254780624
ubiquinone/menaquinone biosynthesis methyltransferase
| GeneID in NCBI database: | 8209624 | Locus tag: | CLIBASIA_02555 |
| Protein GI in NCBI database: | 254780624 | Protein Accession: | YP_003065037.1 |
| Gene range: | +(647012, 647809) | Protein Length: | 265aa |
| Gene description: | ubiquinone/menaquinone biosynthesis methyltransferase | ||
| COG prediction: | [H] Methylase involved in ubiquinone/menaquinone biosynthesis | ||
| KEGG prediction: | ubiE; ubiquinone/menaquinone biosynthesis methyltransferase (EC:2.1.1.-); K03183 ubiquinone/menaquinone biosynthesis methyltransferase [EC:2.1.1.-] | ||
| SEED prediction: | Ubiquinone/menaquinone biosynthesis methyltransferase UbiE (EC 2.1.1.-) | ||
| Pathway involved in KEGG: | Ubiquinone and other terpenoid-quinone biosynthesis [PATH:las00130] | ||
| Subsystem involved in SEED: | Ubiquinone Biosynthesis | ||
| sequence | sequence profile | ||
Prediction of Local Sequence Properties
| Source | Summary | Result |
|---|
|
|
Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
| Identity | Alignment graph | Length | Definition | E-value | |
| Target | 265 | ubiquinone/menaquinone biosynthesis methyltransferase [ | |||
| 254780869 | 559 | beta-lactamase domain-containing protein [Candidat | 0.024 | ||
| 254780635 | 412 | hypothetical protein CLIBASIA_02610 [Candidatus Li | 0.043 |
| >gi|254780869|ref|YP_003065282.1| beta-lactamase domain-containing protein [Candidatus Liberibacter asiaticus str. psy62] Length = 559 | Back alignment |
|---|
Score = 30.8 bits (68), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 29/56 (51%)
Query: 144 CTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIP 199
C ++F ++P + LV +I I+K L+ + + + ++D+WSF +P
Sbjct: 39 CGVSFPKDDLPGVDLVFPDITFIMKERKNLMAIFITHAHEDHYGALHDLWSFLHVP 94
|
| >gi|254780635|ref|YP_003065048.1| hypothetical protein CLIBASIA_02610 [Candidatus Liberibacter asiaticus str. psy62] Length = 412 | Back alignment |
|---|
Score = 30.0 bits (66), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 36 RVSHRYDVMNDLMSLGLH----RFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEA 91
R HR + ++ ++ G H W + + TN+ ++ Y D+ TG R E
Sbjct: 156 RKLHRANGIDTNITTGYHVIEFLLWGQDLKTNVREPGNRPYTDFDIGNCTGGHCRRRVEY 215
Query: 92 SDNRSQIVVADINNEMLSVGRD-RAFKENLQD 122
S+I+V+D+ M + G D +A K+ ++D
Sbjct: 216 LKVVSKILVSDLEEMMKAWGPDGQATKDLMKD 247
|
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
| Identity | Alignment graph | Length | Definition | Round | E-value |
| Target | 265 | ubiquinone/menaquinone biosynthesis methyltransferase [ | |||
| 315121825 | 258 | ubiquinone/menaquinone biosynthesis methyltransferase [ | 1 | 1e-129 | |
| 222147313 | 258 | ubiquinone/menaquinone biosynthesis methyltransferase [ | 1 | 2e-98 | |
| 116250140 | 258 | ubiquinone/menaquinone biosynthesis methyltransferase [ | 1 | 4e-98 | |
| 327188619 | 507 | ubiquinone/menaquinone biosynthesis methyltransferase p | 1 | 7e-98 | |
| 241207317 | 258 | ubiquinone/menaquinone biosynthesis methyltransferase [ | 1 | 9e-98 | |
| 222084646 | 258 | ubiquinone/menaquinone biosynthesis methyltransferase p | 1 | 1e-97 | |
| 190890022 | 258 | ubiquinone/menaquinone biosynthesis methyltransferase [ | 1 | 1e-97 | |
| 86356011 | 258 | ubiquinone/menaquinone biosynthesis methyltransferase [ | 1 | 2e-97 | |
| 325291754 | 258 | ubiquinone/menaquinone biosynthesis methyltransferase [ | 1 | 8e-97 | |
| 209551934 | 258 | ubiquinone/menaquinone biosynthesis methyltransferase [ | 1 | 1e-96 |
| >gi|315121825|ref|YP_004062314.1| ubiquinone/menaquinone biosynthesis methyltransferase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 258 | Back alignment and organism information |
|---|
Score = 464 bits (1194), Expect = e-129, Method: Compositional matrix adjust.
Identities = 214/257 (83%), Positives = 239/257 (92%)
Query: 1 MTKDRFDSDNNMKTSYGFREVPEEEKQNMVNHVFSRVSHRYDVMNDLMSLGLHRFWKEAM 60
MTKDRFDSD MKTSYGFREV EEEKQNMVNHVFSRVSHRYD+MNDLMSLGLHRFWKEAM
Sbjct: 1 MTKDRFDSDEKMKTSYGFREVLEEEKQNMVNHVFSRVSHRYDIMNDLMSLGLHRFWKEAM 60
Query: 61 VTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENL 120
VT LNP+KS YRVLD+AGGTGDVAFRIAEASD +SQIVVADIN+ MLSVGRDR+FKENL
Sbjct: 61 VTALNPQKSVHYRVLDIAGGTGDVAFRIAEASDKKSQIVVADINSAMLSVGRDRSFKENL 120
Query: 121 QDCITFIEANAETLPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSE 180
QD ITF+EA+AE LPF++NSFD+CTLAFGIRNMPHI LVLQEIYRILK GGRLL+LEFSE
Sbjct: 121 QDNITFVEADAERLPFKSNSFDSCTLAFGIRNMPHIKLVLQEIYRILKYGGRLLILEFSE 180
Query: 181 VQGPVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNV 240
VQ P+ +KIY++WSF VIPQ+G+ +AGD+EPYQYL+ESIRRFPNQQDFA +IS+A FS+V
Sbjct: 181 VQEPLLRKIYNLWSFSVIPQIGKLVAGDDEPYQYLVESIRRFPNQQDFAEIISSANFSSV 240
Query: 241 SFTNYTNGVVALHSGWK 257
SFTNYTNG+VALHSGWK
Sbjct: 241 SFTNYTNGIVALHSGWK 257
|
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|222147313|ref|YP_002548270.1| ubiquinone/menaquinone biosynthesis methyltransferase [Agrobacterium vitis S4] Length = 258 | Back alignment and organism information |
|---|
Score = 363 bits (931), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 165/258 (63%), Positives = 199/258 (77%)
Query: 1 MTKDRFDSDNNMKTSYGFREVPEEEKQNMVNHVFSRVSHRYDVMNDLMSLGLHRFWKEAM 60
M R +D M+TSYGFR+V E EKQ +VN VF +V+ RYD+MND+MS G+HR WK+A+
Sbjct: 1 MVASRTSADGGMETSYGFRDVAEGEKQGLVNDVFHKVAKRYDIMNDVMSAGMHRVWKDAL 60
Query: 61 VTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENL 120
+ LNPRK Y+VLDVAGGTGD+AFRI EAS + V DIN ML VG++RA K+ L
Sbjct: 61 IAALNPRKDAGYKVLDVAGGTGDIAFRIIEASRRLAHATVLDINGSMLGVGQERAQKKGL 120
Query: 121 QDCITFIEANAETLPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSE 180
D +TF+EANAE LPFEAN FDA T+AFGIRN+P I + L E YR+LK GGRLLVLEFSE
Sbjct: 121 SDNLTFVEANAEALPFEANQFDAYTIAFGIRNVPRIDVALSEAYRVLKRGGRLLVLEFSE 180
Query: 181 VQGPVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNV 240
VQ P+ + YD WSFK IP+ G+ I G+ EPYQYL+ESIR+FPNQQDFAA+I+ AGFS V
Sbjct: 181 VQMPLLDRFYDQWSFKAIPRFGKMITGEAEPYQYLVESIRKFPNQQDFAAMITKAGFSKV 240
Query: 241 SFTNYTNGVVALHSGWKC 258
SFTNYT G+ ALHSGWK
Sbjct: 241 SFTNYTGGIAALHSGWKI 258
|
Species: Agrobacterium vitis Genus: Agrobacterium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|116250140|ref|YP_765978.1| ubiquinone/menaquinone biosynthesis methyltransferase [Rhizobium leguminosarum bv. viciae 3841] Length = 258 | Back alignment and organism information |
|---|
Score = 362 bits (928), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 164/258 (63%), Positives = 200/258 (77%)
Query: 1 MTKDRFDSDNNMKTSYGFREVPEEEKQNMVNHVFSRVSHRYDVMNDLMSLGLHRFWKEAM 60
M++ R +D M+TSYGFREVP+ +KQ +VN VF +V+ RYD+MND+MS+G+HR WK+AM
Sbjct: 1 MSESRTSADGGMETSYGFREVPDGQKQGLVNQVFHKVAKRYDIMNDVMSMGMHRAWKDAM 60
Query: 61 VTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENL 120
++ LNPRK Y+VLDVAGGTGD+AFRI EAS ++ V DIN ML VG +RA K+ L
Sbjct: 61 ISALNPRKEPGYKVLDVAGGTGDIAFRIVEASGRQAHATVLDINGSMLGVGAERAEKKKL 120
Query: 121 QDCITFIEANAETLPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSE 180
+TF+EANAE LPFEA SFDA T+AFGIRN+P I L E YR+LK GGRLLVLEFSE
Sbjct: 121 SGNLTFVEANAEELPFEAGSFDAYTIAFGIRNVPRIDAALSEAYRVLKRGGRLLVLEFSE 180
Query: 181 VQGPVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNV 240
V P+ KIYD WSF IPQ G+ I GD EPYQYL+ESIR+FPNQ++FAA+I AGFS V
Sbjct: 181 VDMPLLDKIYDAWSFNAIPQFGKAITGDAEPYQYLVESIRKFPNQENFAAMIRQAGFSRV 240
Query: 241 SFTNYTNGVVALHSGWKC 258
+FTNYT G+ ALHSGWK
Sbjct: 241 TFTNYTGGIAALHSGWKL 258
|
Species: Rhizobium leguminosarum Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|327188619|gb|EGE55829.1| ubiquinone/menaquinone biosynthesis methyltransferase protein [Rhizobium etli CNPAF512] Length = 507 | Back alignment and organism information |
|---|
Score = 361 bits (926), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 166/258 (64%), Positives = 198/258 (76%)
Query: 1 MTKDRFDSDNNMKTSYGFREVPEEEKQNMVNHVFSRVSHRYDVMNDLMSLGLHRFWKEAM 60
M++ R +D M+TSYGFREVP EKQ +VN VF +V+ RYD+MND+MS+GLHR WK+AM
Sbjct: 250 MSESRTSADGGMETSYGFREVPGGEKQGLVNQVFHKVAKRYDIMNDVMSMGLHRVWKDAM 309
Query: 61 VTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENL 120
+ LNPRK Y+VLDVAGGTGD+AFRI EAS ++ V DIN ML VG +RA K+ L
Sbjct: 310 IAALNPRKEPGYKVLDVAGGTGDIAFRIVEASGRQAHATVLDINGSMLGVGAERAEKKKL 369
Query: 121 QDCITFIEANAETLPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSE 180
+TF+EANAE LPFEA SFDA T+AFGIRN+P I + L E YR+LK GGRLLVLEFSE
Sbjct: 370 SANLTFVEANAEELPFEAASFDAYTIAFGIRNVPRIDVALAEAYRVLKRGGRLLVLEFSE 429
Query: 181 VQGPVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNV 240
V P+ KIYD WSF IPQ G+ I GD EPYQYL+ESIR+FPNQ++FAA+I AGFS V
Sbjct: 430 VDMPLLDKIYDAWSFNAIPQFGKAITGDAEPYQYLVESIRKFPNQENFAAMIRQAGFSRV 489
Query: 241 SFTNYTNGVVALHSGWKC 258
S TNYT G+ ALHSGWK
Sbjct: 490 SHTNYTGGIAALHSGWKL 507
|
Species: Rhizobium etli Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|241207317|ref|YP_002978413.1| ubiquinone/menaquinone biosynthesis methyltransferase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 258 | Back alignment and organism information |
|---|
Score = 360 bits (925), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 163/258 (63%), Positives = 200/258 (77%)
Query: 1 MTKDRFDSDNNMKTSYGFREVPEEEKQNMVNHVFSRVSHRYDVMNDLMSLGLHRFWKEAM 60
M++ R +D M+T+YGFREVP+ EKQ++VN VF +V+ RYD+MND+MS+G+HR WK+AM
Sbjct: 1 MSESRTSADGGMETAYGFREVPDGEKQSLVNQVFHKVAKRYDIMNDVMSMGMHRAWKDAM 60
Query: 61 VTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENL 120
++ LNPRK Y+VLDVAGGTGD+AFRI EAS ++ V DIN ML VG +RA K+ L
Sbjct: 61 ISALNPRKEPGYKVLDVAGGTGDIAFRIVEASGRQAHATVLDINGSMLGVGAERAEKKKL 120
Query: 121 QDCITFIEANAETLPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSE 180
+TF+EANAE LPFE SFDA T+AFGIRN+P I L E YR+LK GGRLLVLEFSE
Sbjct: 121 SGNLTFVEANAEELPFETGSFDAYTIAFGIRNVPRIDAALSEAYRVLKRGGRLLVLEFSE 180
Query: 181 VQGPVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNV 240
V P+ KIYD WSF IPQ G+ I GD EPYQYL+ESIR+FPNQ++FAA+I AGFS V
Sbjct: 181 VDMPLLDKIYDAWSFNAIPQFGKAITGDAEPYQYLVESIRKFPNQENFAAMIRQAGFSRV 240
Query: 241 SFTNYTNGVVALHSGWKC 258
+FTNYT G+ ALHSGWK
Sbjct: 241 TFTNYTGGIAALHSGWKL 258
|
Species: Rhizobium leguminosarum Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|222084646|ref|YP_002543175.1| ubiquinone/menaquinone biosynthesis methyltransferase protein [Agrobacterium radiobacter K84] Length = 258 | Back alignment and organism information |
|---|
Score = 360 bits (924), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 164/258 (63%), Positives = 200/258 (77%)
Query: 1 MTKDRFDSDNNMKTSYGFREVPEEEKQNMVNHVFSRVSHRYDVMNDLMSLGLHRFWKEAM 60
M + R +D M+TSYGFREV + EKQ +VN VF +V+ RYD+MND+MS+GLHR WK+AM
Sbjct: 1 MAESRTSADGGMETSYGFREVADGEKQGLVNEVFHKVAKRYDIMNDVMSMGLHRAWKDAM 60
Query: 61 VTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENL 120
++ LNPRK Y+VLDVAGGTGD+AFRI EAS+ + V DIN ML VG +RA K+ L
Sbjct: 61 ISALNPRKDPSYKVLDVAGGTGDIAFRIVEASNRLAHATVLDINGSMLGVGAERAAKKKL 120
Query: 121 QDCITFIEANAETLPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSE 180
D +TF+EANAE LPFE NSFDA T+AFGIRN+P I + L+E YR+LK GGRLLVLEFSE
Sbjct: 121 TDNLTFVEANAEELPFEPNSFDAYTIAFGIRNVPRIDVALKEAYRVLKRGGRLLVLEFSE 180
Query: 181 VQGPVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNV 240
V P+ ++Y+ WSF IPQ G+ I GD EPYQYL+ESIR+FPNQQDFA +I AGFS V
Sbjct: 181 VDLPLLDRVYEAWSFNAIPQFGKAITGDAEPYQYLVESIRKFPNQQDFATMIREAGFSRV 240
Query: 241 SFTNYTNGVVALHSGWKC 258
+FTNYT G+ ALHSGWK
Sbjct: 241 NFTNYTGGIAALHSGWKL 258
|
Species: Agrobacterium tumefaciens Genus: Agrobacterium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|190890022|ref|YP_001976564.1| ubiquinone/menaquinone biosynthesis methyltransferase [Rhizobium etli CIAT 652] Length = 258 | Back alignment and organism information |
|---|
Score = 360 bits (923), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 165/258 (63%), Positives = 198/258 (76%)
Query: 1 MTKDRFDSDNNMKTSYGFREVPEEEKQNMVNHVFSRVSHRYDVMNDLMSLGLHRFWKEAM 60
M++ R +D M+TSYGFREVP EKQ +VN VF +V+ RYD+MND+MS+G+HR WK+AM
Sbjct: 1 MSESRTSADGGMETSYGFREVPGGEKQGLVNQVFHKVAKRYDIMNDVMSMGMHRVWKDAM 60
Query: 61 VTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENL 120
+ LNPRK Y+VLDVAGGTGD+AFRI EAS ++ V DIN ML VG +RA K+ L
Sbjct: 61 IAALNPRKEPGYKVLDVAGGTGDIAFRIVEASGRQAHATVLDINGSMLGVGAERAEKKKL 120
Query: 121 QDCITFIEANAETLPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSE 180
+TF+EANAE LPFEA SFDA T+AFGIRN+P I + L E YR+LK GGRLLVLEFSE
Sbjct: 121 SANLTFVEANAEELPFEAASFDAYTIAFGIRNVPRIDVALAEAYRVLKRGGRLLVLEFSE 180
Query: 181 VQGPVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNV 240
V P+ KIYD WSF IPQ G+ I GD EPYQYL+ESIR+FPNQ++FAA+I AGFS V
Sbjct: 181 VDMPLLDKIYDAWSFNAIPQFGKAITGDAEPYQYLVESIRKFPNQENFAAMIRQAGFSRV 240
Query: 241 SFTNYTNGVVALHSGWKC 258
S TNYT G+ ALHSGWK
Sbjct: 241 SHTNYTGGIAALHSGWKL 258
|
Species: Rhizobium etli Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|86356011|ref|YP_467903.1| ubiquinone/menaquinone biosynthesis methyltransferase [Rhizobium etli CFN 42] Length = 258 | Back alignment and organism information |
|---|
Score = 360 bits (923), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 164/258 (63%), Positives = 198/258 (76%)
Query: 1 MTKDRFDSDNNMKTSYGFREVPEEEKQNMVNHVFSRVSHRYDVMNDLMSLGLHRFWKEAM 60
M++ R +D M+TSYGFREVP EKQ +VN VF +V+ RYD+MND+MS+G+HR WK+AM
Sbjct: 1 MSESRTSADGGMETSYGFREVPGGEKQGLVNQVFHKVAKRYDIMNDVMSMGMHRAWKDAM 60
Query: 61 VTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENL 120
+ LNPRK Y+VLDVAGGTGD+AFRI EAS ++ V DIN ML VG +RA K+ L
Sbjct: 61 IAALNPRKEPGYKVLDVAGGTGDIAFRIVEASGRQAHATVLDINGSMLGVGAERAEKKKL 120
Query: 121 QDCITFIEANAETLPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSE 180
+TF+EANAE LPFEA SFDA T+AFGIRN+P I L E YR+LK GGRLLVLEFSE
Sbjct: 121 SGNLTFVEANAEELPFEAASFDAYTIAFGIRNVPRIDKALSEAYRVLKRGGRLLVLEFSE 180
Query: 181 VQGPVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNV 240
V P+ KIYD WSF IPQ G+ I GD EPYQYL+ESIR+FPNQ++FAA+I AGFS V
Sbjct: 181 VDMPLLDKIYDAWSFNAIPQFGKAITGDAEPYQYLVESIRKFPNQENFAAMIRQAGFSRV 240
Query: 241 SFTNYTNGVVALHSGWKC 258
++TNYT G+ ALHSGWK
Sbjct: 241 TYTNYTGGIAALHSGWKL 258
|
Species: Rhizobium etli Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|325291754|ref|YP_004277618.1| ubiquinone/menaquinone biosynthesis methyltransferase [Agrobacterium sp. H13-3] Length = 258 | Back alignment and organism information |
|---|
Score = 357 bits (917), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 161/258 (62%), Positives = 201/258 (77%)
Query: 1 MTKDRFDSDNNMKTSYGFREVPEEEKQNMVNHVFSRVSHRYDVMNDLMSLGLHRFWKEAM 60
MT R + M+TSYGF +V E +KQ +VN VF +V+ RYD+MND+MS GLHR WK+AM
Sbjct: 1 MTDARTTAQGGMETSYGFHKVDEGKKQGLVNDVFHKVAKRYDIMNDVMSAGLHRLWKDAM 60
Query: 61 VTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENL 120
V++L+PRK Y+VLDVAGGTGD+AFRI EAS+ + V DIN ML+VG +RA K L
Sbjct: 61 VSSLSPRKDASYKVLDVAGGTGDIAFRIVEASNRLAHATVLDINGSMLAVGEERAAKRKL 120
Query: 121 QDCITFIEANAETLPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSE 180
D +TF+EANAE LPFEAN+FDA T+AFGIRN+P I + L+E YR+LK GGRLLVLEFSE
Sbjct: 121 SDNLTFVEANAEELPFEANTFDAYTVAFGIRNVPRIDVALKEAYRVLKRGGRLLVLEFSE 180
Query: 181 VQGPVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNV 240
V+ P+ ++YD WSF IPQ G+ I GD EPYQYL+ESIR+FPNQ+DFA +I +AGFS V
Sbjct: 181 VEMPLLDRVYDAWSFNAIPQFGKMITGDAEPYQYLVESIRKFPNQEDFATMIRSAGFSRV 240
Query: 241 SFTNYTNGVVALHSGWKC 258
++TNYT G+ ALHSGWK
Sbjct: 241 TYTNYTGGIAALHSGWKL 258
|
Species: Agrobacterium sp. H13-3 Genus: Agrobacterium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|209551934|ref|YP_002283851.1| ubiquinone/menaquinone biosynthesis methyltransferase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 258 | Back alignment and organism information |
|---|
Score = 357 bits (916), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 163/258 (63%), Positives = 198/258 (76%)
Query: 1 MTKDRFDSDNNMKTSYGFREVPEEEKQNMVNHVFSRVSHRYDVMNDLMSLGLHRFWKEAM 60
M + R +D M+TSYGFREVP EKQ++VN VF +V+ RYD+MND+MS+G+HR WK+AM
Sbjct: 1 MPESRTSADGGMETSYGFREVPGGEKQDLVNQVFHKVAKRYDIMNDVMSMGMHRAWKDAM 60
Query: 61 VTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENL 120
++ LNPRK YRVLDVAGGTGD+AFRI EAS ++ V DIN ML VG +RA K+ L
Sbjct: 61 ISALNPRKEPGYRVLDVAGGTGDIAFRIVEASGRQAHATVLDINGSMLGVGAERAEKKKL 120
Query: 121 QDCITFIEANAETLPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSE 180
+TF+EANAE LPFE SFDA T+AFGIRN+P I L E YR+LK GGRLLVLEFSE
Sbjct: 121 SGNLTFVEANAEELPFEPASFDAYTIAFGIRNVPRIDAALSEAYRVLKRGGRLLVLEFSE 180
Query: 181 VQGPVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNV 240
V P+ +IYD WSF IPQ G+ I GD EPYQYL+ESIR+FPNQ++FAA+I AGFS V
Sbjct: 181 VDMPLLDRIYDAWSFNAIPQFGKAITGDAEPYQYLVESIRKFPNQENFAAMIRQAGFSRV 240
Query: 241 SFTNYTNGVVALHSGWKC 258
++TNYT G+ ALHSGWK
Sbjct: 241 TYTNYTGGIAALHSGWKL 258
|
Species: Rhizobium leguminosarum Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
| Identity | Alignment graph | Length | Definition | E-value |
| Target | 265 | ubiquinone/menaquinone biosynthesis methyltransferase [ | ||
| PRK00216 | 239 | PRK00216, ubiE, ubiquinone/menaquinone biosynthesis met | 2e-95 | |
| TIGR01934 | 223 | TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosy | 3e-76 | |
| COG2226 | 238 | COG2226, UbiE, Methylase involved in ubiquinone/menaqui | 2e-73 | |
| pfam01209 | 233 | pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase | 3e-69 | |
| TIGR02752 | 231 | TIGR02752, MenG_heptapren, 2-heptaprenyl-1,4-naphthoqui | 6e-46 | |
| PLN02233 | 261 | PLN02233, PLN02233, ubiquinone biosynthesis methyltrans | 3e-27 | |
| TIGR02072 | 240 | TIGR02072, BioC, biotin biosynthesis protein BioC | 1e-07 | |
| PRK05785 | 226 | PRK05785, PRK05785, hypothetical protein; Provisional | 7e-04 | |
| KOG1540 | 296 | KOG1540, KOG1540, KOG1540, Ubiquinone biosynthesis meth | 5e-77 | |
| pfam08241 | 95 | pfam08241, Methyltransf_11, Methyltransferase domain | 3e-15 | |
| PRK08317 | 241 | PRK08317, PRK08317, hypothetical protein; Provisional | 9e-14 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-dependent | 9e-10 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase domain | 7e-09 | |
| KOG4300 | 252 | KOG4300, KOG4300, KOG4300, Predicted methyltransferase | 9e-05 | |
| COG2227 | 243 | COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy | 1e-04 | |
| KOG1269 | 364 | KOG1269, KOG1269, KOG1269, SAM-dependent methyltransfer | 1e-04 | |
| COG2519 | 256 | COG2519, GCD14, tRNA(1-methyladenosine) methyltransfera | 0.003 | |
| KOG1541 | 270 | KOG1541, KOG1541, KOG1541, Predicted protein carboxyl m | 0.003 | |
| PLN02232 | 160 | PLN02232, PLN02232, ubiquinone biosynthesis methyltrans | 7e-11 | |
| PRK11873 | 272 | PRK11873, arsM, arsenite S-adenosylmethyltransferase; R | 5e-05 | |
| PLN02490 | 340 | PLN02490, PLN02490, MPBQ/MSBQ methyltransferase | 2e-10 | |
| COG0500 | 257 | COG0500, SmtA, SAM-dependent methyltransferases [Second | 5e-06 | |
| KOG1663 | 237 | KOG1663, KOG1663, KOG1663, O-methyltransferase [Seconda | 0.001 | |
| COG0144 | 355 | COG0144, Sun, tRNA and rRNA cytosine-C5-methylases [Tra | 0.004 | |
| COG2230 | 283 | COG2230, Cfa, Cyclopropane fatty acid synthase and rela | 2e-04 |
| >gnl|CDD|178932 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 343 bits (883), Expect = 2e-95
Identities = 112/240 (46%), Positives = 158/240 (65%), Gaps = 2/240 (0%)
Query: 18 FREVPEEEKQNMVNHVFSRVSHRYDVMNDLMSLGLHRFWKEAMVTNLNPRKSKDYRVLDV 77
F V EEEKQ V +F ++ +YD+MNDL+S GLHR W+ + L R +VLD+
Sbjct: 1 FMTVAEEEKQEKVAEMFDSIAPKYDLMNDLLSFGLHRVWRRKTIKWLGVRP--GDKVLDL 58
Query: 78 AGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFE 137
A GTGD+A +A+A ++V D + ML+VGR++ L + F++ +AE LPF
Sbjct: 59 ACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFP 118
Query: 138 ANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKV 197
NSFDA T+AFG+RN+P I L+E+YR+LK GGRL++LEFS+ P KK YD + FKV
Sbjct: 119 DNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKV 178
Query: 198 IPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNYTNGVVALHSGWK 257
+P +G+ I+ + E Y YL ESIR FP+Q++ AA++ AGF V + N T G+VALH G+K
Sbjct: 179 LPLIGKLISKNAEAYSYLAESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYK 238
|
Length = 239 |
| >gnl|CDD|162613 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Score = 280 bits (718), Expect = 3e-76
Identities = 100/228 (43%), Positives = 149/228 (65%), Gaps = 5/228 (2%)
Query: 30 VNHVFSRVSHRYDVMNDLMSLGLHRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIA 89
V +F R++ +YD++NDL+S GLHR W+ V + K + +VLDVA GTGD+A +A
Sbjct: 1 VQEMFDRIAPKYDLLNDLLSFGLHRLWRRRAVKLIGVFKGQ--KVLDVACGTGDLAIELA 58
Query: 90 EASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFG 149
+++ +R ++ D ++EML V + ++ I FI+A+AE LPFE NSFDA T+AFG
Sbjct: 59 KSAPDRGKVTGVDFSSEMLEVAKKKSELPL---NIEFIQADAEALPFEDNSFDAVTIAFG 115
Query: 150 IRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLGRFIAGDE 209
+RN+ I L+E+YR+LK GGRL++LEFS+ + KK Y + V+P +G I+ +
Sbjct: 116 LRNVTDIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNA 175
Query: 210 EPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNYTNGVVALHSGWK 257
E Y YL ESIR FP+Q++ AA++ AGF V + + T GV A+H G K
Sbjct: 176 EAYTYLPESIRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. Length = 223 |
| >gnl|CDD|32408 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 270 bits (693), Expect = 2e-73
Identities = 114/241 (47%), Positives = 165/241 (68%), Gaps = 5/241 (2%)
Query: 18 FREVPEEEKQNMVNHVFSRVSHRYDVMNDLMSLGLHRFWKEAMVTNLNPRKSKDYRVLDV 77
F+ V ++EKQ V VF +V+ +YD+MNDLMS GLHR W+ A+++ L + +VLDV
Sbjct: 1 FKMVAKDEKQEKVQKVFDKVAKKYDLMNDLMSFGLHRLWRRALISLLGIKP--GDKVLDV 58
Query: 78 AGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFE 137
A GTGD+A +A++ ++V DI+ ML V R++ K+ +Q+ + F+ +AE LPF
Sbjct: 59 ACGTGDMALLLAKSVGT-GEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLPFP 116
Query: 138 ANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFK- 196
NSFDA T++FG+RN+ I L+E+YR+LK GGRLLVLEFS+ PV +K Y ++ FK
Sbjct: 117 DNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKY 176
Query: 197 VIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNYTNGVVALHSGW 256
V+P +G+ +A D E Y+YL ESIRRFP+Q++ +I AGF V + N T G+VALH G+
Sbjct: 177 VLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVRYENLTFGIVALHRGY 236
Query: 257 K 257
K
Sbjct: 237 K 237
|
Length = 238 |
| >gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family | Back alignment and domain information |
|---|
Score = 256 bits (657), Expect = 3e-69
Identities = 95/232 (40%), Positives = 150/232 (64%), Gaps = 3/232 (1%)
Query: 26 KQNMVNHVFSRVSHRYDVMNDLMSLGLHRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVA 85
K+ V VFS V+ +YD+MND++S G+HR WK+ + + ++ + LDVAGGTGD
Sbjct: 5 KEQRVGDVFSSVASKYDLMNDVISFGIHRLWKDFTMKCMGVKRGN--KFLDVAGGTGDWT 62
Query: 86 FRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACT 145
F +++++ + ++V DIN ML G +A +E + I F++ NAE LPFE +SFD T
Sbjct: 63 FGLSDSAGSSGKVVGLDINENMLKEGEKKAKEEGKYN-IEFLQGNAEELPFEDDSFDIVT 121
Query: 146 LAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLGRFI 205
++FG+RN P VL+E +R+LK GGR++ LEFS+ + P+ + Y+++ V+P +G+
Sbjct: 122 ISFGLRNFPDYLKVLKEAFRVLKPGGRVVCLEFSKPENPLLSQAYELYFKYVMPFMGKMF 181
Query: 206 AGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNYTNGVVALHSGWK 257
A + YQYL ESIR FP+Q+ A++ AGF +V + + T G+ A+H G K
Sbjct: 182 AKSYKSYQYLQESIRDFPDQKTLASMFEKAGFKSVGYESLTGGIAAIHWGIK 233
|
Length = 233 |
| >gnl|CDD|131799 TIGR02752, MenG_heptapren, 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Score = 179 bits (456), Expect = 6e-46
Identities = 83/234 (35%), Positives = 131/234 (55%), Gaps = 3/234 (1%)
Query: 24 EEKQNMVNHVFSRVSHRYDVMNDLMSLGLHRFWKEAMVTNLNPRKSKDYRVLDVAGGTGD 83
E K+ V+ VF ++ +YD MN ++S H+ W++ + +N + LDV GT D
Sbjct: 1 ESKEERVHKVFEKIYKKYDRMNSVISFQRHKKWRKDTMKRMNVQAGT--SALDVCCGTAD 58
Query: 84 VAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDA 143
+ +AEA ++ D + MLSVGR + L + + + NA LPF+ NSFD
Sbjct: 59 WSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHN-VELVHGNAMELPFDDNSFDY 117
Query: 144 CTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLGR 203
T+ FG+RN+P VL+E+YR++K GG+++ LE S+ P FK++Y + ++P G+
Sbjct: 118 VTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGK 177
Query: 204 FIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNYTNGVVALHSGWK 257
A + Y +L ES R FP + A + AGF +V +YT GV A+H G+K
Sbjct: 178 LFAKSYKEYSWLQESTRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. Length = 231 |
| >gnl|CDD|177877 PLN02233, PLN02233, ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 3e-27
Identities = 70/213 (32%), Positives = 117/213 (54%), Gaps = 13/213 (6%)
Query: 33 VFSRVSHRYDVMNDLMSLGLHRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEAS 92
+F+R++ YD +NDL+SLG HR WK M + + K D VLD+ G+GD+AF ++E
Sbjct: 38 LFNRIAPVYDNLNDLLSLGQHRIWKR-MAVSWSGAKMGDR-VLDLCCGSGDLAFLLSEKV 95
Query: 93 DNRSQIVVADINNEMLSVGRDRAFKENLQ-----DCITFIEANAETLPFEANSFDACTLA 147
+ +++ D ++E L+V R + L+ I +IE +A LPF+ FDA T+
Sbjct: 96 GSDGKVMGLDFSSEQLAVAASR---QELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMG 152
Query: 148 FGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYD-MWSFKVIPQLGRFIA 206
+G+RN+ +QE+YR+LK G R+ +L+F++ P + + M V+P +
Sbjct: 153 YGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGL 212
Query: 207 GDEEPYQYLIESIRRFPNQQDFAAVISAAGFSN 239
E Y+YL SI + ++ + AGFS+
Sbjct: 213 AKE--YEYLKSSINEYLTGEELEKLALEAGFSS 243
|
Length = 261 |
| >gnl|CDD|162684 TIGR02072, BioC, biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 1e-07
Identities = 48/223 (21%), Positives = 83/223 (37%), Gaps = 25/223 (11%)
Query: 34 FSRVSHRYDVMNDLMSLGLHRFWKEAMVTNL-NPRKSKDYRVLDVAGGTGDVAFRIAEAS 92
F++ + YD + R + ++ L VLD+ GTG + R
Sbjct: 2 FNKAAKTYDRHAKI-----QREMAKRLLALLKEKGIFIPASVLDIGCGTGYL-TRALLKR 55
Query: 93 DNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFD--ACTLAFGI 150
+++ + DI+ ML+ K L + + FI +AE LP E +SFD LA
Sbjct: 56 FPQAEFIALDISAGMLAQA-----KTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQW 110
Query: 151 RNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIP-----QLGRFI 205
+ + L E+ R+LK GG +L FS ++ + + +L +
Sbjct: 111 CDDL--SQALSELARVLKPGG---LLAFSTFGPGTLHELRQSFGQHGLRYLSLDELKALL 165
Query: 206 AGDEEPYQYLIESIR-RFPNQQDFAAVISAAGFSNVSFTNYTN 247
E E I F + D + G + +S +
Sbjct: 166 KNSFELLTLEEELITLSFDDPLDVLRHLKKTGANGLSSGRTSR 208
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. Length = 240 |
| >gnl|CDD|180257 PRK05785, PRK05785, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 7e-04
Identities = 41/210 (19%), Positives = 79/210 (37%), Gaps = 25/210 (11%)
Query: 30 VNHVFSRVSHRYDVMNDLMSLGLHRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIA 89
+ ++++ YD N +S W+ +V + + +VLDVA G G++++
Sbjct: 11 LQEAYNKIPKAYDRANRFISFNQDVRWRAELVKTILKYCGRPKKVLDVAAGKGELSYHFK 70
Query: 90 EASDNRSQIVVADINNEMLS---VGRDRAFKENLQDCITFIEANAETLPFEANSFDACTL 146
+ + +V D ML V D+ + + E LPF SFD
Sbjct: 71 KVF--KYYVVALDYAENMLKMNLVADDK------------VVGSFEALPFRDKSFDVVMS 116
Query: 147 AFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGP--VFKKIYDMWSFK-VIPQLGR 203
+F + +I V+ E R+ + + F + P V K+ Y + + ++P +
Sbjct: 117 SFALHASDNIEKVIAEFTRVSR-----KQVGFIAMGKPDNVIKRKYLSFYLRYIMPYIAC 171
Query: 204 FIAGDEEPYQYLIESIRRFPNQQDFAAVIS 233
Y+Y+ R P +
Sbjct: 172 LAGAKCRDYKYIYYIYERLPTNSFHREIFE 201
|
Length = 226 |
| >gnl|CDD|36753 KOG1540, KOG1540, KOG1540, Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Score = 283 bits (724), Expect = 5e-77
Identities = 133/253 (52%), Positives = 173/253 (68%), Gaps = 10/253 (3%)
Query: 13 KTSYGFREVPEEEKQNMVNHVFSRVSHRYDVMNDLMSLGLHRFWKEAMVTNLNPRKSKDY 72
T +GF+ V E EK+ +V+HVF V+ +YD+MND MSLG+HR WK+ V+ L P K
Sbjct: 45 CTHFGFKTVRESEKERLVHHVFESVAKKYDIMNDAMSLGIHRLWKDMFVSKLGPGKGM-- 102
Query: 73 RVLDVAGGTGDVAFRIAEAS-----DNRSQIVVADINNEMLSVGRDRAFKENLQDCIT-- 125
+VLDVAGGTGD+AFRI D S++ V DIN ML+VG+ RA K L+
Sbjct: 103 KVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVE 162
Query: 126 FIEANAETLPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPV 185
++E +AE LPF+ +SFDA T+AFGIRN+ HI L+E YR+LK GGR LEFS+V+
Sbjct: 163 WVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVENEP 222
Query: 186 FKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSF-TN 244
K YD +SF V+P LG IAGD + YQYL+ESIRRFP Q++FA++I AGFS+V+ N
Sbjct: 223 LKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPPQEEFASMIEDAGFSSVNGYEN 282
Query: 245 YTNGVVALHSGWK 257
T GVVA+HSG K
Sbjct: 283 LTFGVVAIHSGIK 295
|
Length = 296 |
| >gnl|CDD|149353 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 3e-15
Identities = 35/101 (34%), Positives = 56/101 (55%), Gaps = 6/101 (5%)
Query: 75 LDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETL 134
LDV GTG + +A +Q+ D++ EML++ R RA ++ L F+ +AE L
Sbjct: 1 LDVGCGTGLLTEALARLPG--AQVTGVDLSPEMLALARKRAQEDGLT----FVVGDAEDL 54
Query: 135 PFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLV 175
PF SFD + + ++P L+EI R+LK GG+L++
Sbjct: 55 PFPDESFDVVVSSLVLHHLPDPERALREIARVLKPGGKLVI 95
|
Members of this family are SAM dependent methyltransferases. Length = 95 |
| >gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 9e-14
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 10/110 (9%)
Query: 73 RVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAE 132
RVLDV G G+ A +A ++V D + ML++ ++RA + F+ +A+
Sbjct: 22 RVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPN--VEFVRGDAD 79
Query: 133 TLPFEANSFDAC----TLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEF 178
LPF SFDA L + + L EI R+L+ GGR++VL+
Sbjct: 80 GLPFPDGSFDAVRSDRVLQH-LEDPAR---ALAEIARVLRPGGRVVVLDT 125
|
Length = 241 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 9e-10
Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 73 RVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAE 132
RVLD+ GTG +A +A +++ DI+ L + R A L D + ++ +AE
Sbjct: 1 RVLDLGCGTGALALALASGPG--ARVTGVDISPVALELARKAAA-ALLADNVEVLKGDAE 57
Query: 133 TLPFEA-NSFDACTLAFGIR-NMPHITLVLQEIYRILKCGGRLLV 175
LP EA SFD + + + L+E R+LK GG L++
Sbjct: 58 ELPPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVL 102
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).. Length = 107 |
| >gnl|CDD|149354 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 7e-09
Identities = 22/100 (22%), Positives = 37/100 (37%), Gaps = 3/100 (3%)
Query: 75 LDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETL 134
LD+ GTG + + EA + DI+ L +R + +
Sbjct: 1 LDIGCGTGTLLRALLEALPG-LEYTGVDISPAALEAAAER-LAALGLLDAVRVRLDVLDA 58
Query: 135 PFEA-NSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRL 173
SFD + + ++ VL+ + R+LK GG L
Sbjct: 59 IDLDPGSFDVVVASNVLHHLADPRAVLRNLRRLLKPGGVL 98
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|39501 KOG4300, KOG4300, KOG4300, Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 9e-05
Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 3/119 (2%)
Query: 74 VLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET 133
VL+V GTG F+ S + D N +M + A ++ F+ A+ E
Sbjct: 80 VLEVGCGTG-ANFKFYPWKPINSVTCL-DPNEKMEEIADKSAAEKKPLQVERFVVADGEN 137
Query: 134 LPFEAN-SFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYD 191
LP A+ S+D + ++ L E+ R+L+ GGR++ +E + + +I
Sbjct: 138 LPQLADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQ 196
|
Length = 252 |
| >gnl|CDD|32409 COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 1e-04
Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 5/103 (4%)
Query: 73 RVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAE 132
RVLDV G G ++ +A + + D + + + V + A + + I + +A E
Sbjct: 62 RVLDVGCGGGILSEPLARLG---ASVTGIDASEKPIEVAKLHALESGVN--IDYRQATVE 116
Query: 133 TLPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLV 175
L FD T + ++P L+ +++K GG L +
Sbjct: 117 DLASAGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFL 159
|
Length = 243 |
| >gnl|CDD|36483 KOG1269, KOG1269, KOG1269, SAM-dependent methyltransferases [Lipid transport and metabolism, General function prediction only] | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 1e-04
Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 2/107 (1%)
Query: 73 RVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAE 132
+VLDV G G + IA ++ +V D N + A K L + F+ A+
Sbjct: 113 KVLDVGTGVGGPSRYIAVFK--KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFG 170
Query: 133 TLPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFS 179
+PFE N+FD + + P + V EIYR+LK GG +V E+
Sbjct: 171 KMPFEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWI 217
|
Length = 364 |
| >gnl|CDD|32589 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 37.9 bits (88), Expect = 0.003
Identities = 24/117 (20%), Positives = 44/117 (37%), Gaps = 10/117 (8%)
Query: 59 AMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKE 118
++P RVL+ G+G + +A A + +I + R+ +
Sbjct: 87 VARLGISPGS----RVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEF 142
Query: 119 NLQDCITFIEANAETLPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLV 175
L D +T + + DA L ++P VL+ + LK GG ++V
Sbjct: 143 GLGDRVTLKLGDV-REGIDEEDVDAVFL-----DLPDPWNVLEHVSDALKPGGVVVV 193
|
Length = 256 |
| >gnl|CDD|36754 KOG1541, KOG1541, KOG1541, Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Score = 38.1 bits (88), Expect = 0.003
Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 20/116 (17%)
Query: 74 VLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET 133
+LD+ G+G + SD+ Q + DI+ ML +R + +L C E
Sbjct: 54 ILDIGCGSGLSG---SVLSDSGHQWIGVDISPSMLEQAVERELEGDLILCDM-----GEG 105
Query: 134 LPFEANSFDACTLAFGIR---------NMPHITLV--LQEIYRILKCGGRLLVLEF 178
LPF +FD ++ ++P L+ +Y LK G R VL+F
Sbjct: 106 LPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGAR-AVLQF 160
|
Length = 270 |
| >gnl|CDD|165876 PLN02232, PLN02232, ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Score = 63.2 bits (153), Expect = 7e-11
Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 7/151 (4%)
Query: 102 DINNEMLSVG--RDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFGIRNMPHITLV 159
D ++E L+V R + CI +IE +A LPF+ FDA T+ +G+RN+
Sbjct: 4 DFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRA 63
Query: 160 LQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFK--VIPQLGRFIAGDEEPYQYLIE 217
++E+YR+LK G R+ +L+F++ V W V+P + E Y+YL
Sbjct: 64 MKEMYRVLKPGSRVSILDFNKSNQSV-TTFMQGWMIDNVVVPVATVYDLAKE--YEYLKY 120
Query: 218 SIRRFPNQQDFAAVISAAGFSNVSFTNYTNG 248
SI + ++ + AGFS+ + G
Sbjct: 121 SINGYLTGEELETLALEAGFSSACHYEISGG 151
|
Length = 160 |
| >gnl|CDD|183351 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 5e-05
Identities = 44/182 (24%), Positives = 74/182 (40%), Gaps = 47/182 (25%)
Query: 73 RVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFK---ENLQDCITFIEA 129
VLD+ G G F A +++ D+ EML+ R A K N + F
Sbjct: 80 TVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTN----VEFRLG 135
Query: 130 NAETLPFEANSFDA----CTLAFGIRNM-PHITLVLQEIYRILKCGGRLLVLEFSEV--Q 182
E LP NS D C + N+ P V +E +R+LK GGR + S+V +
Sbjct: 136 EIEALPVADNSVDVIISNCVI-----NLSPDKERVFKEAFRVLKPGGRFAI---SDVVLR 187
Query: 183 GPV---FKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSN 239
G + + ++++ +AG + +YL A+++ AGF +
Sbjct: 188 GELPEEIRNDAELYA--------GCVAGALQEEEYL--------------AMLAEAGFVD 225
Query: 240 VS 241
++
Sbjct: 226 IT 227
|
Length = 272 |
| >gnl|CDD|178108 PLN02490, PLN02490, MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 2e-10
Identities = 51/191 (26%), Positives = 82/191 (42%), Gaps = 34/191 (17%)
Query: 56 WKEAMVTN-LNPRK--SKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGR 112
W E M + L P ++ +V+DV GGTG I + D ++ + + D + L+ +
Sbjct: 96 WTEDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKN-VTILDQSPHQLAKAK 154
Query: 113 DRAFKENLQDCITFIEANAETLPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGR 172
KE L++C IE +AE LPF + D A I P ++E YR+LK GG+
Sbjct: 155 Q---KEPLKEC-KIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGK 210
Query: 173 LLVLEFSEVQGPVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVI 232
++ GPV + L RF A + FP ++++
Sbjct: 211 ACLI------GPVHPTFW----------LSRFFA----------DVWMLFPKEEEYIEWF 244
Query: 233 SAAGFSNVSFT 243
+ AGF +V
Sbjct: 245 TKAGFKDVKLK 255
|
Length = 340 |
| >gnl|CDD|30846 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 47.1 bits (108), Expect = 5e-06
Identities = 38/195 (19%), Positives = 74/195 (37%), Gaps = 2/195 (1%)
Query: 29 MVNHVFSRVSHRYDVMNDLMSLGLHRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRI 88
+ + R + D L +V L VLD+ GTG +A +
Sbjct: 7 ELLSRILELYDRLAELLDAFLLLAEELLDLLLVLRLLRLLPGGLGVLDIGCGTGRLAL-L 65
Query: 89 AEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFI-EANAETLPFEANSFDACTLA 147
A + +V D++ EML++ R RA L + +A LPFE ++ ++
Sbjct: 66 ARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVIS 125
Query: 148 FGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLGRFIAG 207
+ ++ L+E+ R+LK GGRL++ + + + + + G +
Sbjct: 126 LLVLHLLPPAKALRELLRVLKPGGRLVLSDLLRDGLLEGRLAALLGFGDPVLERGDILLE 185
Query: 208 DEEPYQYLIESIRRF 222
E + + +
Sbjct: 186 LEALLRLELLDLEEL 200
|
Length = 257 |
| >gnl|CDD|36876 KOG1663, KOG1663, KOG1663, O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Score = 39.1 bits (91), Expect = 0.001
Identities = 37/153 (24%), Positives = 64/153 (41%), Gaps = 12/153 (7%)
Query: 73 RVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANA- 131
R L++ TG A +A A ++V +I+ + +G + + ITFIE A
Sbjct: 76 RTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPAL 135
Query: 132 ETLP-----FEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLL---VLEFSEVQG 183
E+L E+ +FD AF + + + + + R+L+ GG ++ VL V
Sbjct: 136 ESLDELLADGESGTFD---FAFVDADKDNYSNYYERLLRLLRVGGVIVVDNVLWPGVVAD 192
Query: 184 PVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLI 216
P S + L + +A D Y L+
Sbjct: 193 PDVNTPVRGRSIREALNLNKKLARDPRVYISLL 225
|
Length = 237 |
| >gnl|CDD|30493 COG0144, Sun, tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 37.3 bits (86), Expect = 0.004
Identities = 43/208 (20%), Positives = 74/208 (35%), Gaps = 41/208 (19%)
Query: 61 VTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVA-DINNEMLSVGRDRAFKEN 119
L+P+ + RVLD+ G +AE +N IVVA D++ + L R+ +
Sbjct: 149 ALVLDPKPGE--RVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLG 206
Query: 120 LQDCITFIE--ANAETLPFEANSFDA------CTLAFGIRNMPHITL------------- 158
+++ I + L FD C+ IR P +
Sbjct: 207 VRNVIVVNKDARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKL 266
Query: 159 ---VLQEIYRILKCGGRLL-------VLEFSEVQGPVFKKIYDMWSFKVIPQLGRFIAGD 208
+L ++LK GG L+ E EV ++ D F++ P +
Sbjct: 267 QKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERFLERHPD---FELEPVRLPWGPLF 323
Query: 209 EEPYQYLIESIRRFPNQQD----FAAVI 232
E L ++ R +P+ F A +
Sbjct: 324 EGLGSELGKTRRLYPHVHGTDGFFIAKL 351
|
Length = 355 |
| >gnl|CDD|32411 COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 2e-04
Identities = 33/178 (18%), Positives = 55/178 (30%), Gaps = 32/178 (17%)
Query: 22 PEEEKQNMVNHVFSRVSHRYDVMNDLMSLGLHRFWK--EAMVTNLNP------RKSKDY- 72
++ + YD+ ND L L A + + R D
Sbjct: 5 RRLLNRHSKRRAAENIQAHYDLSNDFYRLFLDPSMTYSCAYFEDPDMTLEEAQRAKLDLI 64
Query: 73 ----------RVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQD 122
+LD+ G G +A AE +V ++ E L+ R L+D
Sbjct: 65 LEKLGLKPGMTLLDIGCGWGGLAIYAAEEYG--VTVVGVTLSEEQLAYAEKRIAARGLED 122
Query: 123 CITFIEANAETLPFEANSFDACTL-----AFGIRNMPHITLVLQEIYRILKCGGRLLV 175
+ + FD G N +++Y +LK GGR+L+
Sbjct: 123 NVEVRLQDYRDFE---EPFDRIVSVGMFEHVGKENYDDF---FKKVYALLKPGGRMLL 174
|
Length = 283 |
Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
| Identity | Alignment graph | Length | Definition | Probability |
| Target | 265 | ubiquinone/menaquinone biosynthesis methyltransferase [ | ||
| TIGR01934 | 242 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis meth | 100.0 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltransfer | 100.0 | |
| pfam01209 | 233 | Ubie_methyltran ubiE/COQ5 methyltransferase family. | 100.0 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone biosy | 100.0 | |
| KOG1540 | 296 | consensus | 100.0 | |
| PRK05785 | 225 | hypothetical protein; Provisional | 100.0 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methylt | 100.0 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 100.0 | |
| PRK05134 | 233 | 3-demethylubiquinone-9 3-methyltransferase; Provisional | 99.96 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provisional | 99.96 | |
| TIGR02072 | 272 | BioC biotin biosynthesis protein BioC; InterPro: IPR011 | 99.94 | |
| PRK01683 | 252 | trans-aconitate 2-methyltransferase; Provisional | 99.91 | |
| PRK11036 | 256 | putative metallothionein SmtA; Provisional | 99.88 | |
| pfam02353 | 273 | CMAS Cyclopropane-fatty-acyl-phospholipid synthase. Thi | 99.88 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.87 | |
| KOG4300 | 252 | consensus | 99.86 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related methyl | 99.85 | |
| KOG1270 | 282 | consensus | 99.82 | |
| TIGR02021 | 224 | BchM-ChlM magnesium protoporphyrin O-methyltransferase; | 99.78 | |
| PRK06202 | 233 | hypothetical protein; Provisional | 99.69 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) [Gene | 99.55 | |
| pfam08003 | 315 | Methyltransf_9 Protein of unknown function (DUF1698). T | 99.51 | |
| TIGR00740 | 247 | TIGR00740 methyltransferase, putative; InterPro: IPR005 | 99.48 | |
| KOG2361 | 264 | consensus | 99.45 | |
| PRK00517 | 298 | prmA ribosomal protein L11 methyltransferase; Reviewed | 99.31 | |
| KOG1975 | 389 | consensus | 99.28 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General function | 99.28 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, ribo | 99.14 | |
| TIGR00452 | 316 | TIGR00452 methyltransferase, putative; InterPro: IPR010 | 99.12 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU; InterPro: | 99.05 | |
| pfam05891 | 217 | Hydroxy-O-Methy Putative hydroxyindole-O-methyltransfer | 99.01 | |
| KOG3178 | 342 | consensus | 98.99 | |
| KOG3191 | 209 | consensus | 97.95 | |
| pfam05971 | 254 | Methyltransf_10 Protein of unknown function (DUF890). T | 97.88 | |
| pfam04672 | 268 | DUF574 Protein of unknown function (DUF574). Family of | 97.76 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal struct | 97.57 | |
| pfam03514 | 371 | GRAS GRAS family transcription factor. Sequence analysi | 92.76 | |
| PRK11873 | 258 | arsM arsenite S-adenosylmethyltransferase; Reviewed | 99.97 | |
| TIGR01983 | 275 | UbiG ubiquinone biosynthesis O-methyltransferase; Inter | 99.93 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzo | 99.84 | |
| pfam07021 | 193 | MetW Methionine biosynthesis protein MetW. This family | 99.71 | |
| pfam05148 | 214 | Methyltransf_8 Hypothetical methyltransferase. This fam | 99.53 | |
| PRK09328 | 277 | N5-glutamine S-adenosyl-L-methionine-dependent methyltr | 99.51 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransferase, | 99.48 | |
| TIGR02081 | 205 | metW methionine biosynthesis protein MetW; InterPro: IP | 99.47 | |
| TIGR03534 | 251 | RF_mod_HemK protein-(glutamine-N5) methyltransferase, r | 99.43 | |
| KOG3045 | 325 | consensus | 99.4 | |
| pfam03291 | 327 | Pox_MCEL mRNA capping enzyme. This family of enzymes ar | 99.38 | |
| KOG1271 | 227 | consensus | 99.23 | |
| PRK09329 | 285 | N5-glutamine S-adenosyl-L-methionine-dependent methyltr | 99.23 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factors [Tr | 99.21 | |
| pfam12147 | 311 | Hydrolase_5 Putative lysophospholipase. This domain is | 99.03 | |
| pfam05219 | 265 | DREV DREV methyltransferase. This family contains DREV | 99.03 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents a dis | 98.69 | |
| KOG2899 | 288 | consensus | 98.68 | |
| pfam06080 | 201 | DUF938 Protein of unknown function (DUF938). This famil | 98.62 | |
| pfam07942 | 268 | N2227 N2227-like protein. This family features sequence | 98.49 | |
| pfam01234 | 261 | NNMT_PNMT_TEMT NNMT/PNMT/TEMT family. | 98.44 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, EasF fam | 98.2 | |
| ), spermine synthase ( | 284 | speE spermidine synthase; InterPro: IPR001045 Synonym(s | 98.17 | |
| PTZ00146 | 296 | fibrillarin; Provisional | 98.0 | |
| PRK04266 | 226 | fibrillarin; Provisional | 97.9 | |
| pfam11968 | 220 | DUF3321 Protein of unknown function (DUF3321). This fam | 97.77 | |
| pfam03059 | 277 | NAS Nicotianamine synthase protein. Nicotianamine synth | 97.63 | |
| COG4798 | 238 | Predicted methyltransferase [General function predictio | 97.45 | |
| pfam03492 | 331 | Methyltransf_7 SAM dependent carboxyl methyltransferase | 97.35 | |
| PRK11727 | 326 | putative SAM-dependent methyltransferase; Provisional | 97.28 | |
| KOG2798 | 369 | consensus | 96.81 | |
| PRK13341 | 726 | recombination factor protein RarA/unknown domain fusion | 96.63 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 94.6 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknown] | 93.7 | |
| KOG2918 | 335 | consensus | 92.66 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.97 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Provisio | 99.63 | |
| KOG1541 | 270 | consensus | 99.42 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function predict | 99.33 | |
| pfam05401 | 201 | NodS Nodulation protein S (NodS). This family consists | 99.32 | |
| KOG1331 | 293 | consensus | 99.24 | |
| pfam06325 | 294 | PrmA Ribosomal protein L11 methyltransferase (PrmA). Th | 99.18 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replication, | 99.03 | |
| TIGR00406 | 330 | prmA ribosomal protein L11 methyltransferase; InterPro: | 98.89 | |
| PRK00107 | 216 | gidB glucose-inhibited division protein B; Reviewed | 98.72 | |
| pfam02527 | 184 | GidB rRNA small subunit methyltransferase G. This is a | 98.53 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent methyltra | 98.53 | |
| TIGR00138 | 197 | gidB methyltransferase GidB; InterPro: IPR003682 GidB ( | 98.29 | |
| PRK01581 | 363 | speE spermidine synthase; Validated | 98.15 | |
| KOG1709 | 271 | consensus | 97.62 | |
| KOG1099 | 294 | consensus | 96.91 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, ribo | 96.21 | |
| PRK11783 | 716 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | 96.18 | |
| TIGR00478 | 240 | tly hemolysin A; InterPro: IPR004538 Hemolysins are exo | 96.15 | |
| KOG0024 | 354 | consensus | 95.84 | |
| KOG2198 | 375 | consensus | 95.74 | |
| pfam05711 | 249 | TylF Macrocin-O-methyltransferase (TylF). This family c | 90.5 | |
| KOG1227 | 351 | consensus | 90.17 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (PKS) e | 99.94 | |
| pfam08241 | 95 | Methyltransf_11 Methyltransferase domain. Members of th | 99.82 | |
| pfam08242 | 98 | Methyltransf_12 Methyltransferase domain. Members of th | 99.78 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methyltran | 99.76 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.62 | |
| pfam05175 | 170 | MTS Methyltransferase small domain. This domain is foun | 99.6 | |
| PRK11207 | 198 | tellurite resistance protein TehB; Provisional | 99.54 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provi | 99.54 | |
| KOG3010 | 261 | consensus | 99.47 | |
| PRK06922 | 679 | hypothetical protein; Provisional | 99.45 | |
| PRK08287 | 186 | cobalt-precorrin-6Y C(15)-methyltransferase; Validated | 99.44 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General function | 99.43 | |
| pfam01135 | 205 | PCMT Protein-L-isoaspartate(D-aspartate) O-methyltransf | 99.42 | |
| PRK01544 | 503 | bifunctional N5-glutamine S-adenosyl-L-methionine-depen | 99.41 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | 99.41 | |
| PRK13942 | 214 | protein-L-isoaspartate O-methyltransferase; Provisional | 99.4 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent methyltr | 99.39 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase and rel | 99.37 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provisional | 99.36 | |
| pfam03848 | 192 | TehB Tellurite resistance protein TehB. | 99.29 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.29 | |
| pfam08704 | 309 | GCD14 tRNA methyltransferase complex GCD14 subunit. GCD | 99.28 | |
| TIGR02469 | 135 | CbiT precorrin-6Y C5,15-methyltransferase (decarboxylat | 99.26 | |
| KOG1269 | 364 | consensus | 99.25 | |
| KOG2940 | 325 | consensus | 99.24 | |
| PRK00312 | 213 | pcm protein-L-isoaspartate O-methyltransferase; Reviewe | 99.24 | |
| PRK13943 | 317 | protein-L-isoaspartate O-methyltransferase; Provisional | 99.24 | |
| pfam01170 | 171 | UPF0020 Putative RNA methylase family UPF0020. This dom | 99.2 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provi | 99.12 | |
| pfam01596 | 204 | Methyltransf_3 O-methyltransferase. Members of this fam | 99.11 | |
| pfam00891 | 239 | Methyltransf_2 O-methyltransferase. This family include | 99.05 | |
| pfam02390 | 199 | Methyltransf_4 Putative methyltransferase. This is a fa | 99.03 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransferase [P | 99.03 | |
| PRK00121 | 229 | trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | 99.01 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function predict | 98.99 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ribosom | 98.99 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltransfer | 98.96 | |
| pfam02475 | 199 | Met_10 Met-10+ like-protein. The methionine-10 mutant a | 98.94 | |
| PRK12335 | 289 | tellurite resistance protein TehB; Provisional | 98.93 | |
| KOG1499 | 346 | consensus | 98.85 | |
| PRK10901 | 428 | 16S rRNA methyltransferase B; Provisional | 98.85 | |
| TIGR00091 | 216 | TIGR00091 tRNA (guanine-N(7)-)-methyltransferase; Inter | 98.85 | |
| pfam09243 | 275 | Rsm22 Mitochondrial small ribosomal subunit Rsm22. Rsm2 | 98.78 | |
| TIGR00477 | 239 | tehB tellurite resistance protein TehB; InterPro: IPR00 | 98.76 | |
| KOG2904 | 328 | consensus | 98.72 | |
| ) (PCMT) (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyzes the transfer of a methyl group from S- adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerization of normal L-aspartyl and L- asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=TIGR00080">TIGR00080 | 228 | pimt protein-L-isoaspartate O-methyltransferase; InterP | 98.7 | |
| PRK11933 | 471 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Revi | 98.67 | |
| TIGR00537 | 183 | hemK_rel_arch methylase, putative; InterPro: IPR004557 | 98.63 | |
| pfam03141 | 506 | DUF248 Putative methyltransferase. Members of this fami | 98.63 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Methylate | 98.62 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 98.62 | |
| pfam01189 | 277 | Nol1_Nop2_Fmu NOL1/NOP2/sun family. | 98.62 | |
| KOG1661 | 237 | consensus | 98.59 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary metabo | 98.59 | |
| pfam02384 | 312 | N6_Mtase N-6 DNA Methylase. Restriction-modification (R | 98.58 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.56 | |
| TIGR00563 | 487 | rsmB ribosomal RNA small subunit methyltransferase B; I | 98.53 | |
| pfam01739 | 194 | CheR CheR methyltransferase, SAM binding domain. CheR p | 98.52 | |
| TIGR00479 | 434 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA; Inter | 98.49 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting proteins | 98.48 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translation, | 98.47 | |
| TIGR00438 | 192 | rrmJ ribosomal RNA large subunit methyltransferase J; I | 98.47 | |
| KOG1663 | 237 | consensus | 98.47 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [General fun | 98.46 | |
| pfam10294 | 171 | Methyltransf_16 Putative methyltransferase. | 98.41 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.38 | |
| KOG1500 | 517 | consensus | 98.36 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism] | 98.36 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and meta | 98.35 | |
| COG2520 | 341 | Predicted methyltransferase [General function predictio | 98.33 | |
| pfam05724 | 203 | TPMT Thiopurine S-methyltransferase (TPMT). This family | 98.31 | |
| PRK03612 | 516 | spermidine synthase; Provisional | 98.3 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.29 | |
| pfam01564 | 240 | Spermine_synth Spermine/spermidine synthase. Spermine a | 98.27 | |
| PRK10909 | 198 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | 98.26 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associated met | 98.17 | |
| KOG2915 | 314 | consensus | 98.17 | |
| pfam10672 | 286 | Methyltrans_SAM S-adenosylmethionine-dependent methyltr | 98.16 | |
| pfam01728 | 176 | FtsJ FtsJ-like methyltransferase. This family consists | 98.16 | |
| pfam08123 | 205 | DOT1 Histone methylation protein DOT1. The DOT1 domain | 98.14 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, recombi | 98.09 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal structu | 98.09 | |
| PRK01544 | 503 | bifunctional N5-glutamine S-adenosyl-L-methionine-depen | 98.05 | |
| pfam03602 | 181 | Cons_hypoth95 Conserved hypothetical protein 95. | 97.98 | |
| pfam01269 | 229 | Fibrillarin Fibrillarin. | 97.96 | |
| KOG3987 | 288 | consensus | 97.86 | |
| KOG1122 | 460 | consensus | 97.8 | |
| KOG2352 | 482 | consensus | 97.72 | |
| TIGR00446 | 284 | nop2p NOL1/NOP2/sun family putative RNA methylase; Inte | 97.72 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 97.68 | |
| pfam02005 | 375 | TRM N2,N2-dimethylguanosine tRNA methyltransferase. Thi | 97.43 | |
| PRK11783 | 716 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | 97.4 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 97.39 | |
| pfam06962 | 140 | rRNA_methylase Putative rRNA methylase. This family con | 97.37 | |
| pfam05185 | 447 | PRMT5 PRMT5 arginine-N-methyltransferase. The human hom | 97.32 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal membra | 97.27 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General funct | 97.18 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 97.13 | |
| PRK00050 | 309 | mraW S-adenosyl-methyltransferase MraW; Provisional | 97.01 | |
| pfam01795 | 310 | Methyltransf_5 MraW methylase family. Members of this f | 97.0 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyltrans | 96.89 | |
| PRK04338 | 376 | N(2),N(2)-dimethylguanosine tRNA methyltransferase; Pro | 96.84 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrog | 96.83 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal struct | 96.77 | |
| KOG3115 | 249 | consensus | 96.65 | |
| PRK10083 | 339 | putative dehydrogenase; Provisional | 96.58 | |
| KOG1253 | 525 | consensus | 96.35 | |
| COG4076 | 252 | Predicted RNA methylase [General function prediction on | 96.33 | |
| KOG3201 | 201 | consensus | 96.24 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA deh | 96.16 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 96.16 | |
| TIGR01177 | 358 | TIGR01177 conserved hypothetical protein TIGR01177; Int | 96.12 | |
| PRK13771 | 332 | putative alcohol dehydrogenase; Provisional | 96.06 | |
| KOG2539 | 491 | consensus | 96.06 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism associate | 95.88 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-dependent de | 95.79 | |
| KOG0822 | 649 | consensus | 95.76 | |
| KOG4058 | 199 | consensus | 95.67 | |
| PRK09422 | 338 | alcohol dehydrogenase; Provisional | 95.59 | |
| COG3897 | 218 | Predicted methyltransferase [General function predictio | 95.4 | |
| TIGR00095 | 210 | TIGR00095 putative methyltransferase; InterPro: IPR0043 | 95.34 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 95.2 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Tr | 95.13 | |
| pfam07091 | 248 | FmrO Ribosomal RNA methyltransferase (FmrO). This famil | 95.05 | |
| pfam00107 | 131 | ADH_zinc_N Zinc-binding dehydrogenase. | 95.02 | |
| pfam04989 | 202 | CmcI Cephalosporin hydroxylase. Members of this family | 94.98 | |
| KOG4589 | 232 | consensus | 94.75 | |
| TIGR00692 | 341 | tdh L-threonine 3-dehydrogenase; InterPro: IPR004627 L- | 94.57 | |
| PRK05396 | 341 | tdh L-threonine 3-dehydrogenase; Validated | 94.47 | |
| KOG1269 | 364 | consensus | 94.38 | |
| TIGR02817 | 338 | adh_fam_1 zinc-binding alcohol dehydrogenase family pro | 94.07 | |
| PRK07417 | 280 | arogenate dehydrogenase; Reviewed | 94.04 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 94.02 | |
| KOG1596 | 317 | consensus | 93.59 | |
| KOG1562 | 337 | consensus | 92.91 | |
| KOG2793 | 248 | consensus | 92.33 | |
| pfam11312 | 288 | DUF3115 Protein of unknown function (DUF3115). This euk | 92.03 | |
| pfam03141 | 506 | DUF248 Putative methyltransferase. Members of this fami | 91.79 | |
| pfam01262 | 150 | AlaDh_PNT_C Alanine dehydrogenase/PNT, C-terminal domai | 91.27 | |
| PRK11760 | 356 | putative RNA 2'-O-ribose methyltransferase; Provisional | 90.31 | |
| PRK10754 | 327 | quinone oxidoreductase, NADPH-dependent; Provisional | 90.05 | |
| pfam09445 | 165 | Methyltransf_15 RNA cap guanine-N2 methyltransferase. R | 98.72 | |
| TIGR00755 | 277 | ksgA dimethyladenosine transferase; InterPro: IPR011530 | 98.72 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal structu | 98.49 | |
| PRK05031 | 363 | tRNA (uracil-5-)-methyltransferase; Validated | 98.39 | |
| PRK03522 | 375 | rumB 23S rRNA methyluridine methyltransferase; Reviewed | 98.38 | |
| PTZ00338 | 296 | dimethyladenosine transferase; Provisional | 98.36 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylation) [ | 98.31 | |
| pfam05958 | 353 | tRNA_U5-meth_tr tRNA (Uracil-5-)-methyltransferase. Thi | 98.27 | |
| KOG3420 | 185 | consensus | 98.18 | |
| KOG0820 | 315 | consensus | 98.16 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA replic | 98.15 | |
| PRK13168 | 440 | rumA 23S rRNA 5-methyluridine methyltransferase; Review | 98.15 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to tRNA ( | 98.14 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.04 | |
| pfam00398 | 258 | RrnaAD Ribosomal RNA adenine dimethylase. | 98.01 | |
| PRK00274 | 267 | ksgA dimethyladenosine transferase; Reviewed | 97.98 | |
| KOG2187 | 534 | consensus | 97.94 | |
| pfam04816 | 204 | DUF633 Family of unknown function (DUF633). This family | 97.73 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltransfer | 97.69 | |
| KOG2730 | 263 | consensus | 97.57 | |
| PHA02056 | 279 | putative methyltransferase | 97.1 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General func | 96.47 | |
| TIGR02143 | 361 | trmA_only tRNA (uracil-5-)-methyltransferase; InterPro: | 96.37 | |
| KOG1501 | 636 | consensus | 96.34 | |
| TIGR00536 | 311 | hemK_fam methyltransferase, HemK family; InterPro: IPR0 | 96.14 | |
| TIGR02085 | 386 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase R | 94.28 | |
| pfam04445 | 235 | DUF548 Protein of unknown function (DUF548). Protein of | 90.63 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Function | 97.53 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 95.21 | |
| PRK13699 | 227 | putative methylase; Provisional | 93.99 | |
| PRK01747 | 660 | mnmC 5-methylaminomethyl-2-thiouridine methyltransferas | 94.77 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknown] | 93.64 | |
| pfam02636 | 240 | DUF185 Uncharacterized ACR, COG1565. This family contai | 93.48 | |
| TIGR01444 | 142 | fkbM_fam methyltransferase, FkbM family; InterPro: IPR0 | 92.78 | |
| KOG2920 | 282 | consensus | 92.06 | |
| pfam06859 | 110 | Bin3 Bicoid-interacting protein 3 (Bin3). This family r | 93.22 | |
| pfam05430 | 124 | DUF752 Protein of unknown function (DUF752). This famil | 92.57 | |
| PRK13699 | 227 | putative methylase; Provisional | 92.61 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 92.55 |
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=536.99 Aligned_cols=228 Identities=45% Similarity=0.812 Sum_probs=219.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC--CCCCEEEECCHHHHHHHHHHHHHCC--------CCCEEE Q ss_conf 999998763421157667614801799999985206446--7997798602335577777664138--------863278 Q gi|254780624|r 30 VNHVFSRVSHRYDVMNDLMSLGLHRFWKEAMVTNLNPRK--SKDYRVLDVAGGTGDVAFRIAEASD--------NRSQIV 99 (265) Q Consensus 30 v~~~F~~iA~~YD~~N~~~S~G~~r~Wr~~~i~~l~~~~--~~~~~iLDiGcGTG~~~~~l~~~~~--------~~~~v~ 99 (265) T Consensus 1 v~~~F~~iA~~YD~~N~~lSfG~h~~Wr~~~~~~~~~~~E~k~~~~~LDvA~GTGD~a~~~~k~~~~~~~a~~~~~~~vt 80 (242) T TIGR01934 1 VQEMFDRIAPKYDLLNDLLSFGLHRLWRRRAVKLIGVQLEGKKGQKVLDVACGTGDLAIELAKKAGKVGKAAETERAKVT 80 (242) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCCEEEE T ss_conf 93478776443526755776743289999999987862368888977887238399999998635755533577633789 Q ss_pred EECCCCCCCCCCCCCHHCCC---CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEE Q ss_conf 72133222211110000011---222222222223334575544674036642013213443201210004852117763 Q gi|254780624|r 100 VADINNEMLSVGRDRAFKEN---LQDCITFIEANAETLPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVL 176 (265) Q Consensus 100 giD~s~~Ml~~a~~r~~~~~---~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~ 176 (265) T Consensus 81 g~D~S~~ML~~a~kk~~~~~r~~~~~~~~f~~~dA~~LPF~D~sFD~~TiaFGlRN~~d~~~aL~E~~RVLKpgG~l~iL 160 (242) T TIGR01934 81 GVDFSEEMLEVAKKKAPNEERKALSANVSFIEADAEALPFEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVIL 160 (242) T ss_pred EEECCHHHHHHHHHHHHHHHHHHHHCCCHHEECHHHCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCEEEEE T ss_conf 87079889999987413420033321642110005508799862444664025547468678987731101889879984 Q ss_pred ECCCCCC-CHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCEEEEEEE Q ss_conf 0554455-101123456531113321025428876865789999968998999999997599537999855664999999 Q gi|254780624|r 177 EFSEVQG-PVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNYTNGVVALHSG 255 (265) Q Consensus 177 df~~p~~-~~~~~~~~~y~~~iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~~~~Gi~~i~~g 255 (265) T Consensus 161 Ef~~P~~~~~~~~~Y~~Y~~~v~P~~G~~~s~~~~aY~YL~eSi~~FP~~~~l~~~~~~aGF~~~~~~~l~fGv~~~~~g 240 (242) T TIGR01934 161 EFSKPANGAFLKKFYKFYLKNVLPSIGGLISKNKEAYEYLPESIRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVG 240 (242) T ss_pred CCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEECCCHHHHHHHHHC T ss_conf 07867641688999998850003777777407886657788998753898899999997386321100303552665542 Q ss_pred EE Q ss_conf 81 Q gi|254780624|r 256 WK 257 (265) Q Consensus 256 ~K 257 (265) T Consensus 241 ~K 242 (242) T TIGR01934 241 KK 242 (242) T ss_pred CC T ss_conf 79 |
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity. |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=506.99 Aligned_cols=239 Identities=46% Similarity=0.846 Sum_probs=232.7 Q ss_pred CEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCE Q ss_conf 21279899999999999876342115766761480179999998520644679977986023355777776641388632 Q gi|254780624|r 18 FREVPEEEKQNMVNHVFSRVSHRYDVMNDLMSLGLHRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQ 97 (265) Q Consensus 18 f~~v~~~~k~~~v~~~F~~iA~~YD~~N~~~S~G~~r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~ 97 (265) T Consensus 1 ~~~~~~~~k~~~V~~~Fd~iA~~YD~~N~~~S~G~~~~Wr~~~v~~l~~~~g--~~vLDvgcGTG~~~~~l~~~~~~~~~ 78 (239) T PRK00216 1 FMTVALEEKQEKVAEVFDSIAPKYDLMNDLLSFGLHRVWRRKTIKWLGVRPG--DKVLDLACGTGDLAIALAKAVGETGE 78 (239) T ss_pred CCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCC--CEEEEECCCCCHHHHHHHHHCCCCCE T ss_conf 9437856799999999988787885876675075199999999986278999--98988457763879999997299767 Q ss_pred EEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEE Q ss_conf 78721332222111100000112222222222233345755446740366420132134432012100048521177630 Q gi|254780624|r 98 IVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLE 177 (265) Q Consensus 98 v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~d 177 (265) T Consensus 79 v~g~D~S~~ML~~A~~k~~~~~~~~~i~~~~~da~~lpf~d~sfD~v~~~f~l~~~~d~~~~l~E~~RVLkPGG~l~ile 158 (239) T PRK00216 79 VVGLDFSEGMLAVGREKLLDKGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILE 158 (239) T ss_pred EEEEECCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHCCCCEEEEEEE T ss_conf 99991988999999999997389888507982355688876667650026156714867999999998766480899997 Q ss_pred CCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCEEEEEEEEE Q ss_conf 55445510112345653111332102542887686578999996899899999999759953799985566499999981 Q gi|254780624|r 178 FSEVQGPVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNYTNGVVALHSGWK 257 (265) Q Consensus 178 f~~p~~~~~~~~~~~y~~~iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~~~~Gi~~i~~g~K 257 (265) T Consensus 159 fs~p~~~~~~~~y~~Y~~~ilP~ig~~~~~~~~aY~YL~~Si~~fp~~~~~~~~l~~aGF~~v~~~~l~~Gi~~i~~~~K 238 (239) T PRK00216 159 FSKPTNPPLKKAYDFYLFKVLPLIGKLVSKNAEAYRYLAESIRAFPDQEELAAMMEEAGFERVKYRNLTGGIVALHVGYK 238 (239) T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCEEEEEEEEC T ss_conf 58999768899999999999999999971987888769999998889999999999879967889987887699999989 Q ss_pred E Q ss_conf 1 Q gi|254780624|r 258 C 258 (265) Q Consensus 258 p 258 (265) T Consensus 239 p 239 (239) T PRK00216 239 P 239 (239) T ss_pred C T ss_conf 2 |
|
| >pfam01209 Ubie_methyltran ubiE/COQ5 methyltransferase family | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=488.03 Aligned_cols=230 Identities=41% Similarity=0.768 Sum_probs=221.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCC Q ss_conf 99999999998763421157667614801799999985206446799779860233557777766413886327872133 Q gi|254780624|r 25 EKQNMVNHVFSRVSHRYDVMNDLMSLGLHRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADIN 104 (265) Q Consensus 25 ~k~~~v~~~F~~iA~~YD~~N~~~S~G~~r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s 104 (265) T Consensus 4 ~K~~~V~~mF~~Ia~~YD~~N~~~S~G~~~~WR~~~v~~~~~~~g--~~vLDl~cGTG~~~~~l~~~~~~~~~v~gvD~S 81 (233) T pfam01209 4 LKEQRVGDVFSSVASKYDLMNDVISFGIHRLWKDFTMKCMGVKRG--NKFLDVAGGTGDWTFGLSDSAGSSGKVVGLDIN 81 (233) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCC--CEEEEECCCCCHHHHHHHHHHCCCCEEEEEECC T ss_conf 089999999986365887888786073499999999986189999--989982540588999999984999749999699 Q ss_pred CCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCCC Q ss_conf 22221111000001122222222222333457554467403664201321344320121000485211776305544551 Q gi|254780624|r 105 NEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGP 184 (265) Q Consensus 105 ~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~ 184 (265) T Consensus 82 ~~ML~~a~~k~~~~~~-~~i~~~~~da~~lpf~d~sfD~v~~~fglrn~~d~~~al~E~~RVLKPGG~l~ilefs~P~~~ 160 (233) T pfam01209 82 ENMLKEGEKKAKEEGK-YNIEFLQGNAEELPFEDDSFDIVTISFGLRNFPDYLKVLKEAFRVLKPGGRVVCLEFSKPENP 160 (233) T ss_pred HHHHHHHHHHHHHCCC-CCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCH T ss_conf 9999999999985699-983699821666886665657314210121258889999999987278978999978888777 Q ss_pred HHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCEEEEEEEEE Q ss_conf 0112345653111332102542887686578999996899899999999759953799985566499999981 Q gi|254780624|r 185 VFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNYTNGVVALHSGWK 257 (265) Q Consensus 185 ~~~~~~~~y~~~iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~~~~Gi~~i~~g~K 257 (265) T Consensus 161 ~~~~~~~~Y~~~ilP~ig~~~~~~~~aY~YL~~Si~~fp~~~~~~~~l~~~GF~~v~~~~l~~Gi~~i~~g~K 233 (233) T pfam01209 161 LLSQAYELYFKYVMPFMGKMFAKSYKSYQYLQESIRDFPDQKTLASMFEKAGFKSVGYESLTGGIAAIHWGIK 233 (233) T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCEEEEEEEEC T ss_conf 9999999999535999779984998998519999998799999999999879977789987773789999979 |
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=450.03 Aligned_cols=237 Identities=48% Similarity=0.865 Sum_probs=225.0 Q ss_pred CEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCE Q ss_conf 21279899999999999876342115766761480179999998520644679977986023355777776641388632 Q gi|254780624|r 18 FREVPEEEKQNMVNHVFSRVSHRYDVMNDLMSLGLHRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQ 97 (265) Q Consensus 18 f~~v~~~~k~~~v~~~F~~iA~~YD~~N~~~S~G~~r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~ 97 (265) T Consensus 1 ~~~~~~~~k~~~v~~vF~~ia~~YD~~n~~~S~g~~~~Wr~~~i~~~~~~~--g~~vLDva~GTGd~a~~~~k~~g-~g~ 77 (238) T COG2226 1 FKMVAKDEKQEKVQKVFDKVAKKYDLMNDLMSFGLHRLWRRALISLLGIKP--GDKVLDVACGTGDMALLLAKSVG-TGE 77 (238) T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCC--CCEEEEECCCCCHHHHHHHHHCC-CCE T ss_conf 972211244888999987657788754212037403999999998607899--98799966873199999999658-844 Q ss_pred EEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEE Q ss_conf 78721332222111100000112222222222233345755446740366420132134432012100048521177630 Q gi|254780624|r 98 IVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLE 177 (265) Q Consensus 98 v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~d 177 (265) T Consensus 78 v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle 156 (238) T COG2226 78 VVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLE 156 (238) T ss_pred EEEEECCHHHHHHHHHHHHCCCCCC-EEEEEECHHHCCCCCCCCCEEEEEEHHHCCCCHHHHHHHHHHHHCCCEEEEEEE T ss_conf 9999799999999998743247663-279970565498888765889865123527878999999987626874999987 Q ss_pred CCCCCCCHHHHHHHHHHHC-HHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCEEEEEEEE Q ss_conf 5544551011234565311-133210254288768657899999689989999999975995379998556649999998 Q gi|254780624|r 178 FSEVQGPVFKKIYDMWSFK-VIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNYTNGVVALHSGW 256 (265) Q Consensus 178 f~~p~~~~~~~~~~~y~~~-iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~~~~Gi~~i~~g~ 256 (265) T Consensus 157 ~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~~~~~~~G~~~l~~g~ 236 (238) T COG2226 157 FSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVRYENLTFGIVALHRGY 236 (238) T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCEEEECCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEEEEEEEEEEEEEEEEE T ss_conf 68998601699999999974765621211068499999998888589989999999866846876675330169999973 Q ss_pred EE Q ss_conf 11 Q gi|254780624|r 257 KC 258 (265) Q Consensus 257 Kp 258 (265) T Consensus 237 K~ 238 (238) T COG2226 237 KP 238 (238) T ss_pred CC T ss_conf 59 |
|
| >KOG1540 consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=450.77 Aligned_cols=250 Identities=53% Similarity=0.903 Sum_probs=239.0 Q ss_pred CCCCCCEEECCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHH Q ss_conf 45678512115212798999999999998763421157667614801799999985206446799779860233557777 Q gi|254780624|r 7 DSDNNMKTSYGFREVPEEEKQNMVNHVFSRVSHRYDVMNDLMSLGLHRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAF 86 (265) Q Consensus 7 ~~~~~~~~~fGf~~v~~~~k~~~v~~~F~~iA~~YD~~N~~~S~G~~r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~ 86 (265) T Consensus 39 ~~~~~~~Thfgf~tV~e~eke~~V~~vF~~vA~~YD~mND~mSlGiHRlWKd~~v~~L~p~~~--m~~lDvaGGTGDiaF 116 (296) T KOG1540 39 LSVASKCTHFGFKTVRESEKERLVHHVFESVAKKYDIMNDAMSLGIHRLWKDMFVSKLGPGKG--MKVLDVAGGTGDIAF 116 (296) T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCC--CEEEEECCCCCHHHH T ss_conf 464332143461203655533489999998888887788876212367888876621587778--758983477525677 Q ss_pred HHHHHCCCC-----CEEEEECCCCCCCCCCCCCHHCCCCCCC--CCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHH Q ss_conf 766413886-----3278721332222111100000112222--222222233345755446740366420132134432 Q gi|254780624|r 87 RIAEASDNR-----SQIVVADINNEMLSVGRDRAFKENLQDC--ITFIEANAETLPFEANSFDACTLAFGIRNMPHITLV 159 (265) Q Consensus 87 ~l~~~~~~~-----~~v~giD~s~~Ml~~a~~r~~~~~~~~~--i~~~~~da~~lp~~d~sfD~V~~sf~l~~~~d~~~~ 159 (265) T Consensus 117 ril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~ 196 (296) T KOG1540 117 RILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKA 196 (296) T ss_pred HHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEECCEECCCCHHHH T ss_conf 79876113457777617999389899999987775159776871699947701089997751158884211147877899 Q ss_pred HCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCE Q ss_conf 01210004852117763055445510112345653111332102542887686578999996899899999999759953 Q gi|254780624|r 160 LQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSN 239 (265) Q Consensus 160 l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~ 239 (265) T Consensus 197 l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~qe~f~~miedaGF~~ 276 (296) T KOG1540 197 LREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPPQEEFASMIEDAGFSS 276 (296) T ss_pred HHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCC T ss_conf 99998752778679999735454077899997122232110557665217654547766506998899999999728751 Q ss_pred EE-EEECCCCEEEEEEEEEE Q ss_conf 79-99855664999999811 Q gi|254780624|r 240 VS-FTNYTNGVVALHSGWKC 258 (265) Q Consensus 240 v~-~~~~~~Gi~~i~~g~Kp 258 (265) T Consensus 277 ~~~ye~lt~Gv~aIH~giK~ 296 (296) T KOG1540 277 VNGYENLTFGVVAIHSGIKL 296 (296) T ss_pred CCCCCCCEEEEEEEEHHCCC T ss_conf 02304421245454202269 |
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=416.60 Aligned_cols=217 Identities=19% Similarity=0.349 Sum_probs=196.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC-CCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECC Q ss_conf 999999999987634211576676148017999999852064467-9977986023355777776641388632787213 Q gi|254780624|r 25 EKQNMVNHVFSRVSHRYDVMNDLMSLGLHRFWKEAMVTNLNPRKS-KDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADI 103 (265) Q Consensus 25 ~k~~~v~~~F~~iA~~YD~~N~~~S~G~~r~Wr~~~i~~l~~~~~-~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~ 103 (265) T Consensus 5 ~~~e~V~~mF~~IA~~YD~~N~~mSlG~~~~Wrr~~v~~~~~~~~~~~~~vLDva~GTGd~a~~l~~~----~~v~~~D~ 80 (225) T PRK05785 5 ASWEELQEAYNKIPKAYERANRLITFGNVDRWRAEAVKLIYKYDGKSPLKVLDAGAGPGNMAYHLRKI----RYVVALDY 80 (225) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHCC----CEEEEEEC T ss_conf 88899999999887789988889828970999999999987306788882899568843999996347----86999988 Q ss_pred CCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCC Q ss_conf 32222111100000112222222222233345755446740366420132134432012100048521177630554455 Q gi|254780624|r 104 NNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQG 183 (265) Q Consensus 104 s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~ 183 (265) T Consensus 81 s~~ML~~a~~~~---------~~v~~~ae~LPf~d~sFD~vt~~FglRN~~d~~~al~E~~RVlk~---~~iLe~s~P~~ 148 (225) T PRK05785 81 TEEMLRLNLVAD---------DKVVGSFEAMPFRDKSFDLVMSGYALHASDDIEKAVAEFSRVSRY---QVVVAIGKPDN 148 (225) T ss_pred CHHHHHHHHHCC---------CCEEEHHHHCCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHCCC---EEEEEECCCCC T ss_conf 999999876432---------113731853999988252776344300488899999999973097---79999689984 Q ss_pred CHHHHHHHHHHHCHHHHHHHHHCCCHHH--HHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCEEEEEEEEEE Q ss_conf 1011234565311133210254288768--65789999968998999999997599537999855664999999811 Q gi|254780624|r 184 PVFKKIYDMWSFKVIPQLGRFIAGDEEP--YQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNYTNGVVALHSGWKC 258 (265) Q Consensus 184 ~~~~~~~~~y~~~iiP~~g~~~~~~~~~--Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~~~~Gi~~i~~g~Kp 258 (265) T Consensus 149 ~~~r~~y~~Y~~~ilP~ig~l~~~~~~a~~Y~YL~~SI~~fP~~~~l~~~l~~~~~~~~-~~~~~~Giv~i~~g~K~ 224 (225) T PRK05785 149 VVARKLLSFYLKYILPYLACLVGPKEVCREYKKIYYIYKRLPTNSQLRQIISRYADIKV-FEEKALGLVYFYVASSR 224 (225) T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCEEE-EECCCCCEEEEEEEEEC T ss_conf 78999999999656898628870999875241799999987999999999998487478-75066567999999808 |
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase; InterPro: IPR014122 MenG is a generic term for a methyltransferase that catalyses the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=340.04 Aligned_cols=230 Identities=35% Similarity=0.656 Sum_probs=222.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCC Q ss_conf 99999999998763421157667614801799999985206446799779860233557777766413886327872133 Q gi|254780624|r 25 EKQNMVNHVFSRVSHRYDVMNDLMSLGLHRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADIN 104 (265) Q Consensus 25 ~k~~~v~~~F~~iA~~YD~~N~~~S~G~~r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s 104 (265) T Consensus 2 ~ke~~vh~vf~~i~~~yd~mnsvis~~~h~~Wr~~~m~~m~v~~G~--~~ldvCCGt~dW~~~l~~~~G~~G~v~Gldfs 79 (231) T TIGR02752 2 SKEERVHKVFEKIYKKYDRMNSVISFQRHKKWRKDTMKRMNVQKGK--KALDVCCGTADWAIALAEAVGKEGEVKGLDFS 79 (231) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--HHHHHCCCCHHHHHHHHHHHCCCCCEEEEHHH T ss_conf 4356899999999875435777888898888999998776564041--21121037337888988861777716740035 Q ss_pred CCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCCC Q ss_conf 22221111000001122222222222333457554467403664201321344320121000485211776305544551 Q gi|254780624|r 105 NEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGP 184 (265) Q Consensus 105 ~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~ 184 (265) T Consensus 80 ~nml~~~~~k~~~~~~-~~~~l~hGnam~lP~~~~~fdyvtiGfGlrnvPdy~~vl~em~rv~kPGG~~~C~~tsqP~~~ 158 (231) T TIGR02752 80 ENMLSVGKQKVKDAKL-SNVELVHGNAMELPYDDNSFDYVTIGFGLRNVPDYMTVLKEMARVVKPGGKVVCLETSQPTLP 158 (231) T ss_pred HHHHHHHHHHHHHHHH-HHEEEECCCHHCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHH T ss_conf 8899999988875432-002223052001787766612577525512302699999998886279971798625776257 Q ss_pred HHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCEEEEEEEEE Q ss_conf 0112345653111332102542887686578999996899899999999759953799985566499999981 Q gi|254780624|r 185 VFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNYTNGVVALHSGWK 257 (265) Q Consensus 185 ~~~~~~~~y~~~iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~~~~Gi~~i~~g~K 257 (265) T Consensus 159 ~~~q~y~~yf~~~mP~~Gk~~ak~y~eysWlqes~~~fPG~~~l~~~f~~~G~~~v~~~~~~~G~~a~h~G~k 231 (231) T TIGR02752 159 GFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESAREFPGKDELAEMFKEAGLKDVEVKSYTGGVAAMHLGFK 231 (231) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHEEEEECCCCHHHHHCCCC T ss_conf 9999999999999887778886433455777777651786789999998527011223100132123211579 |
Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.. |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=233.17 Aligned_cols=168 Identities=26% Similarity=0.432 Sum_probs=135.9 Q ss_pred HHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC Q ss_conf 79999998520644679977986023355777776641388632787213322221111000001122222222222333 Q gi|254780624|r 54 RFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET 133 (265) Q Consensus 54 r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~ 133 (265) T Consensus 5 ~~~r~~~l~~L~l~pG~--~vLDiGcG~G~~~~~la~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~ 80 (241) T PRK08317 5 RRYRARTFELLAVQPGE--RVLDVGCGPGNDLRELADRVGPEGRVVGIDRSEAMLALARERAAGLL--SNVEFVRGDADG 80 (241) T ss_pred HHHHHHHHHHCCCCCCC--EEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCC--CCEEEEECCHHH T ss_conf 89999999736999979--99996641749999999974999789999698899999999986228--964999554643 Q ss_pred CCCCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEECCC------CCC-CHHHHHHHHHHHCHHHHHHHHHC Q ss_conf 45755446740366420132134432012100048521177630554------455-10112345653111332102542 Q gi|254780624|r 134 LPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSE------VQG-PVFKKIYDMWSFKVIPQLGRFIA 206 (265) Q Consensus 134 lp~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~------p~~-~~~~~~~~~y~~~iiP~~g~~~~ 206 (265) T Consensus 81 lp~~d~sfD~v~~~~~l~h~~d~~~~l~e~~RvLkPGG~~vi~d~Dw~~~~~~~~~~~~~~~i~~~~~~~~--------- 151 (241) T PRK08317 81 LPFPDESFDAVRSDRVLQHLEDPRRALAEMARVLRPGGRAVVLDTDWDTLVIHSGDRALMRKILNFWSDHF--------- 151 (241) T ss_pred CCCCCCCCCEEEHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHC--------- T ss_conf 58988870456221157622589999999999818883899996678867428988899999999999747--------- Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 88768657899999689989999999975995379998556 Q gi|254780624|r 207 GDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNYTN 247 (265) Q Consensus 207 ~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~~~~ 247 (265) T Consensus 152 ~~--~-----------~~gr~L~~~l~~aG~~~v~~~~~~~ 179 (241) T PRK08317 152 AN--P-----------WLGRRLPGLFREAGLTDIEVEPYTL 179 (241) T ss_pred CC--C-----------HHHHHHHHHHHHCCCCEEEEEEEEE T ss_conf 89--2-----------0789999999986990568888778 |
|
| >PRK05134 3-demethylubiquinone-9 3-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-29 Score=208.79 Aligned_cols=201 Identities=21% Similarity=0.319 Sum_probs=148.3 Q ss_pred HHHHHHHHH-HHH---HHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCC Q ss_conf 998763421-157---6676148017999999852064467997798602335577777664138863278721332222 Q gi|254780624|r 33 VFSRVSHRY-DVM---NDLMSLGLHRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEML 108 (265) Q Consensus 33 ~F~~iA~~Y-D~~---N~~~S~G~~r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml 108 (265) T Consensus 11 ~F~~la~~WWd~~g~~~~Lh~~N~~R~--~~i~~~~~~--l~G~~ILDVGCGgG~lse~LAr~G---a~VtGID~S~~~I 83 (233) T PRK05134 11 KFSALAARWWDPNGEFKPLHRINPLRL--NYIREHAGG--LFGKRVLDVGCGGGILSESMARLG---ATVTGIDASEENI 83 (233) T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHH--HHHHHHCCC--CCCCEEEEECCCCCHHHHHHHHCC---CEEEEECCCHHHH T ss_conf 999889984799999607888369999--999975146--689989997558971128999679---9799987998999 Q ss_pred CCCCCCHHCCCCCCCCCCCCCCCCCC-CCCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHH Q ss_conf 11110000011222222222223334-57554467403664201321344320121000485211776305544551011 Q gi|254780624|r 109 SVGRDRAFKENLQDCITFIEANAETL-PFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFK 187 (265) Q Consensus 109 ~~a~~r~~~~~~~~~i~~~~~da~~l-p~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~ 187 (265) T Consensus 84 ~~Ar~ha~~~~l--~i~y~~~~~e~l~~~~~~~FDvV~~~EVlEHV~d~~~~l~~~~rlLKPGG~l~---lsTiNrt~~S 158 (233) T PRK05134 84 EVARLHALESGL--KIDYRQITAEELAAEHPGQFDVVTCMEMLEHVPDPASFIRACAKLVKPGGLVF---FSTLNRNLKS 158 (233) T ss_pred HHHHHHHHHCCC--CCEEEECCHHHHHHHCCCCEEEEEEEHHHHHCCCHHHHHHHHHHHHCCCCEEE---EECCCCCHHH T ss_conf 999998564434--51167514766543057863477442147753899999999999738991499---9726789899 Q ss_pred HHHHH----HHHCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCC-------------CEE Q ss_conf 23456----5311133210254288768657899999689989999999975995379998556-------------649 Q gi|254780624|r 188 KIYDM----WSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNYTN-------------GVV 250 (265) Q Consensus 188 ~~~~~----y~~~iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~~~~-------------Gi~ 250 (265) T Consensus 159 ~l~~i~~AEyil~~vP-------~gTH~w-------~kFi~P~el~~~l~~~~~~~~~~~G~~ynp~~~~w~~~~~~~vN 224 (233) T PRK05134 159 YLLAIVGAEYILRMLP-------KGTHDY-------KKFIKPSELAAWLRQAGLEVQDIKGLTYNPLTNRWKLSDDVDVN 224 (233) T ss_pred HHHHHHHHHHHHCCCC-------CCCCCH-------HHCCCHHHHHHHHHHCCCEEEEEEEEEEECCCCEEEECCCCCCC T ss_conf 9999999988860499-------998586-------66799999999999879957210007996567938988999814 Q ss_pred EEEEEEEEC Q ss_conf 999998116 Q gi|254780624|r 251 ALHSGWKCE 259 (265) Q Consensus 251 ~i~~g~Kp~ 259 (265) T Consensus 225 Y~~~~~K~~ 233 (233) T PRK05134 225 YMLAARKPA 233 (233) T ss_pred EEEEEECCC T ss_conf 589987189 |
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=205.05 Aligned_cols=171 Identities=20% Similarity=0.341 Sum_probs=136.5 Q ss_pred HHHHC-CCHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCC Q ss_conf 67614-80179999998520644679977986023355777776641388632787213322221111000001122222 Q gi|254780624|r 46 DLMSL-GLHRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCI 124 (265) Q Consensus 46 ~~~S~-G~~r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i 124 (265) T Consensus 31 Gf~SpGG~e~~--~~~l~~l~L~~~--~kVLDvGCG~GG~a~~LA~~yg--~~V~GiDls~~~~~~A~er~~~---~~~v 101 (263) T PTZ00098 31 DYISSGGIEAT--KKILSDIELDAN--SKVLDIGSGLGGGCKYINEKYG--AHTHGIDICEKIVNIAKERNQD---KAKI 101 (263) T ss_pred CCCCCCCHHHH--HHHHHCCCCCCC--CEEEEECCCCCHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHCCC---CCCE T ss_conf 98899956899--999850488999--8688868887889999999749--8799985889999999985512---5854 Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEECCCH--HHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHH Q ss_conf 222222333457554467403664201321--344320121000485211776305544551011234565311133210 Q gi|254780624|r 125 TFIEANAETLPFEANSFDACTLAFGIRNMP--HITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLG 202 (265) Q Consensus 125 ~~~~~da~~lp~~d~sfD~V~~sf~l~~~~--d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~iiP~~g 202 (265) T Consensus 102 ~f~~~d~~~~~f~d~sFDvV~S~dailHip~~DK~~l~~e~~RvLKPGG~llitDw~~~~~~~~s~~~~~yi~~------ 175 (263) T PTZ00098 102 EFEAKDILKKDFPENNFDLIYSRDAILHLSLADKKKLFEKCYKWLKPNGILLITDYCADEIENWDDEFKAYIKK------ 175 (263) T ss_pred EEEECCCCCCCCCCCCEEEEEEEHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHH------ T ss_conf 89967853677886745589875022308824399999999998468878999750135789973989999984------ Q ss_pred HHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECC Q ss_conf 25428876865789999968998999999997599537999855 Q gi|254780624|r 203 RFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNYT 246 (265) Q Consensus 203 ~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~~~ 246 (265) T Consensus 176 r-------~~--------~l~s~~~Y~~~l~~aGF~~v~~~Drt 204 (263) T PTZ00098 176 R-------KY--------TLIPIEEYADIIKACKFKNVEAKDIS 204 (263) T ss_pred C-------CC--------CCCCHHHHHHHHHHCCCCEEEEECCH T ss_conf 6-------87--------66799999999997799667875142 |
|
| >TIGR02072 BioC biotin biosynthesis protein BioC; InterPro: IPR011814 This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulphur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable) | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.2e-28 Score=199.38 Aligned_cols=189 Identities=24% Similarity=0.420 Sum_probs=144.9 Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC---CCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC Q ss_conf 98763421157667614801799999985206446---799779860233557777766413886327872133222211 Q gi|254780624|r 34 FSRVSHRYDVMNDLMSLGLHRFWKEAMVTNLNPRK---SKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSV 110 (265) Q Consensus 34 F~~iA~~YD~~N~~~S~G~~r~Wr~~~i~~l~~~~---~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~ 110 (265) T Consensus 2 F~~A~~~Yd~~A~~-----Qr~~~~~Ll~~L~~~~~~~~~~~~vLd~GcGTG~~t~~l~~~~-~~~~~~a~D~~~~ml~~ 75 (272) T TIGR02072 2 FSKAAKTYDRHAKI-----QREMAKRLLALLKEKRPSHFEPASVLDIGCGTGYLTRALLKRF-PQAELIALDISEEMLAQ 75 (272) T ss_pred CCHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHHC-CCCEEHHHHCCHHHHHH T ss_conf 20115205666799-----9999999999887407654455435651268548999999868-80012333325678999 Q ss_pred CCCCHH----CCCCCCCCCCCCCCCCCCCCCCCC--CCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCCC Q ss_conf 110000----011222222222223334575544--67403664201321344320121000485211776305544551 Q gi|254780624|r 111 GRDRAF----KENLQDCITFIEANAETLPFEANS--FDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGP 184 (265) Q Consensus 111 a~~r~~----~~~~~~~i~~~~~da~~lp~~d~s--fD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~ 184 (265) T Consensus 76 a~~~~~~GWW~~~-~~~~~f~~gD~E~l~~~~~~~~~DLI~Sn~a~QW~~~~~~~l~~l~~~lk~gG~l~---FStf~~~ 151 (272) T TIGR02072 76 AKEKLSEGWWQKN-LKAVQFICGDIEKLPLEDSSFKFDLIVSNLALQWCDDLSQALSELARVLKPGGLLA---FSTFGPG 151 (272) T ss_pred HHHHCCCCCCCCC-CHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEE---EEECCCH T ss_conf 9974467886576-04566666377717887663034127563588710478899999997528796899---8613541 Q ss_pred HHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEEC Q ss_conf 0112345653111332102542887686578999996899899999999759953799985 Q gi|254780624|r 185 VFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNY 245 (265) Q Consensus 185 ~~~~~~~~y~~~iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~~ 245 (265) T Consensus 152 ~l~El~~~~~~-----~~~~I--D~~~------~~~~y~~~~~~~~~l~~~~f~~~~~~~~ 199 (272) T TIGR02072 152 TLKELRQSFGQ-----VSELI--DERS------HGLRYLSLDELKALLKNDGFELLKLEEE 199 (272) T ss_pred HHHHHHHHHHH-----HHHHH--CCCC------CCCCCCCHHHHHHHHHHCCCCEEEEEEE T ss_conf 34999999999-----99740--7654------6789989899999986159841578886 |
The enzyme appears related to methyltransferases by homology.; GO: 0009102 biotin biosynthetic process. |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-23 Score=172.47 Aligned_cols=172 Identities=14% Similarity=0.154 Sum_probs=122.6 Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHC Q ss_conf 34211576676148017999999852064467997798602335577777664138863278721332222111100000 Q gi|254780624|r 38 SHRYDVMNDLMSLGLHRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFK 117 (265) Q Consensus 38 A~~YD~~N~~~S~G~~r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~ 117 (265) T Consensus 6 p~~Y~rf~~~-----r~rp~~DLl~~l~~~~~--~~vlDlGCG~G~~t~~l~~r~-p~a~v~GiD~S~~Ml~~Ar~~~-- 75 (252) T PRK01683 6 PSLYLQFEAE-----RTRPAVELLARVPLENV--EYVADLGCGPGNSTALLHQRW-PAARITGIDSSPAMLAEARQAL-- 75 (252) T ss_pred HHHHHHHHHH-----HHCHHHHHHHCCCCCCC--CEEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHC-- T ss_conf 9999988877-----64639999841888899--989993774989999999977-9987999989899999999758-- Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCH Q ss_conf 11222222222223334575544674036642013213443201210004852117763055445510112345653111 Q gi|254780624|r 118 ENLQDCITFIEANAETLPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKV 197 (265) Q Consensus 118 ~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~i 197 (265) T Consensus 76 ----~~~~f~~~D~~~~~~-~~~~D~ifSNaalhW~~d~~~~~~~~~~~L~PGG~la~Q-~--p~n~~-~~sh~-----l 141 (252) T PRK01683 76 ----PDCQFVEADIRNWQP-EQALDLIYANASLQWLPDHYELFPHLVSLLAPQGVLAVQ-M--PDNWL-EPSHV-----L 141 (252) T ss_pred ----CCCEEEECCHHCCCC-CCCCCEEEEEEEHHHCCCHHHHHHHHHHHCCCCCEEEEE-C--CCCCC-CHHHH-----H T ss_conf ----998387250420787-678788956100450787799999999824878799998-8--98757-69999-----9 Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEE Q ss_conf 33210254288768657899999689989999999975995379 Q gi|254780624|r 198 IPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVS 241 (265) Q Consensus 198 iP~~g~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~ 241 (265) T Consensus 142 ~~e~a~-----~~~~~~--~~~~~~~~~~~Y~~lL~~~g~~-v~ 177 (252) T PRK01683 142 MREVAW-----EQNYPD--RGREPLLGVHAYYDLLAEAGCE-VD 177 (252) T ss_pred HHHHHH-----HHHCCC--CCCCCCCCHHHHHHHHHHCCCE-EE T ss_conf 999986-----654240--1366789989999999857873-66 |
|
| >PRK11036 putative metallothionein SmtA; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.1e-23 Score=168.50 Aligned_cols=194 Identities=19% Similarity=0.315 Sum_probs=131.0 Q ss_pred HHHHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCC Q ss_conf 998763421157667614801-------7999999852064467997798602335577777664138863278721332 Q gi|254780624|r 33 VFSRVSHRYDVMNDLMSLGLH-------RFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINN 105 (265) Q Consensus 33 ~F~~iA~~YD~~N~~~S~G~~-------r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~ 105 (265) T Consensus 5 nFd~ia~kF~~--~i--Ygt~KG~iR~avl~~-dl~~~l~~l~~~plrVLDvG~G~G~~a~~lA~~G---h~Vt~~D~S~ 76 (256) T PRK11036 5 NFDDIAEKFSR--NI--YGTTKGQIRQAIVWQ-DLDRLLAELGPRPLRVLDAGGGEGQTAIKMAELG---HQVTLCDLSA 76 (256) T ss_pred CHHHHHHHHHH--HC--CCCCCHHHHHHHHHH-HHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCC---CEEEEECCCH T ss_conf 46678999998--45--477722899999999-9999998469999839983798779899999779---9799866999 Q ss_pred CCCCCCCCCHHCCCCCCCCCCCCCCCCCCC-CCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCCC Q ss_conf 222111100000112222222222233345-7554467403664201321344320121000485211776305544551 Q gi|254780624|r 106 EMLSVGRDRAFKENLQDCITFIEANAETLP-FEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGP 184 (265) Q Consensus 106 ~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp-~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~ 184 (265) T Consensus 77 ~mL~~A~~~a~~~gv~~~~~~v~~~~q~l~~~~~~~fDlVlcHaVLE~v~dP~~~l~~l~~~lkPGG~lSLmfyN~-~al 155 (256) T PRK11036 77 EMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNA-NGL 155 (256) T ss_pred HHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHCCCCCCEEEEEHHHHHCCCHHHHHHHHHHHHCCCCEEEEEECCH-HHH T ss_conf 9999999998864966127988568998854236886678651367723789999999999758993799984285-169 Q ss_pred HHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEE Q ss_conf 01123456531113321025428876865789999968998999999997599537999 Q gi|254780624|r 185 VFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFT 243 (265) Q Consensus 185 ~~~~~~~~y~~~iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~ 243 (265) T Consensus 156 v~~n~l~Gnf~~a~~---~~~~~~~~---~LtP--~~p~~p~~V~~~l~~~g~~i~~~~ 206 (256) T PRK11036 156 LMHNMVAGNFDYVQA---GMPKRKKR---TLSP--QYPRDPAQVYQWLEEAGWQIMGKT 206 (256) T ss_pred HHHHHHHCCHHHHHH---HCCCCCCC---CCCC--CCCCCHHHHHHHHHHCCCEEEEEE T ss_conf 999998258999973---06344552---1689--999999999999997798277667 |
|
| >pfam02353 CMAS Cyclopropane-fatty-acyl-phospholipid synthase | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-22 Score=166.02 Aligned_cols=188 Identities=18% Similarity=0.305 Sum_probs=142.0 Q ss_pred HHHHHHHHHHHHHHHCCCHH-------HH--------------HHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCC Q ss_conf 87634211576676148017-------99--------------9999852064467997798602335577777664138 Q gi|254780624|r 35 SRVSHRYDVMNDLMSLGLHR-------FW--------------KEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASD 93 (265) Q Consensus 35 ~~iA~~YD~~N~~~S~G~~r-------~W--------------r~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~ 93 (265) T Consensus 8 ~nI~~HYDl~ndFy~~~Ld~~m~YSca~f~~~~~tLe~AQ~~Kl~~i~~~l~l~~g--~~vLDiGCGWG~~a~~~a~~~g 85 (273) T pfam02353 8 ENIQAHYDLSNDFFALFLDPTMTYSCAYFERPDMTLEEAQQAKLDLILDKLGLKPG--MTLLDIGCGWGGLMRRAAERYD 85 (273) T ss_pred HHHHHHCCCCHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCCC--CEEEEECCCCHHHHHHHHHHCC T ss_conf 99999758988999987696998865571799999999999999999986588999--9899978880899999998479 Q ss_pred CCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC--HHHHHHHCCCCHHCCCCC Q ss_conf 863278721332222111100000112222222222233345755446740366420132--134432012100048521 Q gi|254780624|r 94 NRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFGIRNM--PHITLVLQEIYRILKCGG 171 (265) Q Consensus 94 ~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~~~--~d~~~~l~e~~RvLKpGG 171 (265) T Consensus 86 --~~v~giTlS~~Q~~~~~~r~~~~gl~~~v~v~~~Dyrd~---~~~fD~IvSiem~Ehvg~~~~~~~f~~i~~~LkpgG 160 (273) T pfam02353 86 --VNVVGLTLSKNQYKLARQRVAAEGLQRKVEVLLQDYRDF---DEPFDRIVSVGMFEHVGHENYDTFFKKLYNLLPPGG 160 (273) T ss_pred --CEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEECCHHHC---CCCCCEEEEEHHHHHCCHHHHHHHHHHHHHHCCCCC T ss_conf --518999797899999999998708743212000626547---666666776516876287779999999998658897 Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEEC Q ss_conf 17763055445510112345653111332102542887686578999996899899999999759953799985 Q gi|254780624|r 172 RLLVLEFSEVQGPVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNY 245 (265) Q Consensus 172 ~~~i~df~~p~~~~~~~~~~~y~~~iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~~ 245 (265) T Consensus 161 ~~~iq~i~~~~~~~~~~-----~~~~~~fi~kyIFPG-----------G~lPs~~~~~~~~~~~~l~v~~~~~~ 218 (273) T pfam02353 161 LMLLHTITGLHPDETSE-----RGLPLKFIDKYIFPG-----------GELPSISMIVESSSEAGFTVEDVESL 218 (273) T ss_pred EEEEEEEECCCCCCHHH-----CCCCCCHHHHHCCCC-----------CCCCCHHHHHHHHHHCCCEEEEEEEC T ss_conf 39999994257321010-----277420077760799-----------87899999999998689488676767 |
This family consist of Cyclopropane-fatty-acyl-phospholipid synthase or CFA synthase EC:2.1.1.79 this enzyme catalyse the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid <= S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.6e-22 Score=161.31 Aligned_cols=198 Identities=21% Similarity=0.322 Sum_probs=138.5 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH------------CCCHHHHHHHHHHHHCCC-CCCCCEEEECCHHHHHHHHHH Q ss_conf 9899999999999876342115766761------------480179999998520644-679977986023355777776 Q gi|254780624|r 22 PEEEKQNMVNHVFSRVSHRYDVMNDLMS------------LGLHRFWKEAMVTNLNPR-KSKDYRVLDVAGGTGDVAFRI 88 (265) Q Consensus 22 ~~~~k~~~v~~~F~~iA~~YD~~N~~~S------------~G~~r~Wr~~~i~~l~~~-~~~~~~iLDiGcGTG~~~~~l 88 (265) T Consensus 5 ~y~~~r~~v~~YFd~ta~--~~W~rltsd~pVs~vr~tVR~Gr~~m-r~~~l~wl~~~~dl~G~rVLDaGCGtG~la~~L 81 (230) T PRK07580 5 NYLEHKSEVRTYFNGTGF--DRWARIYSDAPVSKVRATVRAGHQRM-RDTVLSWLPADGDLTGLSILDAGCGTGSLSIPL 81 (230) T ss_pred CHHHHHHHHHHHHCCHHH--HHHHHHHCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHH T ss_conf 788999999998464789--99999708897259999999769999-999999731059978998988187867879999 Q ss_pred HHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCH--HHHHHHCCCCHH Q ss_conf 641388632787213322221111000001122222222222333457554467403664201321--344320121000 Q gi|254780624|r 89 AEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFGIRNMP--HITLVLQEIYRI 166 (265) Q Consensus 89 ~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~~~~--d~~~~l~e~~Rv 166 (265) T Consensus 82 A~~G---a~V~avDiS~~mi~~A~~Ra~~~g~~~~v~F~~gDle~~---~G~FD~Vv~mdvLiHYp~~d~~~~l~~la~- 154 (230) T PRK07580 82 ARRG---AKVVASDISPQMVEEARERAPEAGLDGNITFEVGDLESL---LGSFDTVVCLDVLIHYPQEDAERMLAHLAS- 154 (230) T ss_pred HHCC---CEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEECCCCCC---CCCCCCHHHCCCEEECCHHHHHHHHHHHHH- T ss_conf 9779---989998389999999997558627876753896676545---798660233371554578899999999972- Q ss_pred CCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECC Q ss_conf 48521177630554455101123456531113321025428876865789999968998999999997599537999855 Q gi|254780624|r 167 LKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNYT 246 (265) Q Consensus 167 LKpGG~~~i~df~~p~~~~~~~~~~~y~~~iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~~~ 246 (265) T Consensus 155 -~~~~~~ifT--fAP~T~lL~~m~---------~iGklFP~~drsp~------~~p~~~~~l~~~l~~~g~~v~r~~ri~ 216 (230) T PRK07580 155 -LTRGSLIFT--FAPYTPLLALLH---------WIGGFFPGPSRTTR------IYPHREKGIRRALAEAGFKVVRTERIS 216 (230) T ss_pred -CCCCEEEEE--ECCCCHHHHHHH---------HHHHHCCCCCCCCC------EEECCHHHHHHHHHHCCCEEEECCCCC T ss_conf -558859999--689869999999---------98643899999972------697388999999996698675123325 Q ss_pred C Q ss_conf 6 Q gi|254780624|r 247 N 247 (265) Q Consensus 247 ~ 247 (265) T Consensus 217 ~ 217 (230) T PRK07580 217 S 217 (230) T ss_pred C T ss_conf 6 |
|
| >KOG4300 consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.5e-22 Score=161.81 Aligned_cols=187 Identities=18% Similarity=0.286 Sum_probs=135.4 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH---HCCCCCCCCEEEECCHHHHHHHHHHHHHCC--CCCEEEEECCCC Q ss_conf 999987634211576676148017999999852---064467997798602335577777664138--863278721332 Q gi|254780624|r 31 NHVFSRVSHRYDVMNDLMSLGLHRFWKEAMVTN---LNPRKSKDYRVLDVAGGTGDVAFRIAEASD--NRSQIVVADINN 105 (265) Q Consensus 31 ~~~F~~iA~~YD~~N~~~S~G~~r~Wr~~~i~~---l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~--~~~~v~giD~s~ 105 (265) T Consensus 50 t~~yne~~~~yk---------------relFs~i~~~~gk~~K-~~vLEvgcGtG~N----fkfy~~~p~~svt~lDpn~ 109 (252) T KOG4300 50 TSIYNEIADSYK---------------RELFSGIYYFLGKSGK-GDVLEVGCGTGAN----FKFYPWKPINSVTCLDPNE 109 (252) T ss_pred HHHHHHHHHHHH---------------HHHHHHHHHHHCCCCC-CCEEEECCCCCCC----CCCCCCCCCCEEEEECCCH T ss_conf 999999999999---------------9998526877343575-1369961468888----5355578885689867848 Q ss_pred CCCCCCCCCHHCCCCCCCCC-CCCCCCCCCC-CCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCC Q ss_conf 22211110000011222222-2222233345-755446740366420132134432012100048521177630554455 Q gi|254780624|r 106 EMLSVGRDRAFKENLQDCIT-FIEANAETLP-FEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQG 183 (265) Q Consensus 106 ~Ml~~a~~r~~~~~~~~~i~-~~~~da~~lp-~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~ 183 (265) T Consensus 110 ~mee~~~ks~~E~k-~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~y 188 (252) T KOG4300 110 KMEEIADKSAAEKK-PLQVERFVVADGENLPQLADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEY 188 (252) T ss_pred HHHHHHHHHHHHCC-CCCEEEEEEECHHCCCCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEECCCCCC T ss_conf 79999998886425-72057778505210742136771157778887205779999999887508895899972124421 Q ss_pred CHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCEEEEEEE Q ss_conf 101123456531113321025428876865789999968998999999997599537999855664999999 Q gi|254780624|r 184 PVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNYTNGVVALHSG 255 (265) Q Consensus 184 ~~~~~~~~~y~~~iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~~~~Gi~~i~~g 255 (265) T Consensus 189 ~~~n~i~q~v~ep~--------------~~~~~---dGC~ltrd~~e~Leda~f~~~~~kr~~~~ttw~~V~ 243 (252) T KOG4300 189 GFWNRILQQVAEPL--------------WHLES---DGCVLTRDTGELLEDAEFSIDSCKRFNFGTTWVIVE 243 (252) T ss_pred HHHHHHHHHHHCHH--------------HHEEC---CCEEEEHHHHHHHHHCCCCCCHHHCCCCCCEEEEEE T ss_conf 08999999874556--------------65023---445876457777553304411110026883489973 |
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-21 Score=158.44 Aligned_cols=185 Identities=19% Similarity=0.290 Sum_probs=137.6 Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHH---------------------HHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHH Q ss_conf 998763421157667614801799---------------------99998520644679977986023355777776641 Q gi|254780624|r 33 VFSRVSHRYDVMNDLMSLGLHRFW---------------------KEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEA 91 (265) Q Consensus 33 ~F~~iA~~YD~~N~~~S~G~~r~W---------------------r~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~ 91 (265) T Consensus 16 ~~~~i~~HYDl~n~fy~l~Ld~~~~Yscayf~~~~~tL~eAQ~~k~~~~~~kl~L~~G--~~lLDiGCGWG~l~~~aA~~ 93 (283) T COG2230 16 AAENIQAHYDLSNDFYRLFLDPSMTYSCAYFEDPDMTLEEAQRAKLDLILEKLGLKPG--MTLLDIGCGWGGLAIYAAEE 93 (283) T ss_pred HHHHHHHHHHCCHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCC--CEEEEECCCHHHHHHHHHHH T ss_conf 4452066750656899986289876245775799888589999999999975699999--98987478844999999998 Q ss_pred CCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHH--HHHHHCCCCHHCCC Q ss_conf 3886327872133222211110000011222222222223334575544674036642013213--44320121000485 Q gi|254780624|r 92 SDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFGIRNMPH--ITLVLQEIYRILKC 169 (265) Q Consensus 92 ~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~~~~d--~~~~l~e~~RvLKp 169 (265) T Consensus 94 y~--v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~ 168 (283) T COG2230 94 YG--VTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKP 168 (283) T ss_pred CC--CEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCC---CCCCEEEEHHHHHHHCCCCHHHHHHHHHHHCCC T ss_conf 49--9799966899999999999997599766079965621032---434205560068873710289999999964599 Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEE Q ss_conf 211776305544551011234565311133210254288768657899999689989999999975995379998 Q gi|254780624|r 170 GGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTN 244 (265) Q Consensus 170 GG~~~i~df~~p~~~~~~~~~~~y~~~iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~ 244 (265) T Consensus 169 ~G~~llh~I~~~~~~~~--~-------~~~~i~~yiFPgG-----------~lPs~~~i~~~~~~~~~~v~~~~~ 223 (283) T COG2230 169 GGRMLLHSITGPDQEFR--R-------FPDFIDKYIFPGG-----------ELPSISEILELASEAGFVVLDVES 223 (283) T ss_pred CCEEEEEEECCCCCCCC--C-------CHHHHHHHCCCCC-----------CCCCHHHHHHHHHHCCCEEEHHHH T ss_conf 96599999667885544--3-------3278998578998-----------489779999988756868842764 |
|
| >KOG1270 consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-20 Score=153.33 Aligned_cols=197 Identities=17% Similarity=0.299 Sum_probs=134.2 Q ss_pred HHHHHHHHHHHHH-HH---HHHHHHCCCHHH-H-HHHHHHHHCC-CCC----CCCEEEECCHHHHHHHHHHHHHCCCCCE Q ss_conf 9999998763421-15---766761480179-9-9999852064-467----9977986023355777776641388632 Q gi|254780624|r 29 MVNHVFSRVSHRY-DV---MNDLMSLGLHRF-W-KEAMVTNLNP-RKS----KDYRVLDVAGGTGDVAFRIAEASDNRSQ 97 (265) Q Consensus 29 ~v~~~F~~iA~~Y-D~---~N~~~S~G~~r~-W-r~~~i~~l~~-~~~----~~~~iLDiGcGTG~~~~~l~~~~~~~~~ 97 (265) T Consensus 38 eV~~-f~~la~~wwd~~g~~~~Lh~mn~~Rl~fi~d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLSepLArlg---a~ 113 (282) T KOG1270 38 EVKK-FQALAFTWWDEEGVRHPLHSMNQTRLPFIRDDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLSEPLARLG---AQ 113 (282) T ss_pred HHHH-HHHHCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHC---CE T ss_conf 8999-8875434465445111245446433267788787404322887545578647872367550232357508---85 Q ss_pred EEEECCCCCCCCCCCCCHHCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCE Q ss_conf 7872133222211110000011222-----22222222333457554467403664201321344320121000485211 Q gi|254780624|r 98 IVVADINNEMLSVGRDRAFKENLQD-----CITFIEANAETLPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGR 172 (265) Q Consensus 98 v~giD~s~~Ml~~a~~r~~~~~~~~-----~i~~~~~da~~lp~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~ 172 (265) T Consensus 114 V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~---~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~ 190 (282) T KOG1270 114 VTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTG---KFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGR 190 (282) T ss_pred EEEECCHHHHHHHHHHHHHCCCHHCCCCCEEEEHHHCCHHHCCC---CCCEEEEHHHHHHHHCHHHHHHHHHHHHCCCCC T ss_conf 68526559999999875104903305641463020153321456---564544198999874789999999998488982 Q ss_pred EEEEECCCCCCCHH-HHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECC Q ss_conf 77630554455101-123456531113321025428876865789999968998999999997599537999855 Q gi|254780624|r 173 LLVLEFSEVQGPVF-KKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNYT 246 (265) Q Consensus 173 ~~i~df~~p~~~~~-~~~~~~y~~~iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~~~ 246 (265) T Consensus 191 lfittinrt~lS~~~~i~~~E~vl~ivp~G-------th--~~-----ekfi~p~e~~~~l~~~~~~v~~v~G~~ 251 (282) T KOG1270 191 LFITTINRTILSFAGTIFLAEIVLRIVPKG-------TH--TW-----EKFINPEELTSILNANGAQVNDVVGEV 251 (282) T ss_pred EEEEEHHHHHHHHHCCCCHHHHHHHHCCCC-------CC--CH-----HHCCCHHHHHHHHHHCCCCHHHHHCCC T ss_conf 586411233777622112999988645888-------75--77-----870899999999986385343120202 |
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase; InterPro: IPR010251 Chlorophyll and bacteriochlorophyll are essential photosynthetic pigments involved in oxygenic and non-oxygenic photosythesis respectively | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-19 Score=145.77 Aligned_cols=195 Identities=21% Similarity=0.336 Sum_probs=136.3 Q ss_pred HHHHHHHHHHH-----HHH-HHHHHHHH---CCCHHHHHHHHHHHHCCC-CCCCCEEEECCHHHHHHHHHHHHHCCCCCE Q ss_conf 99999998763-----421-15766761---480179999998520644-679977986023355777776641388632 Q gi|254780624|r 28 NMVNHVFSRVS-----HRY-DVMNDLMS---LGLHRFWKEAMVTNLNPR-KSKDYRVLDVAGGTGDVAFRIAEASDNRSQ 97 (265) Q Consensus 28 ~~v~~~F~~iA-----~~Y-D~~N~~~S---~G~~r~Wr~~~i~~l~~~-~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~ 97 (265) T Consensus 3 ~~v~~YFd~~af~rW~~i~~~~vs~~r~~vR~Gr~~~-~~~~l~wL~~d~~l~G~~vlDAGCGtGllsi~LAk~G---A~ 78 (224) T TIGR02021 3 EQVRHYFDGTAFQRWARIYGDPVSRVRQTVREGRAAM-REKLLEWLPKDRSLKGKKVLDAGCGTGLLSIELAKRG---AI 78 (224) T ss_pred CCHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHH-HHHHHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHCC---CE T ss_conf 3021024873889999871673047899999769999-9999985467889876777755889315449888479---86 Q ss_pred EEEECCCCCCCCCCCCCHHCCCCCCC-CCCCCCCCCCCCCCCCCCCCCEEEEEECCCH--HHHHHHCCCCHHCCCCCEEE Q ss_conf 78721332222111100000112222-2222222333457554467403664201321--34432012100048521177 Q gi|254780624|r 98 IVVADINNEMLSVGRDRAFKENLQDC-ITFIEANAETLPFEANSFDACTLAFGIRNMP--HITLVLQEIYRILKCGGRLL 174 (265) Q Consensus 98 v~giD~s~~Ml~~a~~r~~~~~~~~~-i~~~~~da~~lp~~d~sfD~V~~sf~l~~~~--d~~~~l~e~~RvLKpGG~~~ 174 (265) T Consensus 79 V~A~DIS~~mv~~A~~r~~~~~~~~nl~~FeV~Dl~s~~~--G~fD~VV~mDvlIHYp~~d~~~~l~~Laslt~~--~~~ 154 (224) T TIGR02021 79 VKAVDISEQMVELARERAEKEDEAGNLVEFEVNDLESLEL--GKFDAVVAMDVLIHYPAEDIAKALEHLASLTKE--RVI 154 (224) T ss_pred EEEEHHHHHHHHHHHHHCCCCCCCCCCCEEEECCHHHHCC--CCCCEEEEEHHHHHCCHHHHHHHHHHHHHHHCC--CEE T ss_conf 8662376899999986210021016700354530444138--985556752122320222279999998874358--648 Q ss_pred EEECC-CCCCCHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC----CCCEEEEEECCCC Q ss_conf 63055-44551011234565311133210254288768657899999689989999999975----9953799985566 Q gi|254780624|r 175 VLEFS-EVQGPVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAA----GFSNVSFTNYTNG 248 (265) Q Consensus 175 i~df~-~p~~~~~~~~~~~y~~~iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~a----GF~~v~~~~~~~G 248 (265) T Consensus 155 ---ftfAP~T~~l~~~~---------~IG~lFP~s~R~t------~~~~h~~~~~~R~l~~~eallG~~i~~~~~vS~g 215 (224) T TIGR02021 155 ---FTFAPKTAYLAFLK---------AIGELFPRSDRAT------AIYLHPEKDLERALGELEALLGWKISKEGRVSTG 215 (224) T ss_pred ---EEECCCCHHHHHHH---------HHHHCCCCCCCCC------EEEECCCCHHHHHHHHHHHHHCCEEEEECCEEHH T ss_conf ---98678767899999---------8510278898885------1520786038899766766633156631103224 |
They are both synthesised from protoporphyrin IX in complex pathways which share many common steps. The second committed step in both pathways is the methylation of magnesium protoporphyrin IX, catalysed by magnesium protoporphyrin O-methyltransferase with S-adenosyl methionine (SAM) as the methyl donor , , .Sequence alignments suggest that the protein contains the characteristic seven-stranded beta-sheet fold found in other SAM-dependent methyltransferases. This entry represents magnesium protoporphyrin O-methyltransferase from cyanobacteria and plants, where it is known as ChlM, and from other photosynthetic bacteria, where it is known as BchM.; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process. |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-16 Score=127.30 Aligned_cols=182 Identities=18% Similarity=0.178 Sum_probs=116.2 Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCC---CCCEEEEECCCCCCCCCCCCCHHCC Q ss_conf 1576676148017999999852064467997798602335577777664138---8632787213322221111000001 Q gi|254780624|r 42 DVMNDLMSLGLHRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASD---NRSQIVVADINNEMLSVGRDRAFKE 118 (265) Q Consensus 42 D~~N~~~S~G~~r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~---~~~~v~giD~s~~Ml~~a~~r~~~~ 118 (265) T Consensus 35 ~~iN~~l~-g-~~~~~~~~~~~~~~~~~r~~~VLDlGcG~Gdl~~~lar~a~~~g~~l~v~GiD~~~~ai~~Ar~~a~~~ 112 (233) T PRK06202 35 RRINRISA-G-WRGLYRRHLRPALRAPDRPLTVLDLGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAIRFARANARRR 112 (233) T ss_pred HHHHHHHH-H-HHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCC T ss_conf 99999986-4-299999999999758788728998347875799999999975599638999779889999998734036 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHH--HHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHC Q ss_conf 122222222222333457554467403664201321344--320121000485211776305544551011234565311 Q gi|254780624|r 119 NLQDCITFIEANAETLPFEANSFDACTLAFGIRNMPHIT--LVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFK 196 (265) Q Consensus 119 ~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~~~~d~~--~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~ 196 (265) T Consensus 113 ----~~~~~~~~~d~l~~~~~~~DvV~~sl~LHHf~d~ql~~ll~~~~~~ar--~~vvinDL~R-------s~lay~~~~ 179 (233) T PRK06202 113 ----GVTFRFAVSDELVAEGERFDVVYSNHFLHHLDDADVVRLLADMAALAR--RLVLHNDLIR-------SRLAYALAW 179 (233) T ss_pred ----CCCEEEEEHHHHCCCCCCCCEEEHHHHHHCCCHHHHHHHHHHHHHHCC--EEEEECCCCC-------CHHHHHHHH T ss_conf ----983699734320245788757603246864982999999999998638--2699746532-------765899999 Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEE Q ss_conf 13321025428876865789999968998999999997599537999 Q gi|254780624|r 197 VIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFT 243 (265) Q Consensus 197 iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~ 243 (265) T Consensus 180 ---l~~~l~~~~~~~r~DG~~Sv~raf~~~El~~l~~~-~~~-i~~~ 221 (233) T PRK06202 180 ---AGTRLLSRSSFVHTDGLLSVRRSFTPAELAALAPQ-GWR-VERS 221 (233) T ss_pred ---HHHHHHCCCCEEECCCHHHHHHHCCHHHHHHHCCC-CCE-EECC T ss_conf ---99888636964420518899986699999987146-877-7126 |
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.1e-15 Score=116.95 Aligned_cols=198 Identities=23% Similarity=0.324 Sum_probs=130.0 Q ss_pred ECCHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCHHHH-HHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCE Q ss_conf 2798999999999998763421157-667614801799-99998520644679977986023355777776641388632 Q gi|254780624|r 20 EVPEEEKQNMVNHVFSRVSHRYDVM-NDLMSLGLHRFW-KEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQ 97 (265) Q Consensus 20 ~v~~~~k~~~v~~~F~~iA~~YD~~-N~~~S~G~~r~W-r~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~ 97 (265) T Consensus 77 e~p~~pP~aYVe~LFD~~Ae~Fd~~LVd--kL~Y~vP~~l~emI~~~~~g~--F~~~lDLGCGTGL~G~~lR~~a---~~ 149 (287) T COG4976 77 ETPEKPPSAYVETLFDQYAERFDHILVD--KLGYSVPELLAEMIGKADLGP--FRRMLDLGCGTGLTGEALRDMA---DR 149 (287) T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHH--HHCCCCHHHHHHHHHHCCCCC--CCEEEECCCCCCCCCHHHHHHH---HH T ss_conf 8887880679999999999999999998--735761899999997515776--2023442667676627678888---65 Q ss_pred EEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCC-C-CCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEE Q ss_conf 7872133222211110000011222222222223334-5-7554467403664201321344320121000485211776 Q gi|254780624|r 98 IVVADINNEMLSVGRDRAFKENLQDCITFIEANAETL-P-FEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLV 175 (265) Q Consensus 98 v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~l-p-~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i 175 (265) T Consensus 150 ltGvDiS~nMl~kA~eK----g~YD--~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfa- 222 (287) T COG4976 150 LTGVDISENMLAKAHEK----GLYD--TLYVAEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFA- 222 (287) T ss_pred CCCCCHHHHHHHHHHHC----CCHH--HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEE- T ss_conf 12776269999998862----4157--8889899987552267764301245678864003468999998558986489- Q ss_pred EECCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCC-------- Q ss_conf 305544551011234565311133210254288768657899999689989999999975995379998556-------- Q gi|254780624|r 176 LEFSEVQGPVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNYTN-------- 247 (265) Q Consensus 176 ~df~~p~~~~~~~~~~~y~~~iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~~~~-------- 247 (265) T Consensus 223 --FSvE~l~~~---------------~~f~l~ps~RyA---------H~~~YVr~~l~~~Gl~~i~~~~ttiR~d~g~pv 276 (287) T COG4976 223 --FSVETLPDD---------------GGFVLGPSQRYA---------HSESYVRALLAASGLEVIAIEDTTIRRDAGEPV 276 (287) T ss_pred --EEECCCCCC---------------CCEECCHHHHHC---------CCHHHHHHHHHHCCCEEEEEECCCCHHHCCCCC T ss_conf --872316777---------------873216465322---------522899999974596278742430033059987 Q ss_pred -CEEEEEEEEEEC Q ss_conf -649999998116 Q gi|254780624|r 248 -GVVALHSGWKCE 259 (265) Q Consensus 248 -Gi~~i~~g~Kp~ 259 (265) T Consensus 277 ~G~--L~iark~~ 287 (287) T COG4976 277 PGI--LVIARKKA 287 (287) T ss_pred CCC--EEEEECCC T ss_conf 871--69974379 |
|
| >pfam08003 Methyltransf_9 Protein of unknown function (DUF1698) | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.6e-14 Score=109.39 Aligned_cols=170 Identities=18% Similarity=0.252 Sum_probs=110.7 Q ss_pred CHHHHH-----HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC--CCHHCCCCCCCC Q ss_conf 017999-----9998520644679977986023355777776641388632787213322221111--000001122222 Q gi|254780624|r 52 LHRFWK-----EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGR--DRAFKENLQDCI 124 (265) Q Consensus 52 ~~r~Wr-----~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~--~r~~~~~~~~~i 124 (265) T Consensus 94 IDtEWrSd~KW~Rl~~~i~~L~g--k~VlDVGcgNGYy~~RMlg~ga--~~viGiDPs~lf~~QF~ai~~~~--~~~~~~ 167 (315) T pfam08003 94 IDTEWRSDWKWDRVLPHLSPLKG--RTILDVGCGNGYHMWRMLGEGA--ALVVGIDPSELFLCQFEAVRKLL--GNDQRA 167 (315) T ss_pred CCCCCCCCCCHHHHHHHHCCCCC--CEEEECCCCCHHHHHHHHHCCC--CEEEEECCHHHHHHHHHHHHHHC--CCCCCE T ss_conf 44210042229988734224268--9887517786499998622399--87998898199999999999970--898756 Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHHHH Q ss_conf 22222233345755446740366420132134432012100048521177630554455101123456531113321025 Q gi|254780624|r 125 TFIEANAETLPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLGRF 204 (265) Q Consensus 125 ~~~~~da~~lp~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~iiP~~g~~ 204 (265) T Consensus 168 ~~lPlg~E~lp~~-~~FDtVFsMGVLYHrrsP~~hL~~Lk~~L~~gGeLvLETlvi~gd~~---------~~L~P~-~r- 235 (315) T pfam08003 168 HLLPLGIEQLPAL-EAFDTVFSMGVLYHRRSPLDHLLQLKDQLVKGGELVLETLVIEGDEN---------TVLVPG-DR- 235 (315) T ss_pred EEECCCHHHCCCC-CCCCEEEEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEEEECCCCC---------EEECCC-CC- T ss_conf 8853676548663-42155776544432689899999999852879789999877659887---------256788-54- Q ss_pred HCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCC Q ss_conf 4288768657899999689989999999975995379998556 Q gi|254780624|r 205 IAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNYTN 247 (265) Q Consensus 205 ~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~~~~ 247 (265) T Consensus 236 YA~M~NV~--------fiPS~~~L~~Wl~r~GF~~i~~vd~~~ 270 (315) T pfam08003 236 YAQMRNVY--------FIPSAAALKNWLEKCGFVDVRIVDVSV 270 (315) T ss_pred CCCCCCCE--------ECCCHHHHHHHHHHCCCCEEEEEECCC T ss_conf 14798754--------547889999999985993278887787 |
This family contains many hypothetical proteins. It also includes two putative methyltransferase proteins. |
| >TIGR00740 TIGR00740 methyltransferase, putative; InterPro: IPR005271 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.2e-14 Score=112.84 Aligned_cols=202 Identities=17% Similarity=0.212 Sum_probs=130.2 Q ss_pred HHHHHHHH----HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCC-CCEEEEECCC Q ss_conf 99999876----342115766761480179999998520644679977986023355777776641388-6327872133 Q gi|254780624|r 30 VNHVFSRV----SHRYDVMNDLMSLGLHRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDN-RSQIVVADIN 104 (265) Q Consensus 30 v~~~F~~i----A~~YD~~N~~~S~G~~r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~-~~~v~giD~s 104 (265) T Consensus 21 VA~VF~DM~~RSvP~Y~~---~~~~GayfI-~~nL~E~~~~kslp~~~vYDLGCS~G~~~l~~~R~I~~~~~~~igIDNS 96 (247) T TIGR00740 21 VAEVFPDMIQRSVPGYSN---IINLGAYFI-GMNLAERFVPKSLPKPLVYDLGCSTGAATLSLRRNIQQDNIKIIGIDNS 96 (247) T ss_pred HHHHCHHHHHCCCCHHHH---HHHHHHHHH-HHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHCCCCCCEEEEEECCC T ss_conf 322132566226832789---999889999-8777765433116887412233432357766530468785379884188 Q ss_pred CCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCH--HHHHHHCCCCHHCCCCCEEEEEE-CCCC Q ss_conf 22221111000001122222222222333457554467403664201321--34432012100048521177630-5544 Q gi|254780624|r 105 NEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFGIRNMP--HITLVLQEIYRILKCGGRLLVLE-FSEV 181 (265) Q Consensus 105 ~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~~~~--d~~~~l~e~~RvLKpGG~~~i~d-f~~p 181 (265) T Consensus 97 ~pM~~~~~~~~~~y~~~~Pv~~~~~D~~~v~~~~AS~--~~L~F~LQFl~P~~R~~LL~KIY~~L~~nGvL~lsEK~~~E 174 (247) T TIGR00740 97 MPMLERCREHIKAYKNAIPVEVLCMDIREVEIKNASM--VVLNFTLQFLRPEEREALLKKIYNGLNPNGVLVLSEKFMFE 174 (247) T ss_pred HHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHH--HHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHH T ss_conf 8899999999987424788232010245666655468--87887760478234799999987410778668863201366 Q ss_pred CCCHHHHHHHHHHHC--HHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEE Q ss_conf 551011234565311--133210254288768657899999689989999999975995379 Q gi|254780624|r 182 QGPVFKKIYDMWSFK--VIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVS 241 (265) Q Consensus 182 ~~~~~~~~~~~y~~~--iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~ 241 (265) T Consensus 175 D~~~~~~li~l~~~fK~~~GYS~~Ei~~KR~~----LENV~~~~S~~~~~a~L~~vGF~~vE 232 (247) T TIGR00740 175 DRKLDKLLIELHHLFKRANGYSELEISQKREA----LENVLVTDSLETHKARLENVGFKHVE 232 (247) T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH----HHHCCCCCHHHHHHHHHHHCCHHHHH T ss_conf 78999999999999874158723468887888----76202300146645667535646888 |
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order . Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI ), shared by other AdoMet-Mtases , is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments , although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases , , , . The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences . The proteins of this family are restricted to the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 0dentity. It is reasonable to predict equivalent function within this subfamily. . |
| >KOG2361 consensus | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.4e-13 Score=107.63 Aligned_cols=188 Identities=22% Similarity=0.374 Sum_probs=121.1 Q ss_pred HHHHHHHH-HHH-----HHHHHCCCHHHHHHHHHHHHCCCCCCC-CEEEECCHHHHHHHHHHHHHCCC-CCEEEEECCCC Q ss_conf 98763421-157-----667614801799999985206446799-77986023355777776641388-63278721332 Q gi|254780624|r 34 FSRVSHRY-DVM-----NDLMSLGLHRFWKEAMVTNLNPRKSKD-YRVLDVAGGTGDVAFRIAEASDN-RSQIVVADINN 105 (265) Q Consensus 34 F~~iA~~Y-D~~-----N~~~S~G~~r~Wr~~~i~~l~~~~~~~-~~iLDiGcGTG~~~~~l~~~~~~-~~~v~giD~s~ 105 (265) T Consensus 31 y~~~~~k~wD~fy~~~~~rF---fkdR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp 107 (264) T KOG2361 31 YEREASKYWDTFYKIHENRF---FKDRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSP 107 (264) T ss_pred HHCCHHHHHHHHHHHCCCCC---CCHHHHHHHHHHHHHCCCCCCHHHHEEECCCCCCCCCHHHHCCCCCCEEEEECCCCH T ss_conf 63364666456665324545---311677877567750755557345112224777512244424899873899748986 Q ss_pred CCCCCCCCCHHCCCCCCCCCCCCCCCC----CCCCCCCCCCCCEEEEEECCCH--HHHHHHCCCCHHCCCCCEEEEEECC Q ss_conf 222111100000112222222222233----3457554467403664201321--3443201210004852117763055 Q gi|254780624|r 106 EMLSVGRDRAFKENLQDCITFIEANAE----TLPFEANSFDACTLAFGIRNMP--HITLVLQEIYRILKCGGRLLVLEFS 179 (265) Q Consensus 106 ~Ml~~a~~r~~~~~~~~~i~~~~~da~----~lp~~d~sfD~V~~sf~l~~~~--d~~~~l~e~~RvLKpGG~~~i~df~ 179 (265) T Consensus 108 ~Ai~~vk~~~~~~--e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg 185 (264) T KOG2361 108 RAIELVKKSSGYD--ESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYG 185 (264) T ss_pred HHHHHHHHCCCCC--HHHHCCCCEECCCHHCCCCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEECC T ss_conf 8999987363326--45501200016560103788867633478999875148477899999999974888679984145 Q ss_pred CCCCCHHHHHHHHHHHCHHHHHH-HHHCCCHH-HHHHHHHHHHHCCCHHHHHHHHHHCCCCEEE Q ss_conf 44551011234565311133210-25428876-8657899999689989999999975995379 Q gi|254780624|r 180 EVQGPVFKKIYDMWSFKVIPQLG-RFIAGDEE-PYQYLIESIRRFPNQQDFAAVISAAGFSNVS 241 (265) Q Consensus 180 ~p~~~~~~~~~~~y~~~iiP~~g-~~~~~~~~-~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~ 241 (265) T Consensus 186 ~~DlaqlRF~~----~~~i--~~nfYVRgDGT~~Y---------fF~~eeL~~~f~~agf~~~~ 234 (264) T KOG2361 186 RYDLAQLRFKK----GQCI--SENFYVRGDGTRAY---------FFTEEELDELFTKAGFEEVQ 234 (264) T ss_pred CCHHHHHHCCC----CCEE--ECCEEECCCCCEEE---------ECCHHHHHHHHHHCCCCHHC T ss_conf 43478875157----7432--01458816996652---------23688999998751532100 |
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.31 E-value=3e-11 Score=92.66 Aligned_cols=154 Identities=19% Similarity=0.271 Sum_probs=103.5 Q ss_pred HHHC--CCHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCC Q ss_conf 7614--80179999998520644679977986023355777776641388632787213322221111000001122222 Q gi|254780624|r 47 LMSL--GLHRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCI 124 (265) Q Consensus 47 ~~S~--G~~r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i 124 (265) T Consensus 138 gmAFGTG~H~T-T~lcl~~l~~~~~~~~~vLDvG~GSGILaIaA~klG-a-~~v~a~DiD~~Av~~a~eN~~lN~v~~~~ 214 (298) T PRK00517 138 GLAFGTGTHPT-TRLCLEWLEKLVLPGKTVLDVGCGSGILAIAAAKLG-A-KPVLAIDIDPQAVEAARENAELNGVDDRL 214 (298) T ss_pred CCCCCCCCCHH-HHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCC-C-CEEEEEECCHHHHHHHHHHHHHCCCCCCE T ss_conf 43456777747-999999998435468868871577069999999749-9-84999989899999999999986998426 Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEECCCHH-HHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHHH Q ss_conf 2222223334575544674036642013213-443201210004852117763055445510112345653111332102 Q gi|254780624|r 125 TFIEANAETLPFEANSFDACTLAFGIRNMPH-ITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLGR 203 (265) Q Consensus 125 ~~~~~da~~lp~~d~sfD~V~~sf~l~~~~d-~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~iiP~~g~ 203 (265) T Consensus 215 ~~~~~~~~~---~~~~~DlvvANI-l---a~vl~~l~~~~~~~l~~~G~lilS-----------GI-------------- 262 (298) T PRK00517 215 ELYLPEDQP---LEGKADVIVANI-L---ANPLIELAPDLAALVKPGGRLILS-----------GI-------------- 262 (298) T ss_pred EEECCCCCC---CCCCCCEEEEEC-C---HHHHHHHHHHHHHHHCCCCEEEEE-----------CC-------------- T ss_conf 896166434---467646899731-5---899999999999973899799992-----------78-------------- Q ss_pred HHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCEEEEE Q ss_conf 54288768657899999689989999999975995379998556649999 Q gi|254780624|r 204 FIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNYTNGVVALH 253 (265) Q Consensus 204 ~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~~~~Gi~~i~ 253 (265) T Consensus 263 -l~--~--------------~~~~v~~~~~~~g~~~~~~~-~~~~W~~l~ 294 (298) T PRK00517 263 -LA--E--------------QADEVLEAYEDAGFTLDEVA-EREEWVRIV 294 (298) T ss_pred -CH--H--------------HHHHHHHHHHHCCCEEEEEE-EECCEEEEE T ss_conf -48--8--------------99999999998799897886-039889999 |
|
| >KOG1975 consensus | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.1e-12 Score=100.06 Aligned_cols=175 Identities=19% Similarity=0.306 Sum_probs=110.1 Q ss_pred HHHH-HHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCC-----CCCCCC Q ss_conf 9999-9985206446799779860233557777766413886327872133222211110000011222-----222222 Q gi|254780624|r 55 FWKE-AMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQD-----CITFIE 128 (265) Q Consensus 55 ~Wr~-~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~-----~i~~~~ 128 (265) T Consensus 104 NwIKs~LI~~y~---~~~~~~~~LgCGKGGDLlKw~kAg--I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~ 178 (389) T KOG1975 104 NWIKSVLINLYT---KRGDDVLDLGCGKGGDLLKWDKAG--IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIA 178 (389) T ss_pred HHHHHHHHHHHH---CCCCCCCEECCCCCCCHHHHHHHC--CCCEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEE T ss_conf 789999999986---122300000567762076765514--563576534340099999999999866641365169997 Q ss_pred CCCC------CCCCCCCCCCCCEEEEEECCC-H---HHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHH-H----H Q ss_conf 2233------345755446740366420132-1---3443201210004852117763055445510112345-6----5 Q gi|254780624|r 129 ANAE------TLPFEANSFDACTLAFGIRNM-P---HITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYD-M----W 193 (265) Q Consensus 129 ~da~------~lp~~d~sfD~V~~sf~l~~~-~---d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~-~----y 193 (265) T Consensus 179 ~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FI---gTiPdsd~Ii~rlr~~e~~~~ 255 (389) T KOG1975 179 ADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFI---GTIPDSDVIIKRLRAGEVERF 255 (389) T ss_pred ECCCHHHHHHHCCCCCCCCCEEEEEEEEEEEECCHHHHHHHHHHHHHHCCCCCEEE---EECCCHHHHHHHHHHCCCHHH T ss_conf 14416689874257898855565545675431338889999998996358885799---846968999999985111110 Q ss_pred HHCH--------------HHHHHHHHCCCHHHHH-HHHHHHHHCC----CHHHHHHHHHHCCCCEEEEEEC Q ss_conf 3111--------------3321025428876865-7899999689----9899999999759953799985 Q gi|254780624|r 194 SFKV--------------IPQLGRFIAGDEEPYQ-YLIESIRRFP----NQQDFAAVISAAGFSNVSFTNY 245 (265) Q Consensus 194 ~~~i--------------iP~~g~~~~~~~~~Y~-yL~~Si~~f~----~~~el~~~l~~aGF~~v~~~~~ 245 (265) T Consensus 256 gNdiykv~y~~~~~k~~~~p~fG~-------kY~F~LedaVd-cPEylV~F~~l~~lae~y~LeLv~~k~F 318 (389) T KOG1975 256 GNDIYKVTYEIEFQKEFDVPPFGA-------KYRFHLEDAVD-CPEYLVPFPTLVSLAEEYGLELVFVKPF 318 (389) T ss_pred CCEEEEEEEEEECCCCCCCCCCCC-------EEEEECCCCCC-CCCEEEEHHHHHHHHHHCCCEEEEECCH T ss_conf 460146750032133468897653-------38997044557-7510401599999998629589884268 |
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.3e-11 Score=94.89 Aligned_cols=160 Identities=24% Similarity=0.333 Sum_probs=107.7 Q ss_pred HHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCC-CCCCCCCCCCCCC Q ss_conf 999999852064467997798602335577777664138863278721332222111100000112-2222222222333 Q gi|254780624|r 55 FWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENL-QDCITFIEANAET 133 (265) Q Consensus 55 ~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~-~~~i~~~~~da~~ 133 (265) T Consensus 119 P~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA--~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e 196 (287) T COG2521 119 PLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERGA--IHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYE 196 (287) T ss_pred CHHHHHHHHHEECCCCCCEEEEECCCCCHHHHHHHHCCC--CEEEEEEECCCEEEEECCCCCCCCCCCCCCEEECCCHHH T ss_conf 078887566244436687844324671389999987587--489999608772774135889842020031786165999 Q ss_pred C--CCCCCCCCCCEE---EEEECCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHHHHHCCC Q ss_conf 4--575544674036---64201321344320121000485211776305544551011234565311133210254288 Q gi|254780624|r 134 L--PFEANSFDACTL---AFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLGRFIAGD 208 (265) Q Consensus 134 l--p~~d~sfD~V~~---sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~iiP~~g~~~~~~ 208 (265) T Consensus 197 ~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHY-vG~Pg~------------------------- 250 (287) T COG2521 197 VVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHY-VGNPGK------------------------- 250 (287) T ss_pred HHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEE-ECCCCC------------------------- T ss_conf 974188653016860797331023576899999999970769807997-279874------------------------- Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCEEE Q ss_conf 7686578999996899899999999759953799985566499 Q gi|254780624|r 209 EEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNYTNGVVA 251 (265) Q Consensus 209 ~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~~~~Gi~~ 251 (265) T Consensus 251 --ryrG~-------d~~~gVa~RLr~vGF~~v~~~~~~~gv~A 284 (287) T COG2521 251 --RYRGL-------DLPKGVAERLRRVGFEVVKKVREALGVVA 284 (287) T ss_pred --CCCCC-------CHHHHHHHHHHHCCCEEEEEEHHCCCEEE T ss_conf --02467-------71478999998617344432321062588 |
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.7e-11 Score=90.39 Aligned_cols=152 Identities=24% Similarity=0.323 Sum_probs=99.5 Q ss_pred CCHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCC Q ss_conf 80179999998520644679977986023355777776641388632787213322221111000001122222222222 Q gi|254780624|r 51 GLHRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEAN 130 (265) Q Consensus 51 G~~r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~d 130 (265) T Consensus 144 G~HpT-T~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA--~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~ 220 (300) T COG2264 144 GTHPT-TSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGA--KKVVGVDIDPQAVEAARENARLNGVELLVQAKGFL 220 (300) T ss_pred CCCHH-HHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCC--CEEEEECCCHHHHHHHHHHHHHCCCCHHHHCCCCC T ss_conf 87801-7999999998605898799826781599999998198--66899718889999999999976996022003456 Q ss_pred CCCCCCCCCCCCCCEEEEEECCCHH-HHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCH Q ss_conf 3334575544674036642013213-443201210004852117763055445510112345653111332102542887 Q gi|254780624|r 131 AETLPFEANSFDACTLAFGIRNMPH-ITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLGRFIAGDE 209 (265) Q Consensus 131 a~~lp~~d~sfD~V~~sf~l~~~~d-~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~iiP~~g~~~~~~~ 209 (265) T Consensus 221 ~~~~~~-~~~~DvIVANI----LA~vl~~La~~~~~~lkpgg~lIlSG-----------I---------------l~-~- 267 (300) T COG2264 221 LLEVPE-NGPFDVIVANI----LAEVLVELAPDIKRLLKPGGRLILSG-----------I---------------LE-D- 267 (300) T ss_pred CHHHCC-CCCCCEEEEHH----HHHHHHHHHHHHHHHCCCCCEEEEEE-----------E---------------CH-H- T ss_conf 300013-68656898605----27899999999998708893699986-----------2---------------07-5- Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCEEEEE Q ss_conf 68657899999689989999999975995379998556649999 Q gi|254780624|r 210 EPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNYTNGVVALH 253 (265) Q Consensus 210 ~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~~~~Gi~~i~ 253 (265) T Consensus 268 --------------q~~~V~~a~~~~gf~v~~~~~~-~eW~~i~ 296 (300) T COG2264 268 --------------QAESVAEAYEQAGFEVVEVLER-EEWVAIV 296 (300) T ss_pred --------------HHHHHHHHHHHCCCEEEEEEEC-CCEEEEE T ss_conf --------------8999999998589768689700-8779999 |
|
| >TIGR00452 TIGR00452 methyltransferase, putative; InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.8e-11 Score=89.98 Aligned_cols=172 Identities=19% Similarity=0.269 Sum_probs=112.8 Q ss_pred CHHHHH-----HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCC Q ss_conf 017999-----999852064467997798602335577777664138863278721332222111100000112222222 Q gi|254780624|r 52 LHRFWK-----EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITF 126 (265) Q Consensus 52 ~~r~Wr-----~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~ 126 (265) T Consensus 100 iD~EW~S~~KWDR~l~~~~pL~~--~~i~DVGC~~GY~~~~M~~~Gak--~~VG~DP~~L~~~QFE~~~~ll~~~~~~~l 175 (316) T TIGR00452 100 IDSEWRSDIKWDRVLPHLSPLKG--RTILDVGCGSGYHLWRMLGEGAK--LLVGIDPTELFLCQFEAVRKLLDNDKRAIL 175 (316) T ss_pred ECCCCCCCCCHHHHCCCCCCCCC--CEEEEECCCCHHHHHHHHHCCCC--EEEECCHHHHHHHHHHHHHHHHCCCCEEEE T ss_conf 50430666535543124665457--77898336870688977620782--787436578999999999987242355754 Q ss_pred CCCCCCCCC-CCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHHHHH Q ss_conf 222233345-7554467403664201321344320121000485211776305544551011234565311133210254 Q gi|254780624|r 127 IEANAETLP-FEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLGRFI 205 (265) Q Consensus 127 ~~~da~~lp-~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~iiP~~g~~~ 205 (265) T Consensus 176 ~~LGiE~l~~~~pnAFD~vFs~GVLYHRkSPLe~L~~L~~~L~~~GELVL~TL-viD~d~-----~---~~LvP~--~~Y 244 (316) T TIGR00452 176 LPLGIEQLQELKPNAFDTVFSLGVLYHRKSPLEHLKQLKDQLVKKGELVLETL-VIDGDL-----N---TVLVPK--DRY 244 (316) T ss_pred ECCCHHHHHHCCCCCCEEEEECCHHHCCCCCHHHHHHHHHHHHHCCCEEEEEE-EECCCC-----C---EEECCC--CCC T ss_conf 03670222320764120312202021155708999999999875793586534-660776-----7---586475--444 Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECC Q ss_conf 28876865789999968998999999997599537999855 Q gi|254780624|r 206 AGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNYT 246 (265) Q Consensus 206 ~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~~~ 246 (265) T Consensus 245 AkMkNVY--FI------PSv~aL~~Wl~kvGF~~~~i~~V~ 277 (316) T TIGR00452 245 AKMKNVY--FI------PSVSALKNWLEKVGFENVRILDVL 277 (316) T ss_pred CCEEEEE--EH------HHHHHHHHHHHHCCCCEEEEEEEE T ss_conf 2200014--20------238999888874495314787510 |
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order . Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI ), shared by other AdoMet-Mtases , is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments , although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases , , , . The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences . This is a set of proteobacterial proteins, which have homology in their central region to a large number of methyltransferases active on a variety of substrates. . |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU; InterPro: IPR014088 Members of this protein family include S-adenosylmethionine-dependent C-20 methyltransferase (BchU), part of the pathway of bacteriochlorophyll c production in photosynthetic green sulphur bacteria | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.7e-10 Score=84.95 Aligned_cols=169 Identities=22% Similarity=0.396 Sum_probs=118.0 Q ss_pred CHHHHHHHHHHHHC--CCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCC Q ss_conf 01799999985206--4467997798602335577777664138863278721332222111100000112222222222 Q gi|254780624|r 52 LHRFWKEAMVTNLN--PRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEA 129 (265) Q Consensus 52 ~~r~Wr~~~i~~l~--~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~ 129 (265) T Consensus 129 ~HRSN~~l~~~LL~~~A~L~~V~~lIDVGGGIGDI~AAl~~~FP-~L~~T~~NL-P~A~DLV~EN~A~KG~ADR~~~~A~ 206 (306) T TIGR02716 129 LHRSNIKLAIELLLKRAKLDDVKKLIDVGGGIGDIAAALLKAFP-ELDVTLLNL-PSALDLVRENVAEKGLADRIRGVAV 206 (306) T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHCC-CCCEEEECC-CCHHHHHHHHHHHCCCCCCCCCEEE T ss_conf 76768999999999875163132543338887789999997377-523231205-4055677665541451004663156 Q ss_pred CCCCCCCCCCCCCCCEEEEEECCCHHH---HHHHCCCCHHCCCCCEEEEEEC--CCCCCCHHHHHHHHHHHCHHHHHHHH Q ss_conf 233345755446740366420132134---4320121000485211776305--54455101123456531113321025 Q gi|254780624|r 130 NAETLPFEANSFDACTLAFGIRNMPHI---TLVLQEIYRILKCGGRLLVLEF--SEVQGPVFKKIYDMWSFKVIPQLGRF 204 (265) Q Consensus 130 da~~lp~~d~sfD~V~~sf~l~~~~d~---~~~l~e~~RvLKpGG~~~i~df--~~p~~~~~~~~~~~y~~~iiP~~g~~ 204 (265) T Consensus 207 D~Y~E~YP~~--DAVLF~RILY~-~N~Ql~T~l~~KAyDAl~SGGR~LILDMVI~DP~~PNyDYL----~HY~~-~~GM- 277 (306) T TIGR02716 207 DIYKESYPEA--DAVLFSRILYS-ANEQLSTILLKKAYDALRSGGRLLILDMVIDDPENPNYDYL----SHYLL-AIGM- 277 (306) T ss_pred EECCCCCCCC--HHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCHHHH----HHHHH-HCCC- T ss_conf 5033875771--16567788764-46789999999887522578807865434318567771468----99998-7166- Q ss_pred HCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEE Q ss_conf 42887686578999996899899999999759953799 Q gi|254780624|r 205 IAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSF 242 (265) Q Consensus 205 ~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~ 242 (265) T Consensus 278 -----------~FSVL~FK~~A~Y~~~L~~~Gy~DVTl 304 (306) T TIGR02716 278 -----------GFSVLEFKDQAVYKDLLRSLGYKDVTL 304 (306) T ss_pred -----------CCHHHHHHHCCCCHHHHHHCCCCEEEC T ss_conf -----------610121100230079998559720101 |
The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produce bacteriochlorophyll d.. |
| >pfam05891 Hydroxy-O-Methy Putative hydroxyindole-O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.2e-10 Score=83.77 Aligned_cols=185 Identities=18% Similarity=0.231 Sum_probs=117.2 Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHC-CCHHHHHHHHHHHH----CCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEE Q ss_conf 999999987634211576-67614-80179999998520----6446799779860233557777766413886327872 Q gi|254780624|r 28 NMVNHVFSRVSHRYDVMN-DLMSL-GLHRFWKEAMVTNL----NPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVA 101 (265) Q Consensus 28 ~~v~~~F~~iA~~YD~~N-~~~S~-G~~r~Wr~~~i~~l----~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~gi 101 (265) T Consensus 7 ~~a~~YW~~v~atvdGmLGG~~~vs~~Di~gS~~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~lL~~~f--~~VDlV 84 (217) T pfam05891 7 SKAIAYWEGVSATVDGMLGGYGHVSDIDINGSRNFLRRLLRERLPGKRRHLVALDCGAGIGRVTKNLLLPLF--SKVDLV 84 (217) T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCEECHHHHHHHC--CEEEEE T ss_conf 899898758999777521798877878898899999998644388877632665426763611266788754--813575 Q ss_pred CCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHH--HHHHHCCCCHHCCCCCEEEEEECC Q ss_conf 133222211110000011222222222223334575544674036642013213--443201210004852117763055 Q gi|254780624|r 102 DINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFGIRNMPH--ITLVLQEIYRILKCGGRLLVLEFS 179 (265) Q Consensus 102 D~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~~~~d--~~~~l~e~~RvLKpGG~~~i~df~ 179 (265) T Consensus 85 Epv~~Fl~~ak~~l~~~~-~~~~~~~~~gLQdf~P~~~~YD~IW~QW~~ghLtD~dlv~Fl~RCk~~L~~~G~IvvKEN~ 163 (217) T pfam05891 85 EPVEDFLAKAKEYLAEEK-KKVGNFFCVGLQDFTPEEGRYDLIWIQWCIGHLTDEDLVAFLKRCKSGLKPNGIIVIKENV 163 (217) T ss_pred CCCHHHHHHHHHHHHHCC-CCCCEEEECCCCCCCCCCCEEEEEEEHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEEECC T ss_conf 444999999999874037-9765389736101689998176998058452188899999999999847898649984223 Q ss_pred CCCCCHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEE Q ss_conf 4455101123456531113321025428876865789999968998999999997599537999 Q gi|254780624|r 180 EVQGPVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFT 243 (265) Q Consensus 180 ~p~~~~~~~~~~~y~~~iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~ 243 (265) T Consensus 164 ~~~~----~~~D-----------------~~-----DsSvTR--s~~~~~~lF~~AGl~~v~~~ 199 (217) T pfam05891 164 TQEG----VIFD-----------------DV-----DSSVTR--GEASFRKIFKKAGLKLVAEE 199 (217) T ss_pred CCCC----CEEC-----------------CC-----CCCCCC--CHHHHHHHHHHCCCEEEEHH T ss_conf 6777----7415-----------------65-----454317--79999999998598566043 |
This family of proteins is a putative hydroxyindole-O-methyltransferase and by homology, is expected to catalyse the conversion of N-acetyl serotonin to melatonin. The protein is expressed in the tail neuron PVT and in uterine cells [worm-base]. |
| >KOG3178 consensus | Back alignment and domain information |
|---|
Probab=98.99 E-value=5e-09 Score=78.32 Aligned_cols=169 Identities=17% Similarity=0.227 Sum_probs=109.8 Q ss_pred HHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCC Q ss_conf 57667614801799999985206446799779860233557777766413886327872133222211110000011222 Q gi|254780624|r 43 VMNDLMSLGLHRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQD 122 (265) Q Consensus 43 ~~N~~~S~G~~r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~ 122 (265) T Consensus 152 ~~~~sm~~-l~~~~~~~il~~~~Gf~-~v~~avDvGgGiG~v~k~ll~~fp---~ik~infdlp~v~~~a~~~~-----~ 221 (342) T KOG3178 152 DFNGSMSF-LSTLVMKKILEVYTGFK-GVNVAVDVGGGIGRVLKNLLSKYP---HIKGINFDLPFVLAAAPYLA-----P 221 (342) T ss_pred HHHHHHHH-HHHHHHHHHHHHHCCCC-CCCEEEECCCCHHHHHHHHHHHCC---CCCEEECCHHHHHHHHHHHC-----C T ss_conf 99999888-87888886420102655-676688758747699999997588---77255147899985223206-----7 Q ss_pred CCCCCCCCCCC-CCCCCCCCCCCEEEEEECCCHH--HHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHH-------HHHH Q ss_conf 22222222333-4575544674036642013213--443201210004852117763055445510112-------3456 Q gi|254780624|r 123 CITFIEANAET-LPFEANSFDACTLAFGIRNMPH--ITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKK-------IYDM 192 (265) Q Consensus 123 ~i~~~~~da~~-lp~~d~sfD~V~~sf~l~~~~d--~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~-------~~~~ 192 (265) T Consensus 222 gV~~v~gdmfq~~P~~----daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~ 297 (342) T KOG3178 222 GVEHVAGDMFQDTPKG----DAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDL 297 (342) T ss_pred CCCEECCCCCCCCCCC----CEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCEEEHHHH T ss_conf 8651236453458876----759987000568768899999999985899888999835688777766643210104678 Q ss_pred HHHCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEE Q ss_conf 5311133210254288768657899999689989999999975995379998 Q gi|254780624|r 193 WSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTN 244 (265) Q Consensus 193 y~~~iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~ 244 (265) T Consensus 298 lm~~-------~~~~Gke------------rt~~e~q~l~~~~gF~~~~~~~ 330 (342) T KOG3178 298 LMLT-------QTSGGKE------------RTLKEFQALLPEEGFPVCMVAL 330 (342) T ss_pred HHHH-------HHCCCEE------------CCHHHHHHCCHHHCCCEEEEEE T ss_conf 9998-------7525601------------1499997114664683468973 |
|
| >KOG3191 consensus | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00013 Score=49.85 Aligned_cols=197 Identities=16% Similarity=0.204 Sum_probs=98.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCC Q ss_conf 99999999876342115766761480179999998520644679977986023355777776641388632787213322 Q gi|254780624|r 27 QNMVNHVFSRVSHRYDVMNDLMSLGLHRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNE 106 (265) Q Consensus 27 ~~~v~~~F~~iA~~YD~~N~~~S~G~~r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~ 106 (265) T Consensus 8 ~~~~~~~f~d---VYEPaEDTFlL-lDaL--ekd~~eL~~~~--~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~ 79 (209) T KOG3191 8 IHLIRLDFSD---VYEPAEDTFLL-LDAL--EKDAAELKGHN--PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPE 79 (209) T ss_pred HHHHHHHHHH---CCCCCCHHHHH-HHHH--HHHHHHHHHCC--CEEEEEECCCCCHHHHHHHHHCCCCCEEEEECCCHH T ss_conf 5565566651---34764105389-9999--99999986148--605899348846599999974177716999549989 Q ss_pred CCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHH--HCCCCHHCCCCCEEEEEECCCCCCC Q ss_conf 22111100000112222222222233345755446740366420132134432--0121000485211776305544551 Q gi|254780624|r 107 MLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFGIRNMPHITLV--LQEIYRILKCGGRLLVLEFSEVQGP 184 (265) Q Consensus 107 Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~~~~d~~~~--l~e~~RvLKpGG~~~i~df~~p~~~ 184 (265) T Consensus 80 A~~~Tl~TA~~n~--~~~~~V~tdl~~-~l~~~~VDvLv--fNPPYVpt~~~~i~~~~i~~a~-aGG~~G---------- 143 (209) T KOG3191 80 ALEATLETARCNR--VHIDVVRTDLLS-GLRNESVDVLV--FNPPYVPTSDEEIGDEGIASAW-AGGKDG---------- 143 (209) T ss_pred HHHHHHHHHHHCC--CCCCEEEHHHHH-HHCCCCCCEEE--ECCCCCCCCCCCCHHHHHHHHH-HCCCCH---------- T ss_conf 9988799998557--752056525776-63327730899--7899676985442067788887-457541---------- Q ss_pred HHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEE-EEECCC-CEEEEEEEEE Q ss_conf 011234565311133210254288768657899999689989999999975995379-998556-6499999981 Q gi|254780624|r 185 VFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVS-FTNYTN-GVVALHSGWK 257 (265) Q Consensus 185 ~~~~~~~~y~~~iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~-~~~~~~-Gi~~i~~g~K 257 (265) T Consensus 144 ------r~v~d~ll~~v~~iLSp~Gv~--Ylv~~~~--N~p~ei~k~l~~~g~~~~~~~~Rk~~~E~l~ilkf~r 208 (209) T KOG3191 144 ------REVTDRLLPQVPDILSPRGVF--YLVALRA--NKPKEILKILEKKGYGVRIAMQRKAGGETLSILKFTR 208 (209) T ss_pred ------HHHHHHHHHHHHHHCCCCCEE--EEEEHHH--CCHHHHHHHHHHCCCCEEEEEEEECCCCEEEEEEEEE T ss_conf ------789998876404442867437--7630130--5979999987433653068888744774278999985 |
|
| >pfam05971 Methyltransf_10 Protein of unknown function (DUF890) | Back alignment and domain information |
|---|
Probab=97.88 E-value=1.5e-05 Score=55.88 Aligned_cols=182 Identities=16% Similarity=0.200 Sum_probs=92.9 Q ss_pred HHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCC-CCCCCCCCCCCCCCC Q ss_conf 9999998520644679977986023355777776641388632787213322221111000001-122222222222333 Q gi|254780624|r 55 FWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKE-NLQDCITFIEANAET 133 (265) Q Consensus 55 ~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~-~~~~~i~~~~~da~~ 133 (265) T Consensus 50 h~l~DLL~~~~~~~~~~v~gLDIGtGAscIYPLLg~~~-y~W~fvgtDId~~sl~~A~~nv~~N~~L~~~I~l~~q~~~~ 128 (254) T pfam05971 50 HWVADLLGHQDSDIPTLRRALDIGTGANCIYPLLGVTE-YGWRFVGSEVDPQSLNSAKAIVEANPNLSDAIELRRQPQST 128 (254) T ss_pred HHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHCCCC-CCCEEEEEECCHHHHHHHHHHHHHCCCCHHCEEEEECCCCC T ss_conf 99999975427887777467773366415777540400-48637976279899999999998583323116999637811 Q ss_pred -----CCCCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCC---C----CCEEEEEECCCCCC--CHHHHHHH---HHHHC Q ss_conf -----45755446740366420132134432012100048---5----21177630554455--10112345---65311 Q gi|254780624|r 134 -----LPFEANSFDACTLAFGIRNMPHITLVLQEIYRILK---C----GGRLLVLEFSEVQG--PVFKKIYD---MWSFK 196 (265) Q Consensus 134 -----lp~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLK---p----GG~~~i~df~~p~~--~~~~~~~~---~y~~~ 196 (265) T Consensus 129 ~if~gii~~~e~fdftmCNPPF--~~S~~ea~~~~~rk~~~~~p~~~f~G~~~--El~~~GGE~~Fi~rMI~ES~~~~~~ 204 (254) T pfam05971 129 LIFNGLIGENERYDFTLCNPPF--HASLAEAKGGSSRKPGRPPPSLNFGGQIA--ELWCEGGEAAFIKKMIEESLQFAKQ 204 (254) T ss_pred CCCCCCCCCCCCEEEEECCCCC--CCCHHHHHHHHHCCCCCCCCCCCCCCCCC--EEEECCCHHHHHHHHHHHHHHHCCC T ss_conf 0223446876606663037986--67888887776446678997303567530--6674684599999999999986447 Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCE-EEEEEEE Q ss_conf 13321025428876865789999968998999999997599537999855664-9999998 Q gi|254780624|r 197 VIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNYTNGV-VALHSGW 256 (265) Q Consensus 197 iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~~~~Gi-~~i~~g~ 256 (265) T Consensus 205 v-~WfTsmvgKk--------------s~l~~l~~~L~~~~~~~~~~~em~QG~k~rw~vAW 250 (254) T pfam05971 205 V-RWFTTLVSKG--------------CNLPPLKEELRILGAPKVTVTEMAQGQKQSRFIAW 250 (254) T ss_pred C-EEECCCCCCC--------------CCHHHHHHHHHHCCCCEEEEEEEECCCEEEEEEEE T ss_conf 5-7983136662--------------14999999999769977999983279851499997 |
This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of this family is unknown. |
| >pfam04672 DUF574 Protein of unknown function (DUF574) | Back alignment and domain information |
|---|
Probab=97.76 E-value=4.6e-05 Score=52.80 Aligned_cols=165 Identities=18% Similarity=0.253 Sum_probs=103.6 Q ss_pred HHHHHHHHHHHHCCCCCCCCEEEECCHH--HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCC Q ss_conf 1799999985206446799779860233--55777776641388632787213322221111000001122222222222 Q gi|254780624|r 53 HRFWKEAMVTNLNPRKSKDYRVLDVAGG--TGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEAN 130 (265) Q Consensus 53 ~r~Wr~~~i~~l~~~~~~~~~iLDiGcG--TG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~d 130 (265) T Consensus 53 nR~Fl~RaVr~La~e~GI-rQFLDlGsGlPT~~nvHeVAq~~~P~aRVVYVD~DPvvlaHaraLL~~-~~~~~t~~v~aD 130 (268) T pfam04672 53 NRAFMHRAVRHLAEEAGI-RQFLDIGTGLPTEPNVHQVAQRVAPESRVVYVDNDPIVLTHARALLTS-TPEGATDYIHAD 130 (268) T ss_pred HHHHHHHHHHHHHHHCCC-EEEEEECCCCCCCCCCCHHHHHCCCCCEEEEECCCCHHHHHHHHHHCC-CCCCCEEEEECC T ss_conf 999999999999875495-057760569999997214667329986399988982799999999568-987746999777 Q ss_pred CCCCC--CC----CCCCCC-----CEEEEEECCCHH---HHHHHCCCCHHCCCCCEEEEEECCCCCCCH-HHHHHHHHHH Q ss_conf 33345--75----544674-----036642013213---443201210004852117763055445510-1123456531 Q gi|254780624|r 131 AETLP--FE----ANSFDA-----CTLAFGIRNMPH---ITLVLQEIYRILKCGGRLLVLEFSEVQGPV-FKKIYDMWSF 195 (265) Q Consensus 131 a~~lp--~~----d~sfD~-----V~~sf~l~~~~d---~~~~l~e~~RvLKpGG~~~i~df~~p~~~~-~~~~~~~y~~ 195 (265) T Consensus 131 lrdp~~iL~~p~~~~~lD~~rPValll~~vLh~v~D~~~p~~iv~~l~d~l~pGS~L~ish~t~d~~p~~~~~~~~~~~~ 210 (268) T pfam04672 131 VRDPEEILEHPEARRTLDFDRPVALSLVAILHFVPDDDDPYGIVRRLMDALPAGSYLVLSHGTSDLNPELVEAVADVYAK 210 (268) T ss_pred CCCHHHHHCCHHHHHHCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHC T ss_conf 77989986598788537878861345334434578610499999999972699765999843588888899999999970 Q ss_pred CHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEE Q ss_conf 1133210254288768657899999689989999999975995379 Q gi|254780624|r 196 KVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVS 241 (265) Q Consensus 196 ~iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~ 241 (265) T Consensus 211 ~~~------------p~--------~~Rs~~ei~~~f~--g~elve 234 (268) T pfam04672 211 GGN------------PL--------RLRSRAEVARFFD--GLELVE 234 (268) T ss_pred CCC------------CC--------CCCCHHHHHHHCC--CCCCCC T ss_conf 799------------86--------4059999999759--984089 |
Family of uncharacterized proteins. |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00086 Score=44.60 Aligned_cols=177 Identities=16% Similarity=0.169 Sum_probs=104.2 Q ss_pred HHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCC-CC Q ss_conf 76148017999999852064467997798602335577777664138863278721332222111100000112222-22 Q gi|254780624|r 47 LMSLGLHRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDC-IT 125 (265) Q Consensus 47 ~~S~G~~r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~-i~ 125 (265) T Consensus 59 yVSRG~~KL--~~ale~F~l~~k-~kv~LDiGsSTGGFTd~lLq~gA--k~VyavDVG~~Ql~~k---LR~---d~rV~~ 127 (245) T COG1189 59 YVSRGGLKL--EKALEEFELDVK-GKVVLDIGSSTGGFTDVLLQRGA--KHVYAVDVGYGQLHWK---LRN---DPRVIV 127 (245) T ss_pred CCCCHHHHH--HHHHHHCCCCCC-CCEEEEECCCCCCHHHHHHHCCC--CEEEEEECCCCCCCHH---HHC---CCCEEE T ss_conf 626189999--999996486889-97899826787629999987587--4799997037743786---735---984799 Q ss_pred CCCCCCCCCC---CCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHH Q ss_conf 2222233345---7554467403664201321344320121000485211776305544551011234565311133210 Q gi|254780624|r 126 FIEANAETLP---FEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLG 202 (265) Q Consensus 126 ~~~~da~~lp---~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~iiP~~g 202 (265) T Consensus 128 ~E~tN~r~l~~~~~~~-~~d~~v~DvS---FISL~~iLp~l~~l~~~~~~~v~L--vKPQFEagr~~--------v~-kk 192 (245) T COG1189 128 LERTNVRYLTPEDFTE-KPDLIVIDVS---FISLKLILPALLLLLKDGGDLVLL--VKPQFEAGREQ--------VG-KK 192 (245) T ss_pred EECCCHHHCCHHHCCC-CCCEEEEEEE---HHHHHHHHHHHHHHCCCCCEEEEE--ECCHHHHHHHH--------CC-CC T ss_conf 8527831189878176-7784799642---331998889999742788638997--36555540432--------27-68 Q ss_pred HHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEE--ECCC---CEEEEEEEEEEC Q ss_conf 25428876865789999968998999999997599537999--8556---649999998116 Q gi|254780624|r 203 RFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFT--NYTN---GVVALHSGWKCE 259 (265) Q Consensus 203 ~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~--~~~~---Gi~~i~~g~Kp~ 259 (265) T Consensus 193 Gvv-~d~~~~-------~~--v~~~i~~~~~~~g~~~~gl~~Spi~G~~GNiE~l~~~~k~~ 244 (245) T COG1189 193 GVV-RDPKLH-------AE--VLSKIENFAKELGFQVKGLIKSPIKGGKGNIEFLLLLKKSG 244 (245) T ss_pred CEE-CCCCHH-------HH--HHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEEEECCC T ss_conf 634-480158-------99--99999988864595786557267767878675624110368 |
|
| >pfam03514 GRAS GRAS family transcription factor | Back alignment and domain information |
|---|
Probab=92.76 E-value=0.66 Score=26.01 Aligned_cols=201 Identities=17% Similarity=0.156 Sum_probs=93.1 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHH----HHHHHH--CCCCCEEEEECC- Q ss_conf 9999876342115766761480179999998520644679977986023355777----776641--388632787213- Q gi|254780624|r 31 NHVFSRVSHRYDVMNDLMSLGLHRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVA----FRIAEA--SDNRSQIVVADI- 103 (265) Q Consensus 31 ~~~F~~iA~~YD~~N~~~S~G~~r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~----~~l~~~--~~~~~~v~giD~- 103 (265) T Consensus 81 ~~~~~~~~P~~kfa-~~ta-------NqAIleA~~g--~~~vHIIDf~i~~G~QWp~Liq~LA~R~~gpp~lRIT~i~~~ 150 (371) T pfam03514 81 YKLFYEVSPYLKFG-HFTA-------NQAILEAFEG--EERVHIIDFDIGQGLQWPSLIQALASRPGGPPHLRITGIGSP 150 (371) T ss_pred HHHHHHHCCHHHHH-HHHH-------HHHHHHHHCC--CCEEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCC T ss_conf 99999859899999-9999-------9999999758--971477613677764078999999519999976788222386 Q ss_pred ---CCCCCCCCCCCHHCCCCCCCCCCC----CC-CCCC-----CCCCCCCCCCCEEEEEECCCHHH----HHHHCCCCHH Q ss_conf ---322221111000001122222222----22-2333-----45755446740366420132134----4320121000 Q gi|254780624|r 104 ---NNEMLSVGRDRAFKENLQDCITFI----EA-NAET-----LPFEANSFDACTLAFGIRNMPHI----TLVLQEIYRI 166 (265) Q Consensus 104 ---s~~Ml~~a~~r~~~~~~~~~i~~~----~~-da~~-----lp~~d~sfD~V~~sf~l~~~~d~----~~~l~e~~Rv 166 (265) T Consensus 151 ~~~~~~~l~~~g~rL~~fA~~l~vpFef~~v~~~~~e~l~~~~l~~~~~EalaVn~~~~Lh~l~~~~~~~~~~~L~~ir~ 230 (371) T pfam03514 151 QFSSAEELEETGDRLAQFADSLGVPFEFNPLVAKRLEDLDLEMLDVRPGEALAVNCVFALHRLLDESVSLESTFLRLVKS 230 (371) T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHCCHHHCCCCCCCEEEEEEHHHHCCCCCCCCCHHHHHHHHHHH T ss_conf 66875899999999999999849984999750398344999993988997589972564255766665468999999997 Q ss_pred CCCCCEEEEE-ECCCCCCCHHHHH---HHHHHHCHHHHHHHHHCCCHHH-----HHHHHHHHHH------------CCCH Q ss_conf 4852117763-0554455101123---4565311133210254288768-----6578999996------------8998 Q gi|254780624|r 167 LKCGGRLLVL-EFSEVQGPVFKKI---YDMWSFKVIPQLGRFIAGDEEP-----YQYLIESIRR------------FPNQ 225 (265) Q Consensus 167 LKpGG~~~i~-df~~p~~~~~~~~---~~~y~~~iiP~~g~~~~~~~~~-----Y~yL~~Si~~------------f~~~ 225 (265) T Consensus 231 L~P~vv~lvE~ea~~n~~~F~~RF~eal~yYsalF-DsLea~~~~~s~~R~~vE~~~l~~eI~niVa~eG~~R~eR~e~~ 309 (371) T pfam03514 231 LNPKVVTLVEQEANHNSAPFLARFVEALHYYSALF-DSLEATLPRDSEERRKVERELLGREIVNVVACEGAERVERHETF 309 (371) T ss_pred CCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH-HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH T ss_conf 59978999973788888307899999999998999-96321379998899999999999999999815787621238867 Q ss_pred HHHHHHHHHCCCCEEEE Q ss_conf 99999999759953799 Q gi|254780624|r 226 QDFAAVISAAGFSNVSF 242 (265) Q Consensus 226 ~el~~~l~~aGF~~v~~ 242 (265) T Consensus 310 ~~W~~r~~~aGF~~~~l 326 (371) T pfam03514 310 GKWRERMRRAGFRPVPL 326 (371) T ss_pred HHHHHHHHHCCCEECCC T ss_conf 79999999687983676 |
Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable amino-terminus and a highly conserved carboxyl-terminus that contains five recognisable motifs. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction. |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-31 Score=223.87 Aligned_cols=167 Identities=23% Similarity=0.325 Sum_probs=133.3 Q ss_pred CCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE Q ss_conf 99779860233557777766413886327872133222211110000011222222222223334575544674036642 Q gi|254780624|r 70 KDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFG 149 (265) Q Consensus 70 ~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~ 149 (265) T Consensus 73 pGe~VLDLGcG~G~d~~~aA~~VG~~G~ViGVD~s~~ML~~Ar~~a~~~G~-~NVeF~~Gdae~LPl~D~SfDvViSncV 151 (258) T PRK11873 73 PGETVLDLGSGAGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY-TNVEFRLGEIEALPVADGSVDVIISNCV 151 (258) T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCC-CCEEEEEECCCCCCCCCCCEEEEEECCE T ss_conf 999899947887775999999869997799985999999999999997599-7559999555313689883519988246 Q ss_pred ECCCHHHHHHHCCCCHHCCCCCEEEEEECCCC--CCCHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHH Q ss_conf 01321344320121000485211776305544--5510112345653111332102542887686578999996899899 Q gi|254780624|r 150 IRNMPHITLVLQEIYRILKCGGRLLVLEFSEV--QGPVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQD 227 (265) Q Consensus 150 l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p--~~~~~~~~~~~y~~~iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~e 227 (265) T Consensus 152 lnl~pDk~~vl~E~~RVLKPGGRl~ISDiv~~~~lP~~~r~d~~l~~~C--------iaG--------------A~~~~~ 209 (258) T PRK11873 152 INLSPDKERVFREAFRVLKPGGRFAISDVVLTGELPEELRNDAALYAGC--------VAG--------------ALSVEE 209 (258) T ss_pred EECCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCHHHHHCHHHHHCC--------CCC--------------CCCHHH T ss_conf 7607987999999999628897899997412777999998598987312--------036--------------685999 Q ss_pred HHHHHHHCCCCEEEEEECC----------C-----C--EEEEEEEEEEC Q ss_conf 9999997599537999855----------6-----6--49999998116 Q gi|254780624|r 228 FAAVISAAGFSNVSFTNYT----------N-----G--VVALHSGWKCE 259 (265) Q Consensus 228 l~~~l~~aGF~~v~~~~~~----------~-----G--i~~i~~g~Kp~ 259 (265) T Consensus 210 ~~~~l~~aGF~~i~i~~~~~~~~~~~~~~~~~~~~~~~~s~~i~a~kp~ 258 (258) T PRK11873 210 YLAMLAEAGFVDITIEPKRDSREFLRGDASARQLDGYIFSATVEARKPA 258 (258) T ss_pred HHHHHHHCCCCCEEEEECHHHHHHHHHHCCCCCCCCEEEEEEEEEECCC T ss_conf 9999997699832998553279999840775771227999999986789 |
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase; InterPro: IPR010233 This entry represents an O-methyltransferase, which is believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and mitochondria (COQ3) , | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.1e-26 Score=189.18 Aligned_cols=158 Identities=22% Similarity=0.344 Sum_probs=130.7 Q ss_pred CCEEEECCHHHHHHHHHHHHHCCCCCE-EEEECCCCCCCCCCCCCHHCCCCCC----CCCCCCCCCCCCCCC---CCCCC Q ss_conf 977986023355777776641388632-7872133222211110000011222----222222223334575---54467 Q gi|254780624|r 71 DYRVLDVAGGTGDVAFRIAEASDNRSQ-IVVADINNEMLSVGRDRAFKENLQD----CITFIEANAETLPFE---ANSFD 142 (265) Q Consensus 71 ~~~iLDiGcGTG~~~~~l~~~~~~~~~-v~giD~s~~Ml~~a~~r~~~~~~~~----~i~~~~~da~~lp~~---d~sfD 142 (265) T Consensus 85 G~~vLDVGCGGGlLsE~lAR~G---a~~V~GID~~~~~i~~Ak~Ha~~~~~~~~~~K~i~Y~~~~~E~l~~~~h~~~~FD 161 (275) T TIGR01983 85 GLRVLDVGCGGGLLSEPLARLG---ANKVTGIDASEENIEVAKLHAKKDPLQEALDKKIEYRCTSVEELAEEQHTKKSFD 161 (275) T ss_pred CCEEEEECCCHHHHHHHHHHCC---CCEEEEEECHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC T ss_conf 9779984278578889997558---8425775211779999998887334023311114544430788730557841573 Q ss_pred CCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHH----HHHCHHHHHHHHHCCCHHHHHHHHHH Q ss_conf 40366420132134432012100048521177630554455101123456----53111332102542887686578999 Q gi|254780624|r 143 ACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDM----WSFKVIPQLGRFIAGDEEPYQYLIES 218 (265) Q Consensus 143 ~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~----y~~~iiP~~g~~~~~~~~~Y~yL~~S 218 (265) T Consensus 162 ~V~~mEvlEHV~dp~~f~~~c~~llkPgG~lF---~STINRt~kS~~~aIvgAEYiLr~vP-------KGTH~~------ 225 (275) T TIGR01983 162 VVTCMEVLEHVPDPQAFIKACAQLLKPGGILF---FSTINRTPKSYLLAIVGAEYILRWVP-------KGTHDW------ 225 (275) T ss_pred EEEEEEEEECCCCHHHHHHHHHHHCCCCCCEE---EECCCHHHHHHHHHHHHHHHHHHCCC-------CCCCCC------ T ss_conf 37643200002788899999998508998489---73000218999999999999851689-------872471------ Q ss_pred HHHCCCHHHHHHHHH----HCCCCEEEEEECCCC Q ss_conf 996899899999999----759953799985566 Q gi|254780624|r 219 IRRFPNQQDFAAVIS----AAGFSNVSFTNYTNG 248 (265) Q Consensus 219 i~~f~~~~el~~~l~----~aGF~~v~~~~~~~G 248 (265) T Consensus 226 -~KFi~P~EL~~~l~d~N~~~~l~~~~~~G~~Yn 258 (275) T TIGR01983 226 -EKFIKPSELTSWLEDDNRSAGLRVKDVKGLVYN 258 (275) T ss_pred -CCCCCHHHHHHHHHHCCCCCCEEEEEECCEEEE T ss_conf -015387999999851264676489975050763 |
A separate methylase (MenG/UbiE) catalyses the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.; GO: 0008425 2-polyprenyl-6-methoxy-14-benzoquinone methyltransferase activity, 0006744 ubiquinone biosynthetic process. |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.3e-21 Score=157.85 Aligned_cols=160 Identities=19% Similarity=0.275 Sum_probs=123.3 Q ss_pred CCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE Q ss_conf 99779860233557777766413886327872133222211110000011222222222223334575544674036642 Q gi|254780624|r 70 KDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFG 149 (265) Q Consensus 70 ~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~ 149 (265) T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G---a~VtgiD~se~~I~~Ak~ha~e~gv--~i~y~~~~~edl~~~~~~FDvV~cmEV 133 (243) T COG2227 59 PGLRVLDVGCGGGILSEPLARLG---ASVTGIDASEKPIEVAKLHALESGV--NIDYRQATVEDLASAGGQFDVVTCMEV 133 (243) T ss_pred CCCEEEEECCCCCHHHHHHHHCC---CEEEEECCCHHHHHHHHHHHHHCCC--CCCCHHHHHHHHHHCCCCCCEEEEHHH T ss_conf 77708874588328649999779---9469743876778999875442463--225223329999724897448977358 Q ss_pred ECCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHH Q ss_conf 01321344320121000485211776305544551011234565311133210254288768657899999689989999 Q gi|254780624|r 150 IRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFA 229 (265) Q Consensus 150 l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~el~ 229 (265) T Consensus 134 lEHv~dp~~~~~~c~~lvkP~G~lf---~STinrt~ka~~~~i~~---ae~vl~~vP~gTH~-------~~k~irp~El~ 200 (243) T COG2227 134 LEHVPDPESFLRACAKLVKPGGILF---LSTINRTLKAYLLAIIG---AEYVLRIVPKGTHD-------YRKFIKPAELI 200 (243) T ss_pred HHCCCCHHHHHHHHHHHCCCCCEEE---EECCCCCHHHHHHHHHH---HHHHHHHCCCCCHH-------HHHHCCHHHHH T ss_conf 7716999999999998629992899---94201388999999998---99998745886335-------88861989998 Q ss_pred HHHHHCCCCEEEEEECCC Q ss_conf 999975995379998556 Q gi|254780624|r 230 AVISAAGFSNVSFTNYTN 247 (265) Q Consensus 230 ~~l~~aGF~~v~~~~~~~ 247 (265) T Consensus 201 ~~~~~~~~~~~~~~g~~y 218 (243) T COG2227 201 RWLLGANLKIIDRKGLTY 218 (243) T ss_pred HHCCCCCCEEEEECCEEE T ss_conf 732357935885034265 |
|
| >pfam07021 MetW Methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.4e-18 Score=136.67 Aligned_cols=155 Identities=21% Similarity=0.280 Sum_probs=111.5 Q ss_pred CCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC--CCCCCCCCCCCEE Q ss_conf 79977986023355777776641388632787213322221111000001122222222222333--4575544674036 Q gi|254780624|r 69 SKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET--LPFEANSFDACTL 146 (265) Q Consensus 69 ~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~--lp~~d~sfD~V~~ 146 (265) T Consensus 12 ~~~srVLDlGCG~G~ll~~L~~~--k~v~~~GvEid~~~v~~a~~k--------g~~Vi~~D~d~~l~~f~d~sFD~VIl 81 (193) T pfam07021 12 PPGSRVLDLGCGDGSLLYLLQEE--KQVDGRGIELDAAGVAECVAK--------GLSVIQGDADKGLEHFPDKSFDYVIL 81 (193) T ss_pred CCCCEEEEECCCCCHHHHHHHHC--CCCCEEEECCCHHHHHHHHHC--------CCCEECCCHHHCHHHCCCCCCCEEEH T ss_conf 89698998368898999999876--698769833899999999864--------79545077445974577678037869 Q ss_pred EEEECCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHH Q ss_conf 64201321344320121000485211776305544551011234565311133210254288768657899999689989 Q gi|254780624|r 147 AFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQ 226 (265) Q Consensus 147 sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~ 226 (265) T Consensus 82 s~vLqhl~~P~~vL~EmlRV---gk~~IV---SfPNf~hw~~R~~ll~~------GrmPvt~~lp~~WydTpnih~~Ti~ 149 (193) T pfam07021 82 SQTLQATRNPREVLDELLRI---GRRAIV---SFPNFGHWRVRWSLLSR------GRMPVTDLLPYTWYDTPNIHFCTIR 149 (193) T ss_pred HHHHHHHCCCHHHHHHHHHH---CCEEEE---EECCHHHHHHHHHHHHC------CCCCCCCCCCCCCCCCCCCCCCCHH T ss_conf 87998752819999998512---686999---94361479999999947------8755589999761489984744599 Q ss_pred HHHHHHHHCCCCEEEEEEC Q ss_conf 9999999759953799985 Q gi|254780624|r 227 DFAAVISAAGFSNVSFTNY 245 (265) Q Consensus 227 el~~~l~~aGF~~v~~~~~ 245 (265) T Consensus 150 DFe~lc~~~~i~I~~~~~l 168 (193) T pfam07021 150 DFEELCEELNLKVEDRAAL 168 (193) T ss_pred HHHHHHHHCCCEEEEEEEE T ss_conf 9999999889989999997 |
This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in gram-positive bacteria and certain fungi, the second and third steps are a direct sulfhydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells. |
| >pfam05148 Methyltransf_8 Hypothetical methyltransferase | Back alignment and domain information |
|---|
Probab=99.53 E-value=3e-13 Score=105.57 Aligned_cols=142 Identities=25% Similarity=0.391 Sum_probs=106.5 Q ss_pred HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCC Q ss_conf 99985206446799779860233557777766413886327872133222211110000011222222222223334575 Q gi|254780624|r 58 EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFE 137 (265) Q Consensus 58 ~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~ 137 (265) T Consensus 56 d~iI~~lk~~p~-~~vIaD~GCGdA~lA~~----~~~~~kV~SfDLva~----------------n~~Vt~cDi~~~PL~ 114 (214) T pfam05148 56 DVIIRKLKRRPG-NGVIADLGCGEARIAFR----KREFENVHSFDLVAV----------------NKRVIPCDMARVPLE 114 (214) T ss_pred HHHHHHHHHCCC-CEEEEECCCCHHHHHHH----CCCCCEEEEEECCCC----------------CCCCCCCCCCCCCCC T ss_conf 999999984899-71899758865799986----467873885132568----------------988351353368788 Q ss_pred CCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHH Q ss_conf 54467403664201321344320121000485211776305544551011234565311133210254288768657899 Q gi|254780624|r 138 ANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIE 217 (265) Q Consensus 138 d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~iiP~~g~~~~~~~~~Y~yL~~ 217 (265) T Consensus 115 d~svDvaVfCLSLM-GTN~~~fi~EA~RvLk~~G~L~IAEV~-------------------------------------- 155 (214) T pfam05148 115 DESVDVAVFCLSLM-GTNIADFLKEANRILKNGGLLKIAEVR-------------------------------------- 155 (214) T ss_pred CCCEEEEEEEHHHH-CCCHHHHHHHHHHHCCCCCEEEEEEEE-------------------------------------- T ss_conf 77263687758762-887799999987603108789999974-------------------------------------- Q ss_pred HHHHCCCHHHHHHHHHHCCCCEEEEEECCCCEEEEEEEEEECCCC Q ss_conf 999689989999999975995379998556649999998116454 Q gi|254780624|r 218 SIRRFPNQQDFAAVISAAGFSNVSFTNYTNGVVALHSGWKCENIG 262 (265) Q Consensus 218 Si~~f~~~~el~~~l~~aGF~~v~~~~~~~Gi~~i~~g~Kp~~~~ 262 (265) T Consensus 156 --SRf~~~~~Fv~~~~~~GF~-~~~~d~~n~~F~~f~F~K~~~~~ 197 (214) T pfam05148 156 --SRFPSVGLFERAFTKLGFE-VEHVDLSNAQFVLFEFQKTSRVG 197 (214) T ss_pred --CCCCCHHHHHHHHHHCCCE-EEEEECCCCEEEEEEEEECCCCC T ss_conf --0168989999999975976-77530688889999999866567 |
This family consists of several uncharacterized eukaryotic proteins which are related to methyltransferases pfam01209. |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-13 Score=107.50 Aligned_cols=141 Identities=17% Similarity=0.294 Sum_probs=101.5 Q ss_pred CCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE-- Q ss_conf 997798602335577777664138863278721332222111100000112222222222233345755446740366-- Q gi|254780624|r 70 KDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLA-- 147 (265) Q Consensus 70 ~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~s-- 147 (265) T Consensus 109 ~~~~ilDlgtGSGcI~isLa~~~-p~~~v~a~DiS~~Al~~A~~Na~~~~l-~~v~~~~~d~~~-~~~~~~fDlIVSNPP 185 (277) T PRK09328 109 QPCRILDLGTGTGAIALALASER-PDCEVTAVDRMPDAVALAQRNAQHLAI-KNVRILQSDWFS-ALSGQQFAMIVSNPP 185 (277) T ss_pred CCCEEEEECCCHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHCCC-CEEEEEECCCHH-HCCCCCCCEEEECCC T ss_conf 78818995455699999999867-798999964899999999999998098-869999447521-137877788997899 Q ss_pred EE-----------ECC------------CHHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHHHH Q ss_conf 42-----------013------------2134432012100048521177630554455101123456531113321025 Q gi|254780624|r 148 FG-----------IRN------------MPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLGRF 204 (265) Q Consensus 148 f~-----------l~~------------~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~iiP~~g~~ 204 (265) T Consensus 186 YI~~~~~~~~~~~v~~EP~~AL~gg~dGl~~~~~ii~~a~~~L~~~G~l~~-Eig~------------------------ 240 (277) T PRK09328 186 YIDAQDPHLQQGDVRFEPLSALVAADNGMADLAHIIEQARQYLVPGGWLLL-EHGW------------------------ 240 (277) T ss_pred CCCCCHHHHCCHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEE-EECH------------------------ T ss_conf 877000343824216683899817975899999999999984466989999-9681------------------------ Q ss_pred HCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCEEEEEEEE Q ss_conf 4288768657899999689989999999975995379998556649999998 Q gi|254780624|r 205 IAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNYTNGVVALHSGW 256 (265) Q Consensus 205 ~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~~~~Gi~~i~~g~ 256 (265) T Consensus 241 ------------------~Q~~~v~~l~~~~gf~~i~~~kDl~g~~R~v~ar 274 (277) T PRK09328 241 ------------------QQGEAVRQLFIRAGYSDVETCRDYGDNERVTLGR 274 (277) T ss_pred ------------------HHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEE T ss_conf ------------------5899999999967997047861789992399999 |
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.6e-14 Score=109.38 Aligned_cols=137 Identities=22% Similarity=0.324 Sum_probs=98.6 Q ss_pred CCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE-- Q ss_conf 997798602335577777664138863278721332222111100000112222222222233345755446740366-- Q gi|254780624|r 70 KDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLA-- 147 (265) Q Consensus 70 ~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~s-- 147 (265) T Consensus 121 ~~~~iLDlGtGSG~Iai~la~~~-p~~~v~a~DiS~~Al~~A~~N~~~~~l~~rv~~~~~D~~~-~~~~~~fDlIVSNPP 198 (284) T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPP 198 (284) T ss_pred CCCEEEEECCCCHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHH-HCCCCCCCEEEECCC T ss_conf 77715552168079999999878-9987999989999999999999860854336888351433-145777787997799 Q ss_pred EE-----------ECC------------CHHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHHHH Q ss_conf 42-----------013------------2134432012100048521177630554455101123456531113321025 Q gi|254780624|r 148 FG-----------IRN------------MPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLGRF 204 (265) Q Consensus 148 f~-----------l~~------------~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~iiP~~g~~ 204 (265) T Consensus 199 YI~~~e~~~l~~ev~~EP~~AL~gG~dGL~~yr~Ii~~a~~~L~pgG~l~l-EiG~------------------------ 253 (284) T TIGR03533 199 YVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVV-EVGN------------------------ 253 (284) T ss_pred CCCHHHHHHCCHHHCCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEE-EECC------------------------ T ss_conf 788465544976411586998758955879999999988984256978999-9797------------------------ Q ss_pred HCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCEEEE Q ss_conf 428876865789999968998999999997599537999855664999 Q gi|254780624|r 205 IAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNYTNGVVAL 252 (265) Q Consensus 205 ~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~~~~Gi~~i 252 (265) T Consensus 254 -------------------~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (284) T TIGR03533 254 -------------------SMEALEEAYPDVPFTWLEFENGGDGVFLL 282 (284) T ss_pred -------------------CHHHHHHHCCCCCCEEEEECCCCCEEEEE T ss_conf -------------------88999986689996477415898369998 |
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >TIGR02081 metW methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.1e-14 Score=112.99 Aligned_cols=157 Identities=18% Similarity=0.310 Sum_probs=110.1 Q ss_pred HHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCC------EEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCC Q ss_conf 99852064467997798602335577777664138863------278721332222111100000112222222222233 Q gi|254780624|r 59 AMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRS------QIVVADINNEMLSVGRDRAFKENLQDCITFIEANAE 132 (265) Q Consensus 59 ~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~------~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~ 132 (265) T Consensus 6 ~I~~~I----p~GSRVLDLGCGdG~LL~~L~d~k~v~GPPttehRL~G~Eid~~~v~Ac~~R--------Gv~VIq~Dld 73 (205) T TIGR02081 6 LILDLI----PPGSRVLDLGCGDGELLALLRDEKQVRGPPTTEHRLYGIEIDQDGVLACVAR--------GVSVIQGDLD 73 (205) T ss_pred HHHHHC----CCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEECHHHHHHHHHC--------CCCEECCCCC T ss_conf 898616----8887364101688789999997437898887120001023454459999862--------5201300600 Q ss_pred C-C-CCCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCHH Q ss_conf 3-4-5755446740366420132134432012100048521177630554455101123456531113321025428876 Q gi|254780624|r 133 T-L-PFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLGRFIAGDEE 210 (265) Q Consensus 133 ~-l-p~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~iiP~~g~~~~~~~~ 210 (265) T Consensus 74 ~GL~~F~D~~FD~ViLsQTLQa~~Np~~iL~EmLRvg~---~aI---VSFPNFGyW~~R~~i~~~GRMPk-----Vt~~l 142 (205) T TIGR02081 74 EGLEAFPDKSFDYVILSQTLQATRNPEEILDEMLRVGR---RAI---VSFPNFGYWRVRWSILTGGRMPK-----VTDEL 142 (205) T ss_pred CCCCCCCCCCCCEEEECHHHHHHHCHHHHHHHHHHHCC---EEE---EECCCCCCHHCHHHEECCCCCCC-----CCCCC T ss_conf 34011678876625421356642256899988776738---515---60588771101031110785887-----88787 Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCC Q ss_conf 8657899999689989999999975995 Q gi|254780624|r 211 PYQYLIESIRRFPNQQDFAAVISAAGFS 238 (265) Q Consensus 211 ~Y~yL~~Si~~f~~~~el~~~l~~aGF~ 238 (265) T Consensus 143 PY~WynTPNiHfcT~~DF~~L~~~~~~~ 170 (205) T TIGR02081 143 PYEWYNTPNIHFCTLADFEELCEELNLR 170 (205) T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCCE T ss_conf 8888888875323377899999871965 |
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells . . |
| >TIGR03534 RF_mod_HemK protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.9e-13 Score=104.15 Aligned_cols=135 Identities=26% Similarity=0.416 Sum_probs=96.0 Q ss_pred CCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE- Q ss_conf 7997798602335577777664138863278721332222111100000112222222222233345755446740366- Q gi|254780624|r 69 SKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLA- 147 (265) Q Consensus 69 ~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~s- 147 (265) T Consensus 86 ~~~~~ilDlgtGSG~I~i~la~~~-~~~~v~~~Dis~~Al~~A~~N~~~~~~-~~v~~~~~d~~~-~~~~~~fDlIvsNP 162 (251) T TIGR03534 86 KGPLKVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAKRLGL-ENVRFLKSDWFE-PLPGGKFDLIVSNP 162 (251) T ss_pred CCCCEEEEECCCHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHCCC-CEEEEEECCHHH-CCCCCCCCEEEECC T ss_conf 489869995567169999999967-997899998987999999999998099-826865131432-15689866899789 Q ss_pred -EE-------E----CCC-------------HHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHH Q ss_conf -42-------0----132-------------1344320121000485211776305544551011234565311133210 Q gi|254780624|r 148 -FG-------I----RNM-------------PHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLG 202 (265) Q Consensus 148 -f~-------l----~~~-------------~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~iiP~~g 202 (265) T Consensus 163 PYI~~~e~~~l~~eV~~~EP~~AL~gg~dGl~~~~~ii~~a~~~L~~~G~l~~-Eig~---------------------- 219 (251) T TIGR03534 163 PYIPEADIHLLDPEVRFHEPKLALFAGEDGLDFYRRIIAQAPRYLKPGGWLLL-EIGY---------------------- 219 (251) T ss_pred CCCCHHHHHHCCCHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEE-EECH---------------------- T ss_conf 98874566632860102672999717984699999999999985367988999-9683---------------------- Q ss_pred HHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCE Q ss_conf 25428876865789999968998999999997599537999855664 Q gi|254780624|r 203 RFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNYTNGV 249 (265) Q Consensus 203 ~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~~~~Gi 249 (265) T Consensus 220 --------------------~q~~~v~~l~~~~gf~~i~~~kDl~g~ 246 (251) T TIGR03534 220 --------------------DQGEAVRALFEAAGFADVETRKDLAGK 246 (251) T ss_pred --------------------HHHHHHHHHHHHCCCCEEEEEECCCCC T ss_conf --------------------789999999996899706885078989 |
Members of this protein family are HemK, a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. However, the family is diverse enough that even many members of the seed alignment do not score above the seed alignment, which was set high enough to exclude all instances of PrmB. |
| >KOG3045 consensus | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.3e-12 Score=99.87 Aligned_cols=138 Identities=20% Similarity=0.358 Sum_probs=104.3 Q ss_pred HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCC Q ss_conf 99985206446799779860233557777766413886327872133222211110000011222222222223334575 Q gi|254780624|r 58 EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFE 137 (265) Q Consensus 58 ~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~ 137 (265) T Consensus 169 d~ii~~ik~r~~-~~vIaD~GCGEakiA~----~~~--~kV~SfDL~a~----------------~~~V~~cDm~~vPl~ 225 (325) T KOG3045 169 DVIIRKIKRRPK-NIVIADFGCGEAKIAS----SER--HKVHSFDLVAV----------------NERVIACDMRNVPLE 225 (325) T ss_pred HHHHHHHHHCCC-CEEEEECCCCHHHHHH----CCC--CCEEEEEEECC----------------CCCEEECCCCCCCCC T ss_conf 999999971767-6478853664233320----466--65046630027----------------885353224478676 Q ss_pred CCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHH Q ss_conf 54467403664201321344320121000485211776305544551011234565311133210254288768657899 Q gi|254780624|r 138 ANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIE 217 (265) Q Consensus 138 d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~iiP~~g~~~~~~~~~Y~yL~~ 217 (265) T Consensus 226 d~svDvaV~CLSL-Mgtn~~df~kEa~RiLk~gG~l~IAEv~-------------------------------------- 266 (325) T KOG3045 226 DESVDVAVFCLSL-MGTNLADFIKEANRILKPGGLLYIAEVK-------------------------------------- 266 (325) T ss_pred CCCCCEEEEEHHH-HCCCHHHHHHHHHHHHCCCCEEEEEEHH-------------------------------------- T ss_conf 6754478752755-3433899999998873358669998602-------------------------------------- Q ss_pred HHHHCCCHHHHHHHHHHCCCCEEEEEECCCCEEEEEEEEEECC Q ss_conf 9996899899999999759953799985566499999981164 Q gi|254780624|r 218 SIRRFPNQQDFAAVISAAGFSNVSFTNYTNGVVALHSGWKCEN 260 (265) Q Consensus 218 Si~~f~~~~el~~~l~~aGF~~v~~~~~~~Gi~~i~~g~Kp~~ 260 (265) T Consensus 267 --SRf~dv~~f~r~l~~lGF-~~~~~d~~n~~F~lfefkK~~~ 306 (325) T KOG3045 267 --SRFSDVKGFVRALTKLGF-DVKHKDVSNKYFTLFEFKKTPK 306 (325) T ss_pred --HHCCCHHHHHHHHHHCCC-EEEEHHHHCCEEEEEEEECCCC T ss_conf --213408899999987287-0221100004189899733783 |
|
| >pfam03291 Pox_MCEL mRNA capping enzyme | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.9e-13 Score=104.77 Aligned_cols=165 Identities=19% Similarity=0.297 Sum_probs=102.6 Q ss_pred CCCCEEEECCHHHH-HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCC---------CCCCCCCCCCCC----- Q ss_conf 79977986023355-777776641388632787213322221111000001122---------222222222333----- Q gi|254780624|r 69 SKDYRVLDVAGGTG-DVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQ---------DCITFIEANAET----- 133 (265) Q Consensus 69 ~~~~~iLDiGcGTG-~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~---------~~i~~~~~da~~----- 133 (265) T Consensus 62 ~~~~~VLDl~CGkGGDL~Kw~~~---~i~~~vgiDis~~sI~~A~~RY~~~~~~~~~~~~~~~f~~~f~~~D~~~~~l~~ 138 (327) T pfam03291 62 KPKRKVLDLDCGKGGDLEKYFKG---GISGLIGTDIAEVSIEQAQERYNDLNSRSKSKYYKFDFIAEFITGDCFVSSVRE 138 (327) T ss_pred CCCCEEEEECCCCCCCHHHHHHC---CCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCHHHHHH T ss_conf 88987998368664457889747---986899966899999999999998642114444566750012315621567877 Q ss_pred -CCCCCCCCCCCEEEEEECCC-HH---HHHHHCCCCHHCCCCCEEEEEECCCCCCCHH-HHHHHH------HHHC----- Q ss_conf -45755446740366420132-13---4432012100048521177630554455101-123456------5311----- Q gi|254780624|r 134 -LPFEANSFDACTLAFGIRNM-PH---ITLVLQEIYRILKCGGRLLVLEFSEVQGPVF-KKIYDM------WSFK----- 196 (265) Q Consensus 134 -lp~~d~sfD~V~~sf~l~~~-~d---~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~-~~~~~~------y~~~----- 196 (265) T Consensus 139 ~~~~~~~~FDvVS~QFAiHY~Fese~~a~~~l~Nvs~~Lk~GG~FIG---T~~d~~~i~~~l~~~~~~~~~~gN~~y~i~ 215 (327) T pfam03291 139 VFEPGQRKFDIVSWQFAIHYSFESEEKARTMLRNLAELLASGGKFIG---TTPDGDFIIKKLTATFVEHKSFGNSIYYVS 215 (327) T ss_pred HCCCCCCCCCEEEHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEE---EECCHHHHHHHHHHHCCCCCCCCCEEEEEE T ss_conf 53577885037751787898764899999999999986058988999---966789999999860345320586038999 Q ss_pred -----HHHHHHHHHCCCHHHHH-HHHHHHHHCC----CHHHHHHHHHHCCCCEEEEEECC Q ss_conf -----13321025428876865-7899999689----98999999997599537999855 Q gi|254780624|r 197 -----VIPQLGRFIAGDEEPYQ-YLIESIRRFP----NQQDFAAVISAAGFSNVSFTNYT 246 (265) Q Consensus 197 -----iiP~~g~~~~~~~~~Y~-yL~~Si~~f~----~~~el~~~l~~aGF~~v~~~~~~ 246 (265) T Consensus 216 f~~~~~~~~fG~-------~y~f~l~~~v~~~~EYlV~~~~~~~l~~eygleLv~~~~F~ 268 (327) T pfam03291 216 FEKDPPRPPFGI-------KYVYNLEDMVTDVPEYLVPFETLVELAEEYGLELVDKKTFH 268 (327) T ss_pred ECCCCCCCCCCC-------EEEEEECCCCCCCCEEECCHHHHHHHHHHCCCEEEEECCHH T ss_conf 468899999986-------79999721178887313679999999998598999946879 |
This family of enzymes are related to pfam03919. |
| >KOG1271 consensus | Back alignment and domain information |
|---|
Probab=99.23 E-value=3e-11 Score=92.70 Aligned_cols=136 Identities=19% Similarity=0.344 Sum_probs=100.0 Q ss_pred CCCC-EEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE- Q ss_conf 7997-79860233557777766413886327872133222211110000011222222222223334575544674036- Q gi|254780624|r 69 SKDY-RVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTL- 146 (265) Q Consensus 69 ~~~~-~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~- 146 (265) T Consensus 65 ~~~A~~VlDLGtGNG~~L~~L~~egf-~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDK 143 (227) T KOG1271 65 SKQADRVLDLGTGNGHLLFQLAKEGF-QSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDK 143 (227) T ss_pred CCCCCCEEECCCCCHHHHHHHHHHCC-CCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCEEEEEEC T ss_conf 22432116615796188999887138-88864531578899999878875278853168873225775555432389605 Q ss_pred ----EEEECC--C-HHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHH Q ss_conf ----642013--2-134432012100048521177630554455101123456531113321025428876865789999 Q gi|254780624|r 147 ----AFGIRN--M-PHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESI 219 (265) Q Consensus 147 ----sf~l~~--~-~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~iiP~~g~~~~~~~~~Y~yL~~Si 219 (265) T Consensus 144 GT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC----------------------------------------- 182 (227) T KOG1271 144 GTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC----------------------------------------- 182 (227) T ss_pred CCEEEEECCCCCCCCCEEEEHHHHHHCCCCCCEEEEEEC----------------------------------------- T ss_conf 741225507777665434435568630388967999855----------------------------------------- Q ss_pred HHCCCHHHHHHHHHHCCCCEEE---EEECCCC Q ss_conf 9689989999999975995379---9985566 Q gi|254780624|r 220 RRFPNQQDFAAVISAAGFSNVS---FTNYTNG 248 (265) Q Consensus 220 ~~f~~~~el~~~l~~aGF~~v~---~~~~~~G 248 (265) T Consensus 183 -N-~T~dELv~~f~~~~f~~~~tvp~ptF~Fg 212 (227) T KOG1271 183 -N-FTKDELVEEFENFNFEYLSTVPTPTFMFG 212 (227) T ss_pred -C-CCHHHHHHHHHCCCEEEEEEECCCEEEEC T ss_conf -7-65899999972597499996055258865 |
|
| >PRK09329 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.9e-11 Score=91.27 Aligned_cols=150 Identities=19% Similarity=0.286 Sum_probs=99.6 Q ss_pred HHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 98520644679977986023355777776641388632787213322221111000001122222222222333457554 Q gi|254780624|r 60 MVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEAN 139 (265) Q Consensus 60 ~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~ 139 (265) T Consensus 100 ~l~~~~~~-~~~~~~lDlGtGSG~I~isla~~~-p~~~v~avDiS~~Al~~A~~Na~~~~~--~v~~~~~dl~~-~~-~~ 173 (285) T PRK09329 100 IIGYLQSH-KEIQTFYDVCCGSGCIGLAIKKHC-PHVHVVLSDICPQALAVAKSNAKSNGL--DVDFLLGDLFA-PF-SR 173 (285) T ss_pred HHHHHHHC-CCCCEEEEECCCHHHHHHHHHHHC-CCCEEEHHHCCHHHHHHHHHHHHHCCC--CEEEEECCHHH-HH-CC T ss_conf 99998618-777778884541799999999858-986588033769999999999997299--47999763003-33-47 Q ss_pred CCCCCEEE--EE-----------ECCC-------------HHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHH Q ss_conf 46740366--42-----------0132-------------1344320121000485211776305544551011234565 Q gi|254780624|r 140 SFDACTLA--FG-----------IRNM-------------PHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMW 193 (265) Q Consensus 140 sfD~V~~s--f~-----------l~~~-------------~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y 193 (265) T Consensus 174 ~~DlIvSNPPYI~~~e~~~l~~eV~~~EP~~AL~gg~dGl~~~r~i~~~a~~~L~~~G~l~~-Eig~------------- 239 (285) T PRK09329 174 PADAFVCNPPYLSFKEFFHVDPEVRCHEPWKALVGGSSGLEFYQRIAQELPKILVPGGVGWL-EIGS------------- 239 (285) T ss_pred CCCEEEECCCCCCHHHHHHCCHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEE-EECC------------- T ss_conf 67889989998884445449875543670998847973899999999999996004988999-9685------------- Q ss_pred HHCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCEEEEEEEEEEC Q ss_conf 311133210254288768657899999689989999999975995379998556649999998116 Q gi|254780624|r 194 SFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNYTNGVVALHSGWKCE 259 (265) Q Consensus 194 ~~~iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~~~~Gi~~i~~g~Kp~ 259 (265) T Consensus 240 -----------------------------~Q~~~v~~l~~~~g~~~~v~kDl-~G~~R~l~~~~~~ 275 (285) T PRK09329 240 -----------------------------SQGESVKKIFAKHGISGRVLQDL-AGLDRFFFLENQA 275 (285) T ss_pred -----------------------------HHHHHHHHHHHHCCCCCEEEECC-CCCCCEEEEEECC T ss_conf -----------------------------48999999999669964281179-9995389998368 |
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1e-10 Score=89.17 Aligned_cols=140 Identities=21% Similarity=0.335 Sum_probs=95.4 Q ss_pred EEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE--EEE Q ss_conf 798602335577777664138863278721332222111100000112222222222233345755446740366--420 Q gi|254780624|r 73 RVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLA--FGI 150 (265) Q Consensus 73 ~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~s--f~l 150 (265) T Consensus 113 ~ilDlGTGSG~iai~la~~~~-~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~-~~~~-~fDlIVsNPPYip 188 (280) T COG2890 113 RILDLGTGSGAIAIALAKEGP-DAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFE-PLRG-KFDLIVSNPPYIP 188 (280) T ss_pred CEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHHCC-CCEEEEECCHHH-CCCC-CCCEEEECCCCCC T ss_conf 189965883199999996189-88799998999999999999998289-747987400333-4688-8577996899888 Q ss_pred CC-----------------------CHHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHHHHHCC Q ss_conf 13-----------------------2134432012100048521177630554455101123456531113321025428 Q gi|254780624|r 151 RN-----------------------MPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLGRFIAG 207 (265) Q Consensus 151 ~~-----------------------~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~iiP~~g~~~~~ 207 (265) T Consensus 189 ~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~l-e~----------------------------- 238 (280) T COG2890 189 AEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLIL-EI----------------------------- 238 (280) T ss_pred CCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEE-EE----------------------------- T ss_conf 852113742135897998724877789999999989987286828999-97----------------------------- Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHCC-CCEEEEEECCCCEEEEEEEEEEC Q ss_conf 87686578999996899899999999759-95379998556649999998116 Q gi|254780624|r 208 DEEPYQYLIESIRRFPNQQDFAAVISAAG-FSNVSFTNYTNGVVALHSGWKCE 259 (265) Q Consensus 208 ~~~~Y~yL~~Si~~f~~~~el~~~l~~aG-F~~v~~~~~~~Gi~~i~~g~Kp~ 259 (265) T Consensus 239 -------------g~~q~~~v~~~~~~~~~~~~v~~~~d~~g~~rv~~~~~~~ 278 (280) T COG2890 239 -------------GLTQGEAVKALFEDTGFFEIVETLKDLFGRDRVVLAKLRS 278 (280) T ss_pred -------------CCCCHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEEEECC T ss_conf -------------6984899999999749844766551456763588876024 |
|
| >pfam12147 Hydrolase_5 Putative lysophospholipase | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.2e-09 Score=82.42 Aligned_cols=169 Identities=18% Similarity=0.303 Sum_probs=118.8 Q ss_pred CCCCCEEEECCHHHHHHHHHHHHHCCC-CCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCC-CC--CCCCCC Q ss_conf 679977986023355777776641388-63278721332222111100000112222222222233345-75--544674 Q gi|254780624|r 68 KSKDYRVLDVAGGTGDVAFRIAEASDN-RSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLP-FE--ANSFDA 143 (265) Q Consensus 68 ~~~~~~iLDiGcGTG~~~~~l~~~~~~-~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp-~~--d~sfD~ 143 (265) T Consensus 133 ~g~~v~ilDIAaG~GRYvldal~~~~~~~~~illRDys~~NV~~G~~li~ergl~~ia~Fe~gdAFd~~~la~l~p~P~l 212 (311) T pfam12147 133 SGRPVRILDIAAGHGRYVLDALAKAPQRPDSILLRDYSPLNVEQGRALIAERGLEDIARFEQGDAFDPASLAALTPAPTL 212 (311) T ss_pred CCCCEEEEEECCCCCHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCHHEEEEECCCCCHHHHHCCCCCCCE T ss_conf 79956999851686162999998579887458851488877999999999749620006740576797676326999978 Q ss_pred CEEEEEE-CCCHH---HHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHHHHHCCC--HHHHHHHHH Q ss_conf 0366420-13213---44320121000485211776305544551011234565311133210254288--768657899 Q gi|254780624|r 144 CTLAFGI-RNMPH---ITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLGRFIAGD--EEPYQYLIE 217 (265) Q Consensus 144 V~~sf~l-~~~~d---~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~iiP~~g~~~~~~--~~~Y~yL~~ 217 (265) T Consensus 213 ~IVS-GLyELF~dN~lv~~sl~Gl~~ai~~gGyLIY--TgQPWHPQLe~------------IAr~LtSHr~G~aWV---- 273 (311) T pfam12147 213 AIVS-GLYELFPDNDLVRRSLAGLAQAVEPGGYLIY--TGQPWHPQLEM------------IARALTSHRGGEAWV---- 273 (311) T ss_pred EEEE-CHHHHCCCHHHHHHHHHHHHHHCCCCCEEEE--CCCCCCHHHHH------------HHHHHHCCCCCCCCE---- T ss_conf 9970-1266368729999999999975089978998--29988667999------------999972566888676---- Q ss_pred HHHHCCCHHHHHHHHHHCCCCEEEEEECCCCEEEEEEEEE Q ss_conf 9996899899999999759953799985566499999981 Q gi|254780624|r 218 SIRRFPNQQDFAAVISAAGFSNVSFTNYTNGVVALHSGWK 257 (265) Q Consensus 218 Si~~f~~~~el~~~l~~aGF~~v~~~~~~~Gi~~i~~g~K 257 (265) T Consensus 274 --MRrRsQ~EmD~Lv~~aGf~K~~q~iD~~GIFTVSlA~r 311 (311) T pfam12147 274 --MRRRSQAEMDELVEAAGFRKIAQRIDEWGIFTVSLARR 311 (311) T ss_pred --EEECCHHHHHHHHHHCCCCHHHHEECCCCEEEEEEECC T ss_conf --77367999999999819721555023677068986329 |
This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. |
| >pfam05219 DREV DREV methyltransferase | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.1e-10 Score=84.25 Aligned_cols=146 Identities=16% Similarity=0.182 Sum_probs=89.9 Q ss_pred CCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE Q ss_conf 99779860233557777766413886327872133222211110000011222222222223334575544674036642 Q gi|254780624|r 70 KDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFG 149 (265) Q Consensus 70 ~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~ 149 (265) T Consensus 94 ~~~~LLDlGAGdG~VT~~la~~F~---~V~aTE~S~~Mr~rL~~----rgf------~vl~~~~~~~~~~~fDvIscLNv 160 (265) T pfam05219 94 EPVTLLDLGAGDGEITLRMAPTFE---EVYATELSWTMRDRLKK----KNY------NVLTEIEWQETDVNLDLILCLNL 160 (265) T ss_pred CCCEEEEECCCCCHHHHHHHHHHC---EEEEEECCHHHHHHHHH----CCC------EEEEEHHCCCCCCCEEEEHHHHH T ss_conf 766478835899789999997523---58887278999999997----598------68750120356874455422244 Q ss_pred ECCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHH--HHHCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHH Q ss_conf 0132134432012100048521177630554455101123456--53111332102542887686578999996899899 Q gi|254780624|r 150 IRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDM--WSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQD 227 (265) Q Consensus 150 l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~--y~~~iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~e 227 (265) T Consensus 161 LDRc~~P~~LL~~i~~~L~P~G~lilA-vVlPf~pyVE~~~~~~~~p~e~l~~-----~g--~~~E---~~------v~~ 223 (265) T pfam05219 161 LDRCFDPFKLLEDIHLALAPNGRVIVA-LVLPYMHYVETNTGSHLPPRPLLEN-----NG--ASFE---EE------VAR 223 (265) T ss_pred HHCCCCHHHHHHHHHHHCCCCCEEEEE-EEECCCCEEECCCCCCCCCHHHCCC-----CC--CCHH---HH------HHH T ss_conf 531388699999999724999679999-9825620177589877995211378-----99--8099---99------999 Q ss_pred HHHHHHHCCCCEEEEEEC Q ss_conf 999999759953799985 Q gi|254780624|r 228 FAAVISAAGFSNVSFTNY 245 (265) Q Consensus 228 l~~~l~~aGF~~v~~~~~ 245 (265) T Consensus 224 l~~vl~p~GF~v~~~tR~ 241 (265) T pfam05219 224 FMEVFENAGFRVEAWTRL 241 (265) T ss_pred HHHHHHCCCCEEEEEECC T ss_conf 999876079578887326 |
This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown. However, these proteins appear to be related to other methyltransferases (Bateman A pers obs). |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.7e-07 Score=67.22 Aligned_cols=176 Identities=19% Similarity=0.247 Sum_probs=105.5 Q ss_pred CCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC-CCCCCC--CCCCC Q ss_conf 679977986023355777776641388632787213322221111000001122222222222333-457554--46740 Q gi|254780624|r 68 KSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET-LPFEAN--SFDAC 144 (265) Q Consensus 68 ~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~-lp~~d~--sfD~V 144 (265) T Consensus 61 ~~~~~~lIElGsG~~~Kt~~LL~al~~~~~Y~plDIS~~~L~~s~~~l~~~~p~l~v~~v~~dy~~~l~~~~~~~~~~rl 140 (301) T TIGR03438 61 TGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRL 140 (301) T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECHHCHHHCCCCCCCCCCE T ss_conf 27676477317886237899999862156388775689999999999997789976899963331574456655788758 Q ss_pred EEEE--EECCCHHH--HHHHCCCCHHCCCCCEEEE-EECCCCCCCHHHHHHH-------HHHHCHHHHHHHHHCCCH--H Q ss_conf 3664--20132134--4320121000485211776-3055445510112345-------653111332102542887--6 Q gi|254780624|r 145 TLAF--GIRNMPHI--TLVLQEIYRILKCGGRLLV-LEFSEVQGPVFKKIYD-------MWSFKVIPQLGRFIAGDE--E 210 (265) Q Consensus 145 ~~sf--~l~~~~d~--~~~l~e~~RvLKpGG~~~i-~df~~p~~~~~~~~~~-------~y~~~iiP~~g~~~~~~~--~ 210 (265) T Consensus 141 ~~flGSsIGNf~~~ea~~fL~~~~~~l~~~d~lLiG~Dl~Kd~~-~l~~AYnD~~GvTa~FnlN~L~~iNr~Lg~dF~~~ 219 (301) T TIGR03438 141 GFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLVKDPA-VLEAAYNDAAGVTAAFNLNLLRRLNRELGGDFDPD 219 (301) T ss_pred EEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHH-HHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHH T ss_conf 99707544789989999999999997199984899404456989-99987329644247899979999999847785765 Q ss_pred HHHHHH---------------------------------HHHH----HCCCHHHHHHHHHHCCCCEEEEEE Q ss_conf 865789---------------------------------9999----689989999999975995379998 Q gi|254780624|r 211 PYQYLI---------------------------------ESIR----RFPNQQDFAAVISAAGFSNVSFTN 244 (265) Q Consensus 211 ~Y~yL~---------------------------------~Si~----~f~~~~el~~~l~~aGF~~v~~~~ 244 (265) T Consensus 220 ~f~h~a~yn~~~~riem~L~s~~~q~V~i~~~~~~f~~GE~I~tE~S~Ky~~~~~~~l~~~aG~~~~~~W~ 290 (301) T TIGR03438 220 AFRHRAFYNEERSRIEMHLVSRRDQTVRLAGLTVRFAAGETIHTENSYKFSLERFAALAAAAGLRPEQVWT 290 (301) T ss_pred HCEEEEEECCCCCEEEEEEEECCCEEEEECCEEEEECCCCEEEEEEEECCCHHHHHHHHHHCCCCEEEEEE T ss_conf 56799998687787999998168559998997888449898999974087999999999987994468898 |
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >KOG2899 consensus | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.1e-08 Score=73.20 Aligned_cols=158 Identities=22% Similarity=0.261 Sum_probs=95.7 Q ss_pred HHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCC---------------------- Q ss_conf 2064467997798602335577777664138863278721332222111100000112---------------------- Q gi|254780624|r 63 NLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENL---------------------- 120 (265) Q Consensus 63 ~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~---------------------- 120 (265) T Consensus 51 ~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r-~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~ 129 (288) T KOG2899 51 VLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPR-RILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQ 129 (288) T ss_pred HCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 135422476205750677546589999860643-3467615689999999735660101033457875433544454101 Q ss_pred ------------CCCCCCCCCC-----CCCCCCCCCCCCCCEEEEEEC-----CCHH--HHHHHCCCCHHCCCCCEEEEE Q ss_conf ------------2222222222-----333457554467403664201-----3213--443201210004852117763 Q gi|254780624|r 121 ------------QDCITFIEAN-----AETLPFEANSFDACTLAFGIR-----NMPH--ITLVLQEIYRILKCGGRLLVL 176 (265) Q Consensus 121 ------------~~~i~~~~~d-----a~~lp~~d~sfD~V~~sf~l~-----~~~d--~~~~l~e~~RvLKpGG~~~i~ 176 (265) T Consensus 130 ~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlc-LSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvv- 207 (288) T KOG2899 130 RNEADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILC-LSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVV- 207 (288) T ss_pred CCCCCCCCCCCCCCCHHCCCCCEEEECCHHHHHCCCCCCEEEE-EEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEE- T ss_conf 2446651003677201013233798600455505654227999-77334676456457899999999986086857997- Q ss_pred ECCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC--CCCEEEEE Q ss_conf 05544551011234565311133210254288768657899999689989999999975--99537999 Q gi|254780624|r 177 EFSEVQGPVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAA--GFSNVSFT 243 (265) Q Consensus 177 df~~p~~~~~~~~~~~y~~~iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~a--GF~~v~~~ 243 (265) T Consensus 208 E---PQp------WksY~kaa-----r~~e~~~~ny~------~i~lkp~~f~~~l~q~~vgle~~e~~ 256 (288) T KOG2899 208 E---PQP------WKSYKKAA-----RRSEKLAANYF------KIFLKPEDFEDWLNQIVVGLESVEDL 256 (288) T ss_pred C---CCC------HHHHHHHH-----HHHHHHHCCCC------CEECCHHHHHHHHHHHHHHEEEECCC T ss_conf 5---886------17799999-----99998605840------10328889876542023323210010 |
|
| >pfam06080 DUF938 Protein of unknown function (DUF938) | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.9e-07 Score=68.12 Aligned_cols=170 Identities=20% Similarity=0.206 Sum_probs=100.4 Q ss_pred HHHHHHCCCCC-CCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCC-CCCCCCCCCCCC Q ss_conf 99852064467-9977986023355777776641388632787213322221111000001122222-222222333457 Q gi|254780624|r 59 AMVTNLNPRKS-KDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCI-TFIEANAETLPF 136 (265) Q Consensus 59 ~~i~~l~~~~~-~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i-~~~~~da~~lp~ 136 (265) T Consensus 13 pIl~vL~~~l~~~~~~VLEIaSGTGQHav~fA~~lP~-l~WqPSD~~~~~~~sI~aw~~~~~l~-Nl~~P~~LDv~~~~w 90 (201) T pfam06080 13 PILSVLQSYFAKTTERVLEIASGTGQHAVFFAPLLPN-LTWQPSDPDPNLRGSIAAWADQQGLR-NLRPPLHLDVTRPPW 90 (201) T ss_pred HHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCC-CEEECCCCCHHHHHHHHHHHHHCCCC-CCCCCEEEECCCCCC T ss_conf 9999999982747885799768726999999987899-88515888877899999998743777-668873763278998 Q ss_pred -----CCCCCCCCEEEEEECCC--HHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHH---HHHHHHHHHCHHHHHHHHHC Q ss_conf -----55446740366420132--134432012100048521177630554455101---12345653111332102542 Q gi|254780624|r 137 -----EANSFDACTLAFGIRNM--PHITLVLQEIYRILKCGGRLLVLEFSEVQGPVF---KKIYDMWSFKVIPQLGRFIA 206 (265) Q Consensus 137 -----~d~sfD~V~~sf~l~~~--~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~---~~~~~~y~~~iiP~~g~~~~ 206 (265) T Consensus 91 ~~~~~~~~~~dai~~iN~lHI~pw~~~~~lf~ga~~~L~~gG~l~lYGPF~~~G~~ts~SN~~FD~~Lr~---------- 160 (201) T pfam06080 91 PVEAPAPASYDAIFSINMIHISPWSCVEGLFRGAGRLLPPGGVLYIYGPYNQDGELTSDSNRDFDRSLRQ---------- 160 (201) T ss_pred CCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEECCCHHHHHHHHHHH---------- T ss_conf 7555667660023300257737899999999999998515882687465025997688258999999985---------- Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCE Q ss_conf 8876865789999968998999999997599537999855664 Q gi|254780624|r 207 GDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNYTNGV 249 (265) Q Consensus 207 ~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~~~~Gi 249 (265) T Consensus 161 ~dp~-~G-----i---RD~e~v~~lA~~~GL~l~~~~~MPANN 194 (201) T pfam06080 161 RDPE-WG-----I---RDIEDVIALAAAQGLQLVKDVDMPANN 194 (201) T ss_pred CCCC-CC-----C---CCHHHHHHHHHHCCCCCCCCCCCCCCC T ss_conf 0963-37-----8---389999999998799768665069988 |
This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown. |
| >pfam07942 N2227 N2227-like protein | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.3e-06 Score=62.82 Aligned_cols=159 Identities=19% Similarity=0.240 Sum_probs=99.5 Q ss_pred CCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC-------CC----H---------------------- Q ss_conf 79977986023355777776641388632787213322221111-------00----0---------------------- Q gi|254780624|r 69 SKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGR-------DR----A---------------------- 115 (265) Q Consensus 69 ~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~-------~r----~---------------------- 115 (265) T Consensus 56 ~~~~~VLVPGaGLGRLa~Eia~~G---~~~~gNE~S~~Mllas~fiLn~~~~~~~~~i~Pfi~~~Sn~~~~~dqlr~v~i 132 (268) T pfam07942 56 RSKIRILVPGAGLGRLAYELATLG---YQVQGNEFSYFMLLCSNFILNYCKEENQITIYPFIHSFSNQLTRDDQLRPVQI 132 (268) T ss_pred CCCCEEEECCCCCHHHHHHHHHCC---CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHCEEEEEC T ss_conf 778289976988037899987256---46887212199999999998525877828996325366687898897555765 Q ss_pred ------HCCCCCCCCCCCCCCCCCC-CCCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHH Q ss_conf ------0011222222222223334-575544674036642013213443201210004852117763055445510112 Q gi|254780624|r 116 ------FKENLQDCITFIEANAETL-PFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKK 188 (265) Q Consensus 116 ------~~~~~~~~i~~~~~da~~l-p~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~ 188 (265) T Consensus 133 PDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN----------~GP 202 (268) T pfam07942 133 PDVHPLSELGPRGNFSMCAGDFLEVYGEDANSYDVVVTCFFIDTAHNVLEYIDTIEKILKPGGHWIN----------LGP 202 (268) T ss_pred CCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCEEEEEEEEECHHHHHHHHHHHHHHHCCCCEEEE----------CCC T ss_conf 8868101479998414870035898388878226899998766468899999999998366988996----------467 Q ss_pred HHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEEC-CC-----------C--EEEEEE Q ss_conf 345653111332102542887686578999996899899999999759953799985-56-----------6--499999 Q gi|254780624|r 189 IYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNY-TN-----------G--VVALHS 254 (265) Q Consensus 189 ~~~~y~~~iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~~-~~-----------G--i~~i~~ 254 (265) T Consensus 203 Llyh~~----~~------~~-------~~siE--Ls~eEi~~l~~~~GF~~~~~~~~i~~~Y~~d~~Sm~q~~Y~~~f~v 263 (268) T pfam07942 203 LLYHFE----PL------PD-------EMSIE--LSLEDIKRLATKRGFKDEKEETGILNGYTTNYESMMQGYYGCVFWV 263 (268) T ss_pred CCCCCC----CC------CC-------CCCEE--CCHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHCCCCCEEEE T ss_conf 012457----77------88-------76000--6899999999856977998883024677579889823456718999 Q ss_pred EEEEC Q ss_conf 98116 Q gi|254780624|r 255 GWKCE 259 (265) Q Consensus 255 g~Kp~ 259 (265) T Consensus 264 a~Kp~ 268 (268) T pfam07942 264 ARKPP 268 (268) T ss_pred EECCC T ss_conf 96899 |
This family features sequences that are similar to a region of hypothetical yeast gene product N2227. This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions. |
| >pfam01234 NNMT_PNMT_TEMT NNMT/PNMT/TEMT family | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.6e-06 Score=62.15 Aligned_cols=156 Identities=15% Similarity=0.241 Sum_probs=90.3 Q ss_pred HHHHHHHCCCCCCCCEEEECCHHHHHHHH-HHHHHCCCCCEEEEECCCCCCCCCCCCCHHCC----CCC----------- Q ss_conf 99985206446799779860233557777-76641388632787213322221111000001----122----------- Q gi|254780624|r 58 EAMVTNLNPRKSKDYRVLDVAGGTGDVAF-RIAEASDNRSQIVVADINNEMLSVGRDRAFKE----NLQ----------- 121 (265) Q Consensus 58 ~~~i~~l~~~~~~~~~iLDiGcGTG~~~~-~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~----~~~----------- 121 (265) T Consensus 44 ~~l~~~f~~g~~kg~~LiDvG~GPtiy~~lsA~~~f---~~I~lsDy~~~Nr~el~kWl~~ep~afDWs~~~~~v~~lEG 120 (261) T pfam01234 44 PNLLQTFGPGGVKGDTLIDIGSGPTIYQLLSACEVF---KEIHLSDYLPQNRDELIKWLKKEPGAFDWSPVLKHICELEG 120 (261) T ss_pred HHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHC---CEEEECCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCC T ss_conf 999998377874666899847894588887677650---71786025576799999997069986666199999986226 Q ss_pred -------------CCC-CCCCCCCCC-CCCC----CCCCCCCEEEEEECCC----HHHHHHHCCCCHHCCCCCEEEEEEC Q ss_conf -------------222-222222333-4575----5446740366420132----1344320121000485211776305 Q gi|254780624|r 122 -------------DCI-TFIEANAET-LPFE----ANSFDACTLAFGIRNM----PHITLVLQEIYRILKCGGRLLVLEF 178 (265) Q Consensus 122 -------------~~i-~~~~~da~~-lp~~----d~sfD~V~~sf~l~~~----~d~~~~l~e~~RvLKpGG~~~i~df 178 (265) T Consensus 121 ~~~~~~e~ee~lR~~Ik~Vl~cDV~~~~pl~~~~~lp~~D~v~S~~cLE~ac~d~~~Y~~av~ni~~LLkpGG~Lil~gv 200 (261) T pfam01234 121 DRECWQEKEEKLRALVKRVLKCDVHQSPPLGAGVQLPPADCVVTIFCLEYACPDLEEYCRALRNLASLLKPGGHLVLGGV 200 (261) T ss_pred CCCCHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCEEEEEEEHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEEE T ss_conf 76415788899998864488765568888888666788558847622556619999999999999864788846999986 Q ss_pred CCCCCCHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEE Q ss_conf 54455101123456531113321025428876865789999968998999999997599537999 Q gi|254780624|r 179 SEVQGPVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFT 243 (265) Q Consensus 179 ~~p~~~~~~~~~~~y~~~iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~ 243 (265) T Consensus 201 l~~t---------~Y~----------v-G~~~-F~~l------~l~ee~v~~Al~~aG~~i~~~~ 238 (261) T pfam01234 201 LEES---------WYM----------F-GEKK-FSCL------YLSKEVVEDALVDAGLDVEALQ 238 (261) T ss_pred CCCC---------EEE----------E-CCEE-CCEE------ECCHHHHHHHHHHCCCEEEEEE T ss_conf 1773---------488----------7-8986-0225------2289999999997797789978 |
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.3e-05 Score=54.70 Aligned_cols=176 Identities=13% Similarity=0.125 Sum_probs=96.1 Q ss_pred CCCCCEEEECCHHHHHHHHHHHHHCC---CCCEEEEECCCCCCCCCCCCCHHCCCC-CCCCCCCCCCCCC----CCCCCC Q ss_conf 67997798602335577777664138---863278721332222111100000112-2222222222333----457554 Q gi|254780624|r 68 KSKDYRVLDVAGGTGDVAFRIAEASD---NRSQIVVADINNEMLSVGRDRAFKENL-QDCITFIEANAET----LPFEAN 139 (265) Q Consensus 68 ~~~~~~iLDiGcGTG~~~~~l~~~~~---~~~~v~giD~s~~Ml~~a~~r~~~~~~-~~~i~~~~~da~~----lp~~d~ 139 (265) T Consensus 74 i~~~~~lVElGsG~~~Kt~~LL~al~~~~~~~~Y~piDIS~~~L~~s~~~l~~~~~~~l~v~~i~gdy~~~~~~l~~~~~ 153 (319) T TIGR03439 74 IPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPEN 153 (319) T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEEEECHHHHHHHCCCCCC T ss_conf 58997699746887245899999998549974288651769999999987424048975588887537876542057544 Q ss_pred -CCCCCEEEE--EECCCHH--HHHHHCCCCH-HCCCCCEEEE-EECCCCCCCHHHHHH-------HHHHHCHHHHHHHHH Q ss_conf -467403664--2013213--4432012100-0485211776-305544551011234-------565311133210254 Q gi|254780624|r 140 -SFDACTLAF--GIRNMPH--ITLVLQEIYR-ILKCGGRLLV-LEFSEVQGPVFKKIY-------DMWSFKVIPQLGRFI 205 (265) Q Consensus 140 -sfD~V~~sf--~l~~~~d--~~~~l~e~~R-vLKpGG~~~i-~df~~p~~~~~~~~~-------~~y~~~iiP~~g~~~ 205 (265) T Consensus 154 ~~~~~l~~flGStIGNf~~~eA~~fL~~~~~~~l~~~d~lLiG~Dl~Kd~-~~l~~AYnD~~GvTa~FnlN~L~riNr~L 232 (319) T TIGR03439 154 RSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGCKDP-DKVLRAYNDPGGVTRRFVLNGLVHANEIL 232 (319) T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCH-HHHHHHHCCCCCCHHHHHHHHHHHHHHHH T ss_conf 67875999616544678979999999999997259887589656677798-99897630885410999985999999984 Q ss_pred CCC---HHHHHHHH--HH----HHH-----------------------------CCCHHHHHHHHHHCCCCEEEEEE Q ss_conf 288---76865789--99----996-----------------------------89989999999975995379998 Q gi|254780624|r 206 AGD---EEPYQYLI--ES----IRR-----------------------------FPNQQDFAAVISAAGFSNVSFTN 244 (265) Q Consensus 206 ~~~---~~~Y~yL~--~S----i~~-----------------------------f~~~~el~~~l~~aGF~~v~~~~ 244 (265) T Consensus 233 g~d~F~~~~f~h~a~yn~~~~riem~L~s~~~v~i~~~~~~f~~GE~I~tE~S~Kyt~~~~~~l~~~aG~~~~~~W~ 309 (319) T TIGR03439 233 GSEAFREEDWEFLGEWDEELGRHEAFYIPKKDVSIGLEGVVIRKGEKIRFECSGKYDKDEREKLCQSAGLKVVDVWT 309 (319) T ss_pred CCCCCCHHHCEEEEEECCCCCCCHHEEECCCEEEECCCCEEECCCCEEEEEEEECCCHHHHHHHHHHCCCEEEEEEE T ss_conf 73457653067999984775813112770654897057279779998999975188999999999987990468896 |
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >TIGR00417 speE spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase ( |
|---|
Probab=98.17 E-value=1.7e-06 Score=62.08 Aligned_cols=157 Identities=14% Similarity=0.223 Sum_probs=107.5 Q ss_pred HHHHHHHCC-CCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHC----CCCCCCCCCCCCCCC Q ss_conf 999852064-467997798602335577777664138863278721332222111100000----112222222222233 Q gi|254780624|r 58 EAMVTNLNP-RKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFK----ENLQDCITFIEANAE 132 (265) Q Consensus 58 ~~~i~~l~~-~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~----~~~~~~i~~~~~da~ 132 (265) T Consensus 62 hEMi~HvpL~~H~NPk~VLvIGGGDGG~lREV~KH~-sVE~~~lVdID~~VI~~srkyLP~~~~g~~dderv~~~i~DG~ 140 (284) T TIGR00417 62 HEMIAHVPLFAHPNPKKVLVIGGGDGGVLREVVKHK-SVEKATLVDIDEKVIELSRKYLPKLAAGSFDDERVDLAIDDGF 140 (284) T ss_pred HHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEEECC-CCCEEEEEECCHHHHHHHHHHCHHHHCCCCCCCEEEEEECCCH T ss_conf 789987565368988547899638884687887559-8167999972747899988826121056658880358982517 Q ss_pred C-CCCC-----CCCCCCCEEEEEECCCHHH---------HHHHCCCCHHCCCCCEEEEEECCC-CCCCHHHHHHHHHHHC Q ss_conf 3-4575-----5446740366420132134---------432012100048521177630554-4551011234565311 Q gi|254780624|r 133 T-LPFE-----ANSFDACTLAFGIRNMPHI---------TLVLQEIYRILKCGGRLLVLEFSE-VQGPVFKKIYDMWSFK 196 (265) Q Consensus 133 ~-lp~~-----d~sfD~V~~sf~l~~~~d~---------~~~l~e~~RvLKpGG~~~i~df~~-p~~~~~~~~~~~y~~~ 196 (265) T Consensus 141 ~fl~~~Gasdv~~~fDVIIv-D----stDPvGPa~~LF~~~Fy~~~~~aL~~~Gv~v~----Qss~s~~~~~~~------ 205 (284) T TIGR00417 141 KFLRDTGASDVEKKFDVIIV-D----STDPVGPAETLFTKEFYELLKKALNEDGVIVA----QSSESPWLQLEL------ 205 (284) T ss_pred HHHHHCCCCCCCCCCCEEEE-E----CCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEE----ECCCCCCCCHHH------ T ss_conf 98976152222121447997-2----77895655410217999999985299988998----027884327488------ Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEE-----ECCCCEEEEEEEEEE Q ss_conf 13321025428876865789999968998999999997599537999-----855664999999811 Q gi|254780624|r 197 VIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFT-----NYTNGVVALHSGWKC 258 (265) Q Consensus 197 iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~-----~~~~Gi~~i~~g~Kp 258 (265) T Consensus 206 ----------------------------~~d~~r~~~~~~F~~~~~y~~~iPTYp~G~~~F~~~s~~ 244 (284) T TIGR00417 206 ----------------------------IKDLKRKVKEVPFPITEYYTAAIPTYPSGLWSFIIASKN 244 (284) T ss_pred ----------------------------HHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHCCCC T ss_conf ----------------------------887888775268975304664078650235453220242 |
5.1.16" />), spermine synthase ( |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=4.1e-05 Score=53.14 Aligned_cols=149 Identities=11% Similarity=0.189 Sum_probs=92.3 Q ss_pred CCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCC----CCCCCCCCCHHCCCCCCCCCCCCCCCCCCC-C--CCC Q ss_conf 467997798602335577777664138863278721332----222111100000112222222222233345-7--554 Q gi|254780624|r 67 RKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINN----EMLSVGRDRAFKENLQDCITFIEANAETLP-F--EAN 139 (265) Q Consensus 67 ~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~----~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp-~--~d~ 139 (265) T Consensus 132 ~Ik~GskVLYLGAasGTTVSHVSDIVG~~G~VYAVEfSpr~~RdLl~lA~~R-------~NIvPIleDAr~P~kYr~lV~ 204 (296) T PTZ00146 132 PIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLVEMAKRR-------TNIVPIIEDARYPQKYRMLVP 204 (296) T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHCC-------CCCEEEECCCCCHHHHHHHCC T ss_conf 4379998998514679865566650178861999970646688999997227-------983357777897467554245 Q ss_pred CCCCCEEEEEECCCHHHHH---HHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHH Q ss_conf 4674036642013213443---2012100048521177630554455101123456531113321025428876865789 Q gi|254780624|r 140 SFDACTLAFGIRNMPHITL---VLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLI 216 (265) Q Consensus 140 sfD~V~~sf~l~~~~d~~~---~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~iiP~~g~~~~~~~~~Y~yL~ 216 (265) T Consensus 205 ~VDvIf~-----DVAQpdQarI~~~Na~~FLK~gG~~~i~I----KArsID-----------------st~~p~~----- 253 (296) T PTZ00146 205 MVDCIFA-----DVAQPDQARIVALNAQHFLKNGGHFVISI----KANCID-----------------STADPEV----- 253 (296) T ss_pred CCCEEEE-----CCCCHHHHHHHHHHHHHHHHCCCEEEEEE----ECCCCC-----------------CCCCHHH----- T ss_conf 5558996-----17876589999999998531698899999----726632-----------------5679899----- Q ss_pred HHHHHCCCHHHHHHHHHHCCCCEEEEEEC---CCCEEEEEEEEEECC Q ss_conf 99996899899999999759953799985---566499999981164 Q gi|254780624|r 217 ESIRRFPNQQDFAAVISAAGFSNVSFTNY---TNGVVALHSGWKCEN 260 (265) Q Consensus 217 ~Si~~f~~~~el~~~l~~aGF~~v~~~~~---~~Gi~~i~~g~Kp~~ 260 (265) T Consensus 254 ----VF--~~E-v~kL~~~~f~~~e~v~LePy~rdHa~vvg~Yr~~~ 293 (296) T PTZ00146 254 ----VF--ASE-VQKLKKEGLKPKEQLTLEPFERDHAVVIGVYRVVK 293 (296) T ss_pred ----HH--HHH-HHHHHHCCCCEEEEEECCCCCCCCEEEEEEECCCC T ss_conf ----99--999-99998728963688704777788289999855776 |
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=4.4e-05 Score=52.93 Aligned_cols=136 Identities=13% Similarity=0.192 Sum_probs=85.6 Q ss_pred CCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCC----CCCCCCCCC Q ss_conf 6799779860233557777766413886327872133222211110000011222222222223334----575544674 Q gi|254780624|r 68 KSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETL----PFEANSFDA 143 (265) Q Consensus 68 ~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~l----p~~d~sfD~ 143 (265) T Consensus 70 i~~gskVLYLGAasGTTVSHvsDiV~-~G~VyAVE~spr~~RdL~~-l--a~~R~NivPIl~DAr~P~~Y~~~v-~~VD~ 144 (226) T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVE-EGRVYAVEFAPRVMRELLL-V--AEERKNIIPILGDARKPEEYAHLV-EKVDV 144 (226) T ss_pred CCCCCEEEEECCCCCCCHHHHHHHCC-CCEEEEEEECCHHHHHHHH-H--HHHCCCCEEEECCCCCHHHHHHHC-CCCCE T ss_conf 58998799954777984888987517-9649999827077899999-9--850899625754678845644205-65658 Q ss_pred CEEEEEECCCHHHH---HHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHH Q ss_conf 03664201321344---320121000485211776305544551011234565311133210254288768657899999 Q gi|254780624|r 144 CTLAFGIRNMPHIT---LVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIR 220 (265) Q Consensus 144 V~~sf~l~~~~d~~---~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~iiP~~g~~~~~~~~~Y~yL~~Si~ 220 (265) T Consensus 145 i~q-----DvAQ~dQa~I~~~Na~~FLk~gG~~~l~i----KA~Sid-----------------~t~~p~~--------- 189 (226) T PRK04266 145 IYQ-----DVAQPNQAEIAADNADIFLKPGGYLMLAI----KARSID-----------------VTKDPKE--------- 189 (226) T ss_pred EEE-----ECCCHHHHHHHHHHHHHHHHCCCEEEEEE----EEEEEE-----------------CCCCHHH--------- T ss_conf 996-----06774289999999998601598899999----742356-----------------4689899--------- Q ss_pred HCCCHHHHHHHHHHCCCCEEEEEECC Q ss_conf 68998999999997599537999855 Q gi|254780624|r 221 RFPNQQDFAAVISAAGFSNVSFTNYT 246 (265) Q Consensus 221 ~f~~~~el~~~l~~aGF~~v~~~~~~ 246 (265) T Consensus 190 vf---~~~~~~L~~~~~~~~e~i~L~ 212 (226) T PRK04266 190 IF---KEEIKKLEEGGFEILEVVDLE 212 (226) T ss_pred HH---HHHHHHHHHCCCCEEEEEECC T ss_conf 99---999999987699668998157 |
|
| >pfam11968 DUF3321 Protein of unknown function (DUF3321) | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00014 Score=49.74 Aligned_cols=123 Identities=21% Similarity=0.307 Sum_probs=80.0 Q ss_pred CCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCC---CCCCCCCCEEE Q ss_conf 977986023355777776641388632787213322221111000001122222222222333457---55446740366 Q gi|254780624|r 71 DYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPF---EANSFDACTLA 147 (265) Q Consensus 71 ~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~---~d~sfD~V~~s 147 (265) T Consensus 53 ~lr~LEVGALst~N~--~S~-~-~~~dv~rIDLnSq~--------------p~I--~qqDFmerPlP~~e~e~F~iISlS 112 (220) T pfam11968 53 KLRALEVGALSTKNA--CSK-S-GLFDVTRIDLNSQE--------------PGI--LQQDFMERPLPKDESEKFDIISLS 112 (220) T ss_pred CCEEEEECCCCCCCH--HCC-C-CEEEEEEEECCCCC--------------CCC--HHHHHHHCCCCCCCCCCCCEEEEE T ss_conf 631775545564212--225-6-74777885258999--------------871--443244077888831141358887 Q ss_pred EEECCCHHH---HHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHCCC Q ss_conf 420132134---43201210004852117763055445510112345653111332102542887686578999996899 Q gi|254780624|r 148 FGIRNMPHI---TLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPN 224 (265) Q Consensus 148 f~l~~~~d~---~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~iiP~~g~~~~~~~~~Y~yL~~Si~~f~~ 224 (265) T Consensus 113 LVLNfVP~~~~RGeML~r~~~fL~~~~~~~----------------~~~lFlVLPlp-C-v-~N-----------SRY~~ 162 (220) T pfam11968 113 LVLNFVPDPADRGEMLKRTTKFLRPPGPGS----------------PPSLFLVLPLP-C-V-TN-----------SRYMD 162 (220) T ss_pred EEEECCCCHHHHHHHHHHHHHHHCCCCCCC----------------CCEEEEEEEHH-H-H-HC-----------CCCCC T ss_conf 777416987888699999999717997666----------------63268873245-6-4-04-----------40019 Q ss_pred HHHHHHHHHHCCCCEEEEE Q ss_conf 8999999997599537999 Q gi|254780624|r 225 QQDFAAVISAAGFSNVSFT 243 (265) Q Consensus 225 ~~el~~~l~~aGF~~v~~~ 243 (265) T Consensus 163 ~~~l~~im~slGf~~~~~k 181 (220) T pfam11968 163 EERLQAIMSSLGFVLVKSK 181 (220) T ss_pred HHHHHHHHHHCCCEEEEEE T ss_conf 9999999996795588764 |
This family is conserved in fungi and is annotated as being a nucleolar protein. |
| >pfam03059 NAS Nicotianamine synthase protein | Back alignment and domain information |
|---|
Probab=97.63 E-value=5.9e-05 Score=52.11 Aligned_cols=150 Identities=15% Similarity=0.144 Sum_probs=103.8 Q ss_pred CCCEEEECCHHHHHHH-HHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCC-CCCCCCCCCCCCCCCCCCCCCCCCCEEE Q ss_conf 9977986023355777-7766413886327872133222211110000011-2222222222233345755446740366 Q gi|254780624|r 70 KDYRVLDVAGGTGDVA-FRIAEASDNRSQIVVADINNEMLSVGRDRAFKEN-LQDCITFIEANAETLPFEANSFDACTLA 147 (265) Q Consensus 70 ~~~~iLDiGcGTG~~~-~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~-~~~~i~~~~~da~~lp~~d~sfD~V~~s 147 (265) T Consensus 121 ~p~~vAFIGSGPLPLTsivLa~~h~~~~~~~niD~d~~A~~~A~~lv~~~g~ls~~m~f~t~d~~~~~~~l~~~DvV~lA 200 (277) T pfam03059 121 VPSRIAFIGSGPLPLTSIVLASYHLPDTSFDNYDIDGLANDRASKLVSSDPDLSSRMSFHTADVLDVTTELKAYDVVFLA 200 (277) T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHCCCHHCCEEEEECCCCCCCCCCCCCCEEEEH T ss_conf 97448996378861389999885088731433127889999999999865530047289952644444444547689872 Q ss_pred EEEC--CCHHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHCCCH Q ss_conf 4201--32134432012100048521177630554455101123456531113321025428876865789999968998 Q gi|254780624|r 148 FGIR--NMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQ 225 (265) Q Consensus 148 f~l~--~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~ 225 (265) T Consensus 201 -ALVGm~~e~K~~I~~hL~k~m~~Ga~l~~R-----sa~GlR~~L--Y-----p~----------------------vd~ 245 (277) T pfam03059 201 -ALVGMDKEEKAKVIDHLGKHMAPGALLVLR-----SAHGARAFL--Y-----PV----------------------VDP 245 (277) T ss_pred -HHCCCCHHHHHHHHHHHHHHCCCCCEEEEE-----CCHHHHHHC--C-----CC----------------------CCH T ss_conf -113543335999999999745899679996-----112178762--8-----87----------------------896 Q ss_pred HHHHHHHHHCCCCEEEEEECCCC-EEEEEEEEEECC Q ss_conf 99999999759953799985566-499999981164 Q gi|254780624|r 226 QDFAAVISAAGFSNVSFTNYTNG-VVALHSGWKCEN 260 (265) Q Consensus 226 ~el~~~l~~aGF~~v~~~~~~~G-i~~i~~g~Kp~~ 260 (265) T Consensus 246 ~~------~~GFe~l~~~hP~~~ViNSvI~~rk~~~ 275 (277) T pfam03059 246 CD------LRGFEVLSVYHPTDEVINSVIVARKKIV 275 (277) T ss_pred HH------CCCCEEEEEECCCCCCEEEEEEEECCCC T ss_conf 67------3870799998899984113899833777 |
Nicotianamine synthase EC:2.5.1.43 catalyses the trimerisation of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is great |
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00021 Score=48.58 Aligned_cols=146 Identities=17% Similarity=0.173 Sum_probs=87.8 Q ss_pred HHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC----C-CCHHCCCCCCCCCCCCCCCCCCC Q ss_conf 852064467997798602335577777664138863278721332222111----1-00000112222222222233345 Q gi|254780624|r 61 VTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVG----R-DRAFKENLQDCITFIEANAETLP 135 (265) Q Consensus 61 i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a----~-~r~~~~~~~~~i~~~~~da~~lp 135 (265) T Consensus 41 L~FaGlkpg--~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~ 118 (238) T COG4798 41 LAFAGLKPG--ATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG 118 (238) T ss_pred EEEECCCCC--CEEEEEECCCCCHHHHHCHHCCCCEEEEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 677526899--879998348850744411002875059885643432510140366666664222310455277500458 Q ss_pred CCCCCCCCCEE-E-E---EECCCH--HHHHHHCCCCHHCCCCCEEEEEECCC-CCCCHHHHHHHHHHHCHHHHHHHHHCC Q ss_conf 75544674036-6-4---201321--34432012100048521177630554-455101123456531113321025428 Q gi|254780624|r 136 FEANSFDACTL-A-F---GIRNMP--HITLVLQEIYRILKCGGRLLVLEFSE-VQGPVFKKIYDMWSFKVIPQLGRFIAG 207 (265) Q Consensus 136 ~~d~sfD~V~~-s-f---~l~~~~--d~~~~l~e~~RvLKpGG~~~i~df~~-p~~~~~~~~~~~y~~~iiP~~g~~~~~ 207 (265) T Consensus 119 -~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~---------------------~ 176 (238) T COG4798 119 -APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGL---------------------S 176 (238) T ss_pred -CCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC---------------------C T ss_conf -997654133211110011045685249999999998538884799874024689880---------------------0 Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHCCCC Q ss_conf 8768657899999689989999999975995 Q gi|254780624|r 208 DEEPYQYLIESIRRFPNQQDFAAVISAAGFS 238 (265) Q Consensus 208 ~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~ 238 (265) T Consensus 177 dt~--------~~~ri~~a~V~a~veaaGFk 199 (238) T COG4798 177 DTI--------TLHRIDPAVVIAEVEAAGFK 199 (238) T ss_pred HHH--------HHCCCCHHHHHHHHHHHCCE T ss_conf 224--------43365758999999851325 |
|
| >pfam03492 Methyltransf_7 SAM dependent carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0032 Score=40.90 Aligned_cols=172 Identities=12% Similarity=0.115 Sum_probs=81.1 Q ss_pred CCCCCEEEECCHHHHHHHHHHHH--------HC-------CCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCC--- Q ss_conf 67997798602335577777664--------13-------8863278721332222111100000112222222222--- Q gi|254780624|r 68 KSKDYRVLDVAGGTGDVAFRIAE--------AS-------DNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEA--- 129 (265) Q Consensus 68 ~~~~~~iLDiGcGTG~~~~~l~~--------~~-------~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~--- 129 (265) T Consensus 14 ~p~~~~IADlGCSsGpNtl~~vs~ii~~i~~~~~~~~~~~~pE~qvf~NDLP~NDFNtlF~sLp~~~~~~~~~f~~gvpG 93 (331) T pfam03492 14 FPNSIKIADLGCSSGPNTFLAVSNIIDTVEKKYQKENILEPPEFQVFFNDLPSNDFNTLFKLLPPFQKKKRSYFVSGVPG 93 (331) T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHCCHHHCCCCCEEEEECCC T ss_conf 99855999817999752899999999999999864179999738998678998627888740840113788769996586 Q ss_pred CCCCCCCCCCCCCCCEEEEEECCCHHHHHHH-----------------------CCCC----------------HHCCCC Q ss_conf 2333457554467403664201321344320-----------------------1210----------------004852 Q gi|254780624|r 130 NAETLPFEANSFDACTLAFGIRNMPHITLVL-----------------------QEIY----------------RILKCG 170 (265) Q Consensus 130 da~~lp~~d~sfD~V~~sf~l~~~~d~~~~l-----------------------~e~~----------------RvLKpG 170 (265) T Consensus 94 SFy~RLfP~~Slh~~~Ss~slHWLS~vP~~l~~~~~~~~Nkg~I~i~~~s~~~V~~AY~~Qf~~D~~~FL~~Ra~Elv~G 173 (331) T pfam03492 94 SFYGRLFPRNSLHFVHSSYSLHWLSQVPKGLEDKESPAWNKGNIYISGASPEEVYKAYLDQFKKDFSLFLRARAEELVSG 173 (331) T ss_pred CCCCCCCCCCCEEEEEEHHHHHHHHHCCHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 43255578764588753225677640870010678755678856971699889999999999999999999889985468 Q ss_pred CEEEEEECCCCCCCHH----HHHHHHHHHCHHHHHHHHHCCCHHHHH--HHHHHHHHCCCHHHHHHHHHHCCCCEEEEE Q ss_conf 1177630554455101----123456531113321025428876865--789999968998999999997599537999 Q gi|254780624|r 171 GRLLVLEFSEVQGPVF----KKIYDMWSFKVIPQLGRFIAGDEEPYQ--YLIESIRRFPNQQDFAAVISAAGFSNVSFT 243 (265) Q Consensus 171 G~~~i~df~~p~~~~~----~~~~~~y~~~iiP~~g~~~~~~~~~Y~--yL~~Si~~f~~~~el~~~l~~aGF~~v~~~ 243 (265) T Consensus 174 G~mvl~~~Gr~~~d~~~~~~~~~~~ll~~aL~dlv~eGlI-~eekldsFNiP---~Y~ps~eEv~~~Ie~eGsF~I~~l 248 (331) T pfam03492 174 GLMVLTFLGRPSVDPSETECGIFWDLLGDALNDLVSEGLI-EEEKLDSFNIP---IYAPSPEEVKEIIEKEGSFTIERL 248 (331) T ss_pred CEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC-CHHHHHHCCCC---CCCCCHHHHHHHHHHCCCEEEEEE T ss_conf 6599996056899866566443999999999999985996-79998324887---607999999999710697565677 |
This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine. |
| >PRK11727 putative SAM-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00025 Score=48.06 Aligned_cols=172 Identities=16% Similarity=0.188 Sum_probs=86.7 Q ss_pred CCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCC-CCCCCCCCCCCC-CCC----CCCCCCCC Q ss_conf 679977986023355777776641388632787213322221111000001-122222222222-333----45755446 Q gi|254780624|r 68 KSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKE-NLQDCITFIEAN-AET----LPFEANSF 141 (265) Q Consensus 68 ~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~-~~~~~i~~~~~d-a~~----lp~~d~sf 141 (265) T Consensus 115 ~g~~v~gLDIGtGAncIYPLLG~~~-ygW~fvgtDId~~sl~~A~~~v~~N~~L~~~I~lr~q~~~~~If~gii~~~e~f 193 (326) T PRK11727 115 KGANVRVLDIGVGANCIYPIIGVQE-YGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERF 193 (326) T ss_pred CCCCCEEEECCCCCCEEEEECCCEE-CCCEEEEECCCHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHCCCCCCCCEE T ss_conf 8887236750567431121014300-176379961798999999999984820105279996278676532458876657 Q ss_pred CCCEEEEEECCCHHHHHHHCCCCHHCCC------CCEEEEEECCCCCCCH---------HHHHHH---HHHHCHHHHHHH Q ss_conf 7403664201321344320121000485------2117763055445510---------112345---653111332102 Q gi|254780624|r 142 DACTLAFGIRNMPHITLVLQEIYRILKC------GGRLLVLEFSEVQGPV---------FKKIYD---MWSFKVIPQLGR 203 (265) Q Consensus 142 D~V~~sf~l~~~~d~~~~l~e~~RvLKp------GG~~~i~df~~p~~~~---------~~~~~~---~y~~~iiP~~g~ 203 (265) T Consensus 194 dftmCNPPF--~~S~eea~~gt~Rk~~nl~~~~~~~~~~~lnfgG~~~EL~c~GGE~~FI~rMI~ES~~~~~~v-~WfTs 270 (326) T PRK11727 194 DLTLCNPPF--HASAAEARAGSERKLRNLGKNKPKAAKPVLNFGGQNAELWCEGGEVAFIKKMIEESVAFAKQV-LWFTS 270 (326) T ss_pred EEEECCCCC--CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCC-EEEEE T ss_conf 778518987--678999974204544320336788887642457764247846838999999999999873074-89830 Q ss_pred HHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCC-EEEEEEEEE Q ss_conf 542887686578999996899899999999759953799985566-499999981 Q gi|254780624|r 204 FIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNYTNG-VVALHSGWK 257 (265) Q Consensus 204 ~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~~~~G-i~~i~~g~K 257 (265) T Consensus 271 lvgKk--------------snL~~l~~~L~~~~~~~~~~~em~QG~k~sR~iAWs 311 (326) T PRK11727 271 LVSKK--------------ENLPPLYRALKKVGAVEVKTIEMAQGQKQSRFIAWT 311 (326) T ss_pred CCCCC--------------CCHHHHHHHHHHCCCCEEEEEEEECCCCEEEEEEEE T ss_conf 13562--------------039999999997699779999820687102899985 |
|
| >KOG2798 consensus | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0024 Score=41.68 Aligned_cols=144 Identities=23% Similarity=0.301 Sum_probs=79.8 Q ss_pred CCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC-------CCCCCH---------------------H------ Q ss_conf 977986023355777776641388632787213322221-------111000---------------------0------ Q gi|254780624|r 71 DYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLS-------VGRDRA---------------------F------ 116 (265) Q Consensus 71 ~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~-------~a~~r~---------------------~------ 116 (265) T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~---~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD 227 (369) T KOG2798 151 KIRILVPGAGLGRLAYDLACLGF---KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPD 227 (369) T ss_pred CCEEEECCCCCHHHHHHHHHHCC---CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCC T ss_conf 86288148871167899887433---334307899999999999875426784799742120145553013436656765 Q ss_pred -----CCCCCCCCCCCCCCCCCC---CCCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHH Q ss_conf -----011222222222223334---575544674036642013213443201210004852117763055445510112 Q gi|254780624|r 117 -----KENLQDCITFIEANAETL---PFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKK 188 (265) Q Consensus 117 -----~~~~~~~i~~~~~da~~l---p~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~ 188 (265) T Consensus 228 ~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNlG------PL--- 298 (369) T KOG2798 228 IHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINLG------PL--- 298 (369) T ss_pred CCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEEEEECHHHHHHHHHHHHHHCCCCCEEEECC------CE--- T ss_conf 564434789987422156505772676777755548999875243779999999998515783899325------62--- Q ss_pred HHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEE Q ss_conf 3456531113321025428876865789999968998999999997599537999 Q gi|254780624|r 189 IYDMWSFKVIPQLGRFIAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFT 243 (265) Q Consensus 189 ~~~~y~~~iiP~~g~~~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~ 243 (265) T Consensus 299 lYHF-~----d~~g~----~~~------~siE--ls~edl~~v~~~~GF~~~ke~ 336 (369) T KOG2798 299 LYHF-E----DTHGV----ENE------MSIE--LSLEDLKRVASHRGFEVEKER 336 (369) T ss_pred EEEC-C----CCCCC----CCC------CCCC--CCHHHHHHHHHHCCCEEEEEE T ss_conf 5513-6----78887----655------3102--469999999984582787740 |
|
| >PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.065 Score=32.52 Aligned_cols=168 Identities=13% Similarity=0.127 Sum_probs=89.5 Q ss_pred HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCC-- Q ss_conf 999852064467997798602335577777664138863278721332222111100000112222222222233345-- Q gi|254780624|r 58 EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLP-- 135 (265) Q Consensus 58 ~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp-- 135 (265) T Consensus 482 ~rl~~~~~~--qr~~~vl~l~~~sll~~~~~l~~~peggv~~~~~~~~~~~rL-~aQl~lLdpL~RP~Ll~~~~~~l~~L 558 (726) T PRK13341 482 DRLWSGITW--QRHDRVLNLANRSLLWALEPLRAVPEGGVTVLCESSDDIVRL-EAQLDLLDPLGRPVLLDAGLLALKYL 558 (726) T ss_pred HHHHCCCCC--CCCCEEEEECCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHH-HHHHHHCCHHCCCCEEECCCHHHHHC T ss_conf 998433665--634359983385126526778618998669983788899999-99987468111971121671146537 Q ss_pred CCCCCCCCCEEEEEECCCHHH--HHHHCCCCHHCCCCCEEEEEECCCCCCCH-HHHHHHHHHHCHHHHHHHHHCCCHHHH Q ss_conf 755446740366420132134--43201210004852117763055445510-112345653111332102542887686 Q gi|254780624|r 136 FEANSFDACTLAFGIRNMPHI--TLVLQEIYRILKCGGRLLVLEFSEVQGPV-FKKIYDMWSFKVIPQLGRFIAGDEEPY 212 (265) Q Consensus 136 ~~d~sfD~V~~sf~l~~~~d~--~~~l~e~~RvLKpGG~~~i~df~~p~~~~-~~~~~~~y~~~iiP~~g~~~~~~~~~Y 212 (265) T Consensus 559 ~~~~~FE~IgGR~~~~~l~~~~~~~~~q~L~~~l~p~g~l~Ll~-S~P~~Gpa~all~~----~---------~~~~~~l 624 (726) T PRK13341 559 PANLQFEWIGGRNGLDDLLYKADEELWQQLTEKLTPNGGLRLLI-SQPEAGPALALLLK----A---------PVEDKLL 624 (726) T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEE-CCCCCCCHHHHHCC----C---------CCHHHHH T ss_conf 98764247833320023422569999999998659986699863-57764807887356----9---------4048999 Q ss_pred HHHHHHHHHC----CCHHHHHHHHHHCCCCEEEEE Q ss_conf 5789999968----998999999997599537999 Q gi|254780624|r 213 QYLIESIRRF----PNQQDFAAVISAAGFSNVSFT 243 (265) Q Consensus 213 ~yL~~Si~~f----~~~~el~~~l~~aGF~~v~~~ 243 (265) T Consensus 625 ~~L~~aEe~wl~~~~~~~~Lqq~le~~gws-l~~e 658 (726) T PRK13341 625 SALLEAEELWLKSQSMPALLQQQLEEAGWS-LGIE 658 (726) T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHCCCC-CEEE T ss_conf 999999999962688859999999974884-5351 |
|
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.078 Score=31.99 Aligned_cols=150 Identities=19% Similarity=0.244 Sum_probs=77.8 Q ss_pred CEEEECCHH--HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE Q ss_conf 779860233--557777766413886327872133222211110000011222222222223334575544674036642 Q gi|254780624|r 72 YRVLDVAGG--TGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFG 149 (265) Q Consensus 72 ~~iLDiGcG--TG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~ 149 (265) T Consensus 1 M~I~IiGlGLiGgSla~alk~~-~~~~~V~g~d~~~~~~~~A~~----~g~id~~----~~~~~i----~~aDlVila~- 66 (275) T PRK08507 1 MKIGIIGLGLMGGSLGLALKEN-KLISCVYGYDHNEEHEKDALD----LGLVDEI----VEFEEI----KECDVIFLAI- 66 (275) T ss_pred CEEEEEECCHHHHHHHHHHHHC-CCCCEEEEEECCHHHHHHHHH----CCCCCCC----CCHHHC----CCCCEEEEEC- T ss_conf 9899990087899999999950-998679999599999999998----6998610----673123----6579899917- Q ss_pred ECCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCHH---HHHHHHHCCCHHHHHHHHHH--HHHCC- Q ss_conf 0132134432012100048521177630554455101123456531113---32102542887686578999--99689- Q gi|254780624|r 150 IRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKIYDMWSFKVI---PQLGRFIAGDEEPYQYLIES--IRRFP- 223 (265) Q Consensus 150 l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~~~~y~~~ii---P~~g~~~~~~~~~Y~yL~~S--i~~f~- 223 (265) T Consensus 67 --Pv~~~~~~l~~l~~-l~~~~i--itDv~SvK~~i~~~~~~~~~~~fVg~HPmAGsE~sG~~~a~~~LF~~~~~il~p~ 141 (275) T PRK08507 67 --PVDAIIEILQKLLD-IKENTT--IIDLGSTKAKIIESIPKSIRKNFIAAHPMTGTEFSGPKAAFKGLYKGAVVVLCDL 141 (275) T ss_pred --CHHHHHHHHHHHHH-CCCCCE--EEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECC T ss_conf --69999999999860-467888--9834312899999998625688443499788875445441077853985999688 Q ss_pred --C----HHHHHHHHHHCCCCEE Q ss_conf --9----8999999997599537 Q gi|254780624|r 224 --N----QQDFAAVISAAGFSNV 240 (265) Q Consensus 224 --~----~~el~~~l~~aGF~~v 240 (265) T Consensus 142 ~~~~~~~~~~~~~l~~~lGa~~~ 164 (275) T PRK08507 142 EKSGEKHQERAKEIFSGIGMKIV 164 (275) T ss_pred CCCCHHHHHHHHHHHHHCCCEEE T ss_conf 88979999999999998199788 |
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.29 Score=28.34 Aligned_cols=171 Identities=15% Similarity=0.249 Sum_probs=95.1 Q ss_pred CCEEEECCHHHHHHHHHHHHHCCC---CCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC-CCCCCCCCCCCEE Q ss_conf 977986023355777776641388---632787213322221111000001122222222222333-4575544674036 Q gi|254780624|r 71 DYRVLDVAGGTGDVAFRIAEASDN---RSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET-LPFEANSFDACTL 146 (265) Q Consensus 71 ~~~iLDiGcGTG~~~~~l~~~~~~---~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~-lp~~d~sfD~V~~ 146 (265) T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl-~ 157 (321) T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRL-F 157 (321) T ss_pred CCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHCCCCCCEEE-E T ss_conf 654897168962889999997521377403554022289999899999986799767631256888875156887289-9 Q ss_pred EE---EECCCH--HHHHHHCCCCHHCCCCCEEEE-EECCCCCCCHHHHHHH-------HHHHCHHHHHHHHHCCCHH--H Q ss_conf 64---201321--344320121000485211776-3055445510112345-------6531113321025428876--8 Q gi|254780624|r 147 AF---GIRNMP--HITLVLQEIYRILKCGGRLLV-LEFSEVQGPVFKKIYD-------MWSFKVIPQLGRFIAGDEE--P 211 (265) Q Consensus 147 sf---~l~~~~--d~~~~l~e~~RvLKpGG~~~i-~df~~p~~~~~~~~~~-------~y~~~iiP~~g~~~~~~~~--~ 211 (265) T Consensus 158 ~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k~Ae-~Le~AYdDp~gVTa~FnlNvLa~lNr~f~~nFD~~d 236 (321) T COG4301 158 VFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLRKPAE-RLEAAYDDPQGVTAEFNLNVLAHLNRVFGGNFDVDD 236 (321) T ss_pred EEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHH-HHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCH T ss_conf 9836533688867899999999842897666998121268788-877741585133899878899998998636777210 Q ss_pred HHHH--HHH----HHHC---------------------------------CCHHHHHHHHHHCCCCEEEEE Q ss_conf 6578--999----9968---------------------------------998999999997599537999 Q gi|254780624|r 212 YQYL--IES----IRRF---------------------------------PNQQDFAAVISAAGFSNVSFT 243 (265) Q Consensus 212 Y~yL--~~S----i~~f---------------------------------~~~~el~~~l~~aGF~~v~~~ 243 (265) T Consensus 237 feh~Avyne~~~~iem~L~a~~~qTVr~g~l~ltv~F~age~iLtE~S~Kfslq~irq~laa~gl~~v~~w 307 (321) T COG4301 237 FEHVAVYNEDEGRIEMYLRAKREQTVRLGALDLTVDFAAGETILTEISRKFSLQAIRQQLAAAGLEPVQKW 307 (321) T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEECCCCCEEEHHHHHHCCHHHHHHHHHHCCCEEEEEH T ss_conf 25576551057789998631770589963755135337776210024450798999999985697473100 |
|
| >KOG2918 consensus | Back alignment and domain information |
|---|
Probab=92.66 E-value=0.31 Score=28.12 Aligned_cols=171 Identities=12% Similarity=0.181 Sum_probs=78.0 Q ss_pred CCCCCEEEECCHHHHHHHHHHHHHC-CCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCC-CCCCCCCCCCCCCCCCCCCE Q ss_conf 6799779860233557777766413-886327872133222211110000011222222-22222333457554467403 Q gi|254780624|r 68 KSKDYRVLDVAGGTGDVAFRIAEAS-DNRSQIVVADINNEMLSVGRDRAFKENLQDCIT-FIEANAETLPFEANSFDACT 145 (265) Q Consensus 68 ~~~~~~iLDiGcGTG~~~~~l~~~~-~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~-~~~~da~~lp~~d~sfD~V~ 145 (265) T Consensus 85 ~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~-~s~~l~~~~~eD~~----~~s~~~l~s 159 (335) T KOG2918 85 TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPE-LSSILLGLHDEDVV----DLSGTDLHS 159 (335) T ss_pred CCCCEEEEECCCCCCCHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHCCCCC-HHHHHHCCCCCCCC----CCCCCEECC T ss_conf 5786599973777551233122047767632898237289887776304681-56666400114532----368641116 Q ss_pred EEEEECCCHHHHHHHCCCCHHCCCCCE------EEEEEC----CCCCC--CHHHHHHHHHHHCH-------HH--HHHHH Q ss_conf 664201321344320121000485211------776305----54455--10112345653111-------33--21025 Q gi|254780624|r 146 LAFGIRNMPHITLVLQEIYRILKCGGR------LLVLEF----SEVQG--PVFKKIYDMWSFKV-------IP--QLGRF 204 (265) Q Consensus 146 ~sf~l~~~~d~~~~l~e~~RvLKpGG~------~~i~df----~~p~~--~~~~~~~~~y~~~i-------iP--~~g~~ 204 (265) T Consensus 160 ~~Y~~~g~-DLr-dl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~a~fv~YEQi~~~D~Fg~v 237 (335) T KOG2918 160 GRYHLIGC-DLR-DLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFENAHFVNYEQINPNDRFGKV 237 (335) T ss_pred CCEEEECC-CHH-HHHHHHHHHHHCCCCCCCCEEEHHHHHHEECCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHH T ss_conf 76026526-603-3699999987506686766134411453131688889999999985777618987505777838999 Q ss_pred HCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEEC Q ss_conf 42887686578999996899899999999759953799985 Q gi|254780624|r 205 IAGDEEPYQYLIESIRRFPNQQDFAAVISAAGFSNVSFTNY 245 (265) Q Consensus 205 ~~~~~~~Y~yL~~Si~~f~~~~el~~~l~~aGF~~v~~~~~ 245 (265) T Consensus 238 M~~nlk~r~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm 278 (335) T KOG2918 238 MLANLKRRGCPLHGLETYNSIESQRSRFLKAGWEYVIAVDM 278 (335) T ss_pred HHHHHHHCCCCCCHHHHCCCHHHHHHHHHHCCCCEEEHHHH T ss_conf 99988854997762432456899999998668752421329 |
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-30 Score=214.77 Aligned_cols=143 Identities=23% Similarity=0.408 Sum_probs=118.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCC Q ss_conf 99999998763421157667614801799999985206446799779860233557777766413886327872133222 Q gi|254780624|r 28 NMVNHVFSRVSHRYDVMNDLMSLGLHRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEM 107 (265) Q Consensus 28 ~~v~~~F~~iA~~YD~~N~~~S~G~~r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~M 107 (265) T Consensus 7 ~~V~~~F~raA~~Yd~~A~~-----Q~~~a~~Ll~~l~~~~~--~~vLDlGcGtG~~t~~l~~~~---~~v~~~Dls~~M 76 (251) T PRK10258 7 QAIAAAFGRAAAHYEQHADL-----QRQSADALLAMLPQRKF--THVLDAGCGPGWMSRYWRERG---SQVTALDLSPPM 76 (251) T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHCCCCCC--CCEEEEEEHHHHHHHHHHHCC---CEEEEEECCHHH T ss_conf 99999998998658773699-----99999999973665789--939998310027899999749---969999598999 Q ss_pred CCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHH Q ss_conf 21111000001122222222222333457554467403664201321344320121000485211776305544551011 Q gi|254780624|r 108 LSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFK 187 (265) Q Consensus 108 l~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~ 187 (265) T Consensus 77 l~~a~~~~------~~~~~~~~D~e~Lp~~~~sfDli~S~~~lqW~~d~~~~l~e~~rvLkPgG~l~f---st~g~~tl~ 147 (251) T PRK10258 77 LAQARQKD------AADHYLAGDIESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAF---TTLVQGSLP 147 (251) T ss_pred HHHHHHHC------CCHHHHHCHHHHCCCCCCCCCEEEECCCHHHCCCHHHHHHHHHHHCCCCCEEEE---ECCCCCCHH T ss_conf 99998748------633435360630999878821785504045259999999999964589949999---815757689 Q ss_pred HH Q ss_conf 23 Q gi|254780624|r 188 KI 189 (265) Q Consensus 188 ~~ 189 (265) T Consensus 148 EL 149 (251) T PRK10258 148 EL 149 (251) T ss_pred HH T ss_conf 99 |
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.8e-16 Score=124.17 Aligned_cols=134 Identities=23% Similarity=0.286 Sum_probs=107.9 Q ss_pred HHHHHHHHHHHHHCCCHHH-------H-------------HHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCC Q ss_conf 6342115766761480179-------9-------------9999852064467997798602335577777664138863 Q gi|254780624|r 37 VSHRYDVMNDLMSLGLHRF-------W-------------KEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRS 96 (265) Q Consensus 37 iA~~YD~~N~~~S~G~~r~-------W-------------r~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~ 96 (265) T Consensus 116 i~~HYDlgNdfy~l~LD~~M~YSca~f~~~~tLe~AQ~~Kl~~i~~kl~l~~G--~~VLeIGcGWGgla~~aA~~~g--~ 191 (383) T PRK11705 116 GKEHYDLGNDLFSAMLDPRMQYSCGYWKDADTLEEAQEAKLDLICRKLQLKPG--MRVLDIGCGWGGLARYAAEHYG--V 191 (383) T ss_pred CHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC--CEEEEECCCHHHHHHHHHHHCC--C T ss_conf 55322788189997169874422121699999999999999999986489999--9798857874999999999749--7 Q ss_pred EEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC--HHHHHHHCCCCHHCCCCCEEE Q ss_conf 278721332222111100000112222222222233345755446740366420132--134432012100048521177 Q gi|254780624|r 97 QIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFGIRNM--PHITLVLQEIYRILKCGGRLL 174 (265) Q Consensus 97 ~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~~~--~d~~~~l~e~~RvLKpGG~~~ 174 (265) T Consensus 192 ~VtgiTlS~eQ~~~a~~r~~--gl--~v~v~l~DYRd~---~g~fD~IvSIeM~EhVG~~~~~~yF~~i~~lLkp~G~~~ 264 (383) T PRK11705 192 SVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL---NGQFDRIVSVGMFEHVGPKNYRTYFEVVDRCLKPDGLFL 264 (383) T ss_pred EEEEEECCHHHHHHHHHHHC--CC--CCEEEECCHHHC---CCCCCEEEEEEHHHHCCHHHHHHHHHHHHHHCCCCCEEE T ss_conf 59998588999999999973--89--878997152443---677355999714865287779999999998569997399 Q ss_pred EEECCCC Q ss_conf 6305544 Q gi|254780624|r 175 VLEFSEV 181 (265) Q Consensus 175 i~df~~p 181 (265) T Consensus 265 lqtI~~~ 271 (383) T PRK11705 265 LHTIGSN 271 (383) T ss_pred EEEECCC T ss_conf 9993366 |
|
| >KOG1541 consensus | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.6e-13 Score=107.26 Aligned_cols=131 Identities=21% Similarity=0.309 Sum_probs=91.2 Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCC Q ss_conf 87634211576676148017999999852064467997798602335577777664138863278721332222111100 Q gi|254780624|r 35 SRVSHRYDVMNDLMSLGLHRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDR 114 (265) Q Consensus 35 ~~iA~~YD~~N~~~S~G~~r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r 114 (265) T Consensus 17 d~eA~kYt~nsri~~-IQ~em-~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~---Gh~wiGvDiSpsML~~a~~~ 91 (270) T KOG1541 17 DTEAPKYTQNSRIVL-IQAEM-AERALELLALPGPKSGLILDIGCGSGLSGSVLSDS---GHQWIGVDISPSMLEQAVER 91 (270) T ss_pred HHHHHHCCCCCEEEE-EHHHH-HHHHHHHHHCCCCCCCEEEEECCCCCCCHHEECCC---CCEEEEECCCHHHHHHHHHH T ss_conf 023210266634432-21778-88789876089988717998345777432002168---95588622898999999976 Q ss_pred HHCCCCCCCCCCCCCCC-CCCCCCCCCCCCCEEEEEECC---------CH--HHHHHHCCCCHHCCCCCEEEEE Q ss_conf 00011222222222223-334575544674036642013---------21--3443201210004852117763 Q gi|254780624|r 115 AFKENLQDCITFIEANA-ETLPFEANSFDACTLAFGIRN---------MP--HITLVLQEIYRILKCGGRLLVL 176 (265) Q Consensus 115 ~~~~~~~~~i~~~~~da-~~lp~~d~sfD~V~~sf~l~~---------~~--d~~~~l~e~~RvLKpGG~~~i~ 176 (265) T Consensus 92 e~e------gdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270) T KOG1541 92 ELE------GDLILCDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ 159 (270) T ss_pred HHH------CCEEEEECCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEE T ss_conf 640------47663124788788997412478862032101468444673899999866453210368615888 |
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.3e-12 Score=101.34 Aligned_cols=123 Identities=23% Similarity=0.362 Sum_probs=92.5 Q ss_pred HHCCCHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCC Q ss_conf 61480179999998520644679977986023355777776641388632787213322221111000001122222222 Q gi|254780624|r 48 MSLGLHRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFI 127 (265) Q Consensus 48 ~S~G~~r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~ 127 (265) T Consensus 27 ~~~~~Dai---LL~~~~~~~~--~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~ 100 (248) T COG4123 27 FRYGTDAI---LLAAFAPVPK--KGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVI 100 (248) T ss_pred CCCCCHHH---HHHHHCCCCC--CCEEEEECCCCCHHHHHHHCCCCC-CCEEEEEECHHHHHHHHHHHHHCCCHHHEEEE T ss_conf 16640899---9976526566--876988368946899997455877-80799981799999999988618613401676 Q ss_pred CCCCCCCC--CCCCCCCCCEEE---EEE-------------CCC--HHHHHHHCCCCHHCCCCCEEEEE Q ss_conf 22233345--755446740366---420-------------132--13443201210004852117763 Q gi|254780624|r 128 EANAETLP--FEANSFDACTLA---FGI-------------RNM--PHITLVLQEIYRILKCGGRLLVL 176 (265) Q Consensus 128 ~~da~~lp--~~d~sfD~V~~s---f~l-------------~~~--~d~~~~l~e~~RvLKpGG~~~i~ 176 (265) T Consensus 101 ~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V 169 (248) T COG4123 101 EADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFV 169 (248) T ss_pred HHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEE T ss_conf 430887654236565478995989878753348674665566322288999999999974679789999 |
|
| >pfam05401 NodS Nodulation protein S (NodS) | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.8e-13 Score=104.22 Aligned_cols=136 Identities=18% Similarity=0.225 Sum_probs=101.2 Q ss_pred HHHHHHHHHHHH----CCCHHHHH-----HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCC Q ss_conf 342115766761----48017999-----999852064467997798602335577777664138863278721332222 Q gi|254780624|r 38 SHRYDVMNDLMS----LGLHRFWK-----EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEML 108 (265) Q Consensus 38 A~~YD~~N~~~S----~G~~r~Wr-----~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml 108 (265) T Consensus 3 ~~~~~ll~relaadDPW~~~s~wYE~~r~~~~l~aaLp~~r-y~~alE~GCa~G~lT~~LA~RCd---rLla~Dvs~~Av 78 (201) T pfam05401 3 DGNYQLLNRELAADDPWRLDSNPFEQERHTQMLRLSLAQGT-IANALEVGCAAGAFTERLAPYCQ---RLTVIDVMPEAI 78 (201) T ss_pred CCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHH-HHHHCCCCCCCCHHHHHHHHHHH---HHHHHCCCHHHH T ss_conf 43788998751579997887768789999999998678343-30020435662487899999874---673213629999 Q ss_pred CCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE---ECCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCCC Q ss_conf 11110000011222222222223334575544674036642---01321344320121000485211776305544551 Q gi|254780624|r 109 SVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFG---IRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGP 184 (265) Q Consensus 109 ~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~---l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~ 184 (265) T Consensus 79 ~~Ar~Rla~~---~hV~v~~~~vp~-~wP~~~FDLIV~SEVlYYL~d~a~lr~~~~~~v~~LaP~G~Lv---fgsarda 150 (201) T pfam05401 79 ARARLRMKKW---SHISWIVSDVQQ-FSTNELFDLIVVAEVLYYLGDVAEMRGAVRNLVSMLAPDGQLV---FGSARDA 150 (201) T ss_pred HHHHHHHCCC---CCCEEEECCCCC-CCCCCCEEEEEEEHHHHHHCCHHHHHHHHHHHHHHHCCCCEEE---EECCCCC T ss_conf 9999985579---982898256666-5998886279751477861879999999999999718996599---7304510 |
This family consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors. |
| >KOG1331 consensus | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.2e-12 Score=96.63 Aligned_cols=132 Identities=24% Similarity=0.368 Sum_probs=95.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECC Q ss_conf 99999999999876342115766761480179999998520644679977986023355777776641388632787213 Q gi|254780624|r 24 EEKQNMVNHVFSRVSHRYDVMNDLMSLGLHRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADI 103 (265) Q Consensus 24 ~~k~~~v~~~F~~iA~~YD~~N~~~S~G~~r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~ 103 (265) T Consensus 8 eleqeyVh~IYd~ia~~f-------s~tr~~~Wp~-v~qfl~~~~~-gsv~~d~gCGngky---~~-~-~p~~~~ig~D~ 73 (293) T KOG1331 8 ELEQEYVHSIYDKIATHF-------SATRAAPWPM-VRQFLDSQPT-GSVGLDVGCGNGKY---LG-V-NPLCLIIGCDL 73 (293) T ss_pred HHHHHHHHHHHHHHHHHC-------CCCCCCCCHH-HHHHHHCCCC-CCEEEECCCCCCCC---CC-C-CCCCEEEECCH T ss_conf 999987579998765530-------6544476178-9999850687-64045424687655---76-7-98631540302 Q ss_pred CCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCH---HHHHHHCCCCHHCCCCCEEEEE Q ss_conf 322221111000001122222222222333457554467403664201321---3443201210004852117763 Q gi|254780624|r 104 NNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFGIRNMP---HITLVLQEIYRILKCGGRLLVL 176 (265) Q Consensus 104 s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~~~~---d~~~~l~e~~RvLKpGG~~~i~ 176 (265) T Consensus 74 c~~l~~~ak~~~~-------~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvy 142 (293) T KOG1331 74 CTGLLGGAKRSGG-------DNVCRADALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVY 142 (293) T ss_pred HHHHCCCCCCCCC-------CEEEHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE T ss_conf 2322053334798-------62561244428987876000323354444436778999999999872678856899 |
|
| >pfam06325 PrmA Ribosomal protein L11 methyltransferase (PrmA) | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.2e-11 Score=92.50 Aligned_cols=149 Identities=19% Similarity=0.275 Sum_probs=96.4 Q ss_pred CCEECCHHHHHHHHHHHHHHH--------HH---HHHH-------HHHHHHC--CCHHHHHHHHHHHHCCCCCCCCEEEE Q ss_conf 521279899999999999876--------34---2115-------7667614--80179999998520644679977986 Q gi|254780624|r 17 GFREVPEEEKQNMVNHVFSRV--------SH---RYDV-------MNDLMSL--GLHRFWKEAMVTNLNPRKSKDYRVLD 76 (265) Q Consensus 17 Gf~~v~~~~k~~~v~~~F~~i--------A~---~YD~-------~N~~~S~--G~~r~Wr~~~i~~l~~~~~~~~~iLD 76 (265) T Consensus 88 ~~~~~~~~DW~~~wk~~f~P~~ig~~~~I~PsW~~~~~~~~~~I~idPGmAFGTG~H~T-T~lcl~~l~~~~~~~~~vlD 166 (294) T pfam06325 88 TVEEVEEEDWARAWKKYFHPVRIGERLTIVPSWEDYPEPDAVNIELDPGMAFGTGTHPT-TALCLEALESLVKPGETVLD 166 (294) T ss_pred EEEECCCHHHHHHHHHHCCCEEECCEEEEECCCCCCCCCCCEEEEECCCCCCCCCCCHH-HHHHHHHHHHHCCCCCEEEE T ss_conf 89980622389999874897797582999689877999763589866643456777757-99999999865036986785 Q ss_pred CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHH Q ss_conf 02335577777664138863278721332222111100000112222222222233345755446740366420132134 Q gi|254780624|r 77 VAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFGIRNMPHI 156 (265) Q Consensus 77 iGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~~~~d~ 156 (265) T Consensus 167 ~GcGSGILaIaA~klGa--~~v~a~DiDp~Av~~a~eN~~~N~v~~~~~~~~--~~~--~~~~~~DlIvANI-l--a~~L 237 (294) T pfam06325 167 VGCGSGILAIAALKLGA--KKVVGVDIDPVAVRAAKENAELNGVEAQLEVYL--PGD--LPEGKADVVVANI-L--ADPL 237 (294) T ss_pred ECCCHHHHHHHHHHCCC--CCEEEEECCHHHHHHHHHHHHHCCCCCCEEEEC--CCC--CCCCCCCEEEEHH-C--HHHH T ss_conf 05650899999997599--968999888999999999999769983179964--431--5566457898410-8--9999 Q ss_pred HHHHCCCCHHCCCCCEEEE Q ss_conf 4320121000485211776 Q gi|254780624|r 157 TLVLQEIYRILKCGGRLLV 175 (265) Q Consensus 157 ~~~l~e~~RvLKpGG~~~i 175 (265) T Consensus 238 ~~l~~~~~~~l~~~G~lil 256 (294) T pfam06325 238 IELAPDIYALVKPGGYLIL 256 (294) T ss_pred HHHHHHHHHHHCCCCEEEE T ss_conf 9999999997389989999 |
This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences. |
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.4e-10 Score=85.85 Aligned_cols=118 Identities=23% Similarity=0.317 Sum_probs=89.4 Q ss_pred HHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCC Q ss_conf 17999999852064467997798602335577777664138863278721332222111100000112222222222233 Q gi|254780624|r 53 HRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAE 132 (265) Q Consensus 53 ~r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~ 132 (265) T Consensus 182 ~P~lAR~mVNLa~v~~G~--~vlDPFcGTGgiLiEagl-~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~ 256 (347) T COG1041 182 DPRLARAMVNLARVKRGE--LVLDPFCGTGGILIEAGL-M--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDAT 256 (347) T ss_pred CHHHHHHHHHHHCCCCCC--EEECCCCCCCHHHHHHHH-C--CCEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCC T ss_conf 989999987774164698--764576783488883664-2--75676032379998556641566276761688730221 Q ss_pred CCCCCCCCCCCCEE--EEEECC------CHH-HHHHHCCCCHHCCCCCEEEE Q ss_conf 34575544674036--642013------213-44320121000485211776 Q gi|254780624|r 133 TLPFEANSFDACTL--AFGIRN------MPH-ITLVLQEIYRILKCGGRLLV 175 (265) Q Consensus 133 ~lp~~d~sfD~V~~--sf~l~~------~~d-~~~~l~e~~RvLKpGG~~~i 175 (265) T Consensus 257 ~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf 308 (347) T COG1041 257 NLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVF 308 (347) T ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEE T ss_conf 2778877423588469987100245552899999999999987304848999 |
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase; InterPro: IPR004498 Ribosomal protein L11 methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.89 E-value=3e-09 Score=79.73 Aligned_cols=118 Identities=21% Similarity=0.273 Sum_probs=87.4 Q ss_pred CCHHHHHHHHHHHHCCCCCCC--CEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCC Q ss_conf 801799999985206446799--779860233557777766413886327872133222211110000011222222222 Q gi|254780624|r 51 GLHRFWKEAMVTNLNPRKSKD--YRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIE 128 (265) Q Consensus 51 G~~r~Wr~~~i~~l~~~~~~~--~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~ 128 (265) T Consensus 176 GtH~T-T~LCLe~L~~~d~k~kh~~viD~GCGSGIL~IAa~~LGa--~~~~g~D~DP~Ave~~r~N~~lN~v~~~~~~~~ 252 (330) T TIGR00406 176 GTHPT-TSLCLELLEDLDLKDKHKKVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAELNQVSDRLQVKL 252 (330) T ss_pred CCCHH-HHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHH--HHEEEECCCHHHHHHHHHHHHHCCCCHHHHHHH T ss_conf 97457-899999874014777665478712671789999997512--311221377289999997687458864576432 Q ss_pred CCC--CCCCCCCCCCCCCEEEEEECCCHH-HHHHHCCCCHHCCCCCEEEE Q ss_conf 223--334575544674036642013213-44320121000485211776 Q gi|254780624|r 129 ANA--ETLPFEANSFDACTLAFGIRNMPH-ITLVLQEIYRILKCGGRLLV 175 (265) Q Consensus 129 ~da--~~lp~~d~sfD~V~~sf~l~~~~d-~~~~l~e~~RvLKpGG~~~i 175 (265) T Consensus 253 ~~~vPe~~~~~e~~~DViVANi----LA~vi~~L~p~~~~L~~~~G~lil 298 (330) T TIGR00406 253 ENSVPELEQPIEGKADVIVANI----LAEVIKELYPQFSRLVKPGGHLIL 298 (330) T ss_pred CCCCCCCCCCCCCCCCEEEECC----HHHHHHHHHHHHHHHCCCCCCEEE T ss_conf 0578753453225667578800----245787641355131068996574 |
1.1 from EC) is required for the methylation of ribosomal protein L11. It forms a bifunctional operon in Escherichia coli with panF (pantothenate transport).; GO: 0008276 protein methyltransferase activity, 0006479 protein amino acid methylation. |
| >PRK00107 gidB glucose-inhibited division protein B; Reviewed | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.8e-08 Score=72.68 Aligned_cols=119 Identities=26% Similarity=0.365 Sum_probs=89.3 Q ss_pred CCHHHHHHHHHHHHCCCC----CCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCC Q ss_conf 801799999985206446----7997798602335577777664138863278721332222111100000112222222 Q gi|254780624|r 51 GLHRFWKEAMVTNLNPRK----SKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITF 126 (265) Q Consensus 51 G~~r~Wr~~~i~~l~~~~----~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~ 126 (265) T Consensus 46 ~~~~~~~rHi~DSl~~~~~~~~~~~~~vlDiGSGaGfPGiplAI~~-p~~~~~Lves~~KK~~FL~~~~~~L~L-~nv~v 123 (216) T PRK00107 46 DPEEMWVRHILDSLALLPYLQGEKPIRVLDVGSGAGFPGIPLAIAR-PDLQVTLVDSLGKKIAFLRQVAAELGL-KNVTV 123 (216) T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHC-CCCCEEEECHHHHHHHHHHHHHHHCCC-CCEEE T ss_conf 9899999988857889873376658779970799994267899977-877299973876999999999997699-98799 Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEE Q ss_conf 22223334575544674036642013213443201210004852117763 Q gi|254780624|r 127 IEANAETLPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVL 176 (265) Q Consensus 127 ~~~da~~lp~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~ 176 (265) T Consensus 124 ~~~R~E~~~~-~~~fD~its----RAva~l~~l~~~~~~~l~~~g~~i~~ 168 (216) T PRK00107 124 VHGRAEEFGQ-EEKFDVVTS----RAVASLSDLVELCLPLLKPGGRFLAL 168 (216) T ss_pred EEHHHHCCCC-CCCCCEEEE----EHHHCHHHHHHHHHHHCCCCCEEEEE T ss_conf 8635440465-678668986----05406999999999754889799998 |
|
| >pfam02527 GidB rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.8e-07 Score=68.36 Aligned_cols=119 Identities=18% Similarity=0.238 Sum_probs=89.9 Q ss_pred CCHHHHHHHHHHHHCCC---CCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCC Q ss_conf 80179999998520644---679977986023355777776641388632787213322221111000001122222222 Q gi|254780624|r 51 GLHRFWKEAMVTNLNPR---KSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFI 127 (265) Q Consensus 51 G~~r~Wr~~~i~~l~~~---~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~ 127 (265) T Consensus 26 ~~~~i~~rHi~DSl~~~~~~~~~~~~ilDiGSGaGfPGi~LAI~~-p~~~~~LvEs~~KK~~FL~~v~~~L~L-~nv~v~ 103 (184) T pfam02527 26 EPNELLERHLLDSLVVLEYLDNIRIKVADVGSGAGFPGIPLAIAF-PDKKLTLLESLLKKINFLEELKKELNL-ENVTIV 103 (184) T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHC-CCCEEEEEECHHHHHHHHHHHHHHCCC-CCEEEE T ss_conf 989999999999999877426679868834798884679999967-785599992828999999999998599-976999 Q ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEE Q ss_conf 2223334575544674036642013213443201210004852117763 Q gi|254780624|r 128 EANAETLPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVL 176 (265) Q Consensus 128 ~~da~~lp~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~ 176 (265) T Consensus 104 ~~R~E~~~~-~~~~D~v~a----RA~a~l~~ll~~~~~~l~~~g~~i~~ 147 (184) T pfam02527 104 HARAEEYQH-EEQYDVITS----RAVASLNELTEWALPLLKPGGYFLAY 147 (184) T ss_pred ECCHHHCCC-CCCCCEEEE----CHHCCHHHHHHHHHHHCCCCCEEEEE T ss_conf 560441464-467878998----10057999999999863889899998 |
This is a family of bacterial glucose inhibited division proteins these are probably involved in the regulation of cell devision. GidB has been shown to be a methyltransferase G specific to the rRNA small subunit. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. GidB specifically methylates the N7 position of a guanosine in 16S rRNA. |
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.2e-07 Score=67.73 Aligned_cols=119 Identities=19% Similarity=0.312 Sum_probs=87.7 Q ss_pred CCHHHHHHHHHHHHCCCCCC---CCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCC Q ss_conf 80179999998520644679---977986023355777776641388632787213322221111000001122222222 Q gi|254780624|r 51 GLHRFWKEAMVTNLNPRKSK---DYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFI 127 (265) Q Consensus 51 G~~r~Wr~~~i~~l~~~~~~---~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~ 127 (265) T Consensus 45 ~~~e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~~-p~~~vtLles~~Kk~~FL~~~~~eL~L-~nv~i~ 122 (215) T COG0357 45 DPEELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIAF-PDLKVTLLESLGKKIAFLREVKKELGL-ENVEIV 122 (215) T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHC-CCCCEEEECCCCHHHHHHHHHHHHHCC-CCEEEE T ss_conf 878999999999864665025668879985799997317688856-688189971675079999999998599-974986 Q ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEE Q ss_conf 222333457554467403664201321344320121000485211776 Q gi|254780624|r 128 EANAETLPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLV 175 (265) Q Consensus 128 ~~da~~lp~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i 175 (265) T Consensus 123 ~~RaE~~~~~~~~~D~vtsR----Ava~L~~l~e~~~pllk~~g~~~~ 166 (215) T COG0357 123 HGRAEEFGQEKKQYDVVTSR----AVASLNVLLELCLPLLKVGGGFLA 166 (215) T ss_pred HHHHHHCCCCCCCCCEEEEE----EECCHHHHHHHHHHHCCCCCCCHH T ss_conf 31276601446657589854----202568899999984346883202 |
|
| >TIGR00138 gidB methyltransferase GidB; InterPro: IPR003682 GidB (glucose-inhibited division protein B) appears to be present and in a single copy in all complete eubacterial genomes so far | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.3e-06 Score=62.74 Aligned_cols=118 Identities=16% Similarity=0.268 Sum_probs=85.9 Q ss_pred CHHHHHHHHHHHHCCCCC----C----CCEEEECCHHHHHHHHHHH-HHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCC Q ss_conf 017999999852064467----9----9779860233557777766-413886327872133222211110000011222 Q gi|254780624|r 52 LHRFWKEAMVTNLNPRKS----K----DYRVLDVAGGTGDVAFRIA-EASDNRSQIVVADINNEMLSVGRDRAFKENLQD 122 (265) Q Consensus 52 ~~r~Wr~~~i~~l~~~~~----~----~~~iLDiGcGTG~~~~~l~-~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~ 122 (265) T Consensus 23 ~~~~~~~h~lDSl~~~~~~~~~~~~r~~~~~~DiGSG~GfPGipL~Ci~-~p~~~~~Lles~~KK~~FL~~v~~~L~L-~ 100 (197) T TIGR00138 23 PEEIIQRHLLDSLKLLELFDISKNQRTGKKVIDIGSGAGFPGIPLACIL-RPELKLTLLESNKKKVNFLKEVKKELGL-N 100 (197) T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHC-CCCCEEEEECCCCCHHHHHHHHHHHHCC-C T ss_conf 1678776402224330000245666633126773478971456534220-5764289842774068999999998389-9 Q ss_pred CCCCCCCCCCC---CCCCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEE Q ss_conf 22222222333---4575544674036642013213443201210004852117763 Q gi|254780624|r 123 CITFIEANAET---LPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVL 176 (265) Q Consensus 123 ~i~~~~~da~~---lp~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~ 176 (265) T Consensus 101 N~~i~~~R~E~~g~~~~-~~~~D~~~~R-A---l~~l~~~~e~~~~L~~~~G~~~~~ 152 (197) T TIGR00138 101 NVEILNGRVEDLGSKQH-EEQFDVITSR-A---LVSLNELLELTLPLLKVGGYFLAY 152 (197) T ss_pred CCHHEEHHHHHCCCCCC-CCCCCEEEEC-C---CHHHHHHHHHHHHCCCCCCEEEEE T ss_conf 82420011255055453-3357878980-3---102468888663037889789997 |
Its mode of action is unknown, but a methytransferase fold is reported from the crystal structure. It may be a family of bacterial glucose inhibited division proteins that are involved in the regulation of cell division .; GO: 0007049 cell cycle. |
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.8e-06 Score=60.68 Aligned_cols=124 Identities=17% Similarity=0.288 Sum_probs=83.4 Q ss_pred HHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCC--HHCCC----C Q ss_conf 76148017999999852064467997798602335577777664138863278721332222111100--00011----2 Q gi|254780624|r 47 LMSLGLHRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDR--AFKEN----L 120 (265) Q Consensus 47 ~~S~G~~r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r--~~~~~----~ 120 (265) T Consensus 117 FSS~DEyRY-HEaLVHPaMa~~~~~~rVLILGGGDGLAlREVLKy-p~Ve~VTLVDLDP~mt~Lar~~p~L~~LN~~AL~ 194 (363) T PRK01581 117 FSSVDEQIY-HEALVHPIMSKVIDPKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMIDMARNVPELVSLNKSAFF 194 (363) T ss_pred CCCHHHHHH-HHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHCC-CCCCEEEEEECCHHHHHHHHHCHHHHHHHHHHCC T ss_conf 040067677-77653266531788773899807643999998717-9856278995699999987519799875120014 Q ss_pred CCCCCCCCCCCCC-CCCCCCCCCCCEEEEEECCCHHHHH----------HHCCCCHHCCCCCEEEEEE Q ss_conf 2222222222333-4575544674036642013213443----------2012100048521177630 Q gi|254780624|r 121 QDCITFIEANAET-LPFEANSFDACTLAFGIRNMPHITL----------VLQEIYRILKCGGRLLVLE 177 (265) Q Consensus 121 ~~~i~~~~~da~~-lp~~d~sfD~V~~sf~l~~~~d~~~----------~l~e~~RvLKpGG~~~i~d 177 (265) T Consensus 195 DPRV~Vvn~DAf~wL~~~~~~FDvIIVD-----lPDP~n~~L~KLYS~eFY~Ll~~~La~dG~~vVQS 257 (363) T PRK01581 195 DNRVNTHVCDAKEFLSSPSSLYDVIIID-----FPDPATELLSTLYTSELFARIATFLTEDGAFVCQS 257 (363) T ss_pred CCCEEEEECCHHHHHHCCCCCCCEEEEE-----CCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEE T ss_conf 9804999210899986167544289995-----89998624666735999999998619885399960 |
|
| >KOG1709 consensus | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00017 Score=49.11 Aligned_cols=129 Identities=22% Similarity=0.322 Sum_probs=80.4 Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHC-CCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCC Q ss_conf 157667614801799999985206-4467997798602335577777664138863278721332222111100000112 Q gi|254780624|r 42 DVMNDLMSLGLHRFWKEAMVTNLN-PRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENL 120 (265) Q Consensus 42 D~~N~~~S~G~~r~Wr~~~i~~l~-~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~ 120 (265) T Consensus 72 D~ll~~~~k~VMm~WEtpiMha~A~ai~tkggrvLnVGFGMgIidT~iQe~-~p~-~H~IiE~hp~V~krmr~~gw~e-- 147 (271) T KOG1709 72 DTLLDSLGKGVMMRWETPIMHALAEAISTKGGRVLNVGFGMGIIDTFIQEA-PPD-EHWIIEAHPDVLKRMRDWGWRE-- 147 (271) T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHC-CCC-CEEEEECCHHHHHHHHHCCCCC-- T ss_conf 677764054355652148999999998617964898423167788888635-986-3178735978999998636654-- Q ss_pred CCCCCCCCCCCCC--CCCCCCCCCCCEE-EEEECCCHHHHHHHCCCCHHCCCCCEEEE Q ss_conf 2222222222333--4575544674036-64201321344320121000485211776 Q gi|254780624|r 121 QDCITFIEANAET--LPFEANSFDACTL-AFGIRNMPHITLVLQEIYRILKCGGRLLV 175 (265) Q Consensus 121 ~~~i~~~~~da~~--lp~~d~sfD~V~~-sf~l~~~~d~~~~l~e~~RvLKpGG~~~i 175 (265) T Consensus 148 k~nViil~g~WeDvl~~L~d~~FDGI~yDTy~-e~yEdl~~~hqh~~rLLkP~gv~Sy 204 (271) T KOG1709 148 KENVIILEGRWEDVLNTLPDKHFDGIYYDTYS-ELYEDLRHFHQHVVRLLKPEGVFSY 204 (271) T ss_pred CCCEEEEECCHHHHHCCCCCCCCCEEEEECHH-HHHHHHHHHHHHHHHHCCCCCEEEE T ss_conf 45468871346764401445675626751301-6789999999877640087744888 |
|
| >KOG1099 consensus | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.001 Score=44.10 Aligned_cols=119 Identities=16% Similarity=0.301 Sum_probs=74.4 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHH-HHHHHHHCC------CCCCCCEEEECCHHHHHHHHHHHHHCCC----CC--- Q ss_conf 999987634211576676148017999-999852064------4679977986023355777776641388----63--- Q gi|254780624|r 31 NHVFSRVSHRYDVMNDLMSLGLHRFWK-EAMVTNLNP------RKSKDYRVLDVAGGTGDVAFRIAEASDN----RS--- 96 (265) Q Consensus 31 ~~~F~~iA~~YD~~N~~~S~G~~r~Wr-~~~i~~l~~------~~~~~~~iLDiGcGTG~~~~~l~~~~~~----~~--- 96 (265) T Consensus 9 RDiYYRlAKe-------------~gwRARSAFKLlqideef~i~~g-v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~ 74 (294) T KOG1099 9 RDIYYRLAKE-------------NGWRARSAFKLLQIDEEFQIFEG-VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERD 74 (294) T ss_pred HHHHHHHHHH-------------CCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHH T ss_conf 6799998876-------------06157767777501366627760-367743530898399999999732488742011 Q ss_pred -EEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCC--------CCCCCCCCCCEEE-----EEECCCHHH------ Q ss_conf -27872133222211110000011222222222223334--------5755446740366-----420132134------ Q gi|254780624|r 97 -QIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETL--------PFEANSFDACTLA-----FGIRNMPHI------ 156 (265) Q Consensus 97 -~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~l--------p~~d~sfD~V~~s-----f~l~~~~d~------ 156 (265) T Consensus 75 ~kIVaVDLQ~-MaPI-----------~GV~qlq~DIT~~stae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLl 142 (294) T KOG1099 75 KKIVAVDLQP-MAPI-----------EGVIQLQGDITSASTAEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLL 142 (294) T ss_pred CCEEEEECCC-CCCC-----------CCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHH T ss_conf 6279985565-7766-----------762785045577768999999857997667884799874453208899999999 Q ss_pred HHHHCCCCHHCCCCCEEEE Q ss_conf 4320121000485211776 Q gi|254780624|r 157 TLVLQEIYRILKCGGRLLV 175 (265) Q Consensus 157 ~~~l~e~~RvLKpGG~~~i 175 (265) T Consensus 143 laAl~i~t~Vlk~Gg~FVa 161 (294) T KOG1099 143 LAALNIATCVLKPGGSFVA 161 (294) T ss_pred HHHHHHHHHEECCCCEEEH T ss_conf 9998777420147875255 |
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.0085 Score=38.20 Aligned_cols=115 Identities=15% Similarity=0.209 Sum_probs=73.8 Q ss_pred HHHH---HHHHHHHH----C-CCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCC Q ss_conf 1799---99998520----6-44679977986023355777776641388632787213322221111000001122222 Q gi|254780624|r 53 HRFW---KEAMVTNL----N-PRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCI 124 (265) Q Consensus 53 ~r~W---r~~~i~~l----~-~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i 124 (265) T Consensus 51 YR~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~---R~Ni 126 (231) T COG1889 51 YREWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEK---RPNI 126 (231) T ss_pred EEEECCCHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHHHCCC-CCCEEEEEECCHHHHHHHHHHHH---CCCC T ss_conf 5656765137799997370027769998789950367985767776047-87089999644469999999874---7874 Q ss_pred CCCCCCCCCCC-C--CCCCCCCCEEEEEECCCHHH---HHHHCCCCHHCCCCCEEEEE Q ss_conf 22222233345-7--55446740366420132134---43201210004852117763 Q gi|254780624|r 125 TFIEANAETLP-F--EANSFDACTLAFGIRNMPHI---TLVLQEIYRILKCGGRLLVL 176 (265) Q Consensus 125 ~~~~~da~~lp-~--~d~sfD~V~~sf~l~~~~d~---~~~l~e~~RvLKpGG~~~i~ 176 (265) T Consensus 127 ~PIL~DA~~P~~Y~~~Ve~VDviy~-----DVAQp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231) T COG1889 127 IPILEDARKPEKYRHLVEKVDVIYQ-----DVAQPNQAEILADNAEFFLKKGGYVVIA 179 (231) T ss_pred EEEECCCCCCHHHHHHCCCCCEEEE-----ECCCCHHHHHHHHHHHHHCCCCCEEEEE T ss_conf 0020136883776531245438998-----3688107899998899732169739999 |
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.0063 Score=39.03 Aligned_cols=118 Identities=22% Similarity=0.296 Sum_probs=84.6 Q ss_pred HHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCC-CCCCCCCCCC Q ss_conf 179999998520644679977986023355777776641388632787213322221111000001122-2222222223 Q gi|254780624|r 53 HRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQ-DCITFIEANA 131 (265) Q Consensus 53 ~r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~-~~i~~~~~da 131 (265) T Consensus 540 hR~~R~~i~~~a-----~gk~fLNLF~YTgt~sv~Aa~g--GA~~t~sVD~S~tyl~Wa~~N~~lN~~~~~~h~~v~aD~ 612 (716) T PRK11783 540 HRPTRRMIGQMA-----KGKRFLNLFAYTGTASVHAALG--GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRFIQADC 612 (716) T ss_pred CHHHHHHHHHHH-----CCCCEEEEEECCCCEEHHHHHC--CCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEECCH T ss_conf 379999999970-----7884643122256102133527--961227862708799999999985499963473896408 Q ss_pred CC-CCCCCCCCCCCEE---EEE----EC---CC-HHHHHHHCCCCHHCCCCCEEEEEECCC Q ss_conf 33-4575544674036---642----01---32-134432012100048521177630554 Q gi|254780624|r 132 ET-LPFEANSFDACTL---AFG----IR---NM-PHITLVLQEIYRILKCGGRLLVLEFSE 180 (265) Q Consensus 132 ~~-lp~~d~sfD~V~~---sf~----l~---~~-~d~~~~l~e~~RvLKpGG~~~i~df~~ 180 (265) T Consensus 613 ~~wl~~~~~~fDli~~DPPtFSnSk~m~~~~dvqrDh~~li~~~~~~L~~~G~l~---FS~ 670 (716) T PRK11783 613 LAWLKEAREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKLAMRLLRPGGTLY---FSN 670 (716) T ss_pred HHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEE---EEC T ss_conf 9999857776678998899998766678863220309999999998608996899---962 |
|
| >TIGR00478 tly hemolysin A; InterPro: IPR004538 Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.0076 Score=38.50 Aligned_cols=126 Identities=17% Similarity=0.219 Sum_probs=76.8 Q ss_pred HHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCC--CCCC Q ss_conf 76148017999999852064467997798602335577777664138863278721332222111100000112--2222 Q gi|254780624|r 47 LMSLGLHRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENL--QDCI 124 (265) Q Consensus 47 ~~S~G~~r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~--~~~i 124 (265) T Consensus 57 fVSRGG~KL--~~~L~~F~~~vk-~ki~lD~GsS~GGFtd~aL~~GA--k~VY~vDVG~~ql~~kLR~D~Rv~~~eR~N~ 131 (240) T TIGR00478 57 FVSRGGEKL--KEALEEFEVDVK-NKIVLDVGSSTGGFTDCALQKGA--KEVYGVDVGYNQLAEKLRQDERVKVLERTNI 131 (240) T ss_pred EECCHHHHH--HHHCCCCCEEEC-CEEEEEECCCCCHHHHHHHHCCC--CEEEEEEECCHHHHHHCCCCCEEEEEECCCC T ss_conf 005045899--985354331337-86899705673048999987058--4677786032133432363662689645787 Q ss_pred C--CCCCCCC-CCCCCC-CCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHH Q ss_conf 2--2222233-345755-4467403664201321344320121000485211776305544551011 Q gi|254780624|r 125 T--FIEANAE-TLPFEA-NSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFK 187 (265) Q Consensus 125 ~--~~~~da~-~lp~~d-~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~ 187 (265) T Consensus 132 rGy~T~~d~~~~qP~P~lA~~Dv---SF-----iSl~~il~~L~~lL~P~~~~~~--L~kPqFe~~R 188 (240) T TIGR00478 132 RGYVTPADIVKDQPMPDLAVVDV---SF-----ISLISILPELLLLLNPDNDLLL--LVKPQFEVGR 188 (240) T ss_pred CCCCCHHHHHCCCCCCCHHHHHH---HH-----HHHHHHHHHHHHHHCCCCEEEE--EECCCCEEEE T ss_conf 44466565407888973144445---78-----8799999988875088960788--5077523330 |
The mechanism of action is not well defined. Hemolysin A is induced by sodium ribonucleate, and is produced by pathogenic bacterial strains. Hemolysin A from Treponema hyodysenteriae causes swine dysentry.; GO: 0003723 RNA binding, 0019836 hemolysis by symbiont of host red blood cells. |
| >KOG0024 consensus | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.018 Score=36.17 Aligned_cols=116 Identities=16% Similarity=0.254 Sum_probs=71.4 Q ss_pred HHCCCHHHHHHHHHHHHCCCCCCCCEEEECCHH-HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCC Q ss_conf 614801799999985206446799779860233-5577777664138863278721332222111100000112222222 Q gi|254780624|r 48 MSLGLHRFWKEAMVTNLNPRKSKDYRVLDVAGG-TGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITF 126 (265) Q Consensus 48 ~S~G~~r~Wr~~~i~~l~~~~~~~~~iLDiGcG-TG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~ 126 (265) T Consensus 155 LsV~~H------Acr~~~vk~G--s~vLV~GAGPIGl~t~l~Aka~GA-~~VVi~d~~~~Rle~Ak~-~Ga~~~-~~~~~ 223 (354) T KOG0024 155 LSVGVH------ACRRAGVKKG--SKVLVLGAGPIGLLTGLVAKAMGA-SDVVITDLVANRLELAKK-FGATVT-DPSSH 223 (354) T ss_pred HHHHHH------HHHHCCCCCC--CEEEEECCCHHHHHHHHHHHHCCC-CCEEEEECCHHHHHHHHH-HCCEEE-ECCCC T ss_conf 022120------3332476668--868997676899999999987498-728996067779999998-297577-30445 Q ss_pred CCCCCCCC------CCCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEECCCC Q ss_conf 22223334------57554467403664201321344320121000485211776305544 Q gi|254780624|r 127 IEANAETL------PFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFSEV 181 (265) Q Consensus 127 ~~~da~~l------p~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~~p 181 (265) T Consensus 224 ~~-~~~~~~~~v~~~~g~~~~d~~~dC------sG~~~~~~aai~a~r~gGt~vlvg~g~~ 277 (354) T KOG0024 224 KS-SPQELAELVEKALGKKQPDVTFDC------SGAEVTIRAAIKATRSGGTVVLVGMGAE 277 (354) T ss_pred CC-CHHHHHHHHHHHCCCCCCCEEEEC------CCCHHHHHHHHHHHCCCCEEEEECCCCC T ss_conf 56-589999999864166679868986------6604668989987512878999654787 |
|
| >KOG2198 consensus | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.017 Score=36.22 Aligned_cols=129 Identities=23% Similarity=0.353 Sum_probs=73.5 Q ss_pred CCHHHHHHHHHHHHCC---CCCCCCEEEECCHHHHHHHHHHHHHCCC---CCEEEEECCCCCCCCCCCCCHHCCCCCCCC Q ss_conf 8017999999852064---4679977986023355777776641388---632787213322221111000001122222 Q gi|254780624|r 51 GLHRFWKEAMVTNLNP---RKSKDYRVLDVAGGTGDVAFRIAEASDN---RSQIVVADINNEMLSVGRDRAFKENLQDCI 124 (265) Q Consensus 51 G~~r~Wr~~~i~~l~~---~~~~~~~iLDiGcGTG~~~~~l~~~~~~---~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i 124 (265) T Consensus 133 ~vg~i~rqeavSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~-~~l~~~~~ 211 (375) T KOG2198 133 GVGNIYRQEAVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQL-KRLPSPNL 211 (375) T ss_pred CCCCCHHHHHHHCCCHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHH-HCCCCCCE T ss_conf 44521124244226402022679984442013898448999999723777773675345788999999998-52698433 Q ss_pred CCCCCCCCCCC---------CCCCCCCCCEEE-----E-EECCCHH----------------H-HHHHCCCCHHCCCCCE Q ss_conf 22222233345---------755446740366-----4-2013213----------------4-4320121000485211 Q gi|254780624|r 125 TFIEANAETLP---------FEANSFDACTLA-----F-GIRNMPH----------------I-TLVLQEIYRILKCGGR 172 (265) Q Consensus 125 ~~~~~da~~lp---------~~d~sfD~V~~s-----f-~l~~~~d----------------~-~~~l~e~~RvLKpGG~ 172 (265) T Consensus 212 ~v~~~~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~ 291 (375) T KOG2198 212 LVTNHDASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGR 291 (375) T ss_pred EEECCCCEECCCCCCCCCCHHHHHHCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCE T ss_conf 34312110056410146760334412536871456898430228027666555411359738999999999987257877 Q ss_pred EEEEECCCCCC Q ss_conf 77630554455 Q gi|254780624|r 173 LLVLEFSEVQG 183 (265) Q Consensus 173 ~~i~df~~p~~ 183 (265) T Consensus 292 lV---YSTCSL 299 (375) T KOG2198 292 LV---YSTCSL 299 (375) T ss_pred EE---EECCCC T ss_conf 99---942578 |
|
| >pfam05711 TylF Macrocin-O-methyltransferase (TylF) | Back alignment and domain information |
|---|
Probab=90.50 E-value=1.5 Score=23.79 Aligned_cols=125 Identities=16% Similarity=0.177 Sum_probs=70.5 Q ss_pred CCHHHHH-HHHHHHHCCCCCCCCEEEECCHHHHHHHHHH---HHHCCC-CCEEEEECCCCCCCCCCC------------- Q ss_conf 8017999-9998520644679977986023355777776---641388-632787213322221111------------- Q gi|254780624|r 51 GLHRFWK-EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRI---AEASDN-RSQIVVADINNEMLSVGR------------- 112 (265) Q Consensus 51 G~~r~Wr-~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l---~~~~~~-~~~v~giD~s~~Ml~~a~------------- 112 (265) T Consensus 56 g~~RL~nl~~~ve~Vi~~~Ip-GDfVEcGVWrGGs~ilm~~~L~~~g~~~R~V~lfDTFeGmp~pt~~d~~~d~~~~~~~ 134 (249) T pfam05711 56 GLKRLDNLQQCVERVLRDGVP-GDFIETGVWRGGACIFMRGVLAAYGVTDRTVWVADSFAGVPAPDEDDHPLDREMRLHE 134 (249) T ss_pred CHHHHHHHHHHHHHHHHCCCC-CCEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHH T ss_conf 799999999999999975999-7579975434799999999999708878849997157898999711243323677764 Q ss_pred -------------CCHHCCCC-CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC----CCHHHHHHHCCCCHHCCCCCEEE Q ss_conf -------------00000112-2222222222333457554467403664201----32134432012100048521177 Q gi|254780624|r 113 -------------DRAFKENL-QDCITFIEANAETLPFEANSFDACTLAFGIR----NMPHITLVLQEIYRILKCGGRLL 174 (265) Q Consensus 113 -------------~r~~~~~~-~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~----~~~d~~~~l~e~~RvLKpGG~~~ 174 (265) T Consensus 135 ~~~~~~~s~e~Vk~Nf~~~~l~dd~V~fikG~f~DT-Lp~~~~~~I--a~-lrlD~D~YeSt~~~Le~lypkl~~GG~ii 210 (249) T pfam05711 135 YNEVLAVPLETVRENFARYGLLDDQVRFLPGWFKDT-LPTAPIERL--AV-LRLDGDLYESTMDALTNLYPKLSPGGFVI 210 (249) T ss_pred HCCHHCCCHHHHHHHHHHHCCCCCCEEEECCCHHHH-CCCCCCCCE--EE-EEEECCCHHHHHHHHHHHHCCCCCCCEEE T ss_conf 140323989999999997068854517955652320-154884527--89-99524311889999999734068882899 Q ss_pred EEECCC Q ss_conf 630554 Q gi|254780624|r 175 VLEFSE 180 (265) Q Consensus 175 i~df~~ 180 (265) T Consensus 211 iDDY~~ 216 (249) T pfam05711 211 VDDYCI 216 (249) T ss_pred EECCCC T ss_conf 926896 |
This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the swine industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex. |
| >KOG1227 consensus | Back alignment and domain information |
|---|
Probab=90.17 E-value=0.098 Score=31.36 Aligned_cols=132 Identities=17% Similarity=0.204 Sum_probs=78.0 Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCH Q ss_conf 76342115766761480179999998520644679977986023355777776641388632787213322221111000 Q gi|254780624|r 36 RVSHRYDVMNDLMSLGLHRFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRA 115 (265) Q Consensus 36 ~iA~~YD~~N~~~S~G~~r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~ 115 (265) T Consensus 165 GI~~~~d~t~~MFS~GN~~E-K~Rv~~~-s---c~~eviVDLYAGIGYFTlpflV~ag-Ak~V~A~EwNp~svEaLrR~~ 238 (351) T KOG1227 165 GITQIWDPTKTMFSRGNIKE-KKRVLNT-S---CDGEVIVDLYAGIGYFTLPFLVTAG-AKTVFACEWNPWSVEALRRNA 238 (351) T ss_pred CEEEEECHHHHHHHCCCHHH-HHHHHHC-C---CCCCHHHHHHCCCCEEEEEHHHCCC-CCEEEEEECCHHHHHHHHHHH T ss_conf 75798220555663576898-8776512-4---5653012234265448740230057-457999945879999999877 Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCC--EEEEEEC Q ss_conf 00112222222222233345755446740366420132134432012100048521--1776305 Q gi|254780624|r 116 FKENLQDCITFIEANAETLPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGG--RLLVLEF 178 (265) Q Consensus 116 ~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG--~~~i~df 178 (265) T Consensus 239 ~~N~V~~r~~i~~gd~R~-~~~~~~AdrVnLG--L--lPSse~~W~~A~k~Lk~eggsilHIHen 298 (351) T KOG1227 239 EANNVMDRCRITEGDNRN-PKPRLRADRVNLG--L--LPSSEQGWPTAIKALKPEGGSILHIHEN 298 (351) T ss_pred HHCCHHHHHHHHHCCCCC-CCCCCCCHHEEEC--C--CCCCCCCHHHHHHHHHHCCCCEEEEECC T ss_conf 741157887866510236-6755320203643--4--5655444288998841257837997425 |
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.1e-28 Score=199.75 Aligned_cols=106 Identities=28% Similarity=0.334 Sum_probs=100.2 Q ss_pred EEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC Q ss_conf 79860233557777766413886327872133222211110000011222222222223334575544674036642013 Q gi|254780624|r 73 RVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFGIRN 152 (265) Q Consensus 73 ~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~~ 152 (265) T Consensus 2 rVLDiGCG~G~~~~~LA~~~p-~~~v~GvDiS~~~ie~Ar~r~~~~gl~~rv~~~~~Da~~lpf~d-~FD~V~s~evl~H 79 (224) T smart00828 2 RVLDFGCGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPD-TYDLVFGFEVIHH 79 (224) T ss_pred EEEEEECCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHCCCCCC-CCCEEEHHHHHHC T ss_conf 089983668888999999779-98899997999999999999997299865147852110399999-8356768535765 Q ss_pred CHHHHHHHCCCCHHCCCCCEEEEEECCC Q ss_conf 2134432012100048521177630554 Q gi|254780624|r 153 MPHITLVLQEIYRILKCGGRLLVLEFSE 180 (265) Q Consensus 153 ~~d~~~~l~e~~RvLKpGG~~~i~df~~ 180 (265) T Consensus 80 i~D~~~~l~ei~RvLKPGG~lviaD~~~ 107 (224) T smart00828 80 IKDKMDLFSNISRHLKDGGHLVLADFIA 107 (224) T ss_pred CCCHHHHHHHHHHHCCCCEEEEEEEEEC T ss_conf 3999999999998717984999998533 |
|
| >pfam08241 Methyltransf_11 Methyltransferase domain | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.8e-21 Score=155.74 Aligned_cols=95 Identities=38% Similarity=0.610 Sum_probs=86.3 Q ss_pred EECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCH Q ss_conf 86023355777776641388632787213322221111000001122222222222333457554467403664201321 Q gi|254780624|r 75 LDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFGIRNMP 154 (265) Q Consensus 75 LDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~~~~ 154 (265) T Consensus 1 LDiGcG~G~~~~~l~~~--~~~~v~giD~s~~~i~~a~~~~~~----~~~~~~~~d~~~~~~~~~~fD~I~~~~~l~~~~ 74 (95) T pfam08241 1 LDVGCGTGLLTEALARL--PGAQVTGVDLSPEMLALARKRAQE----DGLTFVVGDAEDLPFPDESFDVVVSSLVLHHLP 74 (95) T ss_pred CCCCCCCCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHCCC----CCCEEEEECCCCCCCCCCCCCEEEECCCHHHCC T ss_conf 96462499999999845--799999994978998776631026----694799803324675545685999833066468 Q ss_pred HHHHHHCCCCHHCCCCCEEEE Q ss_conf 344320121000485211776 Q gi|254780624|r 155 HITLVLQEIYRILKCGGRLLV 175 (265) Q Consensus 155 d~~~~l~e~~RvLKpGG~~~i 175 (265) T Consensus 75 ~~~~~l~~~~r~LkpgG~l~i 95 (95) T pfam08241 75 DPERALREIARVLKPGGKLVI 95 (95) T ss_pred CHHHHHHHHHHHCCCCEEEEC T ss_conf 999999999987786949979 |
Members of this family are SAM dependent methyltransferases. |
| >pfam08242 Methyltransf_12 Methyltransferase domain | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.8e-20 Score=150.85 Aligned_cols=98 Identities=24% Similarity=0.332 Sum_probs=82.8 Q ss_pred EECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCH Q ss_conf 86023355777776641388632787213322221111000001122222222222333457554467403664201321 Q gi|254780624|r 75 LDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFGIRNMP 154 (265) Q Consensus 75 LDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~~~~ 154 (265) T Consensus 1 LDvGcG~G~~~~~l~~~~~-~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~vl~~~~ 79 (98) T pfam08242 1 LDIGCGTGTLLRALLEALP-GLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAIDLDPGSFDVVVASNVLHHLA 79 (98) T ss_pred CCCCCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHHCCCCCHHHEEECCCHHHCCCCCCCEEEECCCHHHCC T ss_conf 9886337999999998789-988999859889999999999871345311100000002220358988996104177258 Q ss_pred HHHHHHCCCCHHCCCCCEE Q ss_conf 3443201210004852117 Q gi|254780624|r 155 HITLVLQEIYRILKCGGRL 173 (265) Q Consensus 155 d~~~~l~e~~RvLKpGG~~ 173 (265) T Consensus 80 ~~~~~l~~~~r~LkpgG~l 98 (98) T pfam08242 80 DPRAVLRNLRRLLKPGGVL 98 (98) T ss_pred CHHHHHHHHHHHCCCCCCC T ss_conf 9999999999974999899 |
Members of this family are SAM dependent methyltransferases. |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.3e-19 Score=144.94 Aligned_cols=101 Identities=30% Similarity=0.439 Sum_probs=87.6 Q ss_pred EEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCC-CCCCCCCCCEEEEEEC Q ss_conf 798602335577777664138863278721332222111100000112222222222233345-7554467403664201 Q gi|254780624|r 73 RVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLP-FEANSFDACTLAFGIR 151 (265) Q Consensus 73 ~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp-~~d~sfD~V~~sf~l~ 151 (265) T Consensus 1 rVLDiGcG~G~~~~~l~~~~--~~~v~~iD~s~~~~~~a~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~fD~V~~~~~~~ 77 (107) T cd02440 1 RVLDLGCGTGALALALASGP--GARVTGVDISPVALELARKAAAALL-ADNVEVLKGDAEELPPEADESFDVIISDPPLH 77 (107) T ss_pred CEEEEECCCCHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHCC-CCCEEEECCCHHHCCHHHCCCEEEEEEECCEE T ss_conf 99999888799999999568--9889999898889999999875327-88646714886788632057531999917501 Q ss_pred CC-HHHHHHHCCCCHHCCCCCEEEEE Q ss_conf 32-13443201210004852117763 Q gi|254780624|r 152 NM-PHITLVLQEIYRILKCGGRLLVL 176 (265) Q Consensus 152 ~~-~d~~~~l~e~~RvLKpGG~~~i~ 176 (265) T Consensus 78 ~~~~~~~~~l~~~~~~LkpgG~~~is 103 (107) T cd02440 78 HLVEDLARFLEEARRLLKPGGVLVLT 103 (107) T ss_pred CCCCCHHHHHHHHHHHCCCCCEEEEE T ss_conf 06518999999999874858199999 |
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.1e-16 Score=121.75 Aligned_cols=107 Identities=26% Similarity=0.392 Sum_probs=81.3 Q ss_pred HHHHHHHCCC-CCCCCEEEECCHHHHHHHHHHHHHCCC--CCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCC Q ss_conf 9998520644-679977986023355777776641388--6327872133222211110000011222222222223334 Q gi|254780624|r 58 EAMVTNLNPR-KSKDYRVLDVAGGTGDVAFRIAEASDN--RSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETL 134 (265) Q Consensus 58 ~~~i~~l~~~-~~~~~~iLDiGcGTG~~~~~l~~~~~~--~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~l 134 (265) T Consensus 72 ~~i~~~~~~~~~~~~~~ilD~GCGEGyYl~~l~~~l~~~~~~~~~G~DiSK~ai~~Aak~------~~~~~~~Va~~~~l 145 (272) T PRK11088 72 DAVANLLAERLDEKATAILDIGCGEGYYTHALADALPEVTTCQLFGLDISKVAIKYAAKR------YPQVTFCVASSHRL 145 (272) T ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHCC------CCCCEEEEEECCCC T ss_conf 999999997567778648881587778999999974115787379981179999999626------88854999610018 Q ss_pred CCCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEE Q ss_conf 5755446740366420132134432012100048521177630 Q gi|254780624|r 135 PFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLE 177 (265) Q Consensus 135 p~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~d 177 (265) T Consensus 146 P~~d~s~D~vl~vFsP~-------~~~Ef~RvLkp~G~li~V~ 181 (272) T PRK11088 146 PFADQSLDAIIRIYAPC-------KAEELARVVKPGGIVITVT 181 (272) T ss_pred CCCCCCCEEEEEEECCC-------CHHHHHHEECCCCEEEEEE T ss_conf 88766540899984378-------8588612463797899997 |
|
| >pfam05175 MTS Methyltransferase small domain | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.7e-16 Score=122.24 Aligned_cols=114 Identities=21% Similarity=0.267 Sum_probs=90.0 Q ss_pred HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCC Q ss_conf 99985206446799779860233557777766413886327872133222211110000011222222222223334575 Q gi|254780624|r 58 EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFE 137 (265) Q Consensus 58 ~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~ 137 (265) T Consensus 21 ~lLl~~l~~~~~--g~vLDlGcG~G~i~~~la~~~-p~~~v~~vDi~~~Al~~a~~N~~~n~l-~~v~v~~~D~~~-~~~ 95 (170) T pfam05175 21 RLLLSHLPKPLG--GKVLDLGCGYGVLGAALAKRS-PDLEVTMVDINARALESARANLAANGL-ENGEVFWSDLYS-AVE 95 (170) T ss_pred HHHHHCCCCCCC--CCEEEECCCCCHHHHHHHHHC-CCCEEEECHHHHHHHHHHHHHHHHHCC-CEEEEEECCCCC-CCC T ss_conf 999970897789--949997764829899999978-986798515449999999999998099-848999744666-577 Q ss_pred CCCCCCCEEE--EEEC---CCHHHHHHHCCCCHHCCCCCEEEEE Q ss_conf 5446740366--4201---3213443201210004852117763 Q gi|254780624|r 138 ANSFDACTLA--FGIR---NMPHITLVLQEIYRILKCGGRLLVL 176 (265) Q Consensus 138 d~sfD~V~~s--f~l~---~~~d~~~~l~e~~RvLKpGG~~~i~ 176 (265) T Consensus 96 ~~~fD~IvsNPP~h~g~~~~~~~~~~~i~~A~~~L~pgG~l~~V 139 (170) T pfam05175 96 PGKFDLIISNPPFHAGKATDYDVAQRFIAGAARHLKPGGELWIV 139 (170) T ss_pred CCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEE T ss_conf 88660899897721142032899999999999961649799999 |
This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases . |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.8e-15 Score=115.42 Aligned_cols=113 Identities=19% Similarity=0.215 Sum_probs=91.2 Q ss_pred HHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 99852064467997798602335577777664138863278721332222111100000112222222222233345755 Q gi|254780624|r 59 AMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEA 138 (265) Q Consensus 59 ~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d 138 (265) T Consensus 21 ~~~~~~~~~--~~g~~LDlgcG~Grna~~La~~G---~~VtavD~s~~al~~~~~~a~~~~l-~~v~~~~~Dl~~~~~-~ 93 (198) T PRK11207 21 EVLEAVKVV--KPGRTLDLGCGNGRNSLYLAANG---YDVTAWDKNPMSIANLERIKAAENL-DNLHTRVVDLNNLTF-D 93 (198) T ss_pred HHHHHHCCC--CCCCEEEECCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHHCCC-CEEEEEEECCCCCCC-C T ss_conf 999873358--99747772478878699998689---8599997999999999999987599-824656203123887-7 Q ss_pred CCCCCCEEEEEECCCH--HHHHHHCCCCHHCCCCCEEEEEEC Q ss_conf 4467403664201321--344320121000485211776305 Q gi|254780624|r 139 NSFDACTLAFGIRNMP--HITLVLQEIYRILKCGGRLLVLEF 178 (265) Q Consensus 139 ~sfD~V~~sf~l~~~~--d~~~~l~e~~RvLKpGG~~~i~df 178 (265) T Consensus 94 ~~yDlIlstvv~~fl~p~~~p~iia~mq~~t~PGG~~LIV~~ 135 (198) T PRK11207 94 GEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAA 135 (198) T ss_pred CCCCEEEEEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEE T ss_conf 770589786452104866789999999996089948999997 |
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.4e-14 Score=110.35 Aligned_cols=115 Identities=21% Similarity=0.264 Sum_probs=93.4 Q ss_pred HHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC-CC Q ss_conf 99998520644679977986023355777776641388632787213322221111000001122222222222333-45 Q gi|254780624|r 57 KEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET-LP 135 (265) Q Consensus 57 r~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~-lp 135 (265) T Consensus 29 Ra~~l~~L~l~~~--~~vwDIGaGsGsvsiEaa~~~~~~~~V~aIE~~~e~~~~~~~N~~kfg~~~nv~~i~G~ap~~l~ 106 (198) T PRK00377 29 RALALSKLRLFKG--GKLVDVGCGTGSVSVEAALIVGEGGKVYAIDKDELAVELTKKNAEKFGVGDNVVLIEGEAPEVLP 106 (198) T ss_pred HHHHHHHHCCCCC--CEEEEECCCEEHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHH T ss_conf 9999997099998--99999177032999999996697875999967888999999999980999885999525488772 Q ss_pred CCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEE Q ss_conf 75544674036642013213443201210004852117763 Q gi|254780624|r 136 FEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVL 176 (265) Q Consensus 136 ~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~ 176 (265) T Consensus 107 ~l~p~pD~vFIGG~~---g~l~~il~~~~~~L~~gGriVin 144 (198) T PRK00377 107 KLNPKSDRYFIGGGG---EELPEIIQAALEKIGKGGRIVAD 144 (198) T ss_pred CCCCCCCEEEEECCC---CCHHHHHHHHHHHCCCCCEEEEE T ss_conf 089988989997887---77899999999857999899998 |
|
| >KOG3010 consensus | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.8e-14 Score=111.30 Aligned_cols=99 Identities=23% Similarity=0.304 Sum_probs=75.0 Q ss_pred EEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCC--CCCCCCCEEEEEE Q ss_conf 79860233557777766413886327872133222211110000011222222222223334575--5446740366420 Q gi|254780624|r 73 RVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFE--ANSFDACTLAFGI 150 (265) Q Consensus 73 ~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~--d~sfD~V~~sf~l 150 (265) T Consensus 36 ~a~DvG~G~Gqa~~~iae~~k---~VIatD~s~~mL~~a~k~~~~~y~--~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~ 110 (261) T KOG3010 36 LAWDVGTGNGQAARGIAEHYK---EVIATDVSEAMLKVAKKHPPVTYC--HTPSTMSSDEMVDLLGGEESVDLITAAQAV 110 (261) T ss_pred EEEEECCCCCCCHHHHHHHHH---HHEEECCCHHHHHHHHCCCCCCCC--CCCCCCCCCCCCCCCCCCCCEEEEHHHHHH T ss_conf 588845688711478887543---431306879999986118986204--578534566565323787641211054567 Q ss_pred CCCHHHHHHHCCCCHHCCCCC-EEEEEE Q ss_conf 132134432012100048521-177630 Q gi|254780624|r 151 RNMPHITLVLQEIYRILKCGG-RLLVLE 177 (265) Q Consensus 151 ~~~~d~~~~l~e~~RvLKpGG-~~~i~d 177 (265) T Consensus 111 H-WFdle~fy~~~~rvLRk~Gg~iavW~ 137 (261) T KOG3010 111 H-WFDLERFYKEAYRVLRKDGGLIAVWN 137 (261) T ss_pred H-HHCHHHHHHHHHHHCCCCCCEEEEEE T ss_conf 7-63429999999998077897799997 |
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.2e-13 Score=105.35 Aligned_cols=105 Identities=27% Similarity=0.378 Sum_probs=84.4 Q ss_pred CCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCC--CCCCCCCCCEEE Q ss_conf 997798602335577777664138863278721332222111100000112222222222233345--755446740366 Q gi|254780624|r 70 KDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLP--FEANSFDACTLA 147 (265) Q Consensus 70 ~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp--~~d~sfD~V~~s 147 (265) T Consensus 420 ~G~~ivdiG~GGGVMldli~E~~-p~~~i~GIDiS~NVIe~L~kkK~~e~k--sW~V~~gDAL~l~d~f~~eSvdTiv~s 496 (679) T PRK06922 420 KGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEGR--SWNVIKGDAINLSSSFEKESVDTIVYS 496 (679) T ss_pred CCCEEEEECCCCCHHHHHHHHHC-CCCCCEEEECCHHHHHHHHHHHHHCCC--CCEEECCCCCCCHHHCCCCCCCEEEEH T ss_conf 47679986699621487667658-998614666608899999887775489--842321430361543475666468742 Q ss_pred EEEC-------------CCHHHHHHHCCCCHHCCCCCEEEEEE Q ss_conf 4201-------------32134432012100048521177630 Q gi|254780624|r 148 FGIR-------------NMPHITLVLQEIYRILKCGGRLLVLE 177 (265) Q Consensus 148 f~l~-------------~~~d~~~~l~e~~RvLKpGG~~~i~d 177 (265) T Consensus 497 SIlHElfSYie~dGkkfN~~vi~~~l~Saf~vLkpGGRiIIRD 539 (679) T PRK06922 497 SILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 539 (679) T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEC T ss_conf 7788888634566713479999999999998728886499945 |
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.4e-12 Score=101.20 Aligned_cols=110 Identities=21% Similarity=0.254 Sum_probs=87.4 Q ss_pred HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCC Q ss_conf 99985206446799779860233557777766413886327872133222211110000011222222222223334575 Q gi|254780624|r 58 EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFE 137 (265) Q Consensus 58 ~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~ 137 (265) T Consensus 20 ai~LskL~l~~~--~vvwDIGaGsGsvsiEaa~~~p-~~~V~AvE~~~~~~~~i~~N~~~fg~-~nv~~i~g~Ap~-~l~ 94 (186) T PRK08287 20 ALSLSKLELHRA--KHLIDVGAGTGSVSIEAALQFP-SLQVTAIERNPAALRLIKENRQRFGC-GNIDIIPGEAPI-TLT 94 (186) T ss_pred HHHHHHCCCCCC--CEEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHHCC-CCEEEEECCCCH-HCC T ss_conf 999997199999--9999957887789999999789-98899993798999999998997299-987999377811-035 Q ss_pred CCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEE Q ss_conf 544674036642013213443201210004852117763 Q gi|254780624|r 138 ANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVL 176 (265) Q Consensus 138 d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~ 176 (265) T Consensus 95 ~-~pD~vFIGGsg---g~l~~il~~~~~~L~~gGriVin 129 (186) T PRK08287 95 G-KADAIFMGGSG---GHLTAIIDWALGHLHPGGRLVLN 129 (186) T ss_pred C-CCCEEEEECCC---CCHHHHHHHHHHHCCCCCEEEEE T ss_conf 7-89849997478---98899999999757999899998 |
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.7e-14 Score=109.35 Aligned_cols=109 Identities=22% Similarity=0.231 Sum_probs=91.2 Q ss_pred HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCC Q ss_conf 99985206446799779860233557777766413886327872133222211110000011222222222223334575 Q gi|254780624|r 58 EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFE 137 (265) Q Consensus 58 ~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~ 137 (265) T Consensus 20 ~dLla~Vp~~~~--~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~aDl~~w~-p 89 (257) T COG4106 20 RDLLARVPLERP--RRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQRL------PDATFEEADLRTWK-P 89 (257) T ss_pred HHHHHHCCCCCC--CEEEECCCCCCHHHHHHHHHC-CCCEEEECCCCHHHHHHHHHHC------CCCCEECCCHHHCC-C T ss_conf 899864786664--103455778877889999868-8886760469999999999748------99732105275449-9 Q ss_pred CCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEE Q ss_conf 544674036642013213443201210004852117763 Q gi|254780624|r 138 ANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVL 176 (265) Q Consensus 138 d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~ 176 (265) T Consensus 90 ~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQ 128 (257) T COG4106 90 EQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQ 128 (257) T ss_pred CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEE T ss_conf 876330334436644364089999999850888569997 |
|
| >pfam01135 PCMT Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.7e-13 Score=105.85 Aligned_cols=110 Identities=21% Similarity=0.300 Sum_probs=89.1 Q ss_pred HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCC Q ss_conf 99985206446799779860233557777766413886327872133222211110000011222222222223334575 Q gi|254780624|r 58 EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFE 137 (265) Q Consensus 58 ~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~ 137 (265) T Consensus 63 a~ml~~L~l~~g~--~VLeIGtGsGY~tAlLa~l~~~~g~V~~iE~~~~l~~~A~~~l~~~~~-~nV~~~~gdg~~g~~~ 139 (205) T pfam01135 63 AMMLELLELKPGM--RVLEIGSGSGYLTACFARMVGEVGRVVSIEHIPELVEIARRNLEKLGL-ENVIVVVGDGRQGWPE 139 (205) T ss_pred HHHHHHCCCCCCC--EEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCC-CCEEEEECCCCCCCCC T ss_conf 9999970789999--899966996599999999838787699983589999999999998488-8658984564558833 Q ss_pred CCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEE Q ss_conf 544674036642013213443201210004852117763 Q gi|254780624|r 138 ANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVL 176 (265) Q Consensus 138 d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~ 176 (265) T Consensus 140 ~apfD~Iiv~aa~~~iP---~~---l~~qL~~gGrLv~p 172 (205) T pfam01135 140 FAPYDAIHVGAAAPEIP---EA---LIDQLKEGGRLVIP 172 (205) T ss_pred CCCCCEEEEEEECCCCC---HH---HHHHCCCCCEEEEE T ss_conf 39805899975067688---99---99962879789999 |
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.2e-13 Score=106.45 Aligned_cols=119 Identities=21% Similarity=0.363 Sum_probs=88.3 Q ss_pred CCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCC-CCCCCCCCCCCCCE Q ss_conf 46799779860233557777766413886327872133222211110000011222222222223-33457554467403 Q gi|254780624|r 67 RKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANA-ETLPFEANSFDACT 145 (265) Q Consensus 67 ~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da-~~lp~~d~sfD~V~ 145 (265) T Consensus 132 ~~~~~~~ILDLGTGSGcIaISLa~e~-p~a~v~avDIS~~AL~vAk~Na~~~~v~~ri~fi~sdwfe~l--~~~kFDlIV 208 (503) T PRK01544 132 RNDKFLNILELGTGSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENI--GKQKFDFIV 208 (503) T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCHHCC--CCCCCCEEE T ss_conf 34557727884666799999999867-899899998989999999999998088201799965531015--888724798 Q ss_pred EE--EE-------E----CC-------------CHHHHHHHCCCCHHCCCCCEEEEEECCCCCCCHHHHH Q ss_conf 66--42-------0----13-------------2134432012100048521177630554455101123 Q gi|254780624|r 146 LA--FG-------I----RN-------------MPHITLVLQEIYRILKCGGRLLVLEFSEVQGPVFKKI 189 (265) Q Consensus 146 ~s--f~-------l----~~-------------~~d~~~~l~e~~RvLKpGG~~~i~df~~p~~~~~~~~ 189 (265) T Consensus 209 SNPPYI~~~e~~~L~~eV~~yEP~lAL~ggeDGL~~Yr~Ia~~a~~~Lkp~G~l~l-EIGy~Q~e~V~~I 277 (503) T PRK01544 209 SNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL-EIGFKQAEAVTQI 277 (503) T ss_pred ECCCCCCHHHHHHCCHHHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHCCCCCEEEE-EECCCHHHHHHHH T ss_conf 38998875666652766531693788648876289999999988985288988999-9787868999999 |
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.4e-12 Score=101.13 Aligned_cols=108 Identities=27% Similarity=0.410 Sum_probs=88.7 Q ss_pred HHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC-CCCC Q ss_conf 998520644679977986023355777776641388632787213322221111000001122222222222333-4575 Q gi|254780624|r 59 AMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET-LPFE 137 (265) Q Consensus 59 ~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~-lp~~ 137 (265) T Consensus 25 l~ls~L~~~~g--~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg-~~n~~vv~g~Ap~~L~~~ 100 (187) T COG2242 25 LTLSKLRPRPG--DRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFG-VDNLEVVEGDAPEALPDL 100 (187) T ss_pred HHHHHHCCCCC--CEEEEECCCCCHHHHHHH-HHCCCCEEEEEECCHHHHHHHHHHHHHHC-CCCEEEEECCCHHHHCCC T ss_conf 88986088999--989995788668999999-73988559999258889999999999849-996799954645763699 Q ss_pred CCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEE Q ss_conf 54467403664201321344320121000485211776 Q gi|254780624|r 138 ANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLV 175 (265) Q Consensus 138 d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i 175 (265) T Consensus 101 ~-~~daiFIGGg-~---~i~~ile~~~~~l~~ggrlV~ 133 (187) T COG2242 101 P-SPDAIFIGGG-G---NIEEILEAAWERLKPGGRLVA 133 (187) T ss_pred C-CCCEEEECCC-C---CHHHHHHHHHHHCCCCCEEEE T ss_conf 9-9999998798-7---778999999997186876999 |
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.3e-13 Score=104.54 Aligned_cols=110 Identities=17% Similarity=0.229 Sum_probs=90.3 Q ss_pred HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCC Q ss_conf 99985206446799779860233557777766413886327872133222211110000011222222222223334575 Q gi|254780624|r 58 EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFE 137 (265) Q Consensus 58 ~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~ 137 (265) T Consensus 66 a~ml~~L~l~~~~--~VLeIGtGsGY~tAlla~lvg~~g~V~siE~~~~l~~~A~~~l~~~~~-~nv~~~~gdg~~G~~~ 142 (214) T PRK13942 66 AIMCELLDLDEGQ--KVLEIGTGSGYHAAVVAEIVGKSGKVTTIERIPELAEKAKKNLKKLGY-ENVEVILGDGTKGYEE 142 (214) T ss_pred HHHHHHHCCCCCC--EEEEECCCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCC-CCEEEEECCCCCCCCC T ss_conf 9999972799999--799967995299999999747678579997179999999999986376-8758985675667844 Q ss_pred CCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEE Q ss_conf 544674036642013213443201210004852117763 Q gi|254780624|r 138 ANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVL 176 (265) Q Consensus 138 d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~ 176 (265) T Consensus 143 ~apfD~Iiv~aa~~~iP---~~---l~~qL~~gGrLV~P 175 (214) T PRK13942 143 NAPYDRIYVTAAGPDIP---KP---LLEQLKDGGIMVIP 175 (214) T ss_pred CCCCCEEEEEECCCCCC---HH---HHHHCCCCCEEEEE T ss_conf 59812799985176578---99---99962889589999 |
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.1e-13 Score=105.41 Aligned_cols=108 Identities=22% Similarity=0.337 Sum_probs=86.3 Q ss_pred CCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE-- Q ss_conf 997798602335577777664138863278721332222111100000112222222222233345755446740366-- Q gi|254780624|r 70 KDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLA-- 147 (265) Q Consensus 70 ~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~s-- 147 (265) T Consensus 133 ~~~rilDlGtGSG~Iaisla~~~p-~~~v~a~Dis~~AL~vA~~N~~~~~l~~rv~~~~~D~~~-~l~~~~fDlIvSNPP 210 (307) T PRK11805 133 QPTRILDLCTGSGCIAIACAYAFP-DAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRRYDLIVSNPP 210 (307) T ss_pred CCCEEEEECCCHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHH-CCCCCCCCEEEECCC T ss_conf 887277742782799999998789-988999858999999999999983887738998040221-268875077996799 Q ss_pred EE-----------ECC------------CHHHHHHHCCCCHHCCCCCEEEEEECCC Q ss_conf 42-----------013------------2134432012100048521177630554 Q gi|254780624|r 148 FG-----------IRN------------MPHITLVLQEIYRILKCGGRLLVLEFSE 180 (265) Q Consensus 148 f~-----------l~~------------~~d~~~~l~e~~RvLKpGG~~~i~df~~ 180 (265) T Consensus 211 YI~~~~~~~L~~ev~~EP~~AL~gG~DGLd~~r~i~~~A~~~L~pgG~L~~-EiG~ 265 (307) T PRK11805 211 YVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAADYLTEDGVLVC-EVGN 265 (307) T ss_pred CCCHHHHHHCCHHHCCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEE-EECC T ss_conf 788565633977531587888768924889999999988974476968999-9797 |
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.4e-12 Score=101.33 Aligned_cols=108 Identities=24% Similarity=0.322 Sum_probs=94.9 Q ss_pred HHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 98520644679977986023355777776641388632787213322221111000001122222222222333457554 Q gi|254780624|r 60 MVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEAN 139 (265) Q Consensus 60 ~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~ 139 (265) T Consensus 86 I~~~~gi~--pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~- 162 (256) T COG2519 86 IVARLGIS--PGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE- 162 (256) T ss_pred HHHHCCCC--CCCEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC- T ss_conf 99870999--887899815680599999999648884599999527899999999998424561378705400024655- Q ss_pred CCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEE Q ss_conf 467403664201321344320121000485211776 Q gi|254780624|r 140 SFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLV 175 (265) Q Consensus 140 sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i 175 (265) T Consensus 163 ~vDav~L-----Dmp~PW~~le~~~~~Lkpgg~~~~ 193 (256) T COG2519 163 DVDAVFL-----DLPDPWNVLEHVSDALKPGGVVVV 193 (256) T ss_pred CCCEEEE-----CCCCHHHHHHHHHHHHCCCCEEEE T ss_conf 4677997-----589848999999987179967999 |
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1e-12 Score=102.16 Aligned_cols=110 Identities=22% Similarity=0.319 Sum_probs=88.6 Q ss_pred HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCC Q ss_conf 99985206446799779860233557777766413886327872133222211110000011222222222223334575 Q gi|254780624|r 58 EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFE 137 (265) Q Consensus 58 ~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~ 137 (265) T Consensus 62 a~ml~~L~~~~~--~~VLeIGtGsGY~tAlla~l~~~~g~V~siE~~~~L~~~A~~~l~~l~~~n~v~v~~gdg~~G~~~ 139 (205) T PRK13944 62 AMMCELIEPRPG--MKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK 139 (205) T ss_pred HHHHHHHCCCCC--CEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCC T ss_conf 999997068999--989997898519999999983747717999536999999999999859863306797655657743 Q ss_pred CCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEE Q ss_conf 54467403664201321344320121000485211776 Q gi|254780624|r 138 ANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLV 175 (265) Q Consensus 138 d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i 175 (265) T Consensus 140 ~apfD~Iiv~aa~~~iP---~~---l~~QL~~gGrLV~ 171 (205) T PRK13944 140 HAPFDAIIVTAAASTIP---SA---LVRQLKDGGVLVI 171 (205) T ss_pred CCCCCEEEEEEECCCCC---HH---HHHHCCCCCEEEE T ss_conf 49804899985077689---99---9985487979999 |
|
| >pfam03848 TehB Tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.2e-12 Score=98.93 Aligned_cols=101 Identities=17% Similarity=0.213 Sum_probs=85.2 Q ss_pred CEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC Q ss_conf 77986023355777776641388632787213322221111000001122222222222333457554467403664201 Q gi|254780624|r 72 YRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFGIR 151 (265) Q Consensus 72 ~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~ 151 (265) T Consensus 32 gk~LDlgcG~GRNslyLa~~G---~~VtavD~n~~aL~~l~~ia~~e~l--~i~~~~~Din~~~~~e-~YD~IisTVvfm 105 (192) T pfam03848 32 GKALDLGCGQGRNSLFLSLLG---YDVTAVDHNENSIANLQDIKEKENL--DIPTALYDINSASIDE-NYDFILSTVVLM 105 (192) T ss_pred CCEEEECCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHHCCC--CCEEEEECCCCCCCCC-CCCEEEEEEEEE T ss_conf 746660478973189998689---9179997999999999999997099--7526873155568767-768798888777 Q ss_pred CC--HHHHHHHCCCCHHCCCCCEEEEEEC Q ss_conf 32--1344320121000485211776305 Q gi|254780624|r 152 NM--PHITLVLQEIYRILKCGGRLLVLEF 178 (265) Q Consensus 152 ~~--~d~~~~l~e~~RvLKpGG~~~i~df 178 (265) T Consensus 106 FL~~~~ip~iI~~mq~~T~pGGynlIv~a 134 (192) T pfam03848 106 FLQAERIPAIIANMQEHTNVGGYNLIVAA 134 (192) T ss_pred ECCHHHHHHHHHHHHHHCCCCCEEEEEEE T ss_conf 31867877999999985289988999976 |
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.8e-12 Score=98.46 Aligned_cols=110 Identities=21% Similarity=0.339 Sum_probs=87.4 Q ss_pred HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCC-CCC- Q ss_conf 999852064467997798602335577777664138863278721332222111100000112222222222233-345- Q gi|254780624|r 58 EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAE-TLP- 135 (265) Q Consensus 58 ~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~-~lp- 135 (265) T Consensus 30 a~~l~kL~l~~~--~~vwDIGaGtGsVsiEaa~~~-~~g~V~AIE~~~~a~~li~~N~~rfgv-~nv~ii~g~ape~L~~ 105 (196) T PRK07402 30 LLLISQLRLEPD--SVLWDIGAGTGTIPVEAALLC-PKGRVIAIERDEEVANLIRRNCDRFGV-KNVEVIEGSAPECLAQ 105 (196) T ss_pred HHHHHHHCCCCC--CEEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHHCC-CCEEEEECCCHHHHHH T ss_conf 999997089999--999994788779999999878-998899997688899999998997299-9879997263666840 Q ss_pred CCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEE Q ss_conf 75544674036642013213443201210004852117763 Q gi|254780624|r 136 FEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVL 176 (265) Q Consensus 136 ~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~ 176 (265) T Consensus 106 l~-p~pD~vFIGGg----~~l~~il~~~~~~L~pgGriVin 141 (196) T PRK07402 106 LA-PAPDRICIEGG----RPIKEILQAVWQYLKPGGRLVAT 141 (196) T ss_pred CC-CCCCEEEECCC----CCHHHHHHHHHHHCCCCCEEEEE T ss_conf 89-99999998489----68899999999867999899998 |
|
| >pfam08704 GCD14 tRNA methyltransferase complex GCD14 subunit | Back alignment and domain information |
|---|
Probab=99.28 E-value=2e-11 Score=93.76 Aligned_cols=110 Identities=19% Similarity=0.279 Sum_probs=93.8 Q ss_pred HHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCC- Q ss_conf 9985206446799779860233557777766413886327872133222211110000011222222222223334575- Q gi|254780624|r 59 AMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFE- 137 (265) Q Consensus 59 ~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~- 137 (265) T Consensus 93 ~I~~~ldi~PG--~~VlEaGtGSGsLT~~Laravgp~G~v~t~E~~e~r~~~A~~n~~~~g~~~~v~~~~rDv~~~gf~~ 170 (309) T pfam08704 93 LIIMMLELKPG--SVVCESGTGSGSLSHAIARTVAPTGHLYTFEFHEQRADKAREEFREHGLDSLVTVTHRDVCKSGFDT 170 (309) T ss_pred HHHHHHCCCCC--CEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHCCCCCC T ss_conf 99998098999--9999836784299999999748886599984478999999999987498750588985200136664 Q ss_pred --CCCCCCCEEEEEECCCHHHHHHHCCCCHHCC-CCCEEEE Q ss_conf --5446740366420132134432012100048-5211776 Q gi|254780624|r 138 --ANSFDACTLAFGIRNMPHITLVLQEIYRILK-CGGRLLV 175 (265) Q Consensus 138 --d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLK-pGG~~~i 175 (265) T Consensus 171 ~~~~~~D~VfL-----Dlp~PW~ai~~~~~~Lk~~Gg~l~~ 206 (309) T pfam08704 171 EVSNKADAVFL-----DLPAPWEAIPHAAKALKVEGGRLCS 206 (309) T ss_pred CCCCCCCEEEE-----CCCCHHHHHHHHHHHHCCCCCEEEE T ss_conf 45664358997-----5899799889999860689968999 |
GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA. |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; InterPro: IPR014008 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.8e-12 Score=96.09 Aligned_cols=114 Identities=21% Similarity=0.256 Sum_probs=91.3 Q ss_pred HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCC----- Q ss_conf 999852064467997798602335577777664138863278721332222111100000112222222222233----- Q gi|254780624|r 58 EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAE----- 132 (265) Q Consensus 58 ~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~----- 132 (265) T Consensus 9 ~l~L~~L~l~~~~-~v~wDIGaGtGS~~iE~~~~~p~~g~v~aiEr~~~~~~~~~~N~~~~c~~~~~~i~~g~ap~~~~~ 87 (135) T TIGR02469 9 ALTLAKLRLRPGD-SVLWDIGAGTGSVTIEAARLVPNSGRVYAIERNPEALRLIERNLRRFCGVSNIVIVEGDAPEELLN 87 (135) T ss_pred HHHHHHHCCCCCC-CEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCC T ss_conf 9999871789999-468896057483899999735986079998537689879999999828999632563556843336 Q ss_pred -CCCCC---CCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEE Q ss_conf -34575---54467403664201321344320121000485211776 Q gi|254780624|r 133 -TLPFE---ANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLV 175 (265) Q Consensus 133 -~lp~~---d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i 175 (265) T Consensus 88 ~~~~~~~~~~~~~Da~fvGGs~---~~~~~il~~~~~~l~~GGr~v~ 131 (135) T TIGR02469 88 SDAPEDSAKLPEPDAVFVGGSG---GKLEEILEAVERRLRPGGRIVL 131 (135) T ss_pred CCCCHHHCCCCCCCEEEECCCC---HHHHHHHHHHHHCCCCCCEEEE T ss_conf 7777100588746888883897---1789999999850596888888 |
Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CbiT subunit of precorrin-6Y C5,15-methyltransferase (2.1.1.132 from EC) from the anaerobic pathway, a bifunctional enzyme that catalyses two methylations (at C-5 and C-15) in precorrin-6Y, as well as the decarboxylation of the acetate side chain located in ring C, in order to generate precorrin-8X. In the anaerobic pathway, two enzymes are required to produce precorrin-8X: CbiE and CbiT, which can be fused as CbiET (sometimes called CobL) . In the aerobic pathway, the bifunctional enzyme is CobL .; GO: 0008276 protein methyltransferase activity, 0009236 cobalamin biosynthetic process. |
| >KOG1269 consensus | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.1e-12 Score=100.11 Aligned_cols=118 Identities=30% Similarity=0.375 Sum_probs=100.2 Q ss_pred HHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 98520644679977986023355777776641388632787213322221111000001122222222222333457554 Q gi|254780624|r 60 MVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEAN 139 (265) Q Consensus 60 ~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~ 139 (265) T Consensus 100 ~~~~l~~~~~~~~~~~~~~~g~~~~~~~i~~f~--~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn 177 (364) T KOG1269 100 GIVALRESCFPGSKVLDVGTGVGGPSRYIAVFK--KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDN 177 (364) T ss_pred CHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHC--CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEHHHHHCCCCCCC T ss_conf 168776327654111224767675167788862--577517876799999988777888764202352255514887746 Q ss_pred CCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEECC Q ss_conf 4674036642013213443201210004852117763055 Q gi|254780624|r 140 SFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLEFS 179 (265) Q Consensus 140 sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~df~ 179 (265) T Consensus 178 ~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i 217 (364) T KOG1269 178 TFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWI 217 (364) T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEHHHH T ss_conf 6674898761244786999999885036777168848888 |
|
| >KOG2940 consensus | Back alignment and domain information |
|---|
Probab=99.24 E-value=8e-12 Score=96.36 Aligned_cols=98 Identities=17% Similarity=0.247 Sum_probs=83.6 Q ss_pred EEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC Q ss_conf 79860233557777766413886327872133222211110000011222222222223334575544674036642013 Q gi|254780624|r 73 RVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFGIRN 152 (265) Q Consensus 73 ~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~~ 152 (265) T Consensus 75 ~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~~-~qdp~--i~~~~~v~DEE~Ldf~ens~DLiisSlslHW 149 (325) T KOG2940 75 TAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCRD-AQDPS--IETSYFVGDEEFLDFKENSVDLIISSLSLHW 149 (325) T ss_pred CEEECCCCHHHHHHHHHHCC--HHHEEEEECCHHHHHHHHC-CCCCC--EEEEEEECCHHCCCCCCCCHHHHHHHHHHHH T ss_conf 20440655446568877525--1340664041679997532-68985--3799972551015655350111265433456 Q ss_pred CHHHHHHHCCCCHHCCCCCEEEE Q ss_conf 21344320121000485211776 Q gi|254780624|r 153 MPHITLVLQEIYRILKCGGRLLV 175 (265) Q Consensus 153 ~~d~~~~l~e~~RvLKpGG~~~i 175 (265) T Consensus 150 ~NdLPg~m~~ck~~lKPDg~Fia 172 (325) T KOG2940 150 TNDLPGSMIQCKLALKPDGLFIA 172 (325) T ss_pred HCCCCHHHHHHHHHCCCCCCCHH T ss_conf 40483689998874289751216 |
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.1e-11 Score=95.41 Aligned_cols=107 Identities=17% Similarity=0.176 Sum_probs=85.3 Q ss_pred HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCC Q ss_conf 99985206446799779860233557777766413886327872133222211110000011222222222223334575 Q gi|254780624|r 58 EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFE 137 (265) Q Consensus 58 ~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~ 137 (265) T Consensus 68 A~ml~~L~l~~~--~~VLeIGtGsGY~tAlLa~l~---~~V~siE~~~~l~~~a~~~l~~~~~-~nv~~~~gdg~~g~~~ 141 (213) T PRK00312 68 ARMTELLELKPG--DRVLEIGTGSGYQAAVLAHLV---ERVFSVERIKTLQWQAKRRLKQLGL-HNVSVRHGDGWKGWPA 141 (213) T ss_pred HHHHHHHCCCCC--CEEEEECCCCCHHHHHHHHHC---CCEEEEECCHHHHHHHHHHHHHCCC-CCEEEEECCCCCCCCC T ss_conf 999998436899--759996598609999999862---9289994289999999999998499-8769996887667876 Q ss_pred CCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEE Q ss_conf 544674036642013213443201210004852117763 Q gi|254780624|r 138 ANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVL 176 (265) Q Consensus 138 d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~ 176 (265) T Consensus 142 ~~pfD~Iii~~a~~~~P--~----~l~~qL~~gGrLV~P 174 (213) T PRK00312 142 YAPFDRILVTAAAPEIP--R----ALLDQLAEGGILVAP 174 (213) T ss_pred CCCCCEEEEEECCHHHH--H----HHHHHCCCCCEEEEE T ss_conf 69724899984341225--9----999845329799999 |
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.5e-11 Score=94.64 Aligned_cols=109 Identities=19% Similarity=0.357 Sum_probs=86.7 Q ss_pred HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCC Q ss_conf 99985206446799779860233557777766413886327872133222211110000011222222222223334575 Q gi|254780624|r 58 EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFE 137 (265) Q Consensus 58 ~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~ 137 (265) T Consensus 65 A~MlElL~l~pg--~rVLEIGTGSGYqAAlLA~Lvg~~G~V~TIE~~~~L~~~Ar~~L~~lG~-~NV~vv~GDG~~G~pe 141 (317) T PRK13943 65 ALFMEWVGLDKG--MRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI-ENVIFVCGDGYYGVPE 141 (317) T ss_pred HHHHHHHCCCCC--CEEEEECCCCCHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHCCC-CCEEEEECCCCCCCCC T ss_conf 999997178999--8689965774389999999848787599998679999999999997799-8649997998888866 Q ss_pred CCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEE Q ss_conf 54467403664201321344320121000485211776 Q gi|254780624|r 138 ANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLV 175 (265) Q Consensus 138 d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i 175 (265) T Consensus 142 ~APYD~IIVTAaa~~IP---~a---LldQLk~GGRLVi 173 (317) T PRK13943 142 FSPYDVIFVTVGVDEVP---ET---WFTQLKEGGRVIV 173 (317) T ss_pred CCCCCEEEEEECCCCCC---HH---HHHHCCCCCEEEE T ss_conf 79977899985276489---99---9996185969999 |
|
| >pfam01170 UPF0020 Putative RNA methylase family UPF0020 | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.8e-11 Score=94.13 Aligned_cols=107 Identities=27% Similarity=0.332 Sum_probs=84.6 Q ss_pred HHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 99852064467997798602335577777664138863278721332222111100000112222222222233345755 Q gi|254780624|r 59 AMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEA 138 (265) Q Consensus 59 ~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d 138 (265) T Consensus 19 ~l~~la~~~~g--~~vlDP~CGSGtilIEAa~~~-~~~~~~G~Did~~~v~~A~~N~~~~g~~~~i~~~~~D~~~l~~~~ 95 (171) T pfam01170 19 AMVNLAGWKPG--DPLLDPFCGSGTILIEAALMG-ANVALYGSDIDRRMVRGARINAEAAGVGDKIEFVQADAADLPLLN 95 (171) T ss_pred HHHHHHCCCCC--CEEEECCCCCCHHHHHHHHHH-CCCCCEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCCC T ss_conf 99998589999--978868998789999999961-358953675879999999999998289984699976665387987 Q ss_pred CCCCCCEE--EEEECCC------HHHHHHHCCCCHHCC Q ss_conf 44674036--6420132------134432012100048 Q gi|254780624|r 139 NSFDACTL--AFGIRNM------PHITLVLQEIYRILK 168 (265) Q Consensus 139 ~sfD~V~~--sf~l~~~------~d~~~~l~e~~RvLK 168 (265) T Consensus 96 ~~~d~Iv~nPPYG~r~~~~~~~~~ly~~~~~~~~~~~~ 133 (171) T pfam01170 96 GSVDTIVTDPPYGIRIGSKGALEKLYPAFLDEAKRVLR 133 (171) T ss_pred CCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCC T ss_conf 88318998898201136545699999999999998689 |
This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains. |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=8.9e-11 Score=89.61 Aligned_cols=112 Identities=21% Similarity=0.404 Sum_probs=83.0 Q ss_pred HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCC Q ss_conf 99985206446799779860233557777766413886327872133222211110000011222222222223334575 Q gi|254780624|r 58 EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFE 137 (265) Q Consensus 58 ~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~ 137 (265) T Consensus 186 ~lLL~~l~~~~--~g~VLDlGCG~Gvi~~~la~~~-p~~~v~l~Dv~a~Al~~ar~nl~~N~l~~--~v~~sd~~~-~v- 258 (342) T PRK09489 186 QLLLSTLTPHT--KGKVLDVGCGAGVLSAVLAQHS-PKIRLTLCDVSAPAVEASRATLAANGLEG--EVFASNVFS-EI- 258 (342) T ss_pred HHHHHHCCCCC--CCCEEEECCCHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHHCCCC--EEEECCCCC-CC- T ss_conf 99997378324--8847860678179999999869-99769999688999999999899809886--899756445-65- Q ss_pred CCCCCCCEEE--E--EECC-CHHHHHHHCCCCHHCCCCCEEEEE Q ss_conf 5446740366--4--2013-213443201210004852117763 Q gi|254780624|r 138 ANSFDACTLA--F--GIRN-MPHITLVLQEIYRILKCGGRLLVL 176 (265) Q Consensus 138 d~sfD~V~~s--f--~l~~-~~d~~~~l~e~~RvLKpGG~~~i~ 176 (265) T Consensus 259 ~~~fD~IvsNPPFH~G~~~~~~i~~~fi~~A~~~L~~gG~L~iV 302 (342) T PRK09489 259 KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIV 302 (342) T ss_pred CCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE T ss_conf 56789899688521575265899999999999861249889999 |
|
| >pfam01596 Methyltransf_3 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.4e-11 Score=90.51 Aligned_cols=102 Identities=22% Similarity=0.280 Sum_probs=85.6 Q ss_pred CCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC-CC-C----CCCCCCCC Q ss_conf 977986023355777776641388632787213322221111000001122222222222333-45-7----55446740 Q gi|254780624|r 71 DYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET-LP-F----EANSFDAC 144 (265) Q Consensus 71 ~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~-lp-~----~d~sfD~V 144 (265) T Consensus 45 ak~iLEiGT~~GySal~lA~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gdA~~~l~~l~~~~~~~~fD~v 124 (204) T pfam01596 45 AKRTLEIGVFTGYSLLATALALPEDGKITACDIDREAYEIGLPFIQKAGVADKIEFRVGDALKTLEQLVEDKPLGEFDFA 124 (204) T ss_pred CCEEEEEECCCCHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHCCCCCCCCEE T ss_conf 87899983432599999998489996899998048999999999997798744799987499999999844777764389 Q ss_pred EEEEEECCCHHHHHHHCCCCHHCCCCCEEEE Q ss_conf 3664201321344320121000485211776 Q gi|254780624|r 145 TLAFGIRNMPHITLVLQEIYRILKCGGRLLV 175 (265) Q Consensus 145 ~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i 175 (265) T Consensus 125 FiD-a--dK~~Y~~y~e~~~~lL~~gGiii~ 152 (204) T pfam01596 125 FVD-A--DKSSYPNYYERLLELVKVGGLIAI 152 (204) T ss_pred EEE-C--CHHHHHHHHHHHHHHHCCCEEEEE T ss_conf 981-8--887779999999986369809999 |
Members of this family are O-methyltransferases. The family includes catechol o-methyltransferase, caffeoyl-CoA O-methyltransferase, and a family of bacterial O-methyltransferases that may be involved in antibiotic production. |
| >pfam00891 Methyltransf_2 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.4e-09 Score=81.92 Aligned_cols=104 Identities=24% Similarity=0.363 Sum_probs=84.0 Q ss_pred CCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE Q ss_conf 79977986023355777776641388632787213322221111000001122222222222333457554467403664 Q gi|254780624|r 69 SKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAF 148 (265) Q Consensus 69 ~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf 148 (265) T Consensus 100 ~~~~~vvDvGGG~G~~~~~i~~~~P-~l~~~v~Dl-p~v~~~a~~-------~~rv~~~~gdff~-~~P~--aD~y~l~~ 167 (239) T pfam00891 100 SGLSSLVDVGGGTGALAAAIVRAYP-HIKGIVFDL-PHVIADAPS-------ADRVEFVGGDFFE-SVPE--ADAILLKW 167 (239) T ss_pred CCCCEEEEECCCCHHHHHHHHHHCC-CCEEEEEEC-HHHHHHCCC-------CCCEEEECCCCCC-CCCC--CCEEEEEH T ss_conf 6787689967981899999999889-983898646-877862764-------6854884487777-8888--51776401 Q ss_pred EECCCHHH--HHHHCCCCHHCCCCCEEEEEECCCCCCC Q ss_conf 20132134--4320121000485211776305544551 Q gi|254780624|r 149 GIRNMPHI--TLVLQEIYRILKCGGRLLVLEFSEVQGP 184 (265) Q Consensus 149 ~l~~~~d~--~~~l~e~~RvLKpGG~~~i~df~~p~~~ 184 (265) T Consensus 168 vLH~w~d~~~~~iL~~~~~al~~~grllI~e~v~~~~~ 205 (239) T pfam00891 168 VLHDWSDEDCVKILKRCYEALPPGGKVIVVEMVLPEDP 205 (239) T ss_pred HHCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCC T ss_conf 43159999999999999997799988999974457999 |
This family includes a range of O-methyltransferases. These enzymes utilize S-adenosyl methionine. |
| >pfam02390 Methyltransf_4 Putative methyltransferase | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.2e-10 Score=88.85 Aligned_cols=98 Identities=20% Similarity=0.289 Sum_probs=80.9 Q ss_pred EEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC-CC--CCCCCCCCCEEEEE Q ss_conf 7986023355777776641388632787213322221111000001122222222222333-45--75544674036642 Q gi|254780624|r 73 RVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET-LP--FEANSFDACTLAFG 149 (265) Q Consensus 73 ~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~-lp--~~d~sfD~V~~sf~ 149 (265) T Consensus 23 i~lEIG~G~G~~l~~~A~~~p-~~n~iGiEi~~~~v~~~~~k~~~~~~l~Ni~~~~~da~~~l~~~~~~~~l~~i~i~-- 99 (199) T pfam02390 23 LFLEIGCGMGDFLVAMAKKNP-DKLFIGIEIRVPGVDKALKKIIALRGLQNLRILCGDAMKLLPNLFPDGSLQKIFIN-- 99 (199) T ss_pred EEEEECCCCCHHHHHHHHHCC-CCCEEEEEECHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHCCCCCEEEEEEE-- T ss_conf 499973688899999999789-98789999505999999999998457773787604799999975798864279996-- Q ss_pred ECCCHHH-------------HHHHCCCCHHCCCCCEEEEE Q ss_conf 0132134-------------43201210004852117763 Q gi|254780624|r 150 IRNMPHI-------------TLVLQEIYRILKCGGRLLVL 176 (265) Q Consensus 150 l~~~~d~-------------~~~l~e~~RvLKpGG~~~i~ 176 (265) T Consensus 100 ---FPDPWpKkrH~KRRli~~~fl~~~~~~Lk~gG~l~~~ 136 (199) T pfam02390 100 ---FPDPWPKKRHHKRRLLQPEFLKEYARVLKPGGVLHLA 136 (199) T ss_pred ---CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEE T ss_conf ---7999876442440007999999999963889899998 |
This is a family of putative methyltransferases. The aligned region contains the GXGXG S-AdoMet binding site suggesting a putative methyltransferase activity. |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.03 E-value=4e-10 Score=85.38 Aligned_cols=108 Identities=21% Similarity=0.256 Sum_probs=84.0 Q ss_pred HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCC Q ss_conf 99985206446799779860233557777766413886327872133222211110000011222222222223334575 Q gi|254780624|r 58 EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFE 137 (265) Q Consensus 58 ~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~ 137 (265) T Consensus 62 A~m~~~L~~~~g--~~VLEIGtGsGY~aAvla~l~~---~V~siEr~~~L~~~A~~~L~~lg~~-nV~v~~gDG~~G~~~ 135 (209) T COG2518 62 ARMLQLLELKPG--DRVLEIGTGSGYQAAVLARLVG---RVVSIERIEELAEQARRNLETLGYE-NVTVRHGDGSKGWPE 135 (209) T ss_pred HHHHHHHCCCCC--CEEEEECCCCHHHHHHHHHHHC---EEEEEEECHHHHHHHHHHHHHCCCC-CEEEEECCCCCCCCC T ss_conf 999997489999--8688877783099999999748---4999997199999999999976987-349997885568877 Q ss_pred CCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEEE Q ss_conf 5446740366420132134432012100048521177630 Q gi|254780624|r 138 ANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVLE 177 (265) Q Consensus 138 d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~d 177 (265) T Consensus 136 ~aPyD~I~Vtaa---a~~vP~~L---l~QL~~gGrlv~Pv 169 (209) T COG2518 136 EAPYDRIIVTAA---APEVPEAL---LDQLKPGGRLVIPV 169 (209) T ss_pred CCCCCEEEEEEC---CCCCCHHH---HHHCCCCCEEEEEE T ss_conf 798478999503---57799899---98506598899998 |
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.5e-10 Score=88.07 Aligned_cols=98 Identities=18% Similarity=0.258 Sum_probs=83.2 Q ss_pred CEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCC-C--CCCCCCCCCEEEE Q ss_conf 779860233557777766413886327872133222211110000011222222222223334-5--7554467403664 Q gi|254780624|r 72 YRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETL-P--FEANSFDACTLAF 148 (265) Q Consensus 72 ~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~l-p--~~d~sfD~V~~sf 148 (265) T Consensus 56 p~~lEIGfG~G~~l~~~A~~~P-~~~fIGiE~~~~gv~~~~~~~~~~~l-~Ni~i~~~da~~~l~~~~~~~s~~~i~i~- 132 (229) T PRK00121 56 PIHLEIGFGRGEFLVEMAKANP-DINFIGIEIHEPGVAKALKKIEEAGL-KNLRLLCGDAVEVLEHFLPDGSLDRIYLN- 132 (229) T ss_pred CEEEEECCCCCHHHHHHHHHCC-CCCEEEEEEEHHHHHHHHHHHHHCCC-CCEEEEECCHHHHHHHHCCCCCCCEEEEC- T ss_conf 4399961589699999998688-88689999616999999999998299-83898834789999971464541404671- Q ss_pred EECCCHHH-------------HHHHCCCCHHCCCCCEEEEE Q ss_conf 20132134-------------43201210004852117763 Q gi|254780624|r 149 GIRNMPHI-------------TLVLQEIYRILKCGGRLLVL 176 (265) Q Consensus 149 ~l~~~~d~-------------~~~l~e~~RvLKpGG~~~i~ 176 (265) T Consensus 133 ----FPDPWpKkrH~KRRli~~~fl~~~~~~Lk~~G~i~~~ 169 (229) T PRK00121 133 ----FPDPWPKKRHHKRRLVQPEFLELYARVLKPGGEFHFA 169 (229) T ss_pred ----CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEE T ss_conf ----7999976320240128999999999857999889998 |
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.4e-10 Score=85.87 Aligned_cols=105 Identities=18% Similarity=0.281 Sum_probs=88.0 Q ss_pred CCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCC-CCCCC-CC-CCCCCCCCCEE Q ss_conf 99779860233557777766413886327872133222211110000011222222222-22333-45-75544674036 Q gi|254780624|r 70 KDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIE-ANAET-LP-FEANSFDACTL 146 (265) Q Consensus 70 ~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~-~da~~-lp-~~d~sfD~V~~ 146 (265) T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFI 138 (219) T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFI 138 (219) T ss_pred CCCEEEEEECCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHCCCCCCCEEEE T ss_conf 98649996352379999999638889769997079899999999999759765289883574799997334788568998 Q ss_pred EEEECCCHHHHHHHCCCCHHCCCCCEEEEEE Q ss_conf 6420132134432012100048521177630 Q gi|254780624|r 147 AFGIRNMPHITLVLQEIYRILKCGGRLLVLE 177 (265) Q Consensus 147 sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~d 177 (265) T Consensus 139 Da---dK~~yp~~le~~~~lLr~GGliv~DN 166 (219) T COG4122 139 DA---DKADYPEYLERALPLLRPGGLIVADN 166 (219) T ss_pred EC---CHHHCHHHHHHHHHHHCCCCEEEEEE T ss_conf 37---84359999999999737896899830 |
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.99 E-value=6.3e-10 Score=84.13 Aligned_cols=113 Identities=20% Similarity=0.323 Sum_probs=83.2 Q ss_pred HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCC Q ss_conf 99985206446799779860233557777766413886327872133222211110000011222222222223334575 Q gi|254780624|r 58 EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFE 137 (265) Q Consensus 58 ~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~ 137 (265) T Consensus 148 ~lLl~~l~~~~~~--~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~N~~~-~~~v~~s~~-~~~v~ 222 (300) T COG2813 148 RLLLETLPPDLGG--KVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAANGVE-NTEVWASNL-YEPVE 222 (300) T ss_pred HHHHHHCCCCCCC--CEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHCCCC-CCEEEEECC-CCCCC T ss_conf 9999737755699--688707884299999998689-872899826699999988769973987-637998124-46654 Q ss_pred CCCCCCCEEEEEECC---CH-H-HHHHHCCCCHHCCCCCEEEEE Q ss_conf 544674036642013---21-3-443201210004852117763 Q gi|254780624|r 138 ANSFDACTLAFGIRN---MP-H-ITLVLQEIYRILKCGGRLLVL 176 (265) Q Consensus 138 d~sfD~V~~sf~l~~---~~-d-~~~~l~e~~RvLKpGG~~~i~ 176 (265) T Consensus 223 ~-kfd~IisNPPfh~G~~v~~~~~~~ii~~A~~~L~~gGeL~iV 265 (300) T COG2813 223 G-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIV 265 (300) T ss_pred C-CCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEE T ss_conf 4-006898488846771016788999999999760459779999 |
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=7.2e-10 Score=83.76 Aligned_cols=96 Identities=19% Similarity=0.236 Sum_probs=81.2 Q ss_pred EEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCC--C-CCCCCCCCCEEEEE Q ss_conf 79860233557777766413886327872133222211110000011222222222223334--5-75544674036642 Q gi|254780624|r 73 RVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETL--P-FEANSFDACTLAFG 149 (265) Q Consensus 73 ~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~l--p-~~d~sfD~V~~sf~ 149 (265) T Consensus 51 i~lEIGfG~G~~l~~~A~~nP-~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~i~-- 126 (227) T COG0220 51 IVLEIGFGMGEFLVEMAKKNP-EKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIPDGSLDKIYIN-- 126 (227) T ss_pred EEEEECCCCCHHHHHHHHHCC-CCCEEEEEEEHHHHHHHHHHHHHCCCC-CEEEEECCHHHHHHHCCCCCCEEEEEEE-- T ss_conf 699968889878999998789-877899997348999999999982998-4699807799999735898856579997-- Q ss_pred ECCCHHH-------------HHHHCCCCHHCCCCCEEEE Q ss_conf 0132134-------------4320121000485211776 Q gi|254780624|r 150 IRNMPHI-------------TLVLQEIYRILKCGGRLLV 175 (265) Q Consensus 150 l~~~~d~-------------~~~l~e~~RvLKpGG~~~i 175 (265) T Consensus 127 ---FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~ 162 (227) T COG0220 127 ---FPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHF 162 (227) T ss_pred ---CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEE T ss_conf ---999998766433214788999999997268978999 |
|
| >pfam02475 Met_10 Met-10+ like-protein | Back alignment and domain information |
|---|
Probab=98.94 E-value=7.7e-10 Score=83.58 Aligned_cols=108 Identities=17% Similarity=0.238 Sum_probs=86.6 Q ss_pred HHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCC Q ss_conf 99998520644679977986023355777776641388632787213322221111000001122222222222333457 Q gi|254780624|r 57 KEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPF 136 (265) Q Consensus 57 r~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~ 136 (265) T Consensus 91 r~ri~~~~~----~ge~VlD~faGvG~f~l~~ak~~-~~~~V~a~DlNp~a~~~l~~N~~lN~v~~~i~~~~gD~~~~~- 164 (199) T pfam02475 91 RERIAKLVK----EGEVVVDMFAGIGPFSIPIAKHS-KAKRVYAVELNPEAVKYLKENIKLNKVEGVISPILGDVRDVI- 164 (199) T ss_pred HHHHHHHCC----CCCEEEECCCCCCHHHHHHHHCC-CCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHC- T ss_conf 999997448----99889981688657789986407-864899982899999999999998099983699928787860- Q ss_pred CCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEE Q ss_conf 55446740366420132134432012100048521177 Q gi|254780624|r 137 EANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLL 174 (265) Q Consensus 137 ~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~ 174 (265) T Consensus 165 ~~~~~Drvimnl----P~~a~~fL~~A~~~lk~gg~iH 198 (199) T pfam02475 165 LEGVADRVIMNL----PKSAHEFLDKALRAVKDGGVIH 198 (199) T ss_pred CCCCCCEEEECC----CCCHHHHHHHHHHHHCCCCEEE T ss_conf 467400999489----7316999999999855898983 |
The methionine-10 mutant allele of N. crassa codes for a protein of unknown function. However, homologous proteins have been found in yeast suggesting this protein may be involved in methionine biosynthesis, transport and/or utilisation. |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1e-09 Score=82.72 Aligned_cols=108 Identities=19% Similarity=0.214 Sum_probs=85.4 Q ss_pred CCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE Q ss_conf 97798602335577777664138863278721332222111100000112222222222233345755446740366420 Q gi|254780624|r 71 DYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFGI 150 (265) Q Consensus 71 ~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l 150 (265) T Consensus 123 pgkaLDLGCG~GRNsLyLa~~G---fdVTA~D~N~~sl~~L~~ia~~E~L--~i~~~~yDIN~a~l~~-~YDfI~STVV~ 196 (289) T PRK12335 123 PGKALDLGCGQGRNSLYLALLG---FDVTAVDINQASLENLQQIAEKENL--NIRAGSYDINSASLQE-EYDFILSTVVL 196 (289) T ss_pred CCCEEEECCCCCCCHHHHHHCC---CCEEEEECCHHHHHHHHHHHHHCCC--CCCCEEECCCCCCCCC-CCCEEEEEEEE T ss_conf 8746660478882278897579---8425886899999999999997198--8772575166666677-76789996788 Q ss_pred CCC--HHHHHHHCCCCHHCCCCCEEEEEE-CCCCCCC Q ss_conf 132--134432012100048521177630-5544551 Q gi|254780624|r 151 RNM--PHITLVLQEIYRILKCGGRLLVLE-FSEVQGP 184 (265) Q Consensus 151 ~~~--~d~~~~l~e~~RvLKpGG~~~i~d-f~~p~~~ 184 (265) T Consensus 197 mFL~~~~ip~iI~nMQ~~T~~gGyNlIV~am~T~d~p 233 (289) T PRK12335 197 MFLNPERIPDIIKNMQEHTNPGGYNLIVCAMDTEDYP 233 (289) T ss_pred EEECHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCC T ss_conf 6428778699999999844799868999871477788 |
|
| >KOG1499 consensus | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.3e-09 Score=80.55 Aligned_cols=102 Identities=25% Similarity=0.309 Sum_probs=76.4 Q ss_pred CCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE--- Q ss_conf 99779860233557777766413886327872133222211110000011222222222223334575544674036--- Q gi|254780624|r 70 KDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTL--- 146 (265) Q Consensus 70 ~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~--- 146 (265) T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA--~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWM 136 (346) T KOG1499 60 KDKTVLDVGCGTGILSMFAAKAGA--RKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWM 136 (346) T ss_pred CCCEEEECCCCCCHHHHHHHHHCC--CEEEEEECHHHH-HHHHHHHHHCCCCCEEEEEECCEEEEECCCCCEEEEEEHHH T ss_conf 797899757881288999887375--339999626899-99999998568660599950305787647554029963012 Q ss_pred EEEECCCHHHHHHHCCCCHHCCCCCEEE Q ss_conf 6420132134432012100048521177 Q gi|254780624|r 147 AFGIRNMPHITLVLQEIYRILKCGGRLL 174 (265) Q Consensus 147 sf~l~~~~d~~~~l~e~~RvLKpGG~~~ 174 (265) T Consensus 137 Gy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346) T KOG1499 137 GYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346) T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCEEC T ss_conf 4787776566645533330047795576 |
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.3e-09 Score=79.53 Aligned_cols=112 Identities=29% Similarity=0.424 Sum_probs=83.0 Q ss_pred HHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCC--C Q ss_conf 99852064467997798602335577777664138863278721332222111100000112222222222233345--7 Q gi|254780624|r 59 AMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLP--F 136 (265) Q Consensus 59 ~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp--~ 136 (265) T Consensus 236 l~~~ll~p~~g--~~VLD~CAaPGGKt~~la~~~-~~~~v~A~D~~~~Rl~~l~~n~~Rlg~~--~~v~~~d~~~~~~~~ 310 (428) T PRK10901 236 GCVTLLAPQNG--EHILDLCAAPGGKTTHILEVA-PEAQVLAVDIDEQRLSRVYDNLKRLGMK--ATVKQGDGRYPSQWC 310 (428) T ss_pred HHHHHCCCCCC--CEEEEECCCCCHHHHHHHHHC-CCCCEEEEECCHHHHHHHHHHHHHCCCC--EEEEECCCCCHHHHC T ss_conf 89986498889--879871688766899999964-5892899969888999999999975997--399977655723313 Q ss_pred CCCCCCCCEE-----EEE-ECCCHHH----------------HHHHCCCCHHCCCCCEEEE Q ss_conf 5544674036-----642-0132134----------------4320121000485211776 Q gi|254780624|r 137 EANSFDACTL-----AFG-IRNMPHI----------------TLVLQEIYRILKCGGRLLV 175 (265) Q Consensus 137 ~d~sfD~V~~-----sf~-l~~~~d~----------------~~~l~e~~RvLKpGG~~~i 175 (265) T Consensus 311 ~~~~fD~ILlDaPCSg~G~lrR~Pdikw~~~~~di~~l~~lQ~~iL~~a~~~lk~gG~LvY 371 (428) T PRK10901 311 GEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQSEILDAIWPHLKSGGTLVY 371 (428) T ss_pred CCCCCCEEEECCCCCCCEEECCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE T ss_conf 4456787997589888724446854211289999999999999999999986688988999 |
|
| >TIGR00091 TIGR00091 tRNA (guanine-N(7)-)-methyltransferase; InterPro: IPR004395 This predicted S-adenosylmethionine-dependent methyltransferase is found in a single copy in most Bacteria | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.8e-09 Score=81.13 Aligned_cols=98 Identities=22% Similarity=0.357 Sum_probs=81.8 Q ss_pred CEEEECCHHHHHHHHHHHHHCCCCCEEEEECC--------CCCCCCCCCCCHHCCCCC-CCCCCCCCCCCCCC---CCCC Q ss_conf 77986023355777776641388632787213--------322221111000001122-22222222233345---7554 Q gi|254780624|r 72 YRVLDVAGGTGDVAFRIAEASDNRSQIVVADI--------NNEMLSVGRDRAFKENLQ-DCITFIEANAETLP---FEAN 139 (265) Q Consensus 72 ~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~--------s~~Ml~~a~~r~~~~~~~-~~i~~~~~da~~lp---~~d~ 139 (265) T Consensus 21 p~~~EIGcG~G~fl~~~A~~nP-~~~flGIE~RvqvtnYv~~p~v~~a~~~~~~~g~~~~Nl~~L~~DA~~l~~~~~~~~ 99 (216) T TIGR00091 21 PLVLEIGCGKGRFLIKMAKQNP-DKNFLGIEIRVQVTNYVETPIVLKAINKANKLGLKLRNLHVLCGDANELLEKFFPDG 99 (216) T ss_pred CEEEEECCCCCCCHHHHHHHCC-CCCEEEEEEEEEEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHCCC T ss_conf 4489841687602689977279-972777899988741022728998875576617844213522136023204540078 Q ss_pred --CCCCCEEEEEECCCHHH-------------HHHHCCCCHHCCCCCEEEE Q ss_conf --46740366420132134-------------4320121000485211776 Q gi|254780624|r 140 --SFDACTLAFGIRNMPHI-------------TLVLQEIYRILKCGGRLLV 175 (265) Q Consensus 140 --sfD~V~~sf~l~~~~d~-------------~~~l~e~~RvLKpGG~~~i 175 (265) T Consensus 100 PP~l~k~f~-----~FPDPW~KkRH~KRR~~~~~Fl~~~~~~L~~~G~i~~ 145 (216) T TIGR00091 100 PPSLSKVFL-----NFPDPWPKKRHNKRRITQPHFLKEVANVLKKGGVIEL 145 (216) T ss_pred CCCEEEEEE-----ECCCCCHHHHHCCCCCCCHHHHHHHHHHCCCCCEEEE T ss_conf 980456888-----7788951021022342567899999997045968999 |
It is also found, with a short amino-terminal extension in eukaryotes. Its function is unknown. In Escherichia coli, this protein flanks the DNA repair protein MutY, also called micA.; GO: 0008168 methyltransferase activity. |
| >pfam09243 Rsm22 Mitochondrial small ribosomal subunit Rsm22 | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.6e-08 Score=73.68 Aligned_cols=110 Identities=15% Similarity=0.207 Sum_probs=76.6 Q ss_pred CCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE Q ss_conf 97798602335577777664138863278721332222111100000112222222222233345755446740366420 Q gi|254780624|r 71 DYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTLAFGI 150 (265) Q Consensus 71 ~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l 150 (265) T Consensus 35 P~slLD~GsGpGt~~wAa~~~w~~l~~~~~vd~s~~m~~l~~~L~~~~~~~~~~~-~~~~~~~~~~~~~~~DLVi~sy~L 113 (275) T pfam09243 35 PLSHLDVGAGPGTALWAASELWPGLEPATVIDASEAALAIGEELARHIPALKHAW-RARDVIGAALDFEPADLVTISYVL 113 (275) T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCE-ECCCCCCCCCCCCCCCEEEEECHH T ss_conf 8757772775799999999884247689997489999999999985184345431-114310112458987889961422 Q ss_pred CCCH--HHHHHHCCCCHHCCCCCEEEEEECCCCCC Q ss_conf 1321--34432012100048521177630554455 Q gi|254780624|r 151 RNMP--HITLVLQEIYRILKCGGRLLVLEFSEVQG 183 (265) Q Consensus 151 ~~~~--d~~~~l~e~~RvLKpGG~~~i~df~~p~~ 183 (265) T Consensus 114 ~El~~~~R~~~v~~LW~~~--~g~LVlVEpGtp~G 146 (275) T pfam09243 114 DELTPASREKVIDNLWAKA--AQALVIVEPGTPAG 146 (275) T ss_pred CCCCHHHHHHHHHHHHHHC--CCEEEEEECCCHHH T ss_conf 0799789999999999953--99799991898179 |
Rsm22 has been identified as a mitochondrial small ribosomal subunit and is a methyltransferase. In Schizosaccharomyces pombe, Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria. |
| >TIGR00477 tehB tellurite resistance protein TehB; InterPro: IPR004537 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.6e-09 Score=79.23 Aligned_cols=117 Identities=17% Similarity=0.226 Sum_probs=85.6 Q ss_pred HHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 99852064467997798602335577777664138863278721332222111100000112222222222233345755 Q gi|254780624|r 59 AMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEA 138 (265) Q Consensus 59 ~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d 138 (265) T Consensus 67 eAvk~v~P-----cKtLDLGCGqGrNsLyLsl~G---YDV~awD~n~~siA~v~~~k~~EnL-~nl~t~~yDiNaa~~-~ 136 (239) T TIGR00477 67 EAVKVVKP-----CKTLDLGCGQGRNSLYLSLAG---YDVDAWDHNEASIASVEEIKEKENL-DNLRTDVYDINAAAL-D 136 (239) T ss_pred HHHHCCCC-----CCEEECCCCCCHHHHHHHHHC---CCCEEECCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHC-C T ss_conf 55502379-----865326888853789997616---8410121686688759988876267-110046554335540-1 Q ss_pred CCCCCCEEEEEE--CCCHHHHHHHCCCCHHCCCCCEEEEEE-CCCCCCCH Q ss_conf 446740366420--132134432012100048521177630-55445510 Q gi|254780624|r 139 NSFDACTLAFGI--RNMPHITLVLQEIYRILKCGGRLLVLE-FSEVQGPV 185 (265) Q Consensus 139 ~sfD~V~~sf~l--~~~~d~~~~l~e~~RvLKpGG~~~i~d-f~~p~~~~ 185 (265) T Consensus 137 e~YDFI~sTVVf~FL~a~rvP~iIanMq~hT~pGGYNLIVaAMdTaDyPC 186 (239) T TIGR00477 137 EDYDFILSTVVFMFLEAERVPEIIANMQEHTKPGGYNLIVAAMDTADYPC 186 (239) T ss_pred CCCCEEEEEHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCC T ss_conf 27874210201221058877267886587467987322233215788888 |
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases . Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite.; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0046690 response to tellurium ion, 0005737 cytoplasm. |
| >KOG2904 consensus | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.7e-08 Score=73.66 Aligned_cols=105 Identities=17% Similarity=0.287 Sum_probs=77.0 Q ss_pred CCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC-----CCCCCCCCCCC Q ss_conf 9977986023355777776641388632787213322221111000001122222222222333-----45755446740 Q gi|254780624|r 70 KDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET-----LPFEANSFDAC 144 (265) Q Consensus 70 ~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~-----lp~~d~sfD~V 144 (265) T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dll 226 (328) T KOG2904 148 KHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLL 226 (328) T ss_pred CCCEEEEECCCCCHHHHHHHHCCC-CCEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCEEEE T ss_conf 666688705783188999983478-7348998532889999998899874158468984122201256554545752488 Q ss_pred EEE--EE-----------ECCCHH-------------HHHHHCCCCHHCCCCCEEEE Q ss_conf 366--42-----------013213-------------44320121000485211776 Q gi|254780624|r 145 TLA--FG-----------IRNMPH-------------ITLVLQEIYRILKCGGRLLV 175 (265) Q Consensus 145 ~~s--f~-----------l~~~~d-------------~~~~l~e~~RvLKpGG~~~i 175 (265) T Consensus 227 vsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~l 283 (328) T KOG2904 227 VSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQL 283 (328) T ss_pred ECCCCCCCCCCHHHCCCHHEECCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEE T ss_conf 538996555512232713302374454306663269999998766754566885889 |
|
| >TIGR00080 pimt protein-L-isoaspartate O-methyltransferase; InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase ( |
|---|
Probab=98.70 E-value=1.7e-08 Score=74.89 Aligned_cols=111 Identities=23% Similarity=0.275 Sum_probs=84.5 Q ss_pred HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHC-----CCCCCCCCCCCCCCC Q ss_conf 999852064467997798602335577777664138863278721332222111100000-----112222222222233 Q gi|254780624|r 58 EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFK-----ENLQDCITFIEANAE 132 (265) Q Consensus 58 ~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~-----~~~~~~i~~~~~da~ 132 (265) T Consensus 70 A~m~~yL~nhL~~~~~vLeiG~GSGY~aavlA~~v~~~G~V~SiEri~~L~~~A~~~Lk~hhseqL~~-~NV~v~~GDG~ 148 (228) T TIGR00080 70 AKMTEYLENHLKPGAKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELVEKARRRLKKHHSEQLGL-DNVIVIEGDGR 148 (228) T ss_pred HHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCC-CCEEEEECCCC T ss_conf 99999888521403556650478558999999987139718998535788999998765431444068-86589977886 Q ss_pred CCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEE Q ss_conf 3457554467403664201321344320121000485211776 Q gi|254780624|r 133 TLPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLV 175 (265) Q Consensus 133 ~lp~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i 175 (265) T Consensus 149 ~G~~~~APYd~I~~~AA~k~i---P~A---L~~QL~eGG~L~~ 185 (228) T TIGR00080 149 QGWEEKAPYDAILVTAAAKEI---PKA---LIDQLEEGGILVL 185 (228) T ss_pred CCHHHCCCCCEEEEECCCCCC---CHH---HHHHHHHCCEEEE T ss_conf 571024883527752378987---657---8999972898862 |
1.1.77" />) (PCMT) (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyzes the transfer of a methyl group from S- adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerization of normal L-aspartyl and L- asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process. |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.67 E-value=2e-08 Score=74.47 Aligned_cols=111 Identities=22% Similarity=0.354 Sum_probs=83.3 Q ss_pred CCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCC-CCCCCCCCC Q ss_conf 6446799779860233557777766413886327872133222211110000011222222222223334-575544674 Q gi|254780624|r 65 NPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETL-PFEANSFDA 143 (265) Q Consensus 65 ~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~l-p~~d~sfD~ 143 (265) T Consensus 110 ~p~pg--e~VLDlCAAPGGKtt~la~~m~~~G~lvAnd~~~~R~~~L~~n~~r~G~-~n~~vt~~d~~~~~~~~~~~FD~ 186 (471) T PRK11933 110 DDNAP--QRVLDMAAAPGSKTTQIAALMNNQGALVANEYSASRVKVLHANISRCGV-SNVALTHFDGRVFGAALPEMFDA 186 (471) T ss_pred CCCCC--CEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCC-CCEEEEECCHHHHHHHCCCCCCE T ss_conf 88999--9899957785489999999758996699983889999999999997199-84799935866740323010667 Q ss_pred CEE-----EEE-ECCCHH---------------H-HHHHCCCCHHCCCCCEEEEEECCCC Q ss_conf 036-----642-013213---------------4-4320121000485211776305544 Q gi|254780624|r 144 CTL-----AFG-IRNMPH---------------I-TLVLQEIYRILKCGGRLLVLEFSEV 181 (265) Q Consensus 144 V~~-----sf~-l~~~~d---------------~-~~~l~e~~RvLKpGG~~~i~df~~p 181 (265) T Consensus 187 ILvDaPCSG~G~~rk~p~~~~~w~~~~~~~~~~~Q~~iL~~A~~~LkpGG~LV---YSTC 243 (471) T PRK11933 187 ILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLV---YSTC 243 (471) T ss_pred EEECCCCCCCEEECCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEE---EECC T ss_conf 99878888873355597576418987999999999999999998738896899---9817 |
|
| >TIGR00537 hemK_rel_arch methylase, putative; InterPro: IPR004557 These proteins exhibit homology to the Saccharomyces cerevisiae (yeast) ORF YDR140w (FYV9) | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.2e-08 Score=71.78 Aligned_cols=110 Identities=27% Similarity=0.393 Sum_probs=77.8 Q ss_pred HHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 52064467997798602335577777664138863278721332222111100000112222222222233345755446 Q gi|254780624|r 62 TNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSF 141 (265) Q Consensus 62 ~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sf 141 (265) T Consensus 14 ~nL~~~k~d-deVlEiG~GtGlvair~~~Kg~--k~i~~tDinP~Avk~~~~NA~~N~--~~l~v~~~Dlf~-~v~geKF 87 (183) T TIGR00537 14 ANLRELKPD-DEVLEIGAGTGLVAIRLKEKGK--KKILTTDINPFAVKLLRENAKLNN--VELDVLETDLFE-GVRGEKF 87 (183) T ss_pred HHHHHHCCC-CEEEEEECCHHHHHHHHHCCCC--CEEEEEECCHHHHHHHHHCCHHCC--CCEEEEECCCCC-CCCCCCE T ss_conf 986751699-5289971680489999851588--207886368799998773100026--640476111357-8555510 Q ss_pred CCCEEE--EE-----EC-----CC---------HHHHHHHCCCCHHCCCCCEEEEEE Q ss_conf 740366--42-----01-----32---------134432012100048521177630 Q gi|254780624|r 142 DACTLA--FG-----IR-----NM---------PHITLVLQEIYRILKCGGRLLVLE 177 (265) Q Consensus 142 D~V~~s--f~-----l~-----~~---------~d~~~~l~e~~RvLKpGG~~~i~d 177 (265) T Consensus 88 dviLFNpPYlp~~~d~~~gd~Ld~A~dGGkdGr~vidrFldelp~~lk~gGrv~l~~ 144 (183) T TIGR00537 88 DVILFNPPYLPLEDDEKRGDYLDLAIDGGKDGRKVIDRFLDELPEYLKEGGRVQLIQ 144 (183) T ss_pred EEEEECCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEE T ss_conf 277307898888765234766443331787305788888765688870599899996 |
No known function has been described for this yeast ORF though the null mutant is viable and exhibits K1 killer toxin hypersensitivity. Members of this entry are weakly related to the yeast ORF YNL063w which is a putative S-adenosyl-methionine-dependent methyltransferase . Members of this entry are found in archaeal, bacterial and eukaryotic lineages.; GO: 0008168 methyltransferase activity. |
| >pfam03141 DUF248 Putative methyltransferase | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.8e-08 Score=74.78 Aligned_cols=93 Identities=18% Similarity=0.359 Sum_probs=63.5 Q ss_pred CEEEECCHHHHHHHHHHHHHCCCCCEEEEE-----CCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE Q ss_conf 779860233557777766413886327872-----133222211110000011222222222223334575544674036 Q gi|254780624|r 72 YRVLDVAGGTGDVAFRIAEASDNRSQIVVA-----DINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTL 146 (265) Q Consensus 72 ~~iLDiGcGTG~~~~~l~~~~~~~~~v~gi-----D~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~ 146 (265) T Consensus 119 Rt~LDvGCGVASfGayLl~r-----~vltMS~AP~D~HeaQVQfALER----GiPA~ig-vlg-T~rLPyPs~sFDm~HC 187 (506) T pfam03141 119 RTALDVGCGVASFGAYLLSR-----DVLTMSFAPKDVHEAQVQFALER----GVPAMLG-VLG-TRRLPYPSRSFDMAHC 187 (506) T ss_pred EEEEECCCCEECHHHHHHCC-----CCEEEEECCCCCHHHHHHHHHHC----CCHHHHH-HHH-CCCCCCCCCCCCHHHH T ss_conf 89997688721037776327-----84588734764118889999971----8525665-640-3535887533012442 Q ss_pred EEEECCC-HHHHHHHCCCCHHCCCCCEEEE Q ss_conf 6420132-1344320121000485211776 Q gi|254780624|r 147 AFGIRNM-PHITLVLQEIYRILKCGGRLLV 175 (265) Q Consensus 147 sf~l~~~-~d~~~~l~e~~RvLKpGG~~~i 175 (265) T Consensus 188 sRC~IpW~~~dG~~LlEvdRvLRPGGYfV~ 217 (506) T pfam03141 188 SRCLIPWHANDGILLLEVDRVLRPGGYFVL 217 (506) T ss_pred CCCCCCCCCCCCEEEEEEEHCCCCCCEEEE T ss_conf 245674104797788654000047866994 |
Members of this family of hypothetical plant proteins are probably methyltransferases: several of the aligned sequences either match the methyltransferase profile, or contain a SAM-binding motif. A protein from Arabidopsis thaliana contains both. Several family members are described as ankyrin like. |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=98.62 E-value=9e-08 Score=70.25 Aligned_cols=107 Identities=22% Similarity=0.293 Sum_probs=76.0 Q ss_pred CCCCEEEECCHHHHH----HHHHHHHHCC----CCCEEEEECCCCCCCCCCCCCH------------------------- Q ss_conf 799779860233557----7777664138----8632787213322221111000------------------------- Q gi|254780624|r 69 SKDYRVLDVAGGTGD----VAFRIAEASD----NRSQIVVADINNEMLSVGRDRA------------------------- 115 (265) Q Consensus 69 ~~~~~iLDiGcGTG~----~~~~l~~~~~----~~~~v~giD~s~~Ml~~a~~r~------------------------- 115 (265) T Consensus 98 ~~~lrIWsagCStGEE~YSlAm~l~e~~~~~~~~~~~I~aTDIs~~~L~~Ar~G~Y~~~~~~~~~~~~~~kyF~~~~~~~ 177 (264) T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264) T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHCCCCHHHHHCCCHHHHHHHCCCCCCEE T ss_conf 99748997778888208999999999743348985699998399999999986898989984699999998806569889 Q ss_pred -HCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC--HHHHHHHCCCCHHCCCCCEEEE Q ss_conf -00112222222222233345755446740366420132--1344320121000485211776 Q gi|254780624|r 116 -FKENLQDCITFIEANAETLPFEANSFDACTLAFGIRNM--PHITLVLQEIYRILKCGGRLLV 175 (265) Q Consensus 116 -~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~~~--~d~~~~l~e~~RvLKpGG~~~i 175 (265) T Consensus 178 ~v~~~lr~~v~F~~~NL~~~~~~~~~fDlI~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~l 240 (264) T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFL 240 (264) T ss_pred EECHHHHCCCCEECCCCCCCCCCCCCCEEEEECCCEEECCHHHHHHHHHHHHHHHCCCCEEEE T ss_conf 998899850918327899998777884199976323545999999999999998389939998 |
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.3e-08 Score=71.75 Aligned_cols=95 Identities=16% Similarity=0.256 Sum_probs=68.7 Q ss_pred CCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCC--------CCCCC Q ss_conf 7997798602335577777664138863278721332222111100000112222222222233345--------75544 Q gi|254780624|r 69 SKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLP--------FEANS 140 (265) Q Consensus 69 ~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp--------~~d~s 140 (265) T Consensus 50 ~~~~~VlDLGaAPG~WsQva~~~~~~~g~VigVDl~~-~~p-----------i~gv~~i~gDi~~~~~~~~i~~~~~~~~ 117 (209) T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MDP-----------IVGVDFLQGDFRDELVLKALLERVGDSK 117 (209) T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCC-CCC-----------CCCCEEECCCCCCHHHHHHHHHHHCCCC T ss_conf 7899899806899757899999739997399986530-453-----------7896764034458899999999858987 Q ss_pred CCCCEEEE-----EECCCHH------HHHHHCCCCHHCCCCCEEEE Q ss_conf 67403664-----2013213------44320121000485211776 Q gi|254780624|r 141 FDACTLAF-----GIRNMPH------ITLVLQEIYRILKCGGRLLV 175 (265) Q Consensus 141 fD~V~~sf-----~l~~~~d------~~~~l~e~~RvLKpGG~~~i 175 (265) T Consensus 118 ~DvVlSDmAPn~tG~~~~D~~~s~~L~~~al~~a~~~Lk~gG~fv~ 163 (209) T PRK11188 118 VDVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRQVLAPGGSFVV 163 (209) T ss_pred CCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE T ss_conf 3089666665667870335999999999999999986267988999 |
|
| >pfam01189 Nol1_Nop2_Fmu NOL1/NOP2/sun family | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.9e-08 Score=71.44 Aligned_cols=113 Identities=27% Similarity=0.356 Sum_probs=84.7 Q ss_pred HHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCC--CC Q ss_conf 9852064467997798602335577777664138863278721332222111100000112222222222233345--75 Q gi|254780624|r 60 MVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLP--FE 137 (265) Q Consensus 60 ~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp--~~ 137 (265) T Consensus 76 ~~~~L~p~~g--~~VLD~CAaPGgKt~~la~l~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~-~~~~~~~~d~~~~~~~~~ 152 (277) T pfam01189 76 DAIALNPQED--EFILDMCAAPGGKTTHIAELMKNEGTVVAVDRNKQRLKRVYANIQRLGV-FNIIVQEGDARQIDQKLL 152 (277) T ss_pred HHHHHCCCCC--CEEEEECCCCCCHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCC-CCEEEEECCCCCCCCCCC T ss_conf 9997188999--9898836788816999998758987799837978999999999997599-747999664445574346 Q ss_pred CCCCCCCEE-----EEE-ECCCHHH----------------HHHHCCCCHHCCCCCEEEE Q ss_conf 544674036-----642-0132134----------------4320121000485211776 Q gi|254780624|r 138 ANSFDACTL-----AFG-IRNMPHI----------------TLVLQEIYRILKCGGRLLV 175 (265) Q Consensus 138 d~sfD~V~~-----sf~-l~~~~d~----------------~~~l~e~~RvLKpGG~~~i 175 (265) T Consensus 153 ~~~fD~vLvDaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lvY 212 (277) T pfam01189 153 GGEFDRILLDAPCSGTGVIRRDPDIKWLRREADIAQLAELQKELLKAAWDLVKPGGVLVY 212 (277) T ss_pred CCCCCEEEECCCCCCCCEECCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE T ss_conf 666657997289889863455853121199999999999999999999997176998999 |
|
| >KOG1661 consensus | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.3e-08 Score=74.02 Aligned_cols=113 Identities=19% Similarity=0.218 Sum_probs=84.8 Q ss_pred HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCE-EEEECCCCCCCCCCCCCHHCCC---------CCCCCCCC Q ss_conf 9998520644679977986023355777776641388632-7872133222211110000011---------22222222 Q gi|254780624|r 58 EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQ-IVVADINNEMLSVGRDRAFKEN---------LQDCITFI 127 (265) Q Consensus 58 ~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~-v~giD~s~~Ml~~a~~r~~~~~---------~~~~i~~~ 127 (265) T Consensus 70 a~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~iv 149 (237) T KOG1661 70 ATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIV 149 (237) T ss_pred HHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCEEEE T ss_conf 99999999862347310133787408999999994577766514441599999999877765047304556414864799 Q ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCHHCCCCCEEEEE Q ss_conf 2223334575544674036642013213443201210004852117763 Q gi|254780624|r 128 EANAETLPFEANSFDACTLAFGIRNMPHITLVLQEIYRILKCGGRLLVL 176 (265) Q Consensus 128 ~~da~~lp~~d~sfD~V~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~ 176 (265) T Consensus 150 vGDgr~g~~e~a~YDaIhvGA------aa~~~pq~l~dqL~~gGrllip 192 (237) T KOG1661 150 VGDGRKGYAEQAPYDAIHVGA------AASELPQELLDQLKPGGRLLIP 192 (237) T ss_pred ECCCCCCCCCCCCCCEEEECC------CCCCCHHHHHHHHCCCCEEEEE T ss_conf 677623477568766578766------7622479999863438728986 |
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.7e-08 Score=72.10 Aligned_cols=104 Identities=34% Similarity=0.506 Sum_probs=74.9 Q ss_pred EEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC--CCCCC-CCCCCCEEEEEE Q ss_conf 986023355777776641388632787213322221111000001122222222222333--45755-446740366420 Q gi|254780624|r 74 VLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET--LPFEA-NSFDACTLAFGI 150 (265) Q Consensus 74 iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~--lp~~d-~sfD~V~~sf~l 150 (265) T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~ 128 (257) T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLV 128 (257) T ss_pred EEEEECCCCHHH-HHHHHHCCCCEEEEECCCHHHHHHHHHHHCC-CCCCCEEEEECCCCCCCCCCCCCCEEEEE-EECCH T ss_conf 588603854689-9999735785799936888999999986300-45663576760421355675666657789-86123 Q ss_pred CCCHHHHHHHCCCCHHCCCCCEEEEEECCC Q ss_conf 132134432012100048521177630554 Q gi|254780624|r 151 RNMPHITLVLQEIYRILKCGGRLLVLEFSE 180 (265) Q Consensus 151 ~~~~d~~~~l~e~~RvLKpGG~~~i~df~~ 180 (265) T Consensus 129 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257) T COG0500 129 LHLLPPAKALRELLRVLKPGGRLVLSDLLR 158 (257) T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEECCC T ss_conf 443028999999998707886899996244 |
|
| >pfam02384 N6_Mtase N-6 DNA Methylase | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.2e-08 Score=71.79 Aligned_cols=121 Identities=20% Similarity=0.247 Sum_probs=82.8 Q ss_pred HHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCC------CCCEEEEECCCCCCCCCCCCCHHCCCCC-CCCCC Q ss_conf 7999999852064467997798602335577777664138------8632787213322221111000001122-22222 Q gi|254780624|r 54 RFWKEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASD------NRSQIVVADINNEMLSVGRDRAFKENLQ-DCITF 126 (265) Q Consensus 54 r~Wr~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~------~~~~v~giD~s~~Ml~~a~~r~~~~~~~-~~i~~ 126 (265) T Consensus 32 r~Vv~lmv~ll~p~~~~--~V~DPacGtGgfLi~a~~~i~~~~~~~~~~~i~G~E~~~~~~~la~mNm~lhgi~~~~~~i 109 (312) T pfam02384 32 REVSKLIVELLEPKPGE--SIYDPACGSGGFLIQADKFVKSHDGDTNDISIYGQELNPTTYRLARMNMILHGIEYNDFGI 109 (312) T ss_pred HHHHHHHHHHHCCCCCC--EEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCCC T ss_conf 89999999982899999--8821687733789999999998437855655636889989999999999984798874552 Q ss_pred CCCCCCCCCC--CCCCCCCCEE--EEEECCCHH-------------------H-HHHHCCCCHHCCCCCEEEEE Q ss_conf 2222333457--5544674036--642013213-------------------4-43201210004852117763 Q gi|254780624|r 127 IEANAETLPF--EANSFDACTL--AFGIRNMPH-------------------I-TLVLQEIYRILKCGGRLLVL 176 (265) Q Consensus 127 ~~~da~~lp~--~d~sfD~V~~--sf~l~~~~d-------------------~-~~~l~e~~RvLKpGG~~~i~ 176 (265) T Consensus 110 ~~gdsl~~~~~~~~~kfD~IlsNPPFg~k~~~~~~~~~~~~~~~~~~~~~~~~e~~Fiqh~l~~Lk~~GraaiV 183 (312) T pfam02384 110 RHGDTLLSPKFEEDKKFDVVVANPPFNQKWDANDNLENDPRFRAYGVPPKSNADFAFLQHIIYHLSPNGRAAVV 183 (312) T ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEE T ss_conf 14776557676654551189837864667665432102721103687888744299999999856999769999 |
Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The R-M system is a complex containing three polypeptides: M (this family), S (pfam01420), and R. This family consists of N-6 adenine-specific DNA methylase EC:2.1.1.72 from Type I and Type IC restriction systems. These methylases have the same sequence specificity as their corresponding restriction enzymes. |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=8.8e-08 Score=70.33 Aligned_cols=121 Identities=17% Similarity=0.177 Sum_probs=85.5 Q ss_pred HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC-CCC Q ss_conf 9998520644679977986023355777776641388632787213322221111000001122222222222333-457 Q gi|254780624|r 58 EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET-LPF 136 (265) Q Consensus 58 ~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~-lp~ 136 (265) T Consensus 55 r~Mm~~LLf~p-~Pk~vl~iGLGgGsl~k~~~~~~-P~~~i~~VEIdp~Vi~vAr~~F~lP~dd~Rl~V~~~Dg~~fv~~ 132 (262) T PRK04457 55 RAMMGFLLFNP-RPQHILQIGLGGGSFAKFIDTYL-PDTRQTAVEINPQVIAVARNHFELPFEDEKFEIIEADGAEYIKV 132 (262) T ss_pred HHHHHHHHCCC-CCCEEEEEECCHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHH T ss_conf 99999986589-97869999257019999999839-86758999878899999998657999997269995538999854 Q ss_pred CCCCCCCCEE-EEEECCCH---HHHHHHCCCCHHCCCCCEEEEEECCC Q ss_conf 5544674036-64201321---34432012100048521177630554 Q gi|254780624|r 137 EANSFDACTL-AFGIRNMP---HITLVLQEIYRILKCGGRLLVLEFSE 180 (265) Q Consensus 137 ~d~sfD~V~~-sf~l~~~~---d~~~~l~e~~RvLKpGG~~~i~df~~ 180 (265) T Consensus 133 ~~~~~DvI~vD~fd~~g~~~~L~t~~Fy~~c~~~L~~~Gvlv~Nl~~~ 180 (262) T PRK04457 133 FPASTDVILVDGFDGEQIVDALVTQPFFRDCRNALSSDGVFVTNLWSG 180 (262) T ss_pred CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCC T ss_conf 867778899968898888600082999999998649893999986889 |
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase B; InterPro: IPR004573 This family consists of bacterial sequences related to Escherichia coli rsmB, an rRNA SAM-dependent methyltransferase | Back alignment and domain information |
|---|
Probab=98.53 E-value=8.5e-08 Score=70.42 Aligned_cols=118 Identities=25% Similarity=0.369 Sum_probs=91.4 Q ss_pred HHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCC-CCCCCCCCCCCCCCC- Q ss_conf 998520644679977986023355777776641388632787213322221111000001122-222222222333457- Q gi|254780624|r 59 AMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQ-DCITFIEANAETLPF- 136 (265) Q Consensus 59 ~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~-~~i~~~~~da~~lp~- 136 (265) T Consensus 262 ~va~~L~P~~~E--~iLD~CAAPGGKttHI~EL~~~~g~v~a~D~~~~rl~~~~~~~~RLGl~~i~~~~~~~~~~~~~~W 339 (487) T TIGR00563 262 WVATLLDPKNEE--TILDACAAPGGKTTHIAELMPDQGQVVALDLHKHRLKRVKENLDRLGLTIIKVEEVDGDKAGPKEW 339 (487) T ss_pred HHHHHHCCCCCC--EEEEEECCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCC T ss_conf 999973889887--477311484570476774247972089886212578899999986188378877202567766544 Q ss_pred --CCC----CCCCCE-----EEEE-ECCCHHH----------------HHHHCCCCHHCCCCCEEEEEECCCC Q ss_conf --554----467403-----6642-0132134----------------4320121000485211776305544 Q gi|254780624|r 137 --EAN----SFDACT-----LAFG-IRNMPHI----------------TLVLQEIYRILKCGGRLLVLEFSEV 181 (265) Q Consensus 137 --~d~----sfD~V~-----~sf~-l~~~~d~----------------~~~l~e~~RvLKpGG~~~i~df~~p 181 (265) T Consensus 340 ~~e~~ksaa~fDRiLlDaPCSg~GvirR~PD~kw~~~~~diA~L~~LQ~~iL~aiaP~vK~GGtLv---YsTC 409 (487) T TIGR00563 340 LAEVEKSAAQFDRILLDAPCSGTGVIRRHPDIKWLRKPADIARLAELQKEILKAIAPLVKKGGTLV---YSTC 409 (487) T ss_pred CCCCHHHHHHHCEEEECCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEE---EEEC T ss_conf 452010233314215607877443300178755566856517899999999998856535797588---8614 |
All, are likely to be functionally equivalent and based on comparison of core motifs would appear to belong to a larger superfamily of S-adenosyl-methionine (AdoMet)-dependent RNA m5C methyltransferases . In E. coli, originally, the reading frame, encoding this protein, was interpreted as two reading frames, fmu and fmv. It has since been renamed, rsmB (Alternate Gene Symbols: rrmB, sun, fmu, fmv, yhdB). The recombinant protein, commonly referred to as Fmu, has been demonstrated to methylate only C967 of the 16S ribosomal RNA and to produce only m5C at that position. . The structure of the E. coli protein (Fmu) has been determined . Fmu contains three subdomains which share structural homology to DNA m5C methyltransferases and two RNA binding protein families. The N-terminal sequence of Fmu shares homology to another (noncatalytic) RNA binding protein, e.g. the ribosomal RNA antiterminator protein NusB (IPR011605 from INTERPRO). The catalytic lobe of Fmu, N1 domain, comprises the conserved core identified in all of the putative RNA m5C MTase sequences. Although the N1 domain is structurally homologous to known RNA binding proteins, there is no clear sequence motif that defines its role in RNA binding and recognition. At the functional centre of the catalytic lobe is the MTase domain of Fmu (residues 232-429), which adopts a fold typical of known AdoMet-dependent methyltransferases. In spite of the lack of a conserved RNA binding motif in the N1 domain, the close association of the N1 and MTase domains suggest that any RNA bound in the active site of the MTase domain is likely to interact with the N1 domain. ; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing. |
| >pfam01739 CheR CheR methyltransferase, SAM binding domain | Back alignment and domain information |
|---|
Probab=98.52 E-value=1e-07 Score=69.88 Aligned_cols=109 Identities=22% Similarity=0.265 Sum_probs=75.2 Q ss_pred CCCCCCEEEECCHHHHH----HHHHHHHHCC----CCCEEEEECCCCCCCCCCCCCH----------------------- Q ss_conf 46799779860233557----7777664138----8632787213322221111000----------------------- Q gi|254780624|r 67 RKSKDYRVLDVAGGTGD----VAFRIAEASD----NRSQIVVADINNEMLSVGRDRA----------------------- 115 (265) Q Consensus 67 ~~~~~~~iLDiGcGTG~----~~~~l~~~~~----~~~~v~giD~s~~Ml~~a~~r~----------------------- 115 (265) T Consensus 27 ~~~~~lrIWsagCStGEE~YSlAi~l~e~~~~~~~~~~~I~atDI~~~~l~~Ar~G~Y~~~~~~~~p~~~~~ryF~~~~~ 106 (194) T pfam01739 27 RNSRRVRIWSAGCSSGEEPYSLAMLLAETLPNALPWDFKILATDIDLSALEKARAGVYPERELEGLPPELLRRYFTKGAG 106 (194) T ss_pred CCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCCHHHHHCCCHHHHHHHCCCCCC T ss_conf 88995599973688995189999999997432578744999973988999999878988999845999999962860789 Q ss_pred ----HCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCH--HHHHHHCCCCHHCCCCCEEEEE Q ss_conf ----001122222222222333457554467403664201321--3443201210004852117763 Q gi|254780624|r 116 ----FKENLQDCITFIEANAETLPFEANSFDACTLAFGIRNMP--HITLVLQEIYRILKCGGRLLVL 176 (265) Q Consensus 116 ----~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~~~~--d~~~~l~e~~RvLKpGG~~~i~ 176 (265) T Consensus 107 ~~~~i~~~lr~~V~F~~~NL~~~~~~-~~~DlIfCRNVlIYF~~~~~~~vl~~l~~~L~~gG~L~lG 172 (194) T pfam01739 107 GGYRVKPEIKEMVLFEYHNLLDYPPL-GDFDVIFCRNVLIYFDEETQRKILNRFASALKPGGYLFLG 172 (194) T ss_pred CCEEECHHHHCCCEEEECCCCCCCCC-CCEEEEEECCEEEECCHHHHHHHHHHHHHHHCCCCEEEEE T ss_conf 94876889971166854665568876-7503999802101379999999999999984899499980 |
CheR proteins are part of the chemotaxis signaling mechanism in bacteria. CheR methylates the chemotaxis receptor at specific glutamate residues. CheR is an S-adenosylmethionine- dependent methyltransferase - the C-terminal domain (this one) binds SAM. |
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA; InterPro: IPR001566 This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family | Back alignment and domain information |
|---|
Probab=98.49 E-value=9e-08 Score=70.26 Aligned_cols=104 Identities=22% Similarity=0.310 Sum_probs=82.5 Q ss_pred HHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC--- Q ss_conf 99998520644679977986023355777776641388632787213322221111000001122222222222333--- Q gi|254780624|r 57 KEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET--- 133 (265) Q Consensus 57 r~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~--- 133 (265) T Consensus 283 ~~~a~~~l~Lqg~e--~V~DayCG~GtftLpLA~qak---~v~G~E~v~e~v~~a~~NAe~Ng~-~N~~F~~g~~E~~~p 356 (434) T TIGR00479 283 VDRALEALELQGEE--KVVDAYCGVGTFTLPLAKQAK---SVVGVEVVPESVEDAKRNAELNGI-ANVEFLAGTLETVLP 356 (434) T ss_pred HHHHHHHHHCCCCC--EEEEEECCCCCCHHHHHHCCC---EEEEEECCHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHCC T ss_conf 99999997159865--578631575520044440121---888871437678999888886035-320133312321101 Q ss_pred -CCCCCCCCCCCEEEEEECCCHHHH------HHHCCCCHHCCCCCEEEE Q ss_conf -457554467403664201321344------320121000485211776 Q gi|254780624|r 134 -LPFEANSFDACTLAFGIRNMPHIT------LVLQEIYRILKCGGRLLV 175 (265) Q Consensus 134 -lp~~d~sfD~V~~sf~l~~~~d~~------~~l~e~~RvLKpGG~~~i 175 (265) T Consensus 357 ~~~~e~~~~D~~ll--------DPPR~GCa~~~L~~I~~-~kP~rivYV 396 (434) T TIGR00479 357 KQPWEGISPDVVLL--------DPPRKGCAAEVLRTIIK-LKPKRIVYV 396 (434) T ss_pred CCCCCCCCCCEEEE--------CCCCCCCHHHHHHHHHH-CCCEEEEEE T ss_conf 44222677898888--------88898745899998862-077059998 |
The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA .; GO: 0003723 RNA binding, 0008173 RNA methyltransferase activity, 0006396 RNA processing. |
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.3e-07 Score=66.61 Aligned_cols=120 Identities=22% Similarity=0.274 Sum_probs=79.3 Q ss_pred HHHHHHHHCC-CCCCCCEEEECCHHHH----HHHHHHHHHCCC----CCEEEEECCCCCCCCCCCCCHHC-----C---- Q ss_conf 9999852064-4679977986023355----777776641388----63278721332222111100000-----1---- Q gi|254780624|r 57 KEAMVTNLNP-RKSKDYRVLDVAGGTG----DVAFRIAEASDN----RSQIVVADINNEMLSVGRDRAFK-----E---- 118 (265) Q Consensus 57 r~~~i~~l~~-~~~~~~~iLDiGcGTG----~~~~~l~~~~~~----~~~v~giD~s~~Ml~~a~~r~~~-----~---- 118 (265) T Consensus 82 ~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~ 161 (268) T COG1352 82 RDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPP 161 (268) T ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHCCCCCHHHHHCCCCH T ss_conf 99987998730469853999667689955899999999873322587438999979999999986288876676544998 Q ss_pred -------------------CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC--HHHHHHHCCCCHHCCCCCEEEEE Q ss_conf -------------------12222222222233345755446740366420132--13443201210004852117763 Q gi|254780624|r 119 -------------------NLQDCITFIEANAETLPFEANSFDACTLAFGIRNM--PHITLVLQEIYRILKCGGRLLVL 176 (265) Q Consensus 119 -------------------~~~~~i~~~~~da~~lp~~d~sfD~V~~sf~l~~~--~d~~~~l~e~~RvLKpGG~~~i~ 176 (265) T Consensus 162 ~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268) T COG1352 162 ELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268) T ss_pred HHHHHHEEECCCCCEEECHHHHCCCEEEECCCCCCCCCCCCCCEEEECCEEEEECHHHHHHHHHHHHHHHCCCCEEEEC T ss_conf 9996337646998479876876243775357888754358988899841488637899999999999974899789982 |
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.1e-07 Score=67.93 Aligned_cols=115 Identities=25% Similarity=0.399 Sum_probs=83.9 Q ss_pred HHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCE-EEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCC---C Q ss_conf 8520644679977986023355777776641388632-78721332222111100000112222222222233345---7 Q gi|254780624|r 61 VTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQ-IVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLP---F 136 (265) Q Consensus 61 i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~-v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp---~ 136 (265) T Consensus 149 a~~L~p~pg--e~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~-nv~~~~~d~~~~~~~~~ 225 (355) T COG0144 149 ALVLDPKPG--ERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR-NVIVVNKDARRLAELLP 225 (355) T ss_pred HHHCCCCCC--CEEEECCCCCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHCCC-CEEEEECCCCCCCCCCC T ss_conf 997199997--968880799976999999966899876997449878999999999971998-34899513301431134 Q ss_pred CCCCCCCCE-----EEEE-ECCCHH----------------HHHHHCCCCHHCCCCCEEEEEECCCC Q ss_conf 554467403-----6642-013213----------------44320121000485211776305544 Q gi|254780624|r 137 EANSFDACT-----LAFG-IRNMPH----------------ITLVLQEIYRILKCGGRLLVLEFSEV 181 (265) Q Consensus 137 ~d~sfD~V~-----~sf~-l~~~~d----------------~~~~l~e~~RvLKpGG~~~i~df~~p 181 (265) T Consensus 226 ~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LV---YSTC 289 (355) T COG0144 226 GGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLV---YSTC 289 (355) T ss_pred CCCCCCEEEECCCCCCCEEECCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEE---EEEC T ss_conf 557778599879998771133581232038999999999999999999998448798899---9902 |
|
| >TIGR00438 rrmJ ribosomal RNA large subunit methyltransferase J; InterPro: IPR004512 The ribosomal RNA large subunit methyltransferase J 2 | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.5e-07 Score=68.79 Aligned_cols=97 Identities=20% Similarity=0.295 Sum_probs=72.6 Q ss_pred CCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCC--------CCCCC- Q ss_conf 799779860233557777766413886327872133222211110000011222222222223334--------57554- Q gi|254780624|r 69 SKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETL--------PFEAN- 139 (265) Q Consensus 69 ~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~l--------p~~d~- 139 (265) T Consensus 31 k~G~~VlDLGAAPGGWsQva~~~~G~kG~ViA~Dl~~-~--------k~FP-~~nv~fi~GDftdee~l~ki~~~~g~de 100 (192) T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQP-M--------KGFP-IENVDFIRGDFTDEEVLNKILERVGDDE 100 (192) T ss_pred ECCCEEEECCCCCCCHHHHHHHHHCCCCEEEEEECCC-C--------CCCC-CCCEEEEECCCCCHHHHHHHHHHCCCCC T ss_conf 0788678657898738778877606853389985455-7--------8856-4661475447678789999998578987 Q ss_pred -CCCCCEEEE-----EECCCHH------HHHHHCCCCHHCCCCCEEEE Q ss_conf -467403664-----2013213------44320121000485211776 Q gi|254780624|r 140 -SFDACTLAF-----GIRNMPH------ITLVLQEIYRILKCGGRLLV 175 (265) Q Consensus 140 -sfD~V~~sf-----~l~~~~d------~~~~l~e~~RvLKpGG~~~i 175 (265) T Consensus 101 kk~DVV~SDaaP~~SG~~~iDh~Rs~dLv~~aL~ia~~vL~~~Gnfvv 148 (192) T TIGR00438 101 KKVDVVMSDAAPNISGIWDIDHLRSIDLVELALDIAKEVLKPKGNFVV 148 (192) T ss_pred CEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEE T ss_conf 437789852688878987543443799999999999998615898999 |
1.1 from EC methylates the 23S rRNA. It specifically methylates the uridine in position 2552 of 23s rRNA in the 50S particle using S-adenosyl-L-methionine as a substrate. It was previously known as cell division protein ftsJ.; GO: 0016436 rRNA (uridine) methyltransferase activity, 0006364 rRNA processing. |
| >KOG1663 consensus | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.6e-07 Score=68.63 Aligned_cols=101 Identities=25% Similarity=0.354 Sum_probs=82.8 Q ss_pred CEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC-C-----CCCCCCCCCCE Q ss_conf 77986023355777776641388632787213322221111000001122222222222333-4-----57554467403 Q gi|254780624|r 72 YRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAET-L-----PFEANSFDACT 145 (265) Q Consensus 72 ~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~-l-----p~~d~sfD~V~ 145 (265) T Consensus 75 k~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfaF 154 (237) T KOG1663 75 KRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFAF 154 (237) T ss_pred CEEEEEECCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCCCCEEEEE T ss_conf 33899812127899999974599965999961868888759999860633034234252566699998557998425999 Q ss_pred EEEEECCCHHHHHHHCCCCHHCCCCCEEEE Q ss_conf 664201321344320121000485211776 Q gi|254780624|r 146 LAFGIRNMPHITLVLQEIYRILKCGGRLLV 175 (265) Q Consensus 146 ~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i 175 (265) T Consensus 155 vD---adK~nY~~y~e~~l~Llr~GGvi~~ 181 (237) T KOG1663 155 VD---ADKDNYSNYYERLLRLLRVGGVIVV 181 (237) T ss_pred EC---CCHHHHHHHHHHHHHHCCCCCEEEE T ss_conf 73---6667789999999856213538999 |
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.1e-07 Score=69.59 Aligned_cols=104 Identities=24% Similarity=0.287 Sum_probs=78.9 Q ss_pred CCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCC-CCCCCCCCCCCC-CCC---CCCCCCCCE Q ss_conf 977986023355777776641388632787213322221111000001122-222222222333-457---554467403 Q gi|254780624|r 71 DYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQ-DCITFIEANAET-LPF---EANSFDACT 145 (265) Q Consensus 71 ~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~-~~i~~~~~da~~-lp~---~d~sfD~V~ 145 (265) T Consensus 218 GkrvLNlFsYTGgfsv~Aa~gGA--~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393) T COG1092 218 GKRVLNLFSYTGGFSVHAALGGA--SEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393) T ss_pred CCEEEEECCCCCHHHHHHHHCCC--CCEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHCCCCCCEEE T ss_conf 87678864667699999986699--7148982657899999999986299710105672239999999985599556899 Q ss_pred E---EEEE------CCCHHHHHHHCCCCHHCCCCCEEEEE Q ss_conf 6---6420------13213443201210004852117763 Q gi|254780624|r 146 L---AFGI------RNMPHITLVLQEIYRILKCGGRLLVL 176 (265) Q Consensus 146 ~---sf~l------~~~~d~~~~l~e~~RvLKpGG~~~i~ 176 (265) T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~lL~pgG~l~~~ 335 (393) T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTS 335 (393) T ss_pred ECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEE T ss_conf 7881003582100538989999999999970799689999 |
|
| >pfam10294 Methyltransf_16 Putative methyltransferase | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.3e-07 Score=66.62 Aligned_cols=105 Identities=19% Similarity=0.230 Sum_probs=69.9 Q ss_pred CCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCC-CCCCCCCCCCCCC-CCC---CCCCCCCCCC Q ss_conf 9977986023355777776641388632787213322221111000001-1222222222223-334---5755446740 Q gi|254780624|r 70 KDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKE-NLQDCITFIEANA-ETL---PFEANSFDAC 144 (265) Q Consensus 70 ~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~-~~~~~i~~~~~da-~~l---p~~d~sfD~V 144 (265) T Consensus 44 ~~k~VLELGaG~GL~Gi~~a~~~~-~~~V~lTD~-~~~l~~l~~Nv~~N~~~~~~v~~~~LdWg~~~~~~~~~~~~fD~I 121 (171) T pfam10294 44 SGKNVLELGSGCGLVGIAVALLLP-GASVTITDL-EEAIELMKKNIELNKALSSKVTAKVLDWGEELPDDVFDPHPVDLI 121 (171) T ss_pred CCCEEEEECCCCCHHHHHHHHHCC-CCEEEECCC-HHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHCCCCCCCEE T ss_conf 687678705665758999998579-858996383-789999999999705789966999811089884333146776789 Q ss_pred EEEEEECCCHHHHHHHCCCCHHCCCCCEEEEE Q ss_conf 36642013213443201210004852117763 Q gi|254780624|r 145 TLAFGIRNMPHITLVLQEIYRILKCGGRLLVL 176 (265) Q Consensus 145 ~~sf~l~~~~d~~~~l~e~~RvLKpGG~~~i~ 176 (265) T Consensus 122 l~sD~iY~~~~~~~L~~ti~~ll~~~g~~lla 153 (171) T pfam10294 122 LAADCVYNEDAFPLLVKTLKDLLGKETVILVA 153 (171) T ss_pred EEECEEECHHHHHHHHHHHHHHHCCCCEEEEE T ss_conf 97121335777999999999995899899999 |
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=4e-07 Score=66.05 Aligned_cols=107 Identities=24% Similarity=0.375 Sum_probs=72.1 Q ss_pred CCCCEEEECCHHHHH----HHHHHHHHC---CCCCEEEEECCCCCCCCCCCCCH------H--------C---------- Q ss_conf 799779860233557----777766413---88632787213322221111000------0--------0---------- Q gi|254780624|r 69 SKDYRVLDVAGGTGD----VAFRIAEAS---DNRSQIVVADINNEMLSVGRDRA------F--------K---------- 117 (265) Q Consensus 69 ~~~~~iLDiGcGTG~----~~~~l~~~~---~~~~~v~giD~s~~Ml~~a~~r~------~--------~---------- 117 (265) T Consensus 114 ~~~lRIWSAgCSTGEEpYSiAm~l~E~~~~~~~~~~I~aTDIs~~~L~~Ar~GiY~~~~~~~~p~~~~~ryF~~~~~~~~ 193 (287) T PRK10611 114 SGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRLEELKTLSPQQLQRYFMRGTGPHE 193 (287) T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHCCCCCHHHHHCCCHHHHHHHEECCCCCCC T ss_conf 89758997677887239999999999732377770799997988899999808988899845999999511641578766 Q ss_pred ------CCCCCCCCCCCCCCCCCCCC-CCCCCCCEEEEEECCC--HHHHHHHCCCCHHCCCCCEEEE Q ss_conf ------11222222222223334575-5446740366420132--1344320121000485211776 Q gi|254780624|r 118 ------ENLQDCITFIEANAETLPFE-ANSFDACTLAFGIRNM--PHITLVLQEIYRILKCGGRLLV 175 (265) Q Consensus 118 ------~~~~~~i~~~~~da~~lp~~-d~sfD~V~~sf~l~~~--~d~~~~l~e~~RvLKpGG~~~i 175 (265) T Consensus 194 g~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fDlIfCRNVlIYFd~~~q~~vl~~~~~~L~pgG~L~l 260 (287) T PRK10611 194 GLVRVRQELANYVDFQSLNLLAKQYTVPGPFDAIFCRNVMIYFDKTTQQEILRRFVPLLKPDGLLFA 260 (287) T ss_pred CEEEECHHHHCCCEEEHHHCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEE T ss_conf 6187457876307771400679988888995199978405367899999999999998689928998 |
|
| >KOG1500 consensus | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.6e-06 Score=62.17 Aligned_cols=99 Identities=25% Similarity=0.357 Sum_probs=74.6 Q ss_pred CCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE---E Q ss_conf 9779860233557777766413886327872133222211110000011222222222223334575544674036---6 Q gi|254780624|r 71 DYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPFEANSFDACTL---A 147 (265) Q Consensus 71 ~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~~d~sfD~V~~---s 147 (265) T Consensus 178 ~kiVlDVGaGSGILS~FAaqAGA--~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG 253 (517) T KOG1500 178 DKIVLDVGAGSGILSFFAAQAGA--KKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMG 253 (517) T ss_pred CCEEEEECCCCCHHHHHHHHHCC--CEEEEEEHHH-HHHHHHHHHHCCCCCCEEEECCCCCCEECCC-CCCCEEEECCCH T ss_conf 74899815882489999987386--5389874567-9999999874366320378705632010375-103478725621 Q ss_pred EEECCCHHHHHHHCCCCHHCCCCCEEE Q ss_conf 420132134432012100048521177 Q gi|254780624|r 148 FGIRNMPHITLVLQEIYRILKCGGRLL 174 (265) Q Consensus 148 f~l~~~~d~~~~l~e~~RvLKpGG~~~ 174 (265) T Consensus 254 ~mL~NERMLEsYl-~Ark~l~P~GkMf 279 (517) T KOG1500 254 YMLVNERMLESYL-HARKWLKPNGKMF 279 (517) T ss_pred HHHHHHHHHHHHH-HHHHHCCCCCCCC T ss_conf 4111088899999-9987428777446 |
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.36 E-value=6.7e-07 Score=64.63 Aligned_cols=114 Identities=18% Similarity=0.311 Sum_probs=89.7 Q ss_pred HHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCC-- Q ss_conf 999852064467997798602335577777664138863278721332222111100000112222222222233345-- Q gi|254780624|r 58 EAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLP-- 135 (265) Q Consensus 58 ~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp-- 135 (265) T Consensus 38 ~~M~s~I~pesg--lpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~------~p~~~ii~gda~~l~~~ 109 (194) T COG3963 38 RKMASVIDPESG--LPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQL------YPGVNIINGDAFDLRTT 109 (194) T ss_pred HHHHHCCCCCCC--CEEEEECCCCCHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHH------CCCCCCCCCCHHHHHHH T ss_conf 999843484459--7647776986676899996579954368998277999999975------88751305405657877 Q ss_pred ---CCCCCCCCCEEEEEECCCHH--HHHHHCCCCHHCCCCCEEEEEECC Q ss_conf ---75544674036642013213--443201210004852117763055 Q gi|254780624|r 136 ---FEANSFDACTLAFGIRNMPH--ITLVLQEIYRILKCGGRLLVLEFS 179 (265) Q Consensus 136 ---~~d~sfD~V~~sf~l~~~~d--~~~~l~e~~RvLKpGG~~~i~df~ 179 (265) T Consensus 110 l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194) T COG3963 110 LGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194) T ss_pred HHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEC T ss_conf 8652797401688656002486778999999999856899727999846 |
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.35 E-value=6.6e-07 Score=64.66 Aligned_cols=103 Identities=17% Similarity=0.207 Sum_probs=78.7 Q ss_pred CCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCC--C-CCCCCCCCCCCCC-CCCCCCCCCC Q ss_conf 6799779860233557777766413886327872133222211110000011--2-2222222222333-4575544674 Q gi|254780624|r 68 KSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKEN--L-QDCITFIEANAET-LPFEANSFDA 143 (265) Q Consensus 68 ~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~--~-~~~i~~~~~da~~-lp~~d~sfD~ 143 (265) T Consensus 74 h~~pk~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDv 152 (282) T COG0421 74 HPNPKRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDV 152 (282) T ss_pred CCCCCEEEEECCCCCHHHHHHHHCC-CCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHHHCCCCCCE T ss_conf 7997769998897669999998368-843379997088999999986667543357973689961079998748876778 Q ss_pred CEEEEEECCCHHH---------HHHHCCCCHHCCCCCEEEEE Q ss_conf 0366420132134---------43201210004852117763 Q gi|254780624|r 144 CTLAFGIRNMPHI---------TLVLQEIYRILKCGGRLLVL 176 (265) Q Consensus 144 V~~sf~l~~~~d~---------~~~l~e~~RvLKpGG~~~i~ 176 (265) T Consensus 153 Ii~D-----~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282) T COG0421 153 IIVD-----STDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282) T ss_pred EEEC-----CCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEE T ss_conf 9985-----889988430237799999999862889689994 |
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=5.4e-07 Score=65.26 Aligned_cols=114 Identities=18% Similarity=0.238 Sum_probs=92.2 Q ss_pred HHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCC Q ss_conf 99998520644679977986023355777776641388632787213322221111000001122222222222333457 Q gi|254780624|r 57 KEAMVTNLNPRKSKDYRVLDVAGGTGDVAFRIAEASDNRSQIVVADINNEMLSVGRDRAFKENLQDCITFIEANAETLPF 136 (265) Q Consensus 57 r~~~i~~l~~~~~~~~~iLDiGcGTG~~~~~l~~~~~~~~~v~giD~s~~Ml~~a~~r~~~~~~~~~i~~~~~da~~lp~ 136 (265) T Consensus 179 R~Rva~~v~----~GE~V~DmFAGVGpfsi~~Ak~g~~--~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~ 252 (341) T COG2520 179 RARVAELVK----EGETVLDMFAGVGPFSIPIAKKGRP--KVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDA |