254780628

 Score =  663 bits (1711), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 302/394 (76%), Positives = 351/394 (89%)

Query: 1   MKYLSAYENNMTGQGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQ 60
           MKY  +Y +++    SN+LG+YVHWPFC KKCPYCDFNSHVRR  + Q +FI+S L EM+
Sbjct: 1   MKYSQSYGDDVVHPDSNTLGIYVHWPFCTKKCPYCDFNSHVRRRAIDQGHFIRSLLVEME 60

Query: 61  WMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVN 120
           WMRQL+GPR ISS+FFGGGTPSLI+PQNI+++LD IAKNWT+ SNVEITIEANPSS E  
Sbjct: 61  WMRQLSGPRLISSVFFGGGTPSLIDPQNISILLDNIAKNWTLPSNVEITIEANPSSTEAG 120

Query: 121 NFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALP 180
           +F GYRKAGVNR+SLGVQSLEE++LRFLGRNHN SEA+ AIHLAR+IFPRMSFDLIYALP
Sbjct: 121 HFLGYRKAGVNRVSLGVQSLEERALRFLGRNHNVSEAVTAIHLARDIFPRMSFDLIYALP 180

Query: 181 KQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQ 240
            Q++ QWEMELQ+ALSYAVDHLSLYQLTIEKGTLFYK+HKDGDLVLP E+++ DLYNLTQ
Sbjct: 181 GQSIKQWEMELQKALSYAVDHLSLYQLTIEKGTLFYKLHKDGDLVLPDESLSADLYNLTQ 240

Query: 241 SITSAHGLHAYEISNHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKH 300
            IT  +GL++YEISNH+ LG+ESLHNL YWRYGDY+GIGPGAHSRVKV S R+A+SIEKH
Sbjct: 241 IITREYGLYSYEISNHARLGSESLHNLTYWRYGDYVGIGPGAHSRVKVDSQRIAMSIEKH 300

Query: 301 PESWLKMVRKNGHAVVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLDIECER 360
           PE+W+KMV KNGHA+VEKEFLSSEQQADEFLMMG+RLREGI VKDWE LAGR+LDIECER
Sbjct: 301 PENWVKMVEKNGHAIVEKEFLSSEQQADEFLMMGMRLREGIEVKDWERLAGRSLDIECER 360

Query: 361 NLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLA 394
            LQ QGFIER+  SRLRCTQ GM MLD+++A+L+
Sbjct: 361 RLQEQGFIERINSSRLRCTQLGMVMLDAIVADLS 394

Species: Candidatus Liberibacter solanacearum
Genus: Candidatus Liberibacter
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  503 bits (1294), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 225/385 (58%), Positives = 292/385 (75%)

Query: 11  MTGQGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRS 70
           +   G    GVYVHWPFC  KCPYCDFNSHVR   V QE F  +FL EM  +R L+GP++
Sbjct: 17  LPDTGEPGFGVYVHWPFCAAKCPYCDFNSHVRHQPVDQERFASAFLKEMAAVRALSGPKT 76

Query: 71  ISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGV 130
           ++SIF GGGTPSL++P+ ++ ILDGIA++W V + +EIT+EANPSSVE   F+GYR AGV
Sbjct: 77  VTSIFLGGGTPSLMKPETVSAILDGIARHWHVPAGIEITMEANPSSVEAERFRGYRAAGV 136

Query: 131 NRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEME 190
           NR+SLGVQ+L+++ L+FLGR H+ ++A+ AI LAR+IFPRMSFDLIYA P QT+ QWE E
Sbjct: 137 NRVSLGVQALDDRDLKFLGRLHDVADALKAIRLARDIFPRMSFDLIYARPDQTVEQWERE 196

Query: 191 LQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHA 250
           L++A+SYAVDHLSLYQLTIE+GT FY +HK G L++P    +  LY  TQ IT+  G+ A
Sbjct: 197 LKQAISYAVDHLSLYQLTIEEGTPFYGLHKAGKLIVPDGEQSAVLYEATQEITAREGMPA 256

Query: 251 YEISNHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRK 310
           YE+SNH+  GAES HNL YWRYGDY GIGPGAH R+  G  ++A + E+ PESWL MV +
Sbjct: 257 YEVSNHARPGAESRHNLTYWRYGDYAGIGPGAHGRLTRGPEKIATATERKPESWLDMVER 316

Query: 311 NGHAVVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLDIECERNLQRQGFIER 370
           +GH ++++E L  E+Q+DE L+MGLRLREG+ +  W+ L+GR+LD + E  L    FIER
Sbjct: 317 DGHGILDEERLGYEEQSDELLLMGLRLREGVDLARWQQLSGRDLDPKREEFLLEHKFIER 376

Query: 371 VQFSRLRCTQRGMTMLDSVIANLAV 395
           +  SRLRCT  GM +LDSV+A+LA 
Sbjct: 377 IGNSRLRCTPSGMLILDSVVADLAC 401

Species: Rhizobium leguminosarum
Genus: Rhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 223/385 (57%), Positives = 291/385 (75%)

Query: 11  MTGQGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRS 70
           +   G    GVYVHWPFC  KCPYCDFNSHVR   V QE F  +FLTEM  +R ++GP++
Sbjct: 16  LPDTGEPGFGVYVHWPFCAAKCPYCDFNSHVRHQPVDQERFTSAFLTEMAAVRSMSGPKT 75

Query: 71  ISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGV 130
           ++SIF GGGTPSL++P+ ++ ILDGIA++W V   +EIT+EANPSSVE   F+GYR AGV
Sbjct: 76  VTSIFLGGGTPSLMKPETVSAILDGIARHWHVPDGIEITMEANPSSVEAERFRGYRAAGV 135

Query: 131 NRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEME 190
           NR+SLGVQ+L ++ L+FLGR H+ ++A+ AI LAR+IFPRMSFDLIYA P+QT+ +WE E
Sbjct: 136 NRVSLGVQALNDRDLKFLGRLHDVADALKAIRLARDIFPRMSFDLIYARPEQTVEEWEKE 195

Query: 191 LQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHA 250
           L+ A+SYAVDHLSLYQLTIE+GT FY +HK G L++P    +  LY  TQ IT+  G+ A
Sbjct: 196 LKEAISYAVDHLSLYQLTIEEGTPFYGLHKAGKLIVPDGEQSALLYEATQEITAREGMPA 255

Query: 251 YEISNHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRK 310
           YE+SNH+  GAES HNL YWRYGDY GIGPGAH R+  G  ++A + E+ PE+WL MV +
Sbjct: 256 YEVSNHARPGAESRHNLTYWRYGDYAGIGPGAHGRLTRGPEKLATATERKPETWLDMVER 315

Query: 311 NGHAVVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLDIECERNLQRQGFIER 370
           +GH ++++E L  E+Q+DE L+MGLRLREG+ +  W+ L+GR+LD + E  L    FIER
Sbjct: 316 DGHGILDEERLGFEEQSDELLLMGLRLREGVDLARWQQLSGRDLDPKREEFLLEHKFIER 375

Query: 371 VQFSRLRCTQRGMTMLDSVIANLAV 395
           +  SRLRCT  GM +LDSV+A+LA 
Sbjct: 376 IGNSRLRCTPSGMLILDSVVADLAC 400

Species: Rhizobium leguminosarum
Genus: Rhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  498 bits (1283), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 223/385 (57%), Positives = 290/385 (75%)

Query: 11  MTGQGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRS 70
           +   G    GVYVHWPFC  KCPYCDFNSHVR   V QE F  +FLTEM  +R ++GP++
Sbjct: 16  LPDTGEPGFGVYVHWPFCAAKCPYCDFNSHVRHQPVDQERFTSAFLTEMAAVRAMSGPKT 75

Query: 71  ISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGV 130
           ++SIF GGGTPSL++P+ ++ ILDGIA++W V   +EIT+EANPSSVE   F+GYR AGV
Sbjct: 76  VTSIFLGGGTPSLMKPEAVSAILDGIARHWHVPDGIEITMEANPSSVEAERFRGYRAAGV 135

Query: 131 NRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEME 190
           NR+SLGVQ+L ++ L+FLGR H+ ++A+ AI LAR+IFPRMSFDLIYA P QT+ +WE E
Sbjct: 136 NRVSLGVQALNDRDLKFLGRLHDVADALKAIRLARDIFPRMSFDLIYARPDQTVEEWEKE 195

Query: 191 LQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHA 250
           L+ A+SYAVDHLSLYQLTIE+GT FY +HK G L++P    +  LY  TQ IT+  G+ A
Sbjct: 196 LKEAISYAVDHLSLYQLTIEEGTPFYGLHKAGKLIVPDGEQSAVLYEATQEITAREGMPA 255

Query: 251 YEISNHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRK 310
           YE+SNH+  GAES HNL YWRYGDY GIGPGAH R+  G  ++A + E+ PE+WL MV +
Sbjct: 256 YEVSNHARPGAESRHNLTYWRYGDYAGIGPGAHGRLTRGPEKLATATERKPETWLDMVER 315

Query: 311 NGHAVVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLDIECERNLQRQGFIER 370
           +GH ++++E L  E+Q+DE L+MGLRLREG+ +  W+ L+GR+LD + E  L    FIER
Sbjct: 316 DGHGILDEERLGFEEQSDELLLMGLRLREGVDLARWQQLSGRDLDPKREEFLLEHKFIER 375

Query: 371 VQFSRLRCTQRGMTMLDSVIANLAV 395
           +  SRLRCT  GM +LDSV+A+LA 
Sbjct: 376 IGNSRLRCTPSGMLILDSVVADLAC 400

Species: Rhizobium leguminosarum
Genus: Rhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  498 bits (1282), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 228/376 (60%), Positives = 286/376 (76%)

Query: 19  LGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGG 78
            GVYVHWPFC  KCPYCDFNSHVR   V Q  F+ +FL EM  +R L+GPR+++SIF GG
Sbjct: 5   FGVYVHWPFCAAKCPYCDFNSHVRHTPVEQPRFVAAFLKEMAAVRDLSGPRTVTSIFMGG 64

Query: 79  GTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQ 138
           GTPSL++PQ +  ILDGIA++W V   +EIT+EANPSSVE   F+GYR AGVNR+SLGVQ
Sbjct: 65  GTPSLMDPQTVEAILDGIARHWHVPDGIEITMEANPSSVEATRFRGYRAAGVNRVSLGVQ 124

Query: 139 SLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYA 198
           +L ++ L+FLGR HN  +A+ AI LAR IFPRMSFDLIYA P QT+ +WE EL+ A+SYA
Sbjct: 125 ALNDRDLKFLGRLHNVEDALKAIRLAREIFPRMSFDLIYARPNQTVEEWERELKEAVSYA 184

Query: 199 VDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEISNHSF 258
           VDHLSLYQLTIE+GT FY +HK G L++P    +  LY  TQ IT+  G+ AYE+SNH+ 
Sbjct: 185 VDHLSLYQLTIEEGTPFYGLHKAGKLIVPDGEQSAVLYEATQEITADIGMPAYEVSNHAR 244

Query: 259 LGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAVVEK 318
            GAES HNL YWRYGDY GIGPGAH R++VGS ++A + E++PE+WL+ V ++G  +VE+
Sbjct: 245 PGAESRHNLTYWRYGDYAGIGPGAHGRLQVGSGKIATATERNPEAWLQNVEEHGDGMVER 304

Query: 319 EFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLDIECERNLQRQGFIERVQFSRLRC 378
           EFL  E QADE L+MGLRLREG+ +  W+ L+GRN D   E  L   GFIER+  SRLRC
Sbjct: 305 EFLDFEAQADELLLMGLRLREGVDLARWQSLSGRNPDPAREEFLIEHGFIERIGNSRLRC 364

Query: 379 TQRGMTMLDSVIANLA 394
           T  GM +LD+V+A+LA
Sbjct: 365 TPSGMLILDAVVADLA 380

Species: Sinorhizobium medicae
Genus: Sinorhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  498 bits (1281), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 222/381 (58%), Positives = 284/381 (74%)

Query: 15  GSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSI 74
           G    G+Y+HWPFC  KCPYCDFNSHVR  K+ Q  F Q+FL EM+ MR ++GP++++SI
Sbjct: 13  GEPGFGIYIHWPFCAAKCPYCDFNSHVRHQKIDQPRFTQAFLKEMETMRAMSGPKTVTSI 72

Query: 75  FFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRIS 134
           F GGGTPSL++P  +  IL+GIA+ WTV   +EIT+EANP+SVE   F+GYR AGVNR+S
Sbjct: 73  FLGGGTPSLMDPATVGAILEGIARYWTVPRGIEITMEANPTSVEAERFRGYRSAGVNRVS 132

Query: 135 LGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRA 194
           LGVQ+L +  L+FLGR H+  +A+ A+ LAR IFPRMSFDLIYA P QT+  W+ EL+ A
Sbjct: 133 LGVQALNDADLKFLGRMHSVEDALKAVRLAREIFPRMSFDLIYARPNQTIADWDAELKLA 192

Query: 195 LSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEIS 254
           +SYAVDHLSLYQLTIE+GT F+ +HK G ++ P E  A  LY  TQ IT   GL AYE+S
Sbjct: 193 ISYAVDHLSLYQLTIEEGTPFFGLHKAGKIITPDEEHAAQLYEATQEITEREGLPAYEVS 252

Query: 255 NHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHA 314
           NH+  GAES HNL YWRYGDY GIGPGAH R+  G  ++A + EKHPE+WL  V +NGH 
Sbjct: 253 NHARPGAESRHNLTYWRYGDYAGIGPGAHGRLTRGHEKLATATEKHPETWLSAVEQNGHG 312

Query: 315 VVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLDIECERNLQRQGFIERVQFS 374
           +V ++ L SE+QADE L+MGLRLREG+ +  W+ L+GR+ D   E+ L   GFIER+  S
Sbjct: 313 MVIQDALGSEEQADELLLMGLRLREGVDLARWQQLSGRDPDPVREQFLLEHGFIERLGNS 372

Query: 375 RLRCTQRGMTMLDSVIANLAV 395
           RLRCT +GM +LD+V+A+LA 
Sbjct: 373 RLRCTPKGMLVLDAVVADLAC 393

Species: Agrobacterium vitis
Genus: Agrobacterium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 223/381 (58%), Positives = 287/381 (75%)

Query: 15  GSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSI 74
           G    G+Y+HWPFC  KCPYCDFNSHVR   V QE F  +FL EM+ MR L+GPR ++SI
Sbjct: 19  GDPGFGIYLHWPFCAAKCPYCDFNSHVRHRPVDQERFTAAFLREMEHMRTLSGPRVVTSI 78

Query: 75  FFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRIS 134
           F GGGTPSL++PQ +  +LDGI++ W V   +EIT+EANPSSVE   F+GYR AGVNR+S
Sbjct: 79  FMGGGTPSLMDPQTVGALLDGISRFWHVPDGIEITMEANPSSVEAERFRGYRAAGVNRVS 138

Query: 135 LGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRA 194
           LGVQ+L ++ L+FLGR H+ ++A+ AI LAR IFPRMSFDLIYA P QT+ +W+ EL+ A
Sbjct: 139 LGVQALNDRDLKFLGRLHDVADALKAIRLAREIFPRMSFDLIYARPNQTVAEWDAELKEA 198

Query: 195 LSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEIS 254
           +SYAVDHLSLYQLTIE+GT FY +HK G L++P    +  LY  TQ IT  +G+ AYE+S
Sbjct: 199 VSYAVDHLSLYQLTIEEGTPFYGLHKAGKLIVPDGEHSAVLYEATQEITERYGMPAYEVS 258

Query: 255 NHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHA 314
           NH+  GAES HNL YWRYGDY GIGPGAH R+  G+ ++A + E+HPE+WL+ V + GH 
Sbjct: 259 NHARPGAESRHNLTYWRYGDYAGIGPGAHGRLTRGASKLATATERHPETWLETVEREGHG 318

Query: 315 VVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLDIECERNLQRQGFIERVQFS 374
           +V++E L  ++QADE L+MGLRLREGI +  W  L+GR+LD E E  L + GF+ER+  S
Sbjct: 319 MVDQELLGVDEQADELLLMGLRLREGIDLARWSDLSGRDLDPEKEEFLLQHGFVERLGNS 378

Query: 375 RLRCTQRGMTMLDSVIANLAV 395
           RLRCT  GM +LD+V+A+LA 
Sbjct: 379 RLRCTPSGMLILDAVVADLAC 399

Species: Agrobacterium tumefaciens
Genus: Agrobacterium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 222/380 (58%), Positives = 285/380 (75%)

Query: 15  GSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSI 74
           G    GVYVHWPFC  KCPYCDFNSHVR   V QE F  +FL EM  MR + GP++++SI
Sbjct: 12  GEPGFGVYVHWPFCAAKCPYCDFNSHVRHQPVDQERFTAAFLKEMASMRAIGGPKTVTSI 71

Query: 75  FFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRIS 134
           F GGGTPSL++P+ +  +LDGIAK+W V   +EIT+EANPSSVE   F+GYR AGVNR+S
Sbjct: 72  FLGGGTPSLMKPETVGAVLDGIAKHWHVPDGIEITMEANPSSVEAERFRGYRAAGVNRVS 131

Query: 135 LGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRA 194
           +GVQ+L ++ L+FLGR HN ++A+ AI LAR+IFPRMSFDLIYA P QT+ +WE EL+ A
Sbjct: 132 MGVQALNDRDLKFLGRLHNVADALKAIKLARDIFPRMSFDLIYARPNQTVEEWERELKEA 191

Query: 195 LSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEIS 254
           +SYAVDHLSLYQLTIE+GT FY +HK G L++P  + +  LY  TQ IT   G+ AYE+S
Sbjct: 192 ISYAVDHLSLYQLTIEEGTPFYGLHKAGKLIVPDGDQSALLYEATQEITEREGMPAYEVS 251

Query: 255 NHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHA 314
           NH+  GAES HNL YWRYGDY GIGPGAH R+ +G  ++A + E+ PE+WL++V ++GH 
Sbjct: 252 NHARPGAESRHNLTYWRYGDYAGIGPGAHGRLTLGPKKLATATERKPEAWLELVERDGHG 311

Query: 315 VVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLDIECERNLQRQGFIERVQFS 374
           + ++E L  ++QADE L+MGLRL+EGI +  W+ L+GR  D   E  L   GFIER+  S
Sbjct: 312 IADQEMLGDDEQADELLLMGLRLKEGIDLVRWQQLSGREPDQAREEFLLEHGFIERLGNS 371

Query: 375 RLRCTQRGMTMLDSVIANLA 394
           RLRCT  GM +LDSV+A+LA
Sbjct: 372 RLRCTPAGMLILDSVVADLA 391

Species: Agrobacterium tumefaciens
Genus: Agrobacterium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 222/380 (58%), Positives = 285/380 (75%)

Query: 15  GSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSI 74
           G    G+Y+HWPFC  KCPYCDFNSHVR   V QE F  +FL+EM  MR L+GPR ++SI
Sbjct: 19  GDPGFGIYLHWPFCAAKCPYCDFNSHVRHRPVDQERFTAAFLSEMAKMRALSGPRVVTSI 78

Query: 75  FFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRIS 134
           F GGGTPSL++PQ +  +LDG+++ W V   +EIT+EANPSSVE   F+GYR AGVNR+S
Sbjct: 79  FMGGGTPSLMDPQTVGALLDGVSRFWHVPDGIEITMEANPSSVEAERFRGYRAAGVNRVS 138

Query: 135 LGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRA 194
           LGVQ+L ++ L+FLGR H+ ++A+ AI LAR IFPRMSFDLIYA P QT+ +W+ EL+ A
Sbjct: 139 LGVQALNDRDLKFLGRLHDVADALKAIRLAREIFPRMSFDLIYARPNQTVAEWDAELKEA 198

Query: 195 LSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEIS 254
           +SYAVDHLSLYQLTIE+GT FY +HK G L++P    +  LY  TQ IT  +G+ AYE+S
Sbjct: 199 VSYAVDHLSLYQLTIEEGTPFYGLHKAGKLIVPDGEHSAVLYEATQEITERYGMPAYEVS 258

Query: 255 NHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHA 314
           NH+  GAES HNL YWRYGDY GIGPGAH R+  G+ ++A   E+HPE+WL+ V + GH 
Sbjct: 259 NHARPGAESRHNLTYWRYGDYAGIGPGAHGRLTNGASKLATVTERHPETWLETVEREGHG 318

Query: 315 VVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLDIECERNLQRQGFIERVQFS 374
           +V++E L  ++QADE L+MGLRLREGI +  W  L+GR LD E E  L + GF+ER+  S
Sbjct: 319 MVDQELLGVDEQADELLLMGLRLREGIDLARWSDLSGRELDPEKEEFLLQHGFVERIGNS 378

Query: 375 RLRCTQRGMTMLDSVIANLA 394
           RLRCT  GM +LD+V+A+LA
Sbjct: 379 RLRCTPSGMLILDAVVADLA 398

Species: Agrobacterium sp. H13-3
Genus: Agrobacterium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  495 bits (1274), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 222/385 (57%), Positives = 287/385 (74%)

Query: 11  MTGQGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRS 70
           +   G    GVYVHWPFC  KCPYCDFNSHVR   V QE F  +FL E   +R ++GP++
Sbjct: 16  LPDTGEPGFGVYVHWPFCAAKCPYCDFNSHVRHQPVDQERFAAAFLKETAAVRAMSGPKT 75

Query: 71  ISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGV 130
           ++SIF GGGTPSL++P+ +A ILDGIA++W V   +EIT+EANPSSVE   F+GYR AGV
Sbjct: 76  VTSIFLGGGTPSLMKPETVAAILDGIARHWHVPDGIEITMEANPSSVEAERFRGYRAAGV 135

Query: 131 NRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEME 190
           NR+SLGVQ+L ++ L+FLGR H+ ++A+ AI LAR IFPRMSFDLIYA P QT+ +WE E
Sbjct: 136 NRVSLGVQALNDRDLKFLGRLHDVADALKAIRLAREIFPRMSFDLIYARPDQTVEEWESE 195

Query: 191 LQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHA 250
           L++A+SYAVDHLSLYQLTIE+GT FY +HK G L++P    +  LY  TQ IT+  G+ A
Sbjct: 196 LKQAISYAVDHLSLYQLTIEEGTPFYGLHKAGKLIVPDGEQSAVLYEATQEITAREGMPA 255

Query: 251 YEISNHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRK 310
           YE+SNH+  GAES HNL YWRYGDY GIGPGAH R+  G  ++A + E+ PE+WL MV +
Sbjct: 256 YEVSNHARPGAESRHNLTYWRYGDYAGIGPGAHGRLTRGREKIATATERKPEAWLDMVER 315

Query: 311 NGHAVVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLDIECERNLQRQGFIER 370
           +GH ++++E L  E+Q+DE L+MGLRLREG+ +  W+ L+GR LD + E  L    FIER
Sbjct: 316 DGHGILDEERLGHEEQSDELLLMGLRLREGVDLARWQQLSGRELDPKREEFLLEHKFIER 375

Query: 371 VQFSRLRCTQRGMTMLDSVIANLAV 395
           +  SRLRCT  GM +LDSV+A+LA 
Sbjct: 376 IGNSRLRCTPSGMLILDSVVADLAC 400

Species: Rhizobium etli
Genus: Rhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  614 bits (1587), Expect = e-177
 Identities = 225/376 (59%), Positives = 282/376 (75%), Gaps = 1/376 (0%)

Query: 19  LGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGG 78
            G+YVHWPFC+ KCPYCDFNSHVR   + Q  F  +FL E+      TGPR+++SIFFGG
Sbjct: 5   FGLYVHWPFCLAKCPYCDFNSHVRH-AIDQARFAAAFLRELATEAARTGPRTLTSIFFGG 63

Query: 79  GTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQ 138
           GTPSL++P+ +A +LD IA+ W V+ ++EIT+EANP+SVE   F+GYR AGVNR+SLGVQ
Sbjct: 64  GTPSLMQPETVAALLDAIARLWPVADDIEITLEANPTSVEAGRFRGYRAAGVNRVSLGVQ 123

Query: 139 SLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYA 198
           +L +  LRFLGR H+ +EA+AAI LAR IFPR+SFDLIYA P QT+  W  EL+ ALS A
Sbjct: 124 ALNDADLRFLGRLHSVAEALAAIDLAREIFPRVSFDLIYARPGQTLAAWRAELKEALSLA 183

Query: 199 VDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEISNHSF 258
            DHLSLYQLTIE+GT FY +H  G L+LP E++A DLY LTQ IT+A GL AYEISNH+ 
Sbjct: 184 ADHLSLYQLTIEEGTAFYGLHAAGKLILPDEDLAADLYELTQEITAAAGLPAYEISNHAR 243

Query: 259 LGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAVVEK 318
            GAES HNL YWRYGDY GIGPGAH R+ +G  R A + EK PE+WL+ V +NGH ++E+
Sbjct: 244 PGAESRHNLTYWRYGDYAGIGPGAHGRLTLGGERHATATEKAPEAWLERVERNGHGIIEE 303

Query: 319 EFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLDIECERNLQRQGFIERVQFSRLRC 378
           E L  E++ADEFL+MGLRLREGI +  +  L+GR LD E   +L  +G IER   SRLR 
Sbjct: 304 ERLDPEERADEFLLMGLRLREGIDLARYAALSGRPLDPERLADLIEEGLIERDGGSRLRA 363

Query: 379 TQRGMTMLDSVIANLA 394
           T  G  +LD+V+A+LA
Sbjct: 364 TPAGRLVLDAVVADLA 379

Length = 380

 Score =  382 bits (982), Expect = e-106
 Identities = 162/382 (42%), Positives = 232/382 (60%), Gaps = 9/382 (2%)

Query: 16  SNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIF 75
           +N L +Y+HWPFC+ KCPYCDFNSHV    +    +++S+  E+++ + +   + I SIF
Sbjct: 9   ANDLSIYIHWPFCLSKCPYCDFNSHVAS-TIDHNQWLKSYEKEIEYFKDIIQNKYIKSIF 67

Query: 76  FGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISL 135
           FGGGTPSL+ P  +  I++ I+    + +  EIT+E NP+S E   F+ ++ AG+NR+S+
Sbjct: 68  FGGGTPSLMNPVIVEGIINKISNLAIIDNQTEITLETNPTSFETEKFKAFKLAGINRVSI 127

Query: 136 GVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRAL 195
           GVQSL+E  L+ LGR H+  +AI  I  A  IFPR+SFDLIYA   QT+  W+ EL++A+
Sbjct: 128 GVQSLKEDDLKKLGRTHDCMQAIKTIEAANTIFPRVSFDLIYARSGQTLKDWQEELKQAM 187

Query: 196 SYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEISN 255
             A  H+SLYQLTIEKGT FYK+ K+G+L+LP  + A ++Y  T     +     YEISN
Sbjct: 188 QLATSHISLYQLTIEKGTPFYKLFKEGNLILPHSDAAAEMYEWTNHYLESKKYFRYEISN 247

Query: 256 HSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRV-AISIEKHPESWLKMVRKNGHA 314
           ++ +G E LHNL YW Y  Y+GIGPGAHSR+   S  V AI +   PE WL  V+     
Sbjct: 248 YAKIGQECLHNLTYWNYNSYLGIGPGAHSRIIESSSSVSAIMMWHKPEKWLDAVKTKNVG 307

Query: 315 VVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRN----LDIECERNLQRQGFIER 370
           +     L+ ++  +E LMMGLRL +GI++   E          LD+   ++ Q    I  
Sbjct: 308 IQTNTKLTHQEIIEEILMMGLRLSKGINISTLEQKLNTKLENILDMNNLKHYQALDLIRL 367

Query: 371 VQFSRLRCTQRGMTMLDSVIAN 392
            +   L  T +G+ ML S I  
Sbjct: 368 DENIYL--TDKGL-MLHSYIVP 386

Length = 390

 Score =  310 bits (797), Expect = 3e-85
 Identities = 136/385 (35%), Positives = 208/385 (54%), Gaps = 30/385 (7%)

Query: 19  LGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGG 78
           L +Y+H P+CV+KCPYCDFNSH  + +V ++ ++   L ++     L   R + SIF GG
Sbjct: 7   LSLYIHIPWCVQKCPYCDFNSHALKGEVPEDEYVDHLLADLDADLPLVQGREVHSIFIGG 66

Query: 79  GTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQ 138
           GTPSL   + I  +LDG+      + + EIT+EANP +VE + F GY++AGVNRIS+GVQ
Sbjct: 67  GTPSLFSAEAIQRLLDGVRARLPFAPDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQ 126

Query: 139 SLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSF--DLIYALPKQTMTQWEMELQRALS 196
           S  E+ L+ LGR H   EA  A  LA+ +  R SF  DL++ LP Q++ +   +L++A++
Sbjct: 127 SFSEEKLKRLGRIHGPDEAKRAAKLAQGLGLR-SFNLDLMHGLPDQSLEEALDDLRQAIA 185

Query: 197 YAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEISNH 256
               HLS YQLTIE  TLF         VLP ++   D++     + +A G   YE S +
Sbjct: 186 LNPPHLSWYQLTIEPNTLFGSRPP----VLPDDDALWDIFEQGHQLLTAAGYQQYETSAY 241

Query: 257 SFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIE-KHPESWLKMVRKNGHAV 315
           +  G +  HNLNYWR+GDY+GIG GAH ++     R+  + + KHP  ++          
Sbjct: 242 AKPGYQCQHNLNYWRFGDYLGIGCGAHGKLTFPDGRILRTWKTKHPRGYM---------- 291

Query: 316 VEKEFLSSEQQAD------EFLMMGLRLREGISVKDWEMLAGRNLDI---ECERNLQRQG 366
            +  +L  ++  +      EF M   RL E     D+E   G    +   + +  L  QG
Sbjct: 292 -QGRYLDGQRDVEAADRPFEFFMNRFRLLEAAPRADFEAYTGLPESVIRPQLDEALA-QG 349

Query: 367 FIERVQFSRLRCTQRGMTMLDSVIA 391
           ++        + T+ G   L+ ++ 
Sbjct: 350 YL-TETADHWQITEHGKLFLNDLLE 373

Length = 378

 Score =  309 bits (793), Expect = 1e-84
 Identities = 131/371 (35%), Positives = 210/371 (56%), Gaps = 16/371 (4%)

Query: 19  LGVYVHWPFCVKKCPYCDFNSHVRRYKVG--QENFIQSFLTEMQWMRQLTGPRSISSIFF 76
           L +YVH+P+CV+KCPYCDFNSH  +      +  ++ +   +++    L   R + ++F 
Sbjct: 20  LSLYVHFPWCVRKCPYCDFNSHEWKDGGAIPEAAYLDALRADLEQALPLVWGRQVHTVFI 79

Query: 77  GGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLG 136
           GGGTPSL+    +  +L  +     +  + EIT+EANP + E   F  +R +GVNR+S+G
Sbjct: 80  GGGTPSLLSAAGLDRLLSDVRALLPLDPDAEITLEANPGTFEAEKFAQFRASGVNRLSIG 139

Query: 137 VQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRALS 196
           +QS  +  L+ LGR H+ +EA AAI +A   F   + DL+YALP QT+ +   +++ AL+
Sbjct: 140 IQSFNDAHLKALGRIHDGAEARAAIEIAAKHFDNFNLDLMYALPGQTLDEALADVETALA 199

Query: 197 YAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEISNH 256
           +   HLSLY LT+E  TLF K        LP ++ + D+ +  ++  +A G   YE+S +
Sbjct: 200 FGPPHLSLYHLTLEPNTLFAKFPP----ALPDDDASADMQDWIEARLAAAGYAHYEVSAY 255

Query: 257 SFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSH-RVAISIE-KHPESWLKMVRKNGHA 314
           +  G +  HNLNYW++GDY+GIG GAH   K+    R+   +  KHP ++L+  +  G A
Sbjct: 256 AKPGRQCRHNLNYWQFGDYLGIGAGAHG--KLSFPDRILRQMRYKHPATYLEQAKA-GTA 312

Query: 315 VVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLDIECERNLQ---RQGFIERV 371
           V E+  + +     EF++  LRL +G+    ++   G  L    E  L    ++G +ER 
Sbjct: 313 VQEEREVGARDLPFEFMLNALRLTDGVPAHLFQERTGLPL-AAIEPQLAAAEQRGLLER- 370

Query: 372 QFSRLRCTQRG 382
             +R+R T  G
Sbjct: 371 DHTRIRPTPLG 381

Length = 394

 Score =  295 bits (757), Expect = 1e-80
 Identities = 130/379 (34%), Positives = 198/379 (52%), Gaps = 21/379 (5%)

Query: 20  GVYVHWPFCVKKCPYCDFNSHVRRYKVGQEN-----FIQSFLTEMQWMRQLTGPRSISSI 74
             Y+H PFC   C YCDFN      KV  +N     ++ + + EM     +     + +I
Sbjct: 3   SAYIHIPFCEHICYYCDFN------KVFIKNQPVDEYLDALIKEMNTY-AIRPFDKLKTI 55

Query: 75  FFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRIS 134
           + GGGTP+ +  + +  +L  I +N  +S   E T EANP  +     Q  + +GVNRIS
Sbjct: 56  YIGGGTPTALSAEQLERLLTAIHRNLPLSGLEEFTFEANPGDLTKEKLQVLKDSGVNRIS 115

Query: 135 LGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI-FPRMSFDLIYALPKQTMTQWEMELQR 193
           LGVQ+  ++ L+ +GR HN  +   AI  A+   F  +S DLIYALP QT+  ++  L +
Sbjct: 116 LGVQTFNDELLKKIGRTHNEEDVYEAIANAKKAGFDNISIDLIYALPGQTIEDFKESLAK 175

Query: 194 ALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEI 253
           AL+  + H S Y L +E  T+FY + + G L LP E++  ++Y        AHG H YEI
Sbjct: 176 ALALDIPHYSAYSLILEPKTVFYNLMRKGKLRLPGEDLEAEMYEYLMDEMEAHGFHQYEI 235

Query: 254 SNHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGH 313
           SN +  G ES HNL YW   +Y G G GA   V  G     I   KH   +LK + + G 
Sbjct: 236 SNFAKPGFESRHNLTYWNNEEYYGFGAGASGYVN-GVRYQNIGPIKH---YLKAINEEGL 291

Query: 314 AVVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLDI---ECERNLQRQGFIER 370
             +E+  L+ ++Q +E + +GLR + G+S   +E   G++ +    E  + LQ QG +E 
Sbjct: 292 PRLEEHVLTKKEQMEEEMFLGLRKKSGVSKARFEEKFGQSFEDVFGETIQELQEQGLLEE 351

Query: 371 VQFSRLRCTQRGMTMLDSV 389
                +R T++G  + + V
Sbjct: 352 DD-DHVRLTKKGKFLGNEV 369

Length = 377

 Score =  277 bits (711), Expect = 3e-75
 Identities = 110/359 (30%), Positives = 177/359 (49%), Gaps = 13/359 (3%)

Query: 19  LGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGG 78
           + +Y+H PFC  KC YCDFNS+  +    +E + Q+   +++     T    + SIF GG
Sbjct: 1   MSLYIHIPFCENKCGYCDFNSYENKSGPKEE-YTQALCQDLKHALSQTDQEPLESIFIGG 59

Query: 79  GTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQ 138
           GTP+ +  +    + + I ++ ++S + EIT EANP  +     +G + AG+NR+SLGVQ
Sbjct: 60  GTPNTLSVEAFERLFESIYQHASLSDDCEITTEANPELITAEWCKGLKGAGINRLSLGVQ 119

Query: 139 SLEEQSLRFLGRNHNASEAIAAIHLARNI-FPRMSFDLIYALPKQTMTQWEMELQRALSY 197
           S  +  L FLGR H+A     AI  A       +S DL+Y LP QT+   + EL+ A   
Sbjct: 120 SFRDDKLLFLGRQHSAKNIAPAIETALKSGIENISLDLMYGLPLQTLNSLKEELKLAKEL 179

Query: 198 AVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEISNHS 257
            ++HLS Y L++E  T F K  K     LP ++       + + I    G   YE+SN++
Sbjct: 180 PINHLSAYALSVEPNTNFEKNAKK----LPDDDSCAHFDEVVREILEGFGFKQYEVSNYA 235

Query: 258 FLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAVVE 317
             G +  HNL YW   DY+G G GAH    V + R      K  ++++K   + G   + 
Sbjct: 236 KAGYQVKHNLAYWGAKDYLGCGAGAHG--CVANERFFAK--KLIKNYIKDPLQRGVETLN 291

Query: 318 KEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLD---IECERNLQRQGFIERVQF 373
           ++ +  + +  E L +GLR   G+    ++   G +     IE  +   +   +     
Sbjct: 292 EKNVPKQDKRLEKLFLGLRCVLGVEKSFFDENKGLSQVKFLIEENKAFIKNNRLINSDS 350

Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo. Length = 360

 Score =  271 bits (696), Expect = 2e-73
 Identities = 137/385 (35%), Positives = 195/385 (50%), Gaps = 24/385 (6%)

Query: 19  LGVYVHWPFCVKKCPYCDFNSHVR---RYKVGQENFIQSFLTEMQWMRQLTG--PRSISS 73
            GVYVH PFC  +C YCDFN++           + ++ +   E++    + G     +S+
Sbjct: 3   FGVYVHVPFCATRCGYCDFNTYTAAELGGGASPDGYLDALRAELELAAAVLGDPAPPVST 62

Query: 74  IFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRI 133
           +F GGGTPSL+  + +A +LD +   + ++   E+T EANP S     F   R AG  R+
Sbjct: 63  VFVGGGTPSLLGAEGLARVLDAVRDTFGLAPGAEVTTEANPESTSPEFFAALRAAGFTRV 122

Query: 134 SLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI-FPRMSFDLIYALPKQTMTQWEMELQ 192
           SLG+QS     L  L R H    A+AA   AR   F  ++ DLIY  P ++   W   L 
Sbjct: 123 SLGMQSAAPHVLAVLDRTHTPGRAVAAAREARAAGFEHVNLDLIYGTPGESDDDWRASLD 182

Query: 193 RALSYAVDHLSLYQLTIEKGT-LFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAY 251
            AL   VDH+S Y L +E GT L  ++ + G+L  P ++V  D Y L  +  SA G   Y
Sbjct: 183 AALEAGVDHVSAYALIVEDGTALARRVRR-GELPAPDDDVLADRYELADARLSAAGFDWY 241

Query: 252 EISNHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHR---VAISIEKHPESWLKMV 308
           E+SN +  G E  HNL YWR GD+ G GPGAHS   VG  R   V     KHP ++   +
Sbjct: 242 EVSNWARPGGECRHNLGYWRGGDWWGAGPGAHSH--VGGVRWWNV-----KHPAAYAARL 294

Query: 309 RKNGHAVVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLDIECERNLQRQGFI 368
                 V  +E L +E +  E +M+GLRLREG+ +   +  A R       R +   G +
Sbjct: 295 AAGALPVAGREVLDAEDRHVERVMLGLRLREGLPLALLDA-AERA---RAAR-VVADGLL 349

Query: 369 ERVQFSRLRCTQRGMTMLDSVIANL 393
                 RL  T RG  + D+V+ +L
Sbjct: 350 AAEG-GRLVLTLRGRLLADAVVRDL 373

Length = 375

 Score =  269 bits (691), Expect = 7e-73
 Identities = 123/379 (32%), Positives = 205/379 (54%), Gaps = 18/379 (4%)

Query: 17  NSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFF 76
             + +Y+H PFC +KC YCDF S+  +  +    +I++   E+   R  T  + I SIF 
Sbjct: 2   KEISLYIHIPFCKQKCLYCDFPSYSGKEDL-MMEYIKALSKEI---RNSTKNKKIKSIFI 57

Query: 77  GGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLG 136
           GGGTP+ +  + +  IL    K      ++E T+E NP +      +  +  GVNR+S+G
Sbjct: 58  GGGTPTYLSLEALE-ILKETIKKLNKKEDLEFTVEGNPGTFTEEKLKILKSMGVNRLSIG 116

Query: 137 VQSLEEQSLRFLGRNHNASEAIAAIHLARNI-FPRMSFDLIYALPKQTMTQWEMELQRAL 195
           +Q+ +   L++LGR H   E +    LAR + F  ++ DL++ LP QT+  W+  L++ +
Sbjct: 117 LQAWQNSLLKYLGRIHTFEEFLENYKLARKLGFNNINVDLMFGLPNQTLEDWKETLEKVV 176

Query: 196 SYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEISN 255
               +H+S Y L IE+GT FY ++++G L LP E    ++Y+ T       G H YEISN
Sbjct: 177 ELNPEHISCYSLIIEEGTPFYNLYENGKLKLPDEEEEREMYHYTIEFLKEKGYHQYEISN 236

Query: 256 HSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAV 315
            +  G E  HNL YW   +YIG G GAHS V    +    +IEK    ++K + +N  AV
Sbjct: 237 FAKPGKECRHNLVYWDLEEYIGCGAGAHSYVNGKRYENISNIEK----YIKEINENNSAV 292

Query: 316 VEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNL-----DIECERNLQRQGFIER 370
            E    S +   +EF+ MGLR  +GI ++D++   G+N+     ++   + + + G +  
Sbjct: 293 EEIHKNSIKDNMEEFMFMGLRKIKGICIEDFKKRFGKNIYEVYGEV-INKYI-KLGLLIE 350

Query: 371 VQFSRLRCTQRGMTMLDSV 389
            +  R+  ++RG+ + +S+
Sbjct: 351 -KEGRIYLSERGIEVSNSI 368

Length = 374

 Score =  240 bits (614), Expect = 6e-64
 Identities = 127/388 (32%), Positives = 203/388 (52%), Gaps = 23/388 (5%)

Query: 21  VYVHWPFCVKKCPYCDFNSHV--RRYKVGQENFIQSFLTEMQWMRQ-----LTGPRSISS 73
            Y+H PFC ++C YCDF   V   R + G    I+ ++   + + Q      +  + + +
Sbjct: 13  AYIHIPFCRRRCFYCDFPISVVGDRTRGGTSGLIEEYV---EVLCQEIAITPSFGQPLQT 69

Query: 74  IFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRI 133
           +FFGGGTPSL+  + +  IL  + + + ++ + EI++E +P + ++   QGYR  GVNR+
Sbjct: 70  VFFGGGTPSLLSVEQLERILTTLDQRFGIAPDAEISLEIDPGTFDLEQLQGYRSLGVNRV 129

Query: 134 SLGVQSLEEQSLRFLGRNHNASEAIAAI-HLARNIFPRMSFDLIYALPKQTMTQWEMELQ 192
           SLGVQ+ +++ L   GR+H   +  AA+  + +      S DLI  LP QT+  W+  L+
Sbjct: 130 SLGVQAFQDELLALCGRSHRVKDIFAAVDLIHQAGIENFSLDLISGLPHQTLEDWQASLE 189

Query: 193 RALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYE 252
            A++    HLS Y L +E GT F K ++ G   LPS+     +Y L Q I +  G   YE
Sbjct: 190 AAIALNPTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQAGYEHYE 249

Query: 253 ISNHSFLGAESLHNLNYWRYGDYIGIGPGAHSRV---KVGSHRVAISIEKHPESWLKMVR 309
           ISN++  G +  HN  YW    Y G G GA S V   +    R      K    W++ + 
Sbjct: 250 ISNYAKPGYQCRHNRVYWENRPYYGFGMGAASYVNGQRFTRPRT----RKEYYQWVEALI 305

Query: 310 KNGHAVVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLD---IECERNLQRQG 366
            NG  +++ E  S E +  E LM+GLRL EG+S+       G+ +    ++C +   +QG
Sbjct: 306 ANG-GLIDGEPSSPEDELLETLMLGLRLAEGVSLSALTERFGKEIVEQILQCLQPYFQQG 364

Query: 367 FIERVQFSRLRCTQ-RGMTMLDSVIANL 393
           ++E     RLR T   G    ++V+A+L
Sbjct: 365 WVELEGDRRLRLTDPEGFLFSNTVLASL 392

Length = 400

 Score =  127 bits (320), Expect = 6e-30
 Identities = 94/404 (23%), Positives = 164/404 (40%), Gaps = 53/404 (13%)

Query: 13  GQGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFL----TEMQWMRQLTGP 68
            +  ++L +Y+H PFC  +C +C+  +           FI S+L     + + + +   P
Sbjct: 34  REYEDALSLYIHIPFCEMRCGFCNLFT----RTGADAEFIDSYLDALIRQAEQVAEALAP 89

Query: 69  RSISSIFFGGGTPSLIEPQNIALILDGIAKNWTV-SSNVEITIEANPSSVEVNNFQGYRK 127
              +S   GGGTP+L+    +  + D + +   V   N+  ++E +P++           
Sbjct: 90  ARFASFAVGGGTPTLLNAAELEKLFDSVERVLGVDLGNIPKSVETSPATTTAEKLALLAA 149

Query: 128 AGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI-FPRMSFDLIYALPKQTMTQ 186
            GVNR+S+GVQS  +  L  L R    ++   A+   R   FP ++ DLIY +P QT   
Sbjct: 150 RGVNRLSIGVQSFHDSELHALHRPQKRADVHQALEWIRAAGFPILNIDLIYGIPGQTHAS 209

Query: 187 WEMELQRALSYAVDHLSLYQLTIEKGT-LFYKMHKDGDLVLPSENVAVDLYNLTQSITSA 245
           W   L +AL Y  + L LY L +   T L  +     D  L        LY L + +   
Sbjct: 210 WMESLDQALVYRPEELFLYPLYVRPLTGLGRRARAWDDQRL-------SLYRLARDLLLE 262

Query: 246 HGLHAYE-ISNHSFLGAESLHNLNYWRYGDY-------IGIGPGAHS---------RVKV 288
            G   Y   S   F   ++           Y       +G+G GA S            V
Sbjct: 263 AG---YTQTSMRMFRRNDA----PDKGAPAYSCQTDGMLGLGCGARSYTGNLHYSSPYAV 315

Query: 289 GSHRVAISIEKHPESWLKMVRKNGHAVVEKEF-LSSEQQADEFLMMGLRLREGISVKDWE 347
               +   I+ +       +      V E  + LS ++    F++  L   +G+ + D+ 
Sbjct: 316 NQQTIRSIIDDY-------IATPDFTVAEHGYLLSEDEMKRRFIIKSLLQAQGLDLADYR 368

Query: 348 MLAGRNLDIECE--RNLQRQGFIERVQFSRLRCTQRGMTMLDSV 389
              G +   +      L  +G++E+    RLR T+ G+ + D++
Sbjct: 369 QRFGSDPLRDFPELELLIDRGWLEQ-NGGRLRLTEEGLALSDAI 411

Length = 430

 Score =  356 bits (915), Expect = 5e-99
 Identities = 149/383 (38%), Positives = 216/383 (56%), Gaps = 12/383 (3%)

Query: 17  NSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGP-RSISSIF 75
             L +Y+H PFCV KCPYCDFNSHV +     + ++ + L E++ +  L G  R + +I+
Sbjct: 33  KPLSLYIHIPFCVSKCPYCDFNSHVTKRGQPVDEYLDALLEEIELVAALLGGQREVKTIY 92

Query: 76  FGGGTPSLIEPQNIALILDGIAKNWT-VSSNVEITIEANPSSVEVNNFQGYRKAGVNRIS 134
           FGGGTPSL+ P+ +  +L  + + +  +  + EITIEANP +VE   F+  ++AGVNRIS
Sbjct: 93  FGGGTPSLLSPEQLERLLKALRELFNDLDPDAEITIEANPGTVEAEKFKALKEAGVNRIS 152

Query: 135 LGVQSLEEQSLRFLGRNHNASEAIAAIHLARN-IFPRMSFDLIYALPKQTMTQWEMELQR 193
           LGVQS  ++ L+ LGR H+  EA  A+ LAR   F  ++ DLIY LP QT+   + +L++
Sbjct: 153 LGVQSFNDEVLKALGRIHDEEEAKEAVELARKAGFTSINIDLIYGLPGQTLESLKEDLEQ 212

Query: 194 ALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEI 253
           AL    DHLSLY L IE GT F +    G   LP E+   D+Y L + +    G   YEI
Sbjct: 213 ALELGPDHLSLYSLAIEPGTKFAQRKIKGK-ALPDEDEKADMYELVEELLEKAGYRQYEI 271

Query: 254 SNHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGH 313
           SN +  G E  HNL YW   DY+GIG GAH R+           +K+ +++L+ V + G 
Sbjct: 272 SNFAKPGGECRHNLQYWETKDYLGIGAGAHGRI----GGTRYQNKKNLKTYLEAVDEGGL 327

Query: 314 AVVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRN---LDIECERNLQRQGFIER 370
            +VE E L+ +    E L++GLRL  G+ + + E   G       +E    L   G +E 
Sbjct: 328 PLVEGEELTPDDLIREALILGLRLNFGVDLAELEERFGIFKFAEILELLAELIADGLLEL 387

Query: 371 VQFSRLRCTQRGMTMLDSVIANL 393
               RLR T++G  +L S+    
Sbjct: 388 DG-DRLRLTEKGRLLLRSIAEAF 409

Length = 416

 Score =  222 bits (567), Expect = 1e-58
 Identities = 111/337 (32%), Positives = 180/337 (53%), Gaps = 17/337 (5%)

Query: 15  GSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQE---NFIQSFLTE-MQWMRQLTGPRS 70
           G + L +Y+H PFC KKC YC F  +   YK  +E    +  + L E ++ +  L     
Sbjct: 3   GKSPLALYIHIPFCTKKCHYCSF--YTIPYK--EESVSLYCNAVLKEGLKKLAPLRCSHF 58

Query: 71  ISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGV 130
           I ++FFGGGTPSL+ P  I  IL  +          EIT+EANP ++  +  +     G+
Sbjct: 59  IDTVFFGGGTPSLVPPALIQDILKTLEAP----HATEITLEANPENLSESYIRALALTGI 114

Query: 131 NRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI-FPRMSFDLIYALPKQTMTQWEM 189
           NRIS+GVQ+ ++  L+ LGR H++S+AI A+       F  +S DLIY LP Q+++ + +
Sbjct: 115 NRISIGVQTFDDPLLKLLGRTHSSSKAIDAVQECSEHGFSNLSIDLIYGLPTQSLSDFIV 174

Query: 190 ELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLH 249
           +L +A++  + H+SLY LTI+  T FYK  K     +  E +  ++    + + ++ G  
Sbjct: 175 DLHQAITLPITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGFT 234

Query: 250 AYEISNHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVR 309
            YE+++++   A+S HN  YW    ++G+G  A   +  G     +S   H   +L+ +R
Sbjct: 235 RYELASYAKPQAQSKHNTYYWTDRPFLGLGVSASQYLH-GIRSKNLSRISH---YLRALR 290

Query: 310 KNGHAVVEKEFLSSEQQADEFLMMGLRLREGISVKDW 346
           KN       E L   ++  E L + LRL EGI + D+
Sbjct: 291 KNLPTQESSEELPPNERIKEALALRLRLCEGIPLADF 327

Length = 370

 Score =  220 bits (562), Expect = 6e-58
 Identities = 114/323 (35%), Positives = 163/323 (50%), Gaps = 23/323 (7%)

Query: 22  YVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTP 81
           Y+H PFC  KC YC FNS+  ++ + ++ ++Q+   ++++  +      I S+F GGGTP
Sbjct: 4   YIHIPFCESKCGYCAFNSYENKHDL-KKEYMQALCLDLKFELEQFTDEKIESVFIGGGTP 62

Query: 82  SLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLE 141
           S +  +    I + I+    +S + EIT EANP+S      +G +  GVNRIS GVQS  
Sbjct: 63  STVSAKFYEPIFEIISPY--LSKDCEITTEANPNSATKAWLKGMKNLGVNRISFGVQSFN 120

Query: 142 EQSLRFLGRNHNASEAIAAIHLARNI-FPRMSFDLIYALPKQTMTQWEMELQRALSYAVD 200
           E  L+FLGR H+  + I AI  A+   F  +S DLIY  P       + EL+ A    ++
Sbjct: 121 EDKLKFLGRIHSQKQIIKAIENAKKAGFENISIDLIYDTPLDNKKLLKEELKLAKELPIN 180

Query: 201 HLSLYQLTIEKGTLFY-KMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEISNHSFL 259
           HLS Y LTIE+ T F+ K HK  D     EN+A       + +    G   YEISN    
Sbjct: 181 HLSAYSLTIEENTPFFEKNHKKKD----DENLA---KFFIEQL-EELGFKQYEISNFG-K 231

Query: 260 GAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAVVEKE 319
             +  HNL YW+  DY+G G GA   V         ++E + ++ LK          E E
Sbjct: 232 NYQCKHNLGYWQGKDYLGCGAGAVGFVANKRFYPKKNLENYIKNPLK---------REIE 282

Query: 320 FLSSEQQADEFLMMGLRLREGIS 342
            LS E    E L +GLR   G+ 
Sbjct: 283 TLSEEDLRLEKLFLGLRSIVGVD 305

Length = 350

 Score =  149 bits (379), Expect = 8e-37
 Identities = 92/327 (28%), Positives = 154/327 (47%), Gaps = 29/327 (8%)

Query: 21  VYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGT 80
           +Y+H PFC   C +CDF   ++  +   +   + FL  ++   +    +   +I+ GGGT
Sbjct: 9   LYIHIPFCQYICTFCDFKRILKTPQ--TKKIFKDFLKNIKMHIKNFKIKQFKTIYLGGGT 66

Query: 81  PSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSL 140
           P+ +  Q + ++L  I     V +N E TIE NP  +  +     +K  VNRISLGVQS+
Sbjct: 67  PNCLNDQLLDILLSTIKP--YVDNNCEFTIECNPELITQSQINLLKKNKVNRISLGVQSM 124

Query: 141 EEQSLRFLGRNHNASEAIAAIH-LARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYAV 199
               L+ L R H   ++  AI+ L +N    +S D +Y LP   +   +      L + +
Sbjct: 125 NNNILKQLNRTHTIQDSKEAINLLHKNGIYNISCDFLYCLPILKLKDLDEVFNFILKHKI 184

Query: 200 DHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGL--HAYEISNHS 257
           +H+S Y L I++G++  K H        + +   +   L       + L    YE+SN +
Sbjct: 185 NHISFYSLEIKEGSILKKYHY-------TIDEDKEAEQLNYIKAKFNKLNYKRYEVSNWT 237

Query: 258 FLGA-ESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAVV 316
                 S HNL YWR  D+  IG GAH              E + E +     +N   ++
Sbjct: 238 NNFKYISKHNLAYWRTKDWAAIGWGAH------------GFENNIEYFFDGSIQN--WIL 283

Query: 317 EKEFLSSEQQADEFLMMGLRLREGISV 343
            K+ L+  +   + L+MGLRL++G+ +
Sbjct: 284 IKKVLTDHELYQQILIMGLRLKDGLDL 310

Length = 353

 Score =  163 bits (415), Expect = 7e-41
 Identities = 61/221 (27%), Positives = 117/221 (52%), Gaps = 7/221 (3%)

Query: 18  SLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWM-RQLTGPRSISSIFF 76
            L +Y+    C ++C +C F S   + +     ++++ + E++ +  +      + ++F 
Sbjct: 1   PLALYIITRGCPRRCTFCSFPSARGKLR---SRYLEALVREIELLAEKGEKEILVGTVFI 57

Query: 77  GGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLG 136
           GGGTP+L+ P+ +  +L+ I +   ++ +VEITIE  P ++     +  ++AGVNR+SLG
Sbjct: 58  GGGTPTLLSPEQLEELLEAIREILGLADDVEITIETRPGTLTEELLEALKEAGVNRVSLG 117

Query: 137 VQSLEEQSLRFLGRNHNASEAIAAIHLARNIFP-RMSFDLIYALPKQTMTQWEMELQRAL 195
           VQS  ++ L+ + R H   + + A+   R   P ++S DLI  LP +T   +E  L+   
Sbjct: 118 VQSGSDEVLKAINRGHTVEDVLEAVEKLREAGPIKVSTDLIVGLPGETEEDFEETLKLLK 177

Query: 196 SYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLY 236
               D +S++ L+   GT   K++K   L  P +   ++L 
Sbjct: 178 ELGPDRVSIFPLSPRPGTPLAKLYK--RLKPPDKEERLELL 216

This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases. Length = 216

 Score =  131 bits (331), Expect = 4e-31
 Identities = 60/245 (24%), Positives = 127/245 (51%), Gaps = 14/245 (5%)

Query: 16  SNSLGVYVHWPFCVKKCPYCDFNSH-VRRYKVGQENFIQSFLTEM----QWMRQLTGPRS 70
            N + +Y+  PFC  +C YC F S+ ++ YK   E ++++   E+    +++++      
Sbjct: 161 KNEVSIYIGIPFCPTRCLYCSFPSYPIKGYKGLVEPYLEALHYEIEEIGKYLKEK--GLK 218

Query: 71  ISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNV-EITIEAN-PSSVEVNNFQGYRKA 128
           I++I+FGGGTP+ +  + +  +L+ I +N+    NV E T+EA  P ++     +  +K 
Sbjct: 219 ITTIYFGGGTPTSLTAEELERLLEEIYENFPDVKNVKEFTVEAGRPDTITEEKLEVLKKY 278

Query: 129 GVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI-FPRMSFDLIYALPKQTMTQW 187
           GV+RIS+  Q++ +++L+ +GR+H   + I   HLAR + F  ++ DLI  LP + + + 
Sbjct: 279 GVDRISINPQTMNDETLKAIGRHHTVEDIIEKFHLAREMGFDNINMDLIIGLPGEGLEEV 338

Query: 188 EMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLV-LPSENVAVDLYNLTQSITSAH 246
           +  L+       + L+++ L I++ +   ++ ++ +   +        +    +      
Sbjct: 339 KHTLEEIEKLNPESLTVHTLAIKRAS---RLTENKEKYKVADREEIEKMMEEAEEWAKEL 395

Query: 247 GLHAY 251
           G   Y
Sbjct: 396 GYVPY 400

Length = 488

 Score =  118 bits (297), Expect = 3e-27
 Identities = 57/209 (27%), Positives = 95/209 (45%), Gaps = 18/209 (8%)

Query: 21  VYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQ--LTGPRSISSIFFGG 78
           +Y+H PFC   C +C F  +    +     +  + + E+       LT    I +++FGG
Sbjct: 64  LYIHIPFCRTHCTFCGFFQNAWNPEAVAR-YTDALIRELAMEADSPLTQSAPIHAVYFGG 122

Query: 79  GTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQ 138
           GTP+ +  +++A ++  + +   ++ + EIT+E   +  +         AG NR S+GVQ
Sbjct: 123 GTPTALSAEDLARLITALREYLPLAPDCEITLEGRINGFDDEKADAALDAGANRFSIGVQ 182

Query: 139 SLEEQSLRFLGRNHNASEAIAAIH-LARNIFPRMSF--DLIYALPKQTMTQWEMELQRAL 195
           S   Q  R  GR  +  E +A +  L      R +   DLI+ LP QT   W+ +L    
Sbjct: 183 SFNTQVRRRAGRKDDREEVLARLEELVAR--DRAAVVCDLIFGLPGQTPEIWQQDLAIVR 240

Query: 196 SYAVDHLSLYQL----------TIEKGTL 214
              +D + LY L           +EKG L
Sbjct: 241 DLGLDGVDLYALNLLPGTPLAKAVEKGKL 269

Length = 449

 Score =  117 bits (294), Expect = 7e-27
 Identities = 60/212 (28%), Positives = 104/212 (49%), Gaps = 3/212 (1%)

Query: 19  LGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQL-TGPRSISSIFFG 77
           L +YVH PFC K C +C  N  + R K   + ++ +   E+  +  L  G R +S + +G
Sbjct: 50  LSLYVHIPFCHKACYFCGCNVIITRQKHKADPYLDALEKEIALVAPLFDGNRHVSQLHWG 109

Query: 78  GGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGV 137
           GGTP+ + P+ I+ ++  I +N+  +++ EI+IE +P  +  +     R  G NR+S GV
Sbjct: 110 GGTPTYLSPEQISRLMKLIRENFPFNADAEISIEIDPRYITKDVIDALRDEGFNRLSFGV 169

Query: 138 QSLEEQSLRFLGRNHNASEAIAAIHLARNI-FPRMSFDLIYALPKQTMTQWEMELQRALS 196
           Q   ++  + + R          ++ AR   F  ++ DLIY LPKQT   +   L++   
Sbjct: 170 QDFNKEVQQAVNRIQPEEMIFELMNHAREAGFTSINIDLIYGLPKQTKESFAKTLEKVAE 229

Query: 197 YAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPS 228
              D L+++        +     K  +  LPS
Sbjct: 230 LNPDRLAVFNYA-HVPWVKPAQRKIPEAALPS 260

This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein. Length = 455

 Score = 64.9 bits (158), Expect = 4e-11
 Identities = 52/243 (21%), Positives = 88/243 (36%), Gaps = 44/243 (18%)

Query: 31  KCPYCDFN-------SHVRRYKV---GQENFIQSFLTEMQWMRQL-TGPRSISS---IFF 76
           +C +C          S+           +N    +      ++QL T   +      I  
Sbjct: 81  RCVFCPGGPDKDSPQSYTGEEPAALRAIKNRYDPYEQVRARLKQLETIGHTSDKVELIIM 140

Query: 77  GGGTPSL-IEPQN-------------IALILDGIAKNWT-VSSNVEITIEANPSSV---E 118
           GG   +L +E Q                 + +   KN T     V ITIE  P  +    
Sbjct: 141 GGTFTALSLEYQEWFLKVALKAMNDFGYDLEEAQRKNETAELRCVGITIETRPDYIDEEH 200

Query: 119 VNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYA 178
           ++    Y   GV R+ LGVQS+ +  L    R H   + + A  L ++   ++ + ++  
Sbjct: 201 LDQMLKY---GVTRVELGVQSIYDDVLERTKRGHTVEDVVEATRLLKDAGFKVGYHIMPG 257

Query: 179 LPKQTMTQWEMELQRAL------SYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVA 232
           LP       E +L+          +  D L +Y   + +GT  Y+M K G     +   A
Sbjct: 258 LPGSDF---ERDLESFREIFEDPRFRPDMLKIYPTLVIEGTELYEMWKRGLYKPYTTEEA 314

Query: 233 VDL 235
           V+L
Sbjct: 315 VEL 317

Length = 515

 Score = 49.3 bits (117), Expect = 2e-06
 Identities = 35/199 (17%), Positives = 73/199 (36%), Gaps = 14/199 (7%)

Query: 28  CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQ 87
           C   C +C   +   R               +  + +      +  +   GG P L    
Sbjct: 7   CNLNCGFCSNPASKGRG----PESPPEIEEILDIVLEAKERG-VEVVILTGGEPLL--YP 59

Query: 88  NIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRF 147
            +A +L  + K        EI+IE N + +     +  ++ G++ + + + S +E+    
Sbjct: 60  ELAELLRRLKK---ELPGFEISIETNGTLLTEELLKELKELGLDGVGVSLDSGDEEVADK 116

Query: 148 L-GRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRAL--SYAVDHLSL 204
           + G   +  E + A+   R     +S  L+  L  +   + ++E    L    + D +SL
Sbjct: 117 IRGSGESFKERLEALKELREAGLGLSTTLLVGLGDEDE-EDDLEELELLAEFRSPDRVSL 175

Query: 205 YQLTIEKGTLFYKMHKDGD 223
           ++L  E+GT          
Sbjct: 176 FRLLPEEGTPLELAAPVVP 194

Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme of the biosynthesis of molybdopterin.. Length = 204

 Score =  117 bits (296), Expect = 5e-27
 Identities = 54/191 (28%), Positives = 99/191 (51%), Gaps = 6/191 (3%)

Query: 19  LGVYVHWPFCVKKCPYCDFNSHV-RRYKVGQENFIQSFLTEMQWMR--QLTGPRSISSIF 75
           L +YVH PFC   C YC  N  + R ++     ++ +   E+  +    L   R +S + 
Sbjct: 50  LSLYVHIPFCRSLCYYCGCNKIITRDHEKADP-YLDALEKEIA-LVAALLGPGRPVSQLH 107

Query: 76  FGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISL 135
           +GGGTP+ + P+ +  ++  + +++  + + EI+IE +P  +++      R+ G NR+SL
Sbjct: 108 WGGGTPTFLSPEQLRRLMALLREHFNFAPDAEISIEIDPRELDLEMLDALRELGFNRLSL 167

Query: 136 GVQSLEEQSLRFLGRNHNASEAIAAIHLARNI-FPRMSFDLIYALPKQTMTQWEMELQRA 194
           GVQ  + +  + + R        A +  AR + F  ++ DLIY LPKQT   +   L++ 
Sbjct: 168 GVQDFDPEVQKAVNRIQPFEFTFALVEAARELGFTSINIDLIYGLPKQTPESFARTLEKV 227

Query: 195 LSYAVDHLSLY 205
           L    D L+++
Sbjct: 228 LELRPDRLAVF 238

Length = 453

 Score =  107 bits (269), Expect = 6e-24
 Identities = 49/207 (23%), Positives = 95/207 (45%), Gaps = 9/207 (4%)

Query: 5   SAYENNMTGQGSN-SLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMR 63
             Y   +   G    + +Y+H PFC   C +C  N+ + +     E ++ + + E++ + 
Sbjct: 36  DTYREWLRQIGPEEPVSLYLHVPFCRSLCWFCGCNTIITQRDAPVEAYVAALIREIRLVA 95

Query: 64  QLTGP-RSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNF 122
                 R +S + +GGGTP+++ P     ++  +   +  +   EI +E +P +V     
Sbjct: 96  ASLPQRRRVSQLHWGGGTPTILNPDQFERLMAALRDAFDFAPEAEIAVEIDPRTVTAEML 155

Query: 123 QGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI----FPRMSFDLIYA 178
           Q     G NR S GVQ  + Q  + + R     E + A      +    F  ++FDLIY 
Sbjct: 156 QALAALGFNRASFGVQDFDPQVQKAINRIQ--PEEMVA-RAVELLRAAGFESINFDLIYG 212

Query: 179 LPKQTMTQWEMELQRALSYAVDHLSLY 205
           LP QT+  +   L + ++ + D ++++
Sbjct: 213 LPHQTVESFRETLDKVIALSPDRIAVF 239

Length = 453

 Score = 83.7 bits (207), Expect = 8e-17
 Identities = 39/175 (22%), Positives = 75/175 (42%), Gaps = 12/175 (6%)

Query: 22  YVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLT--GPRSISSIFFGGG 79
            +  P C  +C YC F S   R K          L+  + + +        +  +   GG
Sbjct: 1   IIITPGCNLRCTYCAFPSIRARGKGR-------ELSPEEILEEAKELARLGVEVVILTGG 53

Query: 80  TPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQS 139
            P L+    +  +L+ + K       + IT+E N + ++    +  ++AG++R+S+ +QS
Sbjct: 54  EPLLLPD--LVELLERLLKL-EELEGIRITLETNGTLLDEELLEELKEAGLDRVSISLQS 110

Query: 140 LEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRA 194
            +++ L+ + R H   E + A+ L R     +  D I  LP +     E  L+  
Sbjct: 111 GDDEVLKIINRGHTFEEVLEALELLREAGIPVVVDNIVGLPGENDEDLEETLELL 165

Radical SAM proteins catalyse diverse reactions, including unusual methylations, isomerisation, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Length = 165

 Score =  114 bits (287), Expect = 5e-26
 Identities = 47/120 (39%), Positives = 64/120 (53%), Gaps = 6/120 (5%)

Query: 267 LNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQ 326
           L YWR GDY+G+GPGAHS +  G  R      K  +++LK V   G  +   E LS E +
Sbjct: 1   LGYWRGGDYLGLGPGAHSFIDGGGVRY--QNVKDLKAYLKAVEAGGLPIERGERLSPEDR 58

Query: 327 ADEFLMMGLRLREGISVKDWEMLAGRNLDIECE---RNLQRQGFIERVQFSRLRCTQRGM 383
             E L++GLRL EG+ +  +E   G + + E E     LQ  G +E +   RLR T RG 
Sbjct: 59  LRERLILGLRLTEGLDLAAFEQRFGLDFEEEYEPLLEKLQEDGLLE-LDDGRLRLTPRGR 117

Members of this family are all oxygen-independent coproporphyrinogen-III oxidases (HemN). This enzyme catalyses the oxygen-independent conversion of coproporphyrinogen-III to protoporphyrinogen-IX, one of the last steps in haem biosynthesis. The function of this domain is unclear, but comparison to other proteins containing a radical SAM domain (pfam04055) suggest it may be a substrate binding domain. Length = 118

 Score = 94.0 bits (234), Expect = 7e-20
 Identities = 71/267 (26%), Positives = 124/267 (46%), Gaps = 19/267 (7%)

Query: 22  YVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTP 81
           Y H PFC   CPYC F+    +    +  FI S   EM+ +++L G     S++ GGGT 
Sbjct: 56  YAHVPFCHTLCPYCSFHRFYFKEDKARAYFI-SLRKEMEMVKEL-GYD-FESMYVGGGTT 112

Query: 82  SLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLE 141
           +++E + +A  L+ +AK   + S  E++ E++P+ ++    +   K  ++R+S+GVQS  
Sbjct: 113 TILEDE-LAKTLE-LAK--KLFSIKEVSCESDPNHLDPPKLKQL-KGLIDRLSIGVQSFN 167

Query: 142 EQSLRFLGRNH---NASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYA 198
           +  L+ + R     +  E    I  A+ +FP ++ DLI+  P QT    + +L  A    
Sbjct: 168 DDILKMVDRYEKFGSGQETFEKIMKAKGLFPIINVDLIFNFPGQTDEVLQHDLDIAKRLD 227

Query: 199 VDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEISNHSF 258
              ++ Y L     T   +    G L    ++     Y   Q I    G +  ++S  +F
Sbjct: 228 PRQITTYPLMKSHQT---RKSVKGSLGASQKDNERQYY---QIINELFGQY-NQLSAWAF 280

Query: 259 LGAESLHNLNY-WRYGDYIGIGPGAHS 284
                     Y   Y +Y+G+G G+ S
Sbjct: 281 SKKNDEGFDEYVIDYDEYLGVGSGSFS 307

Length = 433

 Score = 51.7 bits (124), Expect = 4e-07
 Identities = 37/161 (22%), Positives = 68/161 (42%), Gaps = 16/161 (9%)

Query: 85  EPQNIALILDGIAKNWTVSS-NVEITIEANPS---SVEVNNFQGYRKAGVNRISLGVQSL 140
           E +  + + + I  N T     V +TIE  P       ++        G  R+ LGVQ++
Sbjct: 171 ELKGNSTLEEAIRINETSKHRCVGLTIETRPDYCREEHIDRMLKL---GATRVELGVQTI 227

Query: 141 EEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQ--RAL--- 195
               L    R H   + + A  L R+   ++ + ++  LP  +    E +L+  R +   
Sbjct: 228 YNDILERTKRGHTVRDVVEATRLLRDAGLKVVYHIMPGLPGSSF---ERDLEMFREIFED 284

Query: 196 -SYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDL 235
             +  D L +Y   + +GT  Y++ K G+    +   AV+L
Sbjct: 285 PRFKPDMLKIYPTLVTRGTELYELWKRGEYKPYTTEEAVEL 325

The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases. Length = 522

 Score = 43.0 bits (101), Expect = 1e-04
 Identities = 35/134 (26%), Positives = 57/134 (42%), Gaps = 5/134 (3%)

Query: 106 VEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLAR 165
           + ITIE  P      +       G  R+ +GVQS+ E   R   R H       + HLA+
Sbjct: 223 IGITIETRPDYCLKRHLSDMLTYGCTRLEIGVQSVYEDVARDTNRGHTVKAVCESFHLAK 282

Query: 166 N----IFPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKD 221
           +    +   M  DL     ++ + Q++ E     ++  D L +Y   + +GT  Y++ K 
Sbjct: 283 DAGFKVVAHMMPDLPNVGMERDIEQFK-EYFENPAFRPDGLKIYPTLVIRGTGLYELWKT 341

Query: 222 GDLVLPSENVAVDL 235
           G     S +  VDL
Sbjct: 342 GRYKSYSPSALVDL 355

Length = 554

 Score = 49.8 bits (119), Expect = 1e-06
 Identities = 27/103 (26%), Positives = 50/103 (48%)

Query: 133 ISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQ 192
           + LG+Q+  +++L+ + R H+ +  + A+   R    ++   LI  LP +T  +     +
Sbjct: 146 VELGLQTAHDKTLKRINRGHDFACYVDAVKRLRKRGIKVCTHLINGLPGETRDEMLETAK 205

Query: 193 RALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDL 235
                 VD + L+ L + KGT   KM++ G L   S    V+L
Sbjct: 206 IVAELGVDGIKLHPLHVVKGTPMEKMYEKGRLKFLSLEEYVEL 248

Length = 312

 Score = 49.8 bits (119), Expect = 1e-06
 Identities = 24/103 (23%), Positives = 50/103 (48%)

Query: 133 ISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQ 192
           + LG+Q+  +++L+ + R H+ +  + A+  AR    ++   +I  LP +   +     +
Sbjct: 141 VELGLQTAHDKTLKKINRGHDFACYVDAVKRARKRGIKVCSHVILGLPGEDREEMMETAK 200

Query: 193 RALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDL 235
                 VD + ++ L + KGT   KM++ G+L   S    + L
Sbjct: 201 IVSLLDVDGIKIHPLHVVKGTKMAKMYEKGELKTLSLEEYISL 243

This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain. Length = 302