CCCCEEEECCCCCCCCCCCCCHHHHHHHCC---CCEEEECC T ss_conf ----------------8886337666799999999844-699889988698789999869999997359---98899571 Q ss_pred CEEEEEECCCCCC Q ss_conf 3257642022332 Q gi|254780573|r 269 GFLNLEGRKMSKS 281 (461) Q Consensus 269 G~l~i~geKMSKS 281 (461) T Consensus 135 ~~~~~~~~~sSt~ 147 (147) T cd02156 135 GLLDEGGGKSSTS 147 (147) T ss_pred HHCCCCCEECCCC T ss_conf 1026787761789 |
|
| >PRK05912 tyrosyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.079 Score=33.44 Aligned_cols=199 Identities=20% Similarity=0.245 Sum_probs=87.5 Q ss_pred CCCEEEEEE-ECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCC-CCHHHHHHHHHCCCCCCCCCCHHHH Q ss_conf 798479996-16788884441112799999999999997079984579960552-3388899998708986448848999 Q gi|254780573|r 22 DPSNIRMYV-CGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITD-IDDKIIERARQEHPSIPINDAISII 99 (461) Q Consensus 22 ~~~~v~~Y~-CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTD-idDkii~~a~~~~~~~~~~~~~~~~ 99 (461) T Consensus 29 ~~~~~~~y~G~DPT-a~sLH~Ghlv~l~---~L~~fq-~~Gh~~-i~lvGg~T~~IGDPSGk~~~R~~l~------~e~- 95 (402) T PRK05912 29 EGRPLRIKLGFDPT-APDLHLGHLVVLL---KLRRFQ-DLGHKP-IFLIGDFTGMIGDPSGKSATRKLLT------REQ- 95 (402) T ss_pred HCCCEEEEEEECCC-CCCCCHHHHHHHH---HHHHHH-HCCCCE-EEEECCCCEECCCCCCCCCCCCCCC------HHH- T ss_conf 18980799814699-8752065299999---999999-869964-9996775245018999865566889------999- Q ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHC-CCCCCCC-CCEE--ECCHHCCCCCCCCCCCHHHHHH Q ss_conf 9999999999877626854100012356777789999987411-4320128-9287--5220024543224675466664 Q gi|254780573|r 100 TSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILH-GHAYEAN-NEII--FDTSSIPNYGSFSRRKIDEQKM 175 (461) Q Consensus 100 a~~~~~~f~~d~~~L~v~~p~~~pr~t~~i~~~i~~i~~L~~~-g~aY~~~-g~Vy--Fdv~~~~~YG~Ls~~~~~~~~~ 175 (461) T Consensus 96 -------------------------i~~N~~~i~~q~~~~l~~~~~~~i~~N~~W~~~~~~~dflr~g~~--~~v~~Ml~ 148 (402) T PRK05912 96 -------------------------VLENAETYKEQLFKILGDPEKTEIRNNSEWLGKLNAIDFLRLGSH--FTVARMLE 148 (402) T ss_pred -------------------------HHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHCCCCHHHHHHHHHH--CCHHHHHH T ss_conf -------------------------999999999999987189876599712786564428999998613--62999986 Q ss_pred HHHCCCCCCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHH----H Q ss_conf 321022221012351266633776663141467766764332047777875298414874135666687513668----8 Q gi|254780573|r 176 GTRVPEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIA----Q 251 (461) Q Consensus 176 g~r~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~FPHHENEiA----Q 251 (461) T Consensus 149 rd~v~~Rl~~~~gis~~--------E--F~Y~llQayDf~~L~------------~~lqiGGsDQwg----Ni~~G~dLi 202 (402) T PRK05912 149 RDDFKKRYKSEQPISIH--------E--FLYPLLQGYDSVALN------------ADLELGGTDQWF----NILVGRDLQ 202 (402) T ss_pred HHHHHHHHHCCCCEEEE--------E--EHHHHHHHHHHHHHC------------CCEEEECHHHHH----HHHHHHHHH T ss_conf 78999987169972787--------4--137788766577540------------334773054899----999899999 Q ss_pred HHHHCCCCCCHHHEECCCEE-EEEECCC-CCCCCCCCCHHH Q ss_conf 88640875301210034325-7642022-332332140899 Q gi|254780573|r 252 SCCADRIEKTANIWIHNGFL-NLEGRKM-SKSNGNFITINE 290 (461) Q Consensus 252 s~a~~~~~~~a~yWlH~G~l-~i~geKM-SKSlGN~iti~d 290 (461) T Consensus 203 r~-~~~-~~--~~glT~PLLt~~dG~K~gsKS~gnaIwLd~ 239 (402) T PRK05912 203 RR-YGQ-EP--QFGLTMPLLTGLDGVKKMSKSLGNYIWLDE 239 (402) T ss_pred HH-HCC-CC--CEEEEECCEECCCCCCCCCCCCCCCEECCC T ss_conf 98-568-98--379984505778768435667998701789 |
|
| >TIGR00395 leuS_arch leucyl-tRNA synthetase; InterPro: IPR004493 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.2e-13 Score=113.35 Aligned_cols=269 Identities=20% Similarity=0.271 Sum_probs=169.0 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH-HHHHHHCCCC---CC-CCCCEEECCH------HCC-----C Q ss_conf 99999999999987762685410001235677778999-9987411432---01-2892875220------024-----5 Q gi|254780573|r 98 IITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYL-IQNIILHGHA---YE-ANNEIIFDTS------SIP-----N 161 (461) Q Consensus 98 ~~a~~~~~~f~~d~~~L~v~~p~~~pr~t~~i~~~i~~-i~~L~~~g~a---Y~-~~g~VyFdv~------~~~-----~ 161 (461) T Consensus 476 ~L~~Atk~~YK~ey~-~Gvm~~~~~~Y~G~kV~eak~~v~~dL~~~GlA~v~yEFsE~~VicRcG~~CiV~v~~DQWF~~ 554 (1109) T TIGR00395 476 LLEEATKELYKEEYH-TGVMIENILDYKGMKVSEAKEKVKEDLIDKGLADVMYEFSEKPVICRCGTKCIVKVVEDQWFVK 554 (1109) T ss_pred HHHHHHHHHCHHHCC-CEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCEEECCCCCCEEEEECCEEEEE T ss_conf 478874002213215-0032047757886117999999999998537860201657885120267960698851600111 Q ss_pred CCC-----CCCCCHHHHHHHHHCCCCCCCCCCC----CEEEEECCCCCC-CEEECCC----------------------- Q ss_conf 432-----2467546666432102222101235----126663377666-3141467----------------------- Q gi|254780573|r 162 YGS-----FSRRKIDEQKMGTRVPEKYHKKNPA----DFILWKRSTPME-PGWESPW----------------------- 208 (461) Q Consensus 162 YG~-----Ls~~~~~~~~~g~r~~~~~~K~~p~----DFaLWK~~~~~e-~~w~spw----------------------- 208 (461) T Consensus 555 Ys~~~WK~~a~~CLegM~~ip~-~~k~~F~~~idWL~dwAc~Rr~GLGTrlPwde~wliESLsDSTIY~aYYtiA~~l~~ 633 (1109) T TIGR00395 555 YSDESWKELAHECLEGMRIIPE-EVKEAFEEKIDWLKDWACARRKGLGTRLPWDEKWLIESLSDSTIYMAYYTIAKYLNK 633 (1109) T ss_pred CCCHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHH T ss_conf 4515689999987433732768-888888776664236304612467777875675477127623256789999999852 Q ss_pred ---CC--CCCC----------------------CCCHHHHHHHHHCC---------CCEEEEEECCCCCCCCCHHHHHHH Q ss_conf ---76--6764----------------------33204777787529---------841487413566668751366888 Q gi|254780573|r 209 ---GR--GRPG----------------------WHIECSAMSSHYLG---------KVFDIHGGGLDLIFPHHENEIAQS 252 (461) Q Consensus 209 ---G~--GRPG----------------------WHiECsam~~~~lg---------~~~DIH~GG~DL~FPHHENEiAQs 252 (461) T Consensus 634 ~~~g~EiGPlGisaD~mt~E~fDyifl~~gdV~K~Ak~t~ip~~~~~~lR~eF~Y~YPlD~r~SgKDLi~NHLtFyiF~H 713 (1109) T TIGR00395 634 DDLGNEIGPLGISADQMTDEFFDYIFLGKGDVDKVAKNTNIPLELIEKLREEFEYWYPLDWRISGKDLIPNHLTFYIFHH 713 (1109) T ss_pred CCCCCCCCCCCCCHHCCCHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHCCEECCCCCCCCCCCCCHHHHHHHHHHE T ss_conf 14577645554442005744522432388715677654078888998755434100560100243101034677664400 Q ss_pred HHHCCCCCCHHHEECCCEEEEEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHH-CCCCCCCCCCCHHHHHHHH Q ss_conf 864087530121003432576420223323321408998502533455777999999984-2566432114503468777 Q gi|254780573|r 253 CCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAML-MTHYREPIDFTVQRLTEAE 331 (461) Q Consensus 253 ~a~~~~~~~a~yWlH~G~l~i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~lL-sshYRspLdfS~e~L~~A~ 331 (461) T Consensus 714 vAiFP~~~WPrGi~vnG~~~Leg~KmSkSkGn~l~l~~~v-------ekfGADv~Rl~~~~aAe~~~Dad~~~~e~~~~~ 786 (1109) T TIGR00395 714 VAIFPEKFWPRGIVVNGYVLLEGKKMSKSKGNVLTLKEAV-------EKFGADVARLYILDAAELVQDADWKESEVEGTK 786 (1109) T ss_pred EEECCCCCCCCEEEEEEEEEEECCCCCCCCCCCHHHHHHH-------HHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHH T ss_conf 2424879897617997578871734054547622388999-------872761899999731787213561067789999 Q ss_pred HHHHHCCCCCCCC-------------------CCCCHHHHHHC----------CCHHHHHHHH-HHHHHHHHHH Q ss_conf 6432100001351-------------------00596776302----------1101279999-9999999975 Q gi|254780573|r 332 ILLSKWPQTSTSK-------------------GIIDPAVLSAL----------YNDLNTVSAI-QALHKLARES 375 (461) Q Consensus 332 ~~l~kl~~~~~~~-------------------~~~~~~f~~AL----------~DDLNTp~AL-a~L~~lvk~~ 375 (461) T Consensus 787 ~~L~~l~~~a~e~~~~~~GrPvl~e~GPaE~~~f~D~wl~~~l~~~i~~~~e~~~~~~~r~A~~~~Lf~L~~d~ 860 (1109) T TIGR00395 787 KRLERLYEFAEEITKKSDGRPVLLEVGPAEELSFIDRWLLSRLNKAIKEVTEAMENFQTRKAVKAALFDLKADV 860 (1109) T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999985430684011035777631052189999999999999999986667899999999999999 |
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Leucyl tRNA synthetase (6.1.1.4 from EC) is an alpha monomer that belongs to class Ia. There are two different families of leucyl-tRNA synthetases. This family includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases.; GO: 0000166 nucleotide binding, 0004823 leucine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006429 leucyl-tRNA aminoacylation, 0005737 cytoplasm. |
| >pfam09190 DALR_2 DALR domain | Back alignment and domain information |
|---|
Probab=98.35 E-value=5e-07 Score=70.60 Aligned_cols=48 Identities=29% Similarity=0.387 Sum_probs=39.9 Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHCCCH--------HHHHHHHHHHHHCCCCCC Q ss_conf 776302110127999999999999751306--------799999999987176743 Q gi|254780573|r 350 AVLSALYNDLNTVSAIQALHKLARESTKNH--------DLLPIFNASAHILGIEVC 397 (461) Q Consensus 350 ~f~~AL~DDLNTp~ALa~L~~lvk~~n~~~--------~~~~~~~~~~~iLGl~~~ 397 (461) T Consensus 1 ~F~~AMdDDfNTp~Ala~lfel~k~iN~~~~~~~~~~~~~~~~l~~~~~vLGll~~ 56 (62) T pfam09190 1 RFIEAMDDDFNTPEAIAVLFELAKEINRALNEGDEKLAALAATLRALGGVLGLLQQ 56 (62) T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 95777651447599999999999999987054758999999999999977388653 |
This DALR domain is found in cysteinyl-tRNA-synthetases. |
| >smart00840 DALR_2 This DALR domain is found in cysteinyl-tRNA-synthetases | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.2e-06 Score=67.77 Aligned_cols=45 Identities=31% Similarity=0.440 Sum_probs=37.3 Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHHCCC Q ss_conf 77630211012799999999999975130----------6799999999987176 Q gi|254780573|r 350 AVLSALYNDLNTVSAIQALHKLARESTKN----------HDLLPIFNASAHILGI 394 (461) Q Consensus 350 ~f~~AL~DDLNTp~ALa~L~~lvk~~n~~----------~~~~~~~~~~~~iLGl 394 (461) T Consensus 1 ~F~~AMdDDfNTp~Ala~lfel~k~~N~~~~~~~~~~~~~~~~~~l~~~~~vLGl 55 (56) T smart00840 1 RFEEAMDDDFNTPEALAVLFELAREINRLLLKAVDAEELAALAALLRALGGVLGL 55 (56) T ss_pred CHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC T ss_conf 9477754424759999999999999998640379999999999999999856087 |
|
| >TIGR00396 leuS_bact leucyl-tRNA synthetase; InterPro: IPR002302 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=98.19 E-value=5.8e-06 Score=62.97 Aligned_cols=167 Identities=22% Similarity=0.284 Sum_probs=103.8 Q ss_pred CEE-ECCC-------CCCCC-CCCCHHHH---HHHHHCCCCEEEEEECCCCCCCCCHHHHH------HHHHHCC----CC Q ss_conf 314-1467-------76676-43320477---77875298414874135666687513668------8886408----75 Q gi|254780573|r 202 PGW-ESPW-------GRGRP-GWHIECSA---MSSHYLGKVFDIHGGGLDLIFPHHENEIA------QSCCADR----IE 259 (461) Q Consensus 202 ~~w-~spw-------G~GRP-GWHiECsa---m~~~~lg~~~DIH~GG~DL~FPHHENEiA------Qs~a~~~----~~ 259 (461) T Consensus 525 dtf~~SsWYylRY~~p~~n~~FWPi~~~~d~e~~~~wl--PVD~YiGG~EHAiLHLLY~RF~hK~L~D~g~v~~PaGi~E 602 (916) T TIGR00396 525 DTFIGSSWYYLRYLDPKNNTNFWPIDQPFDKEKAEYWL--PVDLYIGGIEHAILHLLYARFFHKFLYDLGLVSTPAGIKE 602 (916) T ss_pred CCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCC--CCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC T ss_conf 30577789998603500176668732130278897558--8441026268998998888999999974576158776657 Q ss_pred CCHHHEECCCEEE--------------------------------------------EEECCCCCCCCCCCCHHHHHCCC Q ss_conf 3012100343257--------------------------------------------64202233233214089985025 Q gi|254780573|r 260 KTANIWIHNGFLN--------------------------------------------LEGRKMSKSNGNFITINELLETK 295 (461) Q Consensus 260 ~~a~yWlH~G~l~--------------------------------------------i~geKMSKSlGN~iti~dlL~~~ 295 (461) T Consensus 603 PFkK-L~~QGMVlg~~f~y~~~~g~~~W~~p~d~~~~~d~~~d~~~~~d~~~~~~~~~~~~KMSKSK~N~i~P~e~~--- 678 (916) T TIGR00396 603 PFKK-LINQGMVLGDAFYYKKPNGKRIWVVPADELIERDEKGDIKKAKDKSGGELVVVGYEKMSKSKGNGIDPQEIV--- 678 (916) T ss_pred HHHH-HHHCCEEECCCEEECCCCCCEEEEECCCCEEECCCCCCCCCCEECCCCCEEEEEEEEECCCCCCCCCCHHHH--- T ss_conf 1455-420000211613413899736776457516610466786542325888247887776202367988703897--- Q ss_pred CCCCCCCCHHHHHHHHH-CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC----C----------CC--------CH--- Q ss_conf 33455777999999984-25664321145034687776432100001351----0----------05--------96--- Q gi|254780573|r 296 KFGGRSWPAPVIRLAML-MTHYREPIDFTVQRLTEAEILLSKWPQTSTSK----G----------II--------DP--- 349 (461) Q Consensus 296 ~~~~k~y~p~viR~~lL-sshYRspLdfS~e~L~~A~~~l~kl~~~~~~~----~----------~~--------~~--- 349 (461) T Consensus 679 ----~~yGADa~Rlf~mF~~P~~~~L~W~~~g~~G~~RFL~RVw~l~~~~~~~~~~~~~avrP~~~~~~~~l~~~~~~~~ 754 (916) T TIGR00396 679 ----KKYGADALRLFIMFMGPIAASLEWNESGLEGARRFLDRVWNLVKEILGELSGIISAVRPKTELTETALEEAQKELR 754 (916) T ss_pred ----HHCCHHHHHHHHHHCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHEEEEECCCCCCCCCCCCCHHHHHH T ss_conf ----4048027999997048831414777111013568889999999873266000255424610034311230468999 Q ss_pred --------HHHHHCCC-H--HHHHHHHHHHHHHHHHHCCCHH Q ss_conf --------77630211-0--1279999999999997513067 Q gi|254780573|r 350 --------AVLSALYN-D--LNTVSAIQALHKLARESTKNHD 380 (461) Q Consensus 350 --------~f~~AL~D-D--LNTp~ALa~L~~lvk~~n~~~~ 380 (461) T Consensus 755 ~~~~~~lk~v~e~~~~~~~~fNT--~IS~~M~l~N~L~k~~~ 794 (916) T TIGR00396 755 REVHKFLKKVTEDLEKLELSFNT--AISAMMELLNALYKATK 794 (916) T ss_pred HHHHHHHHHHHHHCCCCCHHHHH--HHHHHHHHHHHHHHHCC T ss_conf 99999998887531762013558--99999999999873102 |
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Leucyl tRNA synthetase (6.1.1.4 from EC) is an alpha monomer that belongs to class Ia. There are two different families of leucyl-tRNA synthetases. This family includes the eubacterial and mitochondrial synthetases. The crystal structure of leucyl-tRNA synthetase from the hyperthermophile Thermus thermophilus has an overall architecture that is similar to that of isoleucyl-tRNA synthetase, except that the putative editing domain is inserted at a different position in the primary structure. This feature is unique to prokaryote-like leucyl-tRNA synthetases, as is the presence of a novel additional flexibly inserted domain . ; GO: 0000166 nucleotide binding, 0004823 leucine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006429 leucyl-tRNA aminoacylation, 0005737 cytoplasm. |
| >KOG0435 consensus | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.1e-05 Score=60.92 Aligned_cols=60 Identities=22% Similarity=0.268 Sum_probs=53.4 Q ss_pred EEECCCCCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHH-CCCCCCCCCCCHHHHHHHHHHHHHCCC Q ss_conf 6420223323321408998502533455777999999984-256643211450346877764321000 Q gi|254780573|r 273 LEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAML-MTHYREPIDFTVQRLTEAEILLSKWPQ 339 (461) Q Consensus 273 i~geKMSKSlGN~iti~dlL~~~~~~~k~y~p~viR~~lL-sshYRspLdfS~e~L~~A~~~l~kl~~ 339 (461) T Consensus 613 ~t~eKMSKSK~NGVdP~~~v-------~~yG~D~tRl~ilf~ap~~~~~nW~es~i~Gi~rwl~riw~ 673 (876) T KOG0435 613 VTYEKMSKSKHNGVDPADVV-------LEYGVDTTRLYILFAAPPRDPINWNESAIPGIKRWLQRIWA 673 (876) T ss_pred EEHHHHHHCCCCCCCHHHHH-------HHHCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH T ss_conf 44887320235798989999-------88483177899986178656666663324549999999999 |
|
| >cd07955 Anticodon_Ia_Cys_like Anticodon-binding domain of cysteinyl tRNA synthetases and domain found in MshC | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00016 Score=52.72 Aligned_cols=71 Identities=27% Similarity=0.351 Sum_probs=51.6 Q ss_pred HHHHHHHHHHHHHCCCCCCCCC-----CCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCC-C---H-HHHHHHHHHHHHCC Q ss_conf 0346877764321000013510-----05967763021101279999999999997513-0---6-79999999998717 Q gi|254780573|r 324 VQRLTEAEILLSKWPQTSTSKG-----IIDPAVLSALYNDLNTVSAIQALHKLARESTK-N---H-DLLPIFNASAHILG 393 (461) Q Consensus 324 ~e~L~~A~~~l~kl~~~~~~~~-----~~~~~f~~AL~DDLNTp~ALa~L~~lvk~~n~-~---~-~~~~~~~~~~~iLG 393 (461) T Consensus 1 d~~L~~A~~rL~rwR~A~a~~~~~~a~~~v~~~r~aLadDLdTP~ALaalD~Wa~~~l~~~g~~~~ap~~v~~avDALLG 80 (81) T cd07955 1 DEVLADAEARLARWRSAVALPDGPDAEALVARLREALADDLDTPKALAALDAWAREALSRGGTDPDAPALVRTAVDALLG 80 (81) T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCC T ss_conf 95899999999999998748679987999999999987337968999999999998762479987663899999998818 Q ss_pred C Q ss_conf 6 Q gi|254780573|r 394 I 394 (461) Q Consensus 394 l 394 (461) T Consensus 81 v 81 (81) T cd07955 81 V 81 (81) T ss_pred C T ss_conf 8 |
This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA. The family also includes a domain of MshC, the rate-determining enzyme in the mycothiol biosynthetic pathway, which is specific to actinomycetes. The anticodon-binding site of CysRS lies C-terminal to this model's footprint and is not shared by MshC. |
| >cd00814 MetRS_core This is the catalytic core domain of methionine tRNA synthetase (MetRS) | Back alignment and domain information |
|---|
Probab=97.41 E-value=4.4e-05 Score=56.71 Aligned_cols=69 Identities=13% Similarity=0.158 Sum_probs=35.2 Q ss_pred EEEEECCCCCC----CEEECCCCCCCCCCCCHHHHHHHHHCCCC-EEEEEECCCCCCCCCHHHHHHHHHHCCCCCCHHHE Q ss_conf 26663377666----31414677667643320477778752984-14874135666687513668888640875301210 Q gi|254780573|r 191 FILWKRSTPME----PGWESPWGRGRPGWHIECSAMSSHYLGKV-FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIW 265 (461) Q Consensus 191 FaLWK~~~~~e----~~w~spwG~GRPGWHiECsam~~~~lg~~-~DIH~GG~DL~FPHHENEiAQs~a~~~~~~~a~yW 265 (461) T Consensus 203 ~yvW~da~~gy~~~~~~~~--~~~~~~~~~~~~~~~~ih~~G~Di~~~H~----~~~~a~--~~a~~~~~~~-~~~~~g~ 273 (319) T cd00814 203 IYVWFDALIGYISATGYYT--DEWGNSWWWNDPWPELVHFIGKDIVPFHA----IYWPAM--LLGAGLPLPT-RIFAHGY 273 (319) T ss_pred EECCHHCCCCCCCCCCCCC--CCCCCCCCCCCCCCCEEEEECCCCCCHHH----HHHHHH--HHHCCCCCCC-EEEECCE T ss_conf 3002101234000146666--65687644456884126784476431888----789999--9856998786-8887023 Q ss_pred ECC Q ss_conf 034 Q gi|254780573|r 266 IHN 268 (461) Q Consensus 266 lH~ 268 (461) T Consensus 274 l~~ 276 (319) T cd00814 274 LTV 276 (319) T ss_pred EEE T ss_conf 998 |
This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and a anti-codon binding domain functions as a monomer. However, in some species, the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion that IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function. |
| >TIGR00422 valS valyl-tRNA synthetase; InterPro: IPR002303 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.017 Score=38.26 Aligned_cols=65 Identities=20% Similarity=0.282 Sum_probs=32.5 Q ss_pred CCHHHHHHHHHHHHHHH-HHHHHHCCCCCCC--CC--CEEECC-----HHCCCCC-CCC-----CCCHHHHHHHHHCCCC Q ss_conf 10001235677778999-9987411432012--89--287522-----0024543-224-----6754666643210222 Q gi|254780573|r 119 PTHQPRATNHIPQMIYL-IQNIILHGHAYEA--NN--EIIFDT-----SSIPNYG-SFS-----RRKIDEQKMGTRVPEK 182 (461) Q Consensus 119 p~~~pr~t~~i~~~i~~-i~~L~~~g~aY~~--~g--~VyFdv-----~~~~~YG-~Ls-----~~~~~~~~~g~r~~~~ 182 (461) T Consensus 534 Pt~-~L~TG~--DIiFFWV~RMi~~~~~~tgDEnGkP~~PFk~v~ihGLVRDeqG~KMSKSlGNvIdP~d~I~GI~L~dL 610 (970) T TIGR00422 534 PTD-LLVTGY--DIIFFWVARMILRSLALTGDENGKPQVPFKDVYIHGLVRDEQGRKMSKSLGNVIDPLDVIEGISLDDL 610 (970) T ss_pred CCC-CCCCHH--HHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCEEECCCCCCCCCCCCCCCCHHHHHCCCCCHHH T ss_conf 876-565303--68899999998621554013586988782025865445558885122205683476986068870789 Q ss_pred CCCC Q ss_conf 2101 Q gi|254780573|r 183 YHKK 186 (461) Q Consensus 183 ~~K~ 186 (461) T Consensus 611 ~~K~ 614 (970) T TIGR00422 611 LEKR 614 (970) T ss_pred HHHH T ss_conf 9997 |
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm. |
| >KOG2007 consensus | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0031 Score=43.51 Aligned_cols=40 Identities=28% Similarity=0.214 Sum_probs=27.9 Q ss_pred HHHHHHHHHHH----CCC---HHHHHHHHHH-HHHCCCEEEECCCCCCC Q ss_conf 99999999988----179---8999999999-99889799986998877 Q gi|254780573|r 411 KLVQERLILLK----MKK---FSSADYIRKQ-LESKGFILEDYKNPDNG 451 (461) Q Consensus 411 ~Li~~R~~AR~----~KD---f~~AD~IRde-L~~~GI~ieDt~dG~~w 451 (461) T Consensus 472 ~L~~fr~~vRe~a~~~~~~~iL~l~d~lR~~~l~~~g~~led~~-g~~l 519 (586) T KOG2007 472 SLSEFREKVREVAREKKVPEILELCDTLRDSDLLELGVRLEDRK-GSTL 519 (586) T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHH T ss_conf 99999999999998505678998867888766887406877377-2078 |
|
| >COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.046 Score=35.10 Aligned_cols=61 Identities=25% Similarity=0.234 Sum_probs=38.4 Q ss_pred HHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCHHHEECCCEEE-EEECCCCCCCCC-CCCHHHH Q ss_conf 752984148741356666875136688886408753012100343257-642022332332-1408998 Q gi|254780573|r 225 HYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLN-LEGRKMSKSNGN-FITINEL 291 (461) Q Consensus 225 ~~lg~~~DIH~GG~DL~FPHHENEiAQs~a~~~~~~~a~yWlH~G~l~-i~geKMSKSlGN-~iti~dl 291 (461) T Consensus 177 ~~L~--~dlq~GG~DQ~~ni~~grdl~rr-~g~~~~---~~lt~PLL~~ldG~KmgKs~~~a~~~~s~~ 239 (401) T COG0162 177 VYLN--KDLQLGGSDQWGNILAGRDLIRR-LGQKKV---VGLTTPLLTGLDGKKMGKSEGGAVWLDSEK 239 (401) T ss_pred HHHC--CCHHCCCHHHHHHHHHHHHHHHH-HCCCCE---EEEEECCCCCCCCCCCCCCCCCCEECCCCC T ss_conf 9974--52311876789999999999998-089972---899835503898881566677867703788 |
|
| >pfam00579 tRNA-synt_1b tRNA synthetases class I (W and Y) | Back alignment and domain information |
|---|
Probab=92.38 E-value=0.035 Score=35.94 Aligned_cols=65 Identities=29% Similarity=0.304 Sum_probs=39.5 Q ss_pred HHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCC---CCCHHHEECCCEE-EEEEC-CCCCCCCC-CCCHHHH Q ss_conf 787529841487413566668751366888864087---5301210034325-76420-22332332-1408998 Q gi|254780573|r 223 SSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRI---EKTANIWIHNGFL-NLEGR-KMSKSNGN-FITINEL 291 (461) Q Consensus 223 ~~~~lg~~~DIH~GG~DL~FPHHENEiAQs~a~~~~---~~~a~yWlH~G~l-~i~ge-KMSKSlGN-~iti~dl 291 (461) T Consensus 142 a~D~~~l~~~i~~gG~DQ~~-~~~l~rdl~~k~~~~~~~~p---~~l~~~ll~~~~G~~KMSKS~~nsaI~L~d~ 212 (291) T pfam00579 142 AADILLLKADLQPGGSDQWG-HIELGRDLARRFNKKVFKKP---VGLTNPLLTGLDGGKKMSKSAGNSAIFLDDE 212 (291) T ss_pred HCCCHHCCCCCCCCCCCHHH-HHHHHHHHHHHHCCCCCCCC---EEEECCCCCCCCCCCCCCCCCCCCEEECCCC T ss_conf 32300014675665600489-99999999999578567883---4874166226678766367899972666798 |
|
| >PRK12283 tryptophanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.014 Score=38.84 Aligned_cols=69 Identities=12% Similarity=0.109 Sum_probs=39.6 Q ss_pred EECCCCCCCCCCCCCHHHHHHHHHHHHHHH-HCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 616788884441112799999999999997-0799845799605523388899998708986448848999999999999 Q gi|254780573|r 30 VCGPTVYDFAHIGNARPMIVFDVLYRLLRY-YYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFV 108 (461) Q Consensus 30 ~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~-~~~~~~V~~v~niTDidDkii~~a~~~~~~~~~~~~~~~~a~~~~~~f~ 108 (461) T Consensus 6 lSGiqPTG~lHLGNylGai-----~~~v~lQ~~~~--~~~~--IaDlHA----------lT~~-~~~p~~l~~-~~~~~~ 64 (398) T PRK12283 6 LSGMRPTGRLHLGHYHGVL-----KNWVKLQHEYP--CFFF--VADWHA----------LTTH-YETPEVIEK-NVWDMV 64 (398) T ss_pred EECCCCCCCCCHHHHHHHH-----HHHHHHHHCCC--EEEE--EECHHH----------HCCC-CCCHHHHHH-HHHHHH T ss_conf 5271789986168899999-----99999860377--0899--953655----------2078-789999999-999999 Q ss_pred HHHHHHCCCCC Q ss_conf 98776268541 Q gi|254780573|r 109 KDTTRLACLAP 119 (461) Q Consensus 109 ~d~~~L~v~~p 119 (461) T Consensus 65 a~~LA~GlDP~ 75 (398) T PRK12283 65 IDWLAAGVDPA 75 (398) T ss_pred HHHHHCCCCCC T ss_conf 99997588813 |
|
| >TIGR00395 leuS_arch leucyl-tRNA synthetase; InterPro: IPR004493 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=90.81 E-value=0.028 Score=36.61 Aligned_cols=70 Identities=17% Similarity=0.158 Sum_probs=48.6 Q ss_pred CEEEEEECCCC------EEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHH Q ss_conf 26223304798------4799961678888444111279999999999999707998457996055233888999987 Q gi|254780573|r 14 KITEFQAIDPS------NIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQ 85 (461) Q Consensus 14 ~~~~f~p~~~~------~v~~Y~CGpTvy~~~HiG~~r~~v~~D~l~R~L~~~~~~~~V~~v~niTDidDkii~~a~~ 85 (461) T Consensus 25 eDePitpd~~ElhrtYPKff~t~AYPYlnG~lHaGH~rT~t~~e~~arF~RM~Gkn--vLFPlGfHvTG~Pilg~A~~ 100 (1109) T TIGR00395 25 EDEPITPDDRELHRTYPKFFLTVAYPYLNGVLHAGHLRTFTIPEVVARFERMKGKN--VLFPLGFHVTGTPILGLAEL 100 (1109) T ss_pred CCCCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCE--ECCCCCCCCCCCCHHHHHHH T ss_conf 67888886113431155032015765567442123344333131588766106840--02246544358627889999 |
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Leucyl tRNA synthetase (6.1.1.4 from EC) is an alpha monomer that belongs to class Ia. There are two different families of leucyl-tRNA synthetases. This family includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases.; GO: 0000166 nucleotide binding, 0004823 leucine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006429 leucyl-tRNA aminoacylation, 0005737 cytoplasm. |
Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
| Identity | Alignment graph | Length | Definition | E-value |
| Target | 461 | cysteinyl-tRNA synthetase [Candidatus Liberibacter asia | ||
| 1li5_A | 461 | Crystal Structure Of Cysteinyl-Trna Synthetase Leng | 1e-102 | |
| 3c8z_A | 414 | The 1.6 A Crystal Structure Of Mshc: The Rate Limit | 5e-57 | |
| 2csx_A | 497 | Crystal Structure Of Aquifex Aeolicus Methionyl-Trn | 1e-04 | |
| 2x1l_A | 524 | Crystal Structure Of Mycobacterium Smegmatis Methio | 6e-04 | |
| 2zue_A | 629 | Crystal Structure Of Pyrococcus Horikoshii Arginyl- | 0.004 |
| gi|20664375|pdb|1LI5|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase Length = 461 | Back alignment and structure |
Score = 377 bits (967), Expect = e-102, Method: Composition-based stats.
Identities = 175/494 (35%), Positives = 251/494 (50%), Gaps = 70/494 (14%)
Query: 4 KIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGE 63
+KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+
Sbjct: 1 MLKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGY- 59
Query: 64 KCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQP 123
+ YVRNITDIDDKII+RA + ++ + + + KD L L P +P
Sbjct: 60 -KLKYVRNITDIDDKIIKRANENG------ESFVAMVDRMIAEMHKDFDALNILRPDMEP 112
Query: 124 RATNHIPQMIYLIQNIILHGHAYE-ANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182
RAT+HI ++I L + +I GHAY N +++FD + P YG SR+ +D+ + G RV
Sbjct: 113 RATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVV 172
Query: 183 YHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIF 242
K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+F
Sbjct: 173 DDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMF 232
Query: 243 PHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSW 302
PHHENEIAQS CA + N W+H+G + ++ KMSKS GNF T+ ++L + +
Sbjct: 233 PHHENEIAQSTCAHDGQ-YVNYWMHSGMVMVDREKMSKSLGNFFTVRDVL-------KYY 284
Query: 303 PAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKG---------IIDPAVLS 353
A +R ++ HYR ++++ + L +A L + + +
Sbjct: 285 DAETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIE 344
Query: 354 ALYNDLNTVSAIQALHKLAREST--KNHDLLPI------FNASAHILGIEVCKEH----- 400
A+ +D NT A L +ARE K D+ + +LG+ +
Sbjct: 345 AMDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQS 404
Query: 401 ---LNKNISIAIEKLVQERLILL-----------KMKKFSSADYIRKQLESKGFILEDYK 446
+ + IE L+Q+RL + +L G +LED
Sbjct: 405 GAQADDSEVAEIEALIQQRLDARKAKDWAAADAARD-----------RLNEMGIVLED-- 451
Query: 447 NPDNGQRMTRWKQK 460
G + T W++K
Sbjct: 452 ----GPQGTTWRRK 461
|
| >gi|219109269|pdb|3C8Z|A Chain A, The 1.6 A Crystal Structure Of Mshc: The Rate Limiting Enzyme In The Mycothiol Biosynthetic Pathway Length = 414 | Back alignment and structure |
Score = 226 bits (577), Expect = 5e-57, Method: Composition-based stats.
Identities = 112/412 (27%), Positives = 187/412 (45%), Gaps = 34/412 (8%)
Query: 3 KKIKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYG 62
++++++ +R++ MYVCG T YD H+G+A + FD+++RL
Sbjct: 19 PALRLFDSADRQVRPVTP--GPTATMYVCGITPYDATHLGHAATYLTFDLVHRLWLDAG- 75
Query: 63 EKCVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQ 122
V YV+N+TD+DD + ERA ++ + + TQ F +D L L P
Sbjct: 76 -HTVQYVQNVTDVDDPLFERAERDGID------WRTLGDRETQLFREDMAALRVLPPHDY 128
Query: 123 PRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEK 182
AT+ I +++ +++ ++ G AY + D + + + +
Sbjct: 129 VAATDAIAEVVEMVEKLLASGAAYIVEDAEYPDVYFRADATAQFGYESGYDRDTMLTLFA 188
Query: 183 YH--------KKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIH 234
K + D +LW+ P EP W SP+GRGRPGWH+ECSA++ +G DI
Sbjct: 189 ERGGDPDRPGKSDQLDALLWRAERPGEPSWPSPFGRGRPGWHVECSAIALTRIGTGLDIQ 248
Query: 235 GGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294
GGG DLIFPHHE A + + A ++H G + +G KMSKS GN + +++L
Sbjct: 249 GGGSDLIFPHHEYSAAHAESVTGERRFARHYVHTGMIGWDGHKMSKSRGNLVLVSQL--- 305
Query: 295 KKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDPAVL-- 352
+ IRL + HYRE ++ + L EA L++W + D +
Sbjct: 306 ---RAQGVDPSAIRLGLFSGHYREDRFWSNEVLDEANARLARWRSATALPEAPDATDVIA 362
Query: 353 ---SALYNDLNTVSAIQALHKLARESTKN-----HDLLPIFNASAHILGIEV 396
L +DL+T A+ AL ++ + +LG+++
Sbjct: 363 RVRQYLADDLDTPKALAALDGWCTDALSYGGHDTESPRLVATTVDALLGVDL 414
|
| gi|78101749|pdb|2CSX|A Chain A, Crystal Structure Of Aquifex Aeolicus Methionyl-Trna Synthetase Complexed With Trna(Met) Length = 497 | Back alignment and structure |
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 46/312 (14%), Positives = 82/312 (26%), Gaps = 51/312 (16%)
Query: 35 VYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDD---KIIERARQEHPSIP 91
V D H+G+A I D + R Y + V + +T D+ KI ++A + S
Sbjct: 16 VNDVPHLGHAYTTIAADTIARY--YRLRDYDVFF---LTGTDEHGLKIQKKAEELGISPK 70
Query: 92 INDA---------ISIITSKNTQQFV----KDTTRLACLAPTHQPRATNHIPQMIYLIQN 138
+ + T+ + + R ++ +
Sbjct: 71 ELVDRNAERFKKLWEFLKIEYTKFIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEGWYCV 130
Query: 139 -----------IILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKN 187
H S S + K+ E + +
Sbjct: 131 GCEEFKSEAELAEDHTCPIHQKKCEYIKEPSYFFRLSKYQDKLLELYEKNPEFIQPDYRR 190
Query: 188 PADFILWK--------RSTPMEPGWESPWG----RGRPGWHIECSAMSSHYLGK-----V 230
K W P W S K
Sbjct: 191 NEIISFVKQGLKDLSVTRPRSRVKWGIPVPFDPEHTIYVWFDALFNYISALEDKVEIYWP 250
Query: 231 FDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINE 290
D+H G D++ H A E ++ H + +EG+KMSK+ GN + E
Sbjct: 251 ADLHLVGKDILRFHTVYWPAFLMSL-GYELPKKVFAHG-WWTVEGKKMSKTLGNVVDPYE 308
Query: 291 LLETKKFGGRSW 302
+++ +
Sbjct: 309 VVQEYGLDEVRY 320
|
| >gi|301598374|pdb|2X1L|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Methionyl-Trna Synthetase In Complex With Methionine And Adenosine Length = 524 | Back alignment and structure |
Score = 50.5 bits (119), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/159 (13%), Positives = 47/159 (29%), Gaps = 11/159 (6%)
Query: 39 AHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDI-DDKIIERARQEHPSIPINDAIS 97
HIG+A I D + R R + V Y+ TD+ K+ E A +E +
Sbjct: 27 PHIGHAYEYIATDAIARFKRLDGYD--VRYLTG-TDVHGQKMAETAAKEGI------PAA 77
Query: 98 IITSKNTQQFVKDTTRLACLAPTHQPRA-TNHIPQMIYLIQNIILHGHAYEANNEIIFDT 156
+ +N+ F + +L + +H + + + G Y + +
Sbjct: 78 ELARRNSDVFQRLQEKLNISFDRFIRTSDADHYEASKAIWKRMADAGDIYLDAYKGWYSI 137
Query: 157 SSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWK 195
+ + + ++
Sbjct: 138 RDERFFTENETTEQPDGTRIATETGAPVTWTEEQTYFFR 176
|
| gi|256032304|pdb|2ZUE|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Arginyl-Trna Synthetase Complexed With Trna(Arg) And An Atp Analog (Anp) Length = 629 | Back alignment and structure |
Score = 47.8 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
Query: 40 HIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDD 77
H+G+AR I+ DV+ R+LR+ E V +N IDD
Sbjct: 135 HMGHARNAILGDVMARILRFLGYEVEV---QNY--IDD 167
|
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| Identity | Alignment graph | Length | Definition | E-value |
| Target | 461 | cysteinyl-tRNA synthetase [Candidatus Liberibacter asia | ||
| 1li5_A | 461 | Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cys | 1e-119 | |
| 3c8z_A | 414 | Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fo | 1e-101 | |
| 1irx_A | 523 | Lysyl-tRNA synthetase; beta sandwitch, zinc-binding str | 4e-33 | |
| 2x1l_A | 524 | Methionyl-tRNA synthetase; nucleotide-binding, protein | 1e-14 | |
| 1f7u_A | 607 | Arginyl-tRNA synthetase; RNA-protein complex, aminoacyl | 4e-21 | |
| 2csx_A | 497 | Methionyl-tRNA synthetase; ligase, riken structural gen | 6e-15 | |
| 2d5b_A | 500 | Methionyl-tRNA synthetase; rossmann fold, class 1A AARS | 5e-10 | |
| 3kfl_A | 564 | Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA syn | 4e-09 | |
| 1nzj_A | 298 | Hypothetical protein YADB; Zn cluster, glutamyl T-RNA s | 0.004 | |
| 1wkb_A | 810 | Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editin | 3e-09 | |
| 3h99_A | 560 | Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRN | 7e-05 | |
| 1gax_A | 862 | Valrs, valyl-tRNA synthetase; protein-RNA complex, ross | 9e-06 | |
| 1ile_A | 821 | Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthe | 2e-05 | |
| 1ffy_A | 917 | Isoleucyl-tRNA synthetase; protein-RNA complex, metal I | 2e-05 |
| >1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B Length = 461 | Back alignment and structure |
|---|
Score = 422 bits (1087), Expect = e-119
Identities = 177/482 (36%), Positives = 254/482 (52%), Gaps = 48/482 (9%)
Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64
+KI+NTL R+ EF+ I + MYVCG TVYD HIG+ R + FDV+ R LR+ +
Sbjct: 2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYK- 60
Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124
+ YVRNITDIDDKII+RA + ++ + + + KD L L P +PR
Sbjct: 61 -LKYVRNITDIDDKIIKRANEN------GESFVAMVDRMIAEMHKDFDALNILRPDMEPR 113
Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNEIIF-DTSSIPNYGSFSRRKIDEQKMGTRVPEKY 183
AT+HI ++I L + +I GHAY A+N + D + P YG SR+ +D+ + G RV
Sbjct: 114 ATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVD 173
Query: 184 HKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFP 243
K+NP DF+LWK S EP W SPWG GRPGWHIECSAM+ LG FDIHGGG DL+FP
Sbjct: 174 DKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233
Query: 244 HHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWP 303
HHENEIAQS CA + N W+H+G + ++ KMSKS GNF T+ ++L+ +
Sbjct: 234 HHENEIAQSTCAHD-GQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKY-------YD 285
Query: 304 APVIRLAMLMTHYREPIDFTVQRLTEAEILLSKW---------PQTSTSKGIIDPAVLSA 354
A +R ++ HYR ++++ + L +A L + + + A
Sbjct: 286 AETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEA 345
Query: 355 LYNDLNTVSAIQALHKLARESTKNHD--------LLPIFNASAHILGI--------EVCK 398
+ +D NT A L +ARE + + + +LG+
Sbjct: 346 MDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSG 405
Query: 399 EHLNKNISIAIEKLVQERLILLKMKKFSSADYIRKQLESKGFILEDYKNPDNGQRMTRWK 458
+ + IE L+Q+RL K K +++AD R +L G +LED T W+
Sbjct: 406 AQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLEDGPQ------GTTWR 459
Query: 459 QK 460
+K
Sbjct: 460 RK 461
|
| >3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis} Length = 414 | Back alignment and structure |
|---|
Score = 364 bits (935), Expect = e-101
Identities = 120/409 (29%), Positives = 192/409 (46%), Gaps = 34/409 (8%)
Query: 5 IKIYNTLERKITEFQAIDPSNIRMYVCGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEK 64
++++++ +R++ MYVCG T YD H+G+A + FD+++RL
Sbjct: 21 LRLFDSADRQVRPVTPGP--TATMYVCGITPYDATHLGHAATYLTFDLVHRLWLDAGHT- 77
Query: 65 CVTYVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPR 124
V YV+N+TD+DD + ERA ++ + + TQ F +D L L P
Sbjct: 78 -VQYVQNVTDVDDPLFERAERDGIDWRT------LGDRETQLFREDMAALRVLPPHDYVA 130
Query: 125 ATNHIPQMIYLIQNIILHGHAYEANNE----IIFDTSSIPNYGSFSRRKIDEQKMGTRV- 179
AT+ I +++ +++ ++ G AY + + F + +G S D
Sbjct: 131 ATDAIAEVVEMVEKLLASGAAYIVEDAEYPDVYFRADATAQFGYESGYDRDTMLTLFAER 190
Query: 180 ---PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGG 236
P++ K + D +LW+ P EP W SP+GRGRPGWH+ECSA++ +G DI GG
Sbjct: 191 GGDPDRPGKSDQLDALLWRAERPGEPSWPSPFGRGRPGWHVECSAIALTRIGTGLDIQGG 250
Query: 237 GLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKK 296
G DLIFPHHE A + + A ++H G + +G KMSKS GN + +++L
Sbjct: 251 GSDLIFPHHEYSAAHAESVTGERRFARHYVHTGMIGWDGHKMSKSRGNLVLVSQLRAQG- 309
Query: 297 FGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTSTSKGIIDP-----AV 351
IRL + HYRE ++ + L EA L++W + D V
Sbjct: 310 -----VDPSAIRLGLFSGHYREDRFWSNEVLDEANARLARWRSATALPEAPDATDVIARV 364
Query: 352 LSALYNDLNTVSAIQALHKLARE--STKNHD---LLPIFNASAHILGIE 395
L +DL+T A+ AL + S HD + +LG++
Sbjct: 365 RQYLADDLDTPKALAALDGWCTDALSYGGHDTESPRLVATTVDALLGVD 413
|
| >1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1 Length = 523 | Back alignment and structure |
|---|
Score = 137 bits (346), Expect = 4e-33
Identities = 42/318 (13%), Positives = 94/318 (29%), Gaps = 28/318 (8%)
Query: 22 DPSNIRMYV--CGPTVYDFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDID--D 77
+ YV G T + H+GN R + ++ LR E V ++ D D
Sbjct: 15 ERGEKEKYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYE--VRHIHMWDDYDRFR 72
Query: 78 KI---IERARQEHPSIPINDAISI------ITSKNTQQFVKDTTRLACLAPTHQPRATNH 128
K+ + + +++ +PI++ ++F ++ +L
Sbjct: 73 KVPRNVPQEWKDYLGMPISEVPDPWGCHESYAEHFMRKFEEEVEKLGIEVDLLYASELYK 132
Query: 129 IPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNP 188
+ I+ + + P + R + + +
Sbjct: 133 RGEYSEEIRLAFEKRDKIMEILNKYREIAKQP-PLPENWWPAMVYCPEHRREAEIIEWDG 191
Query: 189 ADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENE 248
+ +K E + G + W ++ + D G D + +
Sbjct: 192 GWKVKYKCPEGHEGWVDIRSGNVKLRWRVDWPMR---WSHFGVDFEPAGKDHLVAGSSYD 248
Query: 249 IAQSCCADRIEKTANIWIHNGFL--NLEGRKMSKSNGNFITINELLETKKFGGRSWPAPV 306
+ + K A + + F+ + KMS S GN I +++L +
Sbjct: 249 TGKEIIKEVYGKEAPLSLMYEFVGIKGQKGKMSGSKGNVILLSDLY-------EVLEPGL 301
Query: 307 IRLAMLMTHYREPIDFTV 324
+R + I +
Sbjct: 302 VRFIYARHRPNKEIKIDL 319
|
| >2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Length = 524 | Back alignment and structure |
|---|
Score = 76.3 bits (187), Expect = 1e-14
Identities = 58/349 (16%), Positives = 101/349 (28%), Gaps = 79/349 (22%)
Query: 40 HIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISII 99
HIG+A I D + R R G V Y+ K+ E A +E IP + +
Sbjct: 28 HIGHAYEYIATDAIARFKRLD-GYD-VRYLTGTDVHGQKMAETAAKEG--IPAAE----L 79
Query: 100 TSKNTQQFVKDTTRLACLAP----THQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFD 155
+N+ F + +L T H + + + G Y + +
Sbjct: 80 ARRNSDVFQRLQEKLNISFDRFIRTSDAD---HYEASKAIWKRMADAGDIYLDAYKGWYS 136
Query: 156 TSSIPNYGSFSRRKIDEQKM-----GTRVPEK------------------YHKKNPADFI 192
+ + + G V ++++P +FI
Sbjct: 137 IRDERFFTENETTEQPDGTRIATETGAPVTWTEEQTYFFRLSAYTDRLLALYEEHP-EFI 195
Query: 193 LWKRSTPMEPGWES-------------PWGRGRPGW-----HIECSAMSSHYLGKVF--- 231
+ S WG P ++ A++++ G F
Sbjct: 196 GPDARRNEIVSFVSGGLKDLSISRTTFDWGVPVPDHPDHVMYVWVDALTNYLTGVGFPDT 255
Query: 232 -----------DIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSK 280
D+H G D+I H A A +G+L G KMSK
Sbjct: 256 ESESFRRYWPADLHMIGKDIIRFHTVYWPAFLMSAG--LPLPKRIFAHGWLLNRGEKMSK 313
Query: 281 SNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTE 329
S GN + L++ FG V + + + + +
Sbjct: 314 SIGNVVDPVNLVD--TFG----LDQVRYFLLREVPFGQDGSYNEDAIIG 356
|
| >1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation, ligase, ligase/RNA complex; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A* Length = 607 | Back alignment and structure |
|---|
Score = 98.2 bits (244), Expect = 4e-21
Identities = 46/385 (11%), Positives = 97/385 (25%), Gaps = 61/385 (15%)
Query: 40 HIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERAR--------QEHPSIP 91
H G+ R I+ L L G + V + + D + A + P
Sbjct: 159 HAGHLRSTIIGGFLANLYE-KLGWE-VIRMNYLGDWGKQFGLLAVGFERYGNEEALVKDP 216
Query: 92 INDAISIITSKNTQ-----QFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAY 146
I+ + N + A + R + + + + +
Sbjct: 217 IHHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRFREFSIEK 276
Query: 147 EANN--------EIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRST 198
+ ++ S + + ID K E D + +
Sbjct: 277 YIDTYARLNIKYDVYSGESQVSKES--MLKAIDLFKEKGLTHED-KGAVLIDLTKFNKKL 333
Query: 199 PMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRI 258
+S + + FD + H + +
Sbjct: 334 GKAIVQKSDGTTLYLTRDVGAAMDRYEKYH--FDKMIYVIASQQDLHAAQFFEILKQMGF 391
Query: 259 EKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAP------------- 305
E A H F ++G MS G + ++ +LE K
Sbjct: 392 E-WAKDLQHVNFGMVQG--MSTRKGTVVFLDNILEETKEKMHEVMKKNENKYAQIEHPEE 448
Query: 306 --------VIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQTS---------TSKGIID 348
+ + + +F +R+ E + Q + + GI
Sbjct: 449 VADLVGISAVMIQDMQGKRINNYEFKWERMLSFEGDTGPYLQYAHSRLRSVERNASGITQ 508
Query: 349 PAVLSALYNDLNTVSAIQALHKLAR 373
++A ++ L +A + L +
Sbjct: 509 EKWINADFSLLKEPAAKLLIRLLGQ 533
|
| >2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* Length = 497 | Back alignment and structure |
|---|
Score = 77.4 bits (189), Expect = 6e-15
Identities = 52/316 (16%), Positives = 89/316 (28%), Gaps = 61/316 (19%)
Query: 27 RMYVCGPTVY--DFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERAR 84
+ YV P Y D H+G+A I D + R R V ++ + KI ++A
Sbjct: 6 KFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYR-LRDYD-VFFLTGTDEHGLKIQKKAE 63
Query: 85 QEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIIL--H 142
+ + + +N ++F K L T R T+
Sbjct: 64 EL------GISPKELVDRNAERFKKLWEFLKI-EYTKFIRTTDPYHVKFVQKVFEECYKR 116
Query: 143 GHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPE-------------------KY 183
G Y E + + + + E +
Sbjct: 117 GDIYLGEYEGWYCVGCEEFKSEAELAEDHTCPIHQKKCEYIKEPSYFFRLSKYQDKLLEL 176
Query: 184 HKKNPADF-------ILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVF----- 231
++KNP + R R W I H + F
Sbjct: 177 YEKNPEFIQPDYRRNEIISFVKQGLKDLSVTRPRSRVKWGIPVPFDPEHTIYVWFDALFN 236
Query: 232 ---------------DIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGR 276
D+H G D++ H A + +G+ +EG+
Sbjct: 237 YISALEDKVEIYWPADLHLVGKDILRFHTVYWPAFLMSLG--YELPKKVFAHGWWTVEGK 294
Query: 277 KMSKSNGNFITINELL 292
KMSK+ GN + E++
Sbjct: 295 KMSKTLGNVVDPYEVV 310
|
| >2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A Length = 500 | Back alignment and structure |
|---|
Score = 61.3 bits (147), Expect = 5e-10
Identities = 42/316 (13%), Positives = 78/316 (24%), Gaps = 59/316 (18%)
Query: 29 YVCGPTVY--DFAHIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQE 86
YV P Y H+G+A +V D L R R G + ++ + + + A+
Sbjct: 6 YVTTPIYYVNAEPHLGHAYTTVVADFLARWHR-LDGYR-TFFLTGTDEHGETVYRAAQAA 63
Query: 87 HPSIPINDAISIITSKNTQQFVKDTTRLACLAP----THQPRATNHIPQMIYLIQNIILH 142
+ + + +F + L T + R + ++ +
Sbjct: 64 ------GEDPKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDI 117
Query: 143 GHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRS----- 197
+ + + R E + + W +
Sbjct: 118 YYGEYEGLYCVSCERFYTEKELVEGLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQEN 177
Query: 198 ------------------------TPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDI 233
+ P PWG P + + L
Sbjct: 178 PDLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPWDENHVTFVWFDALLNYVSA 237
Query: 234 HGGGLDLIFPHHENEIAQSCCADRIEKTANIW----------------IHNGFLNLEGRK 277
+ D ++ A W + L +GRK
Sbjct: 238 LDYPEGEAYRTFWPHAWHLIGKDILKPHAVFWPTMLKAAGIPMYRHLNVGGFLLGPDGRK 297
Query: 278 MSKSNGNFITINELLE 293
MSK+ GN + LLE
Sbjct: 298 MSKTLGNVVDPFALLE 313
|
| >3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} Length = 564 | Back alignment and structure |
|---|
Score = 58.2 bits (140), Expect = 4e-09
Identities = 53/325 (16%), Positives = 100/325 (30%), Gaps = 88/325 (27%)
Query: 40 HIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDD---KIIERARQEHPSIPINDAI 96
HIG+ ++ DVL R R GE+ V +T D+ K+ E A ++ + D
Sbjct: 42 HIGHVYSTLIVDVLGRYHR-VKGEE----VFVMTGTDEHGQKVAEAAAKQG--VSPMD-- 92
Query: 97 SIITSKNTQQFVKDTTRLAC--------LAPTHQPRATNHIPQMIYLIQNIIL--HGHAY 146
T+ + +F + + PTH+ + I + + +I L + Y
Sbjct: 93 --FTTSVSSEFKQCFQEMNYDMNYFIRTTNPTHE-KLVQDIWKKLAAKGDIYLGKYEGWY 149
Query: 147 EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNP-------ADFIL------ 193
++E ++ + + V ++N + +L
Sbjct: 150 SVSDESFLTAQNVADGVDRDGKPCKVSLESGHVVTWVEEENYMFRLSAFRERLLKYFHDH 209
Query: 194 -------------------------WKRSTPMEPGWESP-WGRGRPGWHIECSAMSSHYL 227
R W P G R ++ A+ ++Y
Sbjct: 210 PNCIVPEFRRREVIKTVEKGLFDLSISRKRESVMNWSIPVPGDERHCIYVWLDALFNYYT 269
Query: 228 GKVF----------------------DIHGGGLDLIFPHHENEIAQSCCADRIEKTANIW 265
G + D+H G D++ H A A+
Sbjct: 270 GALTRVATDGTETLDEDHHALNRWPADVHVVGKDILKFHAIYWPAFLMSAE--LPLPERL 327
Query: 266 IHNGFLNLEGRKMSKSNGNFITINE 290
+ +G+ + +K+SKS GN E
Sbjct: 328 VSHGWWTKDHKKISKSLGNAFDPVE 352
|
| >1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* Length = 298 | Back alignment and structure |
|---|
Score = 38.5 bits (89), Expect = 0.004
Identities = 33/249 (13%), Positives = 57/249 (22%), Gaps = 38/249 (15%)
Query: 40 HIGNARPMIVFDVLYRLLRYYYGEKCVTYVRNITDIDDKIIERARQEHPSIPINDAISII 99
H G+ + + R + + VR I DID R
Sbjct: 19 HFGSLIAALGSYLQAR----ARQGRWL--VR-IEDID---PPREVPGA------------ 56
Query: 100 TSKNTQQFVKDTTRLACLAPTHQPRATNHIPQMIYLIQNIILHGHAYEANNEIIFDTSSI 159
+ ++ + + + G +Y S
Sbjct: 57 ----AETILRQLEHYGLHWDGDVLWQSQRHDAYREALAWLHEQGLSYYCTCTRARIQSIG 112
Query: 160 PNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWESPW----GRGRPGW 215
Y R + H L E + G +
Sbjct: 113 GIYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGIIHADEKLAREDFIIHRRDGLFAY 172
Query: 216 HIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWIHNGF-LNLE 274
++ + H+ G + G E + Q +IH LN +
Sbjct: 173 NL-AVVVDDHFQGVTEIVRGAD------LIEPTVRQISLYQLFGWKVPDYIHLPLALNPQ 225
Query: 275 GRKMSKSNG 283
G K+SK N
Sbjct: 226 GAKLSKQNH 234
|
| >1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Length = 810 | Back alignment and structure |
|---|
Score = 58.5 bits (140), Expect = 3e-09
Identities = 46/191 (24%), Positives = 70/191 (36%), Gaps = 11/191 (5%)
Query: 147 EANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFILWKRSTPMEPGWES 206
E E + D++ Y + SR ++ G PEK + L + S E E
Sbjct: 523 EWVIESLSDSTIYMAYYTISRHINKLRQEGKLDPEKLTPEFFDYIFLEEFSEDKEKELEK 582
Query: 207 PWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIAQSCCADRIEKTANIWI 266
G H Y D G DLI H I R E
Sbjct: 583 KTGIPAEIIHEMKEEFEYWYP---LDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIA 639
Query: 267 HNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLAML-MTHYREPIDFTVQ 325
NGF LEG+KMSKS GN + + +E + G A V+RL ++ + + D+ +
Sbjct: 640 VNGFGTLEGQKMSKSKGNVLNFIDAIE--ENG-----ADVVRLYIMSLAEHDSDFDWRRK 692
Query: 326 RLTEAEILLSK 336
+ + + +
Sbjct: 693 EVGKLRKQIER 703
|
| >3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, metal-binding, nucleotide-binding; HET: CIT; 1.40A {Escherichia coli k-12} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A Length = 560 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 7e-05
Identities = 31/201 (15%), Positives = 57/201 (28%), Gaps = 26/201 (12%)
Query: 134 YLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKNPADFIL 193
L + N++ S SR G +P K
Sbjct: 213 MLQAWTRSGALQEQVANKMQEWFESGLQQWDISRDAPYF---GFEIPNAPGKYFYVWLDA 269
Query: 194 WKRSTPMEPGWESPWGRG---RPGWHIECSAMSSHYLGKVFDIHGGGLDLIFPHHENEIA 250
G W + +A H++GK D+++ A
Sbjct: 270 PIGLMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGK---------DIVYFLSLFWPA 320
Query: 251 QSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPAPVIRLA 310
+ + +G++ + G KMSKS G FI + L + A +R
Sbjct: 321 M--LEGSNFRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLNH-------FDADSLRYY 371
Query: 311 ML--MTHYREPIDFTVQRLTE 329
++ + ID ++ +
Sbjct: 372 YTAKLSSRIDDIDLNLEDFVQ 392
|
| >1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A Length = 862 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 9e-06
Identities = 29/145 (20%), Positives = 47/145 (32%), Gaps = 12/145 (8%)
Query: 180 PEKYHKKNPADFILWKRSTPMEPGW--ESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGG 237
E KR + W + W GW E + + Y D+ G
Sbjct: 432 LEDPTSCEACGSPRLKRDEDVFDTWFSSALWPLSTLGWPEETEDLKAFY---PGDVLVTG 488
Query: 238 LDLIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKF 297
D++F + +H L+ +G+KMSKS GN I E++E
Sbjct: 489 YDILFLWVSRMEVSGYHFMGERPFKTVLLHGLVLDEKGQKMSKSKGNVIDPLEMVE---- 544
Query: 298 GGRSWPAPVIRLAMLMTHYREPIDF 322
+ A +R A++
Sbjct: 545 ---RYGADALRFALIYLATGGQDIR 566
|
| >1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus HB8} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* Length = 821 | Back alignment and structure |
|---|
Score = 45.7 bits (107), Expect = 2e-05
Identities = 18/115 (15%), Positives = 31/115 (26%)
Query: 180 PEKYHKKNPADFILWKRSTPMEPGWESPWGRGRPGWHIECSAMSSHYLGKVFDIHGGGLD 239
+ A +R + W H D G+D
Sbjct: 494 YVDQVELACACGGTMRRVPYVIDVWYDSGAMPFASLHYPFEHEEVFRESFPADFIAEGID 553
Query: 240 LIFPHHENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLET 294
+ N+ H L+ +G+KMSKS GN + +++
Sbjct: 554 QTRGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKGQKMSKSKGNVVDPWDIIRK 608
|
| >1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A* Length = 917 | Back alignment and structure |
|---|
Score = 45.8 bits (107), Expect = 2e-05
Identities = 36/276 (13%), Positives = 75/276 (27%), Gaps = 10/276 (3%)
Query: 68 YVRNITDIDDKIIERARQEHPSIPINDAISIITSKNTQQFVKDTTRLACLAPTHQPRATN 127
+ + I R + P I + +Q + D
Sbjct: 383 ALLKLDFITHSYPHDWRTKKPVIFRATPQWFASISKVRQDILDAIENTNFKVNWGKTRIY 442
Query: 128 HIPQMIYLIQNIILHGHAYEANNEIIFDTSSIPNYGSFSRRKIDEQKMGTRVPEKYHKKN 187
++ + + I + + + G+ + + K+
Sbjct: 443 NMVRDRGEWVISRQRVWGVPLPVFYAENGEIIMTKETVNHVADLFAEHGSNIWFEREAKD 502
Query: 188 PADFILWKRSTPMEPGWESPWGRGR---PGWHIECSAMSSHYLGKVFDIHGGGLDLIFPH 244
+P + G + L D++ G D
Sbjct: 503 LLPEGFTHPGSPNGTFTKETDIMDVWFDSGSSHRGVLETRPELSFPADMYLEGSDQYRGW 562
Query: 245 HENEIAQSCCADRIEKTANIWIHNGFLNLEGRKMSKSNGNFITINELLETKKFGGRSWPA 304
+ I S + + H ++ EG+KMSKS GN I +++++ A
Sbjct: 563 FNSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSLGNVIVPDQVVK-------QKGA 615
Query: 305 PVIRLAMLMTHYREPIDFTVQRLTEAEILLSKWPQT 340
+ RL + T Y + + + L + K T
Sbjct: 616 DIARLWVSSTDYLADVRISDEILKQTSDDYRKIRNT 651
|
Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
| Identity | Alignment graph | Length | Definition | Probability |
| Target | 461 | cysteinyl-tRNA synthetase [Candidatus Liberibacter asia | ||
| 1li5_A | 461 | Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cys | 100.0 | |
| 3c8z_A | 414 | Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fo | 100.0 | |
| 2csx_A | 497 | Methionyl-tRNA synthetase; ligase, riken structural gen | 100.0 | |
| 2d5b_A | 500 | Methionyl-tRNA synthetase; rossmann fold, class 1A AARS | 100.0 | |
| 2x1l_A | 524 | Methionyl-tRNA synthetase; nucleotide-binding, protein | 100.0 | |
| 3kfl_A | 564 | Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA syn | 100.0 | |
| 3h99_A | 560 | Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRN | 100.0 | |
| 1rqg_A | 722 | Methionyl-tRNA synthetase; translation, dimerization, l | 99.95 | |
| 1gax_A | 862 | Valrs, valyl-tRNA synthetase; protein-RNA complex, ross | 99.94 | |
| 1irx_A | 523 | Lysyl-tRNA synthetase; beta sandwitch, zinc-binding str | 100.0 | |
| 3fnr_A | 464 | Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, s | 99.91 | |
| 1iq0_A | 592 | Arginyl-tRNA synthetase; riken structural genomics/prot | 99.73 | |
| 1nzj_A | 298 | Hypothetical protein YADB; Zn cluster, glutamyl T-RNA s | 99.58 | |
| 2o5r_A | 481 | Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutam | 99.5 | |
| 1f7u_A | 607 | Arginyl-tRNA synthetase; RNA-protein complex, aminoacyl | 99.49 | |
| 2cfo_A | 492 | Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthe | 99.47 | |
| 3aii_A |