254780583

254780583

glyoxalase II

GeneID in NCBI database:8209580Locus tag:CLIBASIA_02350
Protein GI in NCBI database:254780583Protein Accession:YP_003064996.1
Gene range:-(699385, 700155)Protein Length:256aa
Gene description:glyoxalase II
COG prediction:[R] Zn-dependent hydrolases, including glyoxylases
KEGG prediction:glyoxalase II; K01069 hydroxyacylglutathione hydrolase [EC:3.1.2.6]
SEED prediction:Hydroxyacylglutathione hydrolase (EC 3.1.2.6)
Pathway involved in KEGG:Pyruvate metabolism [PATH:las00620]
Subsystem involved in SEED:Cobalt-zinc-cadmium resistance;
Glutathione-regulated potassium-efflux system and associated functions;
Glutathione: Non-redox reactions
sequencesequence profile

Prediction of Local Sequence Properties

SourceSummaryResult
scaler
NCBI Databasesequence
PSIPREDsecondary structure
SSPROsecondary structure
DISEMBLcoil and loop
DISEMBLflexible loop
SEGlow complexity
DISOPREDdisordered
DISEMBLmissing residues
DISPROdisordered
TMHMMnone TM-Helix
TOPPREDnone TM-Helix
HMMTOPnone TM-Helix
MEMSATnone TM-Helix
MEMSAT_SVMnone TM-Helix
PHOBIUSnone TM-Helix
SignalP_HMMno
SignalP_NNno
COILScoiled coil
70% MSAconservation map
90% MSAconservation map
  
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250------
MTSLNIAISLYHDNFCILIHNHKYRLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLEESSKIPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMNDHFLCVGDTLFSLGCGRIFEDSYAEMFESLEKIKSFSDKTHIYFGHEYTENNAYFALSCDPHNLELQKYCSKVKSMRSQNLYTNPSTISLEKKVNPFLRIENTSLRKNLNMENASNLAVFTELRIRKNQSK
cEEEEEEcccccccEEEEEEEccccEEEEEccccHHHHHHHHHHccccccEEEEccccccHHcHHHHHHHHccccEEEEHHHHcccccccEEcccccEEEEccEEEEEEEccccccccEEEEEccccEEEEEEEEccccccccccccHHHHHHHHHHHHcccccEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHcEEEEEccHHHHHHcccccccHHHHHHHHHHHHHccc
cccEEEEcccccccEEEEEEccccccEEEEccccHHHHHHHHHHccccEEEEEEccccccccccHHHHHHHcccEEEcccccccccccccEEcccccEEEEccEEEEEEEcccccccEEEEEccccccEEcccHHHHccccccccccHHHHHHHHHHHHHcccccEEEEccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccHHHHHccccccccccHHHHHHHccccccHHHHHHHHHHHHHccc
MTSLNIAISLYHDNFCILIHNHKYrltaaidapdTYIISKMLREKGWFLTHIFNTHHHidhtranlnlkkffnctifgpleesskipgidhglsdgdtfdfgshpikiiatpghtiGHICYHFmndhflcvgdtlfslgcgrifeDSYAEMFESLEKIKsfsdkthiyfgheytennayfalscdphnleLQKYCSKVKSmrsqnlytnpstislekkvnpflrieNTSLRknlnmenasnlAVFTELRIRKNQSK
MTSLNIAISLYHDNFCILIHNHKYRLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLEESSKIPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMNDHFLCVGDTLFSLGCGRIFEDSYAEMFESLEKIKSFSDKTHIYFGHEYTENNAYFALSCDPHNLELQKYCSKVKSMRSQNlytnpstislekkvnPFLRIENTslrknlnmenasnlavftelrirknqsk
MTSLNIAISLYHDNFCILIHNHKYRLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLEESSKIPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMNDHFLCVGDTLFSLGCGRIFEDSYAEMFESLEKIKSFSDKTHIYFGHEYTENNAYFALSCDPHNLELQKYCSKVKSMRSQNLYTNPSTISLEKKVNPFLRIENTSLRKNLNMENASNLAVFTELRIRKNQSK
**SLNIAISLYHDNFCILIHNHKYRLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLEESSKIPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMNDHFLCVGDTLFSLGCGRIFEDSYAEMFESLEKIKSFSDKTHIYFGHEYTENNAYFALSCDPHNLELQKYCSKVKSMRSQNLYTNPSTISLEKKVNPFLRIENTSLRKNLNMENASNLAVFTELRIRKNQ**
MTSLNIAISLYHDNFCILIHNHKYRLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLEESSKIPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMNDHFLCVGDTLFSLGCGRIFEDSYAEMFESLEKIKSFSDKTHIYFGHEYTENNAYFALSCDPHNLELQKYCSKVKSMRSQNLYTNPSTISLEKKVNPFLRIENTSLRKNLNMENASNLAVFTELRIRKNQSK
*TSLNIAISLYHDNFCILIHNHKYRLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLEESSKIPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMNDHFLCVGDTLFSLGCGRIFEDSYAEMFESLEKIKSFSDKTHIYFGHEYTENNAYFALSCDPHNLELQKYCSKVKSMRSQNLYTNPSTISLEKKVNPFLRIENTSLRKNLNMENASNLAVFTELRIRKNQS*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTSLNIAISLYHDNFCILIHNHKYRLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLEESSKIPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMNDHFLCVGDTLFSLGCGRIFEDSYAEMFESLEKIKSFSDKTHIYFGHEYTENNAYFALSCDPHNLELQKYCSKVKSMRSQNLYTNPSTISLEKKVNPFLRIENTSLRKNLNMENASNLAVFTELRIRKNQSK
MTSLNIAISLYHDNFCILIHNHKYRLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLEESSKIPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMNDHFLCVGDTLFSLGCGRIFEDSYAEMFESLEKIKSFSDKTHIYFGHEYTENNAYFALSCDPHNLELQKYCSKVKSMRSQNLYTNPSTISLEKKVNPFLRIENTSLRKNLNMENASNLAVFTELRIRKNQSK
MTSLNIAISLYHDNFCILIHNHKYRLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLEESSKIPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMNDHFLCVGDTLFSLGCGRIFEDSYAEMFESLEKIKSFSDKTHIYFGHEYTENNAYFALSCDPHNLELQKYCSKVKSMRSQNLYTNPSTISLEKKVNPFLRIENTSLRKNLNMENASNLAVFTELRIRKNQSK

Close Homologs Detected by BLAST or PSI-BLAST

Homolog within the Genome Detected by BLAST

IdentityAlignment graphLength Definition E-value
Target256 glyoxalase II [Candidatus Liberibacter asiaticus str. p
254780758216 hypothetical protein CLIBASIA_03225 [Candidatus Li 3e-15
>gi|254780758|ref|YP_003065171.1| hypothetical protein CLIBASIA_03225 [Candidatus Liberibacter asiaticus str. psy62] Length = 216 Back     alignment
 Score = 73.6 bits (179), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 80/188 (42%), Gaps = 22/188 (11%)

Query: 6   IAISLYHDNFCILIHNHKYRLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRAN 65
           + ++ +  N   L               D  II  +++ + + +  I+ TH H+DH    
Sbjct: 9   VQVTPFKQNCTFLFDEESLEAVVVDPGGDLDIIKDVIQSRNFHVKQIWITHGHVDHVGGA 68

Query: 66  LNLKKFFNCTIFGP----------LEESSKIPGI---------DHGLSDGDTFDFGSHPI 106
             LK+  + TI GP          ++E +++  I         D  L DGDT   G+H  
Sbjct: 69  AQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHIF 128

Query: 107 KIIATPGHTIGHICYHFMNDHFLCVGDTLFSLGCGR--IFEDSYAEMFESL-EKIKSFSD 163
           K+   PGH+ GH+ Y    ++F  +GDTLF    GR  I    Y ++  S+  KI    D
Sbjct: 129 KVFHCPGHSPGHVIYVNFENNFAHLGDTLFRSSIGRTDILHGDYQQLINSINNKILPLGD 188

Query: 164 KTHIYFGH 171
           +     GH
Sbjct: 189 EISFVCGH 196

Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations

IdentityAlignment graphLength Definition Round E-value
Target256 glyoxalase II [Candidatus Liberibacter asiaticus str. p
315121775256 glyoxalase II [Candidatus Liberibacter solanacearum CLs 1 1e-115
227823240256 putative glyoxalase II [Sinorhizobium fredii NGR234] Le 1 6e-70
222149971256 glyoxalase II [Agrobacterium vitis S4] Length = 256 1 2e-69
15966417256 putative hydroxyacylglutathione hydrolase (glyoxalase I 1 1e-68
159185823256 glyoxalase II [Agrobacterium tumefaciens str. C58] Leng 1 2e-68
150397750256 hydroxyacylglutathione hydrolase [Sinorhizobium medicae 1 2e-68
332716404256 putative glyoxalase II [Agrobacterium sp. H13-3] Length 1 4e-67
163759934247 putative hydroxyacylglutathione hydrolase (glyoxalase i 1 4e-65
86359395256 hydroxyacylgluthatione hydrolase protein [Rhizobium etl 1 5e-65
218517124256 hydroxyacylgluthatione hydrolase protein [Rhizobium etl 1 6e-65
>gi|315121775|ref|YP_004062264.1| glyoxalase II [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 256 Back     alignment and organism information
 Score =  417 bits (1071), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 196/256 (76%), Positives = 224/256 (87%)

Query: 1   MTSLNIAISLYHDNFCILIHNHKYRLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHID 60
           M  LNIAISLY+DNFCIL+H+ +++LT AID PDT  I +MLREK WFLTHIFNTHHHID
Sbjct: 1   MNKLNIAISLYYDNFCILVHDSQHQLTVAIDTPDTNTILRMLREKNWFLTHIFNTHHHID 60

Query: 61  HTRANLNLKKFFNCTIFGPLEESSKIPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHIC 120
           HTR NL+LKK FNCT+FGP  ES +IP IDHGLSDGDT +FG H I + +TPGHT+GHIC
Sbjct: 61  HTRGNLDLKKIFNCTVFGPSIESHQIPKIDHGLSDGDTLNFGQHQINVFSTPGHTMGHIC 120

Query: 121 YHFMNDHFLCVGDTLFSLGCGRIFEDSYAEMFESLEKIKSFSDKTHIYFGHEYTENNAYF 180
           YHF+ D+ L VGDTLFSLGCG+IFE ++AEMFESLEKI+SF DKTHIYFGHEYTENNA F
Sbjct: 121 YHFIEDYLLFVGDTLFSLGCGKIFEGNFAEMFESLEKIRSFPDKTHIYFGHEYTENNARF 180

Query: 181 ALSCDPHNLELQKYCSKVKSMRSQNLYTNPSTISLEKKVNPFLRIENTSLRKNLNMENAS 240
           ALSCDPHNLELQ+YCSKVKS+R++NLYTNPS ISLEKKVNPFLR  +  LRKNL+ME+AS
Sbjct: 181 ALSCDPHNLELQQYCSKVKSLRTKNLYTNPSMISLEKKVNPFLRTRDPILRKNLHMEDAS 240

Query: 241 NLAVFTELRIRKNQSK 256
           NLAVFTELRIRK+Q K
Sbjct: 241 NLAVFTELRIRKDQFK 256


Species: Candidatus Liberibacter solanacearum
Genus: Candidatus Liberibacter
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria
>gi|227823240|ref|YP_002827212.1| putative glyoxalase II [Sinorhizobium fredii NGR234] Length = 256 Back     alignment and organism information
>gi|222149971|ref|YP_002550928.1| glyoxalase II [Agrobacterium vitis S4] Length = 256 Back     alignment and organism information
>gi|15966417|ref|NP_386770.1| putative hydroxyacylglutathione hydrolase (glyoxalase II) (GLX II) protein [Sinorhizobium meliloti 1021] Length = 256 Back     alignment and organism information
>gi|159185823|ref|NP_356997.2| glyoxalase II [Agrobacterium tumefaciens str. C58] Length = 256 Back     alignment and organism information
>gi|150397750|ref|YP_001328217.1| hydroxyacylglutathione hydrolase [Sinorhizobium medicae WSM419] Length = 256 Back     alignment and organism information
>gi|332716404|ref|YP_004443870.1| putative glyoxalase II [Agrobacterium sp. H13-3] Length = 256 Back     alignment and organism information
>gi|163759934|ref|ZP_02167018.1| putative hydroxyacylglutathione hydrolase (glyoxalase ii) (glx ii) protein [Hoeflea phototrophica DFL-43] Length = 247 Back     alignment and organism information
>gi|86359395|ref|YP_471287.1| hydroxyacylgluthatione hydrolase protein [Rhizobium etli CFN 42] Length = 256 Back     alignment and organism information
>gi|218517124|ref|ZP_03513964.1| hydroxyacylgluthatione hydrolase protein [Rhizobium etli 8C-3] Length = 256 Back     alignment and organism information

Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch

Conserved Domains in CDD Database Detected by RPS-BLAST

IdentityAlignment graphLength Definition E-value
Target256 glyoxalase II [Candidatus Liberibacter asiaticus str. p
TIGR03413248 TIGR03413, GSH_gloB, hydroxyacylglutathione hydrolase 7e-83
PLN02398329 PLN02398, PLN02398, hydroxyacylglutathione hydrolase 5e-59
PRK10241251 PRK10241, PRK10241, hydroxyacylglutathione hydrolase; P 4e-43
PLN02469258 PLN02469, PLN02469, hydroxyacylglutathione hydrolase 8e-39
COG0491252 COG0491, GloB, Zn-dependent hydrolases, including glyox 6e-20
KOG0813265 KOG0813, KOG0813, KOG0813, Glyoxylase [General function 3e-46
smart00849183 smart00849, Lactamase_B, Metallo-beta-lactamase superfa 2e-22
PLN02962251 PLN02962, PLN02962, hydroxyacylglutathione hydrolase 8e-07
KOG0814237 KOG0814, KOG0814, KOG0814, Glyoxylase [General function 4e-13
pfam00753148 pfam00753, Lactamase_B, Metallo-beta-lactamase superfam 1e-10
>gnl|CDD|163252 TIGR03413, GSH_gloB, hydroxyacylglutathione hydrolase Back     alignment and domain information
>gnl|CDD|178020 PLN02398, PLN02398, hydroxyacylglutathione hydrolase Back     alignment and domain information
>gnl|CDD|182327 PRK10241, PRK10241, hydroxyacylglutathione hydrolase; Provisional Back     alignment and domain information
>gnl|CDD|178088 PLN02469, PLN02469, hydroxyacylglutathione hydrolase Back     alignment and domain information
>gnl|CDD|30837 COG0491, GloB, Zn-dependent hydrolases, including glyoxylases [General function prediction only] Back     alignment and domain information
>gnl|CDD|36031 KOG0813, KOG0813, KOG0813, Glyoxylase [General function prediction only] Back     alignment and domain information
>gnl|CDD|129082 smart00849, Lactamase_B, Metallo-beta-lactamase superfamily Back     alignment and domain information
>gnl|CDD|178547 PLN02962, PLN02962, hydroxyacylglutathione hydrolase Back     alignment and domain information
>gnl|CDD|36032 KOG0814, KOG0814, KOG0814, Glyoxylase [General function prediction only] Back     alignment and domain information
>gnl|CDD|144377 pfam00753, Lactamase_B, Metallo-beta-lactamase superfamily Back     alignment and domain information

Conserved Domains in CDD Database Detected by HHsearch

IdentityAlignment graphLength Definition Probability
Target 256 glyoxalase II [Candidatus Liberibacter asiaticus str. p
TIGR03413248 GSH_gloB hydroxyacylglutathione hydrolase. Members of t 100.0
PRK10241251 hydroxyacylglutathione hydrolase; Provisional 100.0
KOG0813265 consensus 100.0
KOG0814237 consensus 100.0
smart00849183 Lactamase_B Metallo-beta-lactamase superfamily. Apart f 99.94
COG0491252 GloB Zn-dependent hydrolases, including glyoxylases [Ge 99.89
PRK11539754 hypothetical protein; Provisional 99.13
COG2333293 ComEC Predicted hydrolase (metallo-beta-lactamase super 99.03
PRK02113252 putative hydrolase; Provisional 98.87
COG2220258 Predicted Zn-dependent hydrolases of the beta-lactamase 98.07
PRK04286294 hypothetical protein; Provisional 97.93
TIGR02649304 true_RNase_BN ribonuclease BN; InterPro: IPR013469 Prot 93.57
PRK11921395 metallo-beta-lactamase/flavodoxin domain-containing pro 99.73
COG0426388 FpaA Uncharacterized flavoproteins [Energy production a 99.7
PRK05452 479 anaerobic nitric oxide reductase flavorubredoxin; Provi 99.67
pfam00753148 Lactamase_B Metallo-beta-lactamase superfamily. 99.63
COG0595 555 mRNA degradation ribonucleases J1/J2 (metallo-beta-lact 99.17
TIGR00649 593 MG423 conserved hypothetical protein; InterPro: IPR0046 99.15
PRK00055259 ribonuclease Z; Reviewed 99.11
PRK11244250 phnP carbon-phosphorus lyase complex accessory protein; 98.91
TIGR03307249 PhnP phosphonate metabolism protein PhnP. This family o 98.82
TIGR03675 630 arCOG00543 arCOG01782 universal archaeal KH-domain/beta 98.77
COG1236 427 YSH1 Predicted exonuclease of the beta-lactamase fold i 98.65
PRK05184302 pyrroloquinoline quinone biosynthesis protein PqqB; Pro 98.57
PRK00685228 metal-dependent hydrolase; Provisional 98.55
TIGR02651327 RNase_Z ribonuclease Z; InterPro: IPR013471 All tRNA mo 98.39
COG1782 637 Predicted metal-dependent RNase, consists of a metallo- 98.29
pfam02112323 PDEase_II cAMP phosphodiesterases class-II. 97.91
COG2015 655 Alkyl sulfatase and related hydrolases [Secondary metab 97.8
KOG4736302 consensus 97.59
KOG1136 501 consensus 97.1
KOG1361 481 consensus 96.81
KOG1137 668 consensus 96.4
COG2248304 Predicted hydrolase (metallo-beta-lactamase superfamily 96.18
TIGR02650277 RNase_Z_T_toga ribonuclease Z, Thermotoga type; InterPr 94.45
COG1237259 Metal-dependent hydrolases of the beta-lactamase superf 98.95
COG1235269 PhnP Metal-dependent hydrolases of the beta-lactamase s 98.36
PRK02126334 ribonuclease Z; Provisional 98.16
COG1234292 ElaC Metal-dependent hydrolases of the beta-lactamase s 97.96
KOG1135 764 consensus 96.82
PRK11709355 putative L-ascorbate 6-phosphate lactonase; Provisional 97.66
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase Back     alignment and domain information
>PRK10241 hydroxyacylglutathione hydrolase; Provisional Back     alignment and domain information
>KOG0813 consensus Back     alignment and domain information
>KOG0814 consensus Back     alignment and domain information
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily Back     alignment and domain information
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only] Back     alignment and domain information
>PRK11539 hypothetical protein; Provisional Back     alignment and domain information
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only] Back     alignment and domain information
>PRK02113 putative hydrolase; Provisional Back     alignment and domain information
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only] Back     alignment and domain information
>PRK04286 hypothetical protein; Provisional Back     alignment and domain information
>TIGR02649 true_RNase_BN ribonuclease BN; InterPro: IPR013469 Proteins in this entry include ribonuclease BN of Escherichia coli (strain K-12) and closely related proteins believed to be equivalent in function Back     alignment and domain information
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional Back     alignment and domain information
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion] Back     alignment and domain information
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional Back     alignment and domain information
>pfam00753 Lactamase_B Metallo-beta-lactamase superfamily Back     alignment and domain information
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair] Back     alignment and domain information
>TIGR00649 MG423 conserved hypothetical protein; InterPro: IPR004613 This is a family of conserved hypothetical proteins, the members of which contain an ATP-binding domain at the N-terminal end of the protein Back     alignment and domain information
>PRK00055 ribonuclease Z; Reviewed Back     alignment and domain information
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional Back     alignment and domain information
>TIGR03307 PhnP phosphonate metabolism protein PhnP Back     alignment and domain information
>TIGR03675 arCOG00543 arCOG01782 universal archaeal KH-domain/beta-lactamase-domain protein Back     alignment and domain information
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional Back     alignment and domain information
>PRK00685 metal-dependent hydrolase; Provisional Back     alignment and domain information
>TIGR02651 RNase_Z ribonuclease Z; InterPro: IPR013471 All tRNA molecules are synthesised as long precursors with extra sequence at both the 5' and 3' ends, which undergo several processing steps to form the mature tRNA molecule Back     alignment and domain information
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only] Back     alignment and domain information
>pfam02112 PDEase_II cAMP phosphodiesterases class-II Back     alignment and domain information
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>KOG4736 consensus Back     alignment and domain information
>KOG1136 consensus Back     alignment and domain information
>KOG1361 consensus Back     alignment and domain information
>KOG1137 consensus Back     alignment and domain information
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only] Back     alignment and domain information
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type; InterPro: IPR013470 All tRNA molecules are synthesised as long precursors with extra sequence at both the 5' and 3' ends, which undergo several processing steps to form the mature tRNA molecule Back     alignment and domain information
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only] Back     alignment and domain information
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only] Back     alignment and domain information
>PRK02126 ribonuclease Z; Provisional Back     alignment and domain information
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only] Back     alignment and domain information
>KOG1135 consensus Back     alignment and domain information
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional Back     alignment and domain information

Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch

Homologous Structures Detected by PSI-BLAST against Nonredundant Database

IdentityAlignment graphLength Definition E-value
Target256 glyoxalase II [Candidatus Liberibacter asiaticus str. p
1xm8_A254 X-Ray Structure Of Glyoxalase Ii From Arabidopsis T 5e-51
1qh3_A260 Human Glyoxalase Ii With Cacodylate And Acetate Ion 7e-45
2qed_A258 Crystal Structure Of Salmonella Thyphimurium Lt2 Gl 6e-40
2p18_A311 Crystal Structure Of The Leishmania Infantum Glyoxa 3e-21
2gcu_A245 X-Ray Structure Of Gene Product From Arabidopsis Th 1e-08
3r2u_A 466 2.1 Angstrom Resolution Crystal Structure Of Metall 5e-08
2xf4_A210 Crystal Structure Of Salmonella Enterica Serovar Ty 3e-17
2zwr_A207 Crystal Structure Of Ttha1623 From Thermus Thermoph 1e-09
>gi|56554604|pdb|1XM8|A Chain A, X-Ray Structure Of Glyoxalase Ii From Arabidopsis Thaliana Gene At2g31350 Length = 254 Back     alignment and structure
 Score =  205 bits (521), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 100/249 (40%), Positives = 140/249 (56%), Gaps = 1/249 (0%)

Query: 8   ISLYHDNFCILIHNHKYRLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRANLN 67
           +    DN+  ++H+        +D  +   I   L+  G  LT+I NTHHH DHT  NL 
Sbjct: 6   VPCLKDNYAYILHDEDTGTVGVVDPSEAEPIIDSLKRSGRNLTYILNTHHHYDHTGGNLE 65

Query: 68  LKKFFNCTIFGPLEESSKIPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMNDH 127
           LK  +   + G   +  +IPGID  L DGD + F  H + ++ TPGHT GHI  +F    
Sbjct: 66  LKDRYGAKVIGSAMDKDRIPGIDMALKDGDKWMFAGHEVHVMDTPGHTKGHISLYFPGSR 125

Query: 128 FLCVGDTLFSLGCGRIFEDSYAEMFESLEKIKSFSDKTHIYFGHEYTENNAYFALSCDPH 187
            +  GDT+FSL CG++FE +  +M  SL+KI S  D T IY GHEYT +N+ FALS +P+
Sbjct: 126 AIFTGDTMFSLSCGKLFEGTPKQMLASLQKITSLPDDTSIYCGHEYTLSNSKFALSLEPN 185

Query: 188 NLELQKYCSKVKSMRSQNLYTNPSTISLEKKVNPFLRIENTSLRKNLNM-ENASNLAVFT 246
           N  LQ Y + V  +RS+ L T P+T+ +EK  NPFLR  NT +R+ L + E A       
Sbjct: 186 NEVLQSYAAHVAELRSKKLPTIPTTVKMEKACNPFLRSSNTDIRRALRIPEAADEAEALG 245

Query: 247 ELRIRKNQS 255
            +R  K+  
Sbjct: 246 IIRKAKDDF 254


gi|6137437|pdb|1QH3|A Chain A, Human Glyoxalase Ii With Cacodylate And Acetate Ions Present In The Active Site Length = 260 Back     alignment and structure
>gi|158430160|pdb|2QED|A Chain A, Crystal Structure Of Salmonella Thyphimurium Lt2 Glyoxalase Ii Length = 258 Back     alignment and structure
>gi|165760938|pdb|2P18|A Chain A, Crystal Structure Of The Leishmania Infantum Glyoxalase Ii Length = 311 Back     alignment and structure
>gi|99032459|pdb|2GCU|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana At1g53580 Length = 245 Back     alignment and structure
>gi|326634640|pdb|3R2U|A Chain A, 2.1 Angstrom Resolution Crystal Structure Of Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp. Aureus Col Length = 466 Back     alignment and structure
>gi|301598408|pdb|2XF4|A Chain A, Crystal Structure Of Salmonella Enterica Serovar Typhimurium Ycbl Length = 210 Back     alignment and structure
gi|260656160|pdb|2ZWR|A Chain A, Crystal Structure Of Ttha1623 From Thermus Thermophilus Hb8 Length = 207 Back     alignment and structure

Homologous Structures in PDB70 Database Detected by RPS-BLAST

IdentityAlignment graphLength Definition E-value
Target256 glyoxalase II [Candidatus Liberibacter asiaticus str. p
1xm8_A254 Glyoxalase II; structural genomics, protein structure i 9e-49
1qh5_A260 Glyoxalase II, protein (hydroxyacylglutathione hydrolas 1e-48
2qed_A258 Hydroxyacylglutathione hydrolase; metallo-B- lactamase 1e-36
2p18_A311 Glyoxalase II; metalloprotein, beta sandwich, alpha-hel 2e-33
2xf4_A210 Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salm 1e-28
2gcu_A245 Putative hydroxyacylglutathione hydrolase 3; ethylmalon 3e-20
2zwr_A207 Metallo-beta-lactamase superfamily protein; hydrolase; 6e-17
1jjt_A228 IMP-1 metallo beta-lactamase; metallo-beta-lactamase in 2e-20
2vw8_A303 PA1000, PQSE; quinolone signal response protein, signal 3e-20
2whg_A230 VIM-4 metallo-beta-lactamase; hydrolase, alpha-beta/BET 3e-18
3l6n_A219 Metallo-beta-lactamase; zinc, hydolase, antibiotics res 3e-18
1k07_A263 FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alph 6e-18
3adr_A261 Putative uncharacterized protein ST1585; quorum sensing 2e-17
2gmn_A274 Metallo-beta-lactamase; hydrolase; 1.40A {Bradyrhizobiu 5e-15
1sml_A269 Protein (penicillinase); metallo-beta-lactamase, antibi 5e-15
1ko3_A230 VIM-2 metallo-beta-lactamase; alpha-beta/BETA-alpha fol 5e-15
3iog_A227 Beta-lactamase; hydrolase, antibiotic resistance, metal 2e-14
1m2x_A223 Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fol 2e-14
1a7t_A232 Metallo-beta-lactamase; hydrolase (beta-lactamase), zin 2e-12
2q0i_A303 Quinolone signal response protein; quorum sensing, pseu 3e-12
1mqo_A227 Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolas 4e-12
2yz3_A266 Metallo-beta-lactamase; enzyme-inhibitor complex, hydro 1e-11
1vme_A 410 Flavoprotein; TM0755, structural genomics, JCSG, protei 5e-11
2q9u_A 414 A-type flavoprotein; flavodoxin like, beta lactamase li 7e-11
1e5d_A 402 Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DII 2e-10
3dha_A254 N-acyl homoserine lactone hydrolase; zinc bimetallohydr 9e-10
2p97_A201 Hypothetical protein; structural genomics, joint center 9e-10
2fhx_A246 SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiot 1e-09
1ycg_A 398 Nitric oxide reductase; DIIRON site, oxidoreductase; HE 1e-09
1x8h_A228 Beta-lactamase; hydrolase; 1.60A {Aeromonas hydrophila} 6e-09
2ohh_A 404 Type A flavoprotein FPRA; beta-lactamase like domain, f 5e-08
1ztc_A221 Hypothetical protein TM0894; structural genomics, PSI, 9e-07
3hnn_A262 Putative diflavin flavoprotein A 5; PSI-2, protein stru 5e-06
2r2d_A276 AGR_PTI_140P, Zn-dependent hydrolases; lactonase, N-acy 1e-05
1p9e_A331 Methyl parathion hydrolase; Zn containing; 2.40A {Pseud 2e-04
2zo4_A317 Metallo-beta-lactamase family protein; hydrolase; 2.10A 1e-06
>1xm8_A Glyoxalase II; structural genomics, protein structure initiative, CESG, AT2G31350, metallo-hydrolase, zinc/iron binuclear center; 1.74A {Arabidopsis thaliana} SCOP: d.157.1.2 PDB: 2q42_A Length = 254 Back     alignment and structure
 Score =  188 bits (478), Expect = 9e-49
 Identities = 99/248 (39%), Positives = 141/248 (56%), Gaps = 1/248 (0%)

Query: 8   ISLYHDNFCILIHNHKYRLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRANLN 67
           +    DN+  ++H+        +D  +   I   L+  G  LT+I NTHHH DHT  NL 
Sbjct: 6   VPCLKDNYAYILHDEDTGTVGVVDPSEAEPIIDSLKRSGRNLTYILNTHHHYDHTGGNLE 65

Query: 68  LKKFFNCTIFGPLEESSKIPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMNDH 127
           LK  +   + G   +  +IPGID  L DGD + F  H + ++ TPGHT GHI  +F    
Sbjct: 66  LKDRYGAKVIGSAMDKDRIPGIDMALKDGDKWMFAGHEVHVMDTPGHTKGHISLYFPGSR 125

Query: 128 FLCVGDTLFSLGCGRIFEDSYAEMFESLEKIKSFSDKTHIYFGHEYTENNAYFALSCDPH 187
            +  GDT+FSL CG++FE +  +M  SL+KI S  D T IY GHEYT +N+ FALS +P+
Sbjct: 126 AIFTGDTMFSLSCGKLFEGTPKQMLASLQKITSLPDDTSIYCGHEYTLSNSKFALSLEPN 185

Query: 188 NLELQKYCSKVKSMRSQNLYTNPSTISLEKKVNPFLRIENTSLRKNLNMENASN-LAVFT 246
           N  LQ Y + V  +RS+ L T P+T+ +EK  NPFLR  NT +R+ L +  A++      
Sbjct: 186 NEVLQSYAAHVAELRSKKLPTIPTTVKMEKACNPFLRSSNTDIRRALRIPEAADEAEALG 245

Query: 247 ELRIRKNQ 254
            +R  K+ 
Sbjct: 246 IIRKAKDD 253


>1qh5_A Glyoxalase II, protein (hydroxyacylglutathione hydrolase); metallo-hydrolase; HET: GTT GBP; 1.45A {Homo sapiens} SCOP: d.157.1.2 PDB: 1qh3_A* Length = 260 Back     alignment and structure
>2qed_A Hydroxyacylglutathione hydrolase; metallo-B- lactamase superfamily; 1.45A {Salmonella typhimurium LT2} SCOP: d.157.1.2 Length = 258 Back     alignment and structure
>2p18_A Glyoxalase II; metalloprotein, beta sandwich, alpha-helical domain, hydrolase; HET: SPD; 1.80A {Leishmania infantum} PDB: 2p1e_A* Length = 311 Back     alignment and structure
>2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella enterica} Length = 210 Back     alignment and structure
>2gcu_A Putative hydroxyacylglutathione hydrolase 3; ethylmalonic encephalopathy, ETHE1, structural genomics, protein structure initiative; 1.48A {Arabidopsis thaliana} Length = 245 Back     alignment and structure
>2zwr_A Metallo-beta-lactamase superfamily protein; hydrolase; 2.20A {Thermus thermophilus} Length = 207 Back     alignment and structure
>1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor, succinic acid inhibitor, hydrolase; HET: BDS; 1.80A {Pseudomonas aeruginosa} SCOP: d.157.1.1 PDB: 1dd6_A* 1vgn_A* 2doo_A* 1wup_A 1wuo_A 1jje_A* 1ddk_A Length = 228 Back     alignment and structure
>2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein, SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A 2q0i_A 3dh8_A* Length = 303 Back     alignment and structure
>2whg_A VIM-4 metallo-beta-lactamase; hydrolase, alpha-beta/BETA-alpha fold; HET: FLC; 1.90A {Pseudomonas aeruginosa} PDB: 2wrs_A* 1ko3_A 1ko2_A Length = 230 Back     alignment and structure
>3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance, hydrolase; 1.65A {Chryseobacterium indologenes} Length = 219 Back     alignment and structure
>1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two monomers PER assymmetric UNIT., hydrolase; HET: GOL; 1.65A {Fluoribacter gormanii} SCOP: d.157.1.1 PDB: 1jt1_A* 1l9y_A Length = 263 Back     alignment and structure
>3adr_A Putative uncharacterized protein ST1585; quorum sensing, quinolone signal, metallo-beta-lactamase FOL conserved hypothetical protein; HET: EPE; 1.80A {Sulfolobus tokodaii} Length = 261 Back     alignment and structure
>2gmn_A Metallo-beta-lactamase; hydrolase; 1.40A {Bradyrhizobium japonicum usda 110} SCOP: d.157.1.1 Length = 274 Back     alignment and structure
>1sml_A Protein (penicillinase); metallo-beta-lactamase, antibiotic resistance, binuclear zinc, hydrolase; 1.70A {Stenotrophomonas maltophilia} SCOP: d.157.1.1 PDB: 2aio_A* 2fm6_A 2fu6_A 2fu7_A* 2fu8_A* 2fu9_A* 2gfj_A* 2gfk_A* 2h6a_A 2hb9_A* 2qdt_A* 2qjs_A 2qin_A Length = 269 Back     alignment and structure
>1ko3_A VIM-2 metallo-beta-lactamase; alpha-beta/BETA-alpha fold, hydrolase; 1.91A {Pseudomonas aeruginosa} SCOP: d.157.1.1 PDB: 1ko2_A Length = 230 Back     alignment and structure
>3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding, periplasm,; HET: SDF; 1.41A {Aeromonas hydrophila} PDB: 1x8i_A 3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A Length = 227 Back     alignment and structure
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1 Length = 223 Back     alignment and structure
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A* Length = 232 Back     alignment and structure
>2q0i_A Quinolone signal response protein; quorum sensing, pseudomonas quinolone signal, PQS, metall- beta-lactamase, iron, phosphodiesterase; 1.57A {Pseudomonas aeruginosa} SCOP: d.157.1.14 PDB: 2q0j_A 3dh8_A* Length = 303 Back     alignment and structure
>1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT; 1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A 1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A 3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A 2bfz_A 2bg6_A 2bga_A ... Length = 227 Back     alignment and structure
>2yz3_A Metallo-beta-lactamase; enzyme-inhibitor complex, hydrolase; HET: M5P; 2.30A {Pseudomonas putida} SCOP: d.157.1.1 Length = 266 Back     alignment and structure
>1vme_A Flavoprotein; TM0755, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; HET: MSE; 1.80A {Thermotoga maritima} SCOP: c.23.5.1 d.157.1.3 Length = 410 Back     alignment and structure
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis} Length = 414 Back     alignment and structure
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3 Length = 402 Back     alignment and structure
>3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase, quorum quenching, alternative binding site, product complex; HET: C6L GOL; 0.95A {Bacillus thuringiensis serovarkurstaki} PDB: 3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A Length = 254 Back     alignment and structure
>2p97_A Hypothetical protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.157.1.12 Length = 201 Back     alignment and structure
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistance, structure, hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa} Length = 246 Back     alignment and structure
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A* Length = 398 Back     alignment and structure
>1x8h_A Beta-lactamase; hydrolase; 1.60A {Aeromonas hydrophila} SCOP: d.157.1.1 PDB: 3fai_A 1x8i_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A Length = 228 Back     alignment and structure
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidoreductase; HET: FMN; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2ohi_A* 2ohj_A* Length = 404 Back     alignment and structure
>1ztc_A Hypothetical protein TM0894; structural genomics, PSI, protein structure initiative, joint center for structural genomics, JCSG; HET: MSE; 2.10A {Thermotoga maritima} SCOP: d.157.1.11 Length = 221 Back     alignment and structure
>3hnn_A Putative diflavin flavoprotein A 5; PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, NSR435A, DFA5; 1.80A {Nostoc SP} Length = 262 Back     alignment and structure
>2r2d_A AGR_PTI_140P, Zn-dependent hydrolases; lactonase, N-acyl hompserine lactone, DI-nuclear zinc center, quorum quenching, AIIB, phosphate; HET: PO4; 1.75A {Agrobacterium tumefaciens} Length = 276 Back     alignment and structure
>1p9e_A Methyl parathion hydrolase; Zn containing; 2.40A {Pseudomonas SP} SCOP: d.157.1.5 Length = 331 Back     alignment and structure
>2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus thermophilus HB8} Length = 317 Back     alignment and structure

Homologous Structures in PDB70 Database Detected by HHsearch

IdentityAlignment graphLength Definition Probability
Target256 glyoxalase II [Candidatus Liberibacter asiaticus str. p
1xm8_A254 Glyoxalase II; structural genomics, protein structure i 100.0
2qed_A258 Hydroxyacylglutathione hydrolase; metallo-B- lactamase 100.0
1qh5_A260 Glyoxalase II, protein (hydroxyacylglutathione hydrolas 100.0
2p18_A311 Glyoxalase II; metalloprotein, beta sandwich, alpha-hel 100.0
2gcu_A245 Putative hydroxyacylglutathione hydrolase 3; ethylmalon 100.0
2xf4_A210 Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salm 100.0
2zwr_A207 Metallo-beta-lactamase superfamily protein; hydrolase; 100.0
2vw8_A303 PA1000, PQSE; quinolone signal response protein, signal 99.97
1sml_A269 Protein (penicillinase); metallo-beta-lactamase, antibi 99.93
3hnn_A262 Putative diflavin flavoprotein A 5; PSI-2, protein stru 99.89
2cfu_A 658 SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1 99.89
2zo4_A317 Metallo-beta-lactamase family protein; hydrolase; 2.10A 99.96
1jjt_A228 IMP-1 metallo beta-lactamase; metallo-beta-lactamase in 99.96
1k07_A263 FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alph 99.95
1a7t_A232 Metallo-beta-lactamase; hydrolase (beta-lactamase), zin 99.95
2gmn_A274 Metallo-beta-lactamase; hydrolase; 1.40A {Bradyrhizobiu 99.95
3l6n_A219 Metallo-beta-lactamase; zinc, hydolase, antibiotics res 99.95
1m2x_A223 Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fol 99.94
2whg_A230 VIM-4 metallo-beta-lactamase; hydrolase, alpha-beta/BET 99.94
2yz3_A266 Metallo-beta-lactamase; enzyme-inhibitor complex, hydro 99.93
3iog_A227 Beta-lactamase; hydrolase, antibiotic resistance, metal 99.93
1mqo_A227 Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolas 99.92
2fhx_A246 SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiot 99.92
3adr_A261 Putative uncharacterized protein ST1585; quorum sensing 99.92
2p97_A201 Hypothetical protein; putative metal-dependent hydrolas 99.92
2q9u_A414 A-type flavoprotein; flavodoxin like, beta lactamase li 99.92
2ohh_A404 Type A flavoprotein FPRA; beta-lactamase like domain, f 99.91
1ycg_A398 Nitric oxide reductase; DIIRON site, oxidoreductase; HE 99.91
1vme_A410 Flavoprotein; TM0755, structural genomics, JCSG, protei 99.9
3dha_A254 N-acyl homoserine lactone hydrolase; zinc bimetallohydr 99.9
1e5d_A402 Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DII 99.88
3esh_A280 Protein similar to metal-dependent hydrolase; structura 99.84
2r2d_A276 AGR_PTI_140P, Zn-dependent hydrolases; lactonase, N-acy 99.82
1p9e_A331 Methyl parathion hydrolase; Zn containing; 2.40A {Pseud 99.81
1ztc_A221 Hypothetical protein TM0894; structural genomics, PSI, 99.81
2bib_A 547 CBPE, teichoic acid phosphorylcholine esterase/ choline 99.29
3g1p_A258 Protein PHNP; C-P lyase, phosphodiesterase, phosphonate 99.15
3bk2_A 562 RNAse J, metal dependent hydrolase; endoribonuclease, e 99.44
3af5_A 651 Putative uncharacterized protein PH1404; archaeal CPSF, 99.26
2i7t_A 459 Cleavage and polyadenylation specificity factor 73 kDa 99.24
2az4_A 429 Hypothetical protein EF2904; structural genomics, PSI, 99.22
1zkp_A268 Hypothetical protein BA1088; zinc binding protein, stru 99.17
2xr1_A 640 Cleavage and polyadenylation specificity factor 1 subun 99.08
2i7x_A 717 Protein CFT2; polyadenylation, metallo-B-lactamase, PRE 99.04
3kl7_A235 Putative metal-dependent hydrolase; structural genomics 98.77
1vjn_A220 Zn-dependent hydrolase of metallo-beta-lactamase superf 98.03
2p4z_A284 Metal-dependent hydrolases of the beta-lactamase superf 99.39
3h3e_A267 Uncharacterized protein TM1679; structural genomics, su 98.69
2cbn_A306 Ribonuclease Z; phosphodiesterase beta lactamase tRNAse 98.68
3jxp_A321 Coenzyme PQQ synthesis protein B; alpha-beta protein, P 98.44
1y44_A320 Ribonuclease Z; zinc-dependent metal hydrolase; HET: ME 98.31
3md7_A293 Beta-lactamase-like; ssgcid, hydrolase, structural geno 97.88
2e7y_A280 TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, struc 97.73
2wyl_A360 L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59 98.21
3bv6_A379 Metal-dependent hydrolase; metallo protein, beta-lactam 98.09
>1xm8_A Glyoxalase II; structural genomics, protein structure initiative, CESG, AT2G31350, metallo-hydrolase, zinc/iron binuclear center; 1.74A {Arabidopsis thaliana} SCOP: d.157.1.2 PDB: 2q42_A Back     alignment and structure
Probab=100.00  E-value=0  Score=555.52  Aligned_cols=252  Identities=40%  Similarity=0.687  Sum_probs=244.2

Q ss_pred             CEE-EEEEECCCEEEEEEECCCCEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHCHHHHHHHHCCCEEEECCCC
Q ss_conf             145-3011057626999988998499986999899999999859964399985898433000001111000101200012
Q gi|254780583|r    4 LNI-AISLYHDNFCILIHNHKYRLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLEE   82 (256)
Q Consensus         4 ~~i-~ip~~~DNy~YlI~d~~t~~~viIDpgd~~~i~~~l~~~~~~i~~Il~TH~H~DHigg~~~l~~~~~~~v~~~~~~   82 (256)
                      |.| +||+|+|||+|||.|+.|++|++||||++++++++++++++++++|++||+|+||++|+.+|++.++++++++..+
T Consensus         1 M~i~~ip~l~dNy~Yli~d~~t~~~~vIDp~~~~~vl~~l~~~~~~l~~Il~TH~H~DH~~g~~~l~~~~~~~i~~~~~~   80 (254)
T 1xm8_A            1 MQIELVPCLKDNYAYILHDEDTGTVGVVDPSEAEPIIDSLKRSGRNLTYILNTHHHYDHTGGNLELKDRYGAKVIGSAMD   80 (254)
T ss_dssp             CEEEEEEETTTEEEEEEECTTTCCEEEECCSSHHHHHHHHHHHTCCCCEEECSSCCHHHHTTHHHHHHHHCCEEEEEGGG
T ss_pred             CEEEEEEEECCEEEEEEEECCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHCCCEEEEECCC
T ss_conf             97899743425789999989999899998978299999999779916899944788655266899988639838973332


Q ss_pred             CCCCCCCCEEEEEHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf             34323322033101001111222331025544567522686146543137704304613446663156776654420134
Q gi|254780583|r   83 SSKIPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMNDHFLCVGDTLFSLGCGRIFEDSYAEMFESLEKIKSFS  162 (256)
Q Consensus        83 ~~~i~~~~~~l~dgd~i~ig~~~~~vi~tPGHT~g~i~~~~~~~~~lFtGDtLF~~g~Gr~~~G~~~~l~~Sl~kl~~Lp  162 (256)
                      ...++++++.++||+.+++|+.+++|++|||||+||+|||++++++||||||||.+||||+|+|++++|++||+||++||
T Consensus        81 ~~~~~~~~~~~~dgd~i~~g~~~~~vi~tPGHT~ghv~~~~~~~~~lftGDtlf~~g~Gr~~~g~~~~~~~Sl~kl~~Lp  160 (254)
T 1xm8_A           81 KDRIPGIDMALKDGDKWMFAGHEVHVMDTPGHTKGHISLYFPGSRAIFTGDTMFSLSCGKLFEGTPKQMLASLQKITSLP  160 (254)
T ss_dssp             GGGSTTEEEEECTTCEEEETTEEEEEEECCSSSSSCEEEEEGGGTEEEEETTEETTEECCCSSSCHHHHHHHHHHHHTSC
T ss_pred             CCCCCCCCEEECCCCEEEECCEEEEEEECCCCCCCCEEEEECCCCEEEECCEEEECCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf             24587898783489736788878999972798877568997575378856888745888889999999999999997089


Q ss_pred             CCCEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHCCCCC-CCH
Q ss_conf             4650201665204588987750234478999999999888578986678789998728224678989999738899-898
Q gi|254780583|r  163 DKTHIYFGHEYTENNAYFALSCDPHNLELQKYCSKVKSMRSQNLYTNPSTISLEKKVNPFLRIENTSLRKNLNMEN-ASN  241 (256)
Q Consensus       163 ~~t~i~pGHeYt~~nl~Fa~~~~p~n~~~~~~~~~~~~~~~~~~~tvPstl~~Ek~~NPflr~~~~~~~~~~~~~~-~~~  241 (256)
                      ++|+||||||||.+|++|+.+++|+|+.++++.++++++|+++.||+||||++||++|||||++++.+++.++... .++
T Consensus       161 ~~t~v~pgH~y~~~n~~f~~~~~~~n~~~~~~~~~~~~~~~~~~~tvpstl~~E~~~Npflr~~~~~~~~~l~~~~~~~~  240 (254)
T 1xm8_A          161 DDTSIYCGHEYTLSNSKFALSLEPNNEVLQSYAAHVAELRSKKLPTIPTTVKMEKACNPFLRSSNTDIRRALRIPEAADE  240 (254)
T ss_dssp             TTCEEEESBCCHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTCCCCCEEHHHHHHHCGGGCTTCHHHHHHHTCCTTCCH
T ss_pred             CCCEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHCCCCCCCH
T ss_conf             65657225655433301254407876889999999999987799957753899987495467898899998589989998


Q ss_pred             HHHHHHHHHHHHCC
Q ss_conf             99999999867328
Q gi|254780583|r  242 LAVFTELRIRKNQS  255 (256)
Q Consensus       242 ~~~f~~lR~~kd~f  255 (256)
                      .++|.+||++||+|
T Consensus       241 ~~~f~~LR~~kd~f  254 (254)
T 1xm8_A          241 AEALGIIRKAKDDF  254 (254)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHCCC
T ss_conf             99999999846689



>2qed_A Hydroxyacylglutathione hydrolase; metallo-B- lactamase superfamily; 1.45A {Salmonella typhimurium LT2} SCOP: d.157.1.2 Back     alignment and structure
>1qh5_A Glyoxalase II, protein (hydroxyacylglutathione hydrolase); metallo-hydrolase; HET: GTT GBP; 1.45A {Homo sapiens} SCOP: d.157.1.2 PDB: 1qh3_A* Back     alignment and structure
>2p18_A Glyoxalase II; metalloprotein, beta sandwich, alpha-helical domain, hydrolase; HET: SPD; 1.80A {Leishmania infantum} PDB: 2p1e_A* Back     alignment and structure
>2gcu_A Putative hydroxyacylglutathione hydrolase 3; ethylmalonic encephalopathy, ETHE1, structural genomics, protein structure initiative; 1.48A {Arabidopsis thaliana} Back     alignment and structure
>2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella enterica} Back     alignment and structure
>2zwr_A Metallo-beta-lactamase superfamily protein; hydrolase; 2.20A {Thermus thermophilus} PDB: 2zzi_A Back     alignment and structure
>2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein, SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A 2q0i_A 3dh8_A* Back     alignment and structure
>1sml_A Protein (penicillinase); metallo-beta-lactamase, antibiotic resistance, binuclear zinc, hydrolase; 1.70A {Stenotrophomonas maltophilia} SCOP: d.157.1.1 PDB: 2aio_A* 2fm6_A 2fu6_A 2fu7_A* 2fu8_A* 2fu9_A* 2gfj_A* 2gfk_A* 2h6a_A 2hb9_A* 2qdt_A* 2qjs_A 2qin_A Back     alignment and structure
>3hnn_A Putative diflavin flavoprotein A 5; PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, NSR435A, DFA5; 1.80A {Nostoc SP} Back     alignment and structure
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A* Back     alignment and structure
>2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus thermophilus HB8} Back     alignment and structure
>1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor, succinic acid inhibitor, hydrolase; HET: BDS; 1.80A {Pseudomonas aeruginosa} SCOP: d.157.1.1 PDB: 1dd6_A* 1vgn_A* 2doo_A* 1wup_A 1wuo_A 1jje_A* 1ddk_A Back     alignment and structure
>1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two monomers PER assymmetric UNIT., hydrolase; HET: GOL; 1.65A {Fluoribacter gormanii} SCOP: d.157.1.1 PDB: 1jt1_A* 1l9y_A Back     alignment and structure
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A* Back     alignment and structure
>2gmn_A Metallo-beta-lactamase; hydrolase; 1.40A {Bradyrhizobium japonicum usda 110} SCOP: d.157.1.1 Back     alignment and structure
>3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance, hydrolase; 1.65A {Chryseobacterium indologenes} Back     alignment and structure
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1 Back     alignment and structure
>2whg_A VIM-4 metallo-beta-lactamase; hydrolase, alpha-beta/BETA-alpha fold; HET: FLC; 1.90A {Pseudomonas aeruginosa} PDB: 2wrs_A* 1ko3_A 1ko2_A Back     alignment and structure
>2yz3_A Metallo-beta-lactamase; enzyme-inhibitor complex, hydrolase; HET: M5P; 2.30A {Pseudomonas putida} SCOP: d.157.1.1 Back     alignment and structure
>3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding, periplasm,; HET: SDF; 1.41A {Aeromonas hydrophila} PDB: 1x8i_A 3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A Back     alignment and structure
>1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT; 1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A 1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A 3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A 2bfz_A 2bg6_A 2bga_A ... Back     alignment and structure
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistance, structure, hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa} Back     alignment and structure
>3adr_A Putative uncharacterized protein ST1585; quorum sensing, quinolone signal, metallo-beta-lactamase FOL conserved hypothetical protein; HET: EPE; 1.80A {Sulfolobus tokodaii} Back     alignment and structure
>2p97_A Hypothetical protein; putative metal-dependent hydrolase, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.157.1.12 Back     alignment and structure
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis} Back     alignment and structure
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidoreductase; HET: FMN; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2ohi_A* 2ohj_A* Back     alignment and structure
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A* Back     alignment and structure
>1vme_A Flavoprotein; TM0755, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; HET: MSE; 1.80A {Thermotoga maritima} SCOP: c.23.5.1 d.157.1.3 Back     alignment and structure
>3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase, quorum quenching, alternative binding site, product complex; HET: C6L GOL; 0.95A {Bacillus thuringiensis serovarkurstaki} PDB: 3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A Back     alignment and structure
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3 Back     alignment and structure
>3esh_A Protein similar to metal-dependent hydrolase; structural genomics, PSI-2, protein structure initiative; 2.50A {Staphylococcus aureus subsp} Back     alignment and structure
>2r2d_A AGR_PTI_140P, Zn-dependent hydrolases; lactonase, N-acyl hompserine lactone, DI-nuclear zinc center, quorum quenching, AIIB, phosphate; HET: PO4; 1.75A {Agrobacterium tumefaciens} Back     alignment and structure
>1p9e_A Methyl parathion hydrolase; Zn containing; 2.40A {Pseudomonas SP} SCOP: d.157.1.5 Back     alignment and structure
>1ztc_A Hypothetical protein TM0894; structural genomics, PSI, protein structure initiative, joint center for structural genomics, JCSG; HET: MSE; 2.10A {Thermotoga maritima} SCOP: d.157.1.11 Back     alignment and structure
>2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline binding protein; PCE, hydrolase; HET: PC BTB; 1.92A {Streptococcus pneumoniae} SCOP: b.109.1.1 d.157.1.8 PDB: 1wra_A* Back     alignment and structure
>3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate utilization, alkylphosphonate uptake; 1.40A {Escherichia coli} Back     alignment and structure
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus HB27} PDB: 3bk1_A* Back     alignment and structure
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A* Back     alignment and structure
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A Back     alignment and structure
>2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Enterococcus faecalis V583} SCOP: d.157.1.10 Back     alignment and structure
>1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein structure initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9 Back     alignment and structure
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei} Back     alignment and structure
>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10 Back     alignment and structure
>3kl7_A Putative metal-dependent hydrolase; structural genomics, joint center for structural genomics, JCSG; 2.30A {Parabacteroides distasonis atcc 8503} Back     alignment and structure
>1vjn_A Zn-dependent hydrolase of metallo-beta-lactamase superfamily TM0207; structural genomics, JCSG, PSI, protein structure initiative; 2.00A {Thermotoga maritima} SCOP: d.157.1.4 Back     alignment and structure
>2p4z_A Metal-dependent hydrolases of the beta-lactamase superfamily II; 2.10A {Thermoanaerobacter tengcongensis MB4} Back     alignment and structure
>3h3e_A Uncharacterized protein TM1679; structural genomics, surface entropy reduction, ISFI, beta- lactamase superfamily, PSI-2; 2.75A {Thermotoga maritima} Back     alignment and structure
>2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z, hydrolase, metal- binding, endonuclease, tRNA processing, zinc; 2.9A {Escherichia coli} SCOP: d.157.1.7 Back     alignment and structure
>3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas putida KT2440} PDB: 1xto_A Back     alignment and structure
>1y44_A Ribonuclease Z; zinc-dependent metal hydrolase; HET: MES; 2.10A {Bacillus subtilis} SCOP: d.157.1.7 PDB: 2fk6_A* Back     alignment and structure
>3md7_A Beta-lactamase-like; ssgcid, hydrolase, structural genomics, seattle structural genomics center for infectious disease; HET: 5GP TLA; 1.27A {Brucella melitensis biovar abortus} Back     alignment and structure
>2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.97A {Thermotoga maritima} SCOP: d.157.1.7 PDB: 1ww1_A Back     alignment and structure
>2wyl_A L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59A {Escherichia coli} PDB: 2wym_A* Back     alignment and structure
>3bv6_A Metal-dependent hydrolase; metallo protein, beta-lactamase like fold, MCSG, structural genomics, PSI-2; 1.80A {Vibrio cholerae o1 biovar eltor str} Back     alignment and structure

Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch

Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST

IdentityAlignment graphLength Definition E-value
Target 256 glyoxalase II [Candidatus Liberibacter asiaticus str. p
d1xm8a_254 d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hy 3e-49
d2qeda1251 d.157.1.2 (A:1-251) Glyoxalase II (hydroxyacylglutathio 2e-38
d1qh5a_260 d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hy 2e-32
d2aioa1266 d.157.1.1 (A:23-311) Zn metallo-beta-lactamase {Xanthom 9e-18
d1jjta_220 d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas a 2e-14
d2gmna1264 d.157.1.1 (A:29-292) Zn metallo-beta-lactamase {Bradyrh 3e-14
d2q0ia1298 d.157.1.14 (A:1-298) Quinolone signal response protein 3e-12
d1k07a_262 d.157.1.1 (A:) Zn metallo-beta-lactamase {Fluoribacter 9e-12
d1e5da2249 d.157.1.3 (A:2-250) Rubredoxin oxygen:oxidoreductase (R 7e-07
d1m2xa_219 d.157.1.1 (A:) Zn metallo-beta-lactamase {Chryseobacter 2e-06
d1ko3a_230 d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas a 8e-14
d2p97a1200 d.157.1.12 (A:1-200) Hypothetical protein Ava3068 {Anab 4e-12
d1mqoa_221 d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacillus cere 4e-10
d1x8ha_228 d.157.1.1 (A:) Zn metallo-beta-lactamase {Aeromonas hyd 3e-09
d1znba_230 d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacteroides f 4e-09
d1ycga2249 d.157.1.3 (A:2-250) Nitric oxide reductase N-terminal d 3e-07
d1vmea2250 d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755, N-ter 4e-07
d1ztca1207 d.157.1.11 (A:1-207) Hypothetical protein TM0894 {Therm 0.001
>d1xm8a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 254 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Glyoxalase II (hydroxyacylglutathione hydrolase)
domain: Glyoxalase II (hydroxyacylglutathione hydrolase)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
 Score =  188 bits (479), Expect = 3e-49
 Identities = 99/248 (39%), Positives = 141/248 (56%), Gaps = 1/248 (0%)

Query: 8   ISLYHDNFCILIHNHKYRLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRANLN 67
           +    DN+  ++H+        +D  +   I   L+  G  LT+I NTHHH DHT  NL 
Sbjct: 6   VPCLKDNYAYILHDEDTGTVGVVDPSEAEPIIDSLKRSGRNLTYILNTHHHYDHTGGNLE 65

Query: 68  LKKFFNCTIFGPLEESSKIPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMNDH 127
           LK  +   + G   +  +IPGID  L DGD + F  H + ++ TPGHT GHI  +F    
Sbjct: 66  LKDRYGAKVIGSAMDKDRIPGIDMALKDGDKWMFAGHEVHVMDTPGHTKGHISLYFPGSR 125

Query: 128 FLCVGDTLFSLGCGRIFEDSYAEMFESLEKIKSFSDKTHIYFGHEYTENNAYFALSCDPH 187
            +  GDT+FSL CG++FE +  +M  SL+KI S  D T IY GHEYT +N+ FALS +P+
Sbjct: 126 AIFTGDTMFSLSCGKLFEGTPKQMLASLQKITSLPDDTSIYCGHEYTLSNSKFALSLEPN 185

Query: 188 NLELQKYCSKVKSMRSQNLYTNPSTISLEKKVNPFLRIENTSLRKNLNMENASN-LAVFT 246
           N  LQ Y + V  +RS+ L T P+T+ +EK  NPFLR  NT +R+ L +  A++      
Sbjct: 186 NEVLQSYAAHVAELRSKKLPTIPTTVKMEKACNPFLRSSNTDIRRALRIPEAADEAEALG 245

Query: 247 ELRIRKNQ 254
            +R  K+ 
Sbjct: 246 IIRKAKDD 253


>d2qeda1 d.157.1.2 (A:1-251) Glyoxalase II (hydroxyacylglutathione hydrolase) {Salmonella typhimurium [TaxId: 90371]} Length = 251 Back     information, alignment and structure
>d1qh5a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Human (Homo sapiens) [TaxId: 9606]} Length = 260 Back     information, alignment and structure
>d2aioa1 d.157.1.1 (A:23-311) Zn metallo-beta-lactamase {Xanthomonas maltophilia [TaxId: 40324]} Length = 266 Back     information, alignment and structure
>d1jjta_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, IMP-1 [TaxId: 287]} Length = 220 Back     information, alignment and structure
>d2gmna1 d.157.1.1 (A:29-292) Zn metallo-beta-lactamase {Bradyrhizobium japonicum [TaxId: 375]} Length = 264 Back     information, alignment and structure
>d2q0ia1 d.157.1.14 (A:1-298) Quinolone signal response protein PqsE {Pseudomonas aeruginosa [TaxId: 287]} Length = 298 Back     information, alignment and structure
>d1k07a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Fluoribacter gormanii, (Legionella gormanii) FEZ-1 [TaxId: 464]} Length = 262 Back     information, alignment and structure
>d1e5da2 d.157.1.3 (A:2-250) Rubredoxin oxygen:oxidoreductase (ROO), N-terminal domain {Desulfovibrio gigas [TaxId: 879]} Length = 249 Back     information, alignment and structure
>d1m2xa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Chryseobacterium meningosepticum, carbapenemase BLAB-1 [TaxId: 238]} Length = 219 Back     information, alignment and structure
>d1ko3a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, VIM-2 [TaxId: 287]} Length = 230 Back     information, alignment and structure
>d2p97a1 d.157.1.12 (A:1-200) Hypothetical protein Ava3068 {Anabaena variabilis [TaxId: 1172]} Length = 200 Back     information, alignment and structure
>d1mqoa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacillus cereus [TaxId: 1396]} Length = 221 Back     information, alignment and structure
>d1x8ha_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Aeromonas hydrophila, CphA [TaxId: 644]} Length = 228 Back     information, alignment and structure
>d1znba_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacteroides fragilis [TaxId: 817]} Length = 230 Back     information, alignment and structure
>d1ycga2 d.157.1.3 (A:2-250) Nitric oxide reductase N-terminal domain {Moorella thermoacetica [TaxId: 1525]} Length = 249 Back     information, alignment and structure
>d1vmea2 d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 250 Back     information, alignment and structure
>d1ztca1 d.157.1.11 (A:1-207) Hypothetical protein TM0894 {Thermotoga maritima [TaxId: 2336]} Length = 207 Back     information, alignment and structure

Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch

IdentityAlignment graphLength Definition Probability
Target256 glyoxalase II [Candidatus Liberibacter asiaticus str. p
d1xm8a_254 Glyoxalase II (hydroxyacylglutathione hydrolase) {Thale 100.0
d2qeda1251 Glyoxalase II (hydroxyacylglutathione hydrolase) {Salmo 100.0
d1qh5a_260 Glyoxalase II (hydroxyacylglutathione hydrolase) {Human 100.0
d2gmna1264 Zn metallo-beta-lactamase {Bradyrhizobium japonicum [Ta 99.96
d2q0ia1298 Quinolone signal response protein PqsE {Pseudomonas aer 99.96
d1k07a_262 Zn metallo-beta-lactamase {Fluoribacter gormanii, (Legi 99.96
d1jjta_220 Zn metallo-beta-lactamase {Pseudomonas aeruginosa, IMP- 99.95
d1x8ha_228 Zn metallo-beta-lactamase {Aeromonas hydrophila, CphA [ 99.94
d2p97a1200 Hypothetical protein Ava3068 {Anabaena variabilis [TaxI 99.93
d1mqoa_221 Zn metallo-beta-lactamase {Bacillus cereus [TaxId: 1396 99.93
d1ko3a_230 Zn metallo-beta-lactamase {Pseudomonas aeruginosa, VIM- 99.93
d1m2xa_219 Zn metallo-beta-lactamase {Chryseobacterium meningosept 99.92
d1znba_230 Zn metallo-beta-lactamase {Bacteroides fragilis [TaxId: 99.92
d1e5da2249 Rubredoxin oxygen:oxidoreductase (ROO), N-terminal doma 99.91
d1vmea2250 ROO-like flavoprotein TM0755, N-terminal domain {Thermo 99.85
d1ztca1207 Hypothetical protein TM0894 {Thermotoga maritima [TaxId 99.82
d1p9ea_294 Methyl parathion hydrolase {Pseudomonas sp. WBC-3 [TaxI 99.82
d2aioa1266 Zn metallo-beta-lactamase {Xanthomonas maltophilia [Tax 99.95
d1ycga2249 Nitric oxide reductase N-terminal domain {Moorella ther 99.9
d2cfua2505 Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 28 99.89
d2az4a1183 Hypothetical protein EF2904 {Enterococcus faecalis [Tax 99.42
d2dkfa1 431 Putative RNA-degradation protein TTHA0252 {Thermus ther 99.39
d2i7xa1 514 Cleavage factor two protein 2, CFT2 {Baker's yeast (Sac 99.27
d1zkpa1244 Hypothetical protein BA1088 (BAS1016) {Bacillus anthrac 99.13
d1wraa1305 Teichoic acid phosphorylcholine esterase Pce (LytD), N- 99.12
d2i7ta1 451 Cleavage and polyadenylation specificity factor subunit 99.08
d1y44a1307 Ribonuclease Z (RNase Z) {Bacillus subtilis [TaxId: 142 98.77
d1vjna_209 Hypothetical protein TM0207 {Thermotoga maritima [TaxId 98.07
d2cbna1305 Ribonuclease Z (RNase Z) {Escherichia coli [TaxId: 562] 98.65
d1xtoa_304 Coenzyme PQQ synthesis protein B, PqqB {Pseudomonas put 98.02
d2e7ya1280 Ribonuclease Z (RNase Z) {Thermotoga maritima [TaxId: 2 97.85
>d1xm8a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Glyoxalase II (hydroxyacylglutathione hydrolase)
domain: Glyoxalase II (hydroxyacylglutathione hydrolase)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00  E-value=0  Score=560.38  Aligned_cols=252  Identities=40%  Similarity=0.687  Sum_probs=244.4

Q ss_pred             CEE-EEEEECCCEEEEEEECCCCEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHCHHHHHHHHCCCEEEECCCC
Q ss_conf             145-3011057626999988998499986999899999999859964399985898433000001111000101200012
Q gi|254780583|r    4 LNI-AISLYHDNFCILIHNHKYRLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLEE   82 (256)
Q Consensus         4 ~~i-~ip~~~DNy~YlI~d~~t~~~viIDpgd~~~i~~~l~~~~~~i~~Il~TH~H~DHigg~~~l~~~~~~~v~~~~~~   82 (256)
                      |+| +||+|+|||+|||.|+++++|++||||+++++++++++.++++.+|++||+|+||++|+.+|++.++++++++..+
T Consensus         1 M~i~~ip~~~dNy~Yli~d~~t~~avvIDPg~~~~i~~~l~~~~~~l~~Il~TH~H~DH~~g~~~l~~~~~~~v~~~~~~   80 (254)
T d1xm8a_           1 MQIELVPCLKDNYAYILHDEDTGTVGVVDPSEAEPIIDSLKRSGRNLTYILNTHHHYDHTGGNLELKDRYGAKVIGSAMD   80 (254)
T ss_dssp             CEEEEEEETTTEEEEEEECTTTCCEEEECCSSHHHHHHHHHHHTCCCCEEECSSCCHHHHTTHHHHHHHHCCEEEEEGGG
T ss_pred             CEEEEEEEECCEEEEEEEECCCCEEEEECCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHCCCCEEECCCC
T ss_conf             97899724434789999989999899997989399999999779950588636575312172699875159708951421


Q ss_pred             CCCCCCCCEEEEEHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf             34323322033101001111222331025544567522686146543137704304613446663156776654420134
Q gi|254780583|r   83 SSKIPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMNDHFLCVGDTLFSLGCGRIFEDSYAEMFESLEKIKSFS  162 (256)
Q Consensus        83 ~~~i~~~~~~l~dgd~i~ig~~~~~vi~tPGHT~g~i~~~~~~~~~lFtGDtLF~~g~Gr~~~G~~~~l~~Sl~kl~~Lp  162 (256)
                      ...++.+++.++|||++.+|+.+++|++|||||+||||||++++++||||||||.+||||+|+|++++||+||+||++||
T Consensus        81 ~~~~~~~~~~l~dgd~i~lg~~~i~vl~TPGHT~ghi~~~~~~~~~lftGDtLf~~g~Gr~~~g~~~~~~~sl~kl~~Lp  160 (254)
T d1xm8a_          81 KDRIPGIDMALKDGDKWMFAGHEVHVMDTPGHTKGHISLYFPGSRAIFTGDTMFSLSCGKLFEGTPKQMLASLQKITSLP  160 (254)
T ss_dssp             GGGSTTEEEEECTTCEEEETTEEEEEEECCSSSSSCEEEEEGGGTEEEEETTEETTEECCCSSSCHHHHHHHHHHHHTSC
T ss_pred             CCCCCCCCEEECCCCEEEECCCEEEEEECCCCCCCCEEEEECCCCEEEECCEEEEECCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf             24587898885588742235848999514678888669997365357727788741478643546999999999998099


Q ss_pred             CCCEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHCCCCC-CCH
Q ss_conf             4650201665204588987750234478999999999888578986678789998728224678989999738899-898
Q gi|254780583|r  163 DKTHIYFGHEYTENNAYFALSCDPHNLELQKYCSKVKSMRSQNLYTNPSTISLEKKVNPFLRIENTSLRKNLNMEN-ASN  241 (256)
Q Consensus       163 ~~t~i~pGHeYt~~nl~Fa~~~~p~n~~~~~~~~~~~~~~~~~~~tvPstl~~Ek~~NPflr~~~~~~~~~~~~~~-~~~  241 (256)
                      ++|+||||||||.+|++|+.+++|+|+.++++.++++++|+++.||+||||++||++|||||++++.+++.+++.. .++
T Consensus       161 d~t~v~~gH~y~~~n~~f~~~~~~~n~~l~~~~~~~~~~~~~~~~tvPstl~~E~~~Npflr~~~~~i~~~l~~~~~~~~  240 (254)
T d1xm8a_         161 DDTSIYCGHEYTLSNSKFALSLEPNNEVLQSYAAHVAELRSKKLPTIPTTVKMEKACNPFLRSSNTDIRRALRIPEAADE  240 (254)
T ss_dssp             TTCEEEESBCCHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTCCCCCEEHHHHHHHCGGGCTTCHHHHHHHTCCTTCCH
T ss_pred             CCCEEECCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHCCCCCCCH
T ss_conf             11277116776501344456527753334357999999875479866632798987293246998899998489999998


Q ss_pred             HHHHHHHHHHHHCC
Q ss_conf             99999999867328
Q gi|254780583|r  242 LAVFTELRIRKNQS  255 (256)
Q Consensus       242 ~~~f~~lR~~kd~f  255 (256)
                      .++|.+||++||+|
T Consensus       241 ~~~f~~LR~~kd~f  254 (254)
T d1xm8a_         241 AEALGIIRKAKDDF  254 (254)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHCCC
T ss_conf             99999999856699



>d2qeda1 d.157.1.2 (A:1-251) Glyoxalase II (hydroxyacylglutathione hydrolase) {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure