254780628
coproporphyrinogen III oxidase
GeneID in NCBI database: | 8209628 | Locus tag: | CLIBASIA_02575 |
Protein GI in NCBI database: | 254780628 | Protein Accession: | YP_003065041.1 |
Gene range: | +(641905, 643092) | Protein Length: | 395aa |
Gene description: | coproporphyrinogen III oxidase | ||
COG prediction: | [H] Coproporphyrinogen III oxidase and related Fe-S oxidoreductases | ||
KEGG prediction: | coproporphyrinogen III oxidase; K02495 oxygen-independent coproporphyrinogen III oxidase [EC:1.3.99.22] | ||
SEED prediction: | Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB | ||
Pathway involved in KEGG: | Porphyrin and chlorophyll metabolism [PATH:las00860] | ||
Subsystem involved in SEED: | Heme and Siroheme Biosynthesis;
Queuosine-Archaeosine Biosynthesis; Heat shock dnaK gene cluster extended | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 395 | coproporphyrinogen III oxidase [Candidatus Liberibacter | |||
315121829 | 395 | coproporphyrinogen III oxidase [Candidatus Liberibacter | 1 | 0.0 | |
209547615 | 401 | coproporphyrinogen III oxidase [Rhizobium leguminosarum | 1 | 1e-140 | |
116250146 | 400 | coproporphyrinogen III oxidase [Rhizobium leguminosarum | 1 | 1e-139 | |
241202758 | 400 | coproporphyrinogen III oxidase [Rhizobium leguminosarum | 1 | 1e-139 | |
150395235 | 381 | coproporphyrinogen III oxidase [Sinorhizobium medicae W | 1 | 1e-139 | |
222147319 | 393 | coproporphyrinogen III oxidase [Agrobacterium vitis S4] | 1 | 1e-139 | |
159184259 | 399 | coproporphyrinogen III oxidase [Agrobacterium tumefacie | 1 | 1e-138 | |
222084654 | 392 | coproporphyrinogen III oxidase protein [Agrobacterium r | 1 | 1e-138 | |
325291759 | 399 | oxygen-independent coproporphyrinogen III oxidase [Agro | 1 | 1e-138 | |
190890029 | 400 | oxygen-independent coprophorphyrinogen III oxidase [Rhi | 1 | 1e-138 |
>gi|315121829|ref|YP_004062318.1| coproporphyrinogen III oxidase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 395 | Back alignment and organism information |
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Score = 663 bits (1711), Expect = 0.0, Method: Compositional matrix adjust. Identities = 302/394 (76%), Positives = 351/394 (89%) Query: 1 MKYLSAYENNMTGQGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQ 60 MKY +Y +++ SN+LG+YVHWPFC KKCPYCDFNSHVRR + Q +FI+S L EM+ Sbjct: 1 MKYSQSYGDDVVHPDSNTLGIYVHWPFCTKKCPYCDFNSHVRRRAIDQGHFIRSLLVEME 60 Query: 61 WMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVN 120 WMRQL+GPR ISS+FFGGGTPSLI+PQNI+++LD IAKNWT+ SNVEITIEANPSS E Sbjct: 61 WMRQLSGPRLISSVFFGGGTPSLIDPQNISILLDNIAKNWTLPSNVEITIEANPSSTEAG 120 Query: 121 NFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALP 180 +F GYRKAGVNR+SLGVQSLEE++LRFLGRNHN SEA+ AIHLAR+IFPRMSFDLIYALP Sbjct: 121 HFLGYRKAGVNRVSLGVQSLEERALRFLGRNHNVSEAVTAIHLARDIFPRMSFDLIYALP 180 Query: 181 KQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQ 240 Q++ QWEMELQ+ALSYAVDHLSLYQLTIEKGTLFYK+HKDGDLVLP E+++ DLYNLTQ Sbjct: 181 GQSIKQWEMELQKALSYAVDHLSLYQLTIEKGTLFYKLHKDGDLVLPDESLSADLYNLTQ 240 Query: 241 SITSAHGLHAYEISNHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKH 300 IT +GL++YEISNH+ LG+ESLHNL YWRYGDY+GIGPGAHSRVKV S R+A+SIEKH Sbjct: 241 IITREYGLYSYEISNHARLGSESLHNLTYWRYGDYVGIGPGAHSRVKVDSQRIAMSIEKH 300 Query: 301 PESWLKMVRKNGHAVVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLDIECER 360 PE+W+KMV KNGHA+VEKEFLSSEQQADEFLMMG+RLREGI VKDWE LAGR+LDIECER Sbjct: 301 PENWVKMVEKNGHAIVEKEFLSSEQQADEFLMMGMRLREGIEVKDWERLAGRSLDIECER 360 Query: 361 NLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLA 394 LQ QGFIER+ SRLRCTQ GM MLD+++A+L+ Sbjct: 361 RLQEQGFIERINSSRLRCTQLGMVMLDAIVADLS 394 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|209547615|ref|YP_002279532.1| coproporphyrinogen III oxidase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 401 | Back alignment and organism information |
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Score = 503 bits (1294), Expect = e-140, Method: Compositional matrix adjust. Identities = 225/385 (58%), Positives = 292/385 (75%) Query: 11 MTGQGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRS 70 + G GVYVHWPFC KCPYCDFNSHVR V QE F +FL EM +R L+GP++ Sbjct: 17 LPDTGEPGFGVYVHWPFCAAKCPYCDFNSHVRHQPVDQERFASAFLKEMAAVRALSGPKT 76 Query: 71 ISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGV 130 ++SIF GGGTPSL++P+ ++ ILDGIA++W V + +EIT+EANPSSVE F+GYR AGV Sbjct: 77 VTSIFLGGGTPSLMKPETVSAILDGIARHWHVPAGIEITMEANPSSVEAERFRGYRAAGV 136 Query: 131 NRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEME 190 NR+SLGVQ+L+++ L+FLGR H+ ++A+ AI LAR+IFPRMSFDLIYA P QT+ QWE E Sbjct: 137 NRVSLGVQALDDRDLKFLGRLHDVADALKAIRLARDIFPRMSFDLIYARPDQTVEQWERE 196 Query: 191 LQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHA 250 L++A+SYAVDHLSLYQLTIE+GT FY +HK G L++P + LY TQ IT+ G+ A Sbjct: 197 LKQAISYAVDHLSLYQLTIEEGTPFYGLHKAGKLIVPDGEQSAVLYEATQEITAREGMPA 256 Query: 251 YEISNHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRK 310 YE+SNH+ GAES HNL YWRYGDY GIGPGAH R+ G ++A + E+ PESWL MV + Sbjct: 257 YEVSNHARPGAESRHNLTYWRYGDYAGIGPGAHGRLTRGPEKIATATERKPESWLDMVER 316 Query: 311 NGHAVVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLDIECERNLQRQGFIER 370 +GH ++++E L E+Q+DE L+MGLRLREG+ + W+ L+GR+LD + E L FIER Sbjct: 317 DGHGILDEERLGYEEQSDELLLMGLRLREGVDLARWQQLSGRDLDPKREEFLLEHKFIER 376 Query: 371 VQFSRLRCTQRGMTMLDSVIANLAV 395 + SRLRCT GM +LDSV+A+LA Sbjct: 377 IGNSRLRCTPSGMLILDSVVADLAC 401 |
Species: Rhizobium leguminosarum Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|116250146|ref|YP_765984.1| coproporphyrinogen III oxidase [Rhizobium leguminosarum bv. viciae 3841] Length = 400 | Back alignment and organism information |
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Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust. Identities = 223/385 (57%), Positives = 291/385 (75%) Query: 11 MTGQGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRS 70 + G GVYVHWPFC KCPYCDFNSHVR V QE F +FLTEM +R ++GP++ Sbjct: 16 LPDTGEPGFGVYVHWPFCAAKCPYCDFNSHVRHQPVDQERFTSAFLTEMAAVRSMSGPKT 75 Query: 71 ISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGV 130 ++SIF GGGTPSL++P+ ++ ILDGIA++W V +EIT+EANPSSVE F+GYR AGV Sbjct: 76 VTSIFLGGGTPSLMKPETVSAILDGIARHWHVPDGIEITMEANPSSVEAERFRGYRAAGV 135 Query: 131 NRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEME 190 NR+SLGVQ+L ++ L+FLGR H+ ++A+ AI LAR+IFPRMSFDLIYA P+QT+ +WE E Sbjct: 136 NRVSLGVQALNDRDLKFLGRLHDVADALKAIRLARDIFPRMSFDLIYARPEQTVEEWEKE 195 Query: 191 LQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHA 250 L+ A+SYAVDHLSLYQLTIE+GT FY +HK G L++P + LY TQ IT+ G+ A Sbjct: 196 LKEAISYAVDHLSLYQLTIEEGTPFYGLHKAGKLIVPDGEQSALLYEATQEITAREGMPA 255 Query: 251 YEISNHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRK 310 YE+SNH+ GAES HNL YWRYGDY GIGPGAH R+ G ++A + E+ PE+WL MV + Sbjct: 256 YEVSNHARPGAESRHNLTYWRYGDYAGIGPGAHGRLTRGPEKLATATERKPETWLDMVER 315 Query: 311 NGHAVVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLDIECERNLQRQGFIER 370 +GH ++++E L E+Q+DE L+MGLRLREG+ + W+ L+GR+LD + E L FIER Sbjct: 316 DGHGILDEERLGFEEQSDELLLMGLRLREGVDLARWQQLSGRDLDPKREEFLLEHKFIER 375 Query: 371 VQFSRLRCTQRGMTMLDSVIANLAV 395 + SRLRCT GM +LDSV+A+LA Sbjct: 376 IGNSRLRCTPSGMLILDSVVADLAC 400 |
Species: Rhizobium leguminosarum Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|241202758|ref|YP_002973854.1| coproporphyrinogen III oxidase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 400 | Back alignment and organism information |
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Score = 498 bits (1283), Expect = e-139, Method: Compositional matrix adjust. Identities = 223/385 (57%), Positives = 290/385 (75%) Query: 11 MTGQGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRS 70 + G GVYVHWPFC KCPYCDFNSHVR V QE F +FLTEM +R ++GP++ Sbjct: 16 LPDTGEPGFGVYVHWPFCAAKCPYCDFNSHVRHQPVDQERFTSAFLTEMAAVRAMSGPKT 75 Query: 71 ISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGV 130 ++SIF GGGTPSL++P+ ++ ILDGIA++W V +EIT+EANPSSVE F+GYR AGV Sbjct: 76 VTSIFLGGGTPSLMKPEAVSAILDGIARHWHVPDGIEITMEANPSSVEAERFRGYRAAGV 135 Query: 131 NRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEME 190 NR+SLGVQ+L ++ L+FLGR H+ ++A+ AI LAR+IFPRMSFDLIYA P QT+ +WE E Sbjct: 136 NRVSLGVQALNDRDLKFLGRLHDVADALKAIRLARDIFPRMSFDLIYARPDQTVEEWEKE 195 Query: 191 LQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHA 250 L+ A+SYAVDHLSLYQLTIE+GT FY +HK G L++P + LY TQ IT+ G+ A Sbjct: 196 LKEAISYAVDHLSLYQLTIEEGTPFYGLHKAGKLIVPDGEQSAVLYEATQEITAREGMPA 255 Query: 251 YEISNHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRK 310 YE+SNH+ GAES HNL YWRYGDY GIGPGAH R+ G ++A + E+ PE+WL MV + Sbjct: 256 YEVSNHARPGAESRHNLTYWRYGDYAGIGPGAHGRLTRGPEKLATATERKPETWLDMVER 315 Query: 311 NGHAVVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLDIECERNLQRQGFIER 370 +GH ++++E L E+Q+DE L+MGLRLREG+ + W+ L+GR+LD + E L FIER Sbjct: 316 DGHGILDEERLGFEEQSDELLLMGLRLREGVDLARWQQLSGRDLDPKREEFLLEHKFIER 375 Query: 371 VQFSRLRCTQRGMTMLDSVIANLAV 395 + SRLRCT GM +LDSV+A+LA Sbjct: 376 IGNSRLRCTPSGMLILDSVVADLAC 400 |
Species: Rhizobium leguminosarum Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|150395235|ref|YP_001325702.1| coproporphyrinogen III oxidase [Sinorhizobium medicae WSM419] Length = 381 | Back alignment and organism information |
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Score = 498 bits (1282), Expect = e-139, Method: Compositional matrix adjust. Identities = 228/376 (60%), Positives = 286/376 (76%) Query: 19 LGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGG 78 GVYVHWPFC KCPYCDFNSHVR V Q F+ +FL EM +R L+GPR+++SIF GG Sbjct: 5 FGVYVHWPFCAAKCPYCDFNSHVRHTPVEQPRFVAAFLKEMAAVRDLSGPRTVTSIFMGG 64 Query: 79 GTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQ 138 GTPSL++PQ + ILDGIA++W V +EIT+EANPSSVE F+GYR AGVNR+SLGVQ Sbjct: 65 GTPSLMDPQTVEAILDGIARHWHVPDGIEITMEANPSSVEATRFRGYRAAGVNRVSLGVQ 124 Query: 139 SLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYA 198 +L ++ L+FLGR HN +A+ AI LAR IFPRMSFDLIYA P QT+ +WE EL+ A+SYA Sbjct: 125 ALNDRDLKFLGRLHNVEDALKAIRLAREIFPRMSFDLIYARPNQTVEEWERELKEAVSYA 184 Query: 199 VDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEISNHSF 258 VDHLSLYQLTIE+GT FY +HK G L++P + LY TQ IT+ G+ AYE+SNH+ Sbjct: 185 VDHLSLYQLTIEEGTPFYGLHKAGKLIVPDGEQSAVLYEATQEITADIGMPAYEVSNHAR 244 Query: 259 LGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAVVEK 318 GAES HNL YWRYGDY GIGPGAH R++VGS ++A + E++PE+WL+ V ++G +VE+ Sbjct: 245 PGAESRHNLTYWRYGDYAGIGPGAHGRLQVGSGKIATATERNPEAWLQNVEEHGDGMVER 304 Query: 319 EFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLDIECERNLQRQGFIERVQFSRLRC 378 EFL E QADE L+MGLRLREG+ + W+ L+GRN D E L GFIER+ SRLRC Sbjct: 305 EFLDFEAQADELLLMGLRLREGVDLARWQSLSGRNPDPAREEFLIEHGFIERIGNSRLRC 364 Query: 379 TQRGMTMLDSVIANLA 394 T GM +LD+V+A+LA Sbjct: 365 TPSGMLILDAVVADLA 380 |
Species: Sinorhizobium medicae Genus: Sinorhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|222147319|ref|YP_002548276.1| coproporphyrinogen III oxidase [Agrobacterium vitis S4] Length = 393 | Back alignment and organism information |
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Score = 498 bits (1281), Expect = e-139, Method: Compositional matrix adjust. Identities = 222/381 (58%), Positives = 284/381 (74%) Query: 15 GSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSI 74 G G+Y+HWPFC KCPYCDFNSHVR K+ Q F Q+FL EM+ MR ++GP++++SI Sbjct: 13 GEPGFGIYIHWPFCAAKCPYCDFNSHVRHQKIDQPRFTQAFLKEMETMRAMSGPKTVTSI 72 Query: 75 FFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRIS 134 F GGGTPSL++P + IL+GIA+ WTV +EIT+EANP+SVE F+GYR AGVNR+S Sbjct: 73 FLGGGTPSLMDPATVGAILEGIARYWTVPRGIEITMEANPTSVEAERFRGYRSAGVNRVS 132 Query: 135 LGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRA 194 LGVQ+L + L+FLGR H+ +A+ A+ LAR IFPRMSFDLIYA P QT+ W+ EL+ A Sbjct: 133 LGVQALNDADLKFLGRMHSVEDALKAVRLAREIFPRMSFDLIYARPNQTIADWDAELKLA 192 Query: 195 LSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEIS 254 +SYAVDHLSLYQLTIE+GT F+ +HK G ++ P E A LY TQ IT GL AYE+S Sbjct: 193 ISYAVDHLSLYQLTIEEGTPFFGLHKAGKIITPDEEHAAQLYEATQEITEREGLPAYEVS 252 Query: 255 NHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHA 314 NH+ GAES HNL YWRYGDY GIGPGAH R+ G ++A + EKHPE+WL V +NGH Sbjct: 253 NHARPGAESRHNLTYWRYGDYAGIGPGAHGRLTRGHEKLATATEKHPETWLSAVEQNGHG 312 Query: 315 VVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLDIECERNLQRQGFIERVQFS 374 +V ++ L SE+QADE L+MGLRLREG+ + W+ L+GR+ D E+ L GFIER+ S Sbjct: 313 MVIQDALGSEEQADELLLMGLRLREGVDLARWQQLSGRDPDPVREQFLLEHGFIERLGNS 372 Query: 375 RLRCTQRGMTMLDSVIANLAV 395 RLRCT +GM +LD+V+A+LA Sbjct: 373 RLRCTPKGMLVLDAVVADLAC 393 |
Species: Agrobacterium vitis Genus: Agrobacterium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|159184259|ref|NP_353357.2| coproporphyrinogen III oxidase [Agrobacterium tumefaciens str. C58] Length = 399 | Back alignment and organism information |
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Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust. Identities = 223/381 (58%), Positives = 287/381 (75%) Query: 15 GSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSI 74 G G+Y+HWPFC KCPYCDFNSHVR V QE F +FL EM+ MR L+GPR ++SI Sbjct: 19 GDPGFGIYLHWPFCAAKCPYCDFNSHVRHRPVDQERFTAAFLREMEHMRTLSGPRVVTSI 78 Query: 75 FFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRIS 134 F GGGTPSL++PQ + +LDGI++ W V +EIT+EANPSSVE F+GYR AGVNR+S Sbjct: 79 FMGGGTPSLMDPQTVGALLDGISRFWHVPDGIEITMEANPSSVEAERFRGYRAAGVNRVS 138 Query: 135 LGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRA 194 LGVQ+L ++ L+FLGR H+ ++A+ AI LAR IFPRMSFDLIYA P QT+ +W+ EL+ A Sbjct: 139 LGVQALNDRDLKFLGRLHDVADALKAIRLAREIFPRMSFDLIYARPNQTVAEWDAELKEA 198 Query: 195 LSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEIS 254 +SYAVDHLSLYQLTIE+GT FY +HK G L++P + LY TQ IT +G+ AYE+S Sbjct: 199 VSYAVDHLSLYQLTIEEGTPFYGLHKAGKLIVPDGEHSAVLYEATQEITERYGMPAYEVS 258 Query: 255 NHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHA 314 NH+ GAES HNL YWRYGDY GIGPGAH R+ G+ ++A + E+HPE+WL+ V + GH Sbjct: 259 NHARPGAESRHNLTYWRYGDYAGIGPGAHGRLTRGASKLATATERHPETWLETVEREGHG 318 Query: 315 VVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLDIECERNLQRQGFIERVQFS 374 +V++E L ++QADE L+MGLRLREGI + W L+GR+LD E E L + GF+ER+ S Sbjct: 319 MVDQELLGVDEQADELLLMGLRLREGIDLARWSDLSGRDLDPEKEEFLLQHGFVERLGNS 378 Query: 375 RLRCTQRGMTMLDSVIANLAV 395 RLRCT GM +LD+V+A+LA Sbjct: 379 RLRCTPSGMLILDAVVADLAC 399 |
Species: Agrobacterium tumefaciens Genus: Agrobacterium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|222084654|ref|YP_002543183.1| coproporphyrinogen III oxidase protein [Agrobacterium radiobacter K84] Length = 392 | Back alignment and organism information |
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Score = 496 bits (1278), Expect = e-138, Method: Compositional matrix adjust. Identities = 222/380 (58%), Positives = 285/380 (75%) Query: 15 GSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSI 74 G GVYVHWPFC KCPYCDFNSHVR V QE F +FL EM MR + GP++++SI Sbjct: 12 GEPGFGVYVHWPFCAAKCPYCDFNSHVRHQPVDQERFTAAFLKEMASMRAIGGPKTVTSI 71 Query: 75 FFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRIS 134 F GGGTPSL++P+ + +LDGIAK+W V +EIT+EANPSSVE F+GYR AGVNR+S Sbjct: 72 FLGGGTPSLMKPETVGAVLDGIAKHWHVPDGIEITMEANPSSVEAERFRGYRAAGVNRVS 131 Query: 135 LGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRA 194 +GVQ+L ++ L+FLGR HN ++A+ AI LAR+IFPRMSFDLIYA P QT+ +WE EL+ A Sbjct: 132 MGVQALNDRDLKFLGRLHNVADALKAIKLARDIFPRMSFDLIYARPNQTVEEWERELKEA 191 Query: 195 LSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEIS 254 +SYAVDHLSLYQLTIE+GT FY +HK G L++P + + LY TQ IT G+ AYE+S Sbjct: 192 ISYAVDHLSLYQLTIEEGTPFYGLHKAGKLIVPDGDQSALLYEATQEITEREGMPAYEVS 251 Query: 255 NHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHA 314 NH+ GAES HNL YWRYGDY GIGPGAH R+ +G ++A + E+ PE+WL++V ++GH Sbjct: 252 NHARPGAESRHNLTYWRYGDYAGIGPGAHGRLTLGPKKLATATERKPEAWLELVERDGHG 311 Query: 315 VVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLDIECERNLQRQGFIERVQFS 374 + ++E L ++QADE L+MGLRL+EGI + W+ L+GR D E L GFIER+ S Sbjct: 312 IADQEMLGDDEQADELLLMGLRLKEGIDLVRWQQLSGREPDQAREEFLLEHGFIERLGNS 371 Query: 375 RLRCTQRGMTMLDSVIANLA 394 RLRCT GM +LDSV+A+LA Sbjct: 372 RLRCTPAGMLILDSVVADLA 391 |
Species: Agrobacterium tumefaciens Genus: Agrobacterium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|325291759|ref|YP_004277623.1| oxygen-independent coproporphyrinogen III oxidase [Agrobacterium sp. H13-3] Length = 399 | Back alignment and organism information |
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Score = 496 bits (1277), Expect = e-138, Method: Compositional matrix adjust. Identities = 222/380 (58%), Positives = 285/380 (75%) Query: 15 GSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSI 74 G G+Y+HWPFC KCPYCDFNSHVR V QE F +FL+EM MR L+GPR ++SI Sbjct: 19 GDPGFGIYLHWPFCAAKCPYCDFNSHVRHRPVDQERFTAAFLSEMAKMRALSGPRVVTSI 78 Query: 75 FFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRIS 134 F GGGTPSL++PQ + +LDG+++ W V +EIT+EANPSSVE F+GYR AGVNR+S Sbjct: 79 FMGGGTPSLMDPQTVGALLDGVSRFWHVPDGIEITMEANPSSVEAERFRGYRAAGVNRVS 138 Query: 135 LGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRA 194 LGVQ+L ++ L+FLGR H+ ++A+ AI LAR IFPRMSFDLIYA P QT+ +W+ EL+ A Sbjct: 139 LGVQALNDRDLKFLGRLHDVADALKAIRLAREIFPRMSFDLIYARPNQTVAEWDAELKEA 198 Query: 195 LSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEIS 254 +SYAVDHLSLYQLTIE+GT FY +HK G L++P + LY TQ IT +G+ AYE+S Sbjct: 199 VSYAVDHLSLYQLTIEEGTPFYGLHKAGKLIVPDGEHSAVLYEATQEITERYGMPAYEVS 258 Query: 255 NHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHA 314 NH+ GAES HNL YWRYGDY GIGPGAH R+ G+ ++A E+HPE+WL+ V + GH Sbjct: 259 NHARPGAESRHNLTYWRYGDYAGIGPGAHGRLTNGASKLATVTERHPETWLETVEREGHG 318 Query: 315 VVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLDIECERNLQRQGFIERVQFS 374 +V++E L ++QADE L+MGLRLREGI + W L+GR LD E E L + GF+ER+ S Sbjct: 319 MVDQELLGVDEQADELLLMGLRLREGIDLARWSDLSGRELDPEKEEFLLQHGFVERIGNS 378 Query: 375 RLRCTQRGMTMLDSVIANLA 394 RLRCT GM +LD+V+A+LA Sbjct: 379 RLRCTPSGMLILDAVVADLA 398 |
Species: Agrobacterium sp. H13-3 Genus: Agrobacterium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|190890029|ref|YP_001976571.1| oxygen-independent coprophorphyrinogen III oxidase [Rhizobium etli CIAT 652] Length = 400 | Back alignment and organism information |
---|
Score = 495 bits (1274), Expect = e-138, Method: Compositional matrix adjust. Identities = 222/385 (57%), Positives = 287/385 (74%) Query: 11 MTGQGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRS 70 + G GVYVHWPFC KCPYCDFNSHVR V QE F +FL E +R ++GP++ Sbjct: 16 LPDTGEPGFGVYVHWPFCAAKCPYCDFNSHVRHQPVDQERFAAAFLKETAAVRAMSGPKT 75 Query: 71 ISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGV 130 ++SIF GGGTPSL++P+ +A ILDGIA++W V +EIT+EANPSSVE F+GYR AGV Sbjct: 76 VTSIFLGGGTPSLMKPETVAAILDGIARHWHVPDGIEITMEANPSSVEAERFRGYRAAGV 135 Query: 131 NRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEME 190 NR+SLGVQ+L ++ L+FLGR H+ ++A+ AI LAR IFPRMSFDLIYA P QT+ +WE E Sbjct: 136 NRVSLGVQALNDRDLKFLGRLHDVADALKAIRLAREIFPRMSFDLIYARPDQTVEEWESE 195 Query: 191 LQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHA 250 L++A+SYAVDHLSLYQLTIE+GT FY +HK G L++P + LY TQ IT+ G+ A Sbjct: 196 LKQAISYAVDHLSLYQLTIEEGTPFYGLHKAGKLIVPDGEQSAVLYEATQEITAREGMPA 255 Query: 251 YEISNHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRK 310 YE+SNH+ GAES HNL YWRYGDY GIGPGAH R+ G ++A + E+ PE+WL MV + Sbjct: 256 YEVSNHARPGAESRHNLTYWRYGDYAGIGPGAHGRLTRGREKIATATERKPEAWLDMVER 315 Query: 311 NGHAVVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLDIECERNLQRQGFIER 370 +GH ++++E L E+Q+DE L+MGLRLREG+ + W+ L+GR LD + E L FIER Sbjct: 316 DGHGILDEERLGHEEQSDELLLMGLRLREGVDLARWQQLSGRELDPKREEFLLEHKFIER 375 Query: 371 VQFSRLRCTQRGMTMLDSVIANLAV 395 + SRLRCT GM +LDSV+A+LA Sbjct: 376 IGNSRLRCTPSGMLILDSVVADLAC 400 |
Species: Rhizobium etli Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 395 | coproporphyrinogen III oxidase [Candidatus Liberibacter | ||
PRK09057 | 380 | PRK09057, PRK09057, coproporphyrinogen III oxidase; Pro | 1e-177 | |
PRK06582 | 390 | PRK06582, PRK06582, coproporphyrinogen III oxidase; Pro | 1e-106 | |
PRK05660 | 378 | PRK05660, PRK05660, HemN family oxidoreductase; Provisi | 3e-85 | |
PRK08898 | 394 | PRK08898, PRK08898, coproporphyrinogen III oxidase; Pro | 1e-84 | |
PRK08599 | 377 | PRK08599, PRK08599, coproporphyrinogen III oxidase; Pro | 1e-80 | |
TIGR00539 | 360 | TIGR00539, hemN_rel, putative oxygen-independent coprop | 3e-75 | |
PRK05628 | 375 | PRK05628, PRK05628, coproporphyrinogen III oxidase; Val | 2e-73 | |
PRK05799 | 374 | PRK05799, PRK05799, coproporphyrinogen III oxidase; Pro | 7e-73 | |
PRK07379 | 400 | PRK07379, PRK07379, coproporphyrinogen III oxidase; Pro | 6e-64 | |
PRK08208 | 430 | PRK08208, PRK08208, coproporphyrinogen III oxidase; Val | 6e-30 | |
COG0635 | 416 | COG0635, HemN, Coproporphyrinogen III oxidase and relat | 5e-99 | |
PRK06294 | 370 | PRK06294, PRK06294, coproporphyrinogen III oxidase; Pro | 1e-58 | |
PRK08446 | 350 | PRK08446, PRK08446, coproporphyrinogen III oxidase; Pro | 6e-58 | |
PRK05904 | 353 | PRK05904, PRK05904, coproporphyrinogen III oxidase; Pro | 8e-37 | |
smart00729 | 216 | smart00729, Elp3, Elongator protein 3, MiaB family, Rad | 7e-41 | |
PRK08207 | 488 | PRK08207, PRK08207, coproporphyrinogen III oxidase; Pro | 4e-31 | |
PRK09058 | 449 | PRK09058, PRK09058, coproporphyrinogen III oxidase; Pro | 3e-27 | |
TIGR00538 | 455 | TIGR00538, hemN, oxygen-independent coproporphyrinogen | 7e-27 | |
COG1243 | 515 | COG1243, ELP3, Histone acetyltransferase [Transcription | 4e-11 | |
cd01335 | 204 | cd01335, Radical_SAM, Radical SAM superfamily | 2e-06 | |
PRK09249 | 453 | PRK09249, PRK09249, coproporphyrinogen III oxidase; Pro | 5e-27 | |
PRK13347 | 453 | PRK13347, PRK13347, coproporphyrinogen III oxidase; Pro | 6e-24 | |
pfam04055 | 165 | pfam04055, Radical_SAM, Radical SAM superfamily | 8e-17 | |
pfam06969 | 118 | pfam06969, HemN_C, HemN C-terminal region | 5e-26 | |
PRK08629 | 433 | PRK08629, PRK08629, coproporphyrinogen III oxidase; Pro | 7e-20 | |
TIGR01211 | 522 | TIGR01211, ELP3, histone acetyltransferase, ELP3 family | 4e-07 | |
KOG2535 | 554 | KOG2535, KOG2535, KOG2535, RNA polymerase II elongator | 1e-04 | |
COG1242 | 312 | COG1242, COG1242, Predicted Fe-S oxidoreductase [Genera | 1e-06 | |
TIGR01212 | 302 | TIGR01212, TIGR01212, radical SAM protein, TIGR01212 fa | 1e-06 |
>gnl|CDD|181629 PRK09057, PRK09057, coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
---|
Score = 614 bits (1587), Expect = e-177 Identities = 225/376 (59%), Positives = 282/376 (75%), Gaps = 1/376 (0%) Query: 19 LGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGG 78 G+YVHWPFC+ KCPYCDFNSHVR + Q F +FL E+ TGPR+++SIFFGG Sbjct: 5 FGLYVHWPFCLAKCPYCDFNSHVRH-AIDQARFAAAFLRELATEAARTGPRTLTSIFFGG 63 Query: 79 GTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQ 138 GTPSL++P+ +A +LD IA+ W V+ ++EIT+EANP+SVE F+GYR AGVNR+SLGVQ Sbjct: 64 GTPSLMQPETVAALLDAIARLWPVADDIEITLEANPTSVEAGRFRGYRAAGVNRVSLGVQ 123 Query: 139 SLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYA 198 +L + LRFLGR H+ +EA+AAI LAR IFPR+SFDLIYA P QT+ W EL+ ALS A Sbjct: 124 ALNDADLRFLGRLHSVAEALAAIDLAREIFPRVSFDLIYARPGQTLAAWRAELKEALSLA 183 Query: 199 VDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEISNHSF 258 DHLSLYQLTIE+GT FY +H G L+LP E++A DLY LTQ IT+A GL AYEISNH+ Sbjct: 184 ADHLSLYQLTIEEGTAFYGLHAAGKLILPDEDLAADLYELTQEITAAAGLPAYEISNHAR 243 Query: 259 LGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAVVEK 318 GAES HNL YWRYGDY GIGPGAH R+ +G R A + EK PE+WL+ V +NGH ++E+ Sbjct: 244 PGAESRHNLTYWRYGDYAGIGPGAHGRLTLGGERHATATEKAPEAWLERVERNGHGIIEE 303 Query: 319 EFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLDIECERNLQRQGFIERVQFSRLRC 378 E L E++ADEFL+MGLRLREGI + + L+GR LD E +L +G IER SRLR Sbjct: 304 ERLDPEERADEFLLMGLRLREGIDLARYAALSGRPLDPERLADLIEEGLIERDGGSRLRA 363 Query: 379 TQRGMTMLDSVIANLA 394 T G +LD+V+A+LA Sbjct: 364 TPAGRLVLDAVVADLA 379 |
Length = 380 |
>gnl|CDD|180630 PRK06582, PRK06582, coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
---|
Score = 382 bits (982), Expect = e-106 Identities = 162/382 (42%), Positives = 232/382 (60%), Gaps = 9/382 (2%) Query: 16 SNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIF 75 +N L +Y+HWPFC+ KCPYCDFNSHV + +++S+ E+++ + + + I SIF Sbjct: 9 ANDLSIYIHWPFCLSKCPYCDFNSHVAS-TIDHNQWLKSYEKEIEYFKDIIQNKYIKSIF 67 Query: 76 FGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISL 135 FGGGTPSL+ P + I++ I+ + + EIT+E NP+S E F+ ++ AG+NR+S+ Sbjct: 68 FGGGTPSLMNPVIVEGIINKISNLAIIDNQTEITLETNPTSFETEKFKAFKLAGINRVSI 127 Query: 136 GVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRAL 195 GVQSL+E L+ LGR H+ +AI I A IFPR+SFDLIYA QT+ W+ EL++A+ Sbjct: 128 GVQSLKEDDLKKLGRTHDCMQAIKTIEAANTIFPRVSFDLIYARSGQTLKDWQEELKQAM 187 Query: 196 SYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEISN 255 A H+SLYQLTIEKGT FYK+ K+G+L+LP + A ++Y T + YEISN Sbjct: 188 QLATSHISLYQLTIEKGTPFYKLFKEGNLILPHSDAAAEMYEWTNHYLESKKYFRYEISN 247 Query: 256 HSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRV-AISIEKHPESWLKMVRKNGHA 314 ++ +G E LHNL YW Y Y+GIGPGAHSR+ S V AI + PE WL V+ Sbjct: 248 YAKIGQECLHNLTYWNYNSYLGIGPGAHSRIIESSSSVSAIMMWHKPEKWLDAVKTKNVG 307 Query: 315 VVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRN----LDIECERNLQRQGFIER 370 + L+ ++ +E LMMGLRL +GI++ E LD+ ++ Q I Sbjct: 308 IQTNTKLTHQEIIEEILMMGLRLSKGINISTLEQKLNTKLENILDMNNLKHYQALDLIRL 367 Query: 371 VQFSRLRCTQRGMTMLDSVIAN 392 + L T +G+ ML S I Sbjct: 368 DENIYL--TDKGL-MLHSYIVP 386 |
Length = 390 |
>gnl|CDD|180187 PRK05660, PRK05660, HemN family oxidoreductase; Provisional | Back alignment and domain information |
---|
Score = 310 bits (797), Expect = 3e-85 Identities = 136/385 (35%), Positives = 208/385 (54%), Gaps = 30/385 (7%) Query: 19 LGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGG 78 L +Y+H P+CV+KCPYCDFNSH + +V ++ ++ L ++ L R + SIF GG Sbjct: 7 LSLYIHIPWCVQKCPYCDFNSHALKGEVPEDEYVDHLLADLDADLPLVQGREVHSIFIGG 66 Query: 79 GTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQ 138 GTPSL + I +LDG+ + + EIT+EANP +VE + F GY++AGVNRIS+GVQ Sbjct: 67 GTPSLFSAEAIQRLLDGVRARLPFAPDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQ 126 Query: 139 SLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSF--DLIYALPKQTMTQWEMELQRALS 196 S E+ L+ LGR H EA A LA+ + R SF DL++ LP Q++ + +L++A++ Sbjct: 127 SFSEEKLKRLGRIHGPDEAKRAAKLAQGLGLR-SFNLDLMHGLPDQSLEEALDDLRQAIA 185 Query: 197 YAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEISNH 256 HLS YQLTIE TLF VLP ++ D++ + +A G YE S + Sbjct: 186 LNPPHLSWYQLTIEPNTLFGSRPP----VLPDDDALWDIFEQGHQLLTAAGYQQYETSAY 241 Query: 257 SFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIE-KHPESWLKMVRKNGHAV 315 + G + HNLNYWR+GDY+GIG GAH ++ R+ + + KHP ++ Sbjct: 242 AKPGYQCQHNLNYWRFGDYLGIGCGAHGKLTFPDGRILRTWKTKHPRGYM---------- 291 Query: 316 VEKEFLSSEQQAD------EFLMMGLRLREGISVKDWEMLAGRNLDI---ECERNLQRQG 366 + +L ++ + EF M RL E D+E G + + + L QG Sbjct: 292 -QGRYLDGQRDVEAADRPFEFFMNRFRLLEAAPRADFEAYTGLPESVIRPQLDEALA-QG 349 Query: 367 FIERVQFSRLRCTQRGMTMLDSVIA 391 ++ + T+ G L+ ++ Sbjct: 350 YL-TETADHWQITEHGKLFLNDLLE 373 |
Length = 378 |
>gnl|CDD|181577 PRK08898, PRK08898, coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
---|
Score = 309 bits (793), Expect = 1e-84 Identities = 131/371 (35%), Positives = 210/371 (56%), Gaps = 16/371 (4%) Query: 19 LGVYVHWPFCVKKCPYCDFNSHVRRYKVG--QENFIQSFLTEMQWMRQLTGPRSISSIFF 76 L +YVH+P+CV+KCPYCDFNSH + + ++ + +++ L R + ++F Sbjct: 20 LSLYVHFPWCVRKCPYCDFNSHEWKDGGAIPEAAYLDALRADLEQALPLVWGRQVHTVFI 79 Query: 77 GGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLG 136 GGGTPSL+ + +L + + + EIT+EANP + E F +R +GVNR+S+G Sbjct: 80 GGGTPSLLSAAGLDRLLSDVRALLPLDPDAEITLEANPGTFEAEKFAQFRASGVNRLSIG 139 Query: 137 VQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRALS 196 +QS + L+ LGR H+ +EA AAI +A F + DL+YALP QT+ + +++ AL+ Sbjct: 140 IQSFNDAHLKALGRIHDGAEARAAIEIAAKHFDNFNLDLMYALPGQTLDEALADVETALA 199 Query: 197 YAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEISNH 256 + HLSLY LT+E TLF K LP ++ + D+ + ++ +A G YE+S + Sbjct: 200 FGPPHLSLYHLTLEPNTLFAKFPP----ALPDDDASADMQDWIEARLAAAGYAHYEVSAY 255 Query: 257 SFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSH-RVAISIE-KHPESWLKMVRKNGHA 314 + G + HNLNYW++GDY+GIG GAH K+ R+ + KHP ++L+ + G A Sbjct: 256 AKPGRQCRHNLNYWQFGDYLGIGAGAHG--KLSFPDRILRQMRYKHPATYLEQAKA-GTA 312 Query: 315 VVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLDIECERNLQ---RQGFIERV 371 V E+ + + EF++ LRL +G+ ++ G L E L ++G +ER Sbjct: 313 VQEEREVGARDLPFEFMLNALRLTDGVPAHLFQERTGLPL-AAIEPQLAAAEQRGLLER- 370 Query: 372 QFSRLRCTQRG 382 +R+R T G Sbjct: 371 DHTRIRPTPLG 381 |
Length = 394 |
>gnl|CDD|181496 PRK08599, PRK08599, coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
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Score = 295 bits (757), Expect = 1e-80 Identities = 130/379 (34%), Positives = 198/379 (52%), Gaps = 21/379 (5%) Query: 20 GVYVHWPFCVKKCPYCDFNSHVRRYKVGQEN-----FIQSFLTEMQWMRQLTGPRSISSI 74 Y+H PFC C YCDFN KV +N ++ + + EM + + +I Sbjct: 3 SAYIHIPFCEHICYYCDFN------KVFIKNQPVDEYLDALIKEMNTY-AIRPFDKLKTI 55 Query: 75 FFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRIS 134 + GGGTP+ + + + +L I +N +S E T EANP + Q + +GVNRIS Sbjct: 56 YIGGGTPTALSAEQLERLLTAIHRNLPLSGLEEFTFEANPGDLTKEKLQVLKDSGVNRIS 115 Query: 135 LGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI-FPRMSFDLIYALPKQTMTQWEMELQR 193 LGVQ+ ++ L+ +GR HN + AI A+ F +S DLIYALP QT+ ++ L + Sbjct: 116 LGVQTFNDELLKKIGRTHNEEDVYEAIANAKKAGFDNISIDLIYALPGQTIEDFKESLAK 175 Query: 194 ALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEI 253 AL+ + H S Y L +E T+FY + + G L LP E++ ++Y AHG H YEI Sbjct: 176 ALALDIPHYSAYSLILEPKTVFYNLMRKGKLRLPGEDLEAEMYEYLMDEMEAHGFHQYEI 235 Query: 254 SNHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGH 313 SN + G ES HNL YW +Y G G GA V G I KH +LK + + G Sbjct: 236 SNFAKPGFESRHNLTYWNNEEYYGFGAGASGYVN-GVRYQNIGPIKH---YLKAINEEGL 291 Query: 314 AVVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLDI---ECERNLQRQGFIER 370 +E+ L+ ++Q +E + +GLR + G+S +E G++ + E + LQ QG +E Sbjct: 292 PRLEEHVLTKKEQMEEEMFLGLRKKSGVSKARFEEKFGQSFEDVFGETIQELQEQGLLEE 351 Query: 371 VQFSRLRCTQRGMTMLDSV 389 +R T++G + + V Sbjct: 352 DD-DHVRLTKKGKFLGNEV 369 |
Length = 377 |
>gnl|CDD|129630 TIGR00539, hemN_rel, putative oxygen-independent coproporphyrinogen III oxidase | Back alignment and domain information |
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Score = 277 bits (711), Expect = 3e-75 Identities = 110/359 (30%), Positives = 177/359 (49%), Gaps = 13/359 (3%) Query: 19 LGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGG 78 + +Y+H PFC KC YCDFNS+ + +E + Q+ +++ T + SIF GG Sbjct: 1 MSLYIHIPFCENKCGYCDFNSYENKSGPKEE-YTQALCQDLKHALSQTDQEPLESIFIGG 59 Query: 79 GTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQ 138 GTP+ + + + + I ++ ++S + EIT EANP + +G + AG+NR+SLGVQ Sbjct: 60 GTPNTLSVEAFERLFESIYQHASLSDDCEITTEANPELITAEWCKGLKGAGINRLSLGVQ 119 Query: 139 SLEEQSLRFLGRNHNASEAIAAIHLARNI-FPRMSFDLIYALPKQTMTQWEMELQRALSY 197 S + L FLGR H+A AI A +S DL+Y LP QT+ + EL+ A Sbjct: 120 SFRDDKLLFLGRQHSAKNIAPAIETALKSGIENISLDLMYGLPLQTLNSLKEELKLAKEL 179 Query: 198 AVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEISNHS 257 ++HLS Y L++E T F K K LP ++ + + I G YE+SN++ Sbjct: 180 PINHLSAYALSVEPNTNFEKNAKK----LPDDDSCAHFDEVVREILEGFGFKQYEVSNYA 235 Query: 258 FLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAVVE 317 G + HNL YW DY+G G GAH V + R K ++++K + G + Sbjct: 236 KAGYQVKHNLAYWGAKDYLGCGAGAHG--CVANERFFAK--KLIKNYIKDPLQRGVETLN 291 Query: 318 KEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLD---IECERNLQRQGFIERVQF 373 ++ + + + E L +GLR G+ ++ G + IE + + + Sbjct: 292 EKNVPKQDKRLEKLFLGLRCVLGVEKSFFDENKGLSQVKFLIEENKAFIKNNRLINSDS 350 |
Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo. Length = 360 |
>gnl|CDD|180172 PRK05628, PRK05628, coproporphyrinogen III oxidase; Validated | Back alignment and domain information |
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Score = 271 bits (696), Expect = 2e-73 Identities = 137/385 (35%), Positives = 195/385 (50%), Gaps = 24/385 (6%) Query: 19 LGVYVHWPFCVKKCPYCDFNSHVR---RYKVGQENFIQSFLTEMQWMRQLTG--PRSISS 73 GVYVH PFC +C YCDFN++ + ++ + E++ + G +S+ Sbjct: 3 FGVYVHVPFCATRCGYCDFNTYTAAELGGGASPDGYLDALRAELELAAAVLGDPAPPVST 62 Query: 74 IFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRI 133 +F GGGTPSL+ + +A +LD + + ++ E+T EANP S F R AG R+ Sbjct: 63 VFVGGGTPSLLGAEGLARVLDAVRDTFGLAPGAEVTTEANPESTSPEFFAALRAAGFTRV 122 Query: 134 SLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI-FPRMSFDLIYALPKQTMTQWEMELQ 192 SLG+QS L L R H A+AA AR F ++ DLIY P ++ W L Sbjct: 123 SLGMQSAAPHVLAVLDRTHTPGRAVAAAREARAAGFEHVNLDLIYGTPGESDDDWRASLD 182 Query: 193 RALSYAVDHLSLYQLTIEKGT-LFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAY 251 AL VDH+S Y L +E GT L ++ + G+L P ++V D Y L + SA G Y Sbjct: 183 AALEAGVDHVSAYALIVEDGTALARRVRR-GELPAPDDDVLADRYELADARLSAAGFDWY 241 Query: 252 EISNHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHR---VAISIEKHPESWLKMV 308 E+SN + G E HNL YWR GD+ G GPGAHS VG R V KHP ++ + Sbjct: 242 EVSNWARPGGECRHNLGYWRGGDWWGAGPGAHSH--VGGVRWWNV-----KHPAAYAARL 294 Query: 309 RKNGHAVVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLDIECERNLQRQGFI 368 V +E L +E + E +M+GLRLREG+ + + A R R + G + Sbjct: 295 AAGALPVAGREVLDAEDRHVERVMLGLRLREGLPLALLDA-AERA---RAAR-VVADGLL 349 Query: 369 ERVQFSRLRCTQRGMTMLDSVIANL 393 RL T RG + D+V+ +L Sbjct: 350 AAEG-GRLVLTLRGRLLADAVVRDL 373 |
Length = 375 |
>gnl|CDD|180263 PRK05799, PRK05799, coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
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Score = 269 bits (691), Expect = 7e-73 Identities = 123/379 (32%), Positives = 205/379 (54%), Gaps = 18/379 (4%) Query: 17 NSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFF 76 + +Y+H PFC +KC YCDF S+ + + +I++ E+ R T + I SIF Sbjct: 2 KEISLYIHIPFCKQKCLYCDFPSYSGKEDL-MMEYIKALSKEI---RNSTKNKKIKSIFI 57 Query: 77 GGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLG 136 GGGTP+ + + + IL K ++E T+E NP + + + GVNR+S+G Sbjct: 58 GGGTPTYLSLEALE-ILKETIKKLNKKEDLEFTVEGNPGTFTEEKLKILKSMGVNRLSIG 116 Query: 137 VQSLEEQSLRFLGRNHNASEAIAAIHLARNI-FPRMSFDLIYALPKQTMTQWEMELQRAL 195 +Q+ + L++LGR H E + LAR + F ++ DL++ LP QT+ W+ L++ + Sbjct: 117 LQAWQNSLLKYLGRIHTFEEFLENYKLARKLGFNNINVDLMFGLPNQTLEDWKETLEKVV 176 Query: 196 SYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEISN 255 +H+S Y L IE+GT FY ++++G L LP E ++Y+ T G H YEISN Sbjct: 177 ELNPEHISCYSLIIEEGTPFYNLYENGKLKLPDEEEEREMYHYTIEFLKEKGYHQYEISN 236 Query: 256 HSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAV 315 + G E HNL YW +YIG G GAHS V + +IEK ++K + +N AV Sbjct: 237 FAKPGKECRHNLVYWDLEEYIGCGAGAHSYVNGKRYENISNIEK----YIKEINENNSAV 292 Query: 316 VEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNL-----DIECERNLQRQGFIER 370 E S + +EF+ MGLR +GI ++D++ G+N+ ++ + + + G + Sbjct: 293 EEIHKNSIKDNMEEFMFMGLRKIKGICIEDFKKRFGKNIYEVYGEV-INKYI-KLGLLIE 350 Query: 371 VQFSRLRCTQRGMTMLDSV 389 + R+ ++RG+ + +S+ Sbjct: 351 -KEGRIYLSERGIEVSNSI 368 |
Length = 374 |
>gnl|CDD|180953 PRK07379, PRK07379, coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
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Score = 240 bits (614), Expect = 6e-64 Identities = 127/388 (32%), Positives = 203/388 (52%), Gaps = 23/388 (5%) Query: 21 VYVHWPFCVKKCPYCDFNSHV--RRYKVGQENFIQSFLTEMQWMRQ-----LTGPRSISS 73 Y+H PFC ++C YCDF V R + G I+ ++ + + Q + + + + Sbjct: 13 AYIHIPFCRRRCFYCDFPISVVGDRTRGGTSGLIEEYV---EVLCQEIAITPSFGQPLQT 69 Query: 74 IFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRI 133 +FFGGGTPSL+ + + IL + + + ++ + EI++E +P + ++ QGYR GVNR+ Sbjct: 70 VFFGGGTPSLLSVEQLERILTTLDQRFGIAPDAEISLEIDPGTFDLEQLQGYRSLGVNRV 129 Query: 134 SLGVQSLEEQSLRFLGRNHNASEAIAAI-HLARNIFPRMSFDLIYALPKQTMTQWEMELQ 192 SLGVQ+ +++ L GR+H + AA+ + + S DLI LP QT+ W+ L+ Sbjct: 130 SLGVQAFQDELLALCGRSHRVKDIFAAVDLIHQAGIENFSLDLISGLPHQTLEDWQASLE 189 Query: 193 RALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYE 252 A++ HLS Y L +E GT F K ++ G LPS+ +Y L Q I + G YE Sbjct: 190 AAIALNPTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQAGYEHYE 249 Query: 253 ISNHSFLGAESLHNLNYWRYGDYIGIGPGAHSRV---KVGSHRVAISIEKHPESWLKMVR 309 ISN++ G + HN YW Y G G GA S V + R K W++ + Sbjct: 250 ISNYAKPGYQCRHNRVYWENRPYYGFGMGAASYVNGQRFTRPRT----RKEYYQWVEALI 305 Query: 310 KNGHAVVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLD---IECERNLQRQG 366 NG +++ E S E + E LM+GLRL EG+S+ G+ + ++C + +QG Sbjct: 306 ANG-GLIDGEPSSPEDELLETLMLGLRLAEGVSLSALTERFGKEIVEQILQCLQPYFQQG 364 Query: 367 FIERVQFSRLRCTQ-RGMTMLDSVIANL 393 ++E RLR T G ++V+A+L Sbjct: 365 WVELEGDRRLRLTDPEGFLFSNTVLASL 392 |
Length = 400 |
>gnl|CDD|181292 PRK08208, PRK08208, coproporphyrinogen III oxidase; Validated | Back alignment and domain information |
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Score = 127 bits (320), Expect = 6e-30 Identities = 94/404 (23%), Positives = 164/404 (40%), Gaps = 53/404 (13%) Query: 13 GQGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFL----TEMQWMRQLTGP 68 + ++L +Y+H PFC +C +C+ + FI S+L + + + + P Sbjct: 34 REYEDALSLYIHIPFCEMRCGFCNLFT----RTGADAEFIDSYLDALIRQAEQVAEALAP 89 Query: 69 RSISSIFFGGGTPSLIEPQNIALILDGIAKNWTV-SSNVEITIEANPSSVEVNNFQGYRK 127 +S GGGTP+L+ + + D + + V N+ ++E +P++ Sbjct: 90 ARFASFAVGGGTPTLLNAAELEKLFDSVERVLGVDLGNIPKSVETSPATTTAEKLALLAA 149 Query: 128 AGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI-FPRMSFDLIYALPKQTMTQ 186 GVNR+S+GVQS + L L R ++ A+ R FP ++ DLIY +P QT Sbjct: 150 RGVNRLSIGVQSFHDSELHALHRPQKRADVHQALEWIRAAGFPILNIDLIYGIPGQTHAS 209 Query: 187 WEMELQRALSYAVDHLSLYQLTIEKGT-LFYKMHKDGDLVLPSENVAVDLYNLTQSITSA 245 W L +AL Y + L LY L + T L + D L LY L + + Sbjct: 210 WMESLDQALVYRPEELFLYPLYVRPLTGLGRRARAWDDQRL-------SLYRLARDLLLE 262 Query: 246 HGLHAYE-ISNHSFLGAESLHNLNYWRYGDY-------IGIGPGAHS---------RVKV 288 G Y S F ++ Y +G+G GA S V Sbjct: 263 AG---YTQTSMRMFRRNDA----PDKGAPAYSCQTDGMLGLGCGARSYTGNLHYSSPYAV 315 Query: 289 GSHRVAISIEKHPESWLKMVRKNGHAVVEKEF-LSSEQQADEFLMMGLRLREGISVKDWE 347 + I+ + + V E + LS ++ F++ L +G+ + D+ Sbjct: 316 NQQTIRSIIDDY-------IATPDFTVAEHGYLLSEDEMKRRFIIKSLLQAQGLDLADYR 368 Query: 348 MLAGRNLDIECE--RNLQRQGFIERVQFSRLRCTQRGMTMLDSV 389 G + + L +G++E+ RLR T+ G+ + D++ Sbjct: 369 QRFGSDPLRDFPELELLIDRGWLEQ-NGGRLRLTEEGLALSDAI 411 |
Length = 430 |
>gnl|CDD|30980 COG0635, HemN, Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism] | Back alignment and domain information |
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Score = 356 bits (915), Expect = 5e-99 Identities = 149/383 (38%), Positives = 216/383 (56%), Gaps = 12/383 (3%) Query: 17 NSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGP-RSISSIF 75 L +Y+H PFCV KCPYCDFNSHV + + ++ + L E++ + L G R + +I+ Sbjct: 33 KPLSLYIHIPFCVSKCPYCDFNSHVTKRGQPVDEYLDALLEEIELVAALLGGQREVKTIY 92 Query: 76 FGGGTPSLIEPQNIALILDGIAKNWT-VSSNVEITIEANPSSVEVNNFQGYRKAGVNRIS 134 FGGGTPSL+ P+ + +L + + + + + EITIEANP +VE F+ ++AGVNRIS Sbjct: 93 FGGGTPSLLSPEQLERLLKALRELFNDLDPDAEITIEANPGTVEAEKFKALKEAGVNRIS 152 Query: 135 LGVQSLEEQSLRFLGRNHNASEAIAAIHLARN-IFPRMSFDLIYALPKQTMTQWEMELQR 193 LGVQS ++ L+ LGR H+ EA A+ LAR F ++ DLIY LP QT+ + +L++ Sbjct: 153 LGVQSFNDEVLKALGRIHDEEEAKEAVELARKAGFTSINIDLIYGLPGQTLESLKEDLEQ 212 Query: 194 ALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEI 253 AL DHLSLY L IE GT F + G LP E+ D+Y L + + G YEI Sbjct: 213 ALELGPDHLSLYSLAIEPGTKFAQRKIKGK-ALPDEDEKADMYELVEELLEKAGYRQYEI 271 Query: 254 SNHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGH 313 SN + G E HNL YW DY+GIG GAH R+ +K+ +++L+ V + G Sbjct: 272 SNFAKPGGECRHNLQYWETKDYLGIGAGAHGRI----GGTRYQNKKNLKTYLEAVDEGGL 327 Query: 314 AVVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRN---LDIECERNLQRQGFIER 370 +VE E L+ + E L++GLRL G+ + + E G +E L G +E Sbjct: 328 PLVEGEELTPDDLIREALILGLRLNFGVDLAELEERFGIFKFAEILELLAELIADGLLEL 387 Query: 371 VQFSRLRCTQRGMTMLDSVIANL 393 RLR T++G +L S+ Sbjct: 388 DG-DRLRLTEKGRLLLRSIAEAF 409 |
Length = 416 |
>gnl|CDD|180518 PRK06294, PRK06294, coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
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Score = 222 bits (567), Expect = 1e-58 Identities = 111/337 (32%), Positives = 180/337 (53%), Gaps = 17/337 (5%) Query: 15 GSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQE---NFIQSFLTE-MQWMRQLTGPRS 70 G + L +Y+H PFC KKC YC F + YK +E + + L E ++ + L Sbjct: 3 GKSPLALYIHIPFCTKKCHYCSF--YTIPYK--EESVSLYCNAVLKEGLKKLAPLRCSHF 58 Query: 71 ISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGV 130 I ++FFGGGTPSL+ P I IL + EIT+EANP ++ + + G+ Sbjct: 59 IDTVFFGGGTPSLVPPALIQDILKTLEAP----HATEITLEANPENLSESYIRALALTGI 114 Query: 131 NRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI-FPRMSFDLIYALPKQTMTQWEM 189 NRIS+GVQ+ ++ L+ LGR H++S+AI A+ F +S DLIY LP Q+++ + + Sbjct: 115 NRISIGVQTFDDPLLKLLGRTHSSSKAIDAVQECSEHGFSNLSIDLIYGLPTQSLSDFIV 174 Query: 190 ELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLH 249 +L +A++ + H+SLY LTI+ T FYK K + E + ++ + + ++ G Sbjct: 175 DLHQAITLPITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGFT 234 Query: 250 AYEISNHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVR 309 YE+++++ A+S HN YW ++G+G A + G +S H +L+ +R Sbjct: 235 RYELASYAKPQAQSKHNTYYWTDRPFLGLGVSASQYLH-GIRSKNLSRISH---YLRALR 290 Query: 310 KNGHAVVEKEFLSSEQQADEFLMMGLRLREGISVKDW 346 KN E L ++ E L + LRL EGI + D+ Sbjct: 291 KNLPTQESSEELPPNERIKEALALRLRLCEGIPLADF 327 |
Length = 370 |
>gnl|CDD|181428 PRK08446, PRK08446, coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
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Score = 220 bits (562), Expect = 6e-58 Identities = 114/323 (35%), Positives = 163/323 (50%), Gaps = 23/323 (7%) Query: 22 YVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTP 81 Y+H PFC KC YC FNS+ ++ + ++ ++Q+ ++++ + I S+F GGGTP Sbjct: 4 YIHIPFCESKCGYCAFNSYENKHDL-KKEYMQALCLDLKFELEQFTDEKIESVFIGGGTP 62 Query: 82 SLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLE 141 S + + I + I+ +S + EIT EANP+S +G + GVNRIS GVQS Sbjct: 63 STVSAKFYEPIFEIISPY--LSKDCEITTEANPNSATKAWLKGMKNLGVNRISFGVQSFN 120 Query: 142 EQSLRFLGRNHNASEAIAAIHLARNI-FPRMSFDLIYALPKQTMTQWEMELQRALSYAVD 200 E L+FLGR H+ + I AI A+ F +S DLIY P + EL+ A ++ Sbjct: 121 EDKLKFLGRIHSQKQIIKAIENAKKAGFENISIDLIYDTPLDNKKLLKEELKLAKELPIN 180 Query: 201 HLSLYQLTIEKGTLFY-KMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEISNHSFL 259 HLS Y LTIE+ T F+ K HK D EN+A + + G YEISN Sbjct: 181 HLSAYSLTIEENTPFFEKNHKKKD----DENLA---KFFIEQL-EELGFKQYEISNFG-K 231 Query: 260 GAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAVVEKE 319 + HNL YW+ DY+G G GA V ++E + ++ LK E E Sbjct: 232 NYQCKHNLGYWQGKDYLGCGAGAVGFVANKRFYPKKNLENYIKNPLK---------REIE 282 Query: 320 FLSSEQQADEFLMMGLRLREGIS 342 LS E E L +GLR G+ Sbjct: 283 TLSEEDLRLEKLFLGLRSIVGVD 305 |
Length = 350 |
>gnl|CDD|135651 PRK05904, PRK05904, coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
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Score = 149 bits (379), Expect = 8e-37 Identities = 92/327 (28%), Positives = 154/327 (47%), Gaps = 29/327 (8%) Query: 21 VYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGT 80 +Y+H PFC C +CDF ++ + + + FL ++ + + +I+ GGGT Sbjct: 9 LYIHIPFCQYICTFCDFKRILKTPQ--TKKIFKDFLKNIKMHIKNFKIKQFKTIYLGGGT 66 Query: 81 PSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSL 140 P+ + Q + ++L I V +N E TIE NP + + +K VNRISLGVQS+ Sbjct: 67 PNCLNDQLLDILLSTIKP--YVDNNCEFTIECNPELITQSQINLLKKNKVNRISLGVQSM 124 Query: 141 EEQSLRFLGRNHNASEAIAAIH-LARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYAV 199 L+ L R H ++ AI+ L +N +S D +Y LP + + L + + Sbjct: 125 NNNILKQLNRTHTIQDSKEAINLLHKNGIYNISCDFLYCLPILKLKDLDEVFNFILKHKI 184 Query: 200 DHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGL--HAYEISNHS 257 +H+S Y L I++G++ K H + + + L + L YE+SN + Sbjct: 185 NHISFYSLEIKEGSILKKYHY-------TIDEDKEAEQLNYIKAKFNKLNYKRYEVSNWT 237 Query: 258 FLGA-ESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAVV 316 S HNL YWR D+ IG GAH E + E + +N ++ Sbjct: 238 NNFKYISKHNLAYWRTKDWAAIGWGAH------------GFENNIEYFFDGSIQN--WIL 283 Query: 317 EKEFLSSEQQADEFLMMGLRLREGISV 343 K+ L+ + + L+MGLRL++G+ + Sbjct: 284 IKKVLTDHELYQQILIMGLRLKDGLDL 310 |
Length = 353 |
>gnl|CDD|128968 smart00729, Elp3, Elongator protein 3, MiaB family, Radical SAM | Back alignment and domain information |
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Score = 163 bits (415), Expect = 7e-41 Identities = 61/221 (27%), Positives = 117/221 (52%), Gaps = 7/221 (3%) Query: 18 SLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWM-RQLTGPRSISSIFF 76 L +Y+ C ++C +C F S + + ++++ + E++ + + + ++F Sbjct: 1 PLALYIITRGCPRRCTFCSFPSARGKLR---SRYLEALVREIELLAEKGEKEILVGTVFI 57 Query: 77 GGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLG 136 GGGTP+L+ P+ + +L+ I + ++ +VEITIE P ++ + ++AGVNR+SLG Sbjct: 58 GGGTPTLLSPEQLEELLEAIREILGLADDVEITIETRPGTLTEELLEALKEAGVNRVSLG 117 Query: 137 VQSLEEQSLRFLGRNHNASEAIAAIHLARNIFP-RMSFDLIYALPKQTMTQWEMELQRAL 195 VQS ++ L+ + R H + + A+ R P ++S DLI LP +T +E L+ Sbjct: 118 VQSGSDEVLKAINRGHTVEDVLEAVEKLREAGPIKVSTDLIVGLPGETEEDFEETLKLLK 177 Query: 196 SYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLY 236 D +S++ L+ GT K++K L P + ++L Sbjct: 178 ELGPDRVSIFPLSPRPGTPLAKLYK--RLKPPDKEERLELL 216 |
This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases. Length = 216 |
>gnl|CDD|181291 PRK08207, PRK08207, coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
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Score = 131 bits (331), Expect = 4e-31 Identities = 60/245 (24%), Positives = 127/245 (51%), Gaps = 14/245 (5%) Query: 16 SNSLGVYVHWPFCVKKCPYCDFNSH-VRRYKVGQENFIQSFLTEM----QWMRQLTGPRS 70 N + +Y+ PFC +C YC F S+ ++ YK E ++++ E+ +++++ Sbjct: 161 KNEVSIYIGIPFCPTRCLYCSFPSYPIKGYKGLVEPYLEALHYEIEEIGKYLKEK--GLK 218 Query: 71 ISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNV-EITIEAN-PSSVEVNNFQGYRKA 128 I++I+FGGGTP+ + + + +L+ I +N+ NV E T+EA P ++ + +K Sbjct: 219 ITTIYFGGGTPTSLTAEELERLLEEIYENFPDVKNVKEFTVEAGRPDTITEEKLEVLKKY 278 Query: 129 GVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI-FPRMSFDLIYALPKQTMTQW 187 GV+RIS+ Q++ +++L+ +GR+H + I HLAR + F ++ DLI LP + + + Sbjct: 279 GVDRISINPQTMNDETLKAIGRHHTVEDIIEKFHLAREMGFDNINMDLIIGLPGEGLEEV 338 Query: 188 EMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLV-LPSENVAVDLYNLTQSITSAH 246 + L+ + L+++ L I++ + ++ ++ + + + + Sbjct: 339 KHTLEEIEKLNPESLTVHTLAIKRAS---RLTENKEKYKVADREEIEKMMEEAEEWAKEL 395 Query: 247 GLHAY 251 G Y Sbjct: 396 GYVPY 400 |
Length = 488 |
>gnl|CDD|181630 PRK09058, PRK09058, coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
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Score = 118 bits (297), Expect = 3e-27 Identities = 57/209 (27%), Positives = 95/209 (45%), Gaps = 18/209 (8%) Query: 21 VYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQ--LTGPRSISSIFFGG 78 +Y+H PFC C +C F + + + + + E+ LT I +++FGG Sbjct: 64 LYIHIPFCRTHCTFCGFFQNAWNPEAVAR-YTDALIRELAMEADSPLTQSAPIHAVYFGG 122 Query: 79 GTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQ 138 GTP+ + +++A ++ + + ++ + EIT+E + + AG NR S+GVQ Sbjct: 123 GTPTALSAEDLARLITALREYLPLAPDCEITLEGRINGFDDEKADAALDAGANRFSIGVQ 182 Query: 139 SLEEQSLRFLGRNHNASEAIAAIH-LARNIFPRMSF--DLIYALPKQTMTQWEMELQRAL 195 S Q R GR + E +A + L R + DLI+ LP QT W+ +L Sbjct: 183 SFNTQVRRRAGRKDDREEVLARLEELVAR--DRAAVVCDLIFGLPGQTPEIWQQDLAIVR 240 Query: 196 SYAVDHLSLYQL----------TIEKGTL 214 +D + LY L +EKG L Sbjct: 241 DLGLDGVDLYALNLLPGTPLAKAVEKGKL 269 |
Length = 449 |
>gnl|CDD|129629 TIGR00538, hemN, oxygen-independent coproporphyrinogen III oxidase | Back alignment and domain information |
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Score = 117 bits (294), Expect = 7e-27 Identities = 60/212 (28%), Positives = 104/212 (49%), Gaps = 3/212 (1%) Query: 19 LGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQL-TGPRSISSIFFG 77 L +YVH PFC K C +C N + R K + ++ + E+ + L G R +S + +G Sbjct: 50 LSLYVHIPFCHKACYFCGCNVIITRQKHKADPYLDALEKEIALVAPLFDGNRHVSQLHWG 109 Query: 78 GGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGV 137 GGTP+ + P+ I+ ++ I +N+ +++ EI+IE +P + + R G NR+S GV Sbjct: 110 GGTPTYLSPEQISRLMKLIRENFPFNADAEISIEIDPRYITKDVIDALRDEGFNRLSFGV 169 Query: 138 QSLEEQSLRFLGRNHNASEAIAAIHLARNI-FPRMSFDLIYALPKQTMTQWEMELQRALS 196 Q ++ + + R ++ AR F ++ DLIY LPKQT + L++ Sbjct: 170 QDFNKEVQQAVNRIQPEEMIFELMNHAREAGFTSINIDLIYGLPKQTKESFAKTLEKVAE 229 Query: 197 YAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPS 228 D L+++ + K + LPS Sbjct: 230 LNPDRLAVFNYA-HVPWVKPAQRKIPEAALPS 260 |
This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein. Length = 455 |
>gnl|CDD|31436 COG1243, ELP3, Histone acetyltransferase [Transcription / Chromatin structure and dynamics] | Back alignment and domain information |
---|
Score = 64.9 bits (158), Expect = 4e-11 Identities = 52/243 (21%), Positives = 88/243 (36%), Gaps = 44/243 (18%) Query: 31 KCPYCDFN-------SHVRRYKV---GQENFIQSFLTEMQWMRQL-TGPRSISS---IFF 76 +C +C S+ +N + ++QL T + I Sbjct: 81 RCVFCPGGPDKDSPQSYTGEEPAALRAIKNRYDPYEQVRARLKQLETIGHTSDKVELIIM 140 Query: 77 GGGTPSL-IEPQN-------------IALILDGIAKNWT-VSSNVEITIEANPSSV---E 118 GG +L +E Q + + KN T V ITIE P + Sbjct: 141 GGTFTALSLEYQEWFLKVALKAMNDFGYDLEEAQRKNETAELRCVGITIETRPDYIDEEH 200 Query: 119 VNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYA 178 ++ Y GV R+ LGVQS+ + L R H + + A L ++ ++ + ++ Sbjct: 201 LDQMLKY---GVTRVELGVQSIYDDVLERTKRGHTVEDVVEATRLLKDAGFKVGYHIMPG 257 Query: 179 LPKQTMTQWEMELQRAL------SYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVA 232 LP E +L+ + D L +Y + +GT Y+M K G + A Sbjct: 258 LPGSDF---ERDLESFREIFEDPRFRPDMLKIYPTLVIEGTELYEMWKRGLYKPYTTEEA 314 Query: 233 VDL 235 V+L Sbjct: 315 VEL 317 |
Length = 515 |
>gnl|CDD|100105 cd01335, Radical_SAM, Radical SAM superfamily | Back alignment and domain information |
---|
Score = 49.3 bits (117), Expect = 2e-06 Identities = 35/199 (17%), Positives = 73/199 (36%), Gaps = 14/199 (7%) Query: 28 CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQ 87 C C +C + R + + + + + GG P L Sbjct: 7 CNLNCGFCSNPASKGRG----PESPPEIEEILDIVLEAKERG-VEVVILTGGEPLL--YP 59 Query: 88 NIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRF 147 +A +L + K EI+IE N + + + ++ G++ + + + S +E+ Sbjct: 60 ELAELLRRLKK---ELPGFEISIETNGTLLTEELLKELKELGLDGVGVSLDSGDEEVADK 116 Query: 148 L-GRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRAL--SYAVDHLSL 204 + G + E + A+ R +S L+ L + + ++E L + D +SL Sbjct: 117 IRGSGESFKERLEALKELREAGLGLSTTLLVGLGDEDE-EDDLEELELLAEFRSPDRVSL 175 Query: 205 YQLTIEKGTLFYKMHKDGD 223 ++L E+GT Sbjct: 176 FRLLPEEGTPLELAAPVVP 194 |
Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme of the biosynthesis of molybdopterin.. Length = 204 |
>gnl|CDD|181727 PRK09249, PRK09249, coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
---|
Score = 117 bits (296), Expect = 5e-27 Identities = 54/191 (28%), Positives = 99/191 (51%), Gaps = 6/191 (3%) Query: 19 LGVYVHWPFCVKKCPYCDFNSHV-RRYKVGQENFIQSFLTEMQWMR--QLTGPRSISSIF 75 L +YVH PFC C YC N + R ++ ++ + E+ + L R +S + Sbjct: 50 LSLYVHIPFCRSLCYYCGCNKIITRDHEKADP-YLDALEKEIA-LVAALLGPGRPVSQLH 107 Query: 76 FGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISL 135 +GGGTP+ + P+ + ++ + +++ + + EI+IE +P +++ R+ G NR+SL Sbjct: 108 WGGGTPTFLSPEQLRRLMALLREHFNFAPDAEISIEIDPRELDLEMLDALRELGFNRLSL 167 Query: 136 GVQSLEEQSLRFLGRNHNASEAIAAIHLARNI-FPRMSFDLIYALPKQTMTQWEMELQRA 194 GVQ + + + + R A + AR + F ++ DLIY LPKQT + L++ Sbjct: 168 GVQDFDPEVQKAVNRIQPFEFTFALVEAARELGFTSINIDLIYGLPKQTPESFARTLEKV 227 Query: 195 LSYAVDHLSLY 205 L D L+++ Sbjct: 228 LELRPDRLAVF 238 |
Length = 453 |
>gnl|CDD|171993 PRK13347, PRK13347, coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
---|
Score = 107 bits (269), Expect = 6e-24 Identities = 49/207 (23%), Positives = 95/207 (45%), Gaps = 9/207 (4%) Query: 5 SAYENNMTGQGSN-SLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMR 63 Y + G + +Y+H PFC C +C N+ + + E ++ + + E++ + Sbjct: 36 DTYREWLRQIGPEEPVSLYLHVPFCRSLCWFCGCNTIITQRDAPVEAYVAALIREIRLVA 95 Query: 64 QLTGP-RSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNF 122 R +S + +GGGTP+++ P ++ + + + EI +E +P +V Sbjct: 96 ASLPQRRRVSQLHWGGGTPTILNPDQFERLMAALRDAFDFAPEAEIAVEIDPRTVTAEML 155 Query: 123 QGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI----FPRMSFDLIYA 178 Q G NR S GVQ + Q + + R E + A + F ++FDLIY Sbjct: 156 QALAALGFNRASFGVQDFDPQVQKAINRIQ--PEEMVA-RAVELLRAAGFESINFDLIYG 212 Query: 179 LPKQTMTQWEMELQRALSYAVDHLSLY 205 LP QT+ + L + ++ + D ++++ Sbjct: 213 LPHQTVESFRETLDKVIALSPDRIAVF 239 |
Length = 453 |
>gnl|CDD|146602 pfam04055, Radical_SAM, Radical SAM superfamily | Back alignment and domain information |
---|
Score = 83.7 bits (207), Expect = 8e-17 Identities = 39/175 (22%), Positives = 75/175 (42%), Gaps = 12/175 (6%) Query: 22 YVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLT--GPRSISSIFFGGG 79 + P C +C YC F S R K L+ + + + + + GG Sbjct: 1 IIITPGCNLRCTYCAFPSIRARGKGR-------ELSPEEILEEAKELARLGVEVVILTGG 53 Query: 80 TPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQS 139 P L+ + +L+ + K + IT+E N + ++ + ++AG++R+S+ +QS Sbjct: 54 EPLLLPD--LVELLERLLKL-EELEGIRITLETNGTLLDEELLEELKEAGLDRVSISLQS 110 Query: 140 LEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRA 194 +++ L+ + R H E + A+ L R + D I LP + E L+ Sbjct: 111 GDDEVLKIINRGHTFEEVLEALELLREAGIPVVVDNIVGLPGENDEDLEETLELL 165 |
Radical SAM proteins catalyse diverse reactions, including unusual methylations, isomerisation, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Length = 165 |
>gnl|CDD|148535 pfam06969, HemN_C, HemN C-terminal region | Back alignment and domain information |
---|
Score = 114 bits (287), Expect = 5e-26 Identities = 47/120 (39%), Positives = 64/120 (53%), Gaps = 6/120 (5%) Query: 267 LNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQ 326 L YWR GDY+G+GPGAHS + G R K +++LK V G + E LS E + Sbjct: 1 LGYWRGGDYLGLGPGAHSFIDGGGVRY--QNVKDLKAYLKAVEAGGLPIERGERLSPEDR 58 Query: 327 ADEFLMMGLRLREGISVKDWEMLAGRNLDIECE---RNLQRQGFIERVQFSRLRCTQRGM 383 E L++GLRL EG+ + +E G + + E E LQ G +E + RLR T RG Sbjct: 59 LRERLILGLRLTEGLDLAAFEQRFGLDFEEEYEPLLEKLQEDGLLE-LDDGRLRLTPRGR 117 |
Members of this family are all oxygen-independent coproporphyrinogen-III oxidases (HemN). This enzyme catalyses the oxygen-independent conversion of coproporphyrinogen-III to protoporphyrinogen-IX, one of the last steps in haem biosynthesis. The function of this domain is unclear, but comparison to other proteins containing a radical SAM domain (pfam04055) suggest it may be a substrate binding domain. Length = 118 |
>gnl|CDD|181509 PRK08629, PRK08629, coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
---|
Score = 94.0 bits (234), Expect = 7e-20 Identities = 71/267 (26%), Positives = 124/267 (46%), Gaps = 19/267 (7%) Query: 22 YVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTP 81 Y H PFC CPYC F+ + + FI S EM+ +++L G S++ GGGT Sbjct: 56 YAHVPFCHTLCPYCSFHRFYFKEDKARAYFI-SLRKEMEMVKEL-GYD-FESMYVGGGTT 112 Query: 82 SLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLE 141 +++E + +A L+ +AK + S E++ E++P+ ++ + K ++R+S+GVQS Sbjct: 113 TILEDE-LAKTLE-LAK--KLFSIKEVSCESDPNHLDPPKLKQL-KGLIDRLSIGVQSFN 167 Query: 142 EQSLRFLGRNH---NASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYA 198 + L+ + R + E I A+ +FP ++ DLI+ P QT + +L A Sbjct: 168 DDILKMVDRYEKFGSGQETFEKIMKAKGLFPIINVDLIFNFPGQTDEVLQHDLDIAKRLD 227 Query: 199 VDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEISNHSF 258 ++ Y L T + G L ++ Y Q I G + ++S +F Sbjct: 228 PRQITTYPLMKSHQT---RKSVKGSLGASQKDNERQYY---QIINELFGQY-NQLSAWAF 280 Query: 259 LGAESLHNLNY-WRYGDYIGIGPGAHS 284 Y Y +Y+G+G G+ S Sbjct: 281 SKKNDEGFDEYVIDYDEYLGVGSGSFS 307 |
Length = 433 |
>gnl|CDD|162253 TIGR01211, ELP3, histone acetyltransferase, ELP3 family | Back alignment and domain information |
---|
Score = 51.7 bits (124), Expect = 4e-07 Identities = 37/161 (22%), Positives = 68/161 (42%), Gaps = 16/161 (9%) Query: 85 EPQNIALILDGIAKNWTVSS-NVEITIEANPS---SVEVNNFQGYRKAGVNRISLGVQSL 140 E + + + + I N T V +TIE P ++ G R+ LGVQ++ Sbjct: 171 ELKGNSTLEEAIRINETSKHRCVGLTIETRPDYCREEHIDRMLKL---GATRVELGVQTI 227 Query: 141 EEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQ--RAL--- 195 L R H + + A L R+ ++ + ++ LP + E +L+ R + Sbjct: 228 YNDILERTKRGHTVRDVVEATRLLRDAGLKVVYHIMPGLPGSSF---ERDLEMFREIFED 284 Query: 196 -SYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDL 235 + D L +Y + +GT Y++ K G+ + AV+L Sbjct: 285 PRFKPDMLKIYPTLVTRGTELYELWKRGEYKPYTTEEAVEL 325 |
The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases. Length = 522 |
>gnl|CDD|37746 KOG2535, KOG2535, KOG2535, RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics, Transcription] | Back alignment and domain information |
---|
Score = 43.0 bits (101), Expect = 1e-04 Identities = 35/134 (26%), Positives = 57/134 (42%), Gaps = 5/134 (3%) Query: 106 VEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLAR 165 + ITIE P + G R+ +GVQS+ E R R H + HLA+ Sbjct: 223 IGITIETRPDYCLKRHLSDMLTYGCTRLEIGVQSVYEDVARDTNRGHTVKAVCESFHLAK 282 Query: 166 N----IFPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKD 221 + + M DL ++ + Q++ E ++ D L +Y + +GT Y++ K Sbjct: 283 DAGFKVVAHMMPDLPNVGMERDIEQFK-EYFENPAFRPDGLKIYPTLVIRGTGLYELWKT 341 Query: 222 GDLVLPSENVAVDL 235 G S + VDL Sbjct: 342 GRYKSYSPSALVDL 355 |
Length = 554 |
>gnl|CDD|31435 COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
---|
Score = 49.8 bits (119), Expect = 1e-06 Identities = 27/103 (26%), Positives = 50/103 (48%) Query: 133 ISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQ 192 + LG+Q+ +++L+ + R H+ + + A+ R ++ LI LP +T + + Sbjct: 146 VELGLQTAHDKTLKRINRGHDFACYVDAVKRLRKRGIKVCTHLINGLPGETRDEMLETAK 205 Query: 193 RALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDL 235 VD + L+ L + KGT KM++ G L S V+L Sbjct: 206 IVAELGVDGIKLHPLHVVKGTPMEKMYEKGRLKFLSLEEYVEL 248 |
Length = 312 |
>gnl|CDD|130279 TIGR01212, TIGR01212, radical SAM protein, TIGR01212 family | Back alignment and domain information |
---|
Score = 49.8 bits (119), Expect = 1e-06 Identities = 24/103 (23%), Positives = 50/103 (48%) Query: 133 ISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQ 192 + LG+Q+ +++L+ + R H+ + + A+ AR ++ +I LP + + + Sbjct: 141 VELGLQTAHDKTLKKINRGHDFACYVDAVKRARKRGIKVCSHVILGLPGEDREEMMETAK 200 Query: 193 RALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDL 235 VD + ++ L + KGT KM++ G+L S + L Sbjct: 201 IVSLLDVDGIKIHPLHVVKGTKMAKMYEKGELKTLSLEEYISL 243 |
This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain. Length = 302 |
Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 395 | coproporphyrinogen III oxidase [Candidatus Liberibacter | ||
PRK09057 | 381 | coproporphyrinogen III oxidase; Provisional | 100.0 | |
PRK08599 | 377 | coproporphyrinogen III oxidase; Provisional | 100.0 | |
PRK06582 | 390 | coproporphyrinogen III oxidase; Provisional | 100.0 | |
PRK05628 | 376 | coproporphyrinogen III oxidase; Validated | 100.0 | |
PRK05799 | 374 | coproporphyrinogen III oxidase; Provisional | 100.0 | |
PRK07379 | 399 | coproporphyrinogen III oxidase; Provisional | 100.0 | |
PRK08898 | 393 | coproporphyrinogen III oxidase; Provisional | 100.0 | |
PRK08807 | 385 | consensus | 100.0 | |
PRK05660 | 378 | coproporphyrinogen III oxidase; Provisional | 100.0 | |
PRK08949 | 378 | consensus | 100.0 | |
PRK08208 | 436 | coproporphyrinogen III oxidase; Validated | 100.0 | |
PRK06294 | 374 | coproporphyrinogen III oxidase; Provisional | 100.0 | |
PRK13347 | 453 | coproporphyrinogen III oxidase; Provisional | 100.0 | |
PRK09249 | 456 | coproporphyrinogen III oxidase; Provisional | 100.0 | |
PRK09058 | 447 | coproporphyrinogen III oxidase; Provisional | 100.0 | |
COG0635 | 416 | HemN Coproporphyrinogen III oxidase and related Fe-S ox | 100.0 | |
PRK08446 | 351 | coproporphyrinogen III oxidase; Provisional | 100.0 | |
PRK05904 | 353 | coproporphyrinogen III oxidase; Provisional | 100.0 | |
PRK08629 | 424 | coproporphyrinogen III oxidase; Provisional | 100.0 | |
TIGR00539 | 371 | hemN_rel putative oxygen-independent coproporphyrinogen | 100.0 | |
TIGR00538 | 462 | hemN oxygen-independent coproporphyrinogen III oxidase; | 100.0 | |
PRK08207 | 497 | coproporphyrinogen III oxidase; Provisional | 100.0 | |
TIGR00433 | 350 | bioB biotin synthase; InterPro: IPR002684 Biotin syntha | 98.64 | |
smart00729 | 216 | Elp3 Elongator protein 3, MiaB family, Radical SAM. Thi | 99.97 | |
COG1243 | 515 | ELP3 Histone acetyltransferase [Transcription / Chromat | 99.96 | |
TIGR01212 | 307 | TIGR01212 radical SAM protein, TIGR01212 family; InterP | 99.94 | |
TIGR03471 | 472 | HpnJ hopanoid biosynthesis associated radical SAM prote | 99.93 | |
TIGR01211 | 573 | ELP3 histone acetyltransferase, ELP3 family; InterPro: | 99.92 | |
TIGR00089 | 455 | TIGR00089 RNA modification enzyme, MiaB family; InterPr | 99.92 | |
COG1242 | 312 | Predicted Fe-S oxidoreductase [General function predict | 99.9 | |
COG0621 | 437 | MiaB 2-methylthioadenine synthetase [Translation, ribos | 99.88 | |
TIGR01574 | 456 | miaB-methiolase tRNA-i(6)A37 thiotransferase enzyme Mia | 99.87 | |
cd01335 | 204 | Radical_SAM Radical SAM superfamily. Enzymes of this fa | 99.84 | |
TIGR01579 | 492 | MiaB-like-C MiaB-like tRNA modifying enzyme; InterPro: | 99.81 | |
COG1032 | 490 | Fe-S oxidoreductase [Energy production and conversion] | 99.79 | |
PRK07094 | 323 | biotin synthase; Provisional | 99.76 | |
TIGR01578 | 487 | MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-t | 99.72 | |
PRK06256 | 325 | biotin synthase; Validated | 99.63 | |
PRK06267 | 324 | hypothetical protein; Provisional | 99.62 | |
KOG2535 | 554 | consensus | 99.58 | |
TIGR01125 | 475 | TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR011 | 99.57 | |
PRK08508 | 279 | biotin synthase; Provisional | 99.55 | |
COG1031 | 560 | Uncharacterized Fe-S oxidoreductase [Energy production | 99.45 | |
TIGR02026 | 506 | BchE magnesium-protoporphyrin IX monomethyl ester anaer | 99.43 | |
COG0502 | 335 | BioB Biotin synthase and related enzymes [Coenzyme meta | 99.42 | |
COG1244 | 358 | Predicted Fe-S oxidoreductase [General function predict | 99.42 | |
TIGR03551 | 343 | F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin sy | 99.35 | |
KOG2492 | 552 | consensus | 99.24 | |
PRK07360 | 375 | FO synthase subunit 2; Reviewed | 99.11 | |
COG1060 | 370 | ThiH Thiamine biosynthesis enzyme ThiH and related unch | 99.09 | |
PRK05927 | 350 | hypothetical protein; Provisional | 99.0 | |
PRK06245 | 336 | cofG FO synthase subunit 1; Reviewed | 98.97 | |
PRK05301 | 375 | pyrroloquinoline quinone biosynthesis protein PqqE; Pro | 98.94 | |
COG0535 | 347 | Predicted Fe-S oxidoreductases [General function predic | 98.9 | |
PRK00164 | 334 | moaA molybdenum cofactor biosynthesis protein A; Review | 98.82 | |
PRK05926 | 371 | hypothetical protein; Provisional | 98.81 | |
PRK13361 | 329 | molybdenum cofactor biosynthesis protein A; Provisional | 98.78 | |
PRK09234 | 846 | fbiC FO synthase; Reviewed | 98.77 | |
COG2896 | 322 | MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme | 98.74 | |
TIGR03550 | 322 | F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin sy | 98.74 | |
COG1856 | 275 | Uncharacterized homolog of biotin synthetase [Function | 98.72 | |
PRK13758 | 370 | anaerobic sulfatase-maturase; Provisional | 98.71 | |
) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) . This entry represents the bacterial form of MoaA (molybdenum cofactor biosynthesis protein A). The MoaA protein is a member of the wider S-adenosylmethionine(SAM)-dependent enzyme family which catalyze the formation of protein and/or substrate radicals by reductive cleavage of SAM via a [4Fe-4S] cluster. Monomeric and homodimeric forms of MoaA have been observed in vivo, and it is not clear what the physiologically relevant form of the enzyme is . The core of each monomer consists of an incomplete TIM barrel, formed by the N-terminal region of the protein, containing a [4Fe-4S] cluster. The C-terminal region of the protein, which also contains a [4Fe-4S] cluster consists of a beta-sheet covering the lateral opening of the barrel, an extended loop and three alpha helices. The N-terminal [4Fe-4S] cluster is coordinated with 3 cysteines and an exchangeable SAM molecule, while the C-terminal [4Fe-4S], also coordinated with 3 cysteines, is the binding and activation site for GTP .; GO: 0046872 metal ion binding, 0006777 Mo-molybdopterin cofactor biosynthetic process." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=TIGR02666">TIGR02666 | 346 | moaA molybdenum cofactor biosynthesis protein A; InterP | 98.67 | |
PRK13745 | 412 | anaerobic sulfatase-maturase; Provisional | 98.57 | |
PRK09613 | 471 | thiH thiamine biosynthesis protein ThiH; Reviewed | 98.17 | |
TIGR02668 | 324 | moaA_archaeal probable molybdenum cofactor biosynthesis | 98.11 | |
COG1533 | 297 | SplB DNA repair photolyase [DNA replication, recombinat | 98.09 | |
COG1180 | 260 | PflA Pyruvate-formate lyase-activating enzyme [Posttran | 98.08 | |
TIGR02493 | 243 | PFLA pyruvate formate-lyase 1-activating enzyme; InterP | 97.91 | |
TIGR01210 | 329 | TIGR01210 conserved hypothetical protein TIGR01210; Int | 97.72 | |
COG2108 | 353 | Uncharacterized conserved protein related to pyruvate f | 97.62 | |
KOG2900 | 380 | consensus | 97.35 | |
PRK00955 | 599 | hypothetical protein; Provisional | 97.35 | |
PRK01254 | 742 | hypothetical protein; Provisional | 97.28 | |
TIGR02495 | 220 | NrdG2 anaerobic ribonucleoside-triphosphate reductase a | 97.02 | |
KOG2672 | 360 | consensus | 96.26 | |
KOG2876 | 323 | consensus | 91.23 | |
COG5014 | 228 | Predicted Fe-S oxidoreductase [General function predict | 90.36 | |
pfam06969 | 118 | HemN_C HemN C-terminal region. Members of this family a | 99.86 | |
pfam04055 | 165 | Radical_SAM Radical SAM superfamily. Radical SAM protei | 99.64 | |
PRK09240 | 371 | thiH thiamine biosynthesis protein ThiH; Reviewed | 98.77 | |
TIGR02351 | 378 | thiH thiazole biosynthesis protein ThiH; InterPro: IPR0 | 98.28 | |
PRK08444 | 353 | hypothetical protein; Provisional | 99.08 | |
PRK08445 | 348 | hypothetical protein; Provisional | 99.07 | |
TIGR03470 | 318 | HpnH hopanoid biosynthesis associated radical SAM prote | 98.7 | |
COG0641 | 378 | AslB Arylsulfatase regulator (Fe-S oxidoreductase) [Gen | 98.7 | |
COG2100 | 414 | Predicted Fe-S oxidoreductase [General function predict | 98.66 | |
PRK11145 | 246 | pflA pyruvate formate lyase-activating enzyme 1; Provis | 98.62 | |
TIGR02109 | 363 | PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E; Inter | 98.55 | |
PRK09234 | 846 | fbiC FO synthase; Reviewed | 98.46 | |
TIGR00423 | 331 | TIGR00423 conserved hypothetical protein TIGR00423; Int | 98.28 | |
COG0320 | 306 | LipA Lipoate synthase [Coenzyme metabolism] | 98.21 | |
COG2516 | 339 | Biotin synthase-related enzyme [General function predic | 98.2 | |
PRK12928 | 290 | lipoyl synthase; Provisional | 98.2 | |
PRK05481 | 289 | lipoyl synthase; Provisional | 98.19 | |
COG0731 | 296 | Fe-S oxidoreductases [Energy production and conversion] | 98.1 | |
COG1509 | 369 | KamA Lysine 2,3-aminomutase [Amino acid transport and m | 97.75 | |
COG0820 | 349 | Predicted Fe-S-cluster redox enzyme [General function p | 97.66 | |
PRK11194 | 372 | hypothetical protein; Provisional | 97.49 | |
TIGR00510 | 310 | lipA lipoic acid synthetase; InterPro: IPR003698 Lipoic | 96.71 | |
COG4277 | 404 | Predicted DNA-binding protein with the Helix-hairpin-he | 96.28 | |
TIGR00048 | 378 | TIGR00048 radical SAM enzyme, Cfr family; InterPro: IPR | 94.92 | |
PRK13762 | 321 | tRNA-modifying enzyme; Provisional | 91.53 | |
KOG4355 | 547 | consensus | 99.05 | |
TIGR03278 | 404 | methan_mark_10 putative methanogenesis marker protein 1 | 97.62 | |
COG1625 | 414 | Fe-S oxidoreductase, related to NifB/MoaA family [Energ | 97.58 | |
PRK10076 | 213 | pyruvate formate lyase II activase; Provisional | 97.35 | |
TIGR03365 | 238 | Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesi | 96.66 | |
COG0602 | 212 | NrdG Organic radical activating enzymes [Posttranslatio | 94.83 | |
TIGR02491 | 158 | NrdG anaerobic ribonucleoside-triphosphate reductase ac | 92.01 | |
PRK11121 | 154 | nrdG anaerobic ribonucleotide reductase-activating prot | 91.91 | |
COG2238 | 147 | RPS19A Ribosomal protein S19E (S16A) [Translation, ribo | 94.92 | |
PRK09333 | 150 | 30S ribosomal protein S19e; Provisional | 94.61 | |
PRK03902 | 142 | manganese transport transcriptional regulator; Provisio | 93.76 | |
PRK11512 | 144 | DNA-binding transcriptional repressor MarR; Provisional | 93.75 | |
PRK11050 | 155 | manganese transport regulator MntR; Provisional | 93.5 | |
pfam01090 | 140 | Ribosomal_S19e Ribosomal protein S19e. | 92.98 | |
PRK10870 | 176 | transcriptional repressor MprA; Provisional | 92.76 | |
smart00529 | 96 | HTH_DTXR Helix-turn-helix diphteria tox regulatory elem | 92.57 | |
PTZ00095 | 169 | 40S ribosomal protein S19; Provisional | 91.89 | |
smart00347 | 101 | HTH_MARR helix_turn_helix multiple antibiotic resistanc | 90.95 | |
COG0656 | 280 | ARA1 Aldo/keto reductases, related to diketogulonate re | 93.07 | |
COG1964 | 475 | Predicted Fe-S oxidoreductases [General function predic | 92.52 | |
TIGR02402 | 564 | trehalose_TreZ malto-oligosyltrehalose trehalohydrolase | 90.8 |
>PRK09057 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
---|
Probab=100.00 E-value=0 Score=783.10 Aligned_cols=380 Identities=58% Similarity=1.010 Sum_probs=364.7 Q ss_pred CCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHH Q ss_conf 98854999940651183765773024578866288999999999999987618950589996288888789999999997 Q gi|254780628|r 15 GSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILD 94 (395) Q Consensus 15 ~~~~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~ 94 (395) T Consensus 1 ~~~pLgLYiHIPFC~~~C~YCdf~~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~i~tiy~GGGTPs~L~~~~l~~ll~ 80 (381) T PRK09057 1 GDGGFGLYVHWPFCLAKCPYCDFNSHVRHAPIDQARFAAAFLRELATEAARTGPRTLTSIFFGGGTPSLMQPETVAALLD 80 (381) T ss_pred CCCCEEEEEEECCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHCCCHHHHHHHHH T ss_conf 99851899981788882899949870178878799999999999999998759993579997996123099999999999 Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCC Q ss_conf 66404764443321133210410023477663034541143234332013455422443134789999863024443332 Q gi|254780628|r 95 GIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFD 174 (395) Q Consensus 95 ~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iD 174 (395) T Consensus 81 ~l~~~f~~~~~~EiTiE~nP~~~~~~~l~~l~~~GvnRiSlGVQsf~~~~l~~lgR~h~~~~~~~ai~~~r~~f~~in~D 160 (381) T PRK09057 81 AIARLWPVADDIEITLEANPTSVEAGRFRGYRAAGVNRVSLGVQALNDADLRFLGRLHSVAEALAAIDLAREIFPRVSFD 160 (381) T ss_pred HHHHHCCCCCCCEEEEECCHHHCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHH T ss_conf 99986798657236772374220167999999709876989623499999997389998999999999999865451206 Q ss_pred CCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 10002585432211127887531800123464688259600014544980211035678899986557887096242367 Q gi|254780628|r 175 LIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEIS 254 (395) Q Consensus 175 li~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~Yeis 254 (395) T Consensus 161 LiyGlPgQt~~~~~~~l~~~~~l~p~hiS~Y~L~~e~~t~~~~~~~~g~~~~p~~d~~~~~y~~~~~~L~~~Gy~~YEiS 240 (381) T PRK09057 161 LIYARPGQTLAAWRAELKEALGLAADHLSLYQLTIEEGTAFYGLHAAGKLTLPDEDLAADLYELTQEVTAAAGLPAYEIS 240 (381) T ss_pred HHCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEECC T ss_conf 64279889888999999999712777432235664489727878755888999999999999999999996798743246 Q ss_pred CHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHH Q ss_conf 43431011013321124441232043200115788615786542470257787753896333224549999899999996 Q gi|254780628|r 255 NHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEFLMMG 334 (395) Q Consensus 255 ~fak~~~~s~hn~~Yw~~~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i~~~~~p~~~~~~Ls~~e~~~e~l~~~ 334 (395) T Consensus 241 nfAkpg~~srhN~~YW~~~~ylGiG~gA~s~~~~~~~r~~~~~~~~~~~y~~~i~~~~~~~~~~~~L~~~d~~~e~l~l~ 320 (381) T PRK09057 241 NHARPGAESRHNLTYWRYGDYAGIGPGAHGRLTLNGTRHATATEKAPEAWLERVERNGHGIIEEERLDPEERADEFLLMG 320 (381) T ss_pred CCCCCCCHHHCCCCCCCCCCCEEEECCEEEEECCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCEECCHHHHHHHHHHHH T ss_conf 54689732103335447998279846955784379807886423799999999971899766211379989999999998 Q ss_pred HHHCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHHHC Q ss_conf 562379988899988389964999999998799498559899995675898999999861 Q gi|254780628|r 335 LRLREGISVKDWEMLAGRNLDIECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLA 394 (395) Q Consensus 335 LR~~~Gid~~~~~~~fg~~~~~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~l~ 394 (395) T Consensus 321 LR~~~Gid~~~~~~~~g~~l~~~~l~~l~~~Gll~~~~~~rl~lT~~G~~l~d~v~~eLl 380 (381) T PRK09057 321 LRLREGIDLARYAALSGRPLDPARLALLIEEGLIERDGDSRLRATPAGRLVLDAVVADLA 380 (381) T ss_pred HHHHCCCCHHHHHHHHCCCCCHHHHHHHHHCCCEEEECCCEEEECHHHHHHHHHHHHHHC T ss_conf 886579999999999789968999999997899798089869999788799999999970 |
|
>PRK08599 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
---|
Probab=100.00 E-value=0 Score=759.53 Aligned_cols=371 Identities=33% Similarity=0.586 Sum_probs=351.7 Q ss_pred CEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHH Q ss_conf 54999940651183765773024578866288999999999999987618950589996288888789999999997664 Q gi|254780628|r 18 SLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIA 97 (395) Q Consensus 18 ~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~ 97 (395) T Consensus 1 Pl~lYiHIPFC~~~C~yC~f~~~~~~~~-~~~~Y~~aL~~Ei~~~~~~-~~~~~~tiy~GGGTPs~L~~~~l~~ll~~i~ 78 (377) T PRK08599 1 PTSAYIHIPFCEHICYYCDFNKVFIENQ-PVDEYLDALIKEMESTVAK-YIRKLKTIYIGGGTPTALSAEQLERLLNAIH 78 (377) T ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHHH-CCCCEEEEEECCCCCCCCCHHHHHHHHHHHH T ss_conf 9589997278998689996916468987-7999999999999976551-4995579997998100099999999999999 Q ss_pred HCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC-CCCCCCCCC Q ss_conf 0476444332113321041002347766303454114323433201345542244313478999986302-444333210 Q gi|254780628|r 98 KNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI-FPRMSFDLI 176 (395) Q Consensus 98 ~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~-~~~v~iDli 176 (395) T Consensus 79 ~~f~~~~~~EiTiE~nP~~~~~~~l~~l~~~GvNRiSlGvQsf~~~~l~~lgR~h~~~~~~~~i~~~r~~gf~~iniDLI 158 (377) T PRK08599 79 RTLPLSDLEEFTFEANPGDLTKEKLQVLKDYGVNRISLGVQTFNDELLKKIGRTHNEEDVYESIANAKKAGFKNISIDLI 158 (377) T ss_pred HHCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEEE T ss_conf 97697767327999551516399999999709987999653598799998689998999999999999759974115654 Q ss_pred CCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCH Q ss_conf 00258543221112788753180012346468825960001454498021103567889998655788709624236743 Q gi|254780628|r 177 YALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEISNH 256 (395) Q Consensus 177 ~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~Yeis~f 256 (395) T Consensus 159 yGlP~Qt~~~~~~~l~~~~~l~p~hiS~Y~L~ie~~t~~~~~~~~g~~~lp~~d~~~~m~~~~~~~L~~~Gy~~yeisnf 238 (377) T PRK08599 159 YALPGQTIEDVKESLDKALALDIPHYSLYSLILEPKTVFYNLMRKGKLRLPTEDLEAEMYEYLMSEMEKHGFHQYEISNF 238 (377) T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHH T ss_conf 27888989999999999973063634554423358876888875598789997999999999999999759974120331 Q ss_pred HHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHHHH Q ss_conf 43101101332112444123204320011578861578654247025778775389633322454999989999999656 Q gi|254780628|r 257 SFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEFLMMGLR 336 (395) Q Consensus 257 ak~~~~s~hn~~Yw~~~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i~~~~~p~~~~~~Ls~~e~~~e~l~~~LR 336 (395) T Consensus 239 ak~g~~s~hN~~Yw~~~~ylGiG~gA~s~~~~~----r~~N~~~l~~Y~~~i~~g~~p~~~~~~ls~~~~~~e~i~~~Lr 314 (377) T PRK08599 239 AKPGFESRHNLTYWNNEEYYGFGAGASGYVNGV----RYQNIGPIKHYLKAINEEGFPRLNEHVLTKKEQMEEEMFLGLR 314 (377) T ss_pred CCCCCHHHCCCCEECCCCCEEECCCCEEECCCE----EEEECCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHH T ss_conf 378722203302456996326658710553873----6981699999999997799964467668998999999999999 Q ss_pred HCCCCCHHHHHHHHCCCHHHHH---HHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHHHCC Q ss_conf 2379988899988389964999---9999987994985598999956758989999998619 Q gi|254780628|r 337 LREGISVKDWEMLAGRNLDIEC---ERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLAV 395 (395) Q Consensus 337 ~~~Gid~~~~~~~fg~~~~~~~---~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~l~i 395 (395) T Consensus 315 ~~~gi~~~~~~~~fg~~~~~~~~~~l~~l~~~Gll~-~~~~~i~lT~~G~~~~~~I~~~fl~ 375 (377) T PRK08599 315 KKSGVSKARFEEKFGQSFEEVFGETIQELQEQGLLE-EDDDFVRLTKKGKFLGNEVFEAFLL 375 (377) T ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCEE-ECCCEEEECHHHHHHHHHHHHHHCC T ss_conf 768979999999989299999999999999779899-8099999998489999999998746 |
|
>PRK06582 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
---|
Probab=100.00 E-value=0 Score=755.02 Aligned_cols=378 Identities=42% Similarity=0.785 Sum_probs=354.5 Q ss_pred CCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHH Q ss_conf 98854999940651183765773024578866288999999999999987618950589996288888789999999997 Q gi|254780628|r 15 GSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILD 94 (395) Q Consensus 15 ~~~~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~ 94 (395) T Consensus 8 ~~~~lsLYiHIPFC~~~C~yC~f~~~~~~~~-~~~~y~~~l~~Ei~~~~~~~~~~~i~tiy~GGGTPs~L~~~~l~~l~~ 86 (390) T PRK06582 8 MANDLSIYIHWPFCLSKCPYCDFNSHVASTI-DHNQWLKSYEKEIEYFKDIIQNKYIKSIFFGGGTPSLMNPVIVEGIIN 86 (390) T ss_pred CCCCEEEEEEECCCCCCCCCCCCCCEECCCC-CHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHCCHHHHHHHHH T ss_conf 0777499998389988089993907148858-899999999999999887647980579998985135289999999999 Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCC Q ss_conf 66404764443321133210410023477663034541143234332013455422443134789999863024443332 Q gi|254780628|r 95 GIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFD 174 (395) Q Consensus 95 ~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iD 174 (395) T Consensus 87 ~l~~~~~~~~~~EiTiE~nP~~~~~~~l~~l~~~GvNRiSiGVQsf~~~~L~~lgR~h~~~~~~~~i~~~~~~f~niniD 166 (390) T PRK06582 87 KISNLAIIDNQTEITLETNPTSFETEKFKAFKSAGINRVSIGVQSLKEDDLKKLGRTHDCMQAIKTIEAANTIFPRVSFD 166 (390) T ss_pred HHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEE T ss_conf 99985788887348998443206198999998559867999713389899997189988999999999998746335445 Q ss_pred CCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 10002585432211127887531800123464688259600014544980211035678899986557887096242367 Q gi|254780628|r 175 LIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEIS 254 (395) Q Consensus 175 li~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~Yeis 254 (395) T Consensus 167 LI~GlP~QT~~~~~~~L~~~~~l~p~hiS~Y~L~ie~~t~~~~~~~~g~~~lp~~d~~~~~y~~~~~~L~~~Gy~~yeis 246 (390) T PRK06582 167 LIYARSGQTLKDWQEELKQAMQLATSHISLYQLTIEKGTPFYKLFKEGNLILPHSDAAAEMYEWTNHYLESKKYFRYEIS 246 (390) T ss_pred EECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEECCC T ss_conf 41479999899999999999833898517898885379778888741898999889999999999999984598604450 Q ss_pred CHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCEE-EEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHH Q ss_conf 434310110133211244412320432001157886157-8654247025778775389633322454999989999999 Q gi|254780628|r 255 NHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRV-AISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEFLMM 333 (395) Q Consensus 255 ~fak~~~~s~hn~~Yw~~~d~iG~G~GA~S~l~~~~~~~-~~~~~~~~~~Y~~~i~~~~~p~~~~~~Ls~~e~~~e~l~~ 333 (395) T Consensus 247 nfakpg~e~~HN~~yW~~~~ylG~G~gA~s~~~~~~~~~~~~~~~~~~~~y~~~i~~~~~~i~~~~~Ls~~d~~~e~ii~ 326 (390) T PRK06582 247 NYAKIGQECLHNLTYWNYNSYLGIGPGAHSRIIENSSSVSAIMMWHKPEKWLDAVKTKNVGIQTNTKLTHQEIIEEILMM 326 (390) T ss_pred CCCCCCHHHHHHHCCCCCCCCEEECCCEEEEECCCCCCHHHHHHHCCHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHH T ss_conf 00478777754432356998089764807761168753137776408999999997499965555518988999999999 Q ss_pred HHHHCCCCCHHHHHHHHCCCHHHH----HHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHHHCC Q ss_conf 656237998889998838996499----99999987994985598999956758989999998619 Q gi|254780628|r 334 GLRLREGISVKDWEMLAGRNLDIE----CERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLAV 395 (395) Q Consensus 334 ~LR~~~Gid~~~~~~~fg~~~~~~----~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~l~i 395 (395) T Consensus 327 gLR~~~Gid~~~~~~~fg~~~~~~~~~~~l~~l~~~gLi~-~d-~~i~LT~kG~ll~n~I~~~ll~ 390 (390) T PRK06582 327 GLRLSKGINISTLEQKLNTKLENILDMNNLKHYQALDLIR-LD-ENIYLTDKGLMLHSYIVPRLII 390 (390) T ss_pred HHHHHCCCCHHHHHHHHCCCHHHHHCHHHHHHHHHCCCEE-EC-CEEEECHHHHHHHHHHHHHHHC T ss_conf 8998689089999999893999971989999999797989-89-9899996688899999999719 |
|
>PRK05628 coproporphyrinogen III oxidase; Validated | Back alignment and domain information |
---|
Probab=100.00 E-value=0 Score=753.15 Aligned_cols=369 Identities=36% Similarity=0.617 Sum_probs=347.4 Q ss_pred CCEEEEEECCCCCCCCCCCCCEEEECC---CCCCHHHHHHHHHHHHHHHHHHHC--CCEEEEEEECCCCCCCCCHHHHHH Q ss_conf 854999940651183765773024578---866288999999999999987618--950589996288888789999999 Q gi|254780628|r 17 NSLGVYVHWPFCVKKCPYCDFNSHVRR---YKVGQENFIQSFLTEMQWMRQLTG--PRSISSIFFGGGTPSLIEPQNIAL 91 (395) Q Consensus 17 ~~l~lYihiPFC~~~C~yC~f~~~~~~---~~~~~~~y~~~l~~Ei~~~~~~~~--~~~~~~iy~GGGTPs~l~~~~l~~ 91 (395) T Consensus 1 ~PlsLYiHiPFC~~~C~yC~f~~~~~~~~~~~~~~~~Y~~~L~~Ei~~~~~~l~~~~~~i~tiy~GGGTPs~L~~~~l~~ 80 (376) T PRK05628 1 RPFGVYVHVPFCATRCGYCDFNTYTAAELGGGASPDGYLDALRAELELAAAVLGDPAPPVSTVFVGGGTPSLLGAEGLAR 80 (376) T ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHCCHHHHHH T ss_conf 98589987057646089997957336524787679999999999999998761778965789997894466489999999 Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC-CCC Q ss_conf 9976640476444332113321041002347766303454114323433201345542244313478999986302-444 Q gi|254780628|r 92 ILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI-FPR 170 (395) Q Consensus 92 ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~-~~~ 170 (395) T Consensus 81 l~~~i~~~f~~~~~~EiTiE~nP~~~~~~~l~~l~~~GvnRiSlGvQsf~~~~l~~lgR~h~~~~~~~~~~~~~~~gf~~ 160 (376) T PRK05628 81 VLDAVRDTFGLAPDAEVTTEANPESTSPEFFAALRAAGYTRVSLGMQSAAPHVLAVLDRTHTPGRAVAAAREARAAGFEH 160 (376) T ss_pred HHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCHHHHHHHHHHHHHCCCCC T ss_conf 99999975899988569998342658999999999749875999515589999997499999899999999998759972 Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 33321000258543221112788753180012346468825960001454498021103567889998655788709624 Q gi|254780628|r 171 MSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHA 250 (395) Q Consensus 171 v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~ 250 (395) T Consensus 161 in~DLIyGlP~Qt~~~~~~~l~~~~~l~p~his~Y~l~~e~~t~~~~~~~~~~l~~p~e~~~~~~~~~~~~~L~~~Gy~~ 240 (376) T PRK05628 161 VNLDLIYGTPGETDDDLRRSLDAALEAGVDHVSAYALIVEDGTALARRVRRGELPAPDDDVLADRYELADARLSAAGFDW 240 (376) T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC T ss_conf 55554427999999999999999973289815665556547867777775178999999999999999999998478761 Q ss_pred CCCCCHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHH Q ss_conf 23674343101101332112444123204320011578861578654247025778775389633322454999989999 Q gi|254780628|r 251 YEISNHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEF 330 (395) Q Consensus 251 Yeis~fak~~~~s~hn~~Yw~~~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i~~~~~p~~~~~~Ls~~e~~~e~ 330 (395) T Consensus 241 yeisnfak~g~~~~hN~~Yw~~~~~lGiG~gA~s~~~~----~r~~N~~~~~~Y~~~l~~g~~p~~~~~~ls~~d~~~e~ 316 (376) T PRK05628 241 YEVSNWARPGGECRHNLGYWRGGDWWGAGPGAHSHVGG----VRWWNVKHPAAYAERLAAGALPVAGREVLDAEDRHTER 316 (376) T ss_pred EEEHHHCCCCHHHHHHHCCCCCCCEEEECCCCCCCCCC----EEEEECCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHH T ss_conf 76203218953664253103389769973773101587----57880599999999997799970234458999999999 Q ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHHHC Q ss_conf 9996562379988899988389964999999998799498559899995675898999999861 Q gi|254780628|r 331 LMMGLRLREGISVKDWEMLAGRNLDIECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLA 394 (395) Q Consensus 331 l~~~LR~~~Gid~~~~~~~fg~~~~~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~l~ 394 (395) T Consensus 317 l~~~LRl~~Gi~~~~~~~~~-----~~~l~~l~~~Gll~~~d~~~l~LT~~G~ll~d~v~~~ll 375 (376) T PRK05628 317 VMLGLRLRQGLPLALLDAAE-----RAAAARLVADGLLEAADGGRLVLTDRGRLLADAVVRDLL 375 (376) T ss_pred HHHHHHHHCCCCHHHHCHHH-----HHHHHHHHHCCCEEEECCCEEEECHHHHHHHHHHHHHHC T ss_conf 99868864799979958667-----999999997699898249999999657369999999977 |
|
>PRK05799 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
---|
Probab=100.00 E-value=0 Score=748.54 Aligned_cols=370 Identities=33% Similarity=0.609 Sum_probs=349.7 Q ss_pred CCCEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHH Q ss_conf 88549999406511837657730245788662889999999999999876189505899962888887899999999976 Q gi|254780628|r 16 SNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDG 95 (395) Q Consensus 16 ~~~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~ 95 (395) T Consensus 1 mk~l~LYiHiPFC~~~C~yC~f~~~~~~~~-~~~~Y~~~L~~Ei~~~---~~~~~i~tiy~GGGTPs~l~~~~l~~l~~~ 76 (374) T PRK05799 1 MKEISLYIHIPFCKQKCLYCDFPSYSGKED-LMMEYIKALSKEIVNK---TKNKKIKSIFIGGGTPSYLSLEALEILLKT 76 (374) T ss_pred CCEEEEEEEECCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHHHHHH---CCCCCEEEEEECCCCCCCCCHHHHHHHHHH T ss_conf 956799999489998589997947488700-6999999999999976---579815499979965022999999999999 Q ss_pred HHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC-CCCCCCC Q ss_conf 640476444332113321041002347766303454114323433201345542244313478999986302-4443332 Q gi|254780628|r 96 IAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI-FPRMSFD 174 (395) Q Consensus 96 i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~-~~~v~iD 174 (395) T Consensus 77 i~~-~~~~~~~E~TiE~nP~~~~~~~l~~l~~~GvNRiSiGVQSf~~~~l~~lgR~h~~~~~~~ai~~~~~~gf~niniD 155 (374) T PRK05799 77 IKK-LNKKENLEFTVEGNPGTFTEEKLKILKSMGVNRISIGLQAWQNSLLKTLGRIHTFEEFLENYKLARKLGFNNINVD 155 (374) T ss_pred HHH-CCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEE T ss_conf 985-6888784589985667789999999997199758885335889999984799989999999999997599746688 Q ss_pred CCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 10002585432211127887531800123464688259600014544980211035678899986557887096242367 Q gi|254780628|r 175 LIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEIS 254 (395) Q Consensus 175 li~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~Yeis 254 (395) T Consensus 156 LIyGlPgQt~~~~~~~l~~~~~l~p~hiS~Y~L~i~~~t~~~~~~~~~~~~~p~~~~~~~my~~~~~~L~~~Gy~~yeis 235 (374) T PRK05799 156 LMFGLPNQTLEDWKETLEKVVELSPEHISCYSLIIEEGTPFYNLYENGKLKLPKEEEERKMYHYTIEFLKEKGYHQYEIS 235 (374) T ss_pred EECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECC T ss_conf 54489888789999999999841725013654205788679988751888999999999999999999984799767646 Q ss_pred CHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHH Q ss_conf 43431011013321124441232043200115788615786542470257787753896333224549999899999996 Q gi|254780628|r 255 NHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEFLMMG 334 (395) Q Consensus 255 ~fak~~~~s~hn~~Yw~~~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i~~~~~p~~~~~~Ls~~e~~~e~l~~~ 334 (395) T Consensus 236 ~fak~~~~~~hn~~yw~~~~ylGlG~gA~S~~~~~----r~~N~~~l~~Y~~~i~~~~~p~~~~~~ls~~~~~~e~i~~~ 311 (374) T PRK05799 236 NFAKKGKECRHNLVYWDLDEYIGCGAGAHSYVNGK----RYKNISNIEKYIKEINENNSAVEEIHKNSKKDNMEEFMFMG 311 (374) T ss_pred CCCCCCHHHHCCHHCCCCCEEEEECCCCEECCCCE----EEECCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHH T ss_conf 55788756513200205861698778731404972----68706899999999976999501444589868999999998 Q ss_pred HHHCCCCCHHHHHHHHCCCHHHHH---HHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHHHCC Q ss_conf 562379988899988389964999---9999987994985598999956758989999998619 Q gi|254780628|r 335 LRLREGISVKDWEMLAGRNLDIEC---ERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLAV 395 (395) Q Consensus 335 LR~~~Gid~~~~~~~fg~~~~~~~---~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~l~i 395 (395) T Consensus 312 Lr~~~Gi~~~~~~~~fg~~~~~~~~~~l~~l~~~Gll~-~~~~~i~lT~~G~~~~d~i~~~fl~ 374 (374) T PRK05799 312 LRKIKGICIEDFKKRFGKNIYEVYGEVINKYIKEGLLI-EKEGRIYLSERGIEISNSIMSDFLL 374 (374) T ss_pred HHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCEE-ECCCEEEECHHHHHHHHHHHHHHHC T ss_conf 87428989999999989299999999999999759989-8099999997789999999999849 |
|
>PRK07379 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
---|
Probab=100.00 E-value=0 Score=749.54 Aligned_cols=375 Identities=32% Similarity=0.537 Sum_probs=345.2 Q ss_pred CCCCCCEEEEEECCCCCCCCCCCCCEEEECCCC------CCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCH Q ss_conf 889885499994065118376577302457886------62889999999999999876189505899962888887899 Q gi|254780628|r 13 GQGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYK------VGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEP 86 (395) Q Consensus 13 ~~~~~~l~lYihiPFC~~~C~yC~f~~~~~~~~------~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~ 86 (395) T Consensus 5 ~~~~~PlslYiHIPFC~~~C~YCdF~~~v~~~~~~~~~~~~~~~Y~~~L~~Ei~~~~--~~~~~i~tiy~GGGTPSlL~~ 82 (399) T PRK07379 5 GFILLPTSAYLHIPFCRRRCFYCDFPISVVGDRQRGGTSGLIEEYVEVLCQEIAITP--SLGQPLQTVFFGGGTPSLLPV 82 (399) T ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH--CCCCCEEEEEECCCHHHHCCH T ss_conf 857561248886500669288999975176666665405799999999999997314--159962189969955674899 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHC Q ss_conf 99999997664047644433211332104100234776630345411432343320134554224431347899998630 Q gi|254780628|r 87 QNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARN 166 (395) Q Consensus 87 ~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~ 166 (395) T Consensus 83 ~~l~~ll~~l~~~f~~~~~~EiTiE~nP~~~~~~~l~~l~~~GvNRiSiGvQSf~~~~L~~lgR~h~~~~~~~ai~~~~~ 162 (399) T PRK07379 83 EQLERILLTLDQRFGIAPDAEISLEIDPGTFDLEQLQGYRSLGVNRVSLGVQAFQDELLALCGRSHRVKDIYQAVADIHQ 162 (399) T ss_pred HHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHH T ss_conf 99999999999868999885799984589899999999985698858897023868899984899999999999999997 Q ss_pred C-CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 2-444333210002585432211127887531800123464688259600014544980211035678899986557887 Q gi|254780628|r 167 I-FPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSA 245 (395) Q Consensus 167 ~-~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~ 245 (395) T Consensus 163 ~gf~niniDLIyGlPgQt~~~~~~~l~~~~~l~p~hiS~Y~L~~e~~T~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~ 242 (399) T PRK07379 163 AGIENFSLDLISGLPHQTLEDWQASLEAAIAINPTHLSCYDLVLEPVTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQ 242 (399) T ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 69975545533078998899999999999733888078888896389779998605888999989999999999999986 Q ss_pred CCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCC--CCCEEECCH Q ss_conf 096242367434310110133211244412320432001157886157865424702577877538963--332245499 Q gi|254780628|r 246 HGLHAYEISNHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHA--VVEKEFLSS 323 (395) Q Consensus 246 ~GY~~Yeis~fak~~~~s~hn~~Yw~~~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i~~~~~p--~~~~~~Ls~ 323 (395) T Consensus 243 ~Gy~~yeisnfak~g~~srHN~~YW~~~~ylG~G~gA~s~~~~~----r~~n~~~~~~Y~~~i~~~~~~~~~~~~~~l~~ 318 (399) T PRK07379 243 AGYEHYEISNYARPGYQCRHNRVYWENRPYYGFGMGAASYVQGQ----RFTRPRTRKEYYQWVEQLIANGGVIDGEPSSP 318 (399) T ss_pred CCCCEEEECCCCCCCCHHCCCCCEECCCCEEEEECCCCCCCCCC----EEECCCCHHHHHHHHHHHHCCCCCCCCCCCCH T ss_conf 89887874000478742205621586998199804621678992----57735888889999997645788543566998 Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHH---HHHHHHCCCEEEEECCEEEECH-HHHHHHHHHHHHHC Q ss_conf 99899999996562379988899988389964999---9999987994985598999956-75898999999861 Q gi|254780628|r 324 EQQADEFLMMGLRLREGISVKDWEMLAGRNLDIEC---ERNLQRQGFIERVQFSRLRCTQ-RGMTMLDSVIANLA 394 (395) Q Consensus 324 ~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~~~~~---~~~L~~~Gli~~~~~~~l~lT~-~G~~~~d~I~~~l~ 394 (395) T Consensus 319 ~~~~~E~lmlgLRl~~Gid~~~~~~~fg~~~~~~~~~~l~~l~~~Gll~-~~~~~i~LT~p~G~l~~n~I~~~l~ 392 (399) T PRK07379 319 EDVLLETLMLGLRLAEGVDLSALTQRFGQEIVEKILQCLQPYFQQGWVE-LTGGRLRLTDPEGFLFSNTVLASLF 392 (399) T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCEE-EECCEEEEECCCCEEEHHHHHHHHH T ss_conf 7999999999887437989999999989678999999999999679889-9799999948783542989999999 |
|
>PRK08898 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
---|
Probab=100.00 E-value=0 Score=742.16 Aligned_cols=375 Identities=34% Similarity=0.628 Sum_probs=349.5 Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCEEEECCCCC-CHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHH Q ss_conf 898854999940651183765773024578866-2889999999999999876189505899962888887899999999 Q gi|254780628|r 14 QGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKV-GQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALI 92 (395) Q Consensus 14 ~~~~~l~lYihiPFC~~~C~yC~f~~~~~~~~~-~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~l 92 (395) T Consensus 15 ~~~~PlslYiHIPFC~~~C~YC~f~s~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~~~tiy~GGGTPs~L~~~~l~~l 94 (393) T PRK08898 15 TSLPPLSLYVHFPWCVRKCPYCDFNSHEWKGGGIPEAAYLDALRADLEQALPLVWGRQVHTVFIGGGTPSLLSAAGLDRL 94 (393) T ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHCCHHHHHHH T ss_conf 78997289987178716099998814227878867999999999999975777069867799976842463899999999 Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCC Q ss_conf 97664047644433211332104100234776630345411432343320134554224431347899998630244433 Q gi|254780628|r 93 LDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMS 172 (395) Q Consensus 93 l~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~ 172 (395) T Consensus 95 ~~~l~~~f~~~~~~E~tiE~nP~~~~~~~l~~l~~~GvnRiSlGVQsf~~~~l~~lgR~h~~~~~~~~i~~~~~~f~~in 174 (393) T PRK08898 95 LSDVRALLPLDPDAEITLEANPGTFEAEKFAQFRASGVNRLSIGIQSFNDAHLKALGRIHDGAEARAAIEIAAKHFDNFN 174 (393) T ss_pred HHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCC T ss_conf 99999858976573168873625060999999985498648995202899999981899999999999999997374667 Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 32100025854322111278875318001234646882596000145449802110356788999865578870962423 Q gi|254780628|r 173 FDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYE 252 (395) Q Consensus 173 iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~Ye 252 (395) T Consensus 175 iDLiyGlP~Qt~~~~~~~l~~~~~l~p~hiS~Y~L~iep~T~~~~~~----~~lP~~d~~~~m~~~~~~~L~~~GY~~ye 250 (393) T PRK08898 175 LDLMYALPNQTLDECRADVETALAFGPPHLSLYHLTLEPNTLFAKFP----PALPDDDASADMQDWIHARLAAAGYAHYE 250 (393) T ss_pred CHHHHCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCHHHHCC----CCCCCHHHHHHHHHHHHHHHHHCCCCEEE T ss_conf 28983598898999999999986249995898777764897332157----67959899999999999999976998287 Q ss_pred CCCHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHHH Q ss_conf 67434310110133211244412320432001157886157865424702577877538963332245499998999999 Q gi|254780628|r 253 ISNHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEFLM 332 (395) Q Consensus 253 is~fak~~~~s~hn~~Yw~~~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i~~~~~p~~~~~~Ls~~e~~~e~l~ 332 (395) T Consensus 251 isnFAkpg~~~rhN~~YW~~~dylGlG~gA~s~ls~~~~~~r~~~~~~~~~Y~~~~~~g~-~~~~~~~l~~~d~~~e~i~ 329 (393) T PRK08898 251 TSAYAKPGRQCRHNLNYWQFGDYLGIGAGAHGKLSFPDRILRQARYKHPATYLEQAKAGT-AVQEEREVGARDLPFEFML 329 (393) T ss_pred ECHHHCCCCHHHHHHCCCCCCCEEEECCCCCEECCCCCCEEEEEECCCHHHHHHHHHCCC-CCCCCEECCHHHHHHHHHH T ss_conf 254234784533333505699818985680110316786278756389999999986699-8431127899999999999 Q ss_pred HHHHHCCCCCHHHHHHHHCCCHHH--HHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHHHC Q ss_conf 965623799888999883899649--99999998799498559899995675898999999861 Q gi|254780628|r 333 MGLRLREGISVKDWEMLAGRNLDI--ECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLA 394 (395) Q Consensus 333 ~~LR~~~Gid~~~~~~~fg~~~~~--~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~l~ 394 (395) T Consensus 330 ~~LRl~~Gv~~~~f~~~~g~~l~~~~~~l~~l~~~GLl~-~~~~~i~lT~~G~~~~n~I~~~Fl 392 (393) T PRK08898 330 NALRLTDGVPASSFQERTGLPLAAIEPQLAAAEQRGLLE-RDPTRIRPTPLGQRFLNDLQELFL 392 (393) T ss_pred HHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE-EECCEEEECHHHHHHHHHHHHHHC T ss_conf 989861898899999998969999999999999789899-809999999758999999999970 |
|
>PRK08807 consensus | Back alignment and domain information |
---|
Probab=100.00 E-value=0 Score=730.74 Aligned_cols=378 Identities=37% Similarity=0.650 Sum_probs=344.2 Q ss_pred HCCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHH Q ss_conf 42889885499994065118376577302457886628899999999999998761895058999628888878999999 Q gi|254780628|r 11 MTGQGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIA 90 (395) Q Consensus 11 ~~~~~~~~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~ 90 (395) T Consensus 1 ~~~~~p~pl~lYiHIPFC~~~C~YCdf~s~~~~~~~~~~~y~~~l~~ei~~~~~~~~~~~~~tiy~GGGTPs~L~~~~l~ 80 (385) T PRK08807 1 MPQLIPPPLSLYVHLPWCVRKCPYCDFNSHAAKGALPFDAYVDALIRDLDADLPLVWGRVVHSVFFGGGTPSLFPPEAID 80 (385) T ss_pred CCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHCCHHHHH T ss_conf 99889985699997088888589998944107898769999999999999744550698443899799555737999999 Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC-CC Q ss_conf 99976640476444332113321041002347766303454114323433201345542244313478999986302-44 Q gi|254780628|r 91 LILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI-FP 169 (395) Q Consensus 91 ~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~-~~ 169 (395) T Consensus 81 ~ll~~i~~~~~~~~~~E~TiE~nP~~~~~~~l~~l~~~GvnRlSlGvQsf~~~~L~~lgR~h~~~~~~~ai~~~r~~gf~ 160 (385) T PRK08807 81 RFLQAAAARLRFAPNLEITLETNPGTAEHGRFDHYRAAGVNRLSFGVQSFDDVALQRLGRIHDSAEAERAIKLAQDAGYD 160 (385) T ss_pred HHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCC T ss_conf 99999999669776716999527210108899999856987588741558999999848999899999999999974997 Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 43332100025854322111278875318001234646882596000145449802110356788999865578870962 Q gi|254780628|r 170 RMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLH 249 (395) Q Consensus 170 ~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~ 249 (395) T Consensus 161 nin~DLiyglP~Qt~~~~~~~l~~~~~l~p~hiS~Y~L~ie~~t~~~~~~~~~---lp~~d~~~~~~~~~~~~L~~~Gy~ 237 (385) T PRK08807 161 NFNIDLMYALPEQTLLQAEHDLERAFALQPTHLSHYQLTLEPNTVFFARPPQG---IPDDDAAWDMQEHCQRLLAEAGYA 237 (385) T ss_pred CCCCCEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCHHHHCCCCC---CCCHHHHHHHHHHHHHHHHHCCCC T ss_conf 31301032699998999999999985559984789888851783575454225---996789999999999999973986 Q ss_pred CCCCCCHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCE--EEEEEECCCHHHHHHHHCCCCC-CCCEEECCHHHH Q ss_conf 4236743431011013321124441232043200115788615--7865424702577877538963-332245499998 Q gi|254780628|r 250 AYEISNHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHR--VAISIEKHPESWLKMVRKNGHA-VVEKEFLSSEQQ 326 (395) Q Consensus 250 ~Yeis~fak~~~~s~hn~~Yw~~~d~iG~G~GA~S~l~~~~~~--~~~~~~~~~~~Y~~~i~~~~~p-~~~~~~Ls~~e~ 326 (395) T Consensus 238 ~yeisnfak~g~~~~Hn~~yw~~~dylG~G~gA~g~~~~~~~~~~~r~~~~~~~~~yl~~--~~~~~~~~~~e~~~~~~~ 315 (385) T PRK08807 238 QYEVSAYARPGRQCAHNLNYWRFGDYLGIGAGAHGKISSGAEQHVLRRWKHKHPQSYLAS--AGTAAAIGGDEIVPTARL 315 (385) T ss_pred EECCCCCCCCCCCCCHHHHHCCCCCEEEECCCCCEECCCCCCCCEEEEHHCCCHHHHHHH--CCCCCCCCCEEECCHHHH T ss_conf 013420058985141677432799879976880323378776301441111787999986--435687675351788788 Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCHHH--HHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHHHC Q ss_conf 999999965623799888999883899649--99999998799498559899995675898999999861 Q gi|254780628|r 327 ADEFLMMGLRLREGISVKDWEMLAGRNLDI--ECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLA 394 (395) Q Consensus 327 ~~e~l~~~LR~~~Gid~~~~~~~fg~~~~~--~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~l~ 394 (395) T Consensus 316 ~~e~~~~~LRl~~Gi~~~~f~~~~G~~~~~~~~~l~~~~~~Gll~-~~~~ri~LT~~G~~~~n~V~~~Fl 384 (385) T PRK08807 316 PFEYMLNLLRLHEGFRLSDFEASTGLAAEVIEAPLARAVAQGWLR-RQDGRVVPTELGRRFTNDVVELFL 384 (385) T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE-EECCEEEECHHHHHHHHHHHHHHC T ss_conf 999999979985798989999997969999999999999789989-749999999638899999999971 |
|
>PRK05660 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
---|
Probab=100.00 E-value=0 Score=730.87 Aligned_cols=369 Identities=35% Similarity=0.609 Sum_probs=340.4 Q ss_pred CCCEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHH Q ss_conf 88549999406511837657730245788662889999999999999876189505899962888887899999999976 Q gi|254780628|r 16 SNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDG 95 (395) Q Consensus 16 ~~~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~ 95 (395) T Consensus 4 ~~PlsLYiHiPFC~~~C~YC~f~~~~~~~~~~~~~Y~~aL~~ei~~~~~~~~~~~i~tiy~GGGTPs~L~~~~l~~l~~~ 83 (378) T PRK05660 4 LPPLSLYIHIPWCVQKCPYCDFNSHALKGEVPEDEYVDHLLADLDADLPLVQGREVHSIFIGGGTPSLFSAEAIQRLLDG 83 (378) T ss_pred CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHCCHHHHHHHHHH T ss_conf 98628999727898769999696504888776999999999999998776179757699978953330899999999999 Q ss_pred HHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC-CCCCCCC Q ss_conf 640476444332113321041002347766303454114323433201345542244313478999986302-4443332 Q gi|254780628|r 96 IAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI-FPRMSFD 174 (395) Q Consensus 96 i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~-~~~v~iD 174 (395) T Consensus 84 i~~~f~~~~~~EiTiE~nP~~~~~~~l~~l~~~GvnRiSiGVQsf~~~~l~~lgR~h~~~~~~~ai~~~r~~gf~~iniD 163 (378) T PRK05660 84 VRARLPFAPDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKLKRLGRIHGPDEAKRAAKLAQGAGLRSFNLD 163 (378) T ss_pred HHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEC T ss_conf 99857987771489845705330889999998098759996143789999982799999999999999997699606542 Q ss_pred CCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 10002585432211127887531800123464688259600014544980211035678899986557887096242367 Q gi|254780628|r 175 LIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEIS 254 (395) Q Consensus 175 li~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~Yeis 254 (395) T Consensus 164 LiyGlP~Qt~~~~~~~l~~~~~l~p~his~Y~L~~e~~T~~~~~~----~~lp~~~~~~~my~~~~~~L~~~Gy~~yeis 239 (378) T PRK05660 164 LMHGLPDQSLEEALDDLRQAIALNPPHLSWYQLTIEPNTVFGSRP----PVLPDDDALWDIFEQGHQLLTAAGYQQYETS 239 (378) T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHHCC----CCCCCHHHHHHHHHHHHHHHHHCCCCEEEEC T ss_conf 326899988999999999986449880578888865897376467----6699858999999999999997799878612 Q ss_pred CHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCC-CEEEEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHH Q ss_conf 434310110133211244412320432001157886-1578654247025778775389633322454999989999999 Q gi|254780628|r 255 NHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGS-HRVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEFLMM 333 (395) Q Consensus 255 ~fak~~~~s~hn~~Yw~~~d~iG~G~GA~S~l~~~~-~~~~~~~~~~~~~Y~~~i~~~~~p~~~~~~Ls~~e~~~e~l~~ 333 (395) T Consensus 240 nFAk~g~~~~HN~~YW~~~dylGiG~gA~g~~s~~~g~~~r~~~~~~~~~yl~~-----~~~~~~~~l~~~~~~~e~~m~ 314 (378) T PRK05660 240 AYAKPGYQCQHNLNYWRFGDYLGIGCGAHGKLTFPDGRILRTWKTKHPRGYLQG-----RYLEGQRDVPAADLPFEFFMN 314 (378) T ss_pred CCCCCCHHHHHHHCCCCCCCEEEECCCCCEEECCCCCCEEEEECCCCHHHHHHC-----CCCCCCCCCCHHHHHHHHHHH T ss_conf 777887022201110579980898158141001578616874123689999705-----543565358886899999999 Q ss_pred HHHHCCCCCHHHHHHHHCCCHHH--HHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHHHC Q ss_conf 65623799888999883899649--99999998799498559899995675898999999861 Q gi|254780628|r 334 GLRLREGISVKDWEMLAGRNLDI--ECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLA 394 (395) Q Consensus 334 ~LR~~~Gid~~~~~~~fg~~~~~--~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~l~ 394 (395) T Consensus 315 ~LRl~~Gv~~~~f~~~~g~~~~~~~~~l~~l~~~Gll~-~~~~~l~lT~~G~l~~n~I~~~Fl 376 (378) T PRK05660 315 RFRLLEAAPRAEFEAYTGLPESVIRPQLDEAIAQGYLT-ETEDYWQITEHGKLFLNDLLELFL 376 (378) T ss_pred HHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE-EECCEEEECHHHHHHHHHHHHHHH T ss_conf 89987798999999997979999999999999799889-839999999778999999999983 |
|
>PRK08949 consensus | Back alignment and domain information |
---|
Probab=100.00 E-value=0 Score=725.11 Aligned_cols=369 Identities=35% Similarity=0.618 Sum_probs=339.5 Q ss_pred CCCEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHH Q ss_conf 88549999406511837657730245788662889999999999999876189505899962888887899999999976 Q gi|254780628|r 16 SNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDG 95 (395) Q Consensus 16 ~~~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~ 95 (395) T Consensus 4 ~~PlslYiHIPFC~~~C~YCdf~s~~~~~~~~~~~Y~~aL~~El~~~~~~~~~~~~~tiy~GGGTPs~L~~~~l~~ll~~ 83 (378) T PRK08949 4 LPPLSLYIHIPWCVQKCPYCDFNSHALKGEVPHQDYVQHLLADLDADVAYAQGRELHTIFIGGGTPSLLSAEAMQTLLDG 83 (378) T ss_pred CCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCHHHHCCHHHHHHHHHH T ss_conf 98708999808876718999998632888875999999999999986565079768799972823200799999999999 Q ss_pred HHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC-CCCCCCC Q ss_conf 640476444332113321041002347766303454114323433201345542244313478999986302-4443332 Q gi|254780628|r 96 IAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI-FPRMSFD 174 (395) Q Consensus 96 i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~-~~~v~iD 174 (395) T Consensus 84 i~~~f~~~~~~EiTiE~nP~~~~~~~l~~l~~~GvNRiSlGvQsf~~~~L~~lgR~h~~~~~~~a~~~~~~~gf~~iniD 163 (378) T PRK08949 84 VRARLPFAADAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKLKRLGRIHGPQEAKRAAKLASGLGLRSFNLD 163 (378) T ss_pred HHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEC T ss_conf 99867987670589955825231889999997198669995034898999983799999999999999986599625023 Q ss_pred CCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 10002585432211127887531800123464688259600014544980211035678899986557887096242367 Q gi|254780628|r 175 LIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEIS 254 (395) Q Consensus 175 li~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~Yeis 254 (395) T Consensus 164 LiyglP~Qt~~~~~~~l~~~~~l~p~hiS~Y~L~ie~~t~~~~~~----~~lp~~~~~~~~y~~~~~~L~~~Gy~~YEis 239 (378) T PRK08949 164 LMHGLPDQSLEEALDDLRQAIALNPPHLSWYQLTIEPNTLFGSRP----PVLPDDDALWDIFEQGHQLLTAAGYQQYETS 239 (378) T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCHHHHCC----CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEE T ss_conf 236899989999999999996669983788746864897376467----7899759999999999999997799816654 Q ss_pred CHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCC-CEEEEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHH Q ss_conf 434310110133211244412320432001157886-1578654247025778775389633322454999989999999 Q gi|254780628|r 255 NHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGS-HRVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEFLMM 333 (395) Q Consensus 255 ~fak~~~~s~hn~~Yw~~~d~iG~G~GA~S~l~~~~-~~~~~~~~~~~~~Y~~~i~~~~~p~~~~~~Ls~~e~~~e~l~~ 333 (395) T Consensus 240 nfak~g~~~~HN~~YW~~~dylG~G~gA~g~ls~~~g~~~R~~~~~~~~~yl~~-----~~~~~~~~l~~~~~~~E~~m~ 314 (378) T PRK08949 240 AYAKPGYQCQHNLNYWRFGDYLGIGCGAHGKLTFPDGRILRTTKTKHPRGYMQG-----RYLDSQRDVEAADRPFEFFMN 314 (378) T ss_pred CCCCCCCCCCCCHHHCCCCCEEEECCCCCCCCCCCCCCEEEHHCCCCHHHHHCC-----CCCCCCCCCCHHHHHHHHHHH T ss_conf 123688754541402689970898168050120567857640023587989706-----754420348876779999998 Q ss_pred HHHHCCCCCHHHHHHHHCCCHHH--HHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHHHC Q ss_conf 65623799888999883899649--99999998799498559899995675898999999861 Q gi|254780628|r 334 GLRLREGISVKDWEMLAGRNLDI--ECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLA 394 (395) Q Consensus 334 ~LR~~~Gid~~~~~~~fg~~~~~--~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~l~ 394 (395) T Consensus 315 ~LRl~eGv~~~~f~~~~G~~~~~~~~~l~~l~~~Gll~-~~~~~l~lT~~G~l~~n~I~~~Fl 376 (378) T PRK08949 315 RFRLLEAAPRAEFEDYTGLTESVIRPQIDEAIAQGYLT-ETEDYWQITEHGKLFLNSLLELFL 376 (378) T ss_pred HHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE-ECCCEEEECHHHHHHHHHHHHHHH T ss_conf 58976698899999997989999999999999789839-629999999878999999999970 |
|
>PRK08208 coproporphyrinogen III oxidase; Validated | Back alignment and domain information |
---|
Probab=100.00 E-value=0 Score=724.65 Aligned_cols=383 Identities=22% Similarity=0.354 Sum_probs=346.3 Q ss_pred HHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCC Q ss_conf 78998842889885499994065118376577302457886628899999999999998761895058999628888878 Q gi|254780628|r 5 SAYENNMTGQGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLI 84 (395) Q Consensus 5 ~~~~~~~~~~~~~~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l 84 (395) T Consensus 32 ~~~~~~~~~~~~~~LsLYiHiPFC~~~C~YC~f~~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~~~tiy~GGGTPS~L 111 (436) T PRK08208 32 VSLSEVWPREYEDALHLYIHIPFCESRCGFCNLFTCTGADNEFIDSYLDALIRQARQVALALGGVHFASFAVGGGTPTLL 111 (436) T ss_pred HHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHCC T ss_conf 76999984399997499987044079588999837668983389999999999999987663898356899679432219 Q ss_pred CHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHH Q ss_conf 9999999997664047644-433211332104100234776630345411432343320134554224431347899998 Q gi|254780628|r 85 EPQNIALILDGIAKNWTVS-SNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHL 163 (395) Q Consensus 85 ~~~~l~~ll~~i~~~~~~~-~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~ 163 (395) T Consensus 112 ~~~~l~~ll~~l~~~f~~~~~~~EiTiE~nP~~~~~~~l~~l~~~GvNRiSlGVQsf~~~~L~~lgR~h~~~~~~~ai~~ 191 (436) T PRK08208 112 NIAQLEKLFFSVFDVLGVDLWNIPKSVETSPTTTTAEKLALLNAFGVNRVSIGVQSFHDSELHALHRRQNAASVHQALEL 191 (436) T ss_pred CHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHH T ss_conf 99999999999998589984671599986636360999999997398727874144898999984688999999999999 Q ss_pred HHCC-CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 6302-444333210002585432211127887531800123464688259600014544980211035678899986557 Q gi|254780628|r 164 ARNI-FPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSI 242 (395) Q Consensus 164 ~~~~-~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~ 242 (395) T Consensus 192 ~r~~gf~niniDLIyGlPgQt~~~~~~~l~~~l~l~p~HIS~Y~L~iep~T~l~~~~------~~~~d~~~~my~~a~~~ 265 (436) T PRK08208 192 IRAAHFPSLNIDLIYGIPGQTHASFMESLHQALVYRPEELFLYPLYVRPLTGLGRRG------TAWDDNMHSLYVLARDL 265 (436) T ss_pred HHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEECCCCEECCCCCCCCCC------CCCCHHHHHHHHHHHHH T ss_conf 998199857552443699999999999999998279898987633047898301247------98937999999999999 Q ss_pred HHHCCCCCCCCCCHHHHHHHHCCCCCCC-CCCCEEECCCCCCCCCCCCCCEEEEE-EECCCHHHHHHH--HCCCCCCCCE Q ss_conf 8870962423674343101101332112-44412320432001157886157865-424702577877--5389633322 Q gi|254780628|r 243 TSAHGLHAYEISNHSFLGAESLHNLNYW-RYGDYIGIGPGAHSRVKVGSHRVAIS-IEKHPESWLKMV--RKNGHAVVEK 318 (395) Q Consensus 243 L~~~GY~~Yeis~fak~~~~s~hn~~Yw-~~~d~iG~G~GA~S~l~~~~~~~~~~-~~~~~~~Y~~~i--~~~~~p~~~~ 318 (395) T Consensus 266 L~~~Gy~~YeisnFak~~~~~~hn~~y~~~~~~ylGlG~gA~S~~~~~r~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~g 345 (436) T PRK08208 266 LLNAGYTQTSMRRFVRNDAPSAAAPSYSCQFEGMLGLGAGARSYLGNLHYSSPYAVNQQTIRSIIQNYIDRPDFTVANHG 345 (436) T ss_pred HHHCCCHHHHHHHHCCCCHHHHHCCCCCCCCCCEEEEECCEEEECCCCCCCCHHHHCCCHHHHHHHHHHHCCCCCCCCCC T ss_conf 99769443348662089836664602536899889994767998898554635754221189999999855786520002 Q ss_pred EECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHH--HHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHHHC Q ss_conf 4549999899999996562379988899988389964999--999998799498559899995675898999999861 Q gi|254780628|r 319 EFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLDIEC--ERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLA 394 (395) Q Consensus 319 ~~Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~~~~~--~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~l~ 394 (395) T Consensus 346 ~~Ls~~d~~~e~ii~~Lr~~~Gvd~~~f~~~fg~~~~~~~~~l~~l~~~GLl~-~~~~~l~LT~~G~~~~d~I~~~F~ 422 (436) T PRK08208 346 YLLSPDEMKRRFIIKSLLFWQGLDLSDYRQRFGSDALRDFPELEEFIDQGWCY-QNGSRVRLTETGLAYSDCLGPVFI 422 (436) T ss_pred EECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE-EECCEEEECHHHHHHHHHHHHHHC T ss_conf 00798899999999999986898999999998959999999999999788889-709999999758899999999876 |
|
>PRK06294 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
---|
Probab=100.00 E-value=0 Score=719.32 Aligned_cols=367 Identities=30% Similarity=0.513 Sum_probs=340.0 Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH-HHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHH Q ss_conf 8988549999406511837657730245788662889999999999-999876189505899962888887899999999 Q gi|254780628|r 14 QGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEM-QWMRQLTGPRSISSIFFGGGTPSLIEPQNIALI 92 (395) Q Consensus 14 ~~~~~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei-~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~l 92 (395) T Consensus 2 ~~~~PlsLYiHIPFC~~~C~yC~f~~~~~~~-~~~~~Y~~al~~e~~~~~~~~~~~~~~~tiy~GGGTPs~L~~~~L~~l 80 (374) T PRK06294 2 NGKTPLALYIHIPFCSKKCHYCSFYTIPYKE-ESVSLYCNAVIKEGLKKLAPLRCTHFIDTVFFGGGTPSLVPPDLIQDI 80 (374) T ss_pred CCCCEEEEEEECCCCCCCCCCCCCEEECCCC-CCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHCCHHHHHHH T ss_conf 8897448998627899879999881024882-339999999999999997643489817999978970163889999999 Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC-CCCC Q ss_conf 976640476444332113321041002347766303454114323433201345542244313478999986302-4443 Q gi|254780628|r 93 LDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI-FPRM 171 (395) Q Consensus 93 l~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~-~~~v 171 (395) T Consensus 81 l~~i~~~----~~~E~TiE~nP~~~~~~~l~~l~~~GinRlSlGVQsf~d~~l~~lgR~h~~~~~~~~i~~~~~~gf~~i 156 (374) T PRK06294 81 LKTLEAP----HATEITLEANPENLSFSYLRALAQTPINRISIGVQTFDDPLLKLLGRTHSSSAAIEAVLECYEHGFSNL 156 (374) T ss_pred HHHHCCC----CCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCE T ss_conf 9974016----884389985347699999999997298759897210767889873899999999999999997599743 Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 33210002585432211127887531800123464688259600014544980211035678899986557887096242 Q gi|254780628|r 172 SFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAY 251 (395) Q Consensus 172 ~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~Y 251 (395) T Consensus 157 niDLIyGlPgQt~~~~~~~l~~~~~l~p~hiS~Y~L~iep~t~~~~~~~~~~~~~p~~~~~~~~~~~~~~~L~~~Gy~~y 236 (374) T PRK06294 157 SIDLIYGLPTQSLSDFIMDLHQALTLPITHISLYNLTIDPHTSFYKHRKILLPSIADEDILAEMSLAAEELLTSQGFERY 236 (374) T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHH T ss_conf 32110478888889999999999734967455555576589658886133899998999999999999999997598301 Q ss_pred CCCCHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHH Q ss_conf 36743431011013321124441232043200115788615786542470257787753896333224549999899999 Q gi|254780628|r 252 EISNHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEFL 331 (395) Q Consensus 252 eis~fak~~~~s~hn~~Yw~~~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i~~~~~p~~~~~~Ls~~e~~~e~l 331 (395) T Consensus 237 eisnfak~~~~~~hn~~yw~~~~~lG~G~gA~s~~~~----~~~~N~~~~~~Y~~~i~~~~~~~~~~~~l~~~~~~~e~l 312 (374) T PRK06294 237 ELASYAKPQAYSKHNTYYWTDRPFLGLGVSASQYLHG----IRSKNLSRISHYLRAVRKNLPTQESMEELPPNERIKEAL 312 (374) T ss_pred HHHHHHCCCCCCCCCCCCCCCCCEEEEECCEEEECCC----EEEEECCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHH T ss_conf 1566635996030412345799759993692100798----169815999999999987999410444569858999999 Q ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHHHC Q ss_conf 996562379988899988389964999999998799498559899995675898999999861 Q gi|254780628|r 332 MMGLRLREGISVKDWEMLAGRNLDIECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLA 394 (395) Q Consensus 332 ~~~LR~~~Gid~~~~~~~fg~~~~~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~l~ 394 (395) T Consensus 313 ~~~Lrl~~gv~~~~f~~~~----~~~~l~~~~~~Gll~-~~~~~l~LT~~G~l~~d~I~~~ll 370 (374) T PRK06294 313 ALRLRLCQGIPIADFPQEL----ILELTMQPSIQGLFT-QNDQILSLNKQGRLFHDTIAEEIM 370 (374) T ss_pred HHHHHHCCCCCHHHHHHHH----HHHHHHHHHHCCCEE-EECCEEEECHHHHHHHHHHHHHHH T ss_conf 9829852898789966988----999999999889889-849999999426279999999985 |
|
>PRK13347 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
---|
Probab=100.00 E-value=0 Score=708.96 Aligned_cols=381 Identities=19% Similarity=0.355 Sum_probs=344.4 Q ss_pred HHHHHCC-CCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHH-CCCEEEEEEECCCCCCCC Q ss_conf 9988428-89885499994065118376577302457886628899999999999998761-895058999628888878 Q gi|254780628|r 7 YENNMTG-QGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLT-GPRSISSIFFGGGTPSLI 84 (395) Q Consensus 7 ~~~~~~~-~~~~~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~-~~~~~~~iy~GGGTPs~l 84 (395) T Consensus 38 ~~~~~~~~~~~~plsLYiHIPFC~~~C~YC~f~~~~~~~~~~~~~Yl~~L~~Ei~~~~~~~~~~~~v~ti~~GGGTPs~L 117 (453) T PRK13347 38 YREWLRQIPPEEPVSLYLHVPFCRSLCWFCGCNTIITQRDAPVEAYVAALIREIRLVAALLPQRRRVSQLHWGGGTPTIL 117 (453) T ss_pred HHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHC T ss_conf 99999835899986999852771680899989733778866799999999999999887627898078999788482859 Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHH Q ss_conf 99999999976640476444332113321041002347766303454114323433201345542244313478999986 Q gi|254780628|r 85 EPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLA 164 (395) Q Consensus 85 ~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~ 164 (395) T Consensus 118 ~~~~l~~ll~~l~~~f~~~~~~EitiE~nP~~~~~~~l~~l~~~GvNRlSlGVQsfd~~vl~~lgR~h~~~~~~~av~~a 197 (453) T PRK13347 118 NPDQFERLMAALRDAFDFAPEAEIAVEIDPRTVTAEMLQALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELL 197 (453) T ss_pred CHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHH T ss_conf 99999999999997589999966999867786899999999864986588713457878999825989999999999999 Q ss_pred HCC-CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 302-4443332100025854322111278875318001234646882596000145449802110356788999865578 Q gi|254780628|r 165 RNI-FPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSIT 243 (395) Q Consensus 165 ~~~-~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L 243 (395) T Consensus 198 r~~Gf~~iniDLIyGlP~QT~~~~~~tL~~~~~l~pdhiS~Y~l~~~p~~~~~qr-~i~~~~LP~~~~~~~m~~~a~~~L 276 (453) T PRK13347 198 RAAGFESINFDLIYGLPHQTVESFRETLDKVIALSPDRIAVFGYAHVPSRRKNQR-LIDEAALPDAEERLRQARAAADRL 276 (453) T ss_pred HHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHH-CCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 9818986555555248999899999999999831999788523202653235653-257678959999999999999999 Q ss_pred HHCCCCCCCCCCHHHHHHH----------HCCCCCCCC--CCCEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCC Q ss_conf 8709624236743431011----------013321124--4412320432001157886157865424702577877538 Q gi|254780628|r 244 SAHGLHAYEISNHSFLGAE----------SLHNLNYWR--YGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKN 311 (395) Q Consensus 244 ~~~GY~~Yeis~fak~~~~----------s~hn~~Yw~--~~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i~~~ 311 (395) T Consensus 277 ~~~GY~~y~i~~FAkp~del~~a~~~g~l~rn~~gY~~~~~~~~lGlG~sA~S~~~~~~----~~N~~~l~~Y~~~i~~g 352 (453) T PRK13347 277 LAAGYVPIGLDHFALPDDELAIAQREGRLHRNFQGYTTDRCETLIGFGASAISRFPGGY----VQNISSLKAYYRAIDAG 352 (453) T ss_pred HHCCCEEEECHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCEEECCCCC----EEEECCHHHHHHHHHCC T ss_conf 96793895143303896588888755875213335565789864863534257669963----35207999999999869 Q ss_pred CCCCCCEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHH-----HHHHHHHHCCCEEEEECCEEEECHHHHHHH Q ss_conf 963332245499998999999965623799888999883899649-----999999987994985598999956758989 Q gi|254780628|r 312 GHAVVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLDI-----ECERNLQRQGFIERVQFSRLRCTQRGMTML 386 (395) Q Consensus 312 ~~p~~~~~~Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~~~-----~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~ 386 (395) T Consensus 353 ~lpv~~g~~ls~~d~lr~~~i~~L~~~~~ld~~~~~~r~g~~~~~~~~~~~~l~~l~~~GLl~-~~~~~l~lT~~Gr~l~ 431 (453) T PRK13347 353 RLPIERGYALSDDDRLRRAIIERLMCNFPVDLAAIAARHGFFARYFADELARLEPLAADGLVT-IDGGGIRVTPEGRPLI 431 (453) T ss_pred CCCHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEE-EECCEEEECHHHHHHH T ss_conf 996130203788899999999999864795989999884998577889999999999789889-9899999997089999 Q ss_pred HHHHHHH Q ss_conf 9999986 Q gi|254780628|r 387 DSVIANL 393 (395) Q Consensus 387 d~I~~~l 393 (395) T Consensus 432 ~~Ia~~F 438 (453) T PRK13347 432 RAVAAAF 438 (453) T ss_pred HHHHHHH T ss_conf 9999999 |
|
>PRK09249 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
---|
Probab=100.00 E-value=0 Score=698.35 Aligned_cols=383 Identities=22% Similarity=0.390 Sum_probs=343.7 Q ss_pred HHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHC-CCEEEEEEECCCCC Q ss_conf 13789988428898854999940651183765773024578866288999999999999987618-95058999628888 Q gi|254780628|r 3 YLSAYENNMTGQGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTG-PRSISSIFFGGGTP 81 (395) Q Consensus 3 ~~~~~~~~~~~~~~~~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~-~~~~~~iy~GGGTP 81 (395) T Consensus 38 ~~~~l~~~~--~~~~plSLYiHiPFC~~~C~YC~~~~~~~~~~~~~~~Yl~~L~~Ei~~~~~~l~~~~~v~~i~~GGGTP 115 (456) T PRK09249 38 YLQALARSP--PEGSPLSLYVHIPFCRSLCYYCGCNKIITRDHEKADPYLDALEKEIALVAPLLPGGRKVSQLHWGGGTP 115 (456) T ss_pred HHHHHHHCC--CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCH T ss_conf 999998417--799955999851781682899998013578855799999999999999887617898367999789670 Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHH Q ss_conf 87899999999976640476444332113321041002347766303454114323433201345542244313478999 Q gi|254780628|r 82 SLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAI 161 (395) Q Consensus 82 s~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~ 161 (395) T Consensus 116 s~L~~~~l~~l~~~l~~~f~~~~~~EitiE~nP~~~~~~~l~~l~~~GvnRiSlGVQsfd~~vl~~igR~h~~~~~~~~i 195 (456) T PRK09249 116 TFLSPEQLTRLMALLREHFNFAPDAEISIEIDPRELDLEMLDALRELGFNRLSLGVQDFDPEVQKAINRIQPFELTFALV 195 (456) T ss_pred HHCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHH T ss_conf 64999999999999998668898835999843475879999999845975688605357879999852889999999999 Q ss_pred HHHHCC-CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHH Q ss_conf 986302-4443332100025854322111278875318001234646882596000145449802110356788999865 Q gi|254780628|r 162 HLARNI-FPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQ 240 (395) Q Consensus 162 ~~~~~~-~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~ 240 (395) T Consensus 196 ~~ar~~Gf~~in~DLIyGLP~QT~~~~~~tl~~~~~l~Pdhis~y~yah~P~~~-~~qr~i~~~~LP~~~~~~~m~~~a~ 274 (456) T PRK09249 196 EAARELGFTSINFDLIYGLPKQTPESFARTLEKVLELRPDRLAVFNYAHVPWLF-KAQRKIDEADLPSPEEKLEILQAAI 274 (456) T ss_pred HHHHHCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCHHH-HHHHHCCCCCCCCHHHHHHHHHHHH T ss_conf 999981997210488606998769999999999965599889950223472045-5653036567979999999999999 Q ss_pred HHHHHCCCCCCCCCCHHHHHHH----------HCCCCCCCC--CCCEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHH Q ss_conf 5788709624236743431011----------013321124--4412320432001157886157865424702577877 Q gi|254780628|r 241 SITSAHGLHAYEISNHSFLGAE----------SLHNLNYWR--YGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMV 308 (395) Q Consensus 241 e~L~~~GY~~Yeis~fak~~~~----------s~hn~~Yw~--~~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i 308 (395) T Consensus 275 ~~L~~aGY~~igidhFA~p~DeLa~A~~~g~l~RNfqGYt~~~~~~~lGlG~sA~S~~~~~----~~qN~~~l~~Y~~~i 350 (456) T PRK09249 275 ETLTEAGYQYIGMDHFALPDDELAIAQREGTLHRNFQGYTTDGDCDLLGLGVSAISRIGDG----YAQNAKDLKAYYAAV 350 (456) T ss_pred HHHHHCCCEEECCCCCCCCCCHHHHHHHCCCEEECCCCCCCCCCCCEEEECCCCCEECCCC----EEECCCCHHHHHHHH T ss_conf 9999779858535644478847999986596456562555799985597446431005995----577576999999998 Q ss_pred HCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHH------HHHHHHCCCEEEEECCEEEECHHH Q ss_conf 53896333224549999899999996562379988899988389964999------999998799498559899995675 Q gi|254780628|r 309 RKNGHAVVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLDIEC------ERNLQRQGFIERVQFSRLRCTQRG 382 (395) Q Consensus 309 ~~~~~p~~~~~~Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~~~~~------~~~L~~~Gli~~~~~~~l~lT~~G 382 (395) T Consensus 351 ~~g~lpi~rg~~Ls~eD~lr~~vi~~Lmc~~~ld~~~~~~~~g~~~~~~f~~~~~~L~~l~~~GLl~-~~~~~l~lT~~G 429 (456) T PRK09249 351 DEGRLPTARGVALTADDRLRRDVIEQLMCNFELDFAAIEAAFGIDFAEYFAEELELLAPLEDDGLVE-LDEDGITVTPTG 429 (456) T ss_pred HCCCCCHHHCEECCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEE-EECCEEEECHHH T ss_conf 7699955730208899999999999999848938899999969899999999999999999799899-989999999406 Q ss_pred HHHHHHHHHHH Q ss_conf 89899999986 Q gi|254780628|r 383 MTMLDSVIANL 393 (395) Q Consensus 383 ~~~~d~I~~~l 393 (395) T Consensus 430 r~l~r~Ia~~F 440 (456) T PRK09249 430 RLLVRNIAMAF 440 (456) T ss_pred HHHHHHHHHHH T ss_conf 79999999999 |
|
>PRK09058 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
---|
Probab=100.00 E-value=0 Score=695.82 Aligned_cols=375 Identities=22% Similarity=0.342 Sum_probs=341.1 Q ss_pred CCCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHH--HHCCCEEEEEEECCCCCCCCCHHHHH Q ss_conf 8898854999940651183765773024578866288999999999999987--61895058999628888878999999 Q gi|254780628|r 13 GQGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQ--LTGPRSISSIFFGGGTPSLIEPQNIA 90 (395) Q Consensus 13 ~~~~~~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~--~~~~~~~~~iy~GGGTPs~l~~~~l~ 90 (395) T Consensus 51 ~~~~~~~~LYiHIPFC~~~C~yC~F~~~~~~~-~~~~~Y~~aL~~Ei~~~~~~~~~~~~~i~tvy~GGGTPs~L~~~~l~ 129 (447) T PRK09058 51 TLRARKRLLYIHIPFCRTHCTFCGFFQNAWNP-ELVARYTDALIRELAMEADSPLTQSAPIHAVYFGGGTPTALSADDLA 129 (447) T ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCHHHHCCHHHHH T ss_conf 99999877999825415868999884848881-20999999999999998541012698168999808634748999999 Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC-CC Q ss_conf 99976640476444332113321041002347766303454114323433201345542244313478999986302-44 Q gi|254780628|r 91 LILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI-FP 169 (395) Q Consensus 91 ~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~-~~ 169 (395) T Consensus 130 ~l~~~i~~~f~l~~d~EiTiE~nP~~~~~~~l~~l~~~GvNRiSiGVQSf~~~vlk~lgR~h~~~~~~~~l~~l~~~g~~ 209 (447) T PRK09058 130 RLIEALREYLPLAPDCEITLEGRINGFDDEKIDAALDAGANRFSFGVQSFNTQVRRRAGRKDDREEVLAFLEELVARDRA 209 (447) T ss_pred HHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCHHHHHHHHHHHHHCCCC T ss_conf 99999997689988846988338787999999999964998057725448888998647999999999999999974996 Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCC-HHHHHHHHHHHHHHHHHHCCC Q ss_conf 4333210002585432211127887531800123464688259600014544980211-035678899986557887096 Q gi|254780628|r 170 RMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLP-SENVAVDLYNLTQSITSAHGL 248 (395) Q Consensus 170 ~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p-~~~~~~~~~~~a~e~L~~~GY 248 (395) T Consensus 210 ~iniDLIyGlPgQT~e~~~~dl~~~~~l~p~his~Y~L~~~~~t~~~~~~~~g~l~~~~d~~~~~~my~~a~~~L~~~Gy 289 (447) T PRK09058 210 AVVCDLIFGLPGQTPEIWQQDLAIVRDLGLDGVDLYALNVLPGTPLAKAVEKGKLPPPATPAEQADMYAYGVEFLAQAGW 289 (447) T ss_pred CEEEHHHCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCC T ss_conf 37647642798899999999999996459986887654504897799998749999985999999999999999997799 Q ss_pred CCCCCCCHHHHHHH-HCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHH Q ss_conf 24236743431011-01332112444123204320011578861578654247025778775389633322454999989 Q gi|254780628|r 249 HAYEISNHSFLGAE-SLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQA 327 (395) Q Consensus 249 ~~Yeis~fak~~~~-s~hn~~Yw~~~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i~~~~~p~~~~~~Ls~~e~~ 327 (395) T Consensus 290 ~~ye~s~fAr~~~ers~~N~~~~~~~~~lg~G~gA~s~~~g----~~~~N~~~l~~Y~~~i~~g~~pi~~~~~~~~~~~~ 365 (447) T PRK09058 290 RQLSNSHWARTNRERNLYNLLIKQGAECLPFGAGAGGSIGG----YGWMNHRDLDTYHEAIAAGQKPLMMMMRASPNAPL 365 (447) T ss_pred EEEECCHHCCCCHHHHHHCCCCCCCCCEEEECCCEEEECCC----EEEEECCCHHHHHHHHHCCCCCCCCHHCCCHHHHH T ss_conf 08733321168667765436647899889982684420597----47993599999999998799761212039988999 Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCC-HHHHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHHHC Q ss_conf 99999965623799888999883899-64999999998799498559899995675898999999861 Q gi|254780628|r 328 DEFLMMGLRLREGISVKDWEMLAGRN-LDIECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLA 394 (395) Q Consensus 328 ~e~l~~~LR~~~Gid~~~~~~~fg~~-~~~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~l~ 394 (395) T Consensus 366 ~~~i~~gl~~~~-l~~~~~~~~~~~~~~~~~~l~~~~~~GLv~-~~~~~l~LT~~Gr~~~~~Ia~~~~ 431 (447) T PRK09058 366 RAALQAGLERGR-LDLSELELRTPHAVALAPLLAQWQQAGLVE-LSSDCLRLTLAGRFWAVNLAQGLI 431 (447) T ss_pred HHHHHHHHHHCC-CCHHHHHCCCCHHHHHHHHHHHHHHCCCEE-EECCEEEECCCCCCHHHHHHHHHH T ss_conf 999998776174-458987626556999999999999789989-969999999776669999999999 |
|
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism] | Back alignment and domain information |
---|
Probab=100.00 E-value=0 Score=690.99 Aligned_cols=371 Identities=40% Similarity=0.725 Sum_probs=351.0 Q ss_pred CCEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCC-CEEEEEEECCCCCCCCCHHHHHHHHHH Q ss_conf 8549999406511837657730245788662889999999999999876189-505899962888887899999999976 Q gi|254780628|r 17 NSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGP-RSISSIFFGGGTPSLIEPQNIALILDG 95 (395) Q Consensus 17 ~~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~-~~~~~iy~GGGTPs~l~~~~l~~ll~~ 95 (395) T Consensus 33 ~~~slYiHiPFC~~~C~YC~fn~~~~~~~~~~~~Y~~aL~~Ei~~~~~~~~~~~~v~ti~~GGGTPslL~~~~l~~ll~~ 112 (416) T COG0635 33 KPLSLYIHIPFCVSKCPYCDFNSHVTKRGQPVDEYLDALLEEIELVAALLGGQREVKTIYFGGGTPSLLSPEQLERLLKA 112 (416) T ss_pred CCCEEEEECCCHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHH T ss_conf 87368887232125088788854534777739999999999999988622788727899976983267799999999999 Q ss_pred HHHCC-CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC-CCCCCC Q ss_conf 64047-6444332113321041002347766303454114323433201345542244313478999986302-444333 Q gi|254780628|r 96 IAKNW-TVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI-FPRMSF 173 (395) Q Consensus 96 i~~~~-~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~-~~~v~i 173 (395) T Consensus 113 l~~~~~~~~~~~EitiE~nP~~~~~e~~~~l~~~GvNRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~~in~ 192 (416) T COG0635 113 LRELFNDLDPDAEITIEANPGTVEAEKFKALKEAGVNRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKAGFTSINI 192 (416) T ss_pred HHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEE T ss_conf 99972357888279995088866899999999829877986014599899997478887899999999998638974788 Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC Q ss_conf 21000258543221112788753180012346468825960001454498021103567889998655788709624236 Q gi|254780628|r 174 DLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEI 253 (395) Q Consensus 174 Dli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~Yei 253 (395) T Consensus 193 DLIyglP~QT~~~~~~~l~~a~~l~pdhis~y~L~~~p~t~~~~~~~~~~-~lP~~d~~~~~~~~~~e~L~~~Gy~~yei 271 (416) T COG0635 193 DLIYGLPGQTLESLKEDLEQALELGPDHLSLYSLAIEPGTKFAQRKIKGK-ALPDEDEKADMYELVEELLEKAGYRQYEI 271 (416) T ss_pred EEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHHCCCCC-CCCCHHHHHHHHHHHHHHHHHCCCHHEEC T ss_conf 72438999999999999999983499878646268658856766233577-89986899999999999999779641061 Q ss_pred CCHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHH Q ss_conf 74343101101332112444123204320011578861578654247025778775389633322454999989999999 Q gi|254780628|r 254 SNHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEFLMM 333 (395) Q Consensus 254 s~fak~~~~s~hn~~Yw~~~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i~~~~~p~~~~~~Ls~~e~~~e~l~~ 333 (395) T Consensus 272 snfa~~~~e~~hNl~yw~~~~~lGiG~gA~g~~~~----~~~~n~~~~~~y~~~~~~~~~~~~~~~~l~~~d~~~e~~i~ 347 (416) T COG0635 272 SNFAKPGGECRHNLQYWETKDYLGIGAGAHGRIGG----TRYQNKKNLKTYLEAVDEGGLPLVEGEELTPDDLIREALIL 347 (416) T ss_pred HHHCCCCHHHHHHHCCCCCCCEEEECCCCEEECCC----CHHHCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHH T ss_conf 23127647777665156479717866770001344----24343469999999985277643443317888999999998 Q ss_pred HHHHCCCCCHHHHHHHHCCCHH----HHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHHHC Q ss_conf 6562379988899988389964----999999998799498559899995675898999999861 Q gi|254780628|r 334 GLRLREGISVKDWEMLAGRNLD----IECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLA 394 (395) Q Consensus 334 ~LR~~~Gid~~~~~~~fg~~~~----~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~l~ 394 (395) T Consensus 348 gLr~~~gv~~~~~~~~~~~-~~~~~~~~~l~~~~~~Gll~-~~~~~~~lt~~g~~~~~~i~~~f~ 410 (416) T COG0635 348 GLRLNFGVDLAELEERFGI-FKFAEILELLAELIADGLLE-LDGDRLRLTEKGRLLLRSIAEAFD 410 (416) T ss_pred HHHHHCCCCHHHHHHHHCC-CHHHHHHHHHHHHHHCCCEE-ECCCEEEECCCHHHHHHHHHHHHH T ss_conf 6577448678999998486-05666799999998689689-639879988530647999999999 |
|
>PRK08446 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
---|
Probab=100.00 E-value=0 Score=683.77 Aligned_cols=347 Identities=32% Similarity=0.503 Sum_probs=311.3 Q ss_pred EEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHH-HHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHH Q ss_conf 499994065118376577302457886628899999999999998-7618950589996288888789999999997664 Q gi|254780628|r 19 LGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMR-QLTGPRSISSIFFGGGTPSLIEPQNIALILDGIA 97 (395) Q Consensus 19 l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~-~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~ 97 (395) T Consensus 1 ~~LYiHiPFC~~~C~YCdF~~~~~~~~-~~~~Y~~aL~~Ei~~~~~~~~~~~~i~tiy~GGGTPS~l~~~~l~~ll~~l~ 79 (351) T PRK08446 1 MLLYIHIPFCESKCGYCAFNSYEDKFD-LKEEYFQALCLDLKFQLKQFIQDEKIESVFIGGGTPSTVSAKLYEPIFEIIY 79 (351) T ss_pred CEEEEECCCCCCCCCCCCCCCEECCCC-CHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHCCHHHHHHHHHHHH T ss_conf 978998178388089997928517956-7999999999999999876268993669996897456379999999999999 Q ss_pred HCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC-CCCCCCCCC Q ss_conf 0476444332113321041002347766303454114323433201345542244313478999986302-444333210 Q gi|254780628|r 98 KNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI-FPRMSFDLI 176 (395) Q Consensus 98 ~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~-~~~v~iDli 176 (395) T Consensus 80 ~~~--~~~~EiTiE~nP~~~~~~~l~~l~~~GvNRiSiGVQSf~d~~Lk~lgR~H~~~~~~~ai~~~r~~gf~niniDLI 157 (351) T PRK08446 80 PYL--SKDCEITTEANPNSATLAWLKGMKNLGVNRISFGVQSFHEDKLKFLGRIHSKNQIIKAIENAKKAGFKNISIDLI 157 (351) T ss_pred HHC--CCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEECHHHH T ss_conf 766--988359997676868999999998649876999731376899998189988999999999999849963422553 Q ss_pred CCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCH Q ss_conf 00258543221112788753180012346468825960001454498021103567889998655788709624236743 Q gi|254780628|r 177 YALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEISNH 256 (395) Q Consensus 177 ~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~Yeis~f 256 (395) T Consensus 158 yGlP~Qt~e~~~~~l~~~~~l~p~HiS~Y~L~ie~~T~~~~~~~~~~----~~---~~~~~~~~~~L~~~Gy~~YEiSnf 230 (351) T PRK08446 158 YNTKLDNKKLLKEELKLAKELPITHLSAYALTIEENTPFEEKNAKKK----DD---ENLAKFVREQLEEFGFKQYEVSNF 230 (351) T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCEEECCCCEECCCCHHHHCCCCCC----CH---HHHHHHHHHHHHHCCCCCCCHHHH T ss_conf 17999999999999999974896979742304469982332567899----75---999999999999769974324443 Q ss_pred HHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCCCC-EEECCHHHHHHHHHHHHH Q ss_conf 4310110133211244412320432001157886157865424702577877538963332-245499998999999965 Q gi|254780628|r 257 SFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAVVE-KEFLSSEQQADEFLMMGL 335 (395) Q Consensus 257 ak~~~~s~hn~~Yw~~~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i~~~~~p~~~-~~~Ls~~e~~~e~l~~~L 335 (395) T Consensus 231 Ak-g~~s~HN~~YW~~~~ylG~G~gA~s~~~~----~R~~N~~~~~~Yi~~------~~~~~~e~Ls~~~~~~E~lmlgL 299 (351) T PRK08446 231 GK-NYQCKHNLGYWQGKDYLGCGAGAVGFIAN----KRFYAAKDLENYIKN------PLFRSIETLSEEDLRLEKLFLGL 299 (351) T ss_pred CC-CCCCCCCCCCCCCCCEEEECCCCCEECCC----EEEECCCCHHHHHHC------CCCCCEEECCHHHHHHHHHHHHH T ss_conf 14-66544355754698579982462330699----878767999999827------31055534888689999999866 Q ss_pred HHCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHHHC Q ss_conf 62379988899988389964999999998799498559899995675898999999861 Q gi|254780628|r 336 RLREGISVKDWEMLAGRNLDIECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLA 394 (395) Q Consensus 336 R~~~Gid~~~~~~~fg~~~~~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~l~ 394 (395) T Consensus 300 R~~~Gi~l~~~~~~~~~-----~~~~l~~~~~~~-~~~~--rlt~~g~~lad~ia~~~l 350 (351) T PRK08446 300 RSIVGVDLSLLDEKQLQ-----KAKILLKEKKLF-IKNG--RLFNKNFFLADEIALYLL 350 (351) T ss_pred HCCCCCCHHHHHHHHHH-----HHHHHHHCCCEE-EECC--EEEECCCEEHHHHHHHHH T ss_conf 55279898998388889-----999999679879-5789--884278076689999972 |
|
>PRK05904 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
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Probab=100.00 E-value=0 Score=672.32 Aligned_cols=349 Identities=27% Similarity=0.465 Sum_probs=303.8 Q ss_pred CCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHH Q ss_conf 98854999940651183765773024578866288999999999999987618950589996288888789999999997 Q gi|254780628|r 15 GSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILD 94 (395) Q Consensus 15 ~~~~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~ 94 (395) T Consensus 3 ~~k~~~LYIHIPFC~~kC~YCdF~s~~~~~~--~~~~~~~~~~el~~~~~~~~~~~i~TIyfGGGTPSlL~~~~l~~ll~ 80 (353) T PRK05904 3 NKKTKHLYIHIPFCQYICTFCDFKRILKTPQ--TKKIFKDFLKNIKMHIKNFKIKQFKTIYLGGGTPNCLNDQLLDILLS 80 (353) T ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCCCCCC--CHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHCCHHHHHHHHH T ss_conf 8886669998089987089998984188768--59999999999999987647995448998998602089999999999 Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC-CCCCCC Q ss_conf 6640476444332113321041002347766303454114323433201345542244313478999986302-444333 Q gi|254780628|r 95 GIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI-FPRMSF 173 (395) Q Consensus 95 ~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~-~~~v~i 173 (395) T Consensus 81 ~i~~~--~~~~~EiTiEaNP~~~~~ekL~~lk~~GVNRiSlGVQSf~d~~Lk~LGR~H~~~~~~~ai~~~r~~Gf~nIsi 158 (353) T PRK05904 81 TIKPY--VDNNCEFTIECNPELITQSQINLLKKNKVNRISLGVQSMNNNILKQLNRTHTIQDSKEAINLLHKNGIYNISC 158 (353) T ss_pred HHHHH--CCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEE T ss_conf 99976--3878359998651448789999999649876888745599899998389998999999999999819973600 Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC Q ss_conf 21000258543221112788753180012346468825960001454498021103567889998655788709624236 Q gi|254780628|r 174 DLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEI 253 (395) Q Consensus 174 Dli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~Yei 253 (395) T Consensus 159 DLIyGlPgQT~~~~~~~L~~~l~l~p~HiS~Y~LtiE~gT~~~~~~~-----~~~~d~~~~~~~~~~~~L~~~Gy~~YEI 233 (353) T PRK05904 159 DFLYCLPILKLKDLDEVFNFILKHKINHISFYSLEIKEGSILKKYHY-----TIDEDKEAEQLNYIKAKFNKLNYKRYEV 233 (353) T ss_pred CEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHCCCCC-----CCCCHHHHHHHHHHHHHHHHCCCCCEEE T ss_conf 42635999999999999999996599917888889857973204788-----9992799999999999998669970663 Q ss_pred CCHHH-HHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHHH Q ss_conf 74343-10110133211244412320432001157886157865424702577877538963332245499998999999 Q gi|254780628|r 254 SNHSF-LGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEFLM 332 (395) Q Consensus 254 s~fak-~~~~s~hn~~Yw~~~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i~~~~~p~~~~~~Ls~~e~~~e~l~ 332 (395) T Consensus 234 SNfAk~pg~es~HN~~YW~~~~YlGiG~gAhs~~~~~R~----~n~~~~~~~~~----------~~e~Ls~~~~~~E~im 299 (353) T PRK05904 234 SNWTNNFKYISKHNLAYWRTKDWAAIGWGAHGFENNIEY----FFDGSIQNWIL----------IKKVLTDHELYQQILI 299 (353) T ss_pred CCCCCCCCCCCCCHHHHCCCCCEEEEECCCCCCCCCEEE----ECCCCCCCHHH----------CCCCCCHHHHHHHHHH T ss_conf 512379698461118667999879980661425798378----75656100000----------0054898899999999 Q ss_pred HHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHHHC Q ss_conf 96562379988899988389964999999998799498559899995675898999999861 Q gi|254780628|r 333 MGLRLREGISVKDWEMLAGRNLDIECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLA 394 (395) Q Consensus 333 ~~LR~~~Gid~~~~~~~fg~~~~~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~l~ 394 (395) T Consensus 300 lgLR~~~Gidl~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~--~~~~~~~~~~~~~~ 353 (353) T PRK05904 300 MGLRLKDGLDLNKEINKEAYLYFKNKLKH------ISINKNNHLRA--DNIDLLNLSIIDIF 353 (353) T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHE------EEEECCCCEEE--CHHHHHHHHHHHCC T ss_conf 76487529273676347899999865434------89812782653--31657776776329 |
|
>PRK08629 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
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Probab=100.00 E-value=0 Score=657.82 Aligned_cols=362 Identities=21% Similarity=0.353 Sum_probs=317.5 Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHH Q ss_conf 89885499994065118376577302457886628899999999999998761895058999628888878999999999 Q gi|254780628|r 14 QGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALIL 93 (395) Q Consensus 14 ~~~~~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll 93 (395) T Consensus 39 ~~~~~~~LYiHIPFC~~~C~YC~F~~~~~~~~-~~~~Y~~aL~kEi~~~~~~--~~~i~tiy~GGGTPs~L~-~~l~~~l 114 (424) T PRK08629 39 VEGKKYMLYAHVPFCHTLCPYCSFHRFLFKED-KARAYFISLRKEMEMVKEL--GYDFESMYVGGGTTTILE-DELAKTL 114 (424) T ss_pred CCCCEEEEEEECCCCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHC--CCCCCEEEECCCHHHCCH-HHHHHHH T ss_conf 99985689989054079888998958268824-1999999999999998853--998376997797122579-9999999 Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHH---HHHHCCCCC Q ss_conf 76640476444332113321041002347766303454114323433201345542244313478999---986302444 Q gi|254780628|r 94 DGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAI---HLARNIFPR 170 (395) Q Consensus 94 ~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~---~~~~~~~~~ 170 (395) T Consensus 115 ~~~~~~f~~~---EiTiE~nP~~~~~~~l~~l~~~-vNRiSlGVQsf~~~~L~~lgR~h~~~~~~~~~~~~~~a~~~f~n 190 (424) T PRK08629 115 ELAKKLFSIK---EVSCESDPNHLDPPGLKQLKGL-IDRLSIGVQSFNDDILKMVDRYEKFGSGQETFEKIMAAKGLFPI 190 (424) T ss_pred HHHHHHCCCC---EEEEECCCCCCCHHHHHHHHHH-CCEEEEECCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCC T ss_conf 9998648982---4999538686899999999864-25166623669988999809999854699999999997634462 Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 33321000258543221112788753180012346468825960001454498021103567889998655788709624 Q gi|254780628|r 171 MSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHA 250 (395) Q Consensus 171 v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~ 250 (395) T Consensus 191 iniDLIyGlP~QT~~~~~~~l~~~~~l~p~hIS~Y~L~iep~t~---~~~~~~l~~p~~d~~~~~~~i~~~~~--~~y~~ 265 (424) T PRK08629 191 INVDLIFNFPGQTDEVLQHDLDIAKRLDPRQITTYPLMKSHQTR---KSVKGSLGASQKDNARQYRQILNSLF--GQYNQ 265 (424) T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEECCCCEECCCCC---HHHCCCCCCCCHHHHHHHHHHHHHHH--CCCEE T ss_conf 53532327999999999999999981798989863662264721---34237899898799999999999972--79889 Q ss_pred CCCCCHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHH Q ss_conf 23674343101101332112444123204320011578861578654247025778775389633322454999989999 Q gi|254780628|r 251 YEISNHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEF 330 (395) Q Consensus 251 Yeis~fak~~~~s~hn~~Yw~~~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i~~~~~p~~~~~~Ls~~e~~~e~ 330 (395) T Consensus 266 ~s~~~fak~~~~~~~~y-~~~~~~ylG~G~gA~S~l~g----~r~~N~~~l~~Y~~~i~~g~lpv~~~~~ls~~d~~~~~ 340 (424) T PRK08629 266 LSAWAFSKKNDEGFDEY-VIDYDEYLGVGSGSFSFLDG----TLYVNTFSLRKYQERIAAGKMGVIAQKNFSKKEVMQYR 340 (424) T ss_pred EEHHHCCCCCCHHHHCC-CCCCCEEEEEECCEEEECCC----EEEECCCCHHHHHHHHHCCCCCEEECCCCCHHHHHHHH T ss_conf 60121259973055411-16798389983481386698----78986899999999998799846514239999999999 Q ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHH---HHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHHHCC Q ss_conf 9996562379988899988389964999---9999987994985598999956758989999998619 Q gi|254780628|r 331 LMMGLRLREGISVKDWEMLAGRNLDIEC---ERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLAV 395 (395) Q Consensus 331 l~~~LR~~~Gid~~~~~~~fg~~~~~~~---~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~l~i 395 (395) T Consensus 341 iilgL~-~~gvd~~~f~~~fG~~~~~~~~~~i~~l~~~GLl~-~~~~~lrLT~kG~ll~n~V~~eF~~ 406 (424) T PRK08629 341 FLLGLF-SGRLSIKYFRETFGVNLDTALFKEMLLLKLIGAIK-NDPGDLIVTDFGKYLGVVMMKEFYT 406 (424) T ss_pred HHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCEE-ECCCEEEECCCHHHHHHHHHHHHHH T ss_conf 999998-77979999999989599999999999999889989-8199999990478999999999986 |
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>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase; InterPro: IPR004559 Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins called HemN (IPR004558 from INTERPRO) | Back alignment and domain information |
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Probab=100.00 E-value=0 Score=654.37 Aligned_cols=361 Identities=35% Similarity=0.652 Sum_probs=334.3 Q ss_pred EEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHC----CCEEEEEEECCCCCCCCCHHHHHHHHH Q ss_conf 4999940651183765773024578866288999999999999987618----950589996288888789999999997 Q gi|254780628|r 19 LGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTG----PRSISSIFFGGGTPSLIEPQNIALILD 94 (395) Q Consensus 19 l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~----~~~~~~iy~GGGTPs~l~~~~l~~ll~ 94 (395) T Consensus 1 ~slYIHIPfCe~kC~YCdFNsy~~ksd~p~~eY~~aL~~dl~~~l~~t~dsiqQ~~l~siFIGGGTP~~lS~e~~~~l~~ 80 (371) T TIGR00539 1 LSLYIHIPFCEQKCGYCDFNSYAQKSDIPKEEYLQALLQDLKAALAKTDDSIQQEDLKSIFIGGGTPSLLSAEALKKLLE 80 (371) T ss_pred CEEEEECCHHCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH T ss_conf 91355560223758886533245542785679999999999999986044323676556885688741468999999999 Q ss_pred HHHHCCC-CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC-CCCCC Q ss_conf 6640476-444332113321041002347766303454114323433201345542244313478999986302-44433 Q gi|254780628|r 95 GIAKNWT-VSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI-FPRMS 172 (395) Q Consensus 95 ~i~~~~~-~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~-~~~v~ 172 (395) T Consensus 81 ~I~~~~~P~sd~~Eit~eANP~~~~ae~~kglk~aGinRlS~GvQsF~dDkL~~lgR~H~~k~~~~a~e~a~~sG~enis 160 (371) T TIGR00539 81 EIKKQLKPLSDDIEITVEANPDLVEAEKLKGLKEAGINRLSLGVQSFEDDKLEKLGRVHKAKDVASAVELAKKSGLENIS 160 (371) T ss_pred HHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCC T ss_conf 98752174310211111078212569886367655702332133454155788864211333466799999871752000 Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC Q ss_conf 32100025854322111278875318001234646882596000145449802110356788999865578870962423 Q gi|254780628|r 173 FDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYE 252 (395) Q Consensus 173 iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~Ye 252 (395) T Consensus 161 lDL~~glP~qtl~~l~~~l~~A~eL~~~H~S~Y~L~vEpnT~f~~~~~KGrlhlP~~~~~a~~~e~v~~~le~~g~~QYE 240 (371) T TIGR00539 161 LDLMYGLPLQTLEELKEELKLALELDAEHLSVYALIVEPNTVFEKRAKKGRLHLPDDDALAEIYEVVRELLEAFGYKQYE 240 (371) T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHH T ss_conf 55440786134899999986553178451123323422330454268888789467034567999999999855822221 Q ss_pred CCCHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHHH Q ss_conf 67434310110133211244412320432001157886157865424702577877538963332245499998999999 Q gi|254780628|r 253 ISNHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEFLM 332 (395) Q Consensus 253 is~fak~~~~s~hn~~Yw~~~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i~~~~~p~~~~~~Ls~~e~~~e~l~ 332 (395) T Consensus 241 ~SnyAkaG~q~KHNL~YW~~~dYlg~GaGA~G~~~~~r----~~~~~~~k~yi~~~~~rg~~~~~~~~V~k~d~~~E~~f 316 (371) T TIGR00539 241 VSNYAKAGYQVKHNLAYWSAEDYLGIGAGAHGKVANER----TVAKKLVKNYIDKILERGVELLDEKEVTKEDKRLEKLF 316 (371) T ss_pred HHHHHHCCCCCCCCCCCCCCCCCEEECCCEEEECCCCE----EEEECCHHHHCCCHHHCCCCHHCCCCCCHHHHHHHHHH T ss_conf 23886378762002233676661353374010014740----25643023312203442630010357760335689988 Q ss_pred HHHHHCCCCCHHHHHHHHCCCHHHH---HHHHHHHCCCEEEEECCEEEECHHHHHH Q ss_conf 9656237998889998838996499---9999998799498559899995675898 Q gi|254780628|r 333 MGLRLREGISVKDWEMLAGRNLDIE---CERNLQRQGFIERVQFSRLRCTQRGMTM 385 (395) Q Consensus 333 ~~LR~~~Gid~~~~~~~fg~~~~~~---~~~~L~~~Gli~~~~~~~l~lT~~G~~~ 385 (395) T Consensus 317 lglR~~~gV~k~~f~e~~G~S~~~~~~~~~ka~~~n~~~~--nsds~~~~eh~~~~ 370 (371) T TIGR00539 317 LGLRLVEGVEKKEFEEKKGLSLSKLLIEVDKALAKNNLVE--NSDSFVILEHAKLY 370 (371) T ss_pred HHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHHHC T ss_conf 5447662354234421026306777778889998745213--46789999987632 |
This family contains a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including Escherichia coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the Escherichia coli hemN family. The member of this family from Bacillus subtilis was shown to complement a hemF/hemN double mutant of Salmonella typhimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize haem de novo. ; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin biosynthetic process, 0005737 cytoplasm. |
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase; InterPro: IPR004558 This family represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions | Back alignment and domain information |
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Probab=100.00 E-value=0 Score=627.57 Aligned_cols=385 Identities=21% Similarity=0.346 Sum_probs=350.9 Q ss_pred HHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCC-CEEEEEEECCCCC Q ss_conf 137899884288988549999406511837657730245788662889999999999999876189-5058999628888 Q gi|254780628|r 3 YLSAYENNMTGQGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGP-RSISSIFFGGGTP 81 (395) Q Consensus 3 ~~~~~~~~~~~~~~~~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~-~~~~~iy~GGGTP 81 (395) T Consensus 36 f~~a~~~~nnl~~~~PLSLY~HiPFC~~~CyFCgCn~I~t~~~~~~~~YL~~l~ke~~l~~~~~d~~R~V~QLHwGGGTP 115 (462) T TIGR00538 36 FKTALIKSNNLYKKTPLSLYVHIPFCEKACYFCGCNVIITRRKEKKDPYLEALKKEIALVAPLLDKDREVAQLHWGGGTP 115 (462) T ss_pred HHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC T ss_conf 99998722567888784112455234121320146611305565101679999999999877752489468876278983 Q ss_pred CCCCHHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHH Q ss_conf 87899999999976640476-44433211332104100234776630345411432343320134554224431347899 Q gi|254780628|r 82 SLIEPQNIALILDGIAKNWT-VSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAA 160 (395) Q Consensus 82 s~l~~~~l~~ll~~i~~~~~-~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~ 160 (395) T Consensus 116 ~YL~~~Q~~~l~~~i~~~F~nf~~daEiSiEidPR~~~~e~~~~L~~~GFNRlS~GvQDfd~~VQ~avnR~QP~e~i~~~ 195 (462) T TIGR00538 116 TYLSPEQIEELMKEIREAFPNFSEDAEISIEIDPRYLTKEVIKALRDEGFNRLSFGVQDFDKEVQQAVNRIQPEEMIFEL 195 (462) T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEECCEECCCHHHHHHHCCCCCHHHHHHH T ss_conf 33788999999999998732011584477652374137889999997589664235210785554443134868999999 Q ss_pred HHHHHCC-CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHH Q ss_conf 9986302-444333210002585432211127887531800123464688259600014544980211035678899986 Q gi|254780628|r 161 IHLARNI-FPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLT 239 (395) Q Consensus 161 ~~~~~~~-~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a 239 (395) T Consensus 196 ~~~~R~~Gf~SiN~DLIYGLP~Qt~esF~~Tl~~v~~LnPDRlAvFnyAyvP~-vk~~q~k~~~~~LPS~~~KL~Il~~~ 274 (462) T TIGR00538 196 MEKAREAGFESINLDLIYGLPKQTKESFEKTLEKVAELNPDRLAVFNYAYVPW-VKPAQRKIPEEALPSAEEKLEILEET 274 (462) T ss_pred HHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEHHHHHHHHCC-HHHHHCCCCHHCCCCHHHHHHHHHHH T ss_conf 99998669827874201388887867899999998531877001210222101-57785027620058878999999999 Q ss_pred HHHHHHCCCCCCCCCCHHHHHHH----------HCCCCCCCC--CCCEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHH Q ss_conf 55788709624236743431011----------013321124--441232043200115788615786542470257787 Q gi|254780628|r 240 QSITSAHGLHAYEISNHSFLGAE----------SLHNLNYWR--YGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKM 307 (395) Q Consensus 240 ~e~L~~~GY~~Yeis~fak~~~~----------s~hn~~Yw~--~~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~ 307 (395) T Consensus 275 I~~L~~~gY~fIGMDHFAkpddELavAqr~geL~RNFQGYTT~~~~~lLG~GvtSIsm~~D----~Y~QN~K~L~~Y~~~ 350 (462) T TIGR00538 275 IAFLTEAGYVFIGMDHFAKPDDELAVAQRKGELHRNFQGYTTKKETDLLGFGVTSISMLGD----VYAQNYKTLKDYYKA 350 (462) T ss_pred HHHHHHCCCEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECHHHHHHHCC----CCCCCCHHHHHHHHH T ss_conf 9999757975851445779713899998505300057652248972156301102112002----122553668889875 Q ss_pred HHCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC----CHHHHHH------HHHHHCCCEEEEECCEEE Q ss_conf 753896333224549999899999996562379988899988389----9649999------999987994985598999 Q gi|254780628|r 308 VRKNGHAVVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGR----NLDIECE------RNLQRQGFIERVQFSRLR 377 (395) Q Consensus 308 i~~~~~p~~~~~~Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~----~~~~~~~------~~L~~~Gli~~~~~~~l~ 377 (395) T Consensus 351 lD~~~~pv~rG~~L~~dD~iRr~VI~~lmcnl~l~y~~iE~~f~~GfdC~F~~YFakeL~~L~~le~dGLl~-~~~~G~~ 429 (462) T TIGR00538 351 LDEGKLPVERGVALSQDDLIRREVIKELMCNLKLDYSKIEEKFDLGFDCDFKDYFAKELEKLKPLEEDGLLK-VEEDGIE 429 (462) T ss_pred HHCCCCCEEECEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCEE-ECCCCEE T ss_conf 200578451051006122202889999986237666777645078854686899899888653897638604-5178337 Q ss_pred ECHHHHHHHHHHHHHH Q ss_conf 9567589899999986 Q gi|254780628|r 378 CTQRGMTMLDSVIANL 393 (395) Q Consensus 378 lT~~G~~~~d~I~~~l 393 (395) T Consensus 430 vt~~GRlLiRN~Am~F 445 (462) T TIGR00538 430 VTPKGRLLIRNIAMVF 445 (462) T ss_pred EECCCCCEEEHHHHHH T ss_conf 8047870120188762 |
HemN catalyses the anaerobic transformation of coproporhyrinogen-III into protoporphyrinogen-IX during porphyrin biosynthesis. Several species, including Escherichia coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity, IPR004559 from INTERPRO. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterised protein.; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin biosynthetic process, 0005737 cytoplasm. |
>PRK08207 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
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Probab=100.00 E-value=0 Score=587.67 Aligned_cols=295 Identities=25% Similarity=0.453 Sum_probs=269.8 Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCEEEECC-CCCCHHHHHHHHHHHHHHHHHHHC--CCEEEEEEECCCCCCCCCHHHHH Q ss_conf 898854999940651183765773024578-866288999999999999987618--95058999628888878999999 Q gi|254780628|r 14 QGSNSLGVYVHWPFCVKKCPYCDFNSHVRR-YKVGQENFIQSFLTEMQWMRQLTG--PRSISSIFFGGGTPSLIEPQNIA 90 (395) Q Consensus 14 ~~~~~l~lYihiPFC~~~C~yC~f~~~~~~-~~~~~~~y~~~l~~Ei~~~~~~~~--~~~~~~iy~GGGTPs~l~~~~l~ 90 (395) T Consensus 168 ~~~~~~SLYIHIPFC~~kC~YCdF~s~~i~~~~~~v~~Yl~aL~kEI~~~~~~l~~~~~~i~TIY~GGGTPS~Ls~~ql~ 247 (497) T PRK08207 168 KDKNEVSIYIGIPFCPTRCLYCSFPSYPINGRKGLVEPYLEALHYEIEEIGKYLKEKGLKIETIYFGGGTPTSITAEEFE 247 (497) T ss_pred CCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECEEEECCCCCCCCCHHHHH T ss_conf 37884799998189589878999803115776331999999999999999987623798035699799810029999999 Q ss_pred HHHHHHHHCC-CCCCCCCCCCCCC-CCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC- Q ss_conf 9997664047-6444332113321-041002347766303454114323433201345542244313478999986302- Q gi|254780628|r 91 LILDGIAKNW-TVSSNVEITIEAN-PSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI- 167 (395) Q Consensus 91 ~ll~~i~~~~-~~~~~~e~t~E~~-P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~- 167 (395) T Consensus 248 ~ll~~i~~~F~~~~~~~EiTvEanRPdtit~ekL~~lk~~GvnRiSiGvQSf~~~~Lk~lGR~Ht~~~~~~a~~~ar~~G 327 (497) T PRK08207 248 KLLEEIYESFPDVKNVKEFTVEAGRPDTITEEKLEVLKKYNVDRISINPQSMNDETLKAIGRHHTVEDIIEKFHLARELG 327 (497) T ss_pred HHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCC T ss_conf 99999998657689997799978798962999999999759875888353299899998189999999999999999859 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC Q ss_conf 44433321000258543221112788753180012346468825960001454498021103567889998655788709 Q gi|254780628|r 168 FPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHG 247 (395) Q Consensus 168 ~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~G 247 (395) T Consensus 328 F~nIN~DLI~GLPgqt~~~~~~tL~~i~~L~Pd~iTvhsLaikr~s~l~~~~~--~~~l~~~~~~~~m~~~~~~~~~~~g 405 (497) T PRK08207 328 FDNINMDLIIGLPGEGLEEFKHTLEEIEKLMPDSLTVHTLSIKRASRLTENKE--KYKVADREEINAMMEEAEEWAKELG 405 (497) T ss_pred CCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCCHHHHCCC--CCCCCCHHHHHHHHHHHHHHHHHCC T ss_conf 98497743537999999999999999981399825876665546860222455--6689985899999999999999779 Q ss_pred CCCC------------CCCCHHHHHHHHCCCCCCCC-CCCEEECCCCCCCCCC--CCCCEEEEEEECCCHHHHHHHHC Q ss_conf 6242------------36743431011013321124-4412320432001157--88615786542470257787753 Q gi|254780628|r 248 LHAY------------EISNHSFLGAESLHNLNYWR-YGDYIGIGPGAHSRVK--VGSHRVAISIEKHPESWLKMVRK 310 (395) Q Consensus 248 Y~~Y------------eis~fak~~~~s~hn~~Yw~-~~d~iG~G~GA~S~l~--~~~~~~~~~~~~~~~~Y~~~i~~ 310 (395) T Consensus 406 ~~pYYlYRQKnm~gn~EnvgYak~G~e~~yNI~imeE~qtiig~GaGA~sKiv~~~~~ri~R~~N~Kd~~~Yi~ride 483 (497) T PRK08207 406 YVPYYLYRQKNMLGNLENVGYAKPGKESIYNIQIMEEKQTIIGLGAGAVSKFVFPKEGRIERFANPKDPKEYNERVDE 483 (497) T ss_pred CCCCHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHCCEEEECCCCCEEEEECCCCCEEEECCCCCHHHHHHHHHH T ss_conf 984101343044655202332268975254799987207689985883115775589817870588998999999999 |
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>TIGR00433 bioB biotin synthase; InterPro: IPR002684 Biotin synthase 2 | Back alignment and domain information |
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Probab=98.64 E-value=1.3e-06 Score=64.03 Aligned_cols=243 Identities=16% Similarity=0.179 Sum_probs=148.9 Q ss_pred CCCCCCCCCCEEEE--------CCC-CCCHHHHH--H--------------HHHHHHHHHHHHHC---CCE--EEEEEEC Q ss_conf 11837657730245--------788-66288999--9--------------99999999987618---950--5899962 Q gi|254780628|r 28 CVKKCPYCDFNSHV--------RRY-KVGQENFI--Q--------------SFLTEMQWMRQLTG---PRS--ISSIFFG 77 (395) Q Consensus 28 C~~~C~yC~f~~~~--------~~~-~~~~~~y~--~--------------~l~~Ei~~~~~~~~---~~~--~~~iy~G 77 (395) T Consensus 42 C~EDC~YCsQSs~~~CniPiYPlk~~~~~~~~~~~~~DeCskisssier~k~~l~eA~~a~~~G~PnrGfPlWv~rFClv 121 (350) T TIGR00433 42 CPEDCGYCSQSSRSKCNIPIYPLKDTGLPIERLKKVDDECSKISSSIEREKEILEEARAAKAAGAPNRGFPLWVTRFCLV 121 (350) T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCEEEE T ss_conf 76677678855526688622456674178998876765432222111111378999999997087888853035014655 Q ss_pred --CCCCCCCC--HHHHHHHHHHHHHC-----CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHH Q ss_conf --88888789--99999999766404-----7644433211332104100234776630345411432343320134554 Q gi|254780628|r 78 --GGTPSLIE--PQNIALILDGIAKN-----WTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFL 148 (395) Q Consensus 78 --GGTPs~l~--~~~l~~ll~~i~~~-----~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~ 148 (395) T Consensus 122 asGR~~~~~~~~dref~~~v~~~~~~~~~ee~GL~~C------~~LG~l~~eqa~~LKdAGld~YNHNl~~TS~~~y~~I 195 (350) T TIGR00433 122 ASGRGPKDRESKDREFIEIVEAVVKIVEEEELGLKTC------ATLGLLDPEQAKQLKDAGLDRYNHNLDETSQEYYSKI 195 (350) T ss_pred ECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHH------HCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHCCCC T ss_conf 4178888777422028899999999975200371223------2037768899998886388611167367878766873 Q ss_pred HCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC--CCCCEEEEEEEEECCCEEHHHHHCCCCCC Q ss_conf 2244313478999986302444333210002585432211127887531--80012346468825960001454498021 Q gi|254780628|r 149 GRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRALSY--AVDHLSLYQLTIEKGTLFYKMHKDGDLVL 226 (395) Q Consensus 149 ~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l--~p~~is~Y~l~i~~~t~l~~~~~~~~~~~ 226 (395) T Consensus 196 ~sThty~DR~~T~~~~k~aGl~~CsGGI~Gl-gEt~~DrI~l~~~L~~L~p~peSvPiN~L~~~~GTP~~E~L~~~~~~~ 274 (350) T TIGR00433 196 ISTHTYDDRVDTVKNAKEAGLKVCSGGILGL-GETWEDRIGLALALANLSPEPESVPINFLVKIEGTPAYEKLADGEVKK 274 (350) T ss_pred EECCCHHHHHHHHHHHHHCCCCCCCCCEECC-CCCHHHHHHHHHHHHCCCCCCCEECCCCEECCCCCCCHHHHCCCCCCC T ss_conf 4323077679999999973887244623458-988899999999975277678701113202688885344315888673 Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCC--EEECCCCCCCCCCC Q ss_conf 103567889998655788709624236743431011013321124441--23204320011578 Q gi|254780628|r 227 PSENVAVDLYNLTQSITSAHGLHAYEISNHSFLGAESLHNLNYWRYGD--YIGIGPGAHSRVKV 288 (395) Q Consensus 227 p~~~~~~~~~~~a~e~L~~~GY~~Yeis~fak~~~~s~hn~~Yw~~~d--~iG~G~GA~S~l~~ 288 (395) T Consensus 275 L~~~~~Lk~iA~ari~mP~~-~iRl--a----gGR~~--~m~--e~~~kea~~~~ag~Nsif~G 327 (350) T TIGR00433 275 LSADDALKTIALARIIMPKA-EIRL--A----GGREV--NMK--ELQQKEAMCFMAGANSIFVG 327 (350) T ss_pred CCHHHHHHHHHHHHHHCCCC-EEEE--E----CCEEE--ECC--CCCHHHHHHHHHHHHHHEEC T ss_conf 38899999999988654311-0010--0----25145--047--67548999999842123046 |
8.1.6 from EC works with flavodoxin, S-adenosylmethionine, and possibly cysteine to catalyze the last step of the biotin biosynthetic pathway. The reaction consists of the introduction of a sulphur atom into dethiobiotin, thus requiring activation of C-H bonds . Biotin (vitamin H) is a prosthetic group in enzymes catalysing carboxylation and transcarboxylation reactions . Biotin synthase from Escherichia coli is a homodimer of 76 kDa, with each polypeptide chain carrying an oxygen-sensitive (4Fe-4S) cluster, probably ligated by three cysteines of a CXXXCXXC box conserved among all known BioB sequences and a fourth still not identified ligand. BioB displays a pyridoxal phosphate-dependent cysteine desulphurase activity, which allows mobilization of the sulphur atom from free cysteine . ; GO: 0004076 biotin synthase activity, 0009102 biotin biosynthetic process. |
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM | Back alignment and domain information |
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Probab=99.97 E-value=4.7e-30 Score=219.26 Aligned_cols=201 Identities=28% Similarity=0.538 Sum_probs=176.5 Q ss_pred CEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHH-CCCEEEEEEECCCCCCCCCHHHHHHHHHHH Q ss_conf 5499994065118376577302457886628899999999999998761-895058999628888878999999999766 Q gi|254780628|r 18 SLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLT-GPRSISSIFFGGGTPSLIEPQNIALILDGI 96 (395) Q Consensus 18 ~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~-~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i 96 (395) T Consensus 1 ~~~~~~~sRGC~~~C~fC~~~~~~~~---~~~~~~~~i~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 77 (216) T smart00729 1 PLALYIITRGCPRRCTFCSFPSARGK---LRSRYLEALVREIELLAEKGEKEILVGTVFIGGGTPTLLSPEQLEELLEAI 77 (216) T ss_pred CEEEEEEECCCCCCCCCCCCCCCCCC---CCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHH T ss_conf 97999998781984842981758896---457599999999999997089765300110024689888999999999999 Q ss_pred HHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCC-CCCCCCC Q ss_conf 404764443321133210410023477663034541143234332013455422443134789999863024-4433321 Q gi|254780628|r 97 AKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIF-PRMSFDL 175 (395) Q Consensus 97 ~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~-~~v~iDl 175 (395) T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~g~~~v~~giEs~~~~~l~~i~k~~~~~~~~~~i~~~~~~g~~~~~~~~ 157 (216) T smart00729 78 REILGLADDVEITIETRPGTLTEELLEALKEAGVNRVSLGVQSGSDEVLKAINRGHTVEDVLEAVEKLREAGPIKVSTDL 157 (216) T ss_pred HHHCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEEEE T ss_conf 98514356269999706021589999999984998666673550789998717999999999999999985893687757 Q ss_pred CCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHC Q ss_conf 0002585432211127887531800123464688259600014544 Q gi|254780628|r 176 IYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKD 221 (395) Q Consensus 176 i~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~ 221 (395) T Consensus 158 i~GlP~et~e~~~~t~~~~~~~~~~~i~~~~~~p~pgT~~~~~~~~ 203 (216) T smart00729 158 IVGLPGETEEDFEETLKLLKELGPDRVSIFPLSPRPGTPLAKLYKR 203 (216) T ss_pred EECCCCCCHHHHHHHHHHHHHCCCCEEEEECCEECCCCHHHHCCCC T ss_conf 8679999999999999999946919899874875699846650162 |
This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases. |
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics] | Back alignment and domain information |
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Probab=99.96 E-value=8.4e-28 Score=204.31 Aligned_cols=231 Identities=21% Similarity=0.307 Sum_probs=179.1 Q ss_pred HHHHHCCCCCCCEE-EEEEC----CC-CCC-CCCCCCCE-------EEECCCCCCH-------HHHHHH--HHHHHHHHH Q ss_conf 99884288988549-99940----65-118-37657730-------2457886628-------899999--999999998 Q gi|254780628|r 7 YENNMTGQGSNSLG-VYVHW----PF-CVK-KCPYCDFN-------SHVRRYKVGQ-------ENFIQS--FLTEMQWMR 63 (395) Q Consensus 7 ~~~~~~~~~~~~l~-lYihi----PF-C~~-~C~yC~f~-------~~~~~~~~~~-------~~y~~~--l~~Ei~~~~ 63 (395) T Consensus 50 l~~~lr~KPvRt~sgvaVVaVmt~p~~CPHg~CvfCpgg~~~~spQSytg~ep~~~R~~~~~ydpY~q~~~Rl~qL~~ig 129 (515) T COG1243 50 LREILRRKPVRTISGVAVVAVMTSPHGCPHGRCVFCPGGPDKDSPQSYTGEEPAALRAIKNRYDPYEQVRARLKQLETIG 129 (515) T ss_pred HHHHHHHCCCEECCCCEEEEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCC T ss_conf 99998536720024626899843888999980775899777788855478884266777605791888888899999739 Q ss_pred HHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCC----------------CCCCCCCCCCCCCCCCHHHHHHHHHH Q ss_conf 76189505899962888887899999999976640476----------------44433211332104100234776630 Q gi|254780628|r 64 QLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWT----------------VSSNVEITIEANPSSVEVNNFQGYRK 127 (395) Q Consensus 64 ~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~----------------~~~~~e~t~E~~P~~~~~~~l~~l~~ 127 (395) T Consensus 130 h--~~~KvEliim-GGTFta~~~~yqe~Fi~~~~~amn~f~~~le~a~~~ne~~~~r~vgitiETRPD~~~ee~ld~mlk 206 (515) T COG1243 130 H--TSDKVELIIM-GGTFTALSLEYQEWFLKVALKAMNDFGYDLEEAQRKNETAELRCVGITIETRPDYIDEEHLDQMLK 206 (515) T ss_pred C--CCCEEEEEEE-CCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHH T ss_conf 9--8642899996-265668887899999999998653122048898874000234226799834841007799999996 Q ss_pred CCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC---CCCEEE Q ss_conf 34541143234332013455422443134789999863024443332100025854322111278875318---001234 Q gi|254780628|r 128 AGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYA---VDHLSL 204 (395) Q Consensus 128 ~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~---p~~is~ 204 (395) T Consensus 207 yG~TrVELGVQSiyd~Vl~~~~RGHtvedv~~a~rLlKd~GfKv~~HiMpGLPgs~~erDl~~f~~~f~~p~f~PDmlKI 286 (515) T COG1243 207 YGVTRVELGVQSIYDDVLERTKRGHTVEDVVEATRLLKDAGFKVGYHIMPGLPGSDFERDLESFREIFEDPRFRPDMLKI 286 (515) T ss_pred CCCCEEEEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEE T ss_conf 38838998326579999998338961999999999998518379999658999988677899999997188889875788 Q ss_pred EEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHH Q ss_conf 646882596000145449802110356788999865 Q gi|254780628|r 205 YQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQ 240 (395) Q Consensus 205 Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~ 240 (395) T Consensus 287 YPtLVi~gT~Ly~mwk~G~Ykpy~~EEaVeli~~i~ 322 (515) T COG1243 287 YPTLVIEGTELYEMWKRGLYKPYTTEEAVELIVEIY 322 (515) T ss_pred EEEEEECCCHHHHHHHCCCCCCCCHHHHHHHHHHHH T ss_conf 402798782699999708987798899999999999 |
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>TIGR01212 TIGR01212 radical SAM protein, TIGR01212 family; InterPro: IPR005911 This uncharacterised protein family shows significant similarity to IPR005910 from INTERPRO, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast) | Back alignment and domain information |
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Probab=99.94 E-value=1.5e-25 Score=189.33 Aligned_cols=222 Identities=16% Similarity=0.226 Sum_probs=174.4 Q ss_pred CCEEEEEECCC-CCCC--------CCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCC--EEEEEEECCCCCCCCC Q ss_conf 85499994065-1183--------76577302457886628899999999999998761895--0589996288888789 Q gi|254780628|r 17 NSLGVYVHWPF-CVKK--------CPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPR--SISSIFFGGGTPSLIE 85 (395) Q Consensus 17 ~~l~lYihiPF-C~~~--------C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~--~~~~iy~GGGTPs~l~ 85 (395) T Consensus 16 kV~Ki~~~gGF~CPNRDGT~G~GGCtfC~~a~~~~f~~~~~~~-~~~~~~~i~~~~~~~~k~G~kkf~aYFQ~yTnTYAp 94 (307) T TIGR01212 16 KVFKITLHGGFSCPNRDGTIGRGGCTFCNDASKPSFADEVTQA-RIPIKEQIKKRKKKYKKDGIKKFIAYFQAYTNTYAP 94 (307) T ss_pred CEEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHH-HHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHH T ss_conf 4499986457887788870025772521788888524510235-446899999999765315731578997388765002 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHH---CCCC-CEEEECCCCCCHHHHHHHCCCCCHHHHHHH Q ss_conf 999999997664047644433211332104100234776630---3454-114323433201345542244313478999 Q gi|254780628|r 86 PQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRK---AGVN-RISLGVQSLEEQSLRFLGRNHNASEAIAAI 161 (395) Q Consensus 86 ~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~---~Gv~-RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~ 161 (395) T Consensus 95 ve~Lk~~y~~aL~~---~~vVGlsvgTRPDC~P~~VLDlL~ey~~~GyevWvELGLQtah~~TL~~INRgHd~~~y~~a~ 171 (307) T TIGR01212 95 VEVLKEMYEQALSE---DDVVGLSVGTRPDCVPDEVLDLLAEYKERGYEVWVELGLQTAHDRTLKKINRGHDFACYVDAV 171 (307) T ss_pred HHHHHHHHHHHHHH---CCEEEEEECCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHH T ss_conf 68888999987632---780577536889877478999999995497589996053565589999851437878999999 Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHH Q ss_conf 98630244433321000258543221112788753180012346468825960001454498021103567889998655 Q gi|254780628|r 162 HLARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQS 241 (395) Q Consensus 162 ~~~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e 241 (395) T Consensus 172 ~~~~krGikVC~H~I~GLPgE~~~~~~eTak~~~~l~vdGiKiH~LhvvkGt~m~k~Y~~G~~~~l~~e~Y~---~~~~d 248 (307) T TIGR01212 172 KRARKRGIKVCSHVILGLPGEDREEMLETAKIVASLDVDGIKIHPLHVVKGTKMAKQYEKGELKTLSLEEYI---SLACD 248 (307) T ss_pred HHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEECCHHHHHHHCCCEEECCHHHHH---HHHHH T ss_conf 999765988999987428988888999999999837988488720178735757887545740104767799---99999 Q ss_pred HHHH Q ss_conf 7887 Q gi|254780628|r 242 ITSA 245 (395) Q Consensus 242 ~L~~ 245 (395) T Consensus 249 ~le~ 252 (307) T TIGR01212 249 FLEH 252 (307) T ss_pred HHHC T ss_conf 9850 |
This family lacks the GNAT acetyltransferase domain.. |
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ | Back alignment and domain information |
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Probab=99.93 E-value=4.9e-25 Score=186.02 Aligned_cols=187 Identities=16% Similarity=0.208 Sum_probs=155.1 Q ss_pred CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 11837657730245788662889999999999999876189505899962888887899999999976640476444332 Q gi|254780628|r 28 CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVE 107 (395) Q Consensus 28 C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e 107 (395) T Consensus 206 CP~~C~FC~~p~~~-~Gr~~R~RSpe~VvdEIe~l~~~y~g--v~~~~f~DD~Ft~-~~~r~~eic~~i~~-l~i~---- 276 (472) T TIGR03471 206 CPSKCTFCLWPQTV-GGHRYRTRSAESVIEEVKYALENFPE--VREFFFDDDTFTD-DKPRAEEIARKLGP-LGVT---- 276 (472) T ss_pred CCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHCCC--CCEEEEECCCCCC-CHHHHHHHHHHHHH-CCCE---- T ss_conf 88779687882102-68866215999999999999986689--7589994776678-99999999999987-6982---- Q ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 11332104100234776630345411432343320134554224431347899998630244433321000258543221 Q gi|254780628|r 108 ITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQW 187 (395) Q Consensus 108 ~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~ 187 (395) T Consensus 277 W~~~~Rv~-~d~E~l~~mk~AGc~~v~~GiESgsq~iL~~i~K~~t~e~~~~av~~~k~~GI~v~~~FIiG~PgET~Eti 355 (472) T TIGR03471 277 WSCNARAN-VDYETLKVMKENGLRLLLVGYESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETI 355 (472) T ss_pred EEEEEECC-CCHHHHHHHHHHCCEEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHH T ss_conf 78763034-89999999998398489980375899999985389989999999998875798799999877999988999 Q ss_pred CCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCC Q ss_conf 1127887531800123464688259600014544980 Q gi|254780628|r 188 EMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDL 224 (395) Q Consensus 188 ~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~ 224 (395) T Consensus 356 ~~Ti~fa~~l~~d~~~~si~tPyPGT~ly~~~~e~g~ 392 (472) T TIGR03471 356 RKTIDFAKELNPHTIQVSLAAPYPGTELYDQAKQNGW 392 (472) T ss_pred HHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHCCC T ss_conf 9999999975989089987258899699999998398 |
One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift. |
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family; InterPro: IPR005910 Histone acetylation is carried out by a class of enzymes known as histone acetyltransferases (HATs), which catalyse the transfer of an acetyl group from acetyl-CoA to the lysine E-amino groups on the N-terminal tails of histones | Back alignment and domain information |
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Probab=99.92 E-value=2.7e-24 Score=181.11 Aligned_cols=239 Identities=21% Similarity=0.347 Sum_probs=179.9 Q ss_pred HHHHHHHHCCCCCCCEE-E----EEECCC-CCC-C-----CCCC------CCE----EEECCCCCCH-------HHHHHH Q ss_conf 37899884288988549-9----994065-118-3-----7657------730----2457886628-------899999 Q gi|254780628|r 4 LSAYENNMTGQGSNSLG-V----YVHWPF-CVK-K-----CPYC------DFN----SHVRRYKVGQ-------ENFIQS 54 (395) Q Consensus 4 ~~~~~~~~~~~~~~~l~-l----YihiPF-C~~-~-----C~yC------~f~----~~~~~~~~~~-------~~y~~~ 54 (395) T Consensus 49 ~~~l~~~Lr~KPvRTiSGVAVVAvMTsP~~CPHGkytGniC~yCPGG~~s~f~~spQSYTG~EPAA~Rg~~~~YDPY~q~ 128 (573) T TIGR01211 49 KKKLEDILRKKPVRTISGVAVVAVMTSPERCPHGKYTGNICLYCPGGPDSDFENSPQSYTGYEPAALRGRQYDYDPYEQV 128 (573) T ss_pred HHHHHHHHCCCCCEEECCCCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHH T ss_conf 67888775169960115752001226216888854217876426878866667884875567658999765078856999 Q ss_pred H--HHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHC---CC----------------CCCCC------- Q ss_conf 9--99999998761895058999628888878999999999766404---76----------------44433------- Q gi|254780628|r 55 F--LTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKN---WT----------------VSSNV------- 106 (395) Q Consensus 55 l--~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~---~~----------------~~~~~------- 106 (395) T Consensus 129 ~~Rl~QL~~iGH--pvdKVElI-~MGGTFpArd~~Yqe~Fv~~~l~Aln~F~yfkd~Dnleeklvr~~~~g~~~~~~e~~ 205 (573) T TIGR01211 129 TARLEQLEQIGH--PVDKVELI-IMGGTFPARDLDYQEWFVKRCLNALNDFDYFKDIDNLEEKLVRAELKGNSTEVKEDD 205 (573) T ss_pred HHHHHHHHHCCC--CCCCEEEE-EECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC T ss_conf 999999987189--81617888-307877788876778999999973166653467124677887630576544336887 Q ss_pred -----------------C---------------CCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCC Q ss_conf -----------------2---------------11332104100234776630345411432343320134554224431 Q gi|254780628|r 107 -----------------E---------------ITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNA 154 (395) Q Consensus 107 -----------------e---------------~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~ 154 (395) T Consensus 206 ~fkraWert~~~~y~~LE~a~r~NE~~~~RcVG~T~ETRPDyc~e~~id~ML~~G~TrVElGVQtiy~~i~~~~kRGH~V 285 (573) T TIGR01211 206 EFKRAWERTAEKDYVYLEEAIRKNETSKVRCVGLTIETRPDYCREEEIDRMLKLGATRVELGVQTIYNDILERIKRGHTV 285 (573) T ss_pred CHHHHHHHHCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCEEEEEEECCHHHHHHHHCCCCCH T ss_conf 32346655304772136889962467686434677215889888688999983598489975207268999983789858 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH---CCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHH Q ss_conf 347899998630244433321000258543221112788753---18001234646882596000145449802110356 Q gi|254780628|r 155 SEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRALS---YAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENV 231 (395) Q Consensus 155 ~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~---l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~ 231 (395) T Consensus 286 ~~~~~at~llrDaG~KV~yH~MPGlPGs~fErDl~~Fr~~Fedp~FkPDmLKIYPTLV~rGT~LY~lWk~G~Y~PY~~eE 365 (573) T TIGR01211 286 RDVVEATRLLRDAGLKVVYHIMPGLPGSSFERDLKMFREIFEDPRFKPDMLKIYPTLVTRGTELYELWKRGEYKPYTTEE 365 (573) T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEECCEEEECCCCHHHHHHCCCCCCCCHHH T ss_conf 99999987766504622031175333566356899998862687989786156671023476116888678998776789 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 78899986557887 Q gi|254780628|r 232 AVDLYNLTQSITSA 245 (395) Q Consensus 232 ~~~~~~~a~e~L~~ 245 (395) T Consensus 366 aveLiv~~~~~~P~ 379 (573) T TIGR01211 366 AVELIVEIKKIMPK 379 (573) T ss_pred HHHHHHHHHHHCCC T ss_conf 99999999973897 |
Early indication that HATs were involved in transcription came from the observation that in actively transcribed regions of chromatin, histones tend to be hyperacetylated, whereas in transcriptionally silent regions histones are hypoacetylated. The histone acetyltransferases are divided into five families. These include the Gcn5-related acetyltransferases (GNATs); the MYST (for 'MOZ, Ybf2/Sas3, Sas2 and Tip60)-related HATs; p300/CBP HATs; the general transcription factor HATs, which include the TFIID subunit TAF250; and the nuclear hormone-related HATs SRC1 and ACTR (SRC3). The GCN5-related N-acetyltransferase superfamily includes such enzymes as the histone acetyltransferases GCN5 and Hat1, the elongator complex subunit Elp3, the mediator-complex subunit Nut1, and Hpa2 . Many GNATs share several functional domains, including an N-terminal region of variable length, an acetyltransferase domain that encompasses the conserved sequence motifs described above, a region that interacts with the coactivator Ada2, and a C-terminal bromodomain that is believed to interact with acetyl-lysine residues. Members of the GNAT family are important for the regulation of cell growth and development. In mice, knockouts of Gcn5L are embryonic lethal. Yeast Gcn5 is needed for normal progression through the G2M boundary and mitotic gene expression. The importance of GNATs is probably related to their role in transcription and DNA repair. The yeast GCN5 (yGCN5) transcriptional coactivator functions as a histone acetyltransferase (HAT) to promote transcriptional activation. The crystal structure of the yeast histone acetyltransferase Hat1-acetyl coenzyme A (AcCoA) shows that Hat1 has an elongated, curved structure, and the AcCoA molecule is bound in a cleft on the concave surface of the protein, marking the active site of the enzyme. A channel of variable width and depth that runs across the protein is probably the binding site for the histone substrate . The central protein core associated with AcCoA binding that appears to be structurally conserved among a superfamily of N-acetyltransferases, including yeast histone acetyltransferase 1 and Serratia marcescens aminoglycoside 3-N-acetyltransferase . The Saccharomyces cerevisiae member YPL086C has been characterised in vitro as an N-terminal acetyltransferase (2.3.1.48 from EC) for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases. In vivo, ELP3 gene deletion confers typical ELP phenotypes such as slow growth adaptation, slow gene activation, and temperature sensitivity. This suggests a role for the proteins as novel, tightly RNAPII-associated histone acetyltransferases in transcription of DNA packaged in chromatin .. |
>TIGR00089 TIGR00089 RNA modification enzyme, MiaB family; InterPro: IPR005839 This entry represents a family defined on the basis of sequence similarity | Back alignment and domain information |
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Probab=99.92 E-value=2.2e-24 Score=181.69 Aligned_cols=194 Identities=19% Similarity=0.236 Sum_probs=150.2 Q ss_pred EEEEEECCC-CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEE-----EEEE-CCCCCCCCCHHH-HH Q ss_conf 499994065-118376577302457886628899999999999998761895058-----9996-288888789999-99 Q gi|254780628|r 19 LGVYVHWPF-CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSIS-----SIFF-GGGTPSLIEPQN-IA 90 (395) Q Consensus 19 l~lYihiPF-C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~-----~iy~-GGGTPs~l~~~~-l~ 90 (395) T Consensus 153 ~~a~~~I~~GC~~~CtyC---ivP~~RG~~rSr~~e~Il~E~~~Lv~~-G~kEi~L~Gqnv~~YgG~D~~~---~~~~La 225 (455) T TIGR00089 153 TRAFVKIQEGCDKFCTYC---IVPYTRGRERSRPPEDILEEVKELVSK-GVKEITLLGQNVNAYGGKDLEG---KTNSLA 225 (455) T ss_pred EEEEEEECCCCCCCCCEE---EECCCCCEECCCCHHHHHHHHHHHHHC-CCEEEEEEEEEECCCCCCCCCC---CCCCHH T ss_conf 389998402658697768---813426600135889999999999846-9809999988525624778888---976479 Q ss_pred HHHHHHHH-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHC--C--CCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHH Q ss_conf 99976640-476444332113321041002347766303--4--541143234332013455422443134789999863 Q gi|254780628|r 91 LILDGIAK-NWTVSSNVEITIEANPSSVEVNNFQGYRKA--G--VNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLAR 165 (395) Q Consensus 91 ~ll~~i~~-~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~--G--v~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~ 165 (395) T Consensus 226 ~LL~~l~~ki~G~~RIR~~~--~hP~~~~d~li~~~~~~~~~~v~~~lHlPvQSGSd~iLK~M~R~Y~~e~~~~~~~k~r 303 (455) T TIGR00089 226 DLLRELSKKIDGIERIRFTS--SHPDDVTDDLIELIAENKDPKVCKHLHLPVQSGSDRILKRMNRKYTREEYLEIVEKLR 303 (455) T ss_pred HHHHHHHHHCCCCEEEEEEC--CCCCCCCHHHHHHHHHCCCCCCCCEECCCEECCCHHHHHCCCCCCCHHHHHHHHHHHH T ss_conf 99999840059702688604--6703268789999985078853520221266188699970378988899999999999 Q ss_pred CCCCCCC--CCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHC Q ss_conf 0244433--3210002585432211127887531800123464688259600014544 Q gi|254780628|r 166 NIFPRMS--FDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKD 221 (395) Q Consensus 166 ~~~~~v~--iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~ 221 (395) T Consensus 304 ~~~P~~~i~TDiIVGFPGETeEdF~~Tl~l~~ev~F~~~~~F~YSpR~gTpAa~~~d~ 361 (455) T TIGR00089 304 AKVPDAAITTDIIVGFPGETEEDFEETLDLVEEVKFDKLHSFIYSPRPGTPAADMKDQ 361 (455) T ss_pred HHCCCCEEECCEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCC T ss_conf 8478817750268828999889999999998523844343120578888746356788 |
Most of these proteins are not yet characterised, but those that are include CDK5 regulatory subunit-associated protein 1, which specifically inhibits CDK5 activation by CDK5R1 . MiaB, a tRNA modification enzyme . The size of proteins in this entry ranges from 47 to 61 kDa and they contain six conserved cysteines, three of which are clustered. . |
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
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Probab=99.90 E-value=3.2e-22 Score=167.36 Aligned_cols=223 Identities=18% Similarity=0.227 Sum_probs=177.0 Q ss_pred CCCCEEEEEECCC-CCCC--------CCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCC Q ss_conf 9885499994065-1183--------765773024578866288999999999999987618950589996288888789 Q gi|254780628|r 15 GSNSLGVYVHWPF-CVKK--------CPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIE 85 (395) Q Consensus 15 ~~~~l~lYihiPF-C~~~--------C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~ 85 (395) T Consensus 20 g~Kv~Kv~ld~GF~CPNRDGti~rGGCtFC~~~g~~d~~~~~~~~i~~Q~~~q~~~~~kK~~~~k-yiaYFQ~~TNTyAp 98 (312) T COG1242 20 GEKVFKVTLDGGFSCPNRDGTIGRGGCTFCSVAGSGDFAGQPKISIAEQFKEQAERMHKKWKRGK-YIAYFQAYTNTYAP 98 (312) T ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-EEEEEECCCCCCCC T ss_conf 87169985357778999999626786465067788763458667789999999999987515786-79998146666675 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC----CEEEECCCCCCHHHHHHHCCCCCHHHHHHH Q ss_conf 9999999976640476444332113321041002347766303454----114323433201345542244313478999 Q gi|254780628|r 86 PQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVN----RISLGVQSLEEQSLRFLGRNHNASEAIAAI 161 (395) Q Consensus 86 ~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~----RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~ 161 (395) T Consensus 99 vevLre~ye~aL~~~~---VVGLsIgTRPDClpd~VldlL~e~-~~r~~vWvELGLQT~h~~Tlk~iNRgHd~~~y~dav 174 (312) T COG1242 99 VEVLREMYEQALSEAG---VVGLSIGTRPDCLPDDVLDLLAEY-NKRYEVWVELGLQTAHDKTLKRINRGHDFACYVDAV 174 (312) T ss_pred HHHHHHHHHHHHCCCC---EEEEEECCCCCCCCHHHHHHHHHH-HHHEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHH T ss_conf 9999999999727588---047750589988818999999998-644578877453055589999876245449999999 Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHH Q ss_conf 98630244433321000258543221112788753180012346468825960001454498021103567889998655 Q gi|254780628|r 162 HLARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQS 241 (395) Q Consensus 162 ~~~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e 241 (395) T Consensus 175 ~r~rkrgIkvc~HiI~GLPgE~~~~mleTak~v~~~~v~GIKlH~LhvvkgT~m~k~Y~~G~l~~ls~eeYv---~~~~d 251 (312) T COG1242 175 KRLRKRGIKVCTHLINGLPGETRDEMLETAKIVAELGVDGIKLHPLHVVKGTPMEKMYEKGRLKFLSLEEYV---ELVCD 251 (312) T ss_pred HHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEECCCHHHHHHHCCCCEECCHHHHH---HHHHH T ss_conf 999974974988884079888889999999999866875388887888638759999971886554599999---99999 Q ss_pred HHHH Q ss_conf 7887 Q gi|254780628|r 242 ITSA 245 (395) Q Consensus 242 ~L~~ 245 (395) T Consensus 252 ~le~ 255 (312) T COG1242 252 QLEH 255 (312) T ss_pred HHHH T ss_conf 9974 |
|
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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Probab=99.88 E-value=3.2e-22 Score=167.36 Aligned_cols=182 Identities=20% Similarity=0.260 Sum_probs=140.6 Q ss_pred CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEE-----EEEECCCCCCCCCHHHHHHHHHHHHHCCCC Q ss_conf 118376577302457886628899999999999998761895058-----999628888878999999999766404764 Q gi|254780628|r 28 CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSIS-----SIFFGGGTPSLIEPQNIALILDGIAKNWTV 102 (395) Q Consensus 28 C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~-----~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~ 102 (395) T Consensus 154 Cn~~CtfC---iiP~~RG~~rSr~~e~Il~ev~~Lv~~-G~kEI~L~gqdv~aYG~D~~~~--~~~l~~Ll~~l~~I~G~ 227 (437) T COG0621 154 CNKFCTFC---IIPYARGKERSRPPEDILKEVKRLVAQ-GVKEIVLTGQDVNAYGKDLGGG--KPNLADLLRELSKIPGI 227 (437) T ss_pred CCCCCCEE---EEECCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEEEEEEHHHCCCCCCCC--CCCHHHHHHHHHCCCCC T ss_conf 67888806---405367875577989999999999988-9749999988110104467777--66899999999607991 Q ss_pred CCCCCCCCC-CCCCCCHHHHHHHHHHC--CCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCC--CCCCCC Q ss_conf 443321133-21041002347766303--4541143234332013455422443134789999863024443--332100 Q gi|254780628|r 103 SSNVEITIE-ANPSSVEVNNFQGYRKA--GVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRM--SFDLIY 177 (395) Q Consensus 103 ~~~~e~t~E-~~P~~~~~~~l~~l~~~--Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v--~iDli~ 177 (395) T Consensus 228 ~---riR~~~~~P~~~~d~lIe~~~~~~kv~~~lHlPvQsGsd~ILk~M~R~yt~e~~~~~i~k~R~~~Pd~~i~tDiIV 304 (437) T COG0621 228 E---RIRFGSSHPLEFTDDLIEAIAETPKVCPHLHLPVQSGSDRILKRMKRGYTVEEYLEIIEKLRAARPDIAISTDIIV 304 (437) T ss_pred E---EEEEECCCCHHCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEECCEEE T ss_conf 0---8999358800118899999865784143446755569879999737876799999999999986898567526799 Q ss_pred CCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHH Q ss_conf 02585432211127887531800123464688259600014 Q gi|254780628|r 178 ALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKM 218 (395) Q Consensus 178 GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~ 218 (395) T Consensus 305 GFPgETEedFe~tl~lv~e~~fd~~~~F~YSpRpGTpAa~~ 345 (437) T COG0621 305 GFPGETEEDFEETLDLVEEVRFDRLHVFKYSPRPGTPAALM 345 (437) T ss_pred ECCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCC T ss_conf 79999999999999999974888785330489999821137 |
|
>TIGR01574 miaB-methiolase tRNA-i(6)A37 thiotransferase enzyme MiaB; InterPro: IPR006463 These sequences are homologs of the MiaB enzyme responsible for the modification of the isopentenylated adenine-37 base of most bacterial and eukaryotic tRNAs that read codons beginning with uracil (all except tRNA(I,V) Ser) | Back alignment and domain information |
---|
Probab=99.87 E-value=1.5e-21 Score=162.99 Aligned_cols=203 Identities=20% Similarity=0.275 Sum_probs=154.1 Q ss_pred EEEEEECCC-CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEE------E----E--CCCCCCCCC Q ss_conf 499994065-11837657730245788662889999999999999876189505899------9----6--288888789 Q gi|254780628|r 19 LGVYVHWPF-CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSI------F----F--GGGTPSLIE 85 (395) Q Consensus 19 l~lYihiPF-C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i------y----~--GGGTPs~l~ 85 (395) T Consensus 155 ~~sfv~Im~GCdkfCtYC---iVPYtRG~E~Sr~~~~Il~Ev~~l~~~-G~kEi~LLGQNVN~YRG~~frne~-~--~~~ 227 (456) T TIGR01574 155 FKSFVNIMEGCDKFCTYC---IVPYTRGEEISRPLDDILQEVQKLAEK-GVKEITLLGQNVNAYRGKDFRNEG-K--TVD 227 (456) T ss_pred CEEEEECCCCCCCCCCEE---ECCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEECCCCCCCCCCCCCCCCC-C--EEC T ss_conf 225240314768854546---615304820125744699999999865-864874036530111587522588-6--736 Q ss_pred HHHHHHHHHHHH----HCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC--CCCEEEECCCCCCHHHHHHHCCCCCHHHHH Q ss_conf 999999997664----04764443321133210410023477663034--541143234332013455422443134789 Q gi|254780628|r 86 PQNIALILDGIA----KNWTVSSNVEITIEANPSSVEVNNFQGYRKAG--VNRISLGVQSLEEQSLRFLGRNHNASEAIA 159 (395) Q Consensus 86 ~~~l~~ll~~i~----~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~G--v~RiS~GvQs~~~~~l~~~~R~~~~~~~~~ 159 (395) T Consensus 228 ---f~dLL~~l~rrCe~~~~i~RIRFts--SHP~~~~D~liev~a~~~~l~~~~HLPvQsGS~~vLk~M~R~Yt~e~Y~~ 302 (456) T TIGR01574 228 ---FADLLRELARRCEVKDGIERIRFTS--SHPKDFDDDLIEVLAKEPKLCKLLHLPVQSGSSEVLKLMKRKYTRERYLE 302 (456) T ss_pred ---HHHHHHHHHHHCCHHHCCCCEEECC--CCCCCCCHHHHHHHHCCCCEEEEECCCCEECHHHHHHHCCCCCCHHHHHH T ss_conf ---6999999987510221585113137--87876544687887378946666437520070799851077556899999 Q ss_pred HHHHHHCCCCCCC--CCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHH Q ss_conf 9998630244433--32100025854322111278875318001234646882596000145449802110356788999 Q gi|254780628|r 160 AIHLARNIFPRMS--FDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYN 237 (395) Q Consensus 160 ~~~~~~~~~~~v~--iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~ 237 (395) T Consensus 303 ~v~KLk~~~Pnv~lStDiivGFPGEt~edFE~Tl~l~~~V~Fd~~f~F~Ys~ReGTpAa~m~d~----vp~~~~~~RL~~ 378 (456) T TIGR01574 303 LVRKLKEAVPNVSLSTDIIVGFPGETEEDFEETLDLLREVEFDSAFSFIYSPREGTPAADMPDD----VPEEVKKERLQR 378 (456) T ss_pred HHHHHHHHCCCCEECCCEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCC----CCHHHHHHHHHH T ss_conf 9999987378712124536736877846689999998522624123344138676855678788----648999999999 |
Adenine-37 is next to the anticodon on the 3 side in these tRNAs, and lack of modification at this site leads to an increased spontaneous mutation frequency. Isopentenylated A-37 is modified by methylthiolation at position 2, either by MiaB alone or in concert with a separate methylase yet to be discovered (MiaC?) , , .. |
>cd01335 Radical_SAM Radical SAM superfamily | Back alignment and domain information |
---|
Probab=99.84 E-value=1.4e-20 Score=156.49 Aligned_cols=182 Identities=20% Similarity=0.284 Sum_probs=142.8 Q ss_pred CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCC Q ss_conf 51183765773024578866288999999999999987618950589996288888789999999997664047644433 Q gi|254780628|r 27 FCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNV 106 (395) Q Consensus 27 FC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~ 106 (395) T Consensus 6 GC~~~C~fC~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~--~~~~~l~~~~~~~---~~~ 75 (204) T cd01335 6 GCNLNCGFCSNPASKGRGPESP-PEIEEILDIVL----EAKERGVEVVILTGGEPLLYP--ELAELLRRLKKEL---PGF 75 (204) T ss_pred CCCCCCCCCCCCCCCCCCCCCC-CCHHHHHHHHH----HHHHCCCEEEEEECCCCCCCC--CCCHHHHHHHHCC---CCC T ss_conf 7385698799875479875667-88999999999----998759869997246766665--3210135455306---871 Q ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHH-CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC Q ss_conf 2113321041002347766303454114323433201345542-244313478999986302444333210002585432 Q gi|254780628|r 107 EITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLG-RNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMT 185 (395) Q Consensus 107 e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~-R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e 185 (395) T Consensus 76 ~i~~~t~~~~~~~~~l~~l~~~g~~~~~i~les~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~G~p~et~~ 155 (204) T cd01335 76 EISIETNGTLLTEELLKELKELGLDGVGVSLDSGDEEVADKIRGSGESFKERLEALKELREAGLGLSTTLLVGLGDEDEE 155 (204) T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHH T ss_conf 79998336547699987754037542222435689999999848899759999999999867998999999827999999 Q ss_pred CCCCCHHHHHHCC-CCCEEEEEEEEECCCEEHHH Q ss_conf 2111278875318-00123464688259600014 Q gi|254780628|r 186 QWEMELQRALSYA-VDHLSLYQLTIEKGTLFYKM 218 (395) Q Consensus 186 ~~~~~l~~~~~l~-p~~is~Y~l~i~~~t~l~~~ 218 (395) T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~p~~gt~~~~~ 189 (204) T cd01335 156 DDLEELELLAEFRSPDRVSLFRLLPEEGTPLELA 189 (204) T ss_pred HHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHC T ss_conf 9999999998518998898987662289803338 |
Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o |
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme; InterPro: IPR006467 This clade of sequences is closely related to MiaB, a modifier of isopentenylated adenosine-37 of certain eukaryotic and bacterial tRNAs (see IPR006463 from INTERPRO) | Back alignment and domain information |
---|
Probab=99.81 E-value=5.5e-20 Score=152.55 Aligned_cols=185 Identities=15% Similarity=0.236 Sum_probs=140.8 Q ss_pred CCCCCCCCCCEEEECCCC-CCHHHHHHHHHHHHHHHHHH-HCCCEEEEEEE---CCCCCCCCCHHHHHHHHHHHHH-CCC Q ss_conf 118376577302457886-62889999999999999876-18950589996---2888887899999999976640-476 Q gi|254780628|r 28 CVKKCPYCDFNSHVRRYK-VGQENFIQSFLTEMQWMRQL-TGPRSISSIFF---GGGTPSLIEPQNIALILDGIAK-NWT 101 (395) Q Consensus 28 C~~~C~yC~f~~~~~~~~-~~~~~y~~~l~~Ei~~~~~~-~~~~~~~~iy~---GGGTPs~l~~~~l~~ll~~i~~-~~~ 101 (395) T Consensus 220 Cn~~CsyC---~IP~~RGt~~RS~~~e~~~~~v~~Lv~~gy~EvVLTGvnlg~Yg~d~~~--~g~~L~~Ll~~i~~q~~g 294 (492) T TIGR01579 220 CNKFCSYC---IIPFARGTRSRSVPLEKILEQVKELVAKGYKEVVLTGVNLGSYGDDLGE--NGSSLAKLLEQILKQIPG 294 (492) T ss_pred CCCCCCCC---CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCC--CCCCHHHHHHHHHHHCCC T ss_conf 89884410---1403378976416678999999999737755999840014445688876--676089999999864688 Q ss_pred CCCCCCCCCC-CCCCCCHHHHHHHHHHC--CCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC--CCCCCCCCC Q ss_conf 4443321133-21041002347766303--454114323433201345542244313478999986302--444333210 Q gi|254780628|r 102 VSSNVEITIE-ANPSSVEVNNFQGYRKA--GVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI--FPRMSFDLI 176 (395) Q Consensus 102 ~~~~~e~t~E-~~P~~~~~~~l~~l~~~--Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~--~~~v~iDli 176 (395) T Consensus 295 ~~---RiRlSS~~p~~~~~~l~~l~~s~~~l~PHlHlsLQSGsd~vLkrM~R~Y~r~~~~~~v~~lr~~~p~~~~gtD~I 371 (492) T TIGR01579 295 IE---RIRLSSIDPEDIDEELLELIKSEKKLCPHLHLSLQSGSDRVLKRMRRKYTRDDFLKLVQKLRSVRPDYAFGTDVI 371 (492) T ss_pred CE---EEEECCCCHHHHCHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEE T ss_conf 34---676325776550489999973476416320000222773798424878876899999999985077630376037 Q ss_pred CCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHH Q ss_conf 00258543221112788753180012346468825960001454 Q gi|254780628|r 177 YALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHK 220 (395) Q Consensus 177 ~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~ 220 (395) T Consensus 372 VGFP~E~eedFq~t~~~~~~~~~~~~HiFpyS~R~~T~A~~m~~ 415 (492) T TIGR01579 372 VGFPGESEEDFQETLRIVKEIEFSGLHIFPYSARPGTPASAMDD 415 (492) T ss_pred EECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCC T ss_conf 40888988999999999852660213354268843281204787 |
Sequence alignments suggest that these sequences perform the same chemical transformation as MiaB, perhaps on a different (or differently modified) tRNA base substrate. This clade represents a subfamily that spans low GC Gram-positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium , , .. |
>COG1032 Fe-S oxidoreductase [Energy production and conversion] | Back alignment and domain information |
---|
Probab=99.79 E-value=3.4e-18 Score=140.69 Aligned_cols=190 Identities=19% Similarity=0.301 Sum_probs=136.2 Q ss_pred CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCC---EEEEEEECCCCCCCCCHHHHHHHHH-HHHHCCCCC Q ss_conf 118376577302457886628899999999999998761895---0589996288888789999999997-664047644 Q gi|254780628|r 28 CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPR---SISSIFFGGGTPSLIEPQNIALILD-GIAKNWTVS 103 (395) Q Consensus 28 C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~---~~~~iy~GGGTPs~l~~~~l~~ll~-~i~~~~~~~ 103 (395) T Consensus 208 Cp~~C~FC~~~~~~~~r~~~~----~~v~~ei~~~~~~~~~~~~~~~~~~f~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 282 (490) T COG1032 208 CPRGCRFCSITKHFKYRRRRP----ERVVEEIKELIEEGGKRVVFFVDDIFLYGSPA-LNDEKRFELLSLELIERGLRKG 282 (490) T ss_pred CCCCCCCCCCCCCCCCCCCCH----HHHHHHHHHHHHHHHHCCCEECCCEEECCCCC-CCHHHHHHHHHHHHHHHHCCCC T ss_conf 888998888861146005788----99999999999987321450235577447854-3416788887999998630467 Q ss_pred CCCCCCCC-CCCCCCH-HHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHH-HHHHHHCCCCCCCCCCCCCCC Q ss_conf 43321133-2104100-23477663034541143234332013455422443134789-999863024443332100025 Q gi|254780628|r 104 SNVEITIE-ANPSSVE-VNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIA-AIHLARNIFPRMSFDLIYALP 180 (395) Q Consensus 104 ~~~e~t~E-~~P~~~~-~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~-~~~~~~~~~~~v~iDli~GlP 180 (395) T Consensus 283 ~~~~~~~~~~r~d~~~~~~~~~~~~~~g~~~~~iG~Esgs~~~l~~~~k~~~~~~~~~~a~~~~~~~~~~~~~~~i~G~p 362 (490) T COG1032 283 CRVHISAPSLRADTVTDEELLKLLREAGLRRVYIGIESGSEELLKKINKGITTEEVLEEAVKIAKEHGLRVKLYFIVGLP 362 (490) T ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCC T ss_conf 60357523003343787999999876494369996589999999986147886888999999998679861799998279 Q ss_pred CCCCCCCCCC---HHHHHHCCCC-CEEEEEEEEECCCEEHHHHHCC Q ss_conf 8543221112---7887531800-1234646882596000145449 Q gi|254780628|r 181 KQTMTQWEME---LQRALSYAVD-HLSLYQLTIEKGTLFYKMHKDG 222 (395) Q Consensus 181 gqt~e~~~~~---l~~~~~l~p~-~is~Y~l~i~~~t~l~~~~~~~ 222 (395) T Consensus 363 get~ed~~~t~~~~~~~~~~~~~~~~~~~~~~p~p~t~~~~~~~~~ 408 (490) T COG1032 363 GETEEDVKETIELAKFIKKLGPKLYVSPSPFVPLPGTPLQEMPKLE 408 (490) T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCHHHCCCCC T ss_conf 9997999999999999987186745887641646988413224532 |
|
>PRK07094 biotin synthase; Provisional | Back alignment and domain information |
---|
Probab=99.76 E-value=2.9e-18 Score=141.09 Aligned_cols=205 Identities=15% Similarity=0.222 Sum_probs=155.4 Q ss_pred CCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCC Q ss_conf 06511837657730245788662889999999999999876189505899962888887899999999976640476444 Q gi|254780628|r 25 WPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSS 104 (395) Q Consensus 25 iPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~ 104 (395) T Consensus 46 Sn~C~edC~yC~~~~~----n~~~~rY~Ls-~eeI~~~A~~a~~~G~~~~~lqsG~~~~~~~e~~~~ii~~Ik~~~~--- 117 (323) T PRK07094 46 SNYCRRNCLYCGLRRS----NKNIKRYRLS-PEEILECAKKAYELGYGTIVLQSGEDPYYTDEKIADIIKEIKKELD--- 117 (323) T ss_pred CCCCCCCCCCCCCCCC----CCCCCCCCCC-HHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCC--- T ss_conf 6899999934787667----8997743799-9999999999998699889996489988669999999999860599--- Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC Q ss_conf 33211332104100234776630345411432343320134554224431347899998630244433321000258543 Q gi|254780628|r 105 NVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTM 184 (395) Q Consensus 105 ~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~ 184 (395) T Consensus 118 -l~i~l--SlG~l~~e~~~~Lk~AG~dry~~nlETs~~~~y~~i~p~~t~~~Rl~~l~~~k~~G~~v~sG~iiGlpGET~ 194 (323) T PRK07094 118 -VAITL--SLGERSYEEYKAWKEAGADRYLLRHETADRELYEKLHPGMSFENRIQCLKDLKELGYEVGSGFMVGLPGQTL 194 (323) T ss_pred -CEEEE--ECCCCCHHHHHHHHHCCCCEEECCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCH T ss_conf -45997--578799999999998597744124565698986775899998999999999998398104302779899999 Q ss_pred CCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC Q ss_conf 22111278875318001234646882596000145449802110356788999865578870 Q gi|254780628|r 185 TQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAH 246 (395) Q Consensus 185 e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~ 246 (395) T Consensus 195 edr~~~l~~LreL~~~~v~i~~fiP~~gTPl~~~~------~~~~~~~lr~iAl~Rli~P~a 250 (323) T PRK07094 195 EDLADDILFLKELDLDMIGIGPFIPHPDTPLADEK------GGSLELTLKVLALARLLLPDA 250 (323) T ss_pred HHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCC------CCCHHHHHHHHHHHHHHCCCC T ss_conf 99999999998379988677255179999988999------979999999999999978766 |
|
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type; InterPro: IPR006466 This clade of sequences is closely related to MiaB, a modifier of isopentenylated adenosine-37 of certain eukaryotic and bacterial tRNAs (see IPR006463 from INTERPRO) | Back alignment and domain information |
---|
Probab=99.72 E-value=4.2e-18 Score=140.03 Aligned_cols=186 Identities=18% Similarity=0.338 Sum_probs=130.3 Q ss_pred CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCE--EE---EEEECCCCCCC-CCHHHHHHHHHHHHHCCC Q ss_conf 1183765773024578866288999999999999987618950--58---99962888887-899999999976640476 Q gi|254780628|r 28 CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRS--IS---SIFFGGGTPSL-IEPQNIALILDGIAKNWT 101 (395) Q Consensus 28 C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~--~~---~iy~GGGTPs~-l~~~~l~~ll~~i~~~~~ 101 (395) T Consensus 154 C~~~CsYC--i~K~ARG~L~-S~PpEkiV~~ar~l~~~-G~kEI~iTs~DT~~YG~DiG~~kL-PeLL~~~~t~I~g~F~ 228 (487) T TIGR01578 154 CLGNCSYC--ITKIARGKLA-SYPPEKIVEKARELVAE-GAKEIWITSQDTAAYGKDIGERKL-PELLRRLITEIPGDFR 228 (487) T ss_pred CCCCCCEE--EEEEEECCCC-CCCCHHHHHHHHHHHHC-CCCEEEECCCCCCCCCCCCCCCCC-HHHHHHHHHHCCCCCE T ss_conf 35688754--6777644524-88722568999999970-531265134466634422376212-7999999862599327 Q ss_pred CCCCCCCCCCCCCCCCH---HHHHHHHHH-CC-CCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCC--CCCC Q ss_conf 44433211332104100---234776630-34-54114323433201345542244313478999986302444--3332 Q gi|254780628|r 102 VSSNVEITIEANPSSVE---VNNFQGYRK-AG-VNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPR--MSFD 174 (395) Q Consensus 102 ~~~~~e~t~E~~P~~~~---~~~l~~l~~-~G-v~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~--v~iD 174 (395) T Consensus 229 ~R----VGM-mnP~~~~~IldeL~~v~~~h~kV~kFLHlPvQSGsD~VL~~M~R~y~v~~f~~Iv~~FR~~~~~~tl~TD 303 (487) T TIGR01578 229 LR----VGM-MNPKNVLEILDELIEVFQSHDKVYKFLHLPVQSGSDSVLKEMKREYTVDDFEDIVEKFRERFPDLTLSTD 303 (487) T ss_pred EE----EEC-CCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCEEEEE T ss_conf 87----625-8876334788999999854882000115420158758897448565257789999999876268647300 Q ss_pred CCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCC Q ss_conf 1000258543221112788753180012346468825960001454498 Q gi|254780628|r 175 LIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGD 223 (395) Q Consensus 175 li~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~ 223 (395) T Consensus 304 iIvGFp~EtdddFE~T~~l~~k~RPe~In~~~fS~RpgT~Aa~~~~~~~ 352 (487) T TIGR01578 304 IIVGFPTETDDDFEETMELLRKYRPEKINVTKFSPRPGTEAAKMKRLDT 352 (487) T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHCCCCC T ss_conf 1671789883558999999998289834530246888871133058996 |
Sequence alignments suggest that this family of sequences perform the same chemical transformation as MiaB, perhaps on a different (or differently modified) tRNA base substrate. This clade represents a subfamily that spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this group of sequences , , .. |
>PRK06256 biotin synthase; Validated | Back alignment and domain information |
---|
Probab=99.63 E-value=3.7e-15 Score=120.55 Aligned_cols=178 Identities=15% Similarity=0.205 Sum_probs=133.1 Q ss_pred CCCCCCCCCCCEEEECCCCCCHHHH----HHHHHHHHHHHHHHHCCCEEEEEEECCCC-CCCCCHHHHHHHHHHHHHCCC Q ss_conf 5118376577302457886628899----99999999999876189505899962888-887899999999976640476 Q gi|254780628|r 27 FCVKKCPYCDFNSHVRRYKVGQENF----IQSFLTEMQWMRQLTGPRSISSIFFGGGT-PSLIEPQNIALILDGIAKNWT 101 (395) Q Consensus 27 FC~~~C~yC~f~~~~~~~~~~~~~y----~~~l~~Ei~~~~~~~~~~~~~~iy~GGGT-Ps~l~~~~l~~ll~~i~~~~~ 101 (395) T Consensus 66 ~C~edC~yCaqs~~~~~-~--~~~y~ll~~eeI~~~a~~a~~-~G~~~~--~lvtsg~~~~~~~~e~v~~~i~~Ik~~~~ 139 (325) T PRK06256 66 LCPEDCGYCSQSAGSSS-P--IYRYAWLDIEEIVEAAKEAIE-NGAGRF--CIVASGRGPSGREVDQVIEAVKAIKEETD 139 (325) T ss_pred CCCCCCCCCCCCCCCCC-C--CCCCCCCCHHHHHHHHHHHHH-CCCCEE--EEEEECCCCCHHHHHHHHHHHHHHHHCCC T ss_conf 88999962989076789-9--741278999999999999998-699889--99860458976789999999999862289 Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC Q ss_conf 44433211332104100234776630345411432343320134554224431347899998630244433321000258 Q gi|254780628|r 102 VSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPK 181 (395) Q Consensus 102 ~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPg 181 (395) T Consensus 140 l----~i--~~slG~l~~e~~~~LkeAGvd~y~~nlET-s~~~f~~i~~tht~~~Rl~ti~~a~~aGi~vcsG~i~Gl-G 211 (325) T PRK06256 140 L----EI--CACLGLLTEEQAERLKEAGVDRYNHNLET-SRSYFPNVVTTHTYEDRVDTCEMVKAAGIEPCSGGIIGM-G 211 (325) T ss_pred E----EE--EEECCCCCHHHHHHHHHCCCCEECCCCCC-CHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECC-C T ss_conf 3----68--87348899999999998699888666440-687638868998899999999999985996466437668-9 Q ss_pred CCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHH Q ss_conf 5432211127887531800123464688259600014 Q gi|254780628|r 182 QTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKM 218 (395) Q Consensus 182 qt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~ 218 (395) T Consensus 212 Et~edrve~l~~Lr~l~~~sipin~l~P~~gTpl~~~ 248 (325) T PRK06256 212 ETLEDRAEHAFFLKELDADSIPINFLNPIKGTPLEDL 248 (325) T ss_pred CCHHHHHHHHHHHHCCCCCEEECCCCEECCCCCCCCC T ss_conf 9989999999999719998895467010699866889 |
|
>PRK06267 hypothetical protein; Provisional | Back alignment and domain information |
---|
Probab=99.62 E-value=5.1e-15 Score=119.61 Aligned_cols=180 Identities=18% Similarity=0.258 Sum_probs=139.4 Q ss_pred EECC-CCCC--CCCCCCCEEEECCCCCCHHHHH---HHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHH Q ss_conf 9406-5118--3765773024578866288999---99999999998761895058999628888878999999999766 Q gi|254780628|r 23 VHWP-FCVK--KCPYCDFNSHVRRYKVGQENFI---QSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGI 96 (395) Q Consensus 23 ihiP-FC~~--~C~yC~f~~~~~~~~~~~~~y~---~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i 96 (395) T Consensus 31 IefsN~C~~~~dC~YCg~sa~~~k~k-~p~ryR~s~EeIl~~A~~~~~~--G--~kt~vLqsGed--yt~eel~~ii~~I 103 (324) T PRK06267 31 LFLGWYCNLGDPCKFCFMSTQKDKIK-DPLKARRRPESILAEAIIMKRI--G--WKLEFISGGYG--YTTEEINDIIEMI 103 (324) T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCC-CHHHHHCCHHHHHHHHHHHHHH--C--CCEEEEECCCC--CCHHHHHHHHHHH T ss_conf 88825358999987687777777776-4665528999999999999983--9--99799804877--9989999999999 Q ss_pred HHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCC Q ss_conf 40476444332113321041002347766303454114323433201345542244313478999986302444333210 Q gi|254780628|r 97 AKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLI 176 (395) Q Consensus 97 ~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli 176 (395) T Consensus 104 K~i~----~~avtL--SlG~~s~e~~~~~~~aG~~~~---lETan~~ly~~i~p~~s~e~Ri~~l~~lk~~G~e~gsG~i 174 (324) T PRK06267 104 SYIQ----GSKQYL--NVGIIDFENLNLNEIEGVVGA---VETVNPKLHEELCPGKPLDKIKEMLKKAKDLGLKTGITII 174 (324) T ss_pred HHHC----CCCEEE--ECCCCCHHHHHHHHHCCHHHH---HHCCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEE T ss_conf 8601----871697--158787999977766370142---4147988870279999889999999999983983200468 Q ss_pred CCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHH Q ss_conf 0025854322111278875318001234646882596000145 Q gi|254780628|r 177 YALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMH 219 (395) Q Consensus 177 ~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~ 219 (395) T Consensus 175 vGl-GET~ed~~~~~~~lkel~~d~I~I~~f~P~~gTP~en~p 216 (324) T PRK06267 175 LGL-GETEDDIELLLNLIEELNLDRITFYSLNPQKETIFEGKP 216 (324) T ss_pred EEC-CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCC T ss_conf 737-988999999999999769997632584589999889999 |
|
>KOG2535 consensus | Back alignment and domain information |
---|
Probab=99.58 E-value=1.2e-13 Score=110.49 Aligned_cols=207 Identities=23% Similarity=0.359 Sum_probs=146.1 Q ss_pred ECCCCCCCCCCC------CCE----EEECCCCCCH----H---HHHHHHHHHHHHHHHHHCC--CEEEEEEECCCCCCCC Q ss_conf 406511837657------730----2457886628----8---9999999999999876189--5058999628888878 Q gi|254780628|r 24 HWPFCVKKCPYC------DFN----SHVRRYKVGQ----E---NFIQSFLTEMQWMRQLTGP--RSISSIFFGGGTPSLI 84 (395) Q Consensus 24 hiPFC~~~C~yC------~f~----~~~~~~~~~~----~---~y~~~l~~Ei~~~~~~~~~--~~~~~iy~GGGTPs~l 84 (395) T Consensus 108 HIa~TGNiCVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRaRYdP~~QaR-~Rv~QLk~L-GHsvDKVE~i~M-GGTFMsL 184 (554) T KOG2535 108 HIAFTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYDPYLQAR-GRVEQLKQL-GHSVDKVEFIVM-GGTFMSL 184 (554) T ss_pred CEECCCCEEEECCCCCCCCCEEECCCCCCCCCCHHHHHHHHCCHHHHHH-HHHHHHHHH-CCCCCEEEEEEE-CCEEECC T ss_conf 4411377799889999765443024225878601888987339888888-899999983-776420689984-5622058 Q ss_pred CHHHHHHHHHHHHHCCC-----------------CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHH Q ss_conf 99999999976640476-----------------4443321133210410023477663034541143234332013455 Q gi|254780628|r 85 EPQNIALILDGIAKNWT-----------------VSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRF 147 (395) Q Consensus 85 ~~~~l~~ll~~i~~~~~-----------------~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~ 147 (395) T Consensus 185 Pe~YRd~FI~nLHdALSGhts~~v~EAv~yse~s~tKCiGiTIETRPDyC~~~Hl~~ML~YGCTRlEiGVQS~YEDVARD 264 (554) T KOG2535 185 PEEYRDYFIRNLHDALSGHTSANVEEAVKYSERSLTKCIGITIETRPDYCLKRHLSDMLTYGCTRLEIGVQSVYEDVARD 264 (554) T ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEECCHHHHHHHHHC T ss_conf 08889999998887742787547899987403123403568961277422126699998608713785100357776521 Q ss_pred HHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH---HCCCCCEEEEEEEEECCCEEHHHHHCCCC Q ss_conf 422443134789999863024443332100025854322111278875---31800123464688259600014544980 Q gi|254780628|r 148 LGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRAL---SYAVDHLSLYQLTIEKGTLFYKMHKDGDL 224 (395) Q Consensus 148 ~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~---~l~p~~is~Y~l~i~~~t~l~~~~~~~~~ 224 (395) T Consensus 265 TNRGHTV~aVce~F~laKDaG~KvV~HMMPdLPNVg~eRDieqF~E~FenP~FR~DGLKiYPTLVIrGTGLyELWKtgrY 344 (554) T KOG2535 265 TNRGHTVKAVCESFHLAKDAGFKVVAHMMPDLPNVGMERDIEQFKEYFENPAFRPDGLKIYPTLVIRGTGLYELWKTGRY 344 (554) T ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCEEEEECCCHHHHHHCCCC T ss_conf 66884689998776630036824502327899998504129999998319676878741222699934427988752886 Q ss_pred CCCHHHHHH Q ss_conf 211035678 Q gi|254780628|r 225 VLPSENVAV 233 (395) Q Consensus 225 ~~p~~~~~~ 233 (395) T Consensus 345 k~Y~p~~Lv 353 (554) T KOG2535 345 KSYSPSALV 353 (554) T ss_pred CCCCHHHHH T ss_conf 668989999 |
|
>TIGR01125 TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125; InterPro: IPR005840 This is a family of mainly hypothetical proteins of unknown function | Back alignment and domain information |
---|
Probab=99.57 E-value=2.5e-14 Score=115.10 Aligned_cols=190 Identities=16% Similarity=0.288 Sum_probs=143.3 Q ss_pred EEECCC-CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEE------EE-----EE-----ECCCCCCCC Q ss_conf 994065-11837657730245788662889999999999999876189505------89-----99-----628888878 Q gi|254780628|r 22 YVHWPF-CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSI------SS-----IF-----FGGGTPSLI 84 (395) Q Consensus 22 YihiPF-C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~------~~-----iy-----~GGGTPs~l 84 (395) T Consensus 167 YlKvaEGC~~~CaFCiIP~~rG~---~rSR~ie~i~~Ea~~L~~~Gv-KEiiliaQDTt~YG~DL~~R~~~~~~-e~--- 238 (475) T TIGR01125 167 YLKVAEGCNRRCAFCIIPSLRGK---LRSRPIEEILKEAKRLVDQGV-KEIILIAQDTTAYGVDLYTRESEFDG-EQ--- 238 (475) T ss_pred EEEECCCCCCCCCEECCCCCCCC---CCCCCHHHHHHHHHHHHHCCC-CEEEEEEEECCCCCCEEEECCCCCCC-HH--- T ss_conf 68700577898652136233677---677688889999999984398-38999964034776411110552240-14--- Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC-CC-CCEEEECCCCCCHHHHHHHCCCCCHHHHHHHH Q ss_conf 99999999976640476444332113321041002347766303-45-41143234332013455422443134789999 Q gi|254780628|r 85 EPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKA-GV-NRISLGVQSLEEQSLRFLGRNHNASEAIAAIH 162 (395) Q Consensus 85 ~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~-Gv-~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~ 162 (395) T Consensus 239 v~~~L~~Ll~~L~k~~G~~WiR--~~YlYP~~~~~~vI~~m~~~~KvLPYlDiPLQH~sd~ILK~M~R~~~~~~~~~~i~ 316 (475) T TIGR01125 239 VKSKLVELLEELGKLGGIYWIR--LLYLYPDELTDDVIDLMAEGPKVLPYLDIPLQHASDRILKLMRRPGSGEEQLDLIE 316 (475) T ss_pred HHHHHHHHHHHHHHCCCCCEEE--EEEECCCCCCHHHHHHHHCCCCCCCEECCCCCCCCHHHHHCCCCCCCHHHHHHHHH T ss_conf 5789999999740058962278--88760888866788998638980512254312387378742789963889999999 Q ss_pred HHHCCCCCCCC--CCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHC Q ss_conf 86302444333--210002585432211127887531800123464688259600014544 Q gi|254780628|r 163 LARNIFPRMSF--DLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKD 221 (395) Q Consensus 163 ~~~~~~~~v~i--Dli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~ 221 (395) T Consensus 317 ~~R~~~P~~vlRttfIVGFPGETEEdF~eL~~Fv~e~~~D~lG~F~YS~eEgt~A~~Lpd~ 377 (475) T TIGR01125 317 RLREKVPDAVLRTTFIVGFPGETEEDFQELLDFVEEGQFDRLGVFTYSPEEGTDAFALPDQ 377 (475) T ss_pred HHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHCCCCC T ss_conf 9997556617722468868899878899999998520215000020783236603507788 |
. |
>PRK08508 biotin synthase; Provisional | Back alignment and domain information |
---|
Probab=99.55 E-value=6.3e-14 Score=112.42 Aligned_cols=180 Identities=13% Similarity=0.174 Sum_probs=133.7 Q ss_pred CCCCCCCCCCCCCEEEECCCCCCHHHH----HHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCC Q ss_conf 065118376577302457886628899----9999999999987618950589996288888789999999997664047 Q gi|254780628|r 25 WPFCVKKCPYCDFNSHVRRYKVGQENF----IQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNW 100 (395) Q Consensus 25 iPFC~~~C~yC~f~~~~~~~~~~~~~y----~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~ 100 (395) T Consensus 14 SG~C~edC~yCaQs~~~---~t~i~~Y~l~~~eeIl~~A~~-a~~~G~~rf~lv-~sg~~~~~~~~e~v~~~v~~Ik~~~ 88 (279) T PRK08508 14 SGNCKEDCKYCTQSAHY---KADIKRYKRKEIEQIVQEAKM-ARANGALGFCLV-TAGRGLDDKKLEYVAKAAKAVKKEV 88 (279) T ss_pred CCCCCCCCCCCCCCCCC---CCCCCEECCCCHHHHHHHHHH-HHHCCCCEEEEE-EECCCCCHHHHHHHHHHHHHHHHCC T ss_conf 37999878644481767---999861078999999999999-997599768999-8236887544999999999986337 Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC Q ss_conf 64443321133210410023477663034541143234332013455422443134789999863024443332100025 Q gi|254780628|r 101 TVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALP 180 (395) Q Consensus 101 ~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlP 180 (395) T Consensus 89 ---~~l--~~c~slG~l~~e~~~~LkeAGvdrY~hNlET-s~~~y~~I~tThty~dRl~tl~~~k~aGl~vCsGgIiGl- 161 (279) T PRK08508 89 ---PGL--HLIACNGMASVEQLKELKKAGIFSYNHNLET-SKEFFPKICTTHSWEERFQTCLNAKEAGLGLCSGGIFGL- 161 (279) T ss_pred ---CCE--EEEEECCCCCHHHHHHHHHCCCCEECCCCCC-CHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEECCCEEEC- T ss_conf ---993--5761178579999999998397123076676-768757658998889999999999981994867854478- Q ss_pred CCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEH Q ss_conf 854322111278875318001234646882596000 Q gi|254780628|r 181 KQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFY 216 (395) Q Consensus 181 gqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~ 216 (395) T Consensus 162 GEt~edrve~a~~L~eL~~dsVPIN~liPi~GTPLe 197 (279) T PRK08508 162 GESWEDRISMLKSLASLSPHSTPINFFIPNPALPLD 197 (279) T ss_pred CCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCC T ss_conf 999899999999998389987515676589999888 |
|
>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion] | Back alignment and domain information |
---|
Probab=99.45 E-value=4.7e-12 Score=100.00 Aligned_cols=186 Identities=19% Similarity=0.349 Sum_probs=130.1 Q ss_pred CCCC----CCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHH----HC-CCEEEEEEEC----CCCCCCCCHHHHHHHHH Q ss_conf 1183----7657730245788662889999999999999876----18-9505899962----88888789999999997 Q gi|254780628|r 28 CVKK----CPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQL----TG-PRSISSIFFG----GGTPSLIEPQNIALILD 94 (395) Q Consensus 28 C~~~----C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~----~~-~~~~~~iy~G----GGTPs~l~~~~l~~ll~ 94 (395) T Consensus 193 C~r~~~ggCSFCt---Ep~~-g~~~~R~~e~Vv~EVkaLY~~GvrhFRlGRQ~difsy~~~~~g~e~P~PnPealekL~~ 268 (560) T COG1031 193 CPRRVSGGCSFCT---EPVR-GRPEFRPPEDVVEEVKALYRAGVRHFRLGRQADIFSYGADDNGGEVPRPNPEALEKLFR 268 (560) T ss_pred CCCCCCCCCCCCC---CCCC-CCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCEEEECCCCCCCCCCCCCHHHHHHHHH T ss_conf 7320368875416---7576-88465898999999999997060305615654101121565688799999899999999 Q ss_pred HHHHCCCCCCCCC-CCCC-CCCCCC------HHHHHHHHHHCCC--CCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHH Q ss_conf 6640476444332-1133-210410------0234776630345--4114323433201345542244313478999986 Q gi|254780628|r 95 GIAKNWTVSSNVE-ITIE-ANPSSV------EVNNFQGYRKAGV--NRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLA 164 (395) Q Consensus 95 ~i~~~~~~~~~~e-~t~E-~~P~~~------~~~~l~~l~~~Gv--~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~ 164 (395) T Consensus 269 Gir~~AP---~l~tLHiDNaNP~tIa~yp~eSr~i~K~ivky~TpGnVaAfGlEsaDp~V~r~NnL~~spEEvl~AV~iv 345 (560) T COG1031 269 GIRNVAP---NLKTLHIDNANPATIARYPEESREIAKVIVKYGTPGNVAAFGLESADPRVARKNNLNASPEEVLEAVEIV 345 (560) T ss_pred HHHHHCC---CCEEEEECCCCCHHHHCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHCCCCCCHHHHHHHHHHH T ss_conf 9986189---8726654589956441584889999999986479875543304546877876405669989999999999 Q ss_pred HCCCC----C------CCCCCCCCCCCCCCCCCCCCHHHHHHC-----CCCCEEEEEEEEECCCEEHHHHH Q ss_conf 30244----4------333210002585432211127887531-----80012346468825960001454 Q gi|254780628|r 165 RNIFP----R------MSFDLIYALPKQTMTQWEMELQRALSY-----AVDHLSLYQLTIEKGTLFYKMHK 220 (395) Q Consensus 165 ~~~~~----~------v~iDli~GlPgqt~e~~~~~l~~~~~l-----~p~~is~Y~l~i~~~t~l~~~~~ 220 (395) T Consensus 346 n~vG~~rg~nGlP~lLPGINfv~GL~GEtkeT~~ln~efL~~ild~gllvRRINIRqV~~fpgT~~~~~~~ 416 (560) T COG1031 346 NEVGGGRGYNGLPYLLPGINFVFGLPGETKETYELNYEFLKEILDEGLLVRRINIRQVVVFPGTPMWERGK 416 (560) T ss_pred HHHCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCCHHHHHH T ss_conf 98647667689842046620673388762777886499999997467468985203676327972466556 |
|
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase; InterPro: IPR011772 This entry respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions | Back alignment and domain information |
---|
Probab=99.43 E-value=4.1e-13 Score=107.03 Aligned_cols=183 Identities=19% Similarity=0.283 Sum_probs=135.8 Q ss_pred CCCCCCCCCCEE-EE-CCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHH-HCCCCCC Q ss_conf 118376577302-45-78866288999999999999987618950589996288888789999999997664-0476444 Q gi|254780628|r 28 CVKKCPYCDFNS-HV-RRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIA-KNWTVSS 104 (395) Q Consensus 28 C~~~C~yC~f~~-~~-~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~-~~~~~~~ 104 (395) T Consensus 207 CPf~C~fCsQwkFWrryR~RdP-kKf----vdEI~~L~r~---hgVgfF~LADEePT~-Nr~~f~efCEe~Iar~l~~~- 276 (506) T TIGR02026 207 CPFTCNFCSQWKFWRRYRARDP-KKF----VDEIEKLVRE---HGVGFFILADEEPTV-NRKKFQEFCEELIARNLQIK- 276 (506) T ss_pred CCCCCCCCCCCHHHHHHCCCCC-CHH----HHHHHHHHHH---CCCCEEEECCCCCCC-CHHHHHHHHHHHHHCCCCEE- T ss_conf 9765574575204454047886-138----9999999863---185336632788730-16899999999985789569- Q ss_pred CCCCCCCCCCCCC--HHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC Q ss_conf 3321133210410--02347766303454114323433201345542244313478999986302444333210002585 Q gi|254780628|r 105 NVEITIEANPSSV--EVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQ 182 (395) Q Consensus 105 ~~e~t~E~~P~~~--~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgq 182 (395) T Consensus 277 -v~~ginTRv~Di~RD~~~L~lyR~AGl~~i~LG~Eaaa~~~Ld~~rK~t~~~~nkeAIrLlr~h~i~~~A~fi~g~e~~ 355 (506) T TIGR02026 277 -VTWGINTRVTDIVRDADLLKLYRRAGLVHISLGTEAAAQLTLDRFRKETTVSENKEAIRLLRQHNILSEAQFIVGLENE 355 (506) T ss_pred -EEEEEEECCCHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCC T ss_conf -9996511130424028988888860603001210046653231213667524448999999761840210024254358 Q ss_pred CCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHC Q ss_conf 432211127887531800123464688259600014544 Q gi|254780628|r 183 TMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKD 221 (395) Q Consensus 183 t~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~ 221 (395) T Consensus 356 ~~~~~~etyr~~ldw~PD~~~w~~yTPwpft~lf~~l~d 394 (506) T TIGR02026 356 TDETLEETYRQLLDWDPDLANWLMYTPWPFTSLFEELSD 394 (506) T ss_pred CHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHCC T ss_conf 756899999997337833242145589876367886307 |
This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This entry identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologues of this gene are not found in plants which rely solely on the aerobic cyclase.; GO: 0016709 oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen NADH or NADPH as one donor and incorporation of one atom of oxygen, 0050661 NADP binding, 0015995 chlorophyll biosynthetic process. |
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
---|
Probab=99.42 E-value=5.4e-12 Score=99.58 Aligned_cols=195 Identities=13% Similarity=0.185 Sum_probs=139.0 Q ss_pred HHCCCCCC-CEE--EEEECCCCCCCCCCCCCEEEECCCCCCHHHHH---HHHHHHHHHHHHHHCCCEEEEEEECCCCCCC Q ss_conf 84288988-549--99940651183765773024578866288999---9999999999876189505899962888887 Q gi|254780628|r 10 NMTGQGSN-SLG--VYVHWPFCVKKCPYCDFNSHVRRYKVGQENFI---QSFLTEMQWMRQLTGPRSISSIFFGGGTPSL 83 (395) Q Consensus 10 ~~~~~~~~-~l~--lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~---~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~ 83 (395) T Consensus 40 R~~~~g~~V~l~~ii~iktg~c~edC~yC~qS~~~-~~~~~-~~~l~~~eeIle~Ak~a-k~~Ga~r~c~~aagr~~~-- 114 (335) T COG0502 40 RLHFDGNEVQLSTLISIKTGCCPEDCAYCSQSARY-KTGVK-ARKLMEVEEILEAAKKA-KAAGATRFCMGAAGRGPG-- 114 (335) T ss_pred HHHCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCC-CCCCC-HHHCCCHHHHHHHHHHH-HHCCCCEEEEEEECCCCC-- T ss_conf 98548885899888873348889889876001047-67982-33128999999999999-974995079987316777-- Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHH Q ss_conf 89999999997664047644433211332104100234776630345411432343320134554224431347899998 Q gi|254780628|r 84 IEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHL 163 (395) Q Consensus 84 l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~ 163 (395) T Consensus 115 ~~~~~i~~~v~~Vk~~~~l----e~c--~slG~l~~eq~~~L~~aGvd~ynhNLeT-s~~~y~~I~tt~t~edR~~tl~~ 187 (335) T COG0502 115 RDMEEVVEAIKAVKEELGL----EVC--ASLGMLTEEQAEKLADAGVDRYNHNLET-SPEFYENIITTRTYEDRLNTLEN 187 (335) T ss_pred CCHHHHHHHHHHHHHHCCC----HHH--HCCCCCCHHHHHHHHHCCHHHEECCCCC-CHHHHCCCCCCCCHHHHHHHHHH T ss_conf 4489999999999984692----864--0258799999999997181133035556-97887565789888899999999 Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCC-CCCEEEEEEEEECCCEEHH Q ss_conf 63024443332100025854322111278875318-0012346468825960001 Q gi|254780628|r 164 ARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYA-VDHLSLYQLTIEKGTLFYK 217 (395) Q Consensus 164 ~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~-p~~is~Y~l~i~~~t~l~~ 217 (395) T Consensus 188 vk~~Gi~vcsGgI~GlGEs~-eDri~~l~~L~~l~~pdsVPIn~l~P~~GTPle~ 241 (335) T COG0502 188 VREAGIEVCSGGIVGLGETV-EDRAELLLELANLPTPDSVPINFLNPIPGTPLEN 241 (335) T ss_pred HHHCCCCCCCCEEECCCCCH-HHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCC T ss_conf 99809850451276189988-8999999999718998854232103799986665 |
|
>COG1244 Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
---|
Probab=99.42 E-value=9e-12 Score=98.14 Aligned_cols=219 Identities=19% Similarity=0.286 Sum_probs=155.9 Q ss_pred CCCCCCCEEEEEECCCCC----CCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCH- Q ss_conf 288988549999406511----837657730245788662889999999999999876189505899962888887899- Q gi|254780628|r 12 TGQGSNSLGVYVHWPFCV----KKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEP- 86 (395) Q Consensus 12 ~~~~~~~l~lYihiPFC~----~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~- 86 (395) T Consensus 41 ~g~~~k~l~vILrT~GC~w~~~~gC~MCgY~~d~~~~~vs~E~l~~qfd~~~~k~~~~~-~~~~vkIFTSG---SFLD~~ 116 (358) T COG1244 41 RGYPGKSLTVILRTRGCRWYREGGCYMCGYPADSAGEPVSEENLINQFDEAYSKYEGKF-DEFVVKIFTSG---SFLDPE 116 (358) T ss_pred CCCCCCEEEEEEECCCCCEECCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC-CCCEEEEECCC---CCCCHH T ss_conf 89767559999826883222058722426554668898988999999999999722447-87549997156---658924 Q ss_pred ----HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC--CCC-CEEEECCCCCCHHH-HHHHCCCCCHHHH Q ss_conf ----999999976640476444332113321041002347766303--454-11432343320134-5542244313478 Q gi|254780628|r 87 ----QNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKA--GVN-RISLGVQSLEEQSL-RFLGRNHNASEAI 158 (395) Q Consensus 87 ----~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~--Gv~-RiS~GvQs~~~~~l-~~~~R~~~~~~~~ 158 (395) T Consensus 117 EVP~e~R~~Il~~is~~---~~v~~vvvESRpE~I~eE~l~e~~~il~gk~~EvaIGLETanD~ire~sINKGftF~df~ 193 (358) T COG1244 117 EVPREARRYILERISEN---DNVKEVVVESRPEFIREERLEEITEILEGKIVEVAIGLETANDKIREDSINKGFTFEDFV 193 (358) T ss_pred HCCHHHHHHHHHHHHHC---CCEEEEEEECCCHHCCHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCCHHHHH T ss_conf 48879999999997523---660278760471012789999999860895389997124474889987651388689999 Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCC----CCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHH Q ss_conf 999986302444333210002585----4322111278875318001234646882596000145449802110356788 Q gi|254780628|r 159 AAIHLARNIFPRMSFDLIYALPKQ----TMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVD 234 (395) Q Consensus 159 ~~~~~~~~~~~~v~iDli~GlPgq----t~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~ 234 (395) T Consensus 194 ~A~~~ir~~g~~vktYlllKP~FlSE~eAI~D~i~Si~-~~~~~~d~iSinptnVqKgTlvE~lw~~g~YRPPw------ 266 (358) T COG1244 194 RAAEIIRNYGAKVKTYLLLKPPFLSEKEAIEDVISSIV-AAKPGTDTISINPTNVQKGTLVEKLWRRGLYRPPW------ 266 (358) T ss_pred HHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHH-HHCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCH------ T ss_conf 99999997497515788831653476889999999999-74367875884454221310999999737878955------ Q ss_pred HHHHHHHHHHH Q ss_conf 99986557887 Q gi|254780628|r 235 LYNLTQSITSA 245 (395) Q Consensus 235 ~~~~a~e~L~~ 245 (395) T Consensus 267 -LWSivEVL~~ 276 (358) T COG1244 267 -LWSIVEVLRE 276 (358) T ss_pred -HHHHHHHHHH T ss_conf -7799999999 |
|
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit | Back alignment and domain information |
---|
Probab=99.35 E-value=1.4e-11 Score=96.83 Aligned_cols=216 Identities=13% Similarity=0.211 Sum_probs=142.3 Q ss_pred EEEEEECCC---CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEE-EECCCCCCCCCHHHHHHHHH Q ss_conf 499994065---11837657730245788662889999999999999876189505899-96288888789999999997 Q gi|254780628|r 19 LGVYVHWPF---CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSI-FFGGGTPSLIEPQNIALILD 94 (395) Q Consensus 19 l~lYihiPF---C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i-y~GGGTPs~l~~~~l~~ll~ 94 (395) T Consensus 37 f~~n~~In~TNiC~~~C~fCaF~r~p~~----~~ay~lt~-eei~~~~~~a~~~G~~Ei~~~gG~~P-el~~~~y~e~~r 110 (343) T TIGR03551 37 YVVNRNINFTNVCYGGCGFCAFRKRKGD----ADAYLLSL-EEIAERAAEAWKAGATEVCIQGGIHP-DLDGDFYLDILR 110 (343) T ss_pred EECCCCCCHHHHHHCCCCCCCCCCCCCC----CCCCCCCH-HHHHHHHHHHHHCCCCEEEEECCCCC-CCCHHHHHHHHH T ss_conf 9650062552687478976778668999----86600799-99999999999769968998258687-888889999999 Q ss_pred HHHHCCCCCCC-----CCCCC-CCCCCCCHHHHHHHHHHCCCCCE-EEECCCCCCHHHHHHHCC-CCCHHHHHHHHHHHC Q ss_conf 66404764443-----32113-32104100234776630345411-432343320134554224-431347899998630 Q gi|254780628|r 95 GIAKNWTVSSN-----VEITI-EANPSSVEVNNFQGYRKAGVNRI-SLGVQSLEEQSLRFLGRN-HNASEAIAAIHLARN 166 (395) Q Consensus 95 ~i~~~~~~~~~-----~e~t~-E~~P~~~~~~~l~~l~~~Gv~Ri-S~GvQs~~~~~l~~~~R~-~~~~~~~~~~~~~~~ 166 (395) T Consensus 111 ~ik~~~p~~~i~a~s~~Ei~~~a~~~g~~~~e~l~~Lk~AGl~s~pg~~aEil~~~vr~~i~P~K~~~~~wl~~~~~Ah~ 190 (343) T TIGR03551 111 AVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHK 190 (343) T ss_pred HHHHHCCCCEEEECCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHCCCCCCCCHHHHHHHHHHHHH T ss_conf 99874883010227899999999865999999999999758776788651321401241469698999999999999998 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC--CEEEE-EEEE-ECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 2444333210002585432211127887531800--12346-4688-259600014544980211035678899986557 Q gi|254780628|r 167 IFPRMSFDLIYALPKQTMTQWEMELQRALSYAVD--HLSLY-QLTI-EKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSI 242 (395) Q Consensus 167 ~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~--~is~Y-~l~i-~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~ 242 (395) T Consensus 191 lGi~ttatml~G-~gEt~eerv~hL~~lR~lqd~tggf~~fIp~~f~p~~t~l~~~~~~~--~~~~~~e~l~~iAvaRl~ 267 (343) T TIGR03551 191 LGIPTTATIMYG-HVETPEHWVDHLLILREIQEETGGFTEFVPLPFVHYNAPLYLKGMAR--PGPTGREDLKVHAIARIL 267 (343) T ss_pred CCCCCCCCEEEC-CCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHCCCC--CCCCHHHHHHHHHHHHHH T ss_conf 599720223427-88999999999999998620138826998136566788044415667--898579999999999997 Q ss_pred H Q ss_conf 8 Q gi|254780628|r 243 T 243 (395) Q Consensus 243 L 243 (395) T Consensus 268 l 268 (343) T TIGR03551 268 L 268 (343) T ss_pred H T ss_conf 0 |
This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases. |
>KOG2492 consensus | Back alignment and domain information |
---|
Probab=99.24 E-value=3e-10 Score=88.07 Aligned_cols=189 Identities=18% Similarity=0.306 Sum_probs=139.6 Q ss_pred CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHH-HC-----CCEEEE------EEECCCCCCCC--------CHH Q ss_conf 11837657730245788662889999999999999876-18-----950589------99628888878--------999 Q gi|254780628|r 28 CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQL-TG-----PRSISS------IFFGGGTPSLI--------EPQ 87 (395) Q Consensus 28 C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~-~~-----~~~~~~------iy~GGGTPs~l--------~~~ 87 (395) T Consensus 230 CdNMCtyC---iVpftrGreRsrpi~siv~ev~~L~~qG~KeVTLLGQNVNSyrD~s~~~~~~a~~~~~~~GFst~yK~K 306 (552) T KOG2492 230 CDNMCTYC---IVPFTRGRERSRPIESIVEEVKRLAEQGVKEVTLLGQNVNSYRDNSAVQFSSAVPTNLSPGFSTVYKPK 306 (552) T ss_pred CCCCCCEE---EEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCEEEECCC T ss_conf 45544558---775257754577468999999877654740366301454433444265632478666688840121146 Q ss_pred ----HHHHHHHHHHHCCCCCCCCCCCCC-CCCCCCHHHHHHHHHHCC--CCCEEEECCCCCCHHHHHHHCCCCCHHHHHH Q ss_conf ----999999766404764443321133-210410023477663034--5411432343320134554224431347899 Q gi|254780628|r 88 ----NIALILDGIAKNWTVSSNVEITIE-ANPSSVEVNNFQGYRKAG--VNRISLGVQSLEEQSLRFLGRNHNASEAIAA 160 (395) Q Consensus 88 ----~l~~ll~~i~~~~~~~~~~e~t~E-~~P~~~~~~~l~~l~~~G--v~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~ 160 (395) T Consensus 307 ~gGl~Fa~LLd~vs~~~P---emR~RFTSPHPKDfpdevl~li~~rdnickqihlPAqSgds~vLE~mrRgysreayl~l 383 (552) T KOG2492 307 QGGLRFAHLLDQVSRADP---EMRIRFTSPHPKDFPDEVLELIRDRDNICKQIHLPAQSGDSRVLEIMRRGYSREAYLEL 383 (552) T ss_pred CCCCCHHHHHHHHHHHCC---CEEEEECCCCCCCCHHHHHHHHHHCCCHHHEEECCCCCCCHHHHHHHHCCCCHHHHHHH T ss_conf 788408999998865286---50787369998777399999988175314224256668854899998705786765347 Q ss_pred HHHHHCCCCCCC--CCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCC Q ss_conf 998630244433--32100025854322111278875318001234646882596000145449 Q gi|254780628|r 161 IHLARNIFPRMS--FDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDG 222 (395) Q Consensus 161 ~~~~~~~~~~v~--iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~ 222 (395) T Consensus 384 v~~Irs~iPgVglssdfitgfCgeTeedhq~t~sLlrqVgYdv~~lFaysmR~kT~ay~r~~dd 447 (552) T KOG2492 384 VAHIRSMIPGVGLSSDFITGFCGETEEDHQYTVSLLRQVGYDVVFLFAYSMREKTRAYHRLKDD 447 (552) T ss_pred HHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCHHHHHHCCC T ss_conf 7778865888763232574056787277899999999855373666776531441455652366 |
|
>PRK07360 FO synthase subunit 2; Reviewed | Back alignment and domain information |
---|
Probab=99.11 E-value=1.9e-09 Score=82.80 Aligned_cols=218 Identities=14% Similarity=0.186 Sum_probs=135.8 Q ss_pred CEEEEEECCC---CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEE-ECCCCCCC----CCHHHH Q ss_conf 5499994065---118376577302457886628899999999999998761895058999-62888887----899999 Q gi|254780628|r 18 SLGVYVHWPF---CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIF-FGGGTPSL----IEPQNI 89 (395) Q Consensus 18 ~l~lYihiPF---C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy-~GGGTPs~----l~~~~l 89 (395) T Consensus 57 tfv~n~~In~TNiC~~~C~fCaF~r~p~~~~----ay~ls~-eEi~~~~~~a~~~G~tEv~~~gG~~P~l~~~~~~~~~y 131 (375) T PRK07360 57 TYVVNRNINFTNICEGHCGFCAFRRDKGDPG----AFWLDI-EEILEKAAEAVKAGATEVCIQGGLHPAADLNGSSLDFY 131 (375) T ss_pred EEEEEECCCHHHHHHCCCCCCCCCCCCCCCC----CEECCH-HHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHH T ss_conf 9982526656179870898273407889976----602789-99999999998658808997688783445464518999 Q ss_pred HHHHHHHHHCCCCCCC-----CCCCCCC-CCCCCHHHHHHHHHHCCCCCE-EEECCCCCCHHHHHHHCC-CCCHHHHHHH Q ss_conf 9999766404764443-----3211332-104100234776630345411-432343320134554224-4313478999 Q gi|254780628|r 90 ALILDGIAKNWTVSSN-----VEITIEA-NPSSVEVNNFQGYRKAGVNRI-SLGVQSLEEQSLRFLGRN-HNASEAIAAI 161 (395) Q Consensus 90 ~~ll~~i~~~~~~~~~-----~e~t~E~-~P~~~~~~~l~~l~~~Gv~Ri-S~GvQs~~~~~l~~~~R~-~~~~~~~~~~ 161 (395) T Consensus 132 ~~~~~~ik~~~p~i~i~a~s~~Ei~~~a~~~g~~~~e~l~~LkeAGl~s~pG~gaEil~~~vr~~i~P~K~~~~~wl~v~ 211 (375) T PRK07360 132 LEILKAIKAEFPGIHLHAFSPQEVQFAAREDGLSYEEVLKALKDAGLDSMPGTAAEILDDEVRRIICPEKITTAEWIEIV 211 (375) T ss_pred HHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHH T ss_conf 99999999868985564089999999886649988999999997698758887621034556646598988999999999 Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC--CCEEEE-EEEEE-CCCEEHHHHHCCCCCCCHHHHHHHHHH Q ss_conf 98630244433321000258543221112788753180--012346-46882-596000145449802110356788999 Q gi|254780628|r 162 HLARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYAV--DHLSLY-QLTIE-KGTLFYKMHKDGDLVLPSENVAVDLYN 237 (395) Q Consensus 162 ~~~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p--~~is~Y-~l~i~-~~t~l~~~~~~~~~~~p~~~~~~~~~~ 237 (395) T Consensus 212 ~~Ah~lGi~ttatmL~Gh~-Et~eerv~hL~~iR~lqd~tggf~efIp~~F~~~nt~l~~~~~~~-~~~~~~e-~lk~~A 288 (375) T PRK07360 212 KTAHKLGLPTTSTMMYGHI-ETPEHRIDHLSILREIQKETGGITEFIPLPFVHENAPLYERGRVK-RGAPGLE-DLKLYA 288 (375) T ss_pred HHHHHCCCCCCEEEECCCC-CCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCC-CCCCHHH-HHHHHH T ss_conf 9999829970100261898-999999999999998887449846997114358998500015678-8886698-999999 Q ss_pred HHHHHH Q ss_conf 865578 Q gi|254780628|r 238 LTQSIT 243 (395) Q Consensus 238 ~a~e~L 243 (395) T Consensus 289 vaRl~L 294 (375) T PRK07360 289 VSRIFL 294 (375) T ss_pred HHHHHH T ss_conf 999983 |
|
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
---|
Probab=99.09 E-value=8.5e-09 Score=78.41 Aligned_cols=212 Identities=14% Similarity=0.196 Sum_probs=133.4 Q ss_pred CCEEEEEECCC---CCCCCCCCCCEEEECCCCCCHHHHH---HHHHHHHHHHHHHHCCCEEEEEE-ECCCCCCCCCHHHH Q ss_conf 85499994065---1183765773024578866288999---99999999998761895058999-62888887899999 Q gi|254780628|r 17 NSLGVYVHWPF---CVKKCPYCDFNSHVRRYKVGQENFI---QSFLTEMQWMRQLTGPRSISSIF-FGGGTPSLIEPQNI 89 (395) Q Consensus 17 ~~l~lYihiPF---C~~~C~yC~f~~~~~~~~~~~~~y~---~~l~~Ei~~~~~~~~~~~~~~iy-~GGGTPs~l~~~~l 89 (395) T Consensus 55 vtyv~n~~in~TN~C~~~C~fCaF~~~~-~~~---~~y~Ls~eeI~~~~~~~~~~-G---~~Evli~gG~~p~-~~~~y~ 125 (370) T COG1060 55 VTYVVNRNINYTNICVNDCTFCAFYRKP-GDP---KAYTLSPEEILEEVREAVKR-G---ITEVLIVGGEHPE-LSLEYY 125 (370) T ss_pred EEEEEEECCCCCHHHCCCCCCCCCCCCC-CCC---CCCCCCHHHHHHHHHHHHHC-C---CEEEEEECCCCCC-CCHHHH T ss_conf 7999752578532331799726234578-886---55316999999999999875-9---8699980576877-436799 Q ss_pred HHHHHHHHHCCCCCCCC-------CCCCCCCCCCCH-HHHHHHHHHCCCCCEEE-ECCCCCCHHHHHHH-CCCCCHHHHH Q ss_conf 99997664047644433-------211332104100-23477663034541143-23433201345542-2443134789 Q gi|254780628|r 90 ALILDGIAKNWTVSSNV-------EITIEANPSSVE-VNNFQGYRKAGVNRISL-GVQSLEEQSLRFLG-RNHNASEAIA 159 (395) Q Consensus 90 ~~ll~~i~~~~~~~~~~-------e~t~E~~P~~~~-~~~l~~l~~~Gv~RiS~-GvQs~~~~~l~~~~-R~~~~~~~~~ 159 (395) T Consensus 126 ~~~~~~ik~~~p--~~~i~a~s~~ei~~~~~~~~~s~~E~l~~Lk~aGldsmpg~~aeil~e~vr~~~~p~K~~~~~wle 203 (370) T COG1060 126 EELFRTIKEEFP--DLHIHALSAGEILFLAREGGLSYEEVLKRLKEAGLDSMPGGGAEILSEEVRKIHCPPKKSPEEWLE 203 (370) T ss_pred HHHHHHHHHHCC--CHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCEEECHHHHHHHHCCCCCCHHHHHH T ss_conf 999999988573--034301678886798743688899999999976987674754114167799863798899999999 Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC--C-EEEEEEEEECC-CEEHHHHHCCCCCCCHHHHHHHH Q ss_conf 99986302444333210002585432211127887531800--1-23464688259-60001454498021103567889 Q gi|254780628|r 160 AIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYAVD--H-LSLYQLTIEKG-TLFYKMHKDGDLVLPSENVAVDL 235 (395) Q Consensus 160 ~~~~~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~--~-is~Y~l~i~~~-t~l~~~~~~~~~~~p~~~~~~~~ 235 (395) T Consensus 204 ~~~~Ah~lGI~~tatml~Gh-~E~~ed~~~hl~~ir~lQ~~~gg~~~fI~~~f~p~~~~--~~--~~~~~~~~~~~~l~~ 278 (370) T COG1060 204 IHERAHRLGIPTTATMLLGH-VETREDRIDHLEHIRDLQDETGGFQEFIPLRFRPENGP--LP--AEVVPEASLEQDLKA 278 (370) T ss_pred HHHHHHHCCCCCCCEEEEEE-CCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCC--CC--CCCCCCCCHHHHHHH T ss_conf 99999976998420347873-28889999999999999998589579980554578887--66--667898998999999 Q ss_pred HHHHHHHHH Q ss_conf 998655788 Q gi|254780628|r 236 YNLTQSITS 244 (395) Q Consensus 236 ~~~a~e~L~ 244 (395) T Consensus 279 iAiaRi~l~ 287 (370) T COG1060 279 IALARIFLD 287 (370) T ss_pred HHHHHHHCC T ss_conf 999999706 |
|
>PRK05927 hypothetical protein; Provisional | Back alignment and domain information |
---|
Probab=99.00 E-value=1.4e-08 Score=77.05 Aligned_cols=213 Identities=15% Similarity=0.236 Sum_probs=140.2 Q ss_pred CEEEEEECCC---CCCCCCCCCCEEEECCCCCCHHHHH---HHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHH Q ss_conf 5499994065---1183765773024578866288999---999999999987618950589996288888789999999 Q gi|254780628|r 18 SLGVYVHWPF---CVKKCPYCDFNSHVRRYKVGQENFI---QSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIAL 91 (395) Q Consensus 18 ~l~lYihiPF---C~~~C~yC~f~~~~~~~~~~~~~y~---~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ 91 (395) T Consensus 42 tyv~n~~iN~TNvC~~~C~FCaF~r~~~~~----~ay~ls~eei~~~~~e~~----~~G~tEv~i~GG~~P~l~~eyy~~ 113 (350) T PRK05927 42 TYVLDANPNYTNICKIDCTFCAFYRKPRSS----DAYLLSFDEFRSLMQRYV----SSGVKTVLLQGGVHPQLGIDYLEE 113 (350) T ss_pred EEEEECCCCCCHHHHCCCCCCCCCCCCCCC----CCCCCCHHHHHHHHHHHH----HCCCCEEEEECCCCCCCCHHHHHH T ss_conf 996204877412565769347742589998----753279999999999998----669838998268899998699999 Q ss_pred HHHHHHHCCC-CCCC----CCCCCCCCCCCC-HHHHHHHHHHCCCCCEE-EECCCCCCHHHHHHHC-CCCCHHHHHHHHH Q ss_conf 9976640476-4443----321133210410-02347766303454114-3234332013455422-4431347899998 Q gi|254780628|r 92 ILDGIAKNWT-VSSN----VEITIEANPSSV-EVNNFQGYRKAGVNRIS-LGVQSLEEQSLRFLGR-NHNASEAIAAIHL 163 (395) Q Consensus 92 ll~~i~~~~~-~~~~----~e~t~E~~P~~~-~~~~l~~l~~~Gv~RiS-~GvQs~~~~~l~~~~R-~~~~~~~~~~~~~ 163 (395) T Consensus 114 l~r~ik~~~P~i~ihafs~~Ei~~~a~~~g~s~~e~L~~Lk~AGL~slPGgGAEIl~d~VR~~I~p~K~s~~~Wl~i~~~ 193 (350) T PRK05927 114 LVRITVQEFPSLHPHFFSAVEIAHAAQVSGISTEQALQRLWDAGQRTIPGGGAEILSERVRKIISPKKMGPDGWINFHKL 193 (350) T ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHH T ss_conf 99999974888665669999999999885999999999999737676899875016877775148888899999999999 Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC--CE-EEEEEEEEC-CCEEHHHHHCCCCCCCHHHHHHHHHHHH Q ss_conf 6302444333210002585432211127887531800--12-346468825-9600014544980211035678899986 Q gi|254780628|r 164 ARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYAVD--HL-SLYQLTIEK-GTLFYKMHKDGDLVLPSENVAVDLYNLT 239 (395) Q Consensus 164 ~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~--~i-s~Y~l~i~~-~t~l~~~~~~~~~~~p~~~~~~~~~~~a 239 (395) T Consensus 194 AH~lGi~ttaTmlyGh-iEt~e~ri~HL~~lR~lQdeTgGF~~FIpl~F~p~nt~l~~~~~~~----~~~~~~Lr~~Ava 268 (350) T PRK05927 194 AHRLGFRSTATMMFGH-VENPEDILLHLQTLRDAQDENPGFYSFIPWSYKPGNTALGRRVPQQ----ASPELYYRILALA 268 (350) T ss_pred HHHCCCCCCCEEECCC-CCCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCHHHHCCCCC----CCHHHHHHHHHHH T ss_conf 9985997520246368-7999999999999999876509879999467654887465427889----9845759999999 Q ss_pred HHHH Q ss_conf 5578 Q gi|254780628|r 240 QSIT 243 (395) Q Consensus 240 ~e~L 243 (395) T Consensus 269 Rl~L 272 (350) T PRK05927 269 RIFL 272 (350) T ss_pred HHHC T ss_conf 9970 |
|
>PRK06245 cofG FO synthase subunit 1; Reviewed | Back alignment and domain information |
---|
Probab=98.97 E-value=7e-09 Score=78.99 Aligned_cols=213 Identities=14% Similarity=0.205 Sum_probs=126.2 Q ss_pred CEEEEEECCC---CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHH Q ss_conf 5499994065---1183765773024578866288999999999999987618950589996288888789999999997 Q gi|254780628|r 18 SLGVYVHWPF---CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILD 94 (395) Q Consensus 18 ~l~lYihiPF---C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~ 94 (395) T Consensus 9 Ty~~n~~In~TNiC~~~C~fCaF~~~~~~a~~-ls--~eev~~~~~ea~-~~G~--tEvl~~gG~~P~~-~~~~~~~l~~ 81 (336) T PRK06245 9 TYSRNVFIPLTYECRNRCGYCTFRPDPGEASL-LS--PEEVREILERGQ-DAGC--TEALFTFGEVPDE-SEEIREQLAE 81 (336) T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CC--HHHHHHHHHHHH-HCCC--EEEEEECCCCCCC-CHHHHHHHHH T ss_conf 98186261677540268825867468875687-79--999999999999-7698--3999805788663-6899999997 Q ss_pred HHHHCC-C-CCCCCCCCCC------CCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCC---CCCHHHHHHHHH Q ss_conf 664047-6-4443321133------2104100234776630345411432343320134554224---431347899998 Q gi|254780628|r 95 GIAKNW-T-VSSNVEITIE------ANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRN---HNASEAIAAIHL 163 (395) Q Consensus 95 ~i~~~~-~-~~~~~e~t~E------~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~---~~~~~~~~~~~~ 163 (395) T Consensus 82 ~~~~~~~~~~~~~~~~~le~gllph~n~G~ls~~el~~Lk~v~as-mG~mlE~~se~l~~~~h~~~P~K~~~~rL~~ie~ 160 (336) T PRK06245 82 PGYSSWLEYLYDLCELALETGLLPHTNAGILSRAEMEALKPVNAS-MGLMLEQTSPRLLETVHRHSPGKDPELRLETIEW 160 (336) T ss_pred HCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCC-CCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHH T ss_conf 075507788999858887636552236676789999987535976-6757123568988763044898788999999999 Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC--CEEE---EEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHH Q ss_conf 6302444333210002585432211127887531800--1234---6468825960001454498021103567889998 Q gi|254780628|r 164 ARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYAVD--HLSL---YQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNL 238 (395) Q Consensus 164 ~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~--~is~---Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~ 238 (395) T Consensus 161 Ah~lgIptTatmL~G-~gET~eeRi~hL~~IR~lq~~tGgfqefI~~~F~p~~~t~m~~~------~~~~~~e~l~~iAv 233 (336) T PRK06245 161 AGELKIPFTTGLLIG-IGETWEDRIESLEAIAELHERYGHIQEVIIQNFRPKPGIPMENH------PEPSPEEMPRVVAL 233 (336) T ss_pred HHHCCCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCC------CCCCHHHHHHHHHH T ss_conf 998399722024520-66999999999999999886349757995068778987533469------99799999999999 Q ss_pred HHHHHHH Q ss_conf 6557887 Q gi|254780628|r 239 TQSITSA 245 (395) Q Consensus 239 a~e~L~~ 245 (395) T Consensus 234 ARiiL~~ 240 (336) T PRK06245 234 ARLILPP 240 (336) T ss_pred HHHHCCC T ss_conf 9996699 |
|
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional | Back alignment and domain information |
---|
Probab=98.94 E-value=4.1e-08 Score=73.86 Aligned_cols=176 Identities=15% Similarity=0.291 Sum_probs=117.6 Q ss_pred CCEEEEEECCC-CCCCCCCCCCEEEEC--CCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHH Q ss_conf 85499994065-118376577302457--886628899999999999998761895058999628888878999999999 Q gi|254780628|r 17 NSLGVYVHWPF-CVKKCPYCDFNSHVR--RYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALIL 93 (395) Q Consensus 17 ~~l~lYihiPF-C~~~C~yC~f~~~~~--~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll 93 (395) T Consensus 15 aP~~v~~elT~~CNL~C~hCy~~~~~~~~~~ELs~~e-~~~~id~l~~---~-G---v~~v~~tGGEPllr-~-D~~ei~ 84 (375) T PRK05301 15 PPLWLLAELTYRCPLQCPYCSNPLDLARHGAELSTAE-WIRVLREARA---L-G---VLQLHFSGGEPLLR-K-DLEELV 84 (375) T ss_pred CCEEEEEHHHCHHCCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHHH---C-C---CCEEEECCCCCCCC-C-CHHHHH T ss_conf 9728435731400787846698500487657899999-9999999998---6-9---98899618652456-6-899999 Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHH-HCCCCCHHHHHHHHHHHCCCCCCC Q ss_conf 7664047644433211332104100234776630345411432343320134554-224431347899998630244433 Q gi|254780628|r 94 DGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFL-GRNHNASEAIAAIHLARNIFPRMS 172 (395) Q Consensus 94 ~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~-~R~~~~~~~~~~~~~~~~~~~~v~ 172 (395) T Consensus 85 ~~a~~~-G~----~~~l~TNG~lit~~~a~~L~~~gl~~v~vSlDg~~~e~hD~~rG~~G~f~~~~~~i~~l~~~Gi~v~ 159 (375) T PRK05301 85 AHARRL-GL----YTNLITSGVGLTEARLAALKAAGLDHIQLSFQDSDPELADRIAGTRGAFAQKLEVARLVKAHGYPLT 159 (375) T ss_pred HHHHHC-CC----EEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEE T ss_conf 999976-97----5899606745579999999850998899956779877877763788629999999999997498169 Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEE Q ss_conf 3210002585432211127887531800123464688 Q gi|254780628|r 173 FDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTI 209 (395) Q Consensus 173 iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i 209 (395) T Consensus 160 i~--~ti~r~N~~~l~~i~~la~~lGv~~~~l~~~~~ 194 (375) T PRK05301 160 LN--AVIHRHNIDQIPRIIELAVELGADRLELANTQY 194 (375) T ss_pred EE--EEECCCCHHHHHHHHHHHHHCCCCEEEEEEEEE T ss_conf 99--872305688899999999972998289876567 |
|
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only] | Back alignment and domain information |
---|
Probab=98.90 E-value=1.6e-07 Score=70.06 Aligned_cols=182 Identities=16% Similarity=0.214 Sum_probs=127.6 Q ss_pred CCCCEEEEEECCC-CCCCCCCCCCEEEEC-CCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHH Q ss_conf 9885499994065-118376577302457-88662889999999999999876189505899962888887899999999 Q gi|254780628|r 15 GSNSLGVYVHWPF-CVKKCPYCDFNSHVR-RYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALI 92 (395) Q Consensus 15 ~~~~l~lYihiPF-C~~~C~yC~f~~~~~-~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~l 92 (395) T Consensus 15 ~~~p~~~~~~~t~~Cnl~C~~C~~~~~~~~~~el~~~~~~----~~~~~~~~-~-g~-~~~v~~~gGEPll~--~~~~ei 85 (347) T COG0535 15 KKPPLVVGIELTNRCNLACKHCYAEAGKKLPGELSTEEDL----RVIDELAE-L-GE-IPVVIFTGGEPLLR--PDLLEI 85 (347) T ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHH----HHHHHHHH-C-CC-EEEEEECCCCCEEC--CCHHHH T ss_conf 4677379985588768749987724267767735687878----99999987-1-88-44998079873334--579999 Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHH-HHHHHCCCCCHHHHHHHHHHHCCCCCC Q ss_conf 9766404764443321133210410023477663034541143234332013-455422443134789999863024443 Q gi|254780628|r 93 LDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQS-LRFLGRNHNASEAIAAIHLARNIFPRM 171 (395) Q Consensus 93 l~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~-l~~~~R~~~~~~~~~~~~~~~~~~~~v 171 (395) T Consensus 86 ~~~~~~~~~~----~~~~~TnG~~~~~~~~~~l~~~g~~~v~iSld~~~~e~hd~~rg~~g~~~~~~~~i~~~~~~g~~- 160 (347) T COG0535 86 VEYARKKGGI----RVSLSTNGTLLTEEVLEKLKEAGLDYVSISLDGLDPETHDPIRGVKGVFKRAVEAIKNLKEAGIL- 160 (347) T ss_pred HHHHHHCCCE----EEEEECCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCE- T ss_conf 9998513872----89882687545388999887668876999974588532140027762699999999999873970- Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEEC Q ss_conf 3321000258543221112788753180012346468825 Q gi|254780628|r 172 SFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEK 211 (395) Q Consensus 172 ~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~ 211 (395) T Consensus 161 -~~~~~~v~~~n~~~l~~~~~~~~~~g~~~~~~~~~~~~g 199 (347) T COG0535 161 -VVINTTVTKINYDELPEIADLAAELGVDELNVFPLIPVG 199 (347) T ss_pred -EEEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEEEECC T ss_conf -489999956634658999999986597605767644314 |
|
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed | Back alignment and domain information |
---|
Probab=98.82 E-value=4e-08 Score=73.94 Aligned_cols=173 Identities=16% Similarity=0.241 Sum_probs=116.2 Q ss_pred CCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCC Q ss_conf 65118376577302457886628899999999999998761895058999628888878999999999766404764443 Q gi|254780628|r 26 PFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSN 105 (395) Q Consensus 26 PFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~ 105 (395) T Consensus 25 drCN~rC~YCmpe~~~~~~~~~~~~~Ls--~eEi~~i~~~~~~lGi~kiRlTGGEPLl--R~di~~li~~l~~~~---gi 97 (334) T PRK00164 25 DRCNFRCTYCMPEGYFGLTFLPKEELLS--LEEIERLVRAFAALGVRKIRLTGGEPLL--RKDLEDIIARLAALP---GI 97 (334) T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHCCC--HHHHHHHHHHHHHCCCCEEEECCCCCCC--CCCHHHHHHHHHHCC---CC T ss_conf 4404738778997777878887342299--9999999999997096279860788432--357899999986327---97 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCC---CCCCCCCCCCCC Q ss_conf 32113321041002347766303454114323433201345542244313478999986302444---333210002585 Q gi|254780628|r 106 VEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPR---MSFDLIYALPKQ 182 (395) Q Consensus 106 ~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~---v~iDli~GlPgq 182 (395) T Consensus 98 ~~v~lTTNG-~lL~~~a~~Lk~aGL~riNISLDsLd~~~f~~IT~~~~l~~Vl~gI~~A~~~G~~~vKiN~V~---~~g~ 173 (334) T PRK00164 98 RDLALTTNG-YLLARRAAALKDAGLTRVNVSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLEPVKVNAVL---MKGV 173 (334) T ss_pred CCEEEECCH-HHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEE---ECCC T ss_conf 517884448-899999999998599869971131899999998489975999999999995898761689996---3798 Q ss_pred CCCCCCCCHHHHHHCCCCCEEEEEEEEE Q ss_conf 4322111278875318001234646882 Q gi|254780628|r 183 TMTQWEMELQRALSYAVDHLSLYQLTIE 210 (395) Q Consensus 183 t~e~~~~~l~~~~~l~p~~is~Y~l~i~ 210 (395) T Consensus 174 N~dEi~~li~~~~~~~i~-vRFIE~Mp~ 200 (334) T PRK00164 174 NDDEIPDLLRWAKDRGIQ-LRFIELMPT 200 (334) T ss_pred CHHHHHHHHHHHHHCCCE-EEEEEEECC T ss_conf 989999999999646965-999998216 |
|
>PRK05926 hypothetical protein; Provisional | Back alignment and domain information |
---|
Probab=98.81 E-value=3.9e-08 Score=74.02 Aligned_cols=191 Identities=12% Similarity=0.169 Sum_probs=130.3 Q ss_pred EEEECC---CCCCCCCCCCCEEEECCCCCCHHHHH---HHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHH Q ss_conf 999406---51183765773024578866288999---999999999987618950589996288888789999999997 Q gi|254780628|r 21 VYVHWP---FCVKKCPYCDFNSHVRRYKVGQENFI---QSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILD 94 (395) Q Consensus 21 lYihiP---FC~~~C~yC~f~~~~~~~~~~~~~y~---~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~ 94 (395) T Consensus 69 ~nr~INyTNvC~~~C~FCaF~r~~~~----~~aY~ls~eei~~~v~e---~--~~g~tEv~i~GG~hP~l~~~yY~~l~~ 139 (371) T PRK05926 69 STLYLYPTNFCDFNCTFCSFYAKPGD----PKGWFYTPDQLIQSIQE---I--KSPITETHIVAGCFPSCNLAYYEELFS 139 (371) T ss_pred EECCCCCCHHHHCCCCCCCCCCCCCC----CCCCCCCHHHHHHHHHH---H--HCCCCEEEEECCCCCCCCHHHHHHHHH T ss_conf 24586521134267924776368999----76523899999999999---8--759968997178898998699999999 Q ss_pred HHHHCCCCCC-----CCCCCCCCCCCCC-HHHHHHHHHHCCCCCEE-EECCCCCCHHHHHHHC-CCCCHHHHHHHHHHHC Q ss_conf 6640476444-----3321133210410-02347766303454114-3234332013455422-4431347899998630 Q gi|254780628|r 95 GIAKNWTVSS-----NVEITIEANPSSV-EVNNFQGYRKAGVNRIS-LGVQSLEEQSLRFLGR-NHNASEAIAAIHLARN 166 (395) Q Consensus 95 ~i~~~~~~~~-----~~e~t~E~~P~~~-~~~~l~~l~~~Gv~RiS-~GvQs~~~~~l~~~~R-~~~~~~~~~~~~~~~~ 166 (395) T Consensus 140 ~ik~~~P~v~ihaft~~EI~~~a~~~~~s~~EvL~~Lk~AGL~SlPGgGAEIl~d~VR~~I~p~K~~~~~Wlei~~~AH~ 219 (371) T PRK05926 140 KIKENFPDIHIKALTAIEYAYLSKLDNLPVREVLQTLKIAGLDSIPGGGAEILVDEIRETLAPGRLSSQDFLEIHKTAHS 219 (371) T ss_pred HHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHH T ss_conf 99975898741448899999999980999999999999838777888732434778999758898989999999999998 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC---CEEEEEEEE-ECCCEEHHHHHC Q ss_conf 2444333210002585432211127887531800---123464688-259600014544 Q gi|254780628|r 167 IFPRMSFDLIYALPKQTMTQWEMELQRALSYAVD---HLSLYQLTI-EKGTLFYKMHKD 221 (395) Q Consensus 167 ~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~---~is~Y~l~i-~~~t~l~~~~~~ 221 (395) T Consensus 220 lGi~t~ATMmyGH-iEt~~~rv~HL~~lR~lQdeTgGF~~FIpl~F~p~nt~l~~~~~~ 277 (371) T PRK05926 220 LGIPSNATMLCYH-RETPEDIVTHMSKLRDLQDETLGFKNFILLKFASENNALGKRLRK 277 (371) T ss_pred CCCCCCEEEECCC-CCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHCCC T ss_conf 6997520465246-699999999999999988752994299724424778822020268 |
|
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional | Back alignment and domain information |
---|
Probab=98.78 E-value=3e-08 Score=74.74 Aligned_cols=172 Identities=18% Similarity=0.236 Sum_probs=115.6 Q ss_pred CCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCC Q ss_conf 65118376577302457886628899999999999998761895058999628888878999999999766404764443 Q gi|254780628|r 26 PFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSN 105 (395) Q Consensus 26 PFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~ 105 (395) T Consensus 22 drCN~rC~YCmp-e--g~~~~~~~~~Ls--~eEi~~l~~~~~~~Gi~kvRlTGGEPLlR--~dl~~li~~l~~~~g---i 91 (329) T PRK13361 22 DRCDFRCVYCMS-E--DPCFLPRDQVLT--LEELAWLAQAFTELGVRKIRLTGGEPLVR--TGCDQLVARLGKLPG---L 91 (329) T ss_pred CCCCCCCCCCCC-C--CCCCCCCCCCCC--HHHHHHHHHHHHHCCCEEEEEECCCCCCC--CCHHHHHHHHHHCCC---C T ss_conf 440583878799-8--998787024689--99999999999972952899627882235--688999999861799---7 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCC Q ss_conf 3211332104100234776630345411432343320134554224431347899998630244-433321000258543 Q gi|254780628|r 106 VEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFP-RMSFDLIYALPKQTM 184 (395) Q Consensus 106 ~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~-~v~iDli~GlPgqt~ 184 (395) T Consensus 92 ~~islTTNG-~lL~~~a~~Lk~aGL~rvNISLDsLd~~~f~~ITr~~~l~~Vl~gI~aA~~~G~~~VKiN~-V~lrg~Nd 169 (329) T PRK13361 92 EELSMTTNG-SRLARFAAELADAGLKRLNISLDTLNPDLFAALTRNGRLERVIAGIDAAKAAGFERIKLNA-VILRGQND 169 (329) T ss_pred CEEEEECCH-HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEEE-EEECCCCH T ss_conf 718996647-7689999999977998699735779999999772899769999999999977997388999-98368788 Q ss_pred CCCCCCHHHHHHCCCCCEEEEEEEEE Q ss_conf 22111278875318001234646882 Q gi|254780628|r 185 TQWEMELQRALSYAVDHLSLYQLTIE 210 (395) Q Consensus 185 e~~~~~l~~~~~l~p~~is~Y~l~i~ 210 (395) T Consensus 170 dEi~~l~~~~~~~~~~-vRFIE~MP~ 194 (329) T PRK13361 170 DEVLDLVEFCRERGLD-IAFIEEMPL 194 (329) T ss_pred HHHHHHHHHHHHCCCC-EEEEEEEEC T ss_conf 8999999999748983-698874326 |
|
>PRK09234 fbiC FO synthase; Reviewed | Back alignment and domain information |
---|
Probab=98.77 E-value=1.2e-07 Score=70.82 Aligned_cols=182 Identities=11% Similarity=0.206 Sum_probs=98.5 Q ss_pred EEEEEECCC---CCCCCCCCCCEEEECCCCCC---HHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCC-------- Q ss_conf 499994065---11837657730245788662---8899999999999998761895058999628888878-------- Q gi|254780628|r 19 LGVYVHWPF---CVKKCPYCDFNSHVRRYKVG---QENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLI-------- 84 (395) Q Consensus 19 l~lYihiPF---C~~~C~yC~f~~~~~~~~~~---~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l-------- 84 (395) T Consensus 73 yS~kVFiPLT~lCrd~C~YCtF~~~p~~~~~~~l~~d-eV~~ia~~----g~~~GC--~EALftlGd~PE~r~~~a~~~L 145 (846) T PRK09234 73 YSRKVFIPLTRLCRDRCHYCTFATVPGKLRAAYLSPD-EVLDIARA----GAAAGC--KEALFTLGDRPEDRWPEAREWL 145 (846) T ss_pred ECCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHH-HHHHHHHH----HHHCCC--CEEHHCCCCCHHHHHHHHHHHH T ss_conf 5786431430687636887764368865567778999-99999999----998699--5613146888677489999999 Q ss_pred -------CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEE--CCCCCCHHHHHHHCCC--- Q ss_conf -------9999999997664047644433211332104100234776630345411432--3433201345542244--- Q gi|254780628|r 85 -------EPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLG--VQSLEEQSLRFLGRNH--- 152 (395) Q Consensus 85 -------~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~G--vQs~~~~~l~~~~R~~--- 152 (395) T Consensus 146 ~~~G~~st~~Yl~~~~~~vl~etgLLPH------~N~G~ls~~el~~Lk~v--~-~SmGlMLEs~s~rL~~~~g~~H~~s 216 (846) T PRK09234 146 DERGYDSTLDYVRAMAIRVLEETGLLPH------LNPGVMSWSELARLKPV--A-PSMGMMLETTSRRLFETKGGAHYGS 216 (846) T ss_pred HHCCCCCHHHHHHHHHHHHHHHCCCCCC------CCCCCCCHHHHHHHHCC--C-CCCEEEECCCCHHHCCCCCCCCCCC T ss_conf 9719845999999999999986598887------89888999999985236--8-7520451103464424789888899 Q ss_pred CCHHHHHHHHHHHCCC---CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC-----CCEEEEEEEEECCCEEHH Q ss_conf 3134789999863024---4433321000258543221112788753180-----012346468825960001 Q gi|254780628|r 153 NASEAIAAIHLARNIF---PRMSFDLIYALPKQTMTQWEMELQRALSYAV-----DHLSLYQLTIEKGTLFYK 217 (395) Q Consensus 153 ~~~~~~~~~~~~~~~~---~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p-----~~is~Y~l~i~~~t~l~~ 217 (395) T Consensus 217 P~K~P~~Rl~tl~~AG~l~iPfTTGiLiGI-GEt~~er~~sL~ai~~~h~~yghIQEVIiQNF~~K~~t~m~~ 288 (846) T PRK09234 217 PDKDPAVRLRVLEDAGRLSVPFTTGILIGI-GETLAERAESLFAIRKSHREYGHIQEVIVQNFRAKPDTAMAG 288 (846) T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEEECC-CCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCC T ss_conf 998989999999985404797321113257-799999999999999999973996579836888998986867 |
|
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism] | Back alignment and domain information |
---|
Probab=98.74 E-value=9.9e-08 Score=71.36 Aligned_cols=169 Identities=17% Similarity=0.265 Sum_probs=117.4 Q ss_pred CCCCCCCCCCCCCEE-EECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCC Q ss_conf 065118376577302-4578866288999999999999987618950589996288888789999999997664047644 Q gi|254780628|r 25 WPFCVKKCPYCDFNS-HVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVS 103 (395) Q Consensus 25 iPFC~~~C~yC~f~~-~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~ 103 (395) T Consensus 18 TdrCNfrC~YCm~eg~~~~~~~---~~~Ls--~eei~~~~~~~~~~Gv~kvRlTGGEPll--R~dl~eIi~~l~~~-~-- 87 (322) T COG2896 18 TDRCNFRCTYCMPEGPLAFLPK---EELLS--LEEIRRLVRAFAELGVEKVRLTGGEPLL--RKDLDEIIARLARL-G-- 87 (322) T ss_pred ECCCCCCCCCCCCCCCCCCCCC---CCCCC--HHHHHHHHHHHHHCCCCEEEEECCCCHH--HCCHHHHHHHHHHC-C-- T ss_conf 2673774644688886566765---45489--9999999999997396458971898313--32799999987434-6-- Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCC---CCCCCCCCCC Q ss_conf 4332113321041002347766303454114323433201345542244313478999986302444---3332100025 Q gi|254780628|r 104 SNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPR---MSFDLIYALP 180 (395) Q Consensus 104 ~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~---v~iDli~GlP 180 (395) T Consensus 88 -~~~islTTN-G~~L~~~a~~Lk~AGl~rVNVSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~---k 162 (322) T COG2896 88 -IRDLSLTTN-GVLLARRAADLKEAGLDRVNVSLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLNTVLM---K 162 (322) T ss_pred -CCEEEEECC-HHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEEE---C T ss_conf -442887445-67679999999975986899503449989999886789299999999999976998557888984---6 Q ss_pred CCCCCCCCCCHHHHHHCCCCCEEEEEEEE Q ss_conf 85432211127887531800123464688 Q gi|254780628|r 181 KQTMTQWEMELQRALSYAVDHLSLYQLTI 209 (395) Q Consensus 181 gqt~e~~~~~l~~~~~l~p~~is~Y~l~i 209 (395) T Consensus 163 gvNd~ei~~l~e~~~~~~~-~lrfIE~m~ 190 (322) T COG2896 163 GVNDDEIEDLLEFAKERGA-QLRFIELMP 190 (322) T ss_pred CCCHHHHHHHHHHHHHCCC-CEEEEEEEE T ss_conf 9887899999999852698-447999866 |
|
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit | Back alignment and domain information |
---|
Probab=98.74 E-value=3.2e-08 Score=74.57 Aligned_cols=208 Identities=14% Similarity=0.196 Sum_probs=112.3 Q ss_pred EEEECCC---CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCC-CCCCCCHHHHHHHHHHH Q ss_conf 9994065---1183765773024578866288999999999999987618950589996288-88878999999999766 Q gi|254780628|r 21 VYVHWPF---CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGG-TPSLIEPQNIALILDGI 96 (395) Q Consensus 21 lYihiPF---C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGG-TPs~l~~~~l~~ll~~i 96 (395) T Consensus 4 ~N~~In~TNiC~~~C~FCaF~r~~~~~~----ay~ls~-eei~~~~~ea~~~G~tEv~i~gG~~P~-~~~~~~~~~l~~~ 77 (322) T TIGR03550 4 RNVFIPLTRLCRNRCGYCTFRRPPGELE----AALLSP-EEVLEILRKGAAAGCTEALFTFGEKPE-ERYPEAREWLAEM 77 (322) T ss_pred CCCCCCCCCCHHCCCCCCCCCCCCCCCC----CCCCCH-HHHHHHHHHHHHCCCEEEEECCCCCHH-HHHHHHHHHHHHH T ss_conf 7215688720317696788516899988----774799-999999999997798799964886800-3499999999984 Q ss_pred HHCCC---CCCCC-----CCCC--CCCCCCCHHHHHHHHHHCCCCCEEEE--CCC----CCCHHHHHHHCCCCCHHHHHH Q ss_conf 40476---44433-----2113--32104100234776630345411432--343----320134554224431347899 Q gi|254780628|r 97 AKNWT---VSSNV-----EITI--EANPSSVEVNNFQGYRKAGVNRISLG--VQS----LEEQSLRFLGRNHNASEAIAA 160 (395) Q Consensus 97 ~~~~~---~~~~~-----e~t~--E~~P~~~~~~~l~~l~~~Gv~RiS~G--vQs----~~~~~l~~~~R~~~~~~~~~~ 160 (395) T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~t~eel~~Lk~~~a---glg~~~e~~ae~l~~~vr~~~~P~K~~~~~l~i 154 (322) T TIGR03550 78 GYDSTLEYLRELCELALEETGLLPHTNPGVMSRDELARLKPVNA---SMGLMLETTSERLCKGEAHYGSPGKDPAVRLET 154 (322) T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCC---CHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH T ss_conf 88617899999999999863356544767688999998763186---266678888875322235677999887999999 Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC--CEEEE---EEEEECCCEEHHHHHCCCCCCCHHHHHHHH Q ss_conf 9986302444333210002585432211127887531800--12346---468825960001454498021103567889 Q gi|254780628|r 161 IHLARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYAVD--HLSLY---QLTIEKGTLFYKMHKDGDLVLPSENVAVDL 235 (395) Q Consensus 161 ~~~~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~--~is~Y---~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~ 235 (395) T Consensus 155 ~~~Ah~lGi~ttaTml~G-hiEt~eeri~HL~~lR~lQdetggf~efIp~~F~p~~~~~~~~~------~~~s~~e~Lr~ 227 (322) T TIGR03550 155 IEDAGRLKIPFTTGILIG-IGETREERAESLLAIRELHERYGHIQEVIVQNFRAKPGTPMENH------PEPSLEEMLRT 227 (322) T ss_pred HHHHHHCCCCEEEEEEEE-CCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCC------CCCCHHHHHHH T ss_conf 999998599615123420-46999999999999998786529657996267668998645569------99899999999 Q ss_pred HHHHHHHHH Q ss_conf 998655788 Q gi|254780628|r 236 YNLTQSITS 244 (395) Q Consensus 236 ~~~a~e~L~ 244 (395) T Consensus 228 iAvaRl~Ld 236 (322) T TIGR03550 228 VAVARLILP 236 (322) T ss_pred HHHHHHHCC T ss_conf 999999759 |
This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria. |
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown] | Back alignment and domain information |
---|
Probab=98.72 E-value=7.8e-07 Score=65.42 Aligned_cols=211 Identities=14% Similarity=0.164 Sum_probs=157.8 Q ss_pred CCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC--CCHHHHHHH Q ss_conf 988549999406511837657730245788662889999999999999876189505899962888887--899999999 Q gi|254780628|r 15 GSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSL--IEPQNIALI 92 (395) Q Consensus 15 ~~~~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~--l~~~~l~~l 92 (395) T Consensus 8 ~~k~~sISVTG~yC~lnC~HCg~~--~L~~Mi~vt~--~~l~k~~~el~----kkGy~g~llSGGm~srg~VPl~kf~d~ 79 (275) T COG1856 8 PPKFISISVTGAYCSLNCPHCGRH--YLEHMIKVTT--KSLLKRCMELE----KKGYEGCLLSGGMDSRGKVPLWKFKDE 79 (275) T ss_pred CCCCCEEEEECCCEEECCHHHHHH--HHHHHCCCCH--HHHHHHHHHHH----HCCCEEEEEECCCCCCCCCCHHHHHHH T ss_conf 887723788636357538177799--9987525325--77888999998----457605897578687997428999999 Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCC Q ss_conf 97664047644433211332104100234776630345411432343320134554224431347899998630244433 Q gi|254780628|r 93 LDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMS 172 (395) Q Consensus 93 l~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~ 172 (395) T Consensus 80 lK~lke~~~l------~inaHvGfvdE~~~eklk~~~vdvvsLDfvgDn~vIk~vy~l~ksv~dyl~~l~~L~e~~irvv 153 (275) T COG1856 80 LKALKERTGL------LINAHVGFVDESDLEKLKEELVDVVSLDFVGDNDVIKRVYKLPKSVEDYLRSLLLLKENGIRVV 153 (275) T ss_pred HHHHHHHHCE------EEEEEEEECCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEC T ss_conf 9998775374------8999851001788999987168689986127748999997688637777889999997094253 Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 3210002585432211127887531800123464688259600014544980211035678899986557887 Q gi|254780628|r 173 FDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSA 245 (395) Q Consensus 173 iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~ 245 (395) T Consensus 154 pHitiGL~~gki~~e~kaIdiL~~~~~DalVl~vliPtpGtkm~~~------~pp~~eE~i~v~~~AR~~f~~ 220 (275) T COG1856 154 PHITIGLDFGKIHGEFKAIDILVNYEPDALVLVVLIPTPGTKMGNS------PPPPVEEAIKVVKYARKKFPN 220 (275) T ss_pred EEEEEEECCCCCCCHHHHHHHHHCCCCCEEEEEEEECCCCHHCCCC------CCCCHHHHHHHHHHHHHHCCC T ss_conf 0599973168523338788998607997399999813885010577------976989999999999985899 |
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>PRK13758 anaerobic sulfatase-maturase; Provisional | Back alignment and domain information |
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Probab=98.71 E-value=9.3e-07 Score=64.92 Aligned_cols=183 Identities=13% Similarity=0.162 Sum_probs=113.0 Q ss_pred CCEEEEE--ECCCCCCCCCCCCCEEEECCCCCC-----HHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHH Q ss_conf 8549999--406511837657730245788662-----889999999999999876189505899962888887899999 Q gi|254780628|r 17 NSLGVYV--HWPFCVKKCPYCDFNSHVRRYKVG-----QENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNI 89 (395) Q Consensus 17 ~~l~lYi--hiPFC~~~C~yC~f~~~~~~~~~~-----~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l 89 (395) T Consensus 2 ~p~~~iv~~~T~~CNL~C~YCy~~~~~~~~~~~~~~~~~~e~~~~~i---~~~~~~-~~~~~-~i~f~GGEPLL~~~~~~ 76 (370) T PRK13758 2 PPLSLLIKPASSGCNLKCTYCFYHSLSDNRNVKSYGIMRDEVLESMV---KRVLNE-AEGHC-SFAFQGGEPTLAGLEFF 76 (370) T ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH---HHHHHC-CCCCE-EEEEECCCCCCCCCHHH T ss_conf 88509966687884889976688376886666664548299999999---999863-68953-89997722206983699 Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEE---ECCCCCCHHHHHHHCCCCCHHHHHHHHHHHC Q ss_conf 9999766404764443321133210410023477663034541143---2343320134554224431347899998630 Q gi|254780628|r 90 ALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISL---GVQSLEEQSLRFLGRNHNASEAIAAIHLARN 166 (395) Q Consensus 90 ~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~---GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~ 166 (395) T Consensus 77 ~~~~~~~~~~~~~~~~i~~~i~TNGtLL~~e~~~~l~~~~~~-I~ISlDG~~~~HD~~R~~~~G~Gsf~~v~~~i~~l~~ 155 (370) T PRK13758 77 EELMELQRKHNYKNLKIYNSLQTNGTLIDESWAKFLSENKFL-VGLSMDGPKEIHNLNRKDCCGLDTFSKVERAAELFKK 155 (370) T ss_pred HHHHHHHHHHCCCCCEEEEEEEECCEECCHHHHHHHHHCCEE-EEEECCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHH T ss_conf 999999998556897699998518876689999999976948-9996468888874006888997059999999999997 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEE Q ss_conf 24443332100025854322111278875318001234646 Q gi|254780628|r 167 IFPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQL 207 (395) Q Consensus 167 ~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l 207 (395) T Consensus 156 ~~~~~~--i~~~i~~~~~~~~~~i~~~~~~~g~~~~~~~~~ 194 (370) T PRK13758 156 YKVEFN--ILCVVTSNTARHVNKIYKYFKEKDFKFLQFINC 194 (370) T ss_pred CCCCEE--EEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEC T ss_conf 399700--899991873118999999999769985888842 |
|
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A; InterPro: IPR013483 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cisdithiolene moiety to molybdopterin (MPT) | Back alignment and domain information |
---|
Probab=98.67 E-value=9.5e-08 Score=71.46 Aligned_cols=170 Identities=16% Similarity=0.242 Sum_probs=119.0 Q ss_pred CCCCCCCCCCEEEEC-CCC--CCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCC Q ss_conf 118376577302457-886--62889999999999999876189505899962888887899999999976640476444 Q gi|254780628|r 28 CVKKCPYCDFNSHVR-RYK--VGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSS 104 (395) Q Consensus 28 C~~~C~yC~f~~~~~-~~~--~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~ 104 (395) T Consensus 20 CNlRC~YCM-P~~~FG~~~~f~~~~~~Lt--~eEi~rl~~~~v~~Gv~KvRlTGGEPLl--R~~l~~lv~~~~~~~g~~- 93 (346) T TIGR02666 20 CNLRCVYCM-PEEGFGEGLDFLPKEELLT--FEEIERLVRAFVGLGVRKVRLTGGEPLL--RKDLVELVARLAALPGIE- 93 (346) T ss_pred CCCCCCCCC-CCCCCCCCCCCCCCCCCCC--HHHHHHHHHHHHHCCCEEEEEECCCCCC--CCCHHHHHHHHHHCCCCC- T ss_conf 787246668-8656788766787556689--8999999999997497168752777441--367589999998427854- Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCC-CCHHHHHHHHHHHCCCCC---CCCCCCCCCC Q ss_conf 332113321041002347766303454114323433201345542244-313478999986302444---3332100025 Q gi|254780628|r 105 NVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNH-NASEAIAAIHLARNIFPR---MSFDLIYALP 180 (395) Q Consensus 105 ~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~-~~~~~~~~~~~~~~~~~~---v~iDli~GlP 180 (395) T Consensus 94 ~~di~lTTN-G~~L~~~a~~L~eAGL~rvNvSLDsLd~~~F~~It~~~~~l~~Vl~Gi~aA~~~Gl~~vKlN---~V~~~ 169 (346) T TIGR02666 94 IEDIALTTN-GLLLERHAKDLKEAGLKRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAALEAGLKPVKLN---TVVLR 169 (346) T ss_pred CCEEEECCC-HHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEE---EEECC T ss_conf 335541005-22358899999971888036540148889999985789988899999999996599831476---67627 Q ss_pred CCCCCCCCCCHHHHHHCCCCCEEEEEEE Q ss_conf 8543221112788753180012346468 Q gi|254780628|r 181 KQTMTQWEMELQRALSYAVDHLSLYQLT 208 (395) Q Consensus 181 gqt~e~~~~~l~~~~~l~p~~is~Y~l~ 208 (395) T Consensus 170 G~Nd~Ei~~l~~~~~~~~~~-lRFIE~M 196 (346) T TIGR02666 170 GVNDDEIVDLAEFAKERGVT-LRFIELM 196 (346) T ss_pred CCCHHHHHHHHHHHHHCCCE-EEEEEEC T ss_conf 88977899999999757960-7887515 |
MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism , . In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which coverts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner . MoCF is the active co-factor in eukaryotic and some prokaryotic molybdoenzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdoenzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF . Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 ( |
>PRK13745 anaerobic sulfatase-maturase; Provisional | Back alignment and domain information |
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Probab=98.57 E-value=1.5e-06 Score=63.56 Aligned_cols=190 Identities=9% Similarity=0.017 Sum_probs=121.5 Q ss_pred CCCCCCEEEEEE--CCCCCCCCCCCCCEEEE----CCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCH Q ss_conf 889885499994--06511837657730245----788662889999999999999876189505899962888887899 Q gi|254780628|r 13 GQGSNSLGVYVH--WPFCVKKCPYCDFNSHV----RRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEP 86 (395) Q Consensus 13 ~~~~~~l~lYih--iPFC~~~C~yC~f~~~~----~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~ 86 (395) T Consensus 7 ~~~~~p~hvm~KP~s~~CNL~C~YCyy~~~~~~~~~~~~~~Ms--~e~l~~~I~~~~~~~~~~~v-~f~~~GGEPlL~gl 83 (412) T PRK13745 7 APFAKPLYVMLKPVGAVCNLACDYCYYLEKSKLYQENPKHVMS--DELLEKFIKEYINSQTMPQV-LFTWHGGETLMRPL 83 (412) T ss_pred CCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--HHHHHHHHHHHHHCCCCCEE-EEEEECCCCCCCCH T ss_conf 8666762798213558758899867881614356567757898--99999999999964899858-99986854456547 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC-CEEE-ECCCCCCHHHHHHHCCCCCHHHHHHHHHH Q ss_conf 999999976640476444332113321041002347766303454-1143-23433201345542244313478999986 Q gi|254780628|r 87 QNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVN-RISL-GVQSLEEQSLRFLGRNHNASEAIAAIHLA 164 (395) Q Consensus 87 ~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~-RiS~-GvQs~~~~~l~~~~R~~~~~~~~~~~~~~ 164 (395) T Consensus 84 ~f~~~~v~l~~~~~~-g~~i~~siQTNGtLL~dew~~ff~~~~f~VgiSiDGp~~~HD~~R~~~~G~gs~~~v~~~i~lL 162 (412) T PRK13745 84 SFYKKAMELQKKYAR-GRTIDNCIQTNGTLLTDEWCEFFRENNWLVGVSIDGPQEFHDEYRKNKMGKPSFVKVMKGINLL 162 (412) T ss_pred HHHHHHHHHHHHHCC-CCEEEEEEEECCEECCHHHHHHHHHCCCEEEEECCCCHHHHHHCCCCCCCCCHHHHHHHHHHHH T ss_conf 899999999998538-9846899987787549999999998596799962588788740279889987799999999999 Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEE Q ss_conf 30244433321000258543221112788753180012346468 Q gi|254780628|r 165 RNIFPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLT 208 (395) Q Consensus 165 ~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~ 208 (395) T Consensus 163 ~~~~v~fn~L~--vv~~~n~~~p~~iY~f~k~lg~~~lQFiP~v 204 (412) T PRK13745 163 KKHGVEWNAMA--VVNDFNADYPLDFYNFFKELDCHYIQFAPIV 204 (412) T ss_pred HHCCCCEEEEE--EEECHHHHCHHHHHHHHHHCCCCEEEEECCC T ss_conf 98499646999--9811154588999999997599668763123 |
|
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed | Back alignment and domain information |
---|
Probab=98.17 E-value=4.9e-05 Score=53.52 Aligned_cols=183 Identities=15% Similarity=0.299 Sum_probs=120.8 Q ss_pred CCCCCCCCCCCCEEE---ECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCC Q ss_conf 651183765773024---57886628899999999999998761895058999628888878999999999766404764 Q gi|254780628|r 26 PFCVKKCPYCDFNSH---VRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTV 102 (395) Q Consensus 26 PFC~~~C~yC~f~~~---~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~ 102 (395) T Consensus 92 N~C~N~C~YCGF~~~Nk~i~Rk~Lt----~eEi~~E~~al~~~-G~kri--lLvtGE~p~~~~~~Yi~~~i~~iy~~~~~ 164 (471) T PRK09613 92 NYCVNNCVYCGFRRSNKELKRKKLT----QEEIREEVKALESM-GHKRL--ALVAGEHPVNCDIDYILESIKTIYSTKNG 164 (471) T ss_pred CCCCCCCEECCCCCCCCCCCCCCCC----HHHHHHHHHHHHHC-CCCEE--EEEECCCCCCCCHHHHHHHHHHHHHHCCC T ss_conf 3336787537874778777633789----99999999999976-97318--98714688879889999999999875246 Q ss_pred -CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHC---CCCCHHHHHHHHHHHCC-CCCCCCCCCC Q ss_conf -443321133210410023477663034541143234332013455422---44313478999986302-4443332100 Q gi|254780628|r 103 -SSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGR---NHNASEAIAAIHLARNI-FPRMSFDLIY 177 (395) Q Consensus 103 -~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R---~~~~~~~~~~~~~~~~~-~~~v~iDli~ 177 (395) T Consensus 165 ~g~IrrvnVei~P--l~~eeY~~L~~aGigt~~vfQETYh~~tY~~~Hp~GpK~dy~~RL~a~dRA~~AGi~dVGiGaLl 242 (471) T PRK09613 165 NGEIRRVNVNIAP--TTVENYKKLKEAGIGTYQLFQETYHKPTYEKMHPAGPKSNYDWRLTAMDRAMEAGIDDVGIGVLF 242 (471) T ss_pred CCCEEEEEEEECC--CCHHHHHHHHHCCCCEEEEEEEECCHHHHHHHCCCCCCCCCHHHCCCHHHHHHCCCCEECCHHEE T ss_conf 7853368899447--98699999998699969998630788789985878986563334157888987599713600202 Q ss_pred CCCCCCCCCCC-----CCHHHHHHCCCCCEEEEEEEEECCCEEHH Q ss_conf 02585432211-----12788753180012346468825960001 Q gi|254780628|r 178 ALPKQTMTQWE-----MELQRALSYAVDHLSLYQLTIEKGTLFYK 217 (395) Q Consensus 178 GlPgqt~e~~~-----~~l~~~~~l~p~~is~Y~l~i~~~t~l~~ 217 (395) T Consensus 243 GL~dwr~e~~~l~~Ha~~Le~~yg~g~hTIS~PRlrPa~g~~~~~ 287 (471) T PRK09613 243 GLYDYRFEVLGLLMHAEHLEERFGVGPHTISVPRLEPALGSDLSE 287 (471) T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCC T ss_conf 653689999999999999999759998566367543689997667 |
|
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A; InterPro: IPR013485 This entry consists of archaeal proteins which are predicted to be functionally equivalent to MoaA (molybdenum cofactor biosynthesis protein A) from bacteria (see IPR013483 from INTERPRO) | Back alignment and domain information |
---|
Probab=98.11 E-value=1.4e-05 Score=57.14 Aligned_cols=171 Identities=15% Similarity=0.225 Sum_probs=115.3 Q ss_pred CCCCCCCCCCCCEEEECC--CCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCC Q ss_conf 651183765773024578--866288999999999999987618950589996288888789999999997664047644 Q gi|254780628|r 26 PFCVKKCPYCDFNSHVRR--YKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVS 103 (395) Q Consensus 26 PFC~~~C~yC~f~~~~~~--~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~ 103 (395) T Consensus 18 ~~CN~~CfyCH~EG~~~~~~r~gp~~~~Ls~--eei~~~~~~a~~fGV~kvKlTGGEPlL--R~D~~~Ii~~~~~~---- 89 (324) T TIGR02668 18 DECNLSCFYCHREGEDESRGRQGPGGNELSP--EEIERIVRVASEFGVRKVKLTGGEPLL--RKDLIEIIRRIKDY---- 89 (324) T ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCCCH--HHHHHHHHHHHHCCCCEEEECCCCCCH--HHHHHHHHHHHCCC---- T ss_conf 4238642210367888888888886445589--999999999987088327751787434--56699999861467---- Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHH--CCCCCHHHHHHHHHHHCCCCC---CCCCCCCC Q ss_conf 4332113321041002347766303454114323433201345542--244313478999986302444---33321000 Q gi|254780628|r 104 SNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLG--RNHNASEAIAAIHLARNIFPR---MSFDLIYA 178 (395) Q Consensus 104 ~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~--R~~~~~~~~~~~~~~~~~~~~---v~iDli~G 178 (395) T Consensus 90 ~~~~vSmTTN-G~LL~~~A~~Lk~AGLdRVNVSLdtld~e~Y~kITG~~~~~~~~Vi~GI~~A~~~GL~PVKlN---~Vv 165 (324) T TIGR02668 90 GIKDVSMTTN-GILLEKLAKKLKEAGLDRVNVSLDTLDPEKYKKITGQSRDALDRVIEGIESAVDAGLTPVKLN---MVV 165 (324) T ss_pred CCEEEECCCC-HHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCEEEE---EEE T ss_conf 5034420303-144898999999828561312026788678886448998607899999999997289813788---887 Q ss_pred CCCCCCCC-CCCCHHHHHH-CCCCCEEEEEEE Q ss_conf 25854322-1112788753-180012346468 Q gi|254780628|r 179 LPKQTMTQ-WEMELQRALS-YAVDHLSLYQLT 208 (395) Q Consensus 179 lPgqt~e~-~~~~l~~~~~-l~p~~is~Y~l~ 208 (395) T Consensus 166 l~G~N~~~~~~~m~~f~~~~~~g~~LQlIEl~ 197 (324) T TIGR02668 166 LKGINDNEEIPDMVEFAADYEGGAILQLIELM 197 (324) T ss_pred ECCCCCCCCHHHHHHHHHHHHCCCEEEEEECC T ss_conf 54778850079999999875159368986112 |
; GO: 0046872 metal ion binding, 0006777 Mo-molybdopterin cofactor biosynthetic process. |
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair] | Back alignment and domain information |
---|
Probab=98.09 E-value=6.8e-05 Score=52.58 Aligned_cols=194 Identities=13% Similarity=0.141 Sum_probs=124.4 Q ss_pred HCCCCCCCEEEEEECCC--CCCCCCCCCCEEEECCC-C-----CCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCC Q ss_conf 42889885499994065--11837657730245788-6-----6288999999999999987618950589996288888 Q gi|254780628|r 11 MTGQGSNSLGVYVHWPF--CVKKCPYCDFNSHVRRY-K-----VGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPS 82 (395) Q Consensus 11 ~~~~~~~~l~lYihiPF--C~~~C~yC~f~~~~~~~-~-----~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs 82 (395) T Consensus 21 ~~~~~~~~~~y~in-py~GC~h~C~YCYa~~~~~~~~~~~~~v~vk~n~~e~l~~el~~-----~~~k~~~i~is~~TDp 94 (297) T COG1533 21 LNKSLLCPFDYTLN-PYRGCSHGCIYCYARPMHGYLPKSPTKVNVKENLLELLERELRK-----PGPKRTVIAISSVTDP 94 (297) T ss_pred CCCCCCCCCCEECC-CCCCCCCCCCEEECCCCCCCCCCCCCEEEEHHHHHHHHHHHHHH-----CCCCCEEEEEECCCCC T ss_conf 36677898752337-74787788841336201466567860554015699999988752-----4678559998546888 Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCCCC--CCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHH-CCCCCHHHHH Q ss_conf 789999999997664047644433211332--1041002347766303454114323433201345542-2443134789 Q gi|254780628|r 83 LIEPQNIALILDGIAKNWTVSSNVEITIEA--NPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLG-RNHNASEAIA 159 (395) Q Consensus 83 ~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~--~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~-R~~~~~~~~~ 159 (395) T Consensus 95 yqp~E~~~~ltR~ilei~~~~-~~~v~I~TKS~lv~RDld~l~~~~~~~~v~V~~Sitt~d~~l~k~~EP~apsp~~Ri~ 173 (297) T COG1533 95 YQPIEKEYRLTRKILEILLKY-GFPVSIVTKSALVLRDLDLLLELAERGKVRVAVSITTLDEELAKILEPRAPSPEERLE 173 (297) T ss_pred CCCHHHHHHHHHHHHHHHHHC-CCCEEEEECCCCHHCCHHHHHHHCCCCCEEEEEEEECCCHHHHHHCCCCCCCHHHHHH T ss_conf 856477878999999998853-9967999777410102789984011265189999516848889865899969899999 Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEEC Q ss_conf 9998630244433321000258543221112788753180012346468825 Q gi|254780628|r 160 AIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEK 211 (395) Q Consensus 160 ~~~~~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~ 211 (395) T Consensus 174 al~~l~eaGi~~~v~v~PIiP~~~d~e~e~~l~~~~~ag~~~v~~~~l~~~~ 225 (297) T COG1533 174 ALKELSEAGIPVGLFVAPIIPGLNDEELERILEAAAEAGARVVVYGTLRLRL 225 (297) T ss_pred HHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCH T ss_conf 9999998798489998553078875889999999997577413631330457 |
|
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
---|
Probab=98.08 E-value=0.00019 Score=49.66 Aligned_cols=203 Identities=14% Similarity=0.212 Sum_probs=112.6 Q ss_pred CC-EEEEEECCCCCCCCCCCC-CEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHH Q ss_conf 85-499994065118376577-3024578866288999999999999987618950589996288888789999999997 Q gi|254780628|r 17 NS-LGVYVHWPFCVKKCPYCD-FNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILD 94 (395) Q Consensus 17 ~~-l~lYihiPFC~~~C~yC~-f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~ 94 (395) T Consensus 33 ~g~~~~~vf~~GCnlrC~~C~N~~~~~~~~~~~~~~~~~e~l~~~~~-----~~~~~~gvt~SGGEP~~q-~e~~~~~~~ 106 (260) T COG1180 33 PGSIRLSVFLQGCNLRCPYCQNPEISQRGREVSGEEVSPEVLVDKAF-----YSESGGGVTFSGGEPTLQ-AEFALDLLR 106 (260) T ss_pred CCCEEEEEEECCCCCCCCCCCCHHHHHCCCCCCHHHCCHHHHHHHHH-----HCCCCCEEEEECCHHHHH-HHHHHHHHH T ss_conf 98449999878989989989794676065656564578989999874-----316998899989604443-999999999 Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHH-HHHHHCCCCCHHHHHHHHHHHCCCCC--C Q ss_conf 66404764443321133210410023477663034541143234332013-45542244313478999986302444--3 Q gi|254780628|r 95 GIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQS-LRFLGRNHNASEAIAAIHLARNIFPR--M 171 (395) Q Consensus 95 ~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~-l~~~~R~~~~~~~~~~~~~~~~~~~~--v 171 (395) T Consensus 107 ~ake~-Gl~----~~l~Tn-G~~~~~~~~~l~~~-~D~v~~DlK~~~~~~yr~~tg~--~~~~vl~~~~~l~~~g~~ve~ 177 (260) T COG1180 107 AAKER-GLH----VALDTN-GFLPPEALEELLPL-LDAVLLDLKAFDDELYRKLTGA--DNEPVLENLELLADLGVHVEI 177 (260) T ss_pred HHHHC-CCE----EEEECC-CCCCHHHHHHHHHH-CCCEEEECCCCCHHHHHHHHCC--CHHHHHHHHHHHHHCCCEEEE T ss_conf 99987-990----899768-99882689999974-2314884066887888987568--716889999998617983999 Q ss_pred CCCCCCCCCCC--CCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 33210002585--43221112788753180012346468825960001454498021103567889998655788 Q gi|254780628|r 172 SFDLIYALPKQ--TMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITS 244 (395) Q Consensus 172 ~iDli~GlPgq--t~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~ 244 (395) T Consensus 178 r~lvi---Pg~~d~~e~i~~i~~~i~~~~~~----~p~~~l---~fhp~~~~~~~p~~~~~~le~~~~~a~~~~~ 242 (260) T COG1180 178 RTLVI---PGYNDDEEEIRELAEFIADLGPE----IPIHLL---RFHPDYKLKDLPPTPVETLEEAKKLAKEEGL 242 (260) T ss_pred EEEEC---CCCCCCHHHHHHHHHHHHHCCCC----CCEEEE---CCCCCHHCCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 88733---89889999999999999730866----655875---6687401135799928889988877899988 |
|
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme; InterPro: IPR012838 Members of this family are iron-sulphur proteins with a radical-SAM domain | Back alignment and domain information |
---|
Probab=97.91 E-value=0.00018 Score=49.77 Aligned_cols=209 Identities=12% Similarity=0.191 Sum_probs=131.0 Q ss_pred EEEEEECCCCCCCCCCCCCEEEECCC-CCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHH Q ss_conf 49999406511837657730245788-66288999999999999987618950589996288888789999999997664 Q gi|254780628|r 19 LGVYVHWPFCVKKCPYCDFNSHVRRY-KVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIA 97 (395) Q Consensus 19 l~lYihiPFC~~~C~yC~f~~~~~~~-~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~ 97 (395) T Consensus 16 ~RFvvFmqGC~lRC~YCh-NPDTW~~~~~G~~~t~~el~~e~~~yk~f~~~s-GGGvT~SGGEP-llQ~~F~~~~f~~cK 92 (243) T TIGR02493 16 IRFVVFMQGCPLRCQYCH-NPDTWDLKKGGTEVTVEELIKEVKSYKDFFKAS-GGGVTVSGGEP-LLQPEFVLELFKACK 92 (243) T ss_pred CEEEEEECCHHHHHHHCC-CCCCCCCCCCCCEECHHHHHHHHHHHHHHHHCC-CCCEEEECCCC-CCCHHHHHHHHHHHH T ss_conf 068775435367753058-987433588781207899999999899887207-99589868950-201699999999999 Q ss_pred HCCCCCCCCCCCCCCCCC---CCH--HHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCC-- Q ss_conf 047644433211332104---100--2347766303454114323433201345542244313478999986302444-- Q gi|254780628|r 98 KNWTVSSNVEITIEANPS---SVE--VNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPR-- 170 (395) Q Consensus 98 ~~~~~~~~~e~t~E~~P~---~~~--~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~-- 170 (395) T Consensus 93 ~~~GiH----TclDT~GGCftf~~~~~~~~~~lLe~-TDLvLLDiK~~~~~~y~~LTg~~~~~ptl~Fa~~L~~~~kP~W 167 (243) T TIGR02493 93 KELGIH----TCLDTSGGCFTFLGGFTEAADELLEV-TDLVLLDIKHIDPEKYKKLTGVKSLEPTLEFAKYLAKRNKPIW 167 (243) T ss_pred HHCCCE----EEEECCCCHHHHHCCHHHHHHHHHHC-CCEEEEECCCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCEE T ss_conf 856983----88744883433412124899975100-5878862343681240001456775245899999996589889 Q ss_pred ---CCCCCCCCCCCCCCC--CCCCCHHHHHHC-C-CCCEEEEEE---EEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHH Q ss_conf ---333210002585432--211127887531-8-001234646---882596000145449802110356788999865 Q gi|254780628|r 171 ---MSFDLIYALPKQTMT--QWEMELQRALSY-A-VDHLSLYQL---TIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQ 240 (395) Q Consensus 171 ---v~iDli~GlPgqt~e--~~~~~l~~~~~l-~-p~~is~Y~l---~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~ 240 (395) T Consensus 168 iRYVlV------PGyTD~~eDi~~l~~fv~~~~~averVe~LPYH~LG~~KWe~~g~~Y~L~~~~~p~~e~~~~----~~ 237 (243) T TIGR02493 168 IRYVLV------PGYTDSEEDIEALAEFVKTLPNAVERVEVLPYHQLGVYKWEALGIEYKLEGVKPPNKEQLER----IK 237 (243) T ss_pred EEEEEC------CCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHH----HH T ss_conf 999865------88779989999999999746992799865688602110387668975888889879899999----99 Q ss_pred HHHHH Q ss_conf 57887 Q gi|254780628|r 241 SITSA 245 (395) Q Consensus 241 e~L~~ 245 (395) T Consensus 238 ~~~~~ 242 (243) T TIGR02493 238 EIFKE 242 (243) T ss_pred HHHHC T ss_conf 99732 |
A single glycine residue in 2.3.1.54 from EC, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of a proton from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue .; GO: 0043365 [formate-C-acetyltransferase]-activating enzyme activity. |
>TIGR01210 TIGR01210 conserved hypothetical protein TIGR01210; InterPro: IPR005909 This family of exclusively archaeal proteins has no characterised close homologs | Back alignment and domain information |
---|
Probab=97.72 E-value=0.00076 Score=45.60 Aligned_cols=211 Identities=20% Similarity=0.322 Sum_probs=136.5 Q ss_pred CCCCEEEEEECCCCCC-C----CCCCCCEEEECCC-CCCHHHHHHHHHHHHHHHHHHHCC--CEEEEEEECCCC--CCCC Q ss_conf 9885499994065118-3----7657730245788-662889999999999999876189--505899962888--8878 Q gi|254780628|r 15 GSNSLGVYVHWPFCVK-K----CPYCDFNSHVRRY-KVGQENFIQSFLTEMQWMRQLTGP--RSISSIFFGGGT--PSLI 84 (395) Q Consensus 15 ~~~~l~lYihiPFC~~-~----C~yC~f~~~~~~~-~~~~~~y~~~l~~Ei~~~~~~~~~--~~~~~iy~GGGT--Ps~l 84 (395) T Consensus 13 ~~~~~~~~~~~~gc~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~~~ 92 (329) T TIGR01210 13 PGKSLTVILRTRGCYWYRIGGGCYLCGYLADAPPGGKVTEENLLGQFDYALEKLKGEGGDLKDFVLKIFTSGSFLDDREV 92 (329) T ss_pred CCCEEEEEEECCCCCHHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCHHHC T ss_conf 21014677614552001103540000122113454421488999999999876420133344422002204442350103 Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC--C-CCEEEECCCCCCHHH-HHHHCCCCCHHHHHH Q ss_conf 999999999766404764443321133210410023477663034--5-411432343320134-554224431347899 Q gi|254780628|r 85 EPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAG--V-NRISLGVQSLEEQSL-RFLGRNHNASEAIAA 160 (395) Q Consensus 85 ~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~G--v-~RiS~GvQs~~~~~l-~~~~R~~~~~~~~~~ 160 (395) T Consensus 93 p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~ 169 (329) T TIGR01210 93 PPGTRGYLFEKLAER---DNLKKLVVESRPEFIDEEKLEELRKVGEGLPLEVGVGLETANDRVRELCINKGFTFEDFVDA 169 (329) T ss_pred CHHHHHHHHHHHHHH---HHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCHHHHHHH T ss_conf 247889999987654---34677765300111033456678775246420001021000246777654214516789999 Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCC----CCCCCCHHHHHHCC-CCCEEEEEEEEECCCEEHHHHHCCCCCCCH Q ss_conf 998630244433321000258543----22111278875318-001234646882596000145449802110 Q gi|254780628|r 161 IHLARNIFPRMSFDLIYALPKQTM----TQWEMELQRALSYA-VDHLSLYQLTIEKGTLFYKMHKDGDLVLPS 228 (395) Q Consensus 161 ~~~~~~~~~~v~iDli~GlPgqt~----e~~~~~l~~~~~l~-p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~ 228 (395) T Consensus 170 ~~~~~~~~~~~~~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~gc~~~~~~~~~~~~~~~~~~~~~~~~~~pp~ 242 (329) T TIGR01210 170 AELARNYGAGVKAYLLLKPPFLSEKEAIADALSSIRKCKPYTGCDTVSLNPTNVQKGTLVEKLWKRGLYRPPW 242 (329) T ss_pred HHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHCCCCCCHH T ss_conf 9988752763012111124100204678899988886532035421220200010346788887526778605 |
An apparent similarity between the central region of this family and the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN has been observed.. |
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only] | Back alignment and domain information |
---|
Probab=97.62 E-value=0.00051 Score=46.77 Aligned_cols=165 Identities=15% Similarity=0.235 Sum_probs=103.8 Q ss_pred CCCCCCCCCCCCCEEEE------CCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHH Q ss_conf 06511837657730245------788662889999999999999876189505899962888887899999999976640 Q gi|254780628|r 25 WPFCVKKCPYCDFNSHV------RRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAK 98 (395) Q Consensus 25 iPFC~~~C~yC~f~~~~------~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~ 98 (395) T Consensus 35 TG~C~~~CfYCPvs~~r~gkdviyaNErpV~-~~eDii~ea~~~~a~--Ga-----siTGGdPl~-~ieR~~~~ir~LK~ 105 (353) T COG2108 35 TGLCNRSCFYCPVSDERKGKDVIYANERPVK-SVEDIIEEAKLMDAL--GA-----SITGGDPLL-EIERTVEYIRLLKD 105 (353) T ss_pred ECCCCCCCCCCCCCHHHCCCCCEEECCCCCC-CHHHHHHHHHHHCCC--CC-----CCCCCCHHH-HHHHHHHHHHHHHH T ss_conf 5566898525768777648863311563147-578899999972466--65-----332787489-99999999999987 Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCC Q ss_conf 47644433211332104100234776630345411432343320134554224431347899998630244433321000 Q gi|254780628|r 99 NWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYA 178 (395) Q Consensus 99 ~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~G 178 (395) T Consensus 106 efG--~~fHiHLYT~g~~~~~e~l~~L~eAGLDEIRfHp~~~~~---------~~~e~~i~~l~~A~~~g~dvG~E-iPa 173 (353) T COG2108 106 EFG--EDFHIHLYTTGILATEEALKALAEAGLDEIRFHPPRPGS---------KSSEKYIENLKIAKKYGMDVGVE-IPA 173 (353) T ss_pred HHC--CCEEEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCC---------CCCHHHHHHHHHHHHHCCCCEEE-CCC T ss_conf 635--320599840665688899999986798759946897211---------23189999999999828551043-278 Q ss_pred CCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEEC Q ss_conf 258543221112788753180012346468825 Q gi|254780628|r 179 LPKQTMTQWEMELQRALSYAVDHLSLYQLTIEK 211 (395) Q Consensus 179 lPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~ 211 (395) T Consensus 174 ipg~e~-~i~e~~~~~~~~~~~FlNiNELE~sE 205 (353) T COG2108 174 IPGEEE-AILEFAKALDENGLDFLNINELEFSE 205 (353) T ss_pred CCCHHH-HHHHHHHHHHHCCCCEEEEEEEEECC T ss_conf 865688-99999999876066534210044052 |
|
>KOG2900 consensus | Back alignment and domain information |
---|
Probab=97.35 E-value=0.0014 Score=43.90 Aligned_cols=191 Identities=13% Similarity=0.157 Sum_probs=111.6 Q ss_pred EEEECCCCCCCCCCCCCEEEECCCCCCH-HHHHHHHHHHHHHHHHHHCCCEEEEEEECCCC-CCCCCHHHHHHHHHHHHH Q ss_conf 9994065118376577302457886628-89999999999999876189505899962888-887899999999976640 Q gi|254780628|r 21 VYVHWPFCVKKCPYCDFNSHVRRYKVGQ-ENFIQSFLTEMQWMRQLTGPRSISSIFFGGGT-PSLIEPQNIALILDGIAK 98 (395) Q Consensus 21 lYihiPFC~~~C~yC~f~~~~~~~~~~~-~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGT-Ps~l~~~~l~~ll~~i~~ 98 (395) T Consensus 87 lsIKtGGCsEDCkYCaQSSRy~TGvKA~klmk~DeVi~~Ak~AK~~-GSTR---FCmGaAWRD~~GRk~~fk~IlE~ike 162 (380) T KOG2900 87 LSIKTGGCSEDCKYCAQSSRYDTGVKAEKLMKVDEVIKEAKEAKRN-GSTR---FCMGAAWRDMKGRKSAFKRILEMIKE 162 (380) T ss_pred EEEECCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHC-CCCE---EECCHHHHHHCCCHHHHHHHHHHHHH T ss_conf 8750588651221101003465440278774099999999998863-8861---43115655311414589999999999 Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCC Q ss_conf 47644433211332104100234776630345411432343320134554224431347899998630244433321000 Q gi|254780628|r 99 NWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYA 178 (395) Q Consensus 99 ~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~G 178 (395) T Consensus 163 vr~Mg--mEvCv--TLGMv~~qQAkeLKdAGLTAYNHNlDTSREyYskvIt-TRtYDdRL~Ti~nvr~aGikvCsGGIlG 237 (380) T KOG2900 163 VRDMG--MEVCV--TLGMVDQQQAKELKDAGLTAYNHNLDTSREYYSKVIT-TRTYDDRLQTIKNVREAGIKVCSGGILG 237 (380) T ss_pred HHCCC--CEEEE--EECCCCHHHHHHHHHCCCEECCCCCCCHHHHHCCCCE-ECCHHHHHHHHHHHHHHCCEECCCCCCC T ss_conf 87288--10044--3144138889988854643003676424666400123-0226778888888987263331465320 Q ss_pred CCCCCCCCCCCCHHHHHHC--CCCCEEEEEEEEECCCEEHHHHHC Q ss_conf 2585432211127887531--800123464688259600014544 Q gi|254780628|r 179 LPKQTMTQWEMELQRALSY--AVDHLSLYQLTIEKGTLFYKMHKD 221 (395) Q Consensus 179 lPgqt~e~~~~~l~~~~~l--~p~~is~Y~l~i~~~t~l~~~~~~ 221 (395) T Consensus 238 L-GE~e~DriGlihtLatmp~HPESvPiN~LvaikGTP~~d~~~k 281 (380) T KOG2900 238 L-GESEDDRIGLIHTLATMPPHPESVPINRLVAIKGTPMADEKSK 281 (380) T ss_pred C-CCCCCCEEEEEEEECCCCCCCCCCCCCEEEECCCCCCCHHHCC T ss_conf 4-6655560344431014899976665114774388642032136 |
|
>PRK00955 hypothetical protein; Provisional | Back alignment and domain information |
---|
Probab=97.35 E-value=0.0053 Score=40.06 Aligned_cols=194 Identities=15% Similarity=0.153 Sum_probs=112.9 Q ss_pred EEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEE-EECCCCC---------------- Q ss_conf 49999406511837657730245788662889999999999999876189505899-9628888---------------- Q gi|254780628|r 19 LGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSI-FFGGGTP---------------- 81 (395) Q Consensus 19 l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i-y~GGGTP---------------- 81 (395) T Consensus 293 fSit~hR-GCfGgCsFCaIt~HQGr~I~--sRS~~SIl~E~~~~~~~-p~FkG-~IsDvGGPTANmy~~~C~~~~~~g~C 367 (599) T PRK00955 293 FSITSHR-GCFGGCSFCAITFHQGRFIQ--SRSKESILREAKELTQM-PDFKG-YIHDVGGPTANFRKMACKKQEKCGAC 367 (599) T ss_pred HEEEECC-CCCCCCCCCCCCCCCCCCEE--ECCHHHHHHHHHHHHHC-CCCCE-EECCCCCCCHHHCCCCCCCHHHCCCC T ss_conf 3010247-62567821022011787034--44889999999999738-89877-87138982465430647980202889 Q ss_pred --------CCC-----CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC----CHHHHHHHHHHCCC-CCEEEECCCCCCH Q ss_conf --------878-----99999999976640476444332113321041----00234776630345-4114323433201 Q gi|254780628|r 82 --------SLI-----EPQNIALILDGIAKNWTVSSNVEITIEANPSS----VEVNNFQGYRKAGV-NRISLGVQSLEEQ 143 (395) Q Consensus 82 --------s~l-----~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~----~~~~~l~~l~~~Gv-~RiS~GvQs~~~~ 143 (395) T Consensus 368 ~~~~Cl~P~~C~nL~~dh~~~~~LLrk~r~lpgVKkv-fi~SGiRyDl~l~d~~~~yl~eL~~~HvsGqLKVAPEH~~~~ 446 (599) T PRK00955 368 KNKQCLFPKPCKNLDVDHTEYLDLLRKVRKLPGVKKV-FIRSGIRYDYLLHDKNDEFFKELCEHHVSGQLKVAPEHISDR 446 (599) T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEE-EECCHHHHHHHCCCCCHHHHHHHHHHHCCCEEEECCCCCCHH T ss_conf 9967899988889878838999999998548997677-741226555551368869999999770787067577546837 Q ss_pred HHHHHHCCC--CCHHHHHHHHHHH-CCCCC--CCCCCCCCCCCCCCCCCCCCHHHHHHC--CCCCEEEEEEEEECCCEEH Q ss_conf 345542244--3134789999863-02444--333210002585432211127887531--8001234646882596000 Q gi|254780628|r 144 SLRFLGRNH--NASEAIAAIHLAR-NIFPR--MSFDLIYALPKQTMTQWEMELQRALSY--AVDHLSLYQLTIEKGTLFY 216 (395) Q Consensus 144 ~l~~~~R~~--~~~~~~~~~~~~~-~~~~~--v~iDli~GlPgqt~e~~~~~l~~~~~l--~p~~is~Y~l~i~~~t~l~ 216 (395) T Consensus 447 VL~~M~KP~~~~~~~F~~~F~~~~k~~Gk~QylvPY~issHPGct~~dm~~La~~lk~~~~~peQVQd--F~PTP~T~sT 524 (599) T PRK00955 447 VLKYMGKPSREVYDKFVKKFDRINKKLGKKQFLVPYLMSSHPGSTLEDAIELAEYLKDLGYQPEQVQD--FYPTPGTLST 524 (599) T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHCEE--EECCCCHHHH T ss_conf 88974799818999999999999998589730477788169998999999999999973999777311--0078518988 Q ss_pred HHHH Q ss_conf 1454 Q gi|254780628|r 217 KMHK 220 (395) Q Consensus 217 ~~~~ 220 (395) T Consensus 525 ~MYy 528 (599) T PRK00955 525 TMYY 528 (599) T ss_pred HHHH T ss_conf 8988 |
|
>PRK01254 hypothetical protein; Provisional | Back alignment and domain information |
---|
Probab=97.28 E-value=0.0073 Score=39.10 Aligned_cols=188 Identities=13% Similarity=0.097 Sum_probs=108.9 Q ss_pred EEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEE-EECCCC----------------- Q ss_conf 49999406511837657730245788662889999999999999876189505899-962888----------------- Q gi|254780628|r 19 LGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSI-FFGGGT----------------- 80 (395) Q Consensus 19 l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i-y~GGGT----------------- 80 (395) T Consensus 374 fSv~~~R-GCfGgCsFCaIt~HQGR~I--qSRS~eSIl~E~~~i~~k~p~FkG-~IsDvGGPTANMy~~~C~~~~~~~~C 449 (742) T PRK01254 374 FSVNIMR-GCFGGCSFCSITEHEGRII--QSRSEESIINEIEAIRDKVPGFTG-VISDLGGPTANMYRLGCKSPKAEQTC 449 (742) T ss_pred EEEEECC-CCCCCCCEEEEEECCCCEE--EECCHHHHHHHHHHHHHHCCCCCE-EECCCCCCCHHHCCCCCCCCHHCCCC T ss_conf 3431348-5445784132230168633--432789999999999964899867-76358871365431547981100789 Q ss_pred -------CCCC-----CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC--CCHHHHHHHHHHCCC-CCEEEECCCCCCHHH Q ss_conf -------8878-----9999999997664047644433211332104--100234776630345-411432343320134 Q gi|254780628|r 81 -------PSLI-----EPQNIALILDGIAKNWTVSSNVEITIEANPS--SVEVNNFQGYRKAGV-NRISLGVQSLEEQSL 145 (395) Q Consensus 81 -------Ps~l-----~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~--~~~~~~l~~l~~~Gv-~RiS~GvQs~~~~~l 145 (395) T Consensus 450 ~r~sCl~P~iC~nL~~dH~~~i~Llrk~R~lpGVKkV-fI~SGiRyDLa~~d~eylkELv~hHVsGqLKVAPEH~~~~vL 528 (742) T PRK01254 450 RRLSCVYPDICPHLDTDHSPTIDLYRRARDLKGIKKI-LIASGVRYDLAVEDPEYVKELVTHHVGGYLKIAPEHTEEGPL 528 (742) T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEE-EECCCHHHHHHHCCHHHHHHHHHHHCCCCEEECCCCCCHHHH T ss_conf 9977899877888878809999999998628986555-531205455553388999999987368706657654685899 Q ss_pred HHHHCCC--CCHHHHHHHHHHH-CCCCC--CCCCCCCCCCCCCCCCCCCCHHHHHH--CCCCCEEEEEEEEECCC Q ss_conf 5542244--3134789999863-02444--33321000258543221112788753--18001234646882596 Q gi|254780628|r 146 RFLGRNH--NASEAIAAIHLAR-NIFPR--MSFDLIYALPKQTMTQWEMELQRALS--YAVDHLSLYQLTIEKGT 213 (395) Q Consensus 146 ~~~~R~~--~~~~~~~~~~~~~-~~~~~--v~iDli~GlPgqt~e~~~~~l~~~~~--l~p~~is~Y~l~i~~~t 213 (395) T Consensus 529 ~~M~KP~~~~y~rF~~~F~~~sk~~GK~QyLiPYfisaHPG~t~~Dm~~LA~~lk~~~~~peQVQdF--~PTP~t 601 (742) T PRK01254 529 SKMMKPGMGSYDRFKELFDKYSKEAGKEQYLIPYFISAHPGTTDEDMVNLALWLKKNRFRLDQVQNF--YPSPMA 601 (742) T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHCEEE--ECCCCH T ss_conf 9862998689999999999999985897036877870689989999999999999739997563120--278617 |
|
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein; InterPro: IPR012840 This enzyme is a member of the radical-SAM family | Back alignment and domain information |
---|
Probab=97.02 E-value=0.0036 Score=41.17 Aligned_cols=144 Identities=20% Similarity=0.364 Sum_probs=91.5 Q ss_pred CCCCCCCCCCE-EEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCC Q ss_conf 11837657730-24578866288999999999999987618950589996288888789999999997664047644433 Q gi|254780628|r 28 CVKKCPYCDFN-SHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNV 106 (395) Q Consensus 28 C~~~C~yC~f~-~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~ 106 (395) T Consensus 26 Cn~~CpyCH-N~~~~~~~~~~~~~~~e~~~~~L~~R~~-----ll~gVVitGGEptlQ-~~eL~d~~~~v~~nlGf~--- 95 (220) T TIGR02495 26 CNLKCPYCH-NSELLIPRKGSGEIELEELLEFLRRRQG-----LLDGVVITGGEPTLQ-AGELGDFLREVRENLGFE--- 95 (220) T ss_pred CCCCCCCCC-CCCCHHHHCCCCCCCHHHHHHHHHHCCC-----CEEEEEEECCCHHHH-HHHHHHHHHHHHHHCCCE--- T ss_conf 889987888-8764002005761027779999873134-----210578728753236-777899999999865927--- Q ss_pred CCCCCCCCCCCHHHHHHHHHHCC-CCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC Q ss_conf 21133210410023477663034-54114323433201345542244313478999986302444333210002585432 Q gi|254780628|r 107 EITIEANPSSVEVNNFQGYRKAG-VNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMT 185 (395) Q Consensus 107 e~t~E~~P~~~~~~~l~~l~~~G-v~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e 185 (395) T Consensus 96 -vkLdT--NG~~P~~L~~ll~~gLvD~va~D~Kap~~~y~~~~G~~~~~~~----------~~tnis-------PsrtPe 155 (220) T TIGR02495 96 -VKLDT--NGSNPRVLEELLEEGLVDYVAMDVKAPPEKYGELYGREKNAAK----------KETNIS-------PSRTPE 155 (220) T ss_pred -EEEEC--CCCCHHHHHHHHHCCCCCEEEEECCCCHHHCCEEECCCCCCCC----------CCCCCC-------CCCCHH T ss_conf -85606--7886789999986048757875014786567400063321003----------532468-------775658 Q ss_pred ----CCCCCHHHHHHCC----CCC Q ss_conf ----2111278875318----001 Q gi|254780628|r 186 ----QWEMELQRALSYA----VDH 201 (395) Q Consensus 186 ----~~~~~l~~~~~l~----p~~ 201 (395) T Consensus 156 ~l~~~~~~SlEil~~s~GCGGi~f 179 (220) T TIGR02495 156 KLLKNILKSLEILLESGGCGGIEF 179 (220) T ss_pred HHHHHHHHHHHHHHHCCCCCCCCC T ss_conf 999998755675542478688653 |
It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, IPR009161 from INTERPRO) and presumably fulfils the identical function as NrdG , , which utilises S-adenosyl methionine, an iron-sulphur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centred radical in NrdD.. |
>KOG2672 consensus | Back alignment and domain information |
---|
Probab=96.26 E-value=0.013 Score=37.44 Aligned_cols=173 Identities=16% Similarity=0.214 Sum_probs=103.0 Q ss_pred EEEEEECCCCCCCCCCCCCEEEECCCCC-CHHHHHHHHHHHHHHHHHHHCCC-EEEEEE-----ECCCCCCCCCHHHHHH Q ss_conf 4999940651183765773024578866-28899999999999998761895-058999-----6288888789999999 Q gi|254780628|r 19 LGVYVHWPFCVKKCPYCDFNSHVRRYKV-GQENFIQSFLTEMQWMRQLTGPR-SISSIF-----FGGGTPSLIEPQNIAL 91 (395) Q Consensus 19 l~lYihiPFC~~~C~yC~f~~~~~~~~~-~~~~y~~~l~~Ei~~~~~~~~~~-~~~~iy-----~GGGTPs~l~~~~l~~ 91 (395) T Consensus 112 ATIMlmGDTCTRGCRFCsVKTsR~PpPlDp~EPe-NT----AeAIasWgl~YiVlTSVDRDDlpDgG-------a~HiAk 179 (360) T KOG2672 112 ATIMLMGDTCTRGCRFCSVKTSRNPPPLDPNEPE-NT----AEAIASWGLDYIVLTSVDRDDLPDGG-------ANHIAK 179 (360) T ss_pred EEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCC-CH----HHHHHHCCCCEEEEEECCCCCCCCCC-------HHHHHH T ss_conf 8988634743467520121037889677999864-48----99999718886999711456476752-------278999 Q ss_pred HHHHHHHCCCCCCCCCCCCCC-CCCCC-HHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCC Q ss_conf 997664047644433211332-10410-0234776630345411432343320134554224431347899998630244 Q gi|254780628|r 92 ILDGIAKNWTVSSNVEITIEA-NPSSV-EVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFP 169 (395) Q Consensus 92 ll~~i~~~~~~~~~~e~t~E~-~P~~~-~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~ 169 (395) T Consensus 180 TVq~iK~k~-----p~ilvE~L~pDF~Gd~~~Ve~va~SGLDV~AHNvETVe~Ltp~VRD~RA~yrQSL~VLk~aK~~~P 254 (360) T KOG2672 180 TVQKIKEKA-----PEILVECLTPDFRGDLKAVEKVAKSGLDVYAHNVETVEELTPFVRDPRANYRQSLSVLKHAKEVKP 254 (360) T ss_pred HHHHHHHHC-----CCCCHHHCCCCCCCCHHHHHHHHHCCCCCEECCHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHCC T ss_conf 999998528-----423213247554573479999985374000011140876023331854016776999998775188 Q ss_pred C-CCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEE Q ss_conf 4-33321000258543221112788753180012346468 Q gi|254780628|r 170 R-MSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLT 208 (395) Q Consensus 170 ~-v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~ 208 (395) T Consensus 255 ~litktsiMlglgetdeei~~tl~dLr~~~vdv~t~gqym 294 (360) T KOG2672 255 GLITKTSIMLGLGETDEEIKQTLKDLRAADVDVVTFGQYM 294 (360) T ss_pred CCEEHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEECCCCC T ss_conf 7012021000267888999999999997197088400005 |
|
>KOG2876 consensus | Back alignment and domain information |
---|
Probab=91.23 E-value=0.2 Score=29.56 Aligned_cols=178 Identities=18% Similarity=0.298 Sum_probs=104.6 Q ss_pred EEEEECCC---CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHH Q ss_conf 99994065---118376577302457886628899999999999998761895058999628888878999999999766 Q gi|254780628|r 20 GVYVHWPF---CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGI 96 (395) Q Consensus 20 ~lYihiPF---C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i 96 (395) T Consensus 10 htyLrislte~cnlrc~ycMpse--g~~l~pk~~~lav--~eilrl~~lF~~qgv~knrLtggeptIr--~d~~~i~~g~ 83 (323) T KOG2876 10 HTYLRISLTEKCNLRCQYCMPSE--GVPLKPKRKLLAV--SEILRLAGLFAPQGVDKNRLTGGEPLIR--QDIVPIVAGL 83 (323) T ss_pred HHHHHHHHHHCCCCCCCCCCHHC--CCCCCCCHHHHHH--HHHHHHHHHHHHHHHHHHHCCCCCCCCC--CCCCCCCHHH T ss_conf 55210655520073121201200--7757641000002--4467764356675501554057887410--4643101444 Q ss_pred HHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC--CC-CCCC Q ss_conf 40476444332113321041002347766303454114323433201345542244313478999986302--44-4333 Q gi|254780628|r 97 AKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI--FP-RMSF 173 (395) Q Consensus 97 ~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~--~~-~v~i 173 (395) T Consensus 84 ~~---l~gLks~~ITtn-g~vl~R~lp~lhkaglssiNiSldtl~~aKfa~~~rr~g~v~V~~~iq~a~~lgy~pvkvn~ 159 (323) T KOG2876 84 SS---LPGLKSIGITTN-GLVLARLLPQLHKAGLSSINISLDTLVRAKFAKLTRRKGFVKVWASIQLAIELGYNPVKVNC 159 (323) T ss_pred HC---CCHHHHHCEECC-CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCEEE T ss_conf 12---300144150126-22677661787772434000356655577777776311299999887677650778741225 Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEEC Q ss_conf 21000258543221112788753180012346468825 Q gi|254780628|r 174 DLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEK 211 (395) Q Consensus 174 Dli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~ 211 (395) T Consensus 160 v~~k~~n~~ei~----Dfv~~tr~~p~DVrfIe~mpf~ 193 (323) T KOG2876 160 VVMKGLNEDEVF----DFVLLTRMRPLDVRFIEFMPFD 193 (323) T ss_pred EEEECCCCCCCC----CEEEECCCCCCCEEEEEECCCC T ss_conf 676336787023----2133068987546889942567 |
|
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
---|
Probab=90.36 E-value=1.5 Score=23.74 Aligned_cols=148 Identities=17% Similarity=0.235 Sum_probs=73.7 Q ss_pred CCCCCCCCCC--CEEEECCCCCC---HHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCC Q ss_conf 5118376577--30245788662---889999999999999876189505899962888887899999999976640476 Q gi|254780628|r 27 FCVKKCPYCD--FNSHVRRYKVG---QENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWT 101 (395) Q Consensus 27 FC~~~C~yC~--f~~~~~~~~~~---~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~ 101 (395) T Consensus 50 GCnl~CayCw~y~r~~~~~rag~f~~P~eVaeR-L~ei~------K~~g~d~vRiSG~EP~l~-~EHvlevIeLl----- 116 (228) T COG5014 50 GCNLLCAYCWNYFRNLRPKRAGDFLSPEEVAER-LLEIS------KKRGCDLVRISGAEPILG-REHVLEVIELL----- 116 (228) T ss_pred CCCEEEHHHHHHHHCCCCCCCCCCCCHHHHHHH-HHHHH------HHCCCCEEEEECCCCCCC-HHHHHHHHHHC----- T ss_conf 533123876666603872213021597999999-99998------855886899628986446-89999999863----- Q ss_pred CCCCCCCCCCCCCCCC--HHHHHHHHHH--CCCCCEEEECCCCCCHHHHHH-HCCCCCHHH---HHHHHHHHCCCCCCCC Q ss_conf 4443321133210410--0234776630--345411432343320134554-224431347---8999986302444333 Q gi|254780628|r 102 VSSNVEITIEANPSSV--EVNNFQGYRK--AGVNRISLGVQSLEEQSLRFL-GRNHNASEA---IAAIHLARNIFPRMSF 173 (395) Q Consensus 102 ~~~~~e~t~E~~P~~~--~~~~l~~l~~--~Gv~RiS~GvQs~~~~~l~~~-~R~~~~~~~---~~~~~~~~~~~~~v~i 173 (395) T Consensus 117 --~~~tFvlETNG~~~g~drslv~el~nr~nv~vRVsv--KG~dpesF~kIT~a--sp~~F~~QL~aLr~L~~~g~rf~p 190 (228) T COG5014 117 --VNNTFVLETNGLMFGFDRSLVDELVNRLNVLVRVSV--KGWDPESFEKITGA--SPEYFRYQLKALRHLHGKGHRFWP 190 (228) T ss_pred --CCCEEEEEECCEEEECCHHHHHHHHCCCCEEEEEEE--CCCCHHHHHHHHCC--CHHHHHHHHHHHHHHHHCCCEEEE T ss_conf --476499975776883588899997137863999983--57988998987568--927899999999999846716510 Q ss_pred CCCCCCCCCCCCCCCCCHHHHHH Q ss_conf 21000258543221112788753 Q gi|254780628|r 174 DLIYALPKQTMTQWEMELQRALS 196 (395) Q Consensus 174 Dli~GlPgqt~e~~~~~l~~~~~ 196 (395) T Consensus 191 A~~~~f~~---Ed~~k~Lak~Lg 210 (228) T COG5014 191 AVVYDFFR---EDGLKELAKRLG 210 (228) T ss_pred HHHHCCCH---HHHHHHHHHHHC T ss_conf 14320351---366899998754 |
|
>pfam06969 HemN_C HemN C-terminal region | Back alignment and domain information |
---|
Probab=99.86 E-value=2.3e-21 Score=161.64 Aligned_cols=115 Identities=40% Similarity=0.655 Sum_probs=103.7 Q ss_pred CCCCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCHHHH Q ss_conf 21124441232043200115788615786542470257787753896333224549999899999996562379988899 Q gi|254780628|r 267 LNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEFLMMGLRLREGISVKDW 346 (395) Q Consensus 267 ~~Yw~~~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i~~~~~p~~~~~~Ls~~e~~~e~l~~~LR~~~Gid~~~~ 346 (395) T Consensus 1 l~YW~~~~yiG~G~gA~s~~~~~~--~r~~n~~~~~~Y~~~i~~~~~~~~~~~~ls~~d~~~e~ii~~LR~~~Gi~~~~~ 78 (118) T pfam06969 1 LGYWRGGDYLGLGPGAHSFIDGGG--VRYQNVKDLKAYLKAVEAGGLPIERGERLSPEDRLRERLILGLRLTEGLDLAAF 78 (118) T ss_pred CCCCCCCCEEEEECCEEEEECCCC--CEEEECCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCHHHH T ss_conf 977589981998068689974999--679936898999999863898624555389899999999999998589089999 Q ss_pred HHHHCCCHHHHH---HHHHHHCCCEEEEECCEEEECHHHHH Q ss_conf 988389964999---99999879949855989999567589 Q gi|254780628|r 347 EMLAGRNLDIEC---ERNLQRQGFIERVQFSRLRCTQRGMT 384 (395) Q Consensus 347 ~~~fg~~~~~~~---~~~L~~~Gli~~~~~~~l~lT~~G~~ 384 (395) T Consensus 79 ~~~~g~~~~~~~~~~l~~l~~~Gll~-~~~~~l~lT~~G~l 118 (118) T pfam06969 79 EQRFGLDFEEEYEPLLEKLQEDGLLE-LDDGRLRLTPRGRL 118 (118) T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCEE-EECCEEEECCCCCC T ss_conf 99989499998799999999889989-73999997868569 |
Members of this family are all oxygen-independent coproporphyrinogen-III oxidases (HemN). This enzyme catalyses the oxygen-independent conversion of coproporphyrinogen-III to protoporphyrinogen-IX, one of the last steps in haem biosynthesis. The function of this domain is unclear, but comparison to other proteins containing a radical SAM domain (pfam04055) suggest it may be a substrate binding domain. |
>pfam04055 Radical_SAM Radical SAM superfamily | Back alignment and domain information |
---|
Probab=99.64 E-value=1.1e-15 Score=123.96 Aligned_cols=163 Identities=24% Similarity=0.380 Sum_probs=122.2 Q ss_pred ECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCC Q ss_conf 40651183765773024578866288999999999999987618950589996288888789999999997664047644 Q gi|254780628|r 24 HWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVS 103 (395) Q Consensus 24 hiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~ 103 (395) T Consensus 3 ~~~gC~~~C~fC~~~~~~-~~~~~~~~~~~~i~~~~~~~~----~~~~~~i~~~gg~p~~~~-~~~~~~~~~~~~~~--~ 74 (165) T pfam04055 3 ITPGCNLRCTYCAFPSIR-ARGKGRELSPEEILEEAKELA----RLGVEVVILTGGEPLLLP-DLVELLERLLKLEE--L 74 (165) T ss_pred ECCCCCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHH----HCCCEEEEEECCCCCCCH-HHHHHHHHHHHHCC--C T ss_conf 893748779689997857-888652269999999998887----459859999316766652-77777888765314--6 Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC Q ss_conf 43321133210410023477663034541143234332013455422443134789999863024443332100025854 Q gi|254780628|r 104 SNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQT 183 (395) Q Consensus 104 ~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt 183 (395) T Consensus 75 ~~~~~~~~t~~~~~~~~~~~~l~~~g~~~i~~~ie~~~~~~~~~~~~~~~~~~~~~~i~~~~~~gi~~~~~~i~~~~~e~ 154 (165) T pfam04055 75 EGIRITLETNGTLLDEELLEELKEAGLDRVSISLQSGDDEVLKIINRGHTFEEVLEALELLREAGIPVVVDNIVGLPGEN 154 (165) T ss_pred CCEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCC T ss_conf 76489999851433104568999719852224635599999998579999899999999999879978899999799999 Q ss_pred CCCCCCCHHHH Q ss_conf 32211127887 Q gi|254780628|r 184 MTQWEMELQRA 194 (395) Q Consensus 184 ~e~~~~~l~~~ 194 (395) T Consensus 155 ~~~~~~~~~~i 165 (165) T pfam04055 155 DEDLEETLELL 165 (165) T ss_pred HHHHHHHHHHC T ss_conf 99999996039 |
Radical SAM proteins catalyse diverse reactions, including unusual methylations, isomerisation, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. |
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed | Back alignment and domain information |
---|
Probab=98.77 E-value=2.5e-07 Score=68.69 Aligned_cols=147 Identities=13% Similarity=0.294 Sum_probs=105.0 Q ss_pred CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEE-EEECCCCCCCCCHHHHHHHHHHHHHCCCCCCC Q ss_conf 51183765773024578866288999999999999987618950589-99628888878999999999766404764443 Q gi|254780628|r 27 FCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISS-IFFGGGTPSLIEPQNIALILDGIAKNWTVSSN 105 (395) Q Consensus 27 FC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~-iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~ 105 (395) T Consensus 83 ~C~N~C~YCGf~~~N~i~R~~L--s~eEI~~E~~ai~~~-G---~k~ILLvtGE~~~~~~~~Yi~~~v~~ik~~f~---- 152 (371) T PRK09240 83 LCANDCTYCGFSMSNKIKRKTL--DEEEIEREMAAIKKL-G---FEHILLVTGEHEAKVGVDYIRRALPLAREYFS---- 152 (371) T ss_pred CCCCCCEECCCCCCCCCCCCCC--CHHHHHHHHHHHHHC-C---CCEEEEECCCCCCCCCHHHHHHHHHHHHHHCC---- T ss_conf 2177887589867787630028--999999999999976-9---52388540578776988999999999997567---- Q ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHC---CCCCHHHHHHHHHHHCC-CCCCCCCCCCCCCC Q ss_conf 321133210410023477663034541143234332013455422---44313478999986302-44433321000258 Q gi|254780628|r 106 VEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGR---NHNASEAIAAIHLARNI-FPRMSFDLIYALPK 181 (395) Q Consensus 106 ~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R---~~~~~~~~~~~~~~~~~-~~~v~iDli~GlPg 181 (395) T Consensus 153 -~v~iev~P--l~~eeY~~L~~aG~d~~~vyQETY~~~~Y~~lHp~G~K~dy~~RL~a~eRa~~aGi~~vgiGaLlGL~- 228 (371) T PRK09240 153 -SVAIEVQP--LSEEEYAELVELGLDGVTVYQETYNPATYAKHHLRGPKQDFFYRLETPERAARAGIRKIGLGALLGLS- 228 (371) T ss_pred -CEEEEECC--CCHHHHHHHHHCCCCEEEEEEHHCCHHHHHHHCCCCCCCCCHHHCCCHHHHHHCCCCEECEEEEECCC- T ss_conf -40799525--99899999998599869996032599999985889985452545237888987599703611022654- Q ss_pred CCCCCCCCCH Q ss_conf 5432211127 Q gi|254780628|r 182 QTMTQWEMEL 191 (395) Q Consensus 182 qt~e~~~~~l 191 (395) T Consensus 229 ----dwr~e~ 234 (371) T PRK09240 229 ----DWRTDA 234 (371) T ss_pred ----HHHHHH T ss_conf ----689999 |
|
>TIGR02351 thiH thiazole biosynthesis protein ThiH; InterPro: IPR012726 Members of this protein family are the ThiH proteins involved in thiamine biosynthesis | Back alignment and domain information |
---|
Probab=98.28 E-value=2.9e-06 Score=61.66 Aligned_cols=173 Identities=14% Similarity=0.342 Sum_probs=117.4 Q ss_pred HHHHHHHHHCCCCCCCEE--EEEECCC-----CCCCCCCCCCEEE--ECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEE Q ss_conf 137899884288988549--9994065-----1183765773024--578866288999999999999987618950589 Q gi|254780628|r 3 YLSAYENNMTGQGSNSLG--VYVHWPF-----CVKKCPYCDFNSH--VRRYKVGQENFIQSFLTEMQWMRQLTGPRSISS 73 (395) Q Consensus 3 ~~~~~~~~~~~~~~~~l~--lYihiPF-----C~~~C~yC~f~~~--~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~ 73 (395) T Consensus 53 YLE~mA~~a~~lt~~rFG~ti~Lf~PLYlSN~C~N~C~YCGF~~~NKIkR~~Ln~----~Ei~~E~~aI~k~g---Pf~~ 125 (378) T TIGR02351 53 YLEEMAQKAKKLTRKRFGNTISLFTPLYLSNYCSNKCVYCGFSMSNKIKRKKLNE----EEIEREIEAIKKSG---PFKE 125 (378) T ss_pred HHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCH----HHHHHHHHHHHHCC---CCHH T ss_conf 8999999999873876378100013345654148752104657867302004888----89999999986207---7013 Q ss_pred E-EECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCC- Q ss_conf 9-96288888789999999997664047644433211332104100234776630345411432343320134554224- Q gi|254780628|r 74 I-FFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRN- 151 (395) Q Consensus 74 i-y~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~- 151 (395) T Consensus 126 iLlvtGE~e~~~g~~Yi~~~~~l~k~~F~~-----l~iEv~P--l~~eeYk~L~~~Gld~V~VyQETYn~~~Y~~~H~~G 198 (378) T TIGR02351 126 ILLVTGESEKAAGVEYIEEAIKLAKEYFSS-----LAIEVQP--LTEEEYKKLKEAGLDGVTVYQETYNEKKYKKHHLAG 198 (378) T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHHCCC-----CEEEEEE--CCHHHHHHHHHCCCCEEEEEEECCCHHHCCCCCCCC T ss_conf 001115777558837899999998752785-----4488730--770456889770888158876516742154437666 Q ss_pred --CCCHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCCC-CCCCHHHH Q ss_conf --4313478999986302-4443332100025854322-11127887 Q gi|254780628|r 152 --HNASEAIAAIHLARNI-FPRMSFDLIYALPKQTMTQ-WEMELQRA 194 (395) Q Consensus 152 --~~~~~~~~~~~~~~~~-~~~v~iDli~GlPgqt~e~-~~~~l~~~ 194 (395) T Consensus 199 ~K~~F~yRl~tpeR~a~AG~~kIg~GaLlGL-----~dnwR~Da~~~ 240 (378) T TIGR02351 199 KKKDFRYRLETPERIAKAGMRKIGIGALLGL-----EDNWRTDAFFT 240 (378) T ss_pred CCCCCCCCCCCHHHHHHCCCCEEHHHHHHHC-----CCCHHHHHHHH T ss_conf 8776441056046786618740212534301-----22422899999 |
They are homologues of the BioB protein of biotin biosynthesis. Genes encoding these proteins are generally found in operons with other thiamin biosynthesis genes. ; GO: 0005506 iron ion binding, 0051539 4 iron 4 sulfur cluster binding, 0009228 thiamin biosynthetic process. |
>PRK08444 hypothetical protein; Provisional | Back alignment and domain information |
---|
Probab=99.08 E-value=4.1e-09 Score=80.53 Aligned_cols=216 Identities=10% Similarity=0.159 Sum_probs=139.7 Q ss_pred CEEEEEECCC---CCCCCCCCCCEEEECCCCCCHHHHH---HHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHH Q ss_conf 5499994065---1183765773024578866288999---999999999987618950589996288888789999999 Q gi|254780628|r 18 SLGVYVHWPF---CVKKCPYCDFNSHVRRYKVGQENFI---QSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIAL 91 (395) Q Consensus 18 ~l~lYihiPF---C~~~C~yC~f~~~~~~~~~~~~~y~---~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ 91 (395) T Consensus 46 tfv~n~~IN~TNiC~~~C~FCaF~r~~~~~----~aY~ls~eei~~~~~ea~~-~G~tev--~i~GG~~P~-~~~eyY~~ 117 (353) T PRK08444 46 YFNINRHINPTNICADVCKFCAFSAHRKNP----NPYTMSHEEILEIVKESVK-RGIKEV--HIVSAHNPN-YGYQWYLE 117 (353) T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCC----CCEECCHHHHHHHHHHHHH-CCCCEE--EEECCCCCC-CCHHHHHH T ss_conf 998205745664456888567561689999----8766699999999999997-598789--981475989-97588999 Q ss_pred HHHHHHHCCCCCCCCCCC-CC----CCCCCC-HHHHHHHHHHCCCCCEE-EECCCCCCHHHHHHHCCC-CCHHHHHHHHH Q ss_conf 997664047644433211-33----210410-02347766303454114-323433201345542244-31347899998 Q gi|254780628|r 92 ILDGIAKNWTVSSNVEIT-IE----ANPSSV-EVNNFQGYRKAGVNRIS-LGVQSLEEQSLRFLGRNH-NASEAIAAIHL 163 (395) Q Consensus 92 ll~~i~~~~~~~~~~e~t-~E----~~P~~~-~~~~l~~l~~~Gv~RiS-~GvQs~~~~~l~~~~R~~-~~~~~~~~~~~ 163 (395) T Consensus 118 l~r~ik~~~P~i~i~aft~~EI~~~a~~~~~s~~evL~~Lk~AGL~slpGggAEIl~d~VR~~I~p~K~~~~~Wl~i~~~ 197 (353) T PRK08444 118 IFKMIKEAYPNLHVKAMTAAEVDFLSRKFGKSYEEVLEDMLEYGVDSMPGGGAEIFDEEVRKKICKGKVSSERWLEIHKY 197 (353) T ss_pred HHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCHHCCHHHHHHHCCCCCCHHHHHHHHHH T ss_conf 99999985885047717789999999980999999999999819875789872003777897618998999999999999 Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCC--EEE-EEEEEE-CCCEEHHHHHCCCCCCCHHHHHHHHHHHH Q ss_conf 63024443332100025854322111278875318001--234-646882-59600014544980211035678899986 Q gi|254780628|r 164 ARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYAVDH--LSL-YQLTIE-KGTLFYKMHKDGDLVLPSENVAVDLYNLT 239 (395) Q Consensus 164 ~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~--is~-Y~l~i~-~~t~l~~~~~~~~~~~p~~~~~~~~~~~a 239 (395) T Consensus 198 AH~lGi~ttaTmmyGh-vEt~e~rv~HL~~lR~lQd~tgGF~~FIPl~f~~~~t~l~~~------~~~t~~e~Lr~~Ais 270 (353) T PRK08444 198 WHKKGKQSNATMLFGH-IENREHRIDHMLRLRDLQDKTGGFNAFIPLVYQRENNYLKVE------KFPSSQEILKTIAIS 270 (353) T ss_pred HHHCCCCCCEEEECCC-CCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCC------CCCCHHHHHHHHHHH T ss_conf 9982996641467788-799999999999999836557983589765657899857778------999989999999999 Q ss_pred HHHHHHCCCCC Q ss_conf 55788709624 Q gi|254780628|r 240 QSITSAHGLHA 250 (395) Q Consensus 240 ~e~L~~~GY~~ 250 (395) T Consensus 271 Rl~L-d-ni~~ 279 (353) T PRK08444 271 RILL-D-NIPH 279 (353) T ss_pred HHHH-C-CCCC T ss_conf 9986-3-8786 |
|
>PRK08445 hypothetical protein; Provisional | Back alignment and domain information |
---|
Probab=99.07 E-value=3.9e-09 Score=80.62 Aligned_cols=220 Identities=13% Similarity=0.214 Sum_probs=140.0 Q ss_pred CEEEEEECCC---CCCCCCCCCCEEEECCCCCCHHHHH---HHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHH Q ss_conf 5499994065---1183765773024578866288999---999999999987618950589996288888789999999 Q gi|254780628|r 18 SLGVYVHWPF---CVKKCPYCDFNSHVRRYKVGQENFI---QSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIAL 91 (395) Q Consensus 18 ~l~lYihiPF---C~~~C~yC~f~~~~~~~~~~~~~y~---~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ 91 (395) T Consensus 39 tfv~nrniN~TNiC~~~C~FCaF~r~~~~~----~aY~ls~eei~~~~~~a~----~~g~tEv~i~GG~~P~l~~~yY~~ 110 (348) T PRK08445 39 TFIVDRNINYTNICWVDCKFCAFYRHLKEE----DAYILSFEEIDQKIEELL----AIGGTQILFQGGVHPKLKIEWYEN 110 (348) T ss_pred EEEECCCCCHHHHHHCCCCCCCCCCCCCCC----CCCCCCHHHHHHHHHHHH----HCCCEEEEEECCCCCCCCHHHHHH T ss_conf 997016875526865489777574799998----762279999999999998----649818998279899997779999 Q ss_pred HHHHHHHCCCCCCC-----CCCCCCCCCCCC-HHHHHHHHHHCCCCCE-EEECCCCCCHHHHHHHC-CCCCHHHHHHHHH Q ss_conf 99766404764443-----321133210410-0234776630345411-43234332013455422-4431347899998 Q gi|254780628|r 92 ILDGIAKNWTVSSN-----VEITIEANPSSV-EVNNFQGYRKAGVNRI-SLGVQSLEEQSLRFLGR-NHNASEAIAAIHL 163 (395) Q Consensus 92 ll~~i~~~~~~~~~-----~e~t~E~~P~~~-~~~~l~~l~~~Gv~Ri-S~GvQs~~~~~l~~~~R-~~~~~~~~~~~~~ 163 (395) T Consensus 111 l~r~ik~~~P~i~ihaft~~EI~~~a~~~~~s~~EvL~~Lk~AGL~slPGggAEIl~d~VR~~I~p~K~s~~~Wlei~~~ 190 (348) T PRK08445 111 LVSHIAQKYPTITIHGFSAVEIDYIAKISKISLKEVLERLQAKGLSSIPGAGAEILSDRVRDIIAPKKLSSDRWLEVHRQ 190 (348) T ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHCCHHHHHHHCCCCCCHHHHHHHHHH T ss_conf 99999975775424279999999999981989999999999819887888662634889998748888999999999999 Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC--CCEE-EEEEEEE-CCCEEHHHHHCCCCCCCHHHHHHHHHHHH Q ss_conf 630244433321000258543221112788753180--0123-4646882-59600014544980211035678899986 Q gi|254780628|r 164 ARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYAV--DHLS-LYQLTIE-KGTLFYKMHKDGDLVLPSENVAVDLYNLT 239 (395) Q Consensus 164 ~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p--~~is-~Y~l~i~-~~t~l~~~~~~~~~~~p~~~~~~~~~~~a 239 (395) T Consensus 191 AH~lGi~ttaTMlyGh-iEt~e~rv~HL~~lR~lQdeTgGF~~FIpl~F~p~nt~l~~~~~~~--~~~~~~e~Lk~~Avs 267 (348) T PRK08445 191 AHKIGMKSTATMMFGT-VENDEEIIEHWEHIRDLQDETGGFRAFILWSFQPDNTPLKEEHPEI--KKQSSNRYLRLLAVS 267 (348) T ss_pred HHHCCCCCCCEEECCC-CCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHCCCCCC--CCCCHHHHHHHHHHH T ss_conf 9986996412136267-7999999999999999998619978998543106997020037877--899879999999999 Q ss_pred HHHHHHCCCCC Q ss_conf 55788709624 Q gi|254780628|r 240 QSITSAHGLHA 250 (395) Q Consensus 240 ~e~L~~~GY~~ 250 (395) T Consensus 268 RL~L-d-ni~~ 276 (348) T PRK08445 268 RLFL-D-NFKN 276 (348) T ss_pred HHHH-C-CCCC T ss_conf 9986-4-8876 |
|
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH | Back alignment and domain information |
---|
Probab=98.70 E-value=9.6e-07 Score=64.83 Aligned_cols=215 Identities=14% Similarity=0.181 Sum_probs=136.3 Q ss_pred HHHHHCCCCCCCEEEEEECCC-CCCCCCCCCCEEEE---CCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCC Q ss_conf 998842889885499994065-11837657730245---78866288999999999999987618950589996288888 Q gi|254780628|r 7 YENNMTGQGSNSLGVYVHWPF-CVKKCPYCDFNSHV---RRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPS 82 (395) Q Consensus 7 ~~~~~~~~~~~~l~lYihiPF-C~~~C~yC~f~~~~---~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs 82 (395) T Consensus 16 ~~~~~~g~kr~Plvl~le~t~rCNL~C~~C~~i~~~~~~l~~~Ls~ee~~~~~-------~e~--Gap~--V~itGGEPL 84 (318) T TIGR03470 16 IKQKLNGRKRFPLVLMLEPLFRCNLACAGCGKIQYPAEILKQRLSVEECLRAV-------DEC--GAPV--VSIPGGEPL 84 (318) T ss_pred HHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHH-------HHC--CCCE--EEECCCCCC T ss_conf 98773376466758873121322677889974136764654438999999999-------984--9978--995188745 Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHH Q ss_conf 78999999999766404764443321133210410023477663034541143234332013455422443134789999 Q gi|254780628|r 83 LIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIH 162 (395) Q Consensus 83 ~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~ 162 (395) T Consensus 85 L-r-~dl~eIv~~a~~~g~-----~v~l~TNG-~Ll~k~i~~~~~~~~~~~~VsLDG~~e~HD~~r~~~G~Fd~av~aIr 156 (318) T TIGR03470 85 L-H-PEIDEIVRGLVARKK-----FVYLCTNA-LLLEKKLDKFEPSPYLTFSVHLDGLREHHDASVCREGVFDRAVEAIR 156 (318) T ss_pred C-C-CCHHHHHHHHHHCCC-----EEEEECCH-HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCHHHHHHHHHH T ss_conf 5-6-479999999997599-----79997755-20099999985188836999801787886688717977999999999 Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 86302444333210002585432211127887531800123464688259600014544980211035678899986557 Q gi|254780628|r 163 LARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSI 242 (395) Q Consensus 163 ~~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~ 242 (395) T Consensus 157 ~ak~~G~~V~iN~Tv-f~~~n~~~i~~~~d~~~~lgVdgi~i-----sp~y~Ye~ap~q-~-~fl~r~~~~~lfr~il~~ 228 (318) T TIGR03470 157 EAKARGFRVTTNTTL-FNDTDPEEVAEFFDYLTDLGVDGMTI-----SPGYAYEKAPDQ-D-HFLGRRQTKKLFREVLSN 228 (318) T ss_pred HHHHCCCCEEEEEEE-ECCCCHHHHHHHHHHHHHCCCCEEEE-----CCCCCCCCCCCC-C-CCCCHHHHHHHHHHHHHH T ss_conf 999869946799897-06899999999999998769973897-----665310237631-1-115899999999999986 Q ss_pred HHHCCC Q ss_conf 887096 Q gi|254780628|r 243 TSAHGL 248 (395) Q Consensus 243 L~~~GY 248 (395) T Consensus 229 ~~~k~w 234 (318) T TIGR03470 229 GNGKRW 234 (318) T ss_pred CCCCCC T ss_conf 456584 |
The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH |
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only] | Back alignment and domain information |
---|
Probab=98.70 E-value=1.1e-06 Score=64.54 Aligned_cols=208 Identities=9% Similarity=0.061 Sum_probs=132.8 Q ss_pred CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 11837657730245788662889999999999999876189505899962888887899999999976640476444332 Q gi|254780628|r 28 CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVE 107 (395) Q Consensus 28 C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e 107 (395) T Consensus 18 CNL~C~YC~~~~~~~~~~-~Ms--~etle~~i~~~~~~~~~~~v~-~~w~GGEPlL~~~~f~~~~~~-l~~k~~~~~~i~ 92 (378) T COG0641 18 CNLDCKYCFYLEKESLQR-IMS--DETLEEYVRQYIAASNGDKVT-FTWQGGEPLLAGLDFYRKAVA-LQQKYANGKTIS 92 (378) T ss_pred CCCCCCEECCCCCCCCCC-CCC--HHHHHHHHHHHHHCCCCCEEE-EEEECCCCCCCHHHHHHHHHH-HHHHHCCCCCEE T ss_conf 699888507617777778-789--999999999999608987479-999788640340879999999-999860588257 Q ss_pred CCCCCCCCCCHHHHHHHHHHCCCC-CEEE-ECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC Q ss_conf 113321041002347766303454-1143-23433201345542244313478999986302444333210002585432 Q gi|254780628|r 108 ITIEANPSSVEVNNFQGYRKAGVN-RISL-GVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMT 185 (395) Q Consensus 108 ~t~E~~P~~~~~~~l~~l~~~Gv~-RiS~-GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e 185 (395) T Consensus 93 ~siqTNg~LL~~e~~e~l~~~~~~IgISiDGp~eihD~~R~~~~GkgTfd~i~~~i~~L~~~~v~~~--~~~vv~~~n~~ 170 (378) T COG0641 93 NALQTNGTLLNDEWAEFLAEHDFLIGISIDGPEEIHDKYRVTKSGKGTFDRVMKGLELLQAHGVDFN--TLTVVNRQNVL 170 (378) T ss_pred EEEEECCCCCCHHHHHHHHHCCCEEEEECCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEE--EEEEECHHHHH T ss_conf 8998760325799999998529669996668177611103578998569999999999997588469--99997644530 Q ss_pred CCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC Q ss_conf 21112788753180012346468825960001454498021103567889998655788709 Q gi|254780628|r 186 QWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHG 247 (395) Q Consensus 186 ~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~G 247 (395) T Consensus 171 ~~~ei~~~l~~~g~~~i~fip~~~~~~~~~----~~~~~~~~~-~~~~~fl~~~~~~~~~~~ 227 (378) T COG0641 171 HPEEIYHFLKSEGSKFIQFIPLVESDNRGD----SLLEFSVTA-EEYGQFLIAIFDEWVRHD 227 (378) T ss_pred CHHHHHHHHHHCCCCEEEEEECCCCCCCCC----CCCCCCCCH-HHHHHHHHHHHHHHHHHC T ss_conf 799999999973766389885116888775----322123466-679999999999999714 |
|
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
---|
Probab=98.66 E-value=1.9e-07 Score=69.41 Aligned_cols=202 Identities=14% Similarity=0.266 Sum_probs=137.2 Q ss_pred CCCCCCCCCCEEEECCCCCCHHHHH---HHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCC Q ss_conf 1183765773024578866288999---9999999999876189505899962888887899999999976640476444 Q gi|254780628|r 28 CVKKCPYCDFNSHVRRYKVGQENFI---QSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSS 104 (395) Q Consensus 28 C~~~C~yC~f~~~~~~~~~~~~~y~---~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~ 104 (395) T Consensus 117 CnlnCIfCSVdeGp~SrtR~~-dy~Vd~eyLl~w~~kVa~~-KgkglEaHlDGqGEP~lYP--~l~~lVqalk~~~~--- 189 (414) T COG2100 117 CNLNCIFCSVDEGPYSRTRKL-DYVVDPEYLLEWFEKVARF-KGKGLEAHLDGQGEPLLYP--HLVDLVQALKEHKG--- 189 (414) T ss_pred CCCEEEEEECCCCCCCCEECC-CEEECHHHHHHHHHHHHHH-HCCCEEEEECCCCCCCCCH--HHHHHHHHHHCCCC--- T ss_conf 432058985257864330025-6175689999999999964-0787278753788875453--39999999743898--- Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHH-C-CCCCHHHHHHHHHHHCCCCCCCCCCCC---CC Q ss_conf 332113321041002347766303454114323433201345542-2-443134789999863024443332100---02 Q gi|254780628|r 105 NVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLG-R-NHNASEAIAAIHLARNIFPRMSFDLIY---AL 179 (395) Q Consensus 105 ~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~-R-~~~~~~~~~~~~~~~~~~~~v~iDli~---Gl 179 (395) T Consensus 190 v~vVSmQTng~~L~~~lv~eLeeAGLdRiNlSv~aLDpk~Ak~L~G~~dYdv~kvle~aE~i~~a~----idvlIaPv~l 265 (414) T COG2100 190 VEVVSMQTNGVLLSKKLVDELEEAGLDRINLSVDALDPKLAKMLAGRKDYDVKKVLEVAEYIANAG----IDVLIAPVWL 265 (414) T ss_pred CEEEEEEECCEECCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCC----CCEEEEEEEC T ss_conf 428998507644459999999970875588620237988987742840117899999999998679----8889831442 Q ss_pred CCCCCCCCCCCHHHHHHCCCC------CEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 585432211127887531800------12346468825960001454498021103567889998655788709624 Q gi|254780628|r 180 PKQTMTQWEMELQRALSYAVD------HLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHA 250 (395) Q Consensus 180 Pgqt~e~~~~~l~~~~~l~p~------~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~ 250 (395) T Consensus 266 PG~ND~E~~~iIe~A~~iGaGkk~p~lgiQky--ipy---k~GRkp~~-~k~~~----fkeFYrwLrelEketg~kp 332 (414) T COG2100 266 PGVNDDEMPKIIEWAREIGAGKKWPPLGIQKY--IPY---KFGRKPVI-AKVWP----FKEFYRWLRELEKETGVKP 332 (414) T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEE--EEE---CCCCCCCC-CCCCC----HHHHHHHHHHHHHHHCCCC T ss_conf 78681778999999998488877998530775--540---20688630-35575----9999999999999739885 |
|
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional | Back alignment and domain information |
---|
Probab=98.62 E-value=5.1e-07 Score=66.66 Aligned_cols=216 Identities=11% Similarity=0.136 Sum_probs=129.4 Q ss_pred CEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHH Q ss_conf 54999940651183765773024578866288999999999999987618950589996288888789999999997664 Q gi|254780628|r 18 SLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIA 97 (395) Q Consensus 18 ~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~ 97 (395) T Consensus 20 GiRt~vFl~GC~lrC~~ChN-pet~~~~~g~~~t~~el~~~i~~~~~f~~~s-gGGVT~SGGEPllq-~ef~~~l~~~~k 96 (246) T PRK11145 20 GIRFITFMQGCLMRCLYCHN-RDTWDTHGGKEVTVEELMKEVVTYRHFMNAS-GGGVTASGGEAILQ-AEFVRDWFRACK 96 (246) T ss_pred CEEEEEEECCCCCCCCCCCC-HHHHCCCCCEECCHHHHHHHHHHHHHHHHHC-CCEEEEECCCEECC-HHHHHHHHHHHH T ss_conf 83899980687788998979-6784867998755999999999879998605-96389869951268-999999999998 Q ss_pred HCCCCCCCCCCCCCCCCCCCH--HHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCC--CCC Q ss_conf 047644433211332104100--2347766303454114323433201345542244313478999986302444--333 Q gi|254780628|r 98 KNWTVSSNVEITIEANPSSVE--VNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPR--MSF 173 (395) Q Consensus 98 ~~~~~~~~~e~t~E~~P~~~~--~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~--v~i 173 (395) T Consensus 97 ~~-----gi~taidTn-G~~~~~~~~~~~ll~~-~D~vl~DiK~~d~~~h~~~t-G~~n~~iL~nl~~l~~~~~~~~iR~ 168 (246) T PRK11145 97 KE-----GIHTCLDTN-GFVRRYDPVIDELLDV-TDLVMLDLKQMNDEIHQNLV-GVSNHRTLEFARYLAKRNQKTWIRY 168 (246) T ss_pred HC-----CCCEEEECC-CCCCCCHHHHHHHHHH-CCEEEECCCCCCHHHHHHHH-CCCCHHHHHHHHHHHHCCCCEEEEE T ss_conf 87-----998999899-9987557999998863-23457646668989999998-8891899999999997899789988 Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHCC-CCCEEEEEEE---EECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 2100025854322111278875318-0012346468---82596000145449802110356788999865578870962 Q gi|254780628|r 174 DLIYALPKQTMTQWEMELQRALSYA-VDHLSLYQLT---IEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLH 249 (395) Q Consensus 174 Dli~GlPgqt~e~~~~~l~~~~~l~-p~~is~Y~l~---i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~ 249 (395) T Consensus 169 pvIPg~-nD~~e~i~~~a~fl~~l~~v~~v~lLPyH~~G~~Ky~~lg~~Y~~~~~~~~~~e~----l~~~~~i~~~~Gl~ 243 (246) T PRK11145 169 VVVPGW-TDDDDSAHRLGEFIKDMGNIEKVELLPYHELGKHKWEAMGEEYKLDGVKPPSKET----MERIKGILEQYGHN 243 (246) T ss_pred EEECCC-CCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHCCCCCCCCCCCCCCHHH----HHHHHHHHHHCCCE T ss_conf 677998-8999999999999997699763665788756654799839998888989979999----99999999983998 |
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>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E; InterPro: IPR011843 This entry describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ) | Back alignment and domain information |
---|
Probab=98.55 E-value=2.1e-06 Score=62.63 Aligned_cols=197 Identities=16% Similarity=0.298 Sum_probs=130.7 Q ss_pred CCCCCCCCCCEEEEC--CCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCC Q ss_conf 118376577302457--886628899999999999998761895058999628888878999999999766404764443 Q gi|254780628|r 28 CVKKCPYCDFNSHVR--RYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSN 105 (395) Q Consensus 28 C~~~C~yC~f~~~~~--~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~ 105 (395) T Consensus 17 CPL~CPYCSNPLel~R~~~EL~T~~W~~Vl-~qAa----~lG---vlqlHfSGGEP~a--R~DL~eLv~~A~~LGlYtNL 86 (363) T TIGR02109 17 CPLQCPYCSNPLELARRKAELTTEEWTDVL-TQAA----ELG---VLQLHFSGGEPLA--RPDLVELVAHARRLGLYTNL 86 (363) T ss_pred CCCCCCCCCCCHHHHHHHCCCCHHHHHHHH-HHHH----HCC---CEEEECCCCCCCC--CCCHHHHHHHHHHCCCCHHH T ss_conf 888777989706888511468888999999-9998----539---0675130776663--35779999999775870146 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHH-CCCCCHHHHHHHHHHHCCC--CCCCCCCCCCCCCC Q ss_conf 32113321041002347766303454114323433201345542-2443134789999863024--44333210002585 Q gi|254780628|r 106 VEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLG-RNHNASEAIAAIHLARNIF--PRMSFDLIYALPKQ 182 (395) Q Consensus 106 ~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~-R~~~~~~~~~~~~~~~~~~--~~v~iDli~GlPgq 182 (395) T Consensus 87 --IT---SGvGLt~~rl~~L~~aGLDHvQlSfQ~vd~~~a~~iaG~k~A~~~Kl~~A~~v~~~g~PltLN~----V~HR~ 157 (363) T TIGR02109 87 --IT---SGVGLTEARLDALADAGLDHVQLSFQGVDEALADRIAGLKNAFEQKLAVARAVKAAGLPLTLNF----VLHRH 157 (363) T ss_pred --HH---HHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEH----CCCCC T ss_conf --77---6345679999999757985788764147878886412502589999999999996189817602----00242 Q ss_pred CCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHH-CCCCCCCHHHHHH---HHHHHHHHHHHHCCCC Q ss_conf 43221112788753180012346468825960001454-4980211035678---8999865578870962 Q gi|254780628|r 183 TMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHK-DGDLVLPSENVAV---DLYNLTQSITSAHGLH 249 (395) Q Consensus 183 t~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~-~~~~~~p~~~~~~---~~~~~a~e~L~~~GY~ 249 (395) T Consensus 158 Ni~~i~~~i~La~~L~AdrvE~A~------~QyYGWA~~NR~aLlPt~~Ql~~a~r~V~~aRer~~g~~~~ 222 (363) T TIGR02109 158 NIDQIPEIIELAIELGADRVELAT------TQYYGWALLNRAALLPTREQLEEATRIVEEARERLKGQGNP 222 (363) T ss_pred HHHHHHHHHHHHHHCCCCEEEEEE------ECCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 021367899999863898488874------02022567745424898899999999999999998607998 |
PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.; GO: 0051539 4 iron 4 sulfur cluster binding, 0018189 pyrroloquinoline quinone biosynthetic process. |
>PRK09234 fbiC FO synthase; Reviewed | Back alignment and domain information |
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Probab=98.46 E-value=2.2e-06 Score=62.43 Aligned_cols=230 Identities=16% Similarity=0.232 Sum_probs=144.2 Q ss_pred EEEECCC---CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHH-HHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHH Q ss_conf 9994065---118376577302457886628899999999999-998761895058999628888878999999999766 Q gi|254780628|r 21 VYVHWPF---CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQ-WMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGI 96 (395) Q Consensus 21 lYihiPF---C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~-~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i 96 (395) T Consensus 530 vNRNINyTNVC~~~C~FCAF~r~~~~----~~aY~ls~-eeI~~r~~EA-~~~GaTEV~iqGGihP~l~~~~Y~di~r~i 603 (846) T PRK09234 530 VNRNINFTNICYTGCRFCAFAQRKGD----ADAYSLSL-DEVADRAWEA-WVAGATEVCMQGGIDPELPGTGYADLVRAV 603 (846) T ss_pred EECCCCHHHHHHCCCCCCCCCCCCCC----CCCEECCH-HHHHHHHHHH-HHCCCEEEEECCCCCCCCCHHHHHHHHHHH T ss_conf 40676388775517973514478899----87611899-9999999999-976987998347879899878999999999 Q ss_pred HHCCCCCC-----CCCCCCCCCCCCC-HHHHHHHHHHCCCCCEE-EECCCCCCHHHHHHHC-CCCCHHHHHHHHHHHCCC Q ss_conf 40476444-----3321133210410-02347766303454114-3234332013455422-443134789999863024 Q gi|254780628|r 97 AKNWTVSS-----NVEITIEANPSSV-EVNNFQGYRKAGVNRIS-LGVQSLEEQSLRFLGR-NHNASEAIAAIHLARNIF 168 (395) Q Consensus 97 ~~~~~~~~-----~~e~t~E~~P~~~-~~~~l~~l~~~Gv~RiS-~GvQs~~~~~l~~~~R-~~~~~~~~~~~~~~~~~~ 168 (395) T Consensus 604 K~~~P~ihihAFSp~EI~~~A~~~g~s~~E~L~~LkeAGL~SlPGggAEIL~d~VR~~Icp~K~~~~~Wlev~~~AH~lG 683 (846) T PRK09234 604 KARVPSMHVHAFSPMEIANGATRSGLSIREWLTALREAGLDTIPGTAAEILDDEVRWVLTKGKLPTAEWIEVVTTAHEVG 683 (846) T ss_pred HHHCCCCEEECCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHCC T ss_conf 98689870450899999999998299999999999980977799974132587999976888888999999999999859 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC--CE-EEEEEE-EECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 44333210002585432211127887531800--12-346468-825960001454498021103567889998655788 Q gi|254780628|r 169 PRMSFDLIYALPKQTMTQWEMELQRALSYAVD--HL-SLYQLT-IEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITS 244 (395) Q Consensus 169 ~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~--~i-s~Y~l~-i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~ 244 (395) T Consensus 684 l~TtATMmyGHv-Et~e~rv~HL~~lR~lQdeTGGFteFIPL~F~~~~tpl~~~g~~r--~gpT~~e~l~~~AvsRL~L~ 760 (846) T PRK09234 684 LRSSSTMMYGHV-DTPRHWVAHLRVLRDIQDRTGGFTEFVPLPFVHQSAPLYLAGAAR--PGPTHRDNRAVHALARILLH 760 (846) T ss_pred CCCCCEEECCCC-CCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHCCCCC--CCCCHHHHHHHHHHHHHHHH T ss_conf 975212435677-999999999999999998759955997467567888033226887--89988999999999999722 Q ss_pred HCCCCCCCCCCHHHHHH Q ss_conf 70962423674343101 Q gi|254780628|r 245 AHGLHAYEISNHSFLGA 261 (395) Q Consensus 245 ~~GY~~Yeis~fak~~~ 261 (395) T Consensus 761 dn-I~nI-QasWVklG~ 775 (846) T PRK09234 761 GR-IDNI-QTSWVKLGV 775 (846) T ss_pred CC-CCCE-ECCCHHCCH T ss_conf 68-8672-615001679 |
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>TIGR00423 TIGR00423 conserved hypothetical protein TIGR00423; InterPro: IPR005244 This entry describes a family of conserved hypothetical proteins with no known function | Back alignment and domain information |
---|
Probab=98.28 E-value=1.9e-06 Score=62.87 Aligned_cols=221 Identities=16% Similarity=0.283 Sum_probs=136.6 Q ss_pred CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHH-HHHHHCCCEEEEEEE-CCCCCCCCCH-----HHHHHHHHHHHHCC Q ss_conf 1183765773024578866288999999999999-987618950589996-2888887899-----99999997664047 Q gi|254780628|r 28 CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQW-MRQLTGPRSISSIFF-GGGTPSLIEP-----QNIALILDGIAKNW 100 (395) Q Consensus 28 C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~-~~~~~~~~~~~~iy~-GGGTPs~l~~-----~~l~~ll~~i~~~~ 100 (395) T Consensus 15 C~~~C~FCAF~~~~----k~~~~Y~Ls~-eEI~~Kv~ea~~~-G~tE~~iQGGlnP~~-~~nGssl~yy~~l~~~Ik~~~ 87 (331) T TIGR00423 15 CVGKCKFCAFRRRE----KDKDAYVLSL-EEILRKVKEAVAK-GATEICIQGGLNPQL-DINGSSLEYYEELFRAIKQEF 87 (331) T ss_pred HHHCCCCCCCCCCC----CCCCCCCCCH-HHHHHHHHHHHHC-CCEEEEEECCCCCCC-CCCCCHHHHHHHHHHHHHHCC T ss_conf 23247963311346----8988814077-9999999999971-982788523427887-645414999999999997417 Q ss_pred C---CC-----CCCCCCCCCCCC--CCHHHHHHHHHHCCCCCEEE---ECCCCCCHHHHHH-HCCCCCHHHHHHHHHHHC Q ss_conf 6---44-----433211332104--10023477663034541143---2343320134554-224431347899998630 Q gi|254780628|r 101 T---VS-----SNVEITIEANPS--SVEVNNFQGYRKAGVNRISL---GVQSLEEQSLRFL-GRNHNASEAIAAIHLARN 166 (395) Q Consensus 101 ~---~~-----~~~e~t~E~~P~--~~~~~~l~~l~~~Gv~RiS~---GvQs~~~~~l~~~-~R~~~~~~~~~~~~~~~~ 166 (395) T Consensus 88 pPyG~~hiHafSp~Ev~f~A~~~~~~~e~EvL~~LK~aGL~--SmPGtgAEILdD~vRr~IcP~K~~s~eWlev~~~AH~ 165 (331) T TIGR00423 88 PPYGDVHIHAFSPMEVYFLAKNEGLSIEKEVLKRLKKAGLD--SMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHR 165 (331) T ss_pred CCCCCEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCC--CCCCCCEEECCHHHHHHHCCCCCCHHHHHHHHHHHHH T ss_conf 89652476146868999999861897889999998885035--6777622653033587547798872789999999986 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC-CCC-------CE-EEEEEE-EECCCEEHHHHHCCCCCCCHHHHHHHHH Q ss_conf 2444333210002585432211127887531-800-------12-346468-8259600014544980211035678899 Q gi|254780628|r 167 IFPRMSFDLIYALPKQTMTQWEMELQRALSY-AVD-------HL-SLYQLT-IEKGTLFYKMHKDGDLVLPSENVAVDLY 236 (395) Q Consensus 167 ~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l-~p~-------~i-s~Y~l~-i~~~t~l~~~~~~~~~~~p~~~~~~~~~ 236 (395) T Consensus 166 ~GiptTATMMfGHv-e~~~h~v~HL~rir~iQ~~~~~QekTGGFteFIPL~F~~~n~P~~~~~~~~~~--~s~~~~Lk~~ 242 (331) T TIGR00423 166 LGIPTTATMMFGHV-EEPEHRVEHLLRIRKIQSTSLVQEKTGGFTEFIPLPFQPENAPIYLEGEVRKG--ASGIDDLKVI 242 (331) T ss_pred CCCCCCCHHCCCCC-CCHHHHHHHHHHHHHHCCCCHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCC--CCHHHHHHHH T ss_conf 66962101123552-76788999999998751700233522773210146778887771114002378--8868999999 Q ss_pred HHHHHHHHHCCCCCCCCCCHHHHHH Q ss_conf 9865578870962423674343101 Q gi|254780628|r 237 NLTQSITSAHGLHAYEISNHSFLGA 261 (395) Q Consensus 237 ~~a~e~L~~~GY~~Yeis~fak~~~ 261 (395) T Consensus 243 AiSRI~L~gk~I~NI-qASWV~lG~ 266 (331) T TIGR00423 243 AISRILLNGKNIKNI-QASWVKLGL 266 (331) T ss_pred HHHHHHHCCCCCCCC-CHHHHHHHH T ss_conf 999988288412232-506888547 |
. |
>COG0320 LipA Lipoate synthase [Coenzyme metabolism] | Back alignment and domain information |
---|
Probab=98.21 E-value=6.9e-06 Score=59.16 Aligned_cols=211 Identities=16% Similarity=0.179 Sum_probs=127.2 Q ss_pred EEEEEECCCCCCCCCCCCCEEEECCCCCC--HHHHHHHHHHHHHHHHHHHCCCEEEEE-----EECCCCCCCCCHHHHHH Q ss_conf 49999406511837657730245788662--889999999999999876189505899-----96288888789999999 Q gi|254780628|r 19 LGVYVHWPFCVKKCPYCDFNSHVRRYKVG--QENFIQSFLTEMQWMRQLTGPRSISSI-----FFGGGTPSLIEPQNIAL 91 (395) Q Consensus 19 l~lYihiPFC~~~C~yC~f~~~~~~~~~~--~~~y~~~l~~Ei~~~~~~~~~~~~~~i-----y~GGGTPs~l~~~~l~~ 91 (395) T Consensus 71 ATFmImG~~CTR~C~FC~V~~g~P~~lD~~EP~rvAea-V~~mg-----LkyVViTsVdRDDL~DGG-------A~hfa~ 137 (306) T COG0320 71 ATFMILGDICTRRCRFCDVKTGRPNPLDPDEPERVAEA-VKDMG-----LKYVVITSVDRDDLPDGG-------AQHFAE 137 (306) T ss_pred EEEEECCCHHCCCCCCCCCCCCCCCCCCCCHHHHHHHH-HHHHC-----CCEEEEEEECCCCCCCCC-------HHHHHH T ss_conf 37764151322678853147899999997427899999-99838-----986999753156665645-------689999 Q ss_pred HHHHHHHCCCCCCCCCCCCCC-CCCCC-HHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCC Q ss_conf 997664047644433211332-10410-0234776630345411432343320134554224431347899998630244 Q gi|254780628|r 92 ILDGIAKNWTVSSNVEITIEA-NPSSV-EVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFP 169 (395) Q Consensus 92 ll~~i~~~~~~~~~~e~t~E~-~P~~~-~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~ 169 (395) T Consensus 138 ~i~~Ir~~~P-----~t~iEvL~PDF~G~~~al~~v~~~~pdV~nHNvETVp-rL~~~VRp~A~Y~~SL~~L~~~k~~~P 211 (306) T COG0320 138 CIRAIRELNP-----QTTIEVLTPDFRGNDDALEIVADAGPDVFNHNVETVP-RLYPRVRPGATYERSLSLLERAKELGP 211 (306) T ss_pred HHHHHHHHCC-----CCEEEEECCCCCCCHHHHHHHHHCCCCHHHCCCCCCH-HCCCCCCCCCCHHHHHHHHHHHHHHCC T ss_conf 9999996399-----9648983865467899999998369611004520000-114256898768889999999998589 Q ss_pred CCC--CCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC Q ss_conf 433--321000258543221112788753180012346468825960001454498021103567889998655788709 Q gi|254780628|r 170 RMS--FDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHG 247 (395) Q Consensus 170 ~v~--iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~G 247 (395) T Consensus 212 ~i~TKSgiMlGL-GEt~~Ev~e~m~DLr~~gvdilTiGQYlq-P-S~--~HlpV~ryv~Pe------eF~~~~~~a~~~G 280 (306) T COG0320 212 DIPTKSGLMVGL-GETDEEVIEVMDDLRSAGVDILTIGQYLQ-P-SR--KHLPVQRYVTPE------EFDELEEVAEEMG 280 (306) T ss_pred CCCCCCCEEEEC-CCCHHHHHHHHHHHHHCCCCEEEECCCCC-C-CC--CCCCCEECCCHH------HHHHHHHHHHHCC T ss_conf 863112135505-77689999999999985998997300147-7-62--458833211889------9999999999746 Q ss_pred CCCCCCCCHHHH Q ss_conf 624236743431 Q gi|254780628|r 248 LHAYEISNHSFL 259 (395) Q Consensus 248 Y~~Yeis~fak~ 259 (395) T Consensus 281 F~~v~sgPlvRS 292 (306) T COG0320 281 FLHVASGPLVRS 292 (306) T ss_pred CHHHCCCCCCCC T ss_conf 065405763002 |
|
>COG2516 Biotin synthase-related enzyme [General function prediction only] | Back alignment and domain information |
---|
Probab=98.20 E-value=2.8e-05 Score=55.14 Aligned_cols=213 Identities=16% Similarity=0.178 Sum_probs=128.5 Q ss_pred EEEEEECCCCCCCCCCCCCEEEECCC--CC------CHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHH Q ss_conf 49999406511837657730245788--66------28899999999999998761895058999628888878999999 Q gi|254780628|r 19 LGVYVHWPFCVKKCPYCDFNSHVRRY--KV------GQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIA 90 (395) Q Consensus 19 l~lYihiPFC~~~C~yC~f~~~~~~~--~~------~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~ 90 (395) T Consensus 32 ~l~t~~~~~c~~~ca~c~~ar~s~a~p~~~~lsRv~w~~v~l~~~~~~~~~~~g~~~rici~~i~~p~----~--~~d~~ 105 (339) T COG2516 32 YLMTTYPGGCIADCAYCPQARSSTANPPKKVLSRVEWPAVALEEVLKRLFYDLGNFKRICIQQIAYPR----A--LNDLK 105 (339) T ss_pred EEEEECCCCEEECHHHCHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCC----C--CCHHH T ss_conf 65662278566465547355523458875036632662000787776766654021444110002554----2--30166 Q ss_pred HHHHHHHHCCCCCCCCCCCCC--CCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHH----CCCCCHHHHHHHHHH Q ss_conf 999766404764443321133--21041002347766303454114323433201345542----244313478999986 Q gi|254780628|r 91 LILDGIAKNWTVSSNVEITIE--ANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLG----RNHNASEAIAAIHLA 164 (395) Q Consensus 91 ~ll~~i~~~~~~~~~~e~t~E--~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~----R~~~~~~~~~~~~~~ 164 (395) T Consensus 106 ~i~~~~~~~----~~~~itiseci~~~~~-~~~l~e~~klg~d~l~V~~daa~~~~~e~v~~~s~s~~S~e~~~~~l~~~ 180 (339) T COG2516 106 LILERLHIR----LGDPITISECITAVSL-KEELEEYRKLGADYLGVAEDAANEELFEKVRKTSGSPHSWERYWEFLEKV 180 (339) T ss_pred HHHHHHHHC----CCCCEEHHHHHHCCCC-HHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHH T ss_conf 643665102----4785012023302451-68789988542355357887507778999874158987188899999999 Q ss_pred HCCC--CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 3024--44333210002585432211127887531800123464688259600014544980211035678899986557 Q gi|254780628|r 165 RNIF--PRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSI 242 (395) Q Consensus 165 ~~~~--~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~ 242 (395) T Consensus 181 ~~~~~k~rv~ihliVg-lGesD~~~ve~~~~v~~~g~-~v~Lfaf~P~~gt~me~r------~~~pve~Yrk~q-~a~-y 250 (339) T COG2516 181 AEAFGKGRVGIHLIVG-LGESDKDIVETIKRVRKRGG-IVSLFAFTPLKGTQMENR------KPPPVERYRKIQ-VAR-Y 250 (339) T ss_pred HHHHCCCCCCEEEEEC-CCCCHHHHHHHHHHHHHCCC-EEEEEEECCCCCCCCCCC------CCCCHHHHHHHH-HHH-H T ss_conf 9985467745157960-48756899999999985586-489998646556644578------998689999999-999-9 Q ss_pred HHHCCCCCCC Q ss_conf 8870962423 Q gi|254780628|r 243 TSAHGLHAYE 252 (395) Q Consensus 243 L~~~GY~~Ye 252 (395) T Consensus 251 li~~G~v~~~ 260 (339) T COG2516 251 LIGNGEVDLE 260 (339) T ss_pred HHHCCCCCHH T ss_conf 9734865554 |
|
>PRK12928 lipoyl synthase; Provisional | Back alignment and domain information |
---|
Probab=98.20 E-value=5.6e-06 Score=59.75 Aligned_cols=212 Identities=13% Similarity=0.153 Sum_probs=123.5 Q ss_pred EEEEEECCCCCCCCCCCCCEEEECCCCCCHH-HHHHHHHHHHHHHHHHHCCCEEEEEE-----ECCCCCCCCCHHHHHHH Q ss_conf 4999940651183765773024578866288-99999999999998761895058999-----62888887899999999 Q gi|254780628|r 19 LGVYVHWPFCVKKCPYCDFNSHVRRYKVGQE-NFIQSFLTEMQWMRQLTGPRSISSIF-----FGGGTPSLIEPQNIALI 92 (395) Q Consensus 19 l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~-~y~~~l~~Ei~~~~~~~~~~~~~~iy-----~GGGTPs~l~~~~l~~l 92 (395) T Consensus 61 ATFMIlGd~CTR~C~FC~V~tg~P~~lD~~EP~rvA~av~~m~-----LkyvVITSV~RDDL~DgG-------A~hfa~~ 128 (290) T PRK12928 61 ATFLLMGSICTRRCAFCQVAKGRPMPLDPDEPERVAEAVAALG-----LRYVVLTSVARDDLPDGG-------AAHFVAT 128 (290) T ss_pred CEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC-----CCEEEEEEECCCCCCCCC-------HHHHHHH T ss_conf 2899667863548985155379989898034799999999838-----976898412367886645-------2999999 Q ss_pred HHHHHHCCCCCCCCCCCCCC-CCCCCH-HH-HHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCC Q ss_conf 97664047644433211332-104100-23-4776630345411432343320134554224431347899998630244 Q gi|254780628|r 93 LDGIAKNWTVSSNVEITIEA-NPSSVE-VN-NFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFP 169 (395) Q Consensus 93 l~~i~~~~~~~~~~e~t~E~-~P~~~~-~~-~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~ 169 (395) T Consensus 129 I~~Ir~~~P-----~~~iEvLiPDF~G~~~~al~~v~~a~pdV~nHNiETV~-rL~~~VRp~A~Y~rSL~vL~~ak~~~~ 202 (290) T PRK12928 129 IAAIRARNP-----GTGIEVLTPDFWGGVARALATVLAAKPDCFNHNLETVP-RLQKAVRRGADYQRSLDLLARAKELAP 202 (290) T ss_pred HHHHHHHCC-----CCEEEEECHHHCCCHHHHHHHHHHCCCHHHHCCCCCCH-HHCCCCCCCCHHHHHHHHHHHHHHHCC T ss_conf 999984599-----86799707111368789999998468546545501204-317124885508999999999997388 Q ss_pred CC--CCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC Q ss_conf 43--3321000258543221112788753180012346468825960001454498021103567889998655788709 Q gi|254780628|r 170 RM--SFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHG 247 (395) Q Consensus 170 ~v--~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~G 247 (395) T Consensus 203 ~i~TKSgiMvGL-GEt~eEv~~~~~DLr~~gvdilTiGQYL-~P-s~--~h~pV~ryv~P~------eF~~~~~~a~~~G 271 (290) T PRK12928 203 GIPTKSGLMLGL-GETEDEVIETLRDLRAVDCDRLTIGQYL-RP-SL--AHLPVQRYWTPE------EFEALGQIARELG 271 (290) T ss_pred CCEEEEEEEEEC-CCCHHHHHHHHHHHHHCCCCEEEECCCC-CC-CC--CCCCCEECCCHH------HHHHHHHHHHHCC T ss_conf 852413458860-5889999999999998199899824025-88-86--668833356989------9999999999769 Q ss_pred CCCCCCCCHHHH Q ss_conf 624236743431 Q gi|254780628|r 248 LHAYEISNHSFL 259 (395) Q Consensus 248 Y~~Yeis~fak~ 259 (395) T Consensus 272 F~~V~SgPlVRS 283 (290) T PRK12928 272 FKHVRSGPLVRS 283 (290) T ss_pred CCEEEECCCCCC T ss_conf 967983374003 |
|
>PRK05481 lipoyl synthase; Provisional | Back alignment and domain information |
---|
Probab=98.19 E-value=6.4e-06 Score=59.35 Aligned_cols=213 Identities=15% Similarity=0.154 Sum_probs=122.0 Q ss_pred EEEEEECCCCCCCCCCCCCEEEECCCCCCHHH-HHHHHHHHHHHHHHHHCCCEEEEEE-----ECCCCCCCCCHHHHHHH Q ss_conf 49999406511837657730245788662889-9999999999998761895058999-----62888887899999999 Q gi|254780628|r 19 LGVYVHWPFCVKKCPYCDFNSHVRRYKVGQEN-FIQSFLTEMQWMRQLTGPRSISSIF-----FGGGTPSLIEPQNIALI 92 (395) Q Consensus 19 l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~-y~~~l~~Ei~~~~~~~~~~~~~~iy-----~GGGTPs~l~~~~l~~l 92 (395) T Consensus 53 ATFMIlG~~CTR~C~FC~V~tG~P~~~D~~EP~~vA~av~~m~-----Lk~vViTSV~RDDL~DgG-------A~hfa~~ 120 (289) T PRK05481 53 ATFMILGDICTRRCPFCDVATGRPLPLDPDEPERVAEAVARMG-----LKYVVITSVDRDDLPDGG-------AQHFAET 120 (289) T ss_pred CEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC-----CCEEEEEEECCCCCCCCC-------HHHHHHH T ss_conf 0677657876578877407889989887030799999999828-----976999634166665655-------4999999 Q ss_pred HHHHHHCCCCCCCCCCCCCC-CCCCCH-HH-HHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCC Q ss_conf 97664047644433211332-104100-23-4776630345411432343320134554224431347899998630244 Q gi|254780628|r 93 LDGIAKNWTVSSNVEITIEA-NPSSVE-VN-NFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFP 169 (395) Q Consensus 93 l~~i~~~~~~~~~~e~t~E~-~P~~~~-~~-~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~ 169 (395) T Consensus 121 I~~Ir~~~P-----~~~iEvLiPDF~G~~~~~l~~v~~a~PdV~nHNiETV~-rL~~~VRp~a~Y~rSL~vL~~~k~~~p 194 (289) T PRK05481 121 IRAIRELSP-----GTTIEVLIPDFRGRKDAALEIVVAAPPDVFNHNLETVP-RLYKRVRPGADYERSLELLKRAKELDP 194 (289) T ss_pred HHHHHHHCC-----CCEEEECCCCCCCCHHHHHHHHHHCCHHHHHCCHHHHH-HHCCCCCCCCHHHHHHHHHHHHHHHCC T ss_conf 999985599-----97799707211469999999998567177643513104-436233882338999999999997489 Q ss_pred CCC--CCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC Q ss_conf 433--321000258543221112788753180012346468825960001454498021103567889998655788709 Q gi|254780628|r 170 RMS--FDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHG 247 (395) Q Consensus 170 ~v~--iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~G 247 (395) T Consensus 195 ~~~TKSgiMvGL-GEt~eEv~~~~~DL~~~gvdilTiGQYL-~P-s~--~hlpV~ryv~P~------eF~~~~~~a~~~G 263 (289) T PRK05481 195 GIPTKSGLMVGL-GETDEEVLEVMDDLRAHGVDILTIGQYL-QP-SR--KHLPVERYVTPE------EFDEYKEIALELG 263 (289) T ss_pred CCCEEEEEEEEC-CCCHHHHHHHHHHHHHCCCCEEEECCCC-CC-CC--CCCCCEECCCHH------HHHHHHHHHHHCC T ss_conf 982413567755-7889999999999998199899834035-88-86--668843356989------9999999999759 Q ss_pred CCCCCCCCHHHHH Q ss_conf 6242367434310 Q gi|254780628|r 248 LHAYEISNHSFLG 260 (395) Q Consensus 248 Y~~Yeis~fak~~ 260 (395) T Consensus 264 F~~V~SgPlVRSS 276 (289) T PRK05481 264 FLHVASGPLVRSS 276 (289) T ss_pred CCEEEECCCCCCC T ss_conf 9679823740020 |
|
>COG0731 Fe-S oxidoreductases [Energy production and conversion] | Back alignment and domain information |
---|
Probab=98.10 E-value=6.1e-05 Score=52.86 Aligned_cols=218 Identities=14% Similarity=0.225 Sum_probs=120.9 Q ss_pred CCCCEEEEEEC------CCCCCCCCCCCCEEEECCCCCCHHHH-HHHHHHHHHHHHHHHC--CCEEEEE-EECCCCCCCC Q ss_conf 98854999940------65118376577302457886628899-9999999999987618--9505899-9628888878 Q gi|254780628|r 15 GSNSLGVYVHW------PFCVKKCPYCDFNSHVRRYKVGQENF-IQSFLTEMQWMRQLTG--PRSISSI-FFGGGTPSLI 84 (395) Q Consensus 15 ~~~~l~lYihi------PFC~~~C~yC~f~~~~~~~~~~~~~y-~~~l~~Ei~~~~~~~~--~~~~~~i-y~GGGTPs~l 84 (395) T Consensus 15 ksrryG~slgi~~tP~~~~Cs~~CvyC~~G~~~~~~~~~~efi~~~~I~~~~~~~~~~~g~ea~~pd~vtis~~GEPTLy 94 (296) T COG0731 15 KSRRYGISLGIQMTPSKKWCSYNCVYCWRGRTKKGTPERPEFIVEESILEELKLLLGYKGDEATEPDHVTISLSGEPTLY 94 (296) T ss_pred CCCCCCCCCCCCCCCCHHHHCCCCEEEECCCCCCCCCCCCCEECHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCC T ss_conf 50111522477666606543577758966677777777872415899999999984225665678877999379883346 Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCH---HHHHHH Q ss_conf 99999999976640476444332113321041002347766303454114323433201345542244313---478999 Q gi|254780628|r 85 EPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNAS---EAIAAI 161 (395) Q Consensus 85 ~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~---~~~~~~ 161 (395) T Consensus 95 --~~L~elI~~~k~~g~~-~tflvT---N-gsl-pdv~~~L~--~~dql~~sLdA~~~~~~~~InRP~~~~~~e~ile~L 164 (296) T COG0731 95 --PNLGELIEEIKKRGKK-TTFLVT---N-GSL-PDVLEELK--LPDQLYVSLDAPDEKTFRRINRPHKKDSWEKILEGL 164 (296) T ss_pred --CCHHHHHHHHHHCCCC-EEEEEE---C-CCH-HHHHHHHC--CCCEEEEEECCCCHHHHHHHCCCCCCCHHHHHHHHH T ss_conf --4889999999860795-089993---8-976-99998740--588799981468888999834888745299999999 Q ss_pred HHHHCC--CCCC-CCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHH Q ss_conf 986302--4443-3321000258543221112788753180012346468825960001454498021103567889998 Q gi|254780628|r 162 HLARNI--FPRM-SFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNL 238 (395) Q Consensus 162 ~~~~~~--~~~v-~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~ 238 (395) T Consensus 165 ~~~~~~~~~~~vir~tlvkg~N-~~~e~~~~~a~ll~~~~Pd~velk~~~rpga---s~~~-l~~~~~p~---~e~~~~f 236 (296) T COG0731 165 EIFRSEYKGRTVIRTTLVKGIN-DDEEELEEYAELLERINPDFVELKTYMRPGA---SRYR-LPRSNMPL---HEEVLEF 236 (296) T ss_pred HHHHHCCCCCEEEEEEEECCCC-CCHHHHHHHHHHHHHCCCCEEEEECCCCCCH---HHHC-CCCCCCCH---HHHHHHH T ss_conf 9740127874899999852646-8708899999999853997699834756876---7605-67001644---5999999 Q ss_pred HHHHHHHCCCCC Q ss_conf 655788709624 Q gi|254780628|r 239 TQSITSAHGLHA 250 (395) Q Consensus 239 a~e~L~~~GY~~ 250 (395) T Consensus 237 ~~~l~~~~~~~~ 248 (296) T COG0731 237 AKELGEELGYEI 248 (296) T ss_pred HHHHHCCCCEEE T ss_conf 998632357455 |
|
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism] | Back alignment and domain information |
---|
Probab=97.75 E-value=0.00064 Score=46.13 Aligned_cols=198 Identities=14% Similarity=0.163 Sum_probs=104.7 Q ss_pred EEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHC Q ss_conf 99994065118376577302457886628899999999999998761895058999628888878999999999766404 Q gi|254780628|r 20 GVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKN 99 (395) Q Consensus 20 ~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~ 99 (395) T Consensus 113 vLll~t~~C~vyCRyC-fRr~~~~~~~~-~~~~~~~~~al~YIa---~hPeI~eVllSGGDPL~ls~~~L~~ll~~L~~I 187 (369) T COG1509 113 VLLLVTGVCAVYCRYC-FRRRFVGQDNQ-GFNKEEWDKALDYIA---AHPEIREVLLSGGDPLSLSDKKLEWLLKRLRAI 187 (369) T ss_pred EEEEECCCCCCEEEEC-CCCCCCCCCCC-CCCHHHHHHHHHHHH---CCCHHHEEEECCCCCCCCCHHHHHHHHHHHHCC T ss_conf 8999648664521000-13455566656-678899999999997---395165177407875636889999999987548 Q ss_pred CCC-----CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCC---CCHHHHHHHHHHHCCCCC- Q ss_conf 764-----44332113321041002347766303454114323433201345542244---313478999986302444- Q gi|254780628|r 100 WTV-----SSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNH---NASEAIAAIHLARNIFPR- 170 (395) Q Consensus 100 ~~~-----~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~---~~~~~~~~~~~~~~~~~~- 170 (395) T Consensus 188 pHv~iiRi~TR~pv---v~P~RIt~~L~~~l~~~~~-~v~~~t-----------H~NHp~Eit~e~~~A~~~L~~aGv~l 252 (369) T COG1509 188 PHVKIIRIGTRLPV---VLPQRITDELCEILGKSRK-PVWLVT-----------HFNHPNEITPEAREACAKLRDAGVPL 252 (369) T ss_pred CCEEEEEEECCCCE---ECHHHHCHHHHHHHHCCCC-EEEEEC-----------CCCCHHHCCHHHHHHHHHHHHCCCEE T ss_conf 96469986246743---1544406999998723586-079980-----------35883546899999999999759565 Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC Q ss_conf 333210002585432211127887531800123464688259600014544980211035678899986557887096 Q gi|254780628|r 171 MSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGL 248 (395) Q Consensus 171 v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY 248 (395) T Consensus 253 ~NQsVLLrGVND~~evl~~L~~~L~~~gV~PYYl~~~D~~~G~~--------hfr~-~i~~~~~i~~~lr~~~--SG~ 319 (369) T COG1509 253 LNQSVLLRGVNDDPEVLKELSRALFDAGVKPYYLHQLDLVQGAA--------HFRV-PIAEGLQIVEELRGRT--SGY 319 (369) T ss_pred ECCHHEECCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCC--------CEEC-CHHHHHHHHHHHHHHC--CCC T ss_conf 32410114667999999999999997488621785167667723--------3514-0999999999999757--776 |
|
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only] | Back alignment and domain information |
---|
Probab=97.66 E-value=0.0029 Score=41.76 Aligned_cols=197 Identities=17% Similarity=0.250 Sum_probs=108.1 Q ss_pred CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCC---CEEE-EEEECCCCCCCCCHHHHHHHHHHHHHCCC-- Q ss_conf 11837657730245788662889999999999999876189---5058-99962888887899999999976640476-- Q gi|254780628|r 28 CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGP---RSIS-SIFFGGGTPSLIEPQNIALILDGIAKNWT-- 101 (395) Q Consensus 28 C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~---~~~~-~iy~GGGTPs~l~~~~l~~ll~~i~~~~~-- 101 (395) T Consensus 111 C~~~C~FCaT----g~~G~~RNLs~~EIv~Qv~~~~~~~~~~~~~~i~NVV~MGMGEP-l~N~dnV~~a~~i~~~~~G~~ 185 (349) T COG0820 111 CPVGCTFCAT----GQGGLNRNLSAGEIVEQVLLAAKALGEDFGRRISNVVFMGMGEP-LLNLDNVVKALEIINDDEGLG 185 (349) T ss_pred CCCCCCEECC----CCCCCEECCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCH-HHHHHHHHHHHHHHCCCCCCC T ss_conf 6788872645----66660112179999999999998617665643646999647860-666999999998626766666 Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHH-HHCCCCCEEEECCCCCCHHHHH---HHCCCCCHHHHHHHHHHHCC-CCCCCCCCC Q ss_conf 444332113321041002347766-3034541143234332013455---42244313478999986302-444333210 Q gi|254780628|r 102 VSSNVEITIEANPSSVEVNNFQGY-RKAGVNRISLGVQSLEEQSLRF---LGRNHNASEAIAAIHLARNI-FPRMSFDLI 176 (395) Q Consensus 102 ~~~~~e~t~E~~P~~~~~~~l~~l-~~~Gv~RiS~GvQs~~~~~l~~---~~R~~~~~~~~~~~~~~~~~-~~~v~iDli 176 (395) T Consensus 186 ls~-R~iTvS--TsGi~~~I~~l~~~~~~v~-LAiSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~~rVt~E-- 259 (349) T COG0820 186 LSK-RRITVS--TSGIVPRIRKLADEQLGVA-LAISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSGRRVTFE-- 259 (349) T ss_pred CCC-CEEEEE--CCCCCHHHHHHHHHCCCEE-EEEECCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEE-- T ss_conf 465-179996--5887576899875167758-9995068998999753323667988999999986222159668998-- Q ss_pred CCCCCCCCCCCCCCHHHHHHC---CCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 002585432211127887531---8001234646882596000145449802110356788999865578870962 Q gi|254780628|r 177 YALPKQTMTQWEMELQRALSY---AVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLH 249 (395) Q Consensus 177 ~GlPgqt~e~~~~~l~~~~~l---~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~ 249 (395) T Consensus 260 Y~Ll~~VND~-~e~A~~L~~ll~~~~~~VNLIP~Np~~~~~-y~--------r~~~~~i~~F~----~~L~~~gv~ 321 (349) T COG0820 260 YVLLDGVNDS-LEHAKELAKLLKGIPCKVNLIPYNPVPGSD-YE--------RSSKERIRKFL----KILKKAGVL 321 (349) T ss_pred EEECCCCCCC-HHHHHHHHHHHCCCCCEEEEEECCCCCCCC-CC--------CCCHHHHHHHH----HHHHHCCEE T ss_conf 6620465488-889999999856897449986068989977-44--------79689999999----999878846 |
|
>PRK11194 hypothetical protein; Provisional | Back alignment and domain information |
---|
Probab=97.49 E-value=0.0043 Score=40.65 Aligned_cols=198 Identities=13% Similarity=0.243 Sum_probs=106.2 Q ss_pred CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHH------CCCEEE-EEEECCCCCCCCCHHHHHHHHHHHHHC- Q ss_conf 118376577302457886628899999999999998761------895058-999628888878999999999766404- Q gi|254780628|r 28 CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLT------GPRSIS-SIFFGGGTPSLIEPQNIALILDGIAKN- 99 (395) Q Consensus 28 C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~------~~~~~~-~iy~GGGTPs~l~~~~l~~ll~~i~~~- 99 (395) T Consensus 113 C~m~C~FCaTG~~Gl~RNLt~~E----Iv~Qv~~~~~~l~~~~~~~~~~i~NiVfMGMGEP-L~NydnV~~ai~il~~~~ 187 (372) T PRK11194 113 CALECKFCSTAQQGFNRNLRVSE----IIGQVWRAAKIIGAAKVTGQRPITNVVMMGMGEP-LLNLNNVVPAMEIMLDDF 187 (372) T ss_pred CCCCCCCCCCCCCHHHCCCCHHH----HHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCH-HHHHHHHHHHHHHHCCCC T ss_conf 36899844588644304878899----9999999999853201236665321678437842-553999999999864854 Q ss_pred -CCCCCCCCCCCCCCCCCCHHHHHHHHHH-CCCCCEEEECCCCCCHHHHH---HHCCCCCHHHHHHHHHH-HCC---CCC Q ss_conf -7644433211332104100234776630-34541143234332013455---42244313478999986-302---444 Q gi|254780628|r 100 -WTVSSNVEITIEANPSSVEVNNFQGYRK-AGVNRISLGVQSLEEQSLRF---LGRNHNASEAIAAIHLA-RNI---FPR 170 (395) Q Consensus 100 -~~~~~~~e~t~E~~P~~~~~~~l~~l~~-~Gv~RiS~GvQs~~~~~l~~---~~R~~~~~~~~~~~~~~-~~~---~~~ 170 (395) T Consensus 188 g~~~s-~R~ITvST~--Gi-vp~I~~l~e~~~v~-LAiSLHA~~de~R~~lmPin~~ypl~~L~~a~~~y~~~t~~~~~r 262 (372) T PRK11194 188 GFGLS-KRRVTLSTS--GV-VPALDKLGDMIDVA-LAISLHAPNDELRDEIVPINKKYNIETFLAAVRRYLEKSNANQGR 262 (372) T ss_pred CCCCC-CCEEEEECC--CC-CHHHHHHHHHCCCC-EEEEECCCCHHHHHHHHCHHCCCCHHHHHHHHHHHHHHHCCCCCE T ss_conf 66777-785899777--87-26999998631565-698715898688987711031589899999999999970678852 Q ss_pred CCCC-CCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 3332-100025854322111278875318001234646882596000145449802110356788999865578870962 Q gi|254780628|r 171 MSFD-LIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLH 249 (395) Q Consensus 171 v~iD-li~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~ 249 (395) T Consensus 263 vt~EYvLi~gvNDs~e~A~~L~~-llk~~~~~VNLIp~Np~~~~~~---------~~p~~~~i~~F----~~~L~~~gi~ 328 (372) T PRK11194 263 VTVEYVMLDHVNDSTEHAHQLAE-LLKDTPCKINLIPWNPFPGAPY---------GRSSNSRIDRF----SKVLMEYGFT 328 (372) T ss_pred EEEEEEEECCCCCCHHHHHHHHH-HHCCCCCCEEEECCCCCCCCCC---------CCCCHHHHHHH----HHHHHHCCCC T ss_conf 89999983687899999999999-9759986077456899899888---------79999999999----9999978991 |
|
>TIGR00510 lipA lipoic acid synthetase; InterPro: IPR003698 Lipoic acid is a covalently bound disulphide-containing cofactor required for function of the pyruvate dehydrogenase, alpha-ketoglutarate dehydrogenase, and glycine cleavage enzyme complexes of Escherichia coli | Back alignment and domain information |
---|
Probab=96.71 E-value=0.0086 Score=38.63 Aligned_cols=207 Identities=14% Similarity=0.159 Sum_probs=118.0 Q ss_pred CCCCCCCCCCCCCEEE-ECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEE-----EECCCCCCCCCHHHHHHHHHHHHH Q ss_conf 0651183765773024-5788662889999999999999876189505899-----962888887899999999976640 Q gi|254780628|r 25 WPFCVKKCPYCDFNSH-VRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSI-----FFGGGTPSLIEPQNIALILDGIAK 98 (395) Q Consensus 25 iPFC~~~C~yC~f~~~-~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i-----y~GGGTPs~l~~~~l~~ll~~i~~ 98 (395) T Consensus 76 g~~c~~~c~fc~~~~~~~p~~pdp~ep--~~~~~~~~~~~--l~~~~~~~~~~ddl~dgg-------~~~~~~~~~~~~~ 144 (310) T TIGR00510 76 GDICTRRCPFCDVAHGRNPLPPDPEEP--EKLAETIKDLG--LKYVVITSVDRDDLEDGG-------AGHLAECVEALRE 144 (310) T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCH--HHHHHHHHHHC--CCEEEEEECCCCCCCCCC-------HHHHHHHHHHHHH T ss_conf 136522476310224677898873322--56899998730--553577512200023453-------4678999999875 Q ss_pred CCCCCCCCCCCCCC-CCCCC--HHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCC--C Q ss_conf 47644433211332-10410--0234776630345411432343320134554224431347899998630244433--3 Q gi|254780628|r 99 NWTVSSNVEITIEA-NPSSV--EVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMS--F 173 (395) Q Consensus 99 ~~~~~~~~e~t~E~-~P~~~--~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~--i 173 (395) T Consensus 145 ~~p~-----~~~e~l~~df~g~~~~~~~~~~~~~~~~~~hn~e~~~~~~~~~~~~~~~y~~~l~~l~~~~~~~p~~~~k~ 219 (310) T TIGR00510 145 KLPN-----IKIETLVPDFRGRDLKALDILLDAPPDVYNHNLETVPRLTPFVRPRGATYRWSLKLLERAKETLPNLPTKS 219 (310) T ss_pred HCCC-----CEEEEECCCCCHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 2454-----13210013201046899998862461345301123345433330133216889999999887503210112 Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC Q ss_conf 21000258543221112788753180012346468825960001454498021103567889998655788709624236 Q gi|254780628|r 174 DLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEI 253 (395) Q Consensus 174 Dli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~Yei 253 (395) T Consensus 220 g~~~gl-ge~~~~~~~~~~dl~~~g~~~~~~g~y~~p----~~~h~p~~~y~~p------~~fd~~~~~~~~~gf~~~~~ 288 (310) T TIGR00510 220 GLMVGL-GETNEEILQTLKDLRDHGVTVLTLGQYLRP----SRRHLPVKRYVSP------EEFDYWKERALELGFLHAAC 288 (310) T ss_pred CCEECC-CCCHHHHHHHHHHHHHCCCCEEECCCHHCC----HHHCCCCHHCCCC------CHHHHHHHHHHHHHHHHHHC T ss_conf 201104-752478999999898637405650101052----0012530002574------02467887776510244320 Q ss_pred CCHHH Q ss_conf 74343 Q gi|254780628|r 254 SNHSF 258 (395) Q Consensus 254 s~fak 258 (395) T Consensus 289 gp~~~ 293 (310) T TIGR00510 289 GPFVR 293 (310) T ss_pred CCHHH T ss_conf 42021 |
Two genes, lipA and lipB, are involved in lipoic acid biosynthesis or metabolism. LipA is required for the insertion of the first sulphur into the octanoic acid backbone. LipB functions downstream of LipA, but its role in lipoic acid metabolism remains unclear . Lipoate synthase (or lipoic acid synthetase) catalyses the formation of alpha-(+)-lipoic acid, required for lipoate biosynthesis.; GO: 0016992 lipoate synthase activity, 0009107 lipoate biosynthetic process. |
>COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only] | Back alignment and domain information |
---|
Probab=96.28 E-value=0.011 Score=38.06 Aligned_cols=207 Identities=16% Similarity=0.290 Sum_probs=105.7 Q ss_pred CCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHH-HHHHCCCEEEEEEECCCCCCCCCH-HHHHHHHHHHHH---CC Q ss_conf 6511837657730245788662889999999999999-876189505899962888887899-999999976640---47 Q gi|254780628|r 26 PFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWM-RQLTGPRSISSIFFGGGTPSLIEP-QNIALILDGIAK---NW 100 (395) Q Consensus 26 PFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~-~~~~~~~~~~~iy~GGGTPs~l~~-~~l~~ll~~i~~---~~ 100 (395) T Consensus 62 N~CiyDC~YCIN---r~s~~~pra~ft---p~Eiv~ltlnfYrRnYIeGLFLSSGv--i~~~DyTmE~mi~var~LRle~ 133 (404) T COG4277 62 NFCIYDCAYCIN---RSSNDTPRARFT---PEEIVDLTLNFYRRNYIEGLFLSSGV--IKNPDYTMEEMIEVARILRLEH 133 (404) T ss_pred HHHHHHHHHHHC---CCCCCCCCCCCC---HHHHHHHHHHHHHHHHHHHHEECCCC--CCCCCHHHHHHHHHHHHHHHCC T ss_conf 257776388755---555788543058---99999999989887424330002463--3686147999999999883204 Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHCC--CCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC----------- Q ss_conf 64443321133210410023477663034--54114323433201345542244313478999986302----------- Q gi|254780628|r 101 TVSSNVEITIEANPSSVEVNNFQGYRKAG--VNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI----------- 167 (395) Q Consensus 101 ~~~~~~e~t~E~~P~~~~~~~l~~l~~~G--v~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~----------- 167 (395) T Consensus 134 ~f~G--YIHlK~IPga-s~~---li~eaglyadRvSiNIElp~~~~lk~lap~K~p~dI~r~Mg~ir~~i~e~~e~~~r~ 207 (404) T COG4277 134 KFRG--YIHLKIIPGA-SPD---LIKEAGLYADRVSINIELPTDDGLKLLAPEKDPTDILRSMGWIRLKILENAEDKRRK 207 (404) T ss_pred CCCC--EEEEEECCCC-CHH---HHHHHHHHHHEEEEEEECCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHH T ss_conf 5575--7998756999-989---999986534105776744886446661888883788889899998776515502221 Q ss_pred -----C-CC-CCCCCCCCCCCCCCCCCCCCHHHHH-HCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHH Q ss_conf -----4-44-3332100025854322111278875-31800123464688259600014544980211035678899986 Q gi|254780628|r 168 -----F-PR-MSFDLIYALPKQTMTQWEMELQRAL-SYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLT 239 (395) Q Consensus 168 -----~-~~-v~iDli~GlPgqt~e~~~~~l~~~~-~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a 239 (395) T Consensus 208 r~tp~fapaGQSTQmivGA~~~tD~~Ilsrs~~ly~~y~lkRVyySaf~Pv~~s~~lp~~~------pplmRehRLYQ-A 280 (404) T COG4277 208 RHTPEFAPAGQSTQMIVGADGETDEDILSRSENLYGRYSLKRVYYSAFSPVPSSPLLPDDK------PPLMREHRLYQ-A 280 (404) T ss_pred CCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCC------CCHHHHHHHHH-H T ss_conf 0472336778732788715887448899888877532431489862133368898886667------85367777777-7 Q ss_pred HHHHHHCCCCCCCC Q ss_conf 55788709624236 Q gi|254780628|r 240 QSITSAHGLHAYEI 253 (395) Q Consensus 240 ~e~L~~~GY~~Yei 253 (395) T Consensus 281 DwLlrfYgF~~~Ei 294 (404) T COG4277 281 DWLLRFYGFSADEI 294 (404) T ss_pred HHHHHHHCCCHHHH T ss_conf 78999708887888 |
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>TIGR00048 TIGR00048 radical SAM enzyme, Cfr family; InterPro: IPR004383 This family of conserved hypothetical proteins groups bacterial proteins of unknown function | Back alignment and domain information |
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Probab=94.92 E-value=0.35 Score=28.02 Aligned_cols=198 Identities=17% Similarity=0.303 Sum_probs=118.7 Q ss_pred CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHH------HHCCCEEEEE-EECCCCCCCCCHHHHHHHHHHHHHCC Q ss_conf 1183765773024578866288999999999999987------6189505899-96288888789999999997664047 Q gi|254780628|r 28 CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQ------LTGPRSISSI-FFGGGTPSLIEPQNIALILDGIAKNW 100 (395) Q Consensus 28 C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~------~~~~~~~~~i-y~GGGTPs~l~~~~l~~ll~~i~~~~ 100 (395) T Consensus 131 C~~~C~FC~----T~~gGf~RNL~~~EIi~Qv~~~~k~~G~~~~~~erP~~nvV~MGmGEP-L~Nl~~vv~a~ei~n~~~ 205 (378) T TIGR00048 131 CALGCTFCA----TAKGGFNRNLEASEIIGQVLRVQKILGAAEETGERPVSNVVFMGMGEP-LLNLNEVVKALEILNDDV 205 (378) T ss_pred CCCCCCCCC----CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCC-CCCHHHHHHHHHHHHHHH T ss_conf 422551033----457875214510338999999999834557776654047887467871-011799999999874222 Q ss_pred C--CCCCCCCCCCCCCCCCHHHHHHHHHH--CCCCCEEEECCCCCCHHHHH---HHCCCCCHHHHHHHH-HHHCCCC--- Q ss_conf 6--44433211332104100234776630--34541143234332013455---422443134789999-8630244--- Q gi|254780628|r 101 T--VSSNVEITIEANPSSVEVNNFQGYRK--AGVNRISLGVQSLEEQSLRF---LGRNHNASEAIAAIH-LARNIFP--- 169 (395) Q Consensus 101 ~--~~~~~e~t~E~~P~~~~~~~l~~l~~--~Gv~RiS~GvQs~~~~~l~~---~~R~~~~~~~~~~~~-~~~~~~~--- 169 (395) T Consensus 206 g~~is~-r~~T~STs---Gv~~ki~~Lad~~l~V~-lAiSLHApn~~~R~~l~P~nk~Y~ie~ll~~vr~Y~~~~~~n~G 280 (378) T TIGR00048 206 GLGISK-RRITISTS---GVVPKIDELADKMLQVA-LAISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLEKTGRNQG 280 (378) T ss_pred HCCCCC-CEEEEEEC---CHHHHHHHHCCCCCCEE-EEEEECCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCC T ss_conf 036567-33788735---71458888513211033-44553288711244406500147867999999875864276777 Q ss_pred CCCCC-CCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC Q ss_conf 43332-10002585432211127887531800123464688259600014544980211035678899986557887096 Q gi|254780628|r 170 RMSFD-LIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGL 248 (395) Q Consensus 170 ~v~iD-li~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY 248 (395) T Consensus 281 RV~fEY~Ll~~vND~~~HA-~~La~lL~g~~ckvNLIP~NP~~e~~Y~R---------~s~-~~i~~F---~~~L~s~g~ 346 (378) T TIGR00048 281 RVTFEYVLLDGVNDQVEHA-EELAELLKGVKCKVNLIPFNPFPEADYER---------PSN-EQIDRF---AKVLKSKGL 346 (378) T ss_pred CEEEEEEECCCCCCCHHHH-HHHHHHHCCCCCEEEEEECCCCCCCCCCC---------CCH-HHHHHH---HHHHHHCCC T ss_conf 2688742002468858899-99999856998504012137879888888---------808-899999---998620883 Q ss_pred C Q ss_conf 2 Q gi|254780628|r 249 H 249 (395) Q Consensus 249 ~ 249 (395) T Consensus 347 ~ 347 (378) T TIGR00048 347 T 347 (378) T ss_pred E T ss_conf 7 |
. |
>PRK13762 tRNA-modifying enzyme; Provisional | Back alignment and domain information |
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Probab=91.53 E-value=1.2 Score=24.45 Aligned_cols=203 Identities=10% Similarity=0.192 Sum_probs=106.9 Q ss_pred CCCCCCCCCCCCCE--EEECC----CCCCHHHHHHHHHHH-HHHHHHHHCCCEEE-------------EEEECCCCCCCC Q ss_conf 06511837657730--24578----866288999999999-99998761895058-------------999628888878 Q gi|254780628|r 25 WPFCVKKCPYCDFN--SHVRR----YKVGQENFIQSFLTE-MQWMRQLTGPRSIS-------------SIFFGGGTPSLI 84 (395) Q Consensus 25 iPFC~~~C~yC~f~--~~~~~----~~~~~~~y~~~l~~E-i~~~~~~~~~~~~~-------------~iy~GGGTPs~l 84 (395) T Consensus 65 l~~C~~~CvfCWR~~~~~~~~~~~~~~DdPe~Ive~~i~~h~~li~g~kG~p~v~~er~~EA~~p~H~AiSL-~GEPtlY 143 (321) T PRK13762 65 LAWCNQRCLFCWRPLEEDVGLLKPPEWDDPEEIVEESIKEQRKLLSGYKGNPKVDKEKFEEALEPKHVAISL-SGEPTLY 143 (321) T ss_pred HHHHHCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCHHEEHHH-CCCCCCC T ss_conf 777744485656899888766677888898999999999999997305899998989998727910010220-4886320 Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCC---HHHHHHH Q ss_conf 9999999997664047644433211332104100234776630345411432343320134554224431---3478999 Q gi|254780628|r 85 EPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNA---SEAIAAI 161 (395) Q Consensus 85 ~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~---~~~~~~~ 161 (395) T Consensus 144 --P~l~eLi~~~h~r-~~stF-LVT-----Ng~~P~~l~~l~~~-PTQLYvSldAp~~e~~k~i~rPl~~d~Wer~~~sL 213 (321) T PRK13762 144 --PRLPELIEEFHKR-GFTTF-LVT-----NGTRPDVLEKLEAE-PTQLYVSLDAPDKETYNRINRPVIPDAWERILETL 213 (321) T ss_pred --HHHHHHHHHHHHC-CCCEE-EEE-----CCCCHHHHHHCCCC-CCEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHH T ss_conf --2189999999857-98379-982-----89898999856676-54279980069999999861655331899999999 Q ss_pred HHHHCCC-CC-CCCCCCCCCCCCCCCCCCCCHHHHHH-CCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHH Q ss_conf 9863024-44-33321000258543221112788753-180012346468825960001454498021103567889998 Q gi|254780628|r 162 HLARNIF-PR-MSFDLIYALPKQTMTQWEMELQRALS-YAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNL 238 (395) Q Consensus 162 ~~~~~~~-~~-v~iDli~GlPgqt~e~~~~~l~~~~~-l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~ 238 (395) T Consensus 214 ~~L~~~~~RTV~R~TLVkg~Nm~~~~----~yA~Li~~~~P~FIEvK~ym~~G~Sr--~r--Lt~~nmP~heEV~---~F 282 (321) T PRK13762 214 ELLPSKKTRTVIRITLVKGLNMTDPE----GYAKLIERANPDFVEVKAYMHVGYSR--NR--LTRDNMPSHEEVR---EF 282 (321) T ss_pred HHHHCCCCCEEEEEEEECCCCCCCHH----HHHHHHHHCCCCEEEEEEEEEECCCC--CC--CCHHHCCCHHHHH---HH T ss_conf 97543798759999876565767989----99999985499879871179842677--76--7722399889999---99 Q ss_pred HHHHHHHCCCC Q ss_conf 65578870962 Q gi|254780628|r 239 TQSITSAHGLH 249 (395) Q Consensus 239 a~e~L~~~GY~ 249 (395) T Consensus 283 a~~l~~~~~Y~ 293 (321) T PRK13762 283 AKELAEHLGYK 293 (321) T ss_pred HHHHHHHCCCE T ss_conf 99999863986 |
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>KOG4355 consensus | Back alignment and domain information |
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Probab=99.05 E-value=1e-09 Score=84.43 Aligned_cols=89 Identities=20% Similarity=0.190 Sum_probs=79.8 Q ss_pred EEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC--CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEE Q ss_conf 14323433201345542244313478999986302--4443332100025854322111278875318001234646882 Q gi|254780628|r 133 ISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI--FPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIE 210 (395) Q Consensus 133 iS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~--~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~ 210 (395) T Consensus 301 lhvpvqsgsdsvl~emkreyc~~dfk~Vvd~LterVPgi~IATDiIcgFPtETdeDFeeTmeLv~kYKFPslfInQfyPR 380 (547) T KOG4355 301 LHVPVQSGSDSVLTEMKREYCNFDFKIVVDFLTERVPGITIATDIICGFPTETDEDFEETMELVRKYKFPSLFINQFYPR 380 (547) T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCC T ss_conf 83243357436888877787645678899888754798188621242488871677999999999716854035304799 Q ss_pred CCCEEHHHHHC Q ss_conf 59600014544 Q gi|254780628|r 211 KGTLFYKMHKD 221 (395) Q Consensus 211 ~~t~l~~~~~~ 221 (395) T Consensus 381 pGTPAAkmkki 391 (547) T KOG4355 381 PGTPAAKMKKI 391 (547) T ss_pred CCCHHHHHHCC T ss_conf 98817865224 |
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>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10 | Back alignment and domain information |
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Probab=97.62 E-value=0.0028 Score=41.82 Aligned_cols=131 Identities=11% Similarity=0.088 Sum_probs=83.1 Q ss_pred EEEEE-EECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHH Q ss_conf 05899-96288888789999999997664047644433211332104100234776630345411432343320134554 Q gi|254780628|r 70 SISSI-FFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFL 148 (395) Q Consensus 70 ~~~~i-y~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~ 148 (395) T Consensus 73 ~~~kitISgGGD~ScYP--~l~eL~~~l~~~-~lpiHLGYT--SGKGfd~~~~a~~li~~Gv~EVtfTVFatDp~LR~ew 147 (404) T TIGR03278 73 RDTKVTISGGGDVSCYP--ELEELTKGLSDL-GLPIHLGYT--SGKGFDDPEIAEFLIDNGVREVSFTVFATDPELRREW 147 (404) T ss_pred CCEEEEEECCCCCCCCC--CHHHHHHHHHHC-CCCEEECCC--CCCCCCCHHHHHHHHHCCCCEEEEEEEECCHHHHHHH T ss_conf 72289980798844163--199999999866-983574123--7889898799999996797379999860898999987 Q ss_pred HCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC-CCCCCCHHHHHHCCCCCEEEEEE Q ss_conf 224431347899998630244433321000258543-22111278875318001234646 Q gi|254780628|r 149 GRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTM-TQWEMELQRALSYAVDHLSLYQL 207 (395) Q Consensus 149 ~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~-e~~~~~l~~~~~l~p~~is~Y~l 207 (395) T Consensus 148 M~D~~pE~SL~~L~~fc~~cev~~A--~ViiPGVNDGevL~kT~~~Le~wGakg~ILMRF 205 (404) T TIGR03278 148 MKDPTPEASLQCLRRFCESCEVHAA--SVIIPGVNDGDVLWKTCADLESWGAKALILMRF 205 (404) T ss_pred CCCCCHHHHHHHHHHHHHHHHHEEE--EEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEE T ss_conf 1699868899999999844111378--998068685699999999999838756898740 |
Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon. |
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion] | Back alignment and domain information |
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Probab=97.58 E-value=0.0018 Score=43.16 Aligned_cols=167 Identities=12% Similarity=0.161 Sum_probs=112.7 Q ss_pred EEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC-CCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCC Q ss_conf 99628888878999999999766404764443321133-21041002347766303454114323433201345542244 Q gi|254780628|r 74 IFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIE-ANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNH 152 (395) Q Consensus 74 iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E-~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~ 152 (395) T Consensus 83 ~~~~~~d~~c~-p~-le~~~~r~~~~~~d~-~~rL~~tsG~~-~~lt~~~~~i~~~gvdev~~SVhtT~p~lR~klm~n~ 158 (414) T COG1625 83 KQCGNGDTFCY-PD-LEPRGRRARLYYKDD-DIRLSFTSGSG-FTLTNRAERIIDAGVDEVYFSVHTTNPELRAKLMKNP 158 (414) T ss_pred EECCCCCCCCC-CC-HHHHHHHHHHHCCCC-CCEEEEEECCC-EECCCHHHHHHHCCCCEEEEEEEECCHHHHHHHHCCC T ss_conf 11279986657-31-112666787615884-40356531263-0154268999976998069999608989999986398 Q ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC-CCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHH Q ss_conf 3134789999863024443332100025854-322111278875318001234646882596000145449802110356 Q gi|254780628|r 153 NASEAIAAIHLARNIFPRMSFDLIYALPKQT-MTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENV 231 (395) Q Consensus 153 ~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt-~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~ 231 (395) T Consensus 159 ~A~~~le~L~~f~~~~~~v~a~iV-l~PGvNdge~L~kT~~dL~~~g~~~~~~~~-~~pvGlt~~n~~---~i~~~t~~~ 233 (414) T COG1625 159 NAEQLLELLRRFAERCIEVHAQIV-LCPGVNDGEELEKTLEDLEEWGAHEVILMR-VVPVGLTRYNRP---GIRPPTPHE 233 (414) T ss_pred CHHHHHHHHHHHHHHHHHEEEEEE-ECCCCCCHHHHHHHHHHHHHHCCCCEEEEE-EECCEEEECCCC---CCCCCCHHH T ss_conf 677899999999975311356799-857857577799999999972867336898-631211523777---778778789 Q ss_pred HHHHHHHHHHHHHHCC-CC Q ss_conf 7889998655788709-62 Q gi|254780628|r 232 AVDLYNLTQSITSAHG-LH 249 (395) Q Consensus 232 ~~~~~~~a~e~L~~~G-Y~ 249 (395) T Consensus 234 l~~~k~i~re~~~E~~~~~ 252 (414) T COG1625 234 LEEFKEIVREFDRELGSIR 252 (414) T ss_pred HHHHHHHHHHHHHHCCCEE T ss_conf 9999999999997538669 |
|
>PRK10076 pyruvate formate lyase II activase; Provisional | Back alignment and domain information |
---|
Probab=97.35 E-value=0.0027 Score=41.94 Aligned_cols=183 Identities=11% Similarity=0.132 Sum_probs=111.0 Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC Q ss_conf 99999999999876189505899962888887899999999976640476444332113321041002347766303454 Q gi|254780628|r 52 IQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVN 131 (395) Q Consensus 52 ~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~ 131 (395) T Consensus 21 veel~~~i~kd~~fy~~S-gGGVT~SGGEpl~-Q~~F~~ellk~~k~~-gi----htaieTs-G~~~~~~~~~~~~~-~D 91 (213) T PRK10076 21 LDALEREVMKDDIFFRTS-GGGVTLSGGEVLM-QAEFATRFLQRLRLW-GV----SCAIETA-GDAPASKLLPLAKL-CD 91 (213) T ss_pred HHHHHHHHHHHHHHHHCC-CCEEEEECCHHHC-CHHHHHHHHHHHHHC-CC----CEEEECC-CCCCHHHHHHHHHH-CC T ss_conf 999999999719998247-9807860752635-999999999999866-99----8899768-88889999999984-59 Q ss_pred CEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCC--CCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEE Q ss_conf 11432343320134554224431347899998630244433--3210002585432211127887531800123464688 Q gi|254780628|r 132 RISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMS--FDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTI 209 (395) Q Consensus 132 RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~--iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i 209 (395) T Consensus 92 l~L~DiK~~d~~~h~~~T-G~~n~~il~Nl~~l~~~~~~v~iR~pvIPg~n-d~~e~i~~~~~f~~~l~v~~veLLPYH~ 169 (213) T PRK10076 92 EVLFDLKIMDATQARDVV-KMNLPRVLENLRLLVSEGVNVIPRLPLIPGFT-LSRENMQQALDVLIPLNIRQIHLLPFHQ 169 (213) T ss_pred EEEEEECCCCHHHHHHHH-CCCHHHHHHHHHHHHHCCCCEEEEEEEECCCC-CCHHHHHHHHHHHHHCCCCEEEECCCCH T ss_conf 899861779848999997-99939999999999967996899886779978-9999999999999986997799718841 Q ss_pred E---CCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 2---596000145449802110356788999865578870962 Q gi|254780628|r 210 E---KGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLH 249 (395) Q Consensus 210 ~---~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~ 249 (395) T Consensus 170 ~G~~Ky~~Lg~~Y~l~~~~~p~~e~~~----~~~~i~~~~G~~ 208 (213) T PRK10076 170 YGEPKYRLLGKTWSMKEVPAPSSADVA----TMREMAERAGFQ 208 (213) T ss_pred HHHHHHHHHCCCCCCCCCCCCCHHHHH----HHHHHHHHCCCE T ss_conf 307999997887877899985999999----999999966985 |
|
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE | Back alignment and domain information |
---|
Probab=96.66 E-value=0.0035 Score=41.26 Aligned_cols=100 Identities=18% Similarity=0.277 Sum_probs=57.9 Q ss_pred HHCCCCCC--CEEEEEECCCCCCCCCCCCCE-EEECCCCCC-HHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCC Q ss_conf 84288988--549999406511837657730-245788662-88999999999999987618950589996288888789 Q gi|254780628|r 10 NMTGQGSN--SLGVYVHWPFCVKKCPYCDFN-SHVRRYKVG-QENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIE 85 (395) Q Consensus 10 ~~~~~~~~--~l~lYihiPFC~~~C~yC~f~-~~~~~~~~~-~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~ 85 (395) T Consensus 12 SiQGEG~~~G~p~vFvR~~GCnl~C~~CDT~y~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~V~iTGGEPllq- 86 (238) T TIGR03365 12 TIQGEGMVIGQKTMFVRTGGCDYRCSWCDSLFTWDGSAKDTWRPMTAEEVWQELKAL----GGGTPLHVSLSGGNPALQ- 86 (238) T ss_pred CCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH----CCCCCCEEEECCCCHHHH- T ss_conf 556788133731899940898986765898876178788775637899999999983----489861899459983444- Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHH Q ss_conf 999999997664047644433211332104100234 Q gi|254780628|r 86 PQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNN 121 (395) Q Consensus 86 ~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~ 121 (395) T Consensus 87 -~~~~~L~~~l~~-----~g~~v~iETn-Gt~~~~~ 115 (238) T TIGR03365 87 -KPLGELIDLGKA-----KGYRFALETQ-GSVWQDW 115 (238) T ss_pred -CCHHHHHHHHHH-----CCCEEEEECC-CCCCCCC T ss_conf -189999999985-----7984999789-9876000 |
This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine. |
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
---|
Probab=94.83 E-value=0.04 Score=34.24 Aligned_cols=83 Identities=20% Similarity=0.405 Sum_probs=48.9 Q ss_pred HHCCCCC--CCEEEEEECCCCCCCCCCCCCE-EEECC-CCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCC Q ss_conf 8428898--8549999406511837657730-24578-866288999999999999987618950589996288888789 Q gi|254780628|r 10 NMTGQGS--NSLGVYVHWPFCVKKCPYCDFN-SHVRR-YKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIE 85 (395) Q Consensus 10 ~~~~~~~--~~l~lYihiPFC~~~C~yC~f~-~~~~~-~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~ 85 (395) T Consensus 12 siQGEG~~~Gr~~vFVR~~GC~l~C~~Cdt~~t~~~~~~~~~~~~~~~~I~~~i~~~-----~~~~~~V~lTGGEP--~~ 84 (212) T COG0602 12 SIQGEGKNIGRPSVFVRFAGCNLRCPGCDTKYTWDFNYGKPGTPMSADEILADIKSL-----GYKARGVSLTGGEP--LL 84 (212) T ss_pred EEECCCCCCCCEEEEEECCCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHC-----CCCCCEEEEECCCC--CC T ss_conf 881686636714899976897887899898766063336898825899999999850-----88876699818864--66 Q ss_pred HHHHHHHHHHHHHC Q ss_conf 99999999766404 Q gi|254780628|r 86 PQNIALILDGIAKN 99 (395) Q Consensus 86 ~~~l~~ll~~i~~~ 99 (395) T Consensus 85 ~~~l~~Ll~~l~~~ 98 (212) T COG0602 85 QPNLLELLELLKRL 98 (212) T ss_pred CCCHHHHHHHHHHC T ss_conf 22399999999858 |
|
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein; InterPro: IPR012837 This enzyme is a member of the radical-SAM protein and utilises S-adenosyl methionine, an iron-sulphur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centred radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, IPR009161 from INTERPRO) | Back alignment and domain information |
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Probab=92.01 E-value=0.52 Score=26.84 Aligned_cols=87 Identities=21% Similarity=0.455 Sum_probs=54.8 Q ss_pred HHCCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCC-EEEEEEECCCCCCC-CCHH Q ss_conf 842889885499994065118376577302457886628899999999999998761895-05899962888887-8999 Q gi|254780628|r 10 NMTGQGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPR-SISSIFFGGGTPSL-IEPQ 87 (395) Q Consensus 10 ~~~~~~~~~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~-~~~~iy~GGGTPs~-l~~~ 87 (395) T Consensus 10 ~vNG~G~R-~slfv--aGC~H~C~GC-~N~~TW~~~~G~~-~t~~~~~~i~~--~l~~~~~~~~G~tlsGGDPL~~~N~~ 82 (158) T TIGR02491 10 IVNGEGIR-VSLFV--AGCKHHCEGC-FNKETWNFNGGEE-FTEELEKEIIR--DLNDNPILIDGLTLSGGDPLYPANVE 82 (158) T ss_pred EECCCCEE-EEEEE--CCCCCCCCCC-CCCCCCCCCCCCC-CCHHHHHHHHH--HHCCCCCEEEEEEECCCCCCCCCCHH T ss_conf 35488048-99860--4760388888-7835557678942-03688999999--85128816630143188888724436 Q ss_pred HHHHHHHHHHHCCCCC Q ss_conf 9999997664047644 Q gi|254780628|r 88 NIALILDGIAKNWTVS 103 (395) Q Consensus 88 ~l~~ll~~i~~~~~~~ 103 (395) T Consensus 83 ~~~~l~k~~k~~~P~k 98 (158) T TIGR02491 83 ELIELVKKIKAELPEK 98 (158) T ss_pred HHHHHHHHHHHHCCCC T ss_conf 8999999999857899 |
The two components form an alpha-2/beta-2 heterodimer.; GO: 0043365 [formate-C-acetyltransferase]-activating enzyme activity, 0051539 4 iron 4 sulfur cluster binding, 0005737 cytoplasm. |
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional | Back alignment and domain information |
---|
Probab=91.91 E-value=0.39 Score=27.64 Aligned_cols=91 Identities=21% Similarity=0.465 Sum_probs=45.3 Q ss_pred CCHHHHHHHHH-CCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCC--H-HHHHHHHHHHHHHHHHHHCCCEEEEEEE Q ss_conf 91137899884-288988549999406511837657730245788662--8-8999999999999987618950589996 Q gi|254780628|r 1 MKYLSAYENNM-TGQGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVG--Q-ENFIQSFLTEMQWMRQLTGPRSISSIFF 76 (395) Q Consensus 1 ~~~~~~~~~~~-~~~~~~~l~lYihiPFC~~~C~yC~f~~~~~~~~~~--~-~~y~~~l~~Ei~~~~~~~~~~~~~~iy~ 76 (395) T Consensus 1 M~~~~~~~~~~vnGPG~R-~~iw~--qGC~~~C~GC-~Np~tw~~~~G~~~~~~~~~~ii~~l~~~-----~~~~~GvTi 71 (154) T PRK11121 1 MNYHQYYPVDVVNGPGTR-CTLFV--SGCVHQCPGC-YNKSTWRLNSGHPFTKAMEDQIIADLNDT-----RIKRQGLSL 71 (154) T ss_pred CCCCCEEECCEECCCCEE-EEEEE--CCCCCCCCCC-CCHHHCCCCCCEECHHHHHHHHHHHHHHC-----CCCCCCEEE T ss_conf 964221585443489779-99995--6887779799-99778587589776199999999987642-----355475388 Q ss_pred CCCCCCCC--CHHHHHHHHHHHHHCCC Q ss_conf 28888878--99999999976640476 Q gi|254780628|r 77 GGGTPSLI--EPQNIALILDGIAKNWT 101 (395) Q Consensus 77 GGGTPs~l--~~~~l~~ll~~i~~~~~ 101 (395) T Consensus 72 sGGEP-~~q~~~~~l~~l~~~~k~~~~ 97 (154) T PRK11121 72 SGGDP-LHPQNVPAILKLVKRVKAECP 97 (154) T ss_pred ECCCC-CCCCCHHHHHHHHHHHHHHCC T ss_conf 68882-651479999999999997589 |
|
>COG2238 RPS19A Ribosomal protein S19E (S16A) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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Probab=94.92 E-value=0.044 Score=33.95 Aligned_cols=57 Identities=19% Similarity=0.381 Sum_probs=41.7 Q ss_pred HHCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHHHC Q ss_conf 62379988899988389964999999998799498559899995675898999999861 Q gi|254780628|r 336 RLREGISVKDWEMLAGRNLDIECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLA 394 (395) Q Consensus 336 R~~~Gid~~~~~~~fg~~~~~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~l~ 394 (395) T Consensus 80 ~k~rG~rP~~~~~gsg-sI~RkilqqLE~~G~V~k~~~GR-~ltp~GrsllD~~a~ei~ 136 (147) T COG2238 80 RKNRGSRPEKFRKGSG-SIIRKVLQQLEKAGLVEKTPKGR-VLTPKGRSLLDRIATEIK 136 (147) T ss_pred CCCCCCCCHHHHCCCC-HHHHHHHHHHHHCCCEEECCCCC-EECCCCHHHHHHHHHHHH T ss_conf 6668889434423773-69999999999778565268986-508130658999999999 |
|
>PRK09333 30S ribosomal protein S19e; Provisional | Back alignment and domain information |
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Probab=94.61 E-value=0.068 Score=32.71 Aligned_cols=40 Identities=20% Similarity=0.399 Sum_probs=34.2 Q ss_pred HHHHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHHHC Q ss_conf 64999999998799498559899995675898999999861 Q gi|254780628|r 354 LDIECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLA 394 (395) Q Consensus 354 ~~~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~l~ 394 (395) T Consensus 97 iiR~~LQqLE~~glvek~~~GR-~iT~~G~~~LD~iA~~v~ 136 (150) T PRK09333 97 IIRKALQQLEAAGLVEKTKKGR-VITPKGRSLLDKLATEVK 136 (150) T ss_pred HHHHHHHHHHHCCCEEECCCCC-EECHHHHHHHHHHHHHHH T ss_conf 9999999998788857679986-779868999999999999 |
|
>PRK03902 manganese transport transcriptional regulator; Provisional | Back alignment and domain information |
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Probab=93.76 E-value=0.61 Score=26.40 Aligned_cols=52 Identities=12% Similarity=0.167 Sum_probs=37.1 Q ss_pred CCHHHHHHHHCCCHH--HHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHH Q ss_conf 988899988389964--9999999987994985598999956758989999998 Q gi|254780628|r 341 ISVKDWEMLAGRNLD--IECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIAN 392 (395) Q Consensus 341 id~~~~~~~fg~~~~--~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~ 392 (395) T Consensus 23 vr~~dIA~~L~Vs~~SVs~mikkL~~~Glv~~~~y~~i~LT~~G~~~A~~i~~r 76 (142) T PRK03902 23 ARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTPKGKKIGKRLVYR 76 (142) T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHCCCCEECCCCCEEECHHHHHHHHHHHHH T ss_conf 129999999789953399999999987992455898756898799999999999 |
|
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional | Back alignment and domain information |
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Probab=93.75 E-value=0.61 Score=26.38 Aligned_cols=68 Identities=15% Similarity=0.239 Sum_probs=52.4 Q ss_pred CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHH--HHHHHHHHHCCCEEEEE--CC----EEEECHHHHHHHHHHHH Q ss_conf 49999899999996562379988899988389964--99999999879949855--98----99995675898999999 Q gi|254780628|r 321 LSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLD--IECERNLQRQGFIERVQ--FS----RLRCTQRGMTMLDSVIA 391 (395) Q Consensus 321 Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~~--~~~~~~L~~~Gli~~~~--~~----~l~lT~~G~~~~d~I~~ 391 (395) T Consensus 38 Lt~~Q~---~vL~~L~~~~~~t~~eLa~~l~id~~tvt~~ldrLe~~GlI~R~~~p~DrR~~~v~LT~~G~~l~~~~~~ 113 (144) T PRK11512 38 ITAAQF---KVLCSIRCAACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTSGAAICEQCHQ 113 (144) T ss_pred CCHHHH---HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEEEEEECHHHHHHHHHHHH T ss_conf 999999---9999999869979999999978888789999999997879663579877624787889779999999999 |
|
>PRK11050 manganese transport regulator MntR; Provisional | Back alignment and domain information |
---|
Probab=93.50 E-value=0.53 Score=26.78 Aligned_cols=60 Identities=17% Similarity=0.175 Sum_probs=44.2 Q ss_pred HHHHHCCC-CCHHHHHHHHCCCHH--HHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHH Q ss_conf 96562379-988899988389964--9999999987994985598999956758989999998 Q gi|254780628|r 333 MGLRLREG-ISVKDWEMLAGRNLD--IECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIAN 392 (395) Q Consensus 333 ~~LR~~~G-id~~~~~~~fg~~~~--~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~ 392 (395) T Consensus 46 ~~L~~~~G~aR~~DIA~~LgVs~pSVt~mlkrL~~~GlV~~~~Y~~I~LT~~G~~~A~~i~~R 108 (155) T PRK11050 46 ADLIAEVGEARQVDIAARLGVSQPTVAKMLKRLARDGLVEMRPYRGVFLTPEGEKLAQESRER 108 (155) T ss_pred HHHHHCCCCEEHHHHHHHHCCCCHHHHHHHHHHHHCCCEEECCCCCEEECHHHHHHHHHHHHH T ss_conf 999982695649999989099933199999999878998871898846897799999999999 |
|
>pfam01090 Ribosomal_S19e Ribosomal protein S19e | Back alignment and domain information |
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Probab=92.98 E-value=0.2 Score=29.60 Aligned_cols=40 Identities=25% Similarity=0.383 Sum_probs=33.0 Q ss_pred HHHHHHHHHHHCCCEEEEE-CCEEEECHHHHHHHHHHHHHHC Q ss_conf 6499999999879949855-9899995675898999999861 Q gi|254780628|r 354 LDIECERNLQRQGFIERVQ-FSRLRCTQRGMTMLDSVIANLA 394 (395) Q Consensus 354 ~~~~~~~~L~~~Gli~~~~-~~~l~lT~~G~~~~d~I~~~l~ 394 (395) T Consensus 96 iiR~~lQqLE~~glvek~~~~GR-~iT~~G~~~LD~iA~~v~ 136 (140) T pfam01090 96 IIRKALQQLEKAGLVEKDPKGGR-RLTPQGRSDLDRIAAEVL 136 (140) T ss_pred HHHHHHHHHHHCCCEEECCCCCC-EECHHHHHHHHHHHHHHH T ss_conf 99999999987888777699993-789868999999999999 |
|
>PRK10870 transcriptional repressor MprA; Provisional | Back alignment and domain information |
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Probab=92.76 E-value=0.86 Score=25.39 Aligned_cols=60 Identities=23% Similarity=0.403 Sum_probs=42.9 Q ss_pred HHHHHCC--CCCHHHHHHHHCCCHH--HHHHHHHHHCCCEEEEE--CC----EEEECHHHHHHHHHHHHH Q ss_conf 9656237--9988899988389964--99999999879949855--98----999956758989999998 Q gi|254780628|r 333 MGLRLRE--GISVKDWEMLAGRNLD--IECERNLQRQGFIERVQ--FS----RLRCTQRGMTMLDSVIAN 392 (395) Q Consensus 333 ~~LR~~~--Gid~~~~~~~fg~~~~--~~~~~~L~~~Gli~~~~--~~----~l~lT~~G~~~~d~I~~~ 392 (395) T Consensus 62 ~~L~~~~~~~l~PseLa~~l~~s~a~iTr~vD~LEkkGlV~R~~s~~DRR~~~V~LT~~G~~ll~~~lP~ 131 (176) T PRK10870 62 ITLESQENHSIQPSELSCALGSSRTNATRIADELEKRGWIERRESDNDRRCLHLQLTEKGHEFLREVLPP 131 (176) T ss_pred HHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECHHHHHHHHHHHHH T ss_conf 9997189998598999999778710199999999988997872371235347889898899999998499 |
|
>smart00529 HTH_DTXR Helix-turn-helix diphteria tox regulatory element | Back alignment and domain information |
---|
Probab=92.57 E-value=0.55 Score=26.70 Aligned_cols=49 Identities=10% Similarity=0.232 Sum_probs=37.0 Q ss_pred HHHHHHHCCCH--HHHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHH Q ss_conf 89998838996--49999999987994985598999956758989999998 Q gi|254780628|r 344 KDWEMLAGRNL--DIECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIAN 392 (395) Q Consensus 344 ~~~~~~fg~~~--~~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~ 392 (395) T Consensus 3 ~diA~~L~vs~~sVs~~l~~L~~~Gli~~~~y~~i~LT~~G~~~A~~i~~r 53 (96) T smart00529 3 SEIAERLNVSPPTVTQMLKKLEKDGLVEYEPYRGITLTEKGRRLARRLLRK 53 (96) T ss_pred HHHHHHHCCCCHHHHHHHHHHHHCCCEEECCCCCEEECHHHHHHHHHHHHH T ss_conf 889988499916799999999988898874998978898799999999999 |
iron dependent repressor |
>PTZ00095 40S ribosomal protein S19; Provisional | Back alignment and domain information |
---|
Probab=91.89 E-value=0.28 Score=28.60 Aligned_cols=40 Identities=18% Similarity=0.301 Sum_probs=31.9 Q ss_pred HHHHHHHHHHHCCCEEEE-E-CCEEEECHHHHHHHHHHHHHHC Q ss_conf 649999999987994985-5-9899995675898999999861 Q gi|254780628|r 354 LDIECERNLQRQGFIERV-Q-FSRLRCTQRGMTMLDSVIANLA 394 (395) Q Consensus 354 ~~~~~~~~L~~~Gli~~~-~-~~~l~lT~~G~~~~d~I~~~l~ 394 (395) T Consensus 121 IiR~~LQqLE~~glVek~~~~~GR-~iT~~G~~~LD~iA~qI~ 162 (169) T PTZ00095 121 ILRWICQQLEKLGLVEQGPKKSGR-RLTRKGCNFANAFARQVT 162 (169) T ss_pred HHHHHHHHHHHCCCEEECCCCCCC-EECHHHHHHHHHHHHHHH T ss_conf 999999999878887646899988-878747899999999999 |
|
>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein | Back alignment and domain information |
---|
Probab=90.95 E-value=1.4 Score=24.08 Aligned_cols=69 Identities=17% Similarity=0.261 Sum_probs=50.7 Q ss_pred CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCH--HHHHHHHHHHCCCEEEEEC--C----EEEECHHHHHHHHHHHHH Q ss_conf 4999989999999656237998889998838996--4999999998799498559--8----999956758989999998 Q gi|254780628|r 321 LSSEQQADEFLMMGLRLREGISVKDWEMLAGRNL--DIECERNLQRQGFIERVQF--S----RLRCTQRGMTMLDSVIAN 392 (395) Q Consensus 321 Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~--~~~~~~~L~~~Gli~~~~~--~----~l~lT~~G~~~~d~I~~~ 392 (395) T Consensus 8 lt~~q~---~vL~~l~~~~~~t~~~la~~l~~~~~~vs~~v~~L~~~glv~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~ 84 (101) T smart00347 8 LTPTQF---LVLRILYEEGPLSVSELAKRLGVSPSTVTRVLDRLEKKGLIRRLPSPEDRRSVLVSLTEEGRELIEELLEA 84 (101) T ss_pred CCHHHH---HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECHHHHHHHHHHHHH T ss_conf 499999---99999997699799999999896887999999999458938982189998858989998999999999999 |
|
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only] | Back alignment and domain information |
---|
Probab=93.07 E-value=0.78 Score=25.67 Aligned_cols=21 Identities=19% Similarity=0.118 Sum_probs=9.7 Q ss_pred HHHHHHHCCCCC-CCCCCHHHH Q ss_conf 655788709624-236743431 Q gi|254780628|r 239 TQSITSAHGLHA-YEISNHSFL 259 (395) Q Consensus 239 a~e~L~~~GY~~-Yeis~fak~ 259 (395) T Consensus 125 alE~l~~~G~ir~IGVSNF~~~ 146 (280) T COG0656 125 ALEELVDEGLIRAIGVSNFGVE 146 (280) T ss_pred HHHHHHHCCCCCEEEEECCCHH T ss_conf 9999996498247977479989 |
|
>COG1964 Predicted Fe-S oxidoreductases [General function prediction only] | Back alignment and domain information |
---|
Probab=92.52 E-value=0.92 Score=25.19 Aligned_cols=102 Identities=20% Similarity=0.260 Sum_probs=60.8 Q ss_pred HHHHHHHHHHC---CCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC--CHHHHHHHHHHCCCC Q ss_conf 99999987618---9505899962888887899999999976640476444332113321041--002347766303454 Q gi|254780628|r 57 TEMQWMRQLTG---PRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSS--VEVNNFQGYRKAGVN 131 (395) Q Consensus 57 ~Ei~~~~~~~~---~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~--~~~~~l~~l~~~Gv~ 131 (395) T Consensus 94 eqi~~Ml~~lk~e~p~~~~aIq~tGGEPTv--r~DL~eiv~~a~e~-g~~---hVqinTnGirlA~~~~~~~~l~~ag~~ 167 (475) T COG1964 94 EQIREMLRNLKKEHPVGANAVQFTGGEPTL--RDDLIEIIKIAREE-GYD---HVQLNTNGIRLAFDPEYVKKLREAGVN 167 (475) T ss_pred HHHHHHHHHHHHCCCCCCCEEEECCCCCCC--HHHHHHHHHHHHHC-CCC---EEEECCCCEEECCCHHHHHHHHHCCCC T ss_conf 999999999985389998326722898664--35589999977656-861---899825750201377899889865885 Q ss_pred CEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCC Q ss_conf 11432343320134554224431347899998630244 Q gi|254780628|r 132 RISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFP 169 (395) Q Consensus 132 RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~ 169 (395) T Consensus 168 tvYl---sFDG~~e~~~~~~--~~eIk~alen~r~~g~ 200 (475) T COG1964 168 TVYL---SFDGVTPKTNWKN--HWEIKQALENCRKAGL 200 (475) T ss_pred EEEE---ECCCCCCCCHHHH--HHHHHHHHHHHHHCCC T ss_conf 7999---4278998621767--7556899998775488 |
|
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase; InterPro: IPR012768 Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase (3 | Back alignment and domain information |
---|
Probab=90.80 E-value=0.26 Score=28.86 Aligned_cols=72 Identities=14% Similarity=0.190 Sum_probs=38.8 Q ss_pred CCCCCCCCCCH--------HHHHHHHHHCCCCCEEE-ECCCCC-------CHHH-HHHHCCC-CCHHHHHHHHHHHCCCC Q ss_conf 11332104100--------23477663034541143-234332-------0134-5542244-31347899998630244 Q gi|254780628|r 108 ITIEANPSSVE--------VNNFQGYRKAGVNRISL-GVQSLE-------EQSL-RFLGRNH-NASEAIAAIHLARNIFP 169 (395) Q Consensus 108 ~t~E~~P~~~~--------~~~l~~l~~~Gv~RiS~-GvQs~~-------~~~l-~~~~R~~-~~~~~~~~~~~~~~~~~ 169 (395) T Consensus 105 ViYELHVGTFTPEGTF~aai~rLpyL~~LGiTaiELMPva~FpG~RgWGYDGVl~yAp~~~YG~Pd~Lk~lvDaAH~~GL 184 (564) T TIGR02402 105 VIYELHVGTFTPEGTFDAAIERLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHEAYGGPDDLKALVDAAHGLGL 184 (564) T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC T ss_conf 68764400207887679998741687750788888734467732666823554445621778781899999999985688 Q ss_pred CCCCCCCCCC Q ss_conf 4333210002 Q gi|254780628|r 170 RMSFDLIYAL 179 (395) Q Consensus 170 ~v~iDli~Gl 179 (395) T Consensus 185 ~V~LDVVYNH 194 (564) T TIGR02402 185 GVLLDVVYNH 194 (564) T ss_pred EEEEEEEEEC T ss_conf 3887466515 |
2.1.141 from EC). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.; GO: 0004553 hydrolase activity hydrolyzing O-glycosyl compounds, 0005992 trehalose biosynthetic process. |
Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
Identity | Alignment graph | Length | Definition | E-value |
Target | 395 | coproporphyrinogen III oxidase [Candidatus Liberibacter | ||
1olt_A | 457 | Coproporphyrinogen Iii Oxidase (Hemn) From Escheric | 1e-48 |
gi|40889237|pdb|1OLT|A Chain A, Coproporphyrinogen Iii Oxidase (Hemn) From Escherichia Coli Is A Radical Sam Enzyme. Length = 457 | Back alignment and structure |
Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats. Identities = 86/405 (21%), Positives = 163/405 (40%), Gaps = 25/405 (6%) Query: 5 SAYENNMTGQGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQ 64 A+ + L +YVH PFC K C +C N V R + + ++ + E+ Sbjct: 39 QAFLQAVARYPERPLSLYVHIPFCHKLCYFCGCNKIVTRQQHKADQYLDALEQEIVHRAP 98 Query: 65 LTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQG 124 L R +S + +GGGTP+ + I+ ++ + +N+ +++ EI+IE +P +E++ Sbjct: 99 LFAGRHVSQLHWGGGTPTYLNKAQISRLMKLLRENFQFNADAEISIEVDPREIELDVLDH 158 Query: 125 YRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFP-RMSFDLIYALPKQT 183 R G NR+S+GVQ ++ R + R + A ++ AR I + DLIY LPKQT Sbjct: 159 LRAEGFNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAREIGFTSTNIDLIYGLPKQT 218 Query: 184 MTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSIT 243 + L+R D LS++ T+F K D LPS +D+ T + Sbjct: 219 PESFAFTLKRVAELNPDRLSVFNYAHLP-TIFAAQRKIKDADLPSPQQKLDILQETIAFL 277 Query: 244 SAHGLHAYEISNHSFLGAE------------SLHNLNYWRYGDYIGIGPGAHSRVKVGSH 291 + G + + + E + D +G+G A S + Sbjct: 278 TQSGYQFIGMDHFARPDDELAVAQREGVLHRNFQGYTTQGDTDLLGMGVSAISMIGDCYA 337 Query: 292 RVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAG 351 + K + + + V + G+A+ L+ + ++ L + E Sbjct: 338 QNQ----KELKQYYQQVDEQGNALWRGIALTRDDCIRRDVIKSLICNFRLDYSPIEQQWD 393 Query: 352 RNLDIEC------ERNLQRQGFIERVQFSRLRCTQRGMTMLDSVI 390 L + G ++ + ++ T +G ++ ++ Sbjct: 394 LLFADYFAEDLKLLAPLAKDGLVDVDEKG-IQVTAKGRLLIRNIC 437 |
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 395 | coproporphyrinogen III oxidase [Candidatus Liberibacter | ||
1olt_A | 457 | Oxygen-independent coproporphyrinogen III oxidase; heme | 5e-75 | |
3iix_A | 348 | Biotin synthetase, putative; adoMet radical, SAM radica | 9e-05 |
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4S cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2 Length = 457 | Back alignment and structure |
---|
Score = 276 bits (707), Expect = 5e-75 Identities = 90/404 (22%), Positives = 168/404 (41%), Gaps = 21/404 (5%) Query: 5 SAYENNMTGQGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQ 64 A+ + L +YVH PFC K C +C N V R + + ++ + E+ Sbjct: 39 QAFLQAVARYPERPLSLYVHIPFCHKLCYFCGCNKIVTRQQHKADQYLDALEQEIVHRAP 98 Query: 65 LTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQG 124 L R +S + +GGGTP+ + I+ ++ + +N+ +++ EI+IE +P +E++ Sbjct: 99 LFAGRHVSQLHWGGGTPTYLNKAQISRLMKLLRENFQFNADAEISIEVDPREIELDVLDH 158 Query: 125 YRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI-FPRMSFDLIYALPKQT 183 R G NR+S+GVQ ++ R + R + A ++ AR I F + DLIY LPKQT Sbjct: 159 LRAEGFNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAREIGFTSTNIDLIYGLPKQT 218 Query: 184 MTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSIT 243 + L+R D LS++ T+F K D LPS +D+ T + Sbjct: 219 PESFAFTLKRVAELNPDRLSVFNYAHL-PTIFAAQRKIKDADLPSPQQKLDILQETIAFL 277 Query: 244 SAHGLHAY----------EISNHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRV 293 + G E++ G + Y GD +G G + +G Sbjct: 278 TQSGYQFIGMDHFARPDDELAVAQREGVLHRNFQGYTTQGDTDLLGMGVSAISMIGDCY- 336 Query: 294 AISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRN 353 +K + + + V + G+A+ L+ + ++ L + E Sbjct: 337 -AQNQKELKQYYQQVDEQGNALWRGIALTRDDCIRRDVIKSLICNFRLDYSPIEQQWDLL 395 Query: 354 L------DIECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIA 391 D++ L + G ++ + ++ T +G ++ ++ Sbjct: 396 FADYFAEDLKLLAPLAKDGLVDVDE-KGIQVTAKGRLLIRNICM 438 |
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A* Length = 348 | Back alignment and structure |
---|
Score = 43.4 bits (101), Expect = 9e-05 Identities = 28/193 (14%), Positives = 56/193 (29%), Gaps = 12/193 (6%) Query: 28 CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQ 87 C K C YC + E+ +L +I G P Sbjct: 63 CRKNCLYCGLRRD-----NKNLKRYRMTPEEIVERARLAVQFGAKTIVLQSGEDPYXMPD 117 Query: 88 NIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRF 147 I+ I+ I K + + ++ +++AG +R L ++ R Sbjct: 118 VISDIVKEIKKMGVAVTL-------SLGEWPREYYEKWKEAGADRYLLRHETANPVLHRK 170 Query: 148 LGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQL 207 L + + + + + + + LP QT+ +L + D + + Sbjct: 171 LRPDTSFENRLNCLLTLKELGYETGAGSMVGLPGQTIDDLVDDLLFLKEHDFDMVGIGPF 230 Query: 208 TIEKGTLFYKMHK 220 T K Sbjct: 231 IPHPDTPLANEKK 243 |
Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 395 | coproporphyrinogen III oxidase [Candidatus Liberibacter | ||
1olt_A | 457 | Oxygen-independent coproporphyrinogen III oxidase; heme | 100.0 | |
3iix_A | 348 | Biotin synthetase, putative; adoMet radical, SAM radica | 99.9 | |
2qgq_A | 304 | Protein TM_1862; alpha-beta protein, structural genomic | 99.88 | |
1r30_A | 369 | Biotin synthase; SAM radical protein, TIM barrel, FES c | 99.63 | |
3c8f_A | 245 | Pyruvate formate-lyase 1-activating enzyme; adoMet radi | 98.98 | |
2yx0_A | 342 | Radical SAM enzyme; predicted tRNA modification enzyme, | 98.67 | |
1tv8_A | 340 | MOAA, molybdenum cofactor biosynthesis protein A; TIM b | 98.59 | |
2z2u_A | 311 | UPF0026 protein MJ0257; metal binding protein; 2.40A {M | 98.44 | |
2a5h_A | 416 | L-lysine 2,3-aminomutase; radical SAM, four-iron-four-s | 98.21 | |
3can_A | 182 | Pyruvate-formate lyase-activating enzyme; structural ge | 97.77 | |
1on2_A | 142 | Transcriptional regulator MNTR; helix-turn-helix, DNA-b | 95.21 | |
2h09_A | 155 | Transcriptional regulator MNTR; transcription regulator | 95.07 | |
2v7f_A | 150 | RPS19, RPS19E SSU ribosomal protein S19E; diamond black | 93.79 | |
2x4h_A | 139 | Hypothetical protein SSO2273; transcription; 2.30A {Sul | 93.73 | |
3b73_A | 111 | PHIH1 repressor-like protein; winged-helix-turn-helix, | 93.22 | |
2fxa_A | 207 | Protease production regulatory protein HPR; protease po | 92.93 | |
3oop_A | 143 | LIN2960 protein; protein structure initiative, PSI-2, s | 92.23 | |
1r7j_A | 95 | Conserved hypothetical protein SSO10A; winged helix-tur | 91.58 | |
3ech_A | 142 | MEXR, multidrug resistance operon repressor; winged hel | 91.32 | |
3g3z_A | 145 | NMB1585, transcriptional regulator, MARR family; transc | 90.98 | |
3cjn_A | 162 | Transcriptional regulator, MARR family; structural geno | 90.91 | |
2fa5_A | 162 | Transcriptional regulator MARR/EMRR family; multiple an | 90.87 | |
3bj6_A | 152 | Transcriptional regulator, MARR family; helix-turn-heli | 90.35 | |
3e6m_A | 161 | MARR family transcriptional regulator; APC88769, silici | 90.11 | |
1qwg_A | 251 | PSL synthase;, (2R)-phospho-3-sulfolactate synthase; be | 91.78 | |
3cta_A | 230 | Riboflavin kinase; structural genomics, transferase, PS | 91.27 |
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4S cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2 | Back alignment and structure |
---|
Probab=100.00 E-value=0 Score=655.22 Aligned_cols=382 Identities=23% Similarity=0.368 Sum_probs=352.6 Q ss_pred HHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCC Q ss_conf 89988428898854999940651183765773024578866288999999999999987618950589996288888789 Q gi|254780628|r 6 AYENNMTGQGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIE 85 (395) Q Consensus 6 ~~~~~~~~~~~~~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~ 85 (395) ++.+.+...+.+|||||||||||+++|+||+|++.+.+.....++|+++|.+||+..+...++.++++|||||||||+|+ T Consensus 40 ~~~~~l~~~~~~plsLYiHIPFC~~~C~yC~~~~~~~~~~~~~~~Yl~~L~~Ei~~~a~~~~~~~v~~i~~GGGTpt~L~ 119 (457) T 1olt_A 40 AFLQAVARYPERPLSLYVHIPFCHKLCYFCGCNKIVTRQQHKADQYLDALEQEIVHRAPLFAGRHVSQLHWGGGTPTYLN 119 (457) T ss_dssp HHHHHHTTCTTSCEEEEEEECEESSCCTTCCSSCEECSCTHHHHHHHHHHHHHHHHHGGGGTTCCEEEEEEEESCGGGSC T ss_pred HHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC T ss_conf 99999850999964999970898988999998245588866199999999999999655638997459998287504489 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHH Q ss_conf 99999999766404764443321133210410023477663034541143234332013455422443134789999863 Q gi|254780628|r 86 PQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLAR 165 (395) Q Consensus 86 ~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~ 165 (395) ++++++|++.+++.|++.+++|+|+|++|.+++.++++.|+++||||+||||||||+++|+++||.|+.+++.++++.++ T Consensus 120 ~~~l~~l~~~l~~~f~~~~~~e~tiE~~P~~~~~~~l~~l~~~G~nRiSlGvQsfd~~vlk~i~R~~~~e~~~~~i~~~r 199 (457) T 1olt_A 120 KAQISRLMKLLRENFQFNADAEISIEVDPREIELDVLDHLRAEGFNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAR 199 (457) T ss_dssp HHHHHHHHHHHHHHSCEEEEEEEEEEECSSSCCTHHHHHHHHTTCCEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHH T ss_conf 99999999999986477877079998259987176799997379987996078697798856214673888999999999 Q ss_pred CC-CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 02-44433321000258543221112788753180012346468825960001454498021103567889998655788 Q gi|254780628|r 166 NI-FPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITS 244 (395) Q Consensus 166 ~~-~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~ 244 (395) ++ +.+||+||||||||||.++|.+||+.+++++||||++|+|.+.|+|. ..+...++..+|++++..+||+.+.+.|. T Consensus 200 ~~g~~~i~~DLI~GlPgqt~e~~~~tl~~~~~l~pd~i~~y~~~~~p~~~-~~q~~~~~~~lp~~~~~~~~~~~a~~~L~ 278 (457) T 1olt_A 200 EIGFTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIF-AAQRKIKDADLPSPQQKLDILQETIAFLT 278 (457) T ss_dssp HTTCCSCEEEEEESCTTCCHHHHHHHHHHHHHHCCSEEEEEECCCCTTTS-GGGGGSCGGGSCCHHHHHHHHHHHHHHHH T ss_pred HHHCCEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECEECCCHH-HHHHCCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 84054372331577998337788889988884089811343110078427-76632222354202799999999999999 Q ss_pred HCCCCCCCCCCHHHHHH----------HHCCCCCCCCC--CCEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCC Q ss_conf 70962423674343101----------10133211244--4123204320011578861578654247025778775389 Q gi|254780628|r 245 AHGLHAYEISNHSFLGA----------ESLHNLNYWRY--GDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNG 312 (395) Q Consensus 245 ~~GY~~Yeis~fak~~~----------~s~hn~~Yw~~--~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i~~~~ 312 (395) ++||.+|++++|+||+. .++|+++||.. .++||||+||+|++++. .++|.+++++|.+++++++ T Consensus 279 ~~GY~~~~~~~fak~~d~l~~a~~~g~l~r~~~~y~~~~~~~~iGlG~sA~S~~~~~----~~~N~~~l~~Y~~~i~~g~ 354 (457) T 1olt_A 279 QSGYQFIGMDHFARPDDELAVAQREGVLHRNFQGYTTQGDTDLLGMGVSAISMIGDC----YAQNQKELKQYYQQVDEQG 354 (457) T ss_dssp HTTCEEEETTEEECTTSHHHHHHHHTCCEECSSCEESCCSCEEEEESTTCEEEETTE----EEEECSSHHHHHHHHHHHS T ss_pred HCCHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCEEECCCE----EEEECCCHHHHHHHHHHCC T ss_conf 778354212331278725567876374432313411268830750477662103880----0474056799999998479 Q ss_pred CCCCCEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHH------HHHHHHHCCCEEEEECCEEEECHHHHHHH Q ss_conf 633322454999989999999656237998889998838996499------99999987994985598999956758989 Q gi|254780628|r 313 HAVVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLDIE------CERNLQRQGFIERVQFSRLRCTQRGMTML 386 (395) Q Consensus 313 ~p~~~~~~Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~~~~------~~~~L~~~Gli~~~~~~~l~lT~~G~~~~ 386 (395) +|+.++..+|.+|++++++|++||+..|||.+.|+++||.++... .+++|+++||++ .+++++++|++|++|+ T Consensus 355 ~~~~~g~~ls~~d~~r~~ii~~L~~~~~ld~~~~~~~fg~~~~~~f~~~~~~L~~l~~~GLv~-~~~~~i~lT~~Gr~l~ 433 (457) T 1olt_A 355 NALWRGIALTRDDCIRRDVIKSLICNFRLDYSPIEQQWDLLFADYFAEDLKLLAPLAKDGLVD-VDEKGIQVTAKGRLLI 433 (457) T ss_dssp CCEEEEEECCHHHHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHTHHHHHHHHHHHHTTSEE-ECSSEEEECTTTGGGH T ss_pred CCHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEE-EECCEEEECHHHHHHH T ss_conf 952403468988999999999899838928799999979788898799999999999789899-9899999998489999 Q ss_pred HHHHHHH Q ss_conf 9999986 Q gi|254780628|r 387 DSVIANL 393 (395) Q Consensus 387 d~I~~~l 393 (395) |+|+..| T Consensus 434 ~~I~~~F 440 (457) T 1olt_A 434 RNICMCF 440 (457) T ss_dssp HHHHHTT T ss_pred HHHHHHH T ss_conf 9999999 |
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A* | Back alignment and structure |
---|
Probab=99.90 E-value=2e-23 Score=173.94 Aligned_cols=211 Identities=15% Similarity=0.193 Sum_probs=160.2 Q ss_pred CEEEEEECCC---CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHH Q ss_conf 5499994065---1183765773024578866288999999999999987618950589996288888789999999997 Q gi|254780628|r 18 SLGVYVHWPF---CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILD 94 (395) Q Consensus 18 ~l~lYihiPF---C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~ 94 (395) .+.++.+|.+ |+..|.||.|........... .-.+.+.++++...+. + +..+++.||.+.....+.+..+++ T Consensus 50 ~v~~~~~I~~Sn~C~~~C~fC~~~~~~~~~~~~~-ls~eeI~~~~~~~~~~-G---~~~i~l~~g~~~~~~~~~~~~~i~ 124 (348) T 3iix_A 50 EVHIRAIIEFSNVCRKNCLYCGLRRDNKNLKRYR-MTPEEIVERARLAVQF-G---AKTIVLQSGEDPYXMPDVISDIVK 124 (348) T ss_dssp EEEEEEEEEEECCCSCCCTTCTTCTTCCSSCCCB-CCHHHHHHHHHHHHHT-T---CSEEEEEESCCGGGTTHHHHHHHH T ss_pred EEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHHC-C---CCEEEEECCCCCCCCHHHHHHHHH T ss_conf 8899998886588899891499883699976615-8999999999999981-9---928998258887664899999987 Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCC Q ss_conf 66404764443321133210410023477663034541143234332013455422443134789999863024443332 Q gi|254780628|r 95 GIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFD 174 (395) Q Consensus 95 ~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iD 174 (395) .+++.+. .++ .+...++++.++.|+++|++++.+|+||+++.+++.+.+.++.++..++++.+++++..++++ T Consensus 125 ~i~~~~~-----~i~--~~~g~~~~e~l~~L~~aG~~~~~~~~et~~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~ 197 (348) T 3iix_A 125 EIKKMGV-----AVT--LSLGEWPREYYEKWKEAGADRYLLRHETANPVLHRKLRPDTSFENRLNCLLTLKELGYETGAG 197 (348) T ss_dssp HHHTTSC-----EEE--EECCCCCHHHHHHHHHHTCCEEECCCBCSCHHHHHHHSTTSCHHHHHHHHHHHHHTTCEEEEC T ss_pred HCCCCCE-----EEE--ECCCCCHHHHHHHHHHHCCCEEEECHHHCCHHHEEECCCCCCCCHHHHHHHHHHHCCCEEEEE T ss_conf 4033321-----232--024543089999999828967985634434021220114777312467766776249727888 Q ss_pred CCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC Q ss_conf 100025854322111278875318001234646882596000145449802110356788999865578870 Q gi|254780628|r 175 LIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAH 246 (395) Q Consensus 175 li~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~ 246 (395) +|+|+||||.|++.+++..+.+++++.+.++++.+.|||++++. ..++.....++...++=+|... T Consensus 198 ~i~GlpgEt~ed~~~~l~~lr~l~~~~~~~~~f~P~pgTpl~~~------~~~~~~~~l~~ia~~Rl~lp~~ 263 (348) T 3iix_A 198 SMVGLPGQTIDDLVDDLLFLKEHDFDMVGIGPFIPHPDTPLANE------KKGDFTLTLKMVALTRILLPDS 263 (348) T ss_dssp BEESCTTCCHHHHHHHHHHHHHHTCSEECCEECCCCTTSTTTTS------CCCCHHHHHHHHHHHHHHSTTS T ss_pred EEEECCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCC------CCCCHHHHHHHHHHHHHHCCCC T ss_conf 99945999999999999999727998898986675199976568------9959999999999999968987 |
>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8} | Back alignment and structure |
---|
Probab=99.88 E-value=3.7e-22 Score=165.47 Aligned_cols=185 Identities=19% Similarity=0.284 Sum_probs=135.8 Q ss_pred CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCC----HHHHHHHHHHHHHCCCCC Q ss_conf 1183765773024578866288999999999999987618950589996288888789----999999997664047644 Q gi|254780628|r 28 CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIE----PQNIALILDGIAKNWTVS 103 (395) Q Consensus 28 C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~----~~~l~~ll~~i~~~~~~~ 103 (395) |+.+|+||..+....+ .+.+.++.+++|++.+.+. +...+ +++|..+-+.-. ...+..|+..+.+.... T Consensus 14 C~~~CsFC~ip~~rG~---~rsr~~e~Ii~Ei~~l~~~-G~kei--~l~~~d~~~~~~~~~~~~~~~~L~~~~~~~~~~- 86 (304) T 2qgq_A 14 CDRGCTFCSIPSFKGS---LRSRSIEDITREVEDLLKE-GKKEI--ILVAQDTTSYGIDLYRKQALPDLLRRLNSLNGE- 86 (304) T ss_dssp C-------------CC---CCBCCHHHHHHHHHHHHHT-TCCEE--EEECTTGGGTTHHHHSSCCHHHHHHHHHTSSSS- T ss_pred CCCCCEECEEEEEECC---EEEECHHHHHHHHHHHHHC-CCEEE--EEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCC- T ss_conf 8998775556201498---3771999999999999986-99099--998564665554244511489999987236883- Q ss_pred CCCCCC-CCCCCCCCHHHHHHHHHHC--CCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCC--CCCCCCCC Q ss_conf 433211-3321041002347766303--454114323433201345542244313478999986302444--33321000 Q gi|254780628|r 104 SNVEIT-IEANPSSVEVNNFQGYRKA--GVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPR--MSFDLIYA 178 (395) Q Consensus 104 ~~~e~t-~E~~P~~~~~~~l~~l~~~--Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~--v~iDli~G 178 (395) ..+. ...+|..++++.+..+.+. ++..+.+|+||+||++|+.|+|.++.+++.++++.+++..+. +..|+|+| T Consensus 87 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~igieSgs~~vLk~m~r~~t~e~~~~~v~~ir~~~p~~~i~t~fIvG 164 (304) T 2qgq_A 87 --FWIRVMYLHPDHLTEEIISAMLELDKVVKYFDVPVQHGSDKILKLMGRTKSSEELKKMLSSIRERFPDAVLRTSIIVG 164 (304) T ss_dssp --CEEEECCCCGGGCCHHHHHHHHHCTTBCCEEECCCBCSCHHHHHHTTCCSCHHHHHHHHHHHHHHCTTCEEEEEEEEC T ss_pred --EEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEE T ss_conf --589940358436778877767644846467740643278799987504764555445887676648995576357567 Q ss_pred CCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHC Q ss_conf 2585432211127887531800123464688259600014544 Q gi|254780628|r 179 LPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKD 221 (395) Q Consensus 179 lPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~ 221 (395) +||+|.+++.++++.+.+++++++.++++++.|||+++....+ T Consensus 165 fPgET~edf~~T~~fl~~~~~d~~~i~~~sp~pGT~a~~~~~~ 207 (304) T 2qgq_A 165 FPGETEEDFEELKQFVEEIQFDKLGAFVYSDEEGTVAFNLKEK 207 (304) T ss_dssp CTTCCHHHHHHHHHHHHHHCCSEEEEEECCC-----------C T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHCCCC T ss_conf 8987689999999999856978330024256699766663678 |
>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1 | Back alignment and structure |
---|
Probab=99.63 E-value=2.7e-15 Score=120.06 Aligned_cols=200 Identities=11% Similarity=0.079 Sum_probs=143.3 Q ss_pred CCCCCCCCCCCEEEECCC--CCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCC-CCCHHHHHHHHHHHHHCCCCC Q ss_conf 511837657730245788--66288999999999999987618950589996288888-789999999997664047644 Q gi|254780628|r 27 FCVKKCPYCDFNSHVRRY--KVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPS-LIEPQNIALILDGIAKNWTVS 103 (395) Q Consensus 27 FC~~~C~yC~f~~~~~~~--~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs-~l~~~~l~~ll~~i~~~~~~~ 103 (395) .|+..|.||.|....... .... .-.+.+.++++..... +... ....||+.|. -...+.+.++++.+++.+. T Consensus 75 ~C~~~C~FCafs~~~~~~~~~~~l-~s~eeI~e~a~~~~~~-G~~~--i~l~~g~~~~~~~~~~~~~~~i~~i~~~~~-- 148 (369) T 1r30_A 75 ACPEDCKYCPQSSRYKTGLEAERL-MEVEQVLESARKAKAA-GSTR--FCMGAAWKNPHERDMPYLEQMVQGVKAMGL-- 148 (369) T ss_dssp CBSSCCSSCSCBTTSCTTCCCCCC-CCHHHHHHHHHHHHHT-TCSE--EEEEECCSSCCTTTHHHHHHHHHHHHHTTS-- T ss_pred CCCCCCCCCCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHHC-CCEE--EEEEECCCCCCCCHHHHHHHHHHHHHHCCC-- T ss_conf 999889229973418999875466-8879999999989875-9979--999957888870279999999998520475-- Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC Q ss_conf 43321133210410023477663034541143234332013455422443134789999863024443332100025854 Q gi|254780628|r 104 SNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQT 183 (395) Q Consensus 104 ~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt 183 (395) .+-+++..++.+.+..|+++|++++.+++++ +++....+.+.++.++..++++.+++++..++.-+|+|+ |+| T Consensus 149 -----~i~~~~~~l~~e~l~~Lk~aG~~~~~~~lEt-~~~~~~~~~~~~~~~~rl~~l~~a~~~Gi~~~~g~i~G~-gEt 221 (369) T 1r30_A 149 -----EACMTLGTLSESQAQRLANAGLDYYNHNLDT-SPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGL-GET 221 (369) T ss_dssp -----EEEEECSSCCHHHHHHHHHHCCCEEECCCBS-CHHHHHHHCCSSCHHHHHHHHHHHHHHHCEEECCEEECS-SCC T ss_pred -----EEEEECCCCCHHHHHHHHHHCCCEECCCHHH-HHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECC-CCC T ss_conf -----4765126798999999985187888343424-555421343458799999999999982897358889788-999 Q ss_pred CCCCCCCHHHHHHCCC--CCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 3221112788753180--0123464688259600014544980211035678899986557887 Q gi|254780628|r 184 MTQWEMELQRALSYAV--DHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSA 245 (395) Q Consensus 184 ~e~~~~~l~~~~~l~p--~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~ 245 (395) .+++.+.+..+.++++ +.+.+.++.+.|||++... ..++.++..++...++=+|-+ T Consensus 222 ~ed~i~~l~~Lr~L~~~~~~v~~~~f~P~~gT~l~~~------~~~~~~e~lr~iAi~Rl~lP~ 279 (369) T 1r30_A 222 VKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADN------DDVDAFDFIRTIAVARIMMPT 279 (369) T ss_dssp HHHHHHHHHHHHSSSSCCSEEEEEECCCCTTSTTSSC------CCCCHHHHHHHHHHHHHHCTT T ss_pred HHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCC------CCCCHHHHHHHHHHHHHHCCC T ss_conf 9999999999986689986655500466899976667------899999999999999997788 |
>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A* | Back alignment and structure |
---|
Probab=98.98 E-value=1.5e-09 Score=81.96 Aligned_cols=213 Identities=9% Similarity=0.090 Sum_probs=121.4 Q ss_pred EEEEEECCCCCCCCCCCC-CEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHH Q ss_conf 499994065118376577-3024578866288999999999999987618950589996288888789999999997664 Q gi|254780628|r 19 LGVYVHWPFCVKKCPYCD-FNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIA 97 (395) Q Consensus 19 l~lYihiPFC~~~C~yC~-f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~ 97 (395) +.+|+. =|..+|.||. ..+........ ...+.+..|+....... ......|.|.||=|++ .++.+.++++.++ T Consensus 22 ~~vf~~--GCN~~C~~C~n~~~~~~~~~~~--~~~~e~~~ei~~~~~~~-~~~~~~v~~sGGEP~l-~~~~l~~l~~~~k 95 (245) T 3c8f_A 22 FITFFQ--GCLMRCLYCHNRDTWDTHGGKE--VTVEDLMKEVVTYRHFM-NASGGGVTASGGEAIL-QAEFVRDWFRACK 95 (245) T ss_dssp EEEEES--CCSCCCTTCSCGGGCCTTCSEE--ECHHHHHHHHGGGHHHH-TSTTCEEEEEESCGGG-GHHHHHHHHHHHH T ss_pred EEEECC--CCCCCCCCCCCHHHHCCCCCCC--CCHHHHHHHHHHHHHHH-CCCCCEEECCCCCCCC-CHHHHHHHHHHHH T ss_conf 999878--7478898999713418679918--89999999999999975-2578758535556534-6999999999888 Q ss_pred HCCCCCCCCCCCCCCCCCCCH-HHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCC--CCC Q ss_conf 047644433211332104100-23477663034541143234332013455422443134789999863024443--332 Q gi|254780628|r 98 KNWTVSSNVEITIEANPSSVE-VNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRM--SFD 174 (395) Q Consensus 98 ~~~~~~~~~e~t~E~~P~~~~-~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v--~iD 174 (395) +. ++ .++++++=-... ++.+..+.. +++.+++++.+.+++..+.+. +.+.+.+.+.++.+++.+..+ ++- T Consensus 96 ~~-g~----~~~l~TnG~~~~~~~~~~~l~~-~~d~v~id~~~~~~~~~~~~~-g~~~~~vl~~l~~l~~~g~~v~i~~~ 168 (245) T 3c8f_A 96 KE-GI----HTCLDTNGFVRRYDPVIDELLE-VTDLVMLDLKQMNDEIHQNLV-GVSNHRTLEFAKYLANKNVKVWIRYV 168 (245) T ss_dssp TT-TC----CEEEEECCCCCCCCHHHHHHHH-TCSEEEEECCCSSHHHHHHHH-SSCSHHHHHHHHHHHHHTCCEEEEEE T ss_pred HH-CC----CEEEECCCCCCCCHHHHHHHHC-CCCEEEEECCCCCHHHHHHHH-CCCCHHHHHHHHHHHHCCCCEEEEEE T ss_conf 64-38----4799778865553456666523-575799843546788999873-86508999999999978998999999 Q ss_pred CCCCCCCCCCCCCCCCHHHHHHCCC-CCEEEEEEEEEC---CCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 1000258543221112788753180-012346468825---96000145449802110356788999865578870962 Q gi|254780628|r 175 LIYALPKQTMTQWEMELQRALSYAV-DHLSLYQLTIEK---GTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLH 249 (395) Q Consensus 175 li~GlPgqt~e~~~~~l~~~~~l~p-~~is~Y~l~i~~---~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~ 249 (395) +|-|+.. +.|.+.+-.+.+.++++ +.+.+-|+.... ...+...+...+...|+.++. +.+.+.+++.|.. T Consensus 169 ~i~g~~d-~~e~i~~i~~~i~~l~~~~~v~l~py~~~g~~k~~~~~~~y~~~~~~~p~~e~l----~~~~~~~~~~G~~ 242 (245) T 3c8f_A 169 VVPGWSD-DDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETM----ERVKGILEQYGHK 242 (245) T ss_dssp ECTTTTC-CHHHHHHHHHHHHHHCCEEEEEEEECCCCSHHHHHHTTCCCTTTTCCCCCHHHH----HHHHHHHHTTTCC T ss_pred EECCCCC-CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHCCCCCCCCCCCCCCHHHH----HHHHHHHHHCCCE T ss_conf 9899489-999999999999857997558884476166411665185454457899999999----9999999985990 |
>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii} | Back alignment and structure |
---|
Probab=98.67 E-value=1.1e-06 Score=62.90 Aligned_cols=194 Identities=11% Similarity=0.075 Sum_probs=109.9 Q ss_pred HHHHHCCCCC-CCEEEEEECCCCCCCCCCCCCE--EEECC----CCCCHHHHHHHHHHHHHHHHHHHCCC---------- Q ss_conf 9988428898-8549999406511837657730--24578----86628899999999999998761895---------- Q gi|254780628|r 7 YENNMTGQGS-NSLGVYVHWPFCVKKCPYCDFN--SHVRR----YKVGQENFIQSFLTEMQWMRQLTGPR---------- 69 (395) Q Consensus 7 ~~~~~~~~~~-~~l~lYihiPFC~~~C~yC~f~--~~~~~----~~~~~~~y~~~l~~Ei~~~~~~~~~~---------- 69 (395) |+..+=|..| +-+..---+.+|..+|.||-.. ..... .-...+.-++.+.++.+.....+.+. T Consensus 59 yk~~fygi~sh~c~q~tPsl~~CNlrCvfC~r~~~~~~~~~~~~~~d~pe~Ivee~i~~~~~~i~~~~g~~~~~~e~~~E 138 (342) T 2yx0_A 59 YKQKFYGIHSHRCLQMTPVLAWCTHNCIFCWRPMENFLGTELPQPWDDPAFIVEESIKAQRKLLIGYKGNPKVDKKKFEE 138 (342) T ss_dssp HHHHHHCCCGGGEEEEESCSSCCSBCCTTCCCSSSSCSCSSCCSSCCCHHHHHHHHHHHHHHHHTTCC--CCSCHHHHHH T ss_pred CCEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH T ss_conf 31433063320458743041520258988899877777766544447989999999999999887642676302566665 Q ss_pred --EE-EEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHH Q ss_conf --05-899962888887899999999976640476444332113321041002347766303454114323433201345 Q gi|254780628|r 70 --SI-SSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLR 146 (395) Q Consensus 70 --~~-~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~ 146 (395) .+ ...+.|||=|++.+ ++.++++.+++. ++ .+.+-+|....+..........+++.|++-+.+.+++..+ T Consensus 139 a~~~~hvais~~GEPll~p--~l~eli~~~~~~-gi----~~~l~TNGtl~~~~~~l~~~~~~~~~l~vSLDa~~~e~~~ 211 (342) T 2yx0_A 139 AWNPTHAAISLSGEPMLYP--YMGDLVEEFHKR-GF----TTFIVTNGTIPERLEEMIKEDKLPTQLYVSITAPDIETYN 211 (342) T ss_dssp HTSCCEEEECSSSCGGGST--THHHHHHHHHHT-TC----EEEEEECSCCHHHHHHHHHTTCCCSEEEEEECCSSHHHHH T ss_pred HCCCCEEEEECCCCCCCCH--HHHHHHHHHHHC-CC----EEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHH T ss_conf 2487679995787753455--599999999863-96----4999658866117999998747886799835789989999 Q ss_pred HHHCCC---CCHHHHHHHHHHHCCCCCC--CCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEE Q ss_conf 542244---3134789999863024443--332100025854322111278875318001234646882 Q gi|254780628|r 147 FLGRNH---NASEAIAAIHLARNIFPRM--SFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIE 210 (395) Q Consensus 147 ~~~R~~---~~~~~~~~~~~~~~~~~~v--~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~ 210 (395) .+.|+. ..+.+.+.++.+++.+..+ ++-+ .+|...++..+=.+.+-..+|+.|.+-+++.. T Consensus 212 ki~r~~~~~~~ervl~~L~~L~~~g~~~vir~tl---v~g~N~~ei~~~a~li~~~~pdfie~k~y~~~ 277 (342) T 2yx0_A 212 SVNIPMIPDGWERILRFLELMRDLPTRTVVRLTL---VKGENMHSPEKYAKLILKARPMFVEAKAYMFV 277 (342) T ss_dssp HHHCBSSSCHHHHHHHHHHHHTTCSSEEEEEEEE---CTTTTCCCHHHHHHHHHHHCCSEEEEEECC-- T ss_pred HHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEE---ECCCCHHHHHHHHHHHHHCCCCEEEEEEEEEE T ss_conf 8737667677999999999999669988999999---68987666999999998659998999603870 |
>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A* | Back alignment and structure |
---|
Probab=98.59 E-value=5.6e-08 Score=71.56 Aligned_cols=182 Identities=13% Similarity=0.168 Sum_probs=115.7 Q ss_pred CCCCCCCE-EEEEEC-CCCCCCCCCCCCEEEECC-------C-CCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCC Q ss_conf 28898854-999940-651183765773024578-------8-6628899999999999998761895058999628888 Q gi|254780628|r 12 TGQGSNSL-GVYVHW-PFCVKKCPYCDFNSHVRR-------Y-KVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTP 81 (395) Q Consensus 12 ~~~~~~~l-~lYihi-PFC~~~C~yC~f~~~~~~-------~-~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTP 81 (395) ...-.|++ .|-|.| --|.-+|.||........ . ....+ -+..+++++. + .+ +..|.|.||=| T Consensus 6 ~d~~~R~~~~lri~IT~rCNL~C~~C~~~~~~~~~~~~~~~~~~Ls~e-ei~~ii~~~~---~-~g---v~~i~ltGGEP 77 (340) T 1tv8_A 6 KDKLGRPIRDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFD-EMARIAKVYA---E-LG---VKKIRITGGEP 77 (340) T ss_dssp BCTTSCBCCEEEEECCSCCSCCCTTTSCTTTSSTTCCCCCGGGSCCHH-HHHHHHHHHH---H-TT---CCEEEEESSCG T ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH-HHHHHHHHHH---H-CC---CEEEEECCCCH T ss_conf 327899038579971552178896889640067777767610348999-9999999998---7-69---80999638862 Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHH-HCCCCCHHHHHH Q ss_conf 8789999999997664047644433211332104100234776630345411432343320134554-224431347899 Q gi|254780628|r 82 SLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFL-GRNHNASEAIAA 160 (395) Q Consensus 82 s~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~-~R~~~~~~~~~~ 160 (395) ++- ++ +.+++..+++.-. ..+.+=++=..++++.+..|++.|+++|++-+.+.+++.-+.+ |+....+.+.++ T Consensus 78 llr-~d-~~~~i~~~~~~~~----~~~~~~Tng~ll~~~~~~~L~~~gl~~v~ISld~~~~e~~~~i~g~~g~~~~~~~~ 151 (340) T 1tv8_A 78 LMR-RD-LDVLIAKLNQIDG----IEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQ 151 (340) T ss_dssp GGS-TT-HHHHHHHHTTCTT----CCEEEEEECSTTHHHHHHHHHHHTCCEEEEECCCSSHHHHHHHHSSCCCHHHHHHH T ss_pred HCC-HH-HHHHHHHHHHCCC----CCEEECCCCCCCCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHCCCCCHHHHHH T ss_conf 007-00-6999987521022----10242107865342138999984998885046776588887765105650000379 Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEE Q ss_conf 9986302444333210002585432211127887531800123464688 Q gi|254780628|r 161 IHLARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTI 209 (395) Q Consensus 161 ~~~~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i 209 (395) ++.+++++..+.+-. +=+++...+.+..-++.+.+.+.+ +.+..++. T Consensus 152 i~~~~~~g~~v~in~-vv~~~~N~~~i~~~~~~a~~~~~~-~~~~~~~~ 198 (340) T 1tv8_A 152 IDYATSIGLNVKVNV-VIQKGINDDQIIPMLEYFKDKHIE-IRFIEFMD 198 (340) T ss_dssp HHHHHHTTCEEEEEE-EECTTTTGGGHHHHHHHHHHTTCC-EEEEECCC T ss_pred HHHHHHCCCCEEEEE-EECCCCCHHHHHHHHHHHHHCCCC-EEEEEEEE T ss_conf 999998799879998-974886256689999999847981-99999984 |
>2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii} | Back alignment and structure |
---|
Probab=98.44 E-value=7.7e-06 Score=57.38 Aligned_cols=176 Identities=10% Similarity=0.058 Sum_probs=104.2 Q ss_pred EEEEEECCCCCCCCCCCCCE------EEECC----CCCCHHHHHHHHHHHHHHHHHHHCC-------------CEEE-EE Q ss_conf 49999406511837657730------24578----8662889999999999999876189-------------5058-99 Q gi|254780628|r 19 LGVYVHWPFCVKKCPYCDFN------SHVRR----YKVGQENFIQSFLTEMQWMRQLTGP-------------RSIS-SI 74 (395) Q Consensus 19 l~lYihiPFC~~~C~yC~f~------~~~~~----~~~~~~~y~~~l~~Ei~~~~~~~~~-------------~~~~-~i 74 (395) +-+.=-++.|..+|.||-.. ..... .-...+.-++...++.+.+-.-+.+ ..+. .. T Consensus 53 ~~~tPs~~~CN~rC~fC~r~~~~~~~~~~~~~~~~~~d~pe~Ive~~i~~~~kli~~~~g~~~~v~~e~~~ea~~~~~ia 132 (311) T 2z2u_A 53 IQCTPSVIWCQQNCIFCWRVLPRDIGIDISQIKEPKWEEPEVVYEKILAMHKRIIMGYAGVLDRVGEKKFKEALEPKHVA 132 (311) T ss_dssp EEEESCSSCCSCC----------------CCSCCCCCCCHHHHHHHHHHHHHHHHHGGGGGHHHHCHHHHHHHTSCCEEE T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEE T ss_conf 65335730020879477698878777773101344548999999999999999976532677540156666523763798 Q ss_pred EECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCC-- Q ss_conf 962888887899999999976640476444332113321041002347766303454114323433201345542244-- Q gi|254780628|r 75 FFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNH-- 152 (395) Q Consensus 75 y~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~-- 152 (395) +.+||=|++-+ ++.++++.+++. ++. +.+-+|.. .++.++++|.+++.+-+.+.|++..+.+.|+. T Consensus 133 is~~GEP~l~p--~l~eli~~~~~~-gi~----~~l~TNG~-----~~d~l~~l~~~~l~vSlDa~~~e~~~~i~r~~~~ 200 (311) T 2z2u_A 133 ISLSGEPTLYP--YLDELIKIFHKN-GFT----TFVVSNGI-----LTDVIEKIEPTQLYISLDAYDLDSYRRICGGKKE 200 (311) T ss_dssp ECSSSCGGGST--THHHHHHHHHHT-TCE----EEEEECSC-----CHHHHHHCCCSEEEEECCCSSTTTC----CCCHH T ss_pred ECCCCCCCHHH--HHHHHHHHHHHC-CCE----EEEEECCC-----CHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCC T ss_conf 62688730478--999999999875-972----77541543-----4478987055158863047999999998675623 Q ss_pred CCHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEE Q ss_conf 313478999986302444-3332100025854322111278875318001234646882 Q gi|254780628|r 153 NASEAIAAIHLARNIFPR-MSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIE 210 (395) Q Consensus 153 ~~~~~~~~~~~~~~~~~~-v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~ 210 (395) ..+.+.+.++.+++.+.. +++-+|-|.- ++...-.+.+...+|+.|.+.+++.. T Consensus 201 ~~e~vl~~l~~l~~~~~~vir~tlv~g~N----ddi~~~a~l~~~~~~~fIEvk~~~~~ 255 (311) T 2z2u_A 201 YWESILNTLDILKEKKRTCIRTTLIRGYN----DDILKFVELYERADVHFIELKSYMHV 255 (311) T ss_dssp HHHHHHHHHHHHTTSSSEEEEEEECTTTT----CCGGGTHHHHHHHTCSEEEEEECC-- T ss_pred HHHHHHHHHHHHHHCCCEEEEEEEECCCC----CCHHHHHHHHHHCCCCEEEEECEEEC T ss_conf 79999999999986698799998436776----48999999997539988999640851 |
>2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, S-adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale} | Back alignment and structure |
---|
Probab=98.21 E-value=6.6e-06 Score=57.81 Aligned_cols=172 Identities=11% Similarity=0.155 Sum_probs=97.7 Q ss_pred EEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHH-CCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHC Q ss_conf 9994065118376577302457886628899999999999998761-895058999628888878999999999766404 Q gi|254780628|r 21 VYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLT-GPRSISSIFFGGGTPSLIEPQNIALILDGIAKN 99 (395) Q Consensus 21 lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~-~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~ 99 (395) |-.--+-|..+|.||--.-.......... ..|++....++ ....++-|-+-||-|.+++.+.|..+++.+++. T Consensus 118 ll~vT~~Cn~~CrYC~R~~~~~~~~~~l~------~~ei~~~i~yi~~~~~I~~V~lTGGePL~r~d~~L~~li~~l~~i 191 (416) T 2a5h_A 118 LLLITDMCSMYCRHCTRRRFAGQSDDSMP------MERIDKAIDYIRNTPQVRDVLLSGGDALLVSDETLEYIIAKLREI 191 (416) T ss_dssp EEEEESCCSSCCTTCTTTTTTTSSSSBCC------HHHHHHHHHHHHTCTTCCEEEEEESCTTSSCHHHHHHHHHHHHTS T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCC------HHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHC T ss_conf 99845754772879898775686434346------899999999998489826999978973437889999999999847 Q ss_pred CCCCCCCCCCCCC-----CCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCC--C Q ss_conf 7644433211332-----10410023477663034541143234332013455422443134789999863024443--3 Q gi|254780628|r 100 WTVSSNVEITIEA-----NPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRM--S 172 (395) Q Consensus 100 ~~~~~~~e~t~E~-----~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v--~ 172 (395) -++. .+.+-+ .|..++. .|+++|.+++.+-+.+.+.+ +.--...+.++++.++++|..| | T Consensus 192 ~~i~---~iri~T~~~~~~p~r~~~----~L~~~g~~~~nisldth~~h------~~el~~~v~~~i~~l~~~Gi~vk~n 258 (416) T 2a5h_A 192 PHVE---IVRIGSRTPVVLPQRITP----ELVNMLKKYHPVWLNTHFNH------PNEITEESTRACQLLADAGVPLGNQ 258 (416) T ss_dssp TTCC---EEEEECSHHHHCGGGCCH----HHHHHHGGGCSEEEEECCCS------GGGCCHHHHHHHHHHHHTTCCEEEE T ss_pred CCCC---EEEEECCCCCCCCHHHHH----HHHHHHHCCCEEEEEEECCC------CCCCCHHHHHHHHHHHHCCCEEEEE T ss_conf 9986---478880675447277799----99987742763899974277------1005599999999999769948730 Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECC Q ss_conf 3210002585432211127887531800123464688259 Q gi|254780628|r 173 FDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKG 212 (395) Q Consensus 173 iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~ 212 (395) .=+|-|.= .+.+.+..-.+.+.++++.-..++.+....| T Consensus 259 ~VllkGvN-Dd~~~l~~L~~~l~~~gv~pyyi~~~d~~~g 297 (416) T 2a5h_A 259 SVLLRGVN-DCVHVMKELVNKLVKIRVRPYYIYQCDLSLG 297 (416) T ss_dssp EECCTTTT-CSHHHHHHHHHHHHHTTEEEEEEECCCCBTT T ss_pred CEEECCCC-CCHHHHHHHHHHHHHCCCEEEEEEECCCCCC T ss_conf 40567743-8889999999999867976999983478874 |
>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, PSI, MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
---|
Probab=97.77 E-value=0.00042 Score=45.87 Aligned_cols=162 Identities=12% Similarity=0.115 Sum_probs=100.4 Q ss_pred EEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCC Q ss_conf 99628888878999999999766404764443321133210410023477663034541143234332013455422443 Q gi|254780628|r 74 IFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHN 153 (395) Q Consensus 74 iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~ 153 (395) |=|-||=|++- ++.|.++++.+++. ++ .+++.+|= ++..+.+..+.+. ++++.+.+.+.|++.-+.+.+ .+ T Consensus 7 Vt~sGGEP~l~-~~~l~ei~~~~k~~-g~----~~~l~TNG-~l~~e~~~~~~~~-~d~~~~sl~~~~~e~~~~i~g-~~ 77 (182) T 3can_A 7 VTFCGGEPLLH-PEFLIDILKRCGQQ-GI----HRAVDTTL-LARKETVDEVMRN-CELLLIDLKSMDSTVHQTFCD-VP 77 (182) T ss_dssp EEECSSTGGGS-HHHHHHHHHHHHHT-TC----CEEEECTT-CCCHHHHHHHHHT-CSEEEEECCCSCHHHHHHHHS-SC T ss_pred EEEEECCHHCC-HHHHHHHHHHHHHC-CC----CEEEECCC-CCCHHHHHHHHHH-HHHEECCCCCCCHHHHHHHHC-CC T ss_conf 89983035098-87999999999887-99----19998177-5248999985432-232541423368999998849-98 Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCCCC--CCCCCCCCHHHHHHCCC--CCEEEEEEEEECC---CEEHHHHH--CCCC Q ss_conf 13478999986302444333210002585--43221112788753180--0123464688259---60001454--4980 Q gi|254780628|r 154 ASEAIAAIHLARNIFPRMSFDLIYALPKQ--TMTQWEMELQRALSYAV--DHLSLYQLTIEKG---TLFYKMHK--DGDL 224 (395) Q Consensus 154 ~~~~~~~~~~~~~~~~~v~iDli~GlPgq--t~e~~~~~l~~~~~l~p--~~is~Y~l~i~~~---t~l~~~~~--~~~~ 224 (395) .+.+.+.++.+++.+..+.+-.+. +|+. +.+++.+-.+.+.+++. ..|.+.++..... ..+.+.+. .... T Consensus 78 ~~~v~~~i~~l~~~~~~v~~~~~v-i~~~~~~~~~i~~l~~~i~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~ 156 (182) T 3can_A 78 NELILKNIRRVAEADFPYYIRIPL-IEGVNADEKNIKLSAEFLASLPRHPEIINLLPYHDIGKGKHAKLGSIYNPKGYKM 156 (182) T ss_dssp SHHHHHHHHHHHHTTCCEEEEEEE-CBTTTCSHHHHHHHHHHHHHSSSCCSEEEEEECCC------------------CC T ss_pred HHHHHHHHHHHHHCCCCEEEEEEE-ECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCCC T ss_conf 899998899999719850578988-7886599999999999998569981389987676455236887086355557878 Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 2110356788999865578870962 Q gi|254780628|r 225 VLPSENVAVDLYNLTQSITSAHGLH 249 (395) Q Consensus 225 ~~p~~~~~~~~~~~a~e~L~~~GY~ 249 (395) ..|++++ ...+.+.+++.|+. T Consensus 157 ~~p~~e~----~~~~~~~~~~~G~~ 177 (182) T 3can_A 157 QTPSEEV----QQQCIQILTDYGLK 177 (182) T ss_dssp BCCCHHH----HHHHHHHHHHTTCC T ss_pred CCCCHHH----HHHHHHHHHHCCCE T ss_conf 9999999----99999999975990 |
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D | Back alignment and structure |
---|
Probab=95.21 E-value=0.17 Score=28.56 Aligned_cols=54 Identities=11% Similarity=0.134 Sum_probs=42.7 Q ss_pred CCCCHHHHHHHHCCCHH--HHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHH Q ss_conf 79988899988389964--9999999987994985598999956758989999998 Q gi|254780628|r 339 EGISVKDWEMLAGRNLD--IECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIAN 392 (395) Q Consensus 339 ~Gid~~~~~~~fg~~~~--~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~ 392 (395) ..+...++.+..|.+.. ...++.|.+.|+|.....+.+.||++|+..+..|+++ T Consensus 21 ~~v~~~dlA~~L~vs~~sv~~~lk~L~~~GlI~~~~~~~i~LT~~G~~~A~~l~rr 76 (142) T 1on2_A 21 GYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGKRLVYR 76 (142) T ss_dssp SSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCEEECHHHHHHHHHHHHH T ss_conf 98869999999698878999999999857984406998667778899999999999 |
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli} | Back alignment and structure |
---|
Probab=95.07 E-value=0.19 Score=28.28 Aligned_cols=55 Identities=15% Similarity=0.132 Sum_probs=45.4 Q ss_pred CCCCCHHHHHHHHCCCHHH--HHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHH Q ss_conf 3799888999883899649--999999987994985598999956758989999998 Q gi|254780628|r 338 REGISVKDWEMLAGRNLDI--ECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIAN 392 (395) Q Consensus 338 ~~Gid~~~~~~~fg~~~~~--~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~ 392 (395) ...+...++.+..|.+... ..++.|.++|+|.....+.+.||++|+..+..|+.+ T Consensus 52 ~~~vr~~dIA~~L~vs~~sVs~~l~~L~~~GlI~~~~~~~i~LT~~G~~~A~~i~rr 108 (155) T 2h09_A 52 VGEARQVDMAARLGVSQPTVAKMLKRLATMGLIEMIPWRGVFLTAEGEKLAQESRER 108 (155) T ss_dssp HSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEETTTEEEECHHHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCEEECHHHHHHHHHHHHH T ss_conf 897709999999698978999999999778898754998755898599999999999 |
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84 | Back alignment and structure |
---|
Probab=93.79 E-value=0.34 Score=26.64 Aligned_cols=39 Identities=26% Similarity=0.408 Sum_probs=31.6 Q ss_pred HHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHHHC Q ss_conf 999999998799498559899995675898999999861 Q gi|254780628|r 356 IECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIANLA 394 (395) Q Consensus 356 ~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~l~ 394 (395) ...+++|++.|+++...++.=++|++|+-++|.|+.+++ T Consensus 99 R~~LQqLE~~g~v~k~~~~GR~lT~~Gq~~LD~iA~~v~ 137 (150) T 2v7f_A 99 RKALQQLEAAGFVEKVPGKGRVITPKGRSFLDKIATELK 137 (150) T ss_dssp HHHHHHHHHTTSEEEETTTEEEECHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCEEECCCCCCEECHHHHHHHHHHHHHHH T ss_conf 999999986888777799983789888999999999999 |
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
---|
Probab=93.73 E-value=0.37 Score=26.36 Aligned_cols=53 Identities=15% Similarity=0.224 Sum_probs=42.8 Q ss_pred CCCCHHHHHHHHCCCHH--HHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHHHHH Q ss_conf 79988899988389964--9999999987994985598999956758989999998 Q gi|254780628|r 339 EGISVKDWEMLAGRNLD--IECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIAN 392 (395) Q Consensus 339 ~Gid~~~~~~~fg~~~~--~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I~~~ 392 (395) .++...++.+..+.+.. ...++.|.++|||.. +...+.||++|+..+..++++ T Consensus 30 ~~v~~~~iA~~L~vs~~svt~~l~~L~~~Glv~~-~~~gi~LT~~G~~~A~~i~rr 84 (139) T 2x4h_A 30 EGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVKK-KEDGVWITNNGTRSINYLIKA 84 (139) T ss_dssp SCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE-ETTEEEECHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCEEE-ECCCCEECHHHHHHHHHHHHH T ss_conf 9866999999968890799999999998899545-047715788899999999999 |
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049} | Back alignment and structure |
---|
Probab=93.22 E-value=0.22 Score=27.83 Aligned_cols=64 Identities=13% Similarity=0.132 Sum_probs=46.7 Q ss_pred ECCH-HHHHHHHHHHHHHHCCCCCHHHHHHHHCCCH----HHHHHHHHHHCCCEEEEECCEEEECHHHHHHHH Q ss_conf 5499-9989999999656237998889998838996----499999999879949855989999567589899 Q gi|254780628|r 320 FLSS-EQQADEFLMMGLRLREGISVKDWEMLAGRNL----DIECERNLQRQGFIERVQFSRLRCTQRGMTMLD 387 (395) Q Consensus 320 ~Ls~-~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~----~~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d 387 (395) ++++ ++++.++ |+-...+....+.+..|++. ....++.|.+.|||+....+.+.+|++|+.+++ T Consensus 10 WM~~~D~rILE~----L~e~g~~t~~eIA~~lgi~~S~~~Vs~rl~~L~~~GLve~~g~G~Y~iT~~G~~yL~ 78 (111) T 3b73_A 10 WMTIWDDRILEI----IHEEGNGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQPLANGVYVITEEGEAYLN 78 (111) T ss_dssp TCCHHHHHHHHH----HHHHSCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEECSTTCEEECHHHHHHHT T ss_pred CCCCCHHHHHHH----HHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEECCCCCEEECHHHHHHHH T ss_conf 246019999999----998499999999998688847999999999998787956668700798966899998 |
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, structural genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28 | Back alignment and structure |
---|
Probab=92.93 E-value=0.47 Score=25.68 Aligned_cols=58 Identities=12% Similarity=0.210 Sum_probs=26.6 Q ss_pred HHHHCCCCCHHHHHHHHCCCHH--HHHHHHHHHCCCEEEEECC------EEEECHHHHHHHHHHHH Q ss_conf 6562379988899988389964--9999999987994985598------99995675898999999 Q gi|254780628|r 334 GLRLREGISVKDWEMLAGRNLD--IECERNLQRQGFIERVQFS------RLRCTQRGMTMLDSVIA 391 (395) Q Consensus 334 ~LR~~~Gid~~~~~~~fg~~~~--~~~~~~L~~~Gli~~~~~~------~l~lT~~G~~~~d~I~~ 391 (395) -|....|++..++.+..+.+-. ...++.|++.|||.+..+. .+.||++|+.+++.+.. T Consensus 56 ~L~~~~~~s~~ela~~~~~~~stvs~~i~~Le~~gli~r~~~~~D~R~~~i~LT~~G~~l~~~~~~ 121 (207) T 2fxa_A 56 IAYQLNGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVFWSLLE 121 (207) T ss_dssp HHHHHTSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHHHHHHH T ss_pred HHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCEEEEEEECHHHHHHHHHHHH T ss_conf 999769949999999988698799999999996899887238988756898889889999999999 |
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua} | Back alignment and structure |
---|
Probab=92.23 E-value=0.61 Score=24.96 Aligned_cols=70 Identities=20% Similarity=0.168 Sum_probs=53.2 Q ss_pred ECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHH--HHHHHHHHHCCCEEEEECC------EEEECHHHHHHHHHHHH Q ss_conf 549999899999996562379988899988389964--9999999987994985598------99995675898999999 Q gi|254780628|r 320 FLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLD--IECERNLQRQGFIERVQFS------RLRCTQRGMTMLDSVIA 391 (395) Q Consensus 320 ~Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~~--~~~~~~L~~~Gli~~~~~~------~l~lT~~G~~~~d~I~~ 391 (395) -+|..+. .++..|....|+..+++.+..+.+-. ....+.|++.|||++..+. .+.+|++|+.+.+.+.. T Consensus 34 glt~~q~---~iL~~l~~~~~~t~~~La~~l~i~~~~vs~~i~~L~~~g~v~r~~~~~D~R~~~l~LT~~G~~~~~~~~~ 110 (143) T 3oop_A 34 DVTPEQW---SVLEGIEANEPISQKEIALWTKKDTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKETTELRD 110 (143) T ss_dssp SSCHHHH---HHHHHHHHHSSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHHHHHHH T ss_pred CCCHHHH---HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHHHHH T ss_conf 9999999---9999998689979999999989699799999999975677434105899894476889899999999999 Q ss_pred H Q ss_conf 8 Q gi|254780628|r 392 N 392 (395) Q Consensus 392 ~ 392 (395) . T Consensus 111 ~ 111 (143) T 3oop_A 111 I 111 (143) T ss_dssp H T ss_pred H T ss_conf 9 |
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled coil, structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A | Back alignment and structure |
---|
Probab=91.58 E-value=0.71 Score=24.48 Aligned_cols=51 Identities=14% Similarity=0.124 Sum_probs=39.1 Q ss_pred CCCCCHHHHHHHHCCCHH--HHHHHHHHHCCCEEEEECCEEEECHHHHHHHHHH Q ss_conf 379988899988389964--9999999987994985598999956758989999 Q gi|254780628|r 338 REGISVKDWEMLAGRNLD--IECERNLQRQGFIERVQFSRLRCTQRGMTMLDSV 389 (395) Q Consensus 338 ~~Gid~~~~~~~fg~~~~--~~~~~~L~~~Gli~~~~~~~l~lT~~G~~~~d~I 389 (395) ..|.....+....+.+.. ...++.|++.|+|+. +++.+.+|++|..+++.+ T Consensus 18 ~~~~~~T~i~~~~nLs~~~~~~yl~~L~~~GLI~~-~~~~y~lTekG~~~L~~l 70 (95) T 1r7j_A 18 KSGSPKTRIMYGANLSYALTGRYIKMLMDLEIIRQ-EGKQYMLTKKGEELLEDI 70 (95) T ss_dssp TTCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE-ETTEEEECHHHHHHHHHH T ss_pred HCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCEEE-CCCEEEECCCHHHHHHHH T ss_conf 66997759999819999999999999998889241-798469882389999999 |
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} PDB: 1lnw_A 3mex_A | Back alignment and structure |
---|
Probab=91.32 E-value=0.76 Score=24.31 Aligned_cols=70 Identities=14% Similarity=0.149 Sum_probs=50.5 Q ss_pred ECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCH--HHHHHHHHHHCCCEEEEE--CCE----EEECHHHHHHHHHHHH Q ss_conf 54999989999999656237998889998838996--499999999879949855--989----9995675898999999 Q gi|254780628|r 320 FLSSEQQADEFLMMGLRLREGISVKDWEMLAGRNL--DIECERNLQRQGFIERVQ--FSR----LRCTQRGMTMLDSVIA 391 (395) Q Consensus 320 ~Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~--~~~~~~~L~~~Gli~~~~--~~~----l~lT~~G~~~~d~I~~ 391 (395) -+|..+. .++.-|.-..|++..++.+..|.+- ....++.|++.|+|++.. +|+ +.+|++|+...+.+.. T Consensus 34 ~lt~~q~---~iL~~l~~~~~~t~~~La~~l~i~~~~vsr~l~~L~~~g~v~r~~~~~D~R~~~l~lT~~G~~~~~~~~~ 110 (142) T 3ech_A 34 DLTPPDV---HVLKLIDEQRGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHLHAEL 110 (142) T ss_dssp CCCHHHH---HHHHHHHHTTTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC----------CCEECHHHHHHHHHHHH T ss_pred CCCHHHH---HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEECCCCCCCEEEEEECHHHHHHHHHHHH T ss_conf 9799999---9999999779989999999989698799999999998798535037888874565788889999999999 Q ss_pred H Q ss_conf 8 Q gi|254780628|r 392 N 392 (395) Q Consensus 392 ~ 392 (395) . T Consensus 111 ~ 111 (142) T 3ech_A 111 I 111 (142) T ss_dssp H T ss_pred H T ss_conf 9 |
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structural genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B} | Back alignment and structure |
---|
Probab=90.98 E-value=0.82 Score=24.10 Aligned_cols=69 Identities=16% Similarity=0.049 Sum_probs=51.8 Q ss_pred CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCH--HHHHHHHHHHCCCEEEEECC------EEEECHHHHHHHHHHHHH Q ss_conf 4999989999999656237998889998838996--49999999987994985598------999956758989999998 Q gi|254780628|r 321 LSSEQQADEFLMMGLRLREGISVKDWEMLAGRNL--DIECERNLQRQGFIERVQFS------RLRCTQRGMTMLDSVIAN 392 (395) Q Consensus 321 Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~--~~~~~~~L~~~Gli~~~~~~------~l~lT~~G~~~~d~I~~~ 392 (395) +|..+. .++..|....+++..++.+..+.+- .....+.|+++|||++..+. .+.||++|+.+.+.+... T Consensus 29 ls~~~~---~iL~~l~~~~~~t~~~la~~l~~~~~~vs~~i~~L~~~glv~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~ 105 (145) T 3g3z_A 29 LNYNLF---AVLYTLATEGSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYAAPLTES 105 (145) T ss_dssp CCHHHH---HHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHHHHHHHH T ss_pred CCHHHH---HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHHHHHH T ss_conf 899999---99999998799499999999896988999999999857987985768887746878898799999999999 |
>3cjn_A Transcriptional regulator, MARR family; structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
---|
Probab=90.91 E-value=0.83 Score=24.06 Aligned_cols=69 Identities=19% Similarity=0.252 Sum_probs=51.9 Q ss_pred CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHH--HHHHHHHHHCCCEEEEEC--C----EEEECHHHHHHHHHHHHH Q ss_conf 49999899999996562379988899988389964--999999998799498559--8----999956758989999998 Q gi|254780628|r 321 LSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLD--IECERNLQRQGFIERVQF--S----RLRCTQRGMTMLDSVIAN 392 (395) Q Consensus 321 Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~~--~~~~~~L~~~Gli~~~~~--~----~l~lT~~G~~~~d~I~~~ 392 (395) ||..+. .++..|....|+..+.+.+..+.+-. ...++.|+++|||.+..+ | ++.+|++|+.+...+... T Consensus 50 Lt~~q~---~iL~~l~~~~~~t~~~La~~~~~~~~~vsr~v~~L~~~glI~r~~~~~D~R~~~l~lT~~G~~~~~~~~~~ 126 (162) T 3cjn_A 50 LSTAKM---RALAILSAKDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVYDRLWPH 126 (162) T ss_dssp CCHHHH---HHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHHHHHHHH T ss_pred CCHHHH---HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHHHHHH T ss_conf 599999---99999984799899999999897988999999999868966885226888866767898899999999999 |
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris} | Back alignment and structure |
---|
Probab=90.87 E-value=0.84 Score=24.03 Aligned_cols=69 Identities=17% Similarity=0.169 Sum_probs=50.0 Q ss_pred CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHH--HHHHHHHHHCCCEEEEEC--C----EEEECHHHHHHHHHHHHH Q ss_conf 49999899999996562379988899988389964--999999998799498559--8----999956758989999998 Q gi|254780628|r 321 LSSEQQADEFLMMGLRLREGISVKDWEMLAGRNLD--IECERNLQRQGFIERVQF--S----RLRCTQRGMTMLDSVIAN 392 (395) Q Consensus 321 Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~~--~~~~~~L~~~Gli~~~~~--~----~l~lT~~G~~~~d~I~~~ 392 (395) +|..+. .++..|.-..|+...++.+..+.+-. ...++.|++.|||++..+ | .+.||++|+.+.+.+... T Consensus 47 lt~~q~---~iL~~l~~~~~~t~~~La~~l~i~~~~vs~~v~~L~~~glv~r~~~~~DrR~~~i~LT~~G~~~~~~~~~~ 123 (162) T 2fa5_A 47 MAIPEW---RVITILALYPGSSASEVSDRTAMDKVAVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVYETVAPL 123 (162) T ss_dssp CCHHHH---HHHHHHHHSTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC---------CCCEECHHHHHHHHHHHHH T ss_pred CCHHHH---HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEEEEEECHHHHHHHHHHHHH T ss_conf 799999---99999986799899999999787871599999999857987304578988856657898899999999999 |
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, structural genomics, PSI-2; 2.01A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
---|
Probab=90.35 E-value=0.93 Score=23.74 Aligned_cols=69 Identities=23% Similarity=0.306 Sum_probs=50.7 Q ss_pred CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCH--HHHHHHHHHHCCCEEEEEC--C----EEEECHHHHHHHHHHHHH Q ss_conf 4999989999999656237998889998838996--4999999998799498559--8----999956758989999998 Q gi|254780628|r 321 LSSEQQADEFLMMGLRLREGISVKDWEMLAGRNL--DIECERNLQRQGFIERVQF--S----RLRCTQRGMTMLDSVIAN 392 (395) Q Consensus 321 Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~--~~~~~~~L~~~Gli~~~~~--~----~l~lT~~G~~~~d~I~~~ 392 (395) +|..+. .++..|....|+....+.+..+.+- ....++.|++.|||++..+ | .+.||++|+.+.+.+... T Consensus 38 lt~~q~---~vL~~l~~~~~~t~~~La~~l~~~~~~is~~l~~L~~~gli~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~ 114 (152) T 3bj6_A 38 VTVGQR---AILEGLSLTPGATAPQLGAALQMKRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAIITAIRAD 114 (152) T ss_dssp CCHHHH---HHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHHHHHHHH T ss_pred CCHHHH---HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH T ss_conf 799999---99999998799899999999896987999999999988997742499889845342589899999999999 |
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi} | Back alignment and structure |
---|
Probab=90.11 E-value=0.97 Score=23.61 Aligned_cols=69 Identities=16% Similarity=0.152 Sum_probs=49.6 Q ss_pred CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCH--HHHHHHHHHHCCCEEEEECC------EEEECHHHHHHHHHHHHH Q ss_conf 4999989999999656237998889998838996--49999999987994985598------999956758989999998 Q gi|254780628|r 321 LSSEQQADEFLMMGLRLREGISVKDWEMLAGRNL--DIECERNLQRQGFIERVQFS------RLRCTQRGMTMLDSVIAN 392 (395) Q Consensus 321 Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~~~--~~~~~~~L~~~Gli~~~~~~------~l~lT~~G~~~~d~I~~~ 392 (395) ||..+. .++..|....++...++.+..+.+- ....++.|+++|||++..+. .+.||++|..++..+... T Consensus 51 Lt~~q~---~vL~~l~~~~~~t~~~la~~l~i~~~~vs~~i~~L~~~glv~r~~~~~D~R~~~l~LT~~G~~~~~~~~~~ 127 (161) T 3e6m_A 51 LPTPKL---RLLSSLSAYGELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLAEISPL 127 (161) T ss_dssp CCHHHH---HHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHHHHHHHH T ss_pred CCHHHH---HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEECCCCHHHHHHHHHHHHH T ss_conf 799999---99999997799899999999897887999999999838977983258998731101688899999999999 |
>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1 | Back alignment and structure |
---|
Probab=91.78 E-value=0.46 Score=25.76 Aligned_cols=121 Identities=15% Similarity=0.090 Sum_probs=72.5 Q ss_pred CCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCC-----CCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCC Q ss_conf 9505899962888887899999999976640476444-----33211332104100234776630345411432343320 Q gi|254780628|r 68 PRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSS-----NVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEE 142 (395) Q Consensus 68 ~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~-----~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~ 142 (395) +.-++-+-||+||-.+++.+.|.+-++..+++ ++.. ..|+.+ .. ..-++.++..++.||+.|.+---|.+ T Consensus 36 g~yID~~K~g~GTs~l~~~~~L~eKI~l~~~~-~V~v~~GGtlfE~a~--~q-~~~~~y~~~~~~lGf~~IEiSdG~i~- 110 (251) T 1qwg_A 36 GDYIDFVKFGWGTSAVIDRDVVKEKINYYKDW-GIKVYPGGTLFEYAY--SK-GKFDEFLNECEKLGFEAVEISDGSSD- 110 (251) T ss_dssp GGGCSEEEECTTGGGGSCHHHHHHHHHHHHTT-TCEEEECHHHHHHHH--HT-TCHHHHHHHHHHHTCCEEEECCSSSC- T ss_pred HHHEEEEEECCCEEEECCHHHHHHHHHHHHHC-CCEEECCCHHHHHHH--HC-CCHHHHHHHHHHCCCCEEEECCCCCC- T ss_conf 54435898557565005889999999999986-982757957999999--74-96899999999859988997398446- Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC----CCCCCCCCCCHHHHHHCCCCCE Q ss_conf 13455422443134789999863024443332100025----8543221112788753180012 Q gi|254780628|r 143 QSLRFLGRNHNASEAIAAIHLARNIFPRMSFDLIYALP----KQTMTQWEMELQRALSYAVDHL 202 (395) Q Consensus 143 ~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlP----gqt~e~~~~~l~~~~~l~p~~i 202 (395) -+.++-.+.++.+++.++.|=-..-.-.| -.+.+.|.+.++.-++.+++.| T Consensus 111 ---------i~~~~~~~~I~~a~~~G~~V~~EvG~K~~~~~~~~~~~~~i~~~~~~LeaGA~~V 165 (251) T 1qwg_A 111 ---------ISLEERNNAIKRAKDNGFMVLTEVGKKMPDKDKQLTIDDRIKLINFDLDAGADYV 165 (251) T ss_dssp ---------CCHHHHHHHHHHHHHTTCEEEEEECCSSHHHHTTCCHHHHHHHHHHHHHHTCSEE T ss_pred ---------CCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEE T ss_conf ---------8989999999999858998950545788886666699999999999996688178 |
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2 | Back alignment and structure |
---|
Probab=91.27 E-value=0.53 Score=25.35 Aligned_cols=11 Identities=18% Similarity=0.362 Sum_probs=4.5 Q ss_pred CCHHHHHHHHH Q ss_conf 89999999997 Q gi|254780628|r 84 IEPQNIALILD 94 (395) Q Consensus 84 l~~~~l~~ll~ 94 (395) ++..+|++.+. T Consensus 28 ls~~eLa~~l~ 38 (230) T 3cta_A 28 LTSSKLADMLG 38 (230) T ss_dssp CCHHHHHHHHT T ss_pred CCHHHHHHHHC T ss_conf 58999999988 |
Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | E-value |
395 | coproporphyrinogen III oxidase [Candidatus Liberibacter | |||
d1olta_ | 441 | c.1.28.2 (A:) Oxygen-independent coproporphyrinogen III | 1e-54 |
>d1olta_ c.1.28.2 (A:) Oxygen-independent coproporphyrinogen III oxidase HemN {Escherichia coli [TaxId: 562]} Length = 441 | Back information, alignment and structure |
---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Radical SAM enzymes family: Oxygen-independent coproporphyrinogen III oxidase HemN domain: Oxygen-independent coproporphyrinogen III oxidase HemN species: Escherichia coli [TaxId: 562] Score = 207 bits (527), Expect = 1e-54 Identities = 82/406 (20%), Positives = 163/406 (40%), Gaps = 25/406 (6%) Query: 5 SAYENNMTGQGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQ 64 A+ + L +YVH PFC K C +C N V R + + ++ + E+ Sbjct: 36 QAFLQAVARYPERPLSLYVHIPFCHKLCYFCGCNKIVTRQQHKADQYLDALEQEIVHRAP 95 Query: 65 LTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQG 124 L R +S + +GGGTP+ + I+ ++ + +N+ +++ EI+IE +P +E++ Sbjct: 96 LFAGRHVSQLHWGGGTPTYLNKAQISRLMKLLRENFQFNADAEISIEVDPREIELDVLDH 155 Query: 125 YRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRM-SFDLIYALPKQT 183 R G NR+S+GVQ ++ R + R + A ++ AR I + DLIY LPKQT Sbjct: 156 LRAEGFNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAREIGFTSTNIDLIYGLPKQT 215 Query: 184 MTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSIT 243 + L+R D LS++ + D LPS +D+ T + Sbjct: 216 PESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIK-DADLPSPQQKLDILQETIAFL 274 Query: 244 SAHGLHAYEISNHSFLGAE------------SLHNLNYWRYGDYIGIGPGAHSRVKVGSH 291 + G + + + E + D +G+G A S + Sbjct: 275 TQSGYQFIGMDHFARPDDELAVAQREGVLHRNFQGYTTQGDTDLLGMGVSAISMIGDCYA 334 Query: 292 RVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAG 351 + ++++ + + G+A+ L+ + ++ L + E Sbjct: 335 QNQKELKQYYQQVD----EQGNALWRGIALTRDDCIRRDVIKSLICNFRLDYSPIEQQWD 390 Query: 352 RNL------DIECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIA 391 D++ L + G ++ + ++ T +G ++ ++ Sbjct: 391 LLFADYFAEDLKLLAPLAKDGLVDVDE-KGIQVTAKGRLLIRNICM 435 |
Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | Probability |
Target | 395 | coproporphyrinogen III oxidase [Candidatus Liberibacter | ||
d1olta_ | 441 | Oxygen-independent coproporphyrinogen III oxidase HemN | 100.0 | |
d1r30a_ | 312 | Biotin synthase {Escherichia coli [TaxId: 562]} | 99.71 | |
d1tv8a_ | 327 | Molybdenum cofactor biosynthesis protein A MoaA {Staphy | 98.17 | |
d1r7ja_ | 90 | Sso10a (SSO10449) {Archaeon Sulfolobus solfataricus [Ta | 94.17 | |
d2v7fa1 | 149 | Ribosomal protein S19e {Pyrococcus abyssi [TaxId: 29292 | 93.77 | |
d3ctaa1 | 85 | Ta1064 (RFK), N-terminal domain {Thermoplasma acidophil | 91.79 | |
d2a61a1 | 139 | Transcriptional regulator TM0710 {Thermotoga maritima [ | 90.14 | |
d1qwga_ | 251 | (2r)-phospho-3-sulfolactate synthase ComA {Archaeon Met | 91.2 |
>d1olta_ c.1.28.2 (A:) Oxygen-independent coproporphyrinogen III oxidase HemN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Radical SAM enzymes family: Oxygen-independent coproporphyrinogen III oxidase HemN domain: Oxygen-independent coproporphyrinogen III oxidase HemN species: Escherichia coli [TaxId: 562] Probab=100.00 E-value=0 Score=667.93 Aligned_cols=382 Identities=23% Similarity=0.375 Sum_probs=351.2 Q ss_pred HHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCC Q ss_conf 89988428898854999940651183765773024578866288999999999999987618950589996288888789 Q gi|254780628|r 6 AYENNMTGQGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIE 85 (395) Q Consensus 6 ~~~~~~~~~~~~~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~ 85 (395) ++.+.+...+.+|||||||||||+++|+||+|++.+.+.....++|+++|++||+..++..++.++.+|||||||||+|+ T Consensus 37 ~~~~~l~~~~~~plsLYiHiPFC~~~C~yC~~~~~~~~~~~~~~~Y~~~L~~Ei~~~~~~~~~~~v~~i~~GGGTPt~L~ 116 (441) T d1olta_ 37 AFLQAVARYPERPLSLYVHIPFCHKLCYFCGCNKIVTRQQHKADQYLDALEQEIVHRAPLFAGRHVSQLHWGGGTPTYLN 116 (441) T ss_dssp HHHHHHTTCTTSCEEEEEEECEESSCCTTCCSSCEECSCTHHHHHHHHHHHHHHHHHGGGGTTCCEEEEEEEESCGGGSC T ss_pred HHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCC T ss_conf 99999961899962899972897888998958365488855099999999999999667617985030386188847789 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHH Q ss_conf |