254780680
seryl-tRNA synthetase
GeneID in NCBI database: | 8209684 | Locus tag: | CLIBASIA_02835 |
Protein GI in NCBI database: | 254780680 | Protein Accession: | YP_003065093.1 |
Gene range: | -(587054, 588346) | Protein Length: | 430aa |
Gene description: | seryl-tRNA synthetase | ||
COG prediction: | [J] Seryl-tRNA synthetase | ||
KEGG prediction: | serS; seryl-tRNA synthetase (EC:6.1.1.11); K01875 seryl-tRNA synthetase [EC:6.1.1.11] | ||
SEED prediction: | Seryl-tRNA synthetase (EC 6.1.1.11) | ||
Pathway involved in KEGG: | Aminoacyl-tRNA biosynthesis [PATH:las00970] | ||
Subsystem involved in SEED: | Glycine and Serine Utilization;
tRNA aminoacylation, Ser | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
Identity | Alignment graph | Length | Definition | E-value | |
Target | 430 | seryl-tRNA synthetase [Candidatus Liberibacter asiaticu | |||
254780870 | 449 | prolyl-tRNA synthetase [Candidatus Liberibacter as | 0.005 |
>gi|254780870|ref|YP_003065283.1| prolyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 449 | Back alignment |
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Score = 33.9 bits (76), Expect = 0.005, Method: Compositional matrix adjust. Identities = 34/143 (23%), Positives = 58/143 (40%), Gaps = 9/143 (6%) Query: 191 GYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTD--GRWLI--PTSEVSLTNLYSHEIIE 246 G E+S P L + +G+ + +M D + +I PT E +T+++ I Sbjct: 65 GAIEMSVPTLQSADLWVESGRYDSYGKEMLRLADRNDKAMIYGPTHEEVMTDIFRSHIKS 124 Query: 247 SKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSIT-REEDSFTEHERMLSC 305 ++LP F + FR E R G++R +F + S E S + +M Sbjct: 125 YRNLPFTFYQIQLKFRDEL----RPRFGVMRSREFLMKDAYSFDLTPEGSKHSYNKMFVS 180 Query: 306 AEEILKRLDLHYRVVSLCTGDLG 328 I RL L + +G +G Sbjct: 181 YLRIFHRLGLKSIPMRAESGPIG 203 |
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 430 | seryl-tRNA synthetase [Candidatus Liberibacter asiaticu | |||
315122209 | 432 | seryl-tRNA synthetase [Candidatus Liberibacter solanace | 1 | 0.0 | |
159184878 | 427 | seryl-tRNA synthetase [Agrobacterium tumefaciens str. C | 1 | 1e-172 | |
325293088 | 427 | Seryl-tRNA synthetase [Agrobacterium sp. H13-3] Length | 1 | 1e-172 | |
222148967 | 427 | seryl-tRNA synthetase [Agrobacterium vitis S4] Length = | 1 | 1e-172 | |
241204418 | 427 | seryl-tRNA synthetase [Rhizobium leguminosarum bv. trif | 1 | 1e-170 | |
116251809 | 427 | seryl-tRNA synthetase [Rhizobium leguminosarum bv. vici | 1 | 1e-169 | |
86357454 | 427 | seryl-tRNA synthetase [Rhizobium etli CFN 42] Length = | 1 | 1e-167 | |
327189128 | 427 | seryl-tRNA synthetase [Rhizobium etli CNPAF512] Length | 1 | 1e-167 | |
190891515 | 427 | seryl-tRNA synthetase [Rhizobium etli CIAT 652] Length | 1 | 1e-166 | |
222085788 | 427 | seryl-tRNA synthetase (serine-tRNA ligase) protein [Agr | 1 | 1e-166 |
>gi|315122209|ref|YP_004062698.1| seryl-tRNA synthetase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 432 | Back alignment and organism information |
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Score = 728 bits (1879), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/425 (80%), Positives = 385/425 (90%) Query: 1 MLDIQWIRQNPEHLDIALKKRHLEPQSEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQ 60 MLDIQWIRQNP+ DIALKKR+LEPQSE ILSLD + R LI++IE IRA+RNS S QIGQ Sbjct: 1 MLDIQWIRQNPDTFDIALKKRNLEPQSECILSLDTQYRSLIRQIEKIRAQRNSKSEQIGQ 60 Query: 61 AIAEGNLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTSAN 120 AIA+GNL L D +K E ST+KEQLP+LE +E+E+ SSL +++SCIPN+PLE+VPIG + Sbjct: 61 AIAKGNLLLADTIKAEVSTIKEQLPLLEAKENEIKSSLNQILSCIPNIPLEDVPIGANEK 120 Query: 121 ENILIRSVGKKPSAIHLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQ 180 ENILIRSVG KP+AIHLS+EHFEIGE LGLMDFDR+ KLSGARFS+L HLA LERALGQ Sbjct: 121 ENILIRSVGNKPNAIHLSKEHFEIGEELGLMDFDRSAKLSGARFSILASHLALLERALGQ 180 Query: 181 FMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGRWLIPTSEVSLTNLY 240 FM+DLHTSEHGYTEVSAPLLVRDEAMYGTGQ+PKFA+DMFCTTDGRWLIPTSEVSLTN++ Sbjct: 181 FMLDLHTSEHGYTEVSAPLLVRDEAMYGTGQLPKFANDMFCTTDGRWLIPTSEVSLTNIF 240 Query: 241 SHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHE 300 S+EII+ LPLR LAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSIT+EE+S EHE Sbjct: 241 SNEIIDFNLLPLRLVALAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITKEEESHIEHE 300 Query: 301 RMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQ 360 RMLSCAE++LK+LDLHYR+VSLC+GDLGFSACKTYDLEVWL GQNLYREISSCS CG+FQ Sbjct: 301 RMLSCAEKVLKKLDLHYRIVSLCSGDLGFSACKTYDLEVWLPGQNLYREISSCSNCGSFQ 360 Query: 361 SRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYMNNL 420 SRRMNSRYRD +KSLKFTHTLNGSGVAVGRCLIAILENYLN DGSVTIPT+LRPYM+NL Sbjct: 361 SRRMNSRYRDSFNKSLKFTHTLNGSGVAVGRCLIAILENYLNKDGSVTIPTILRPYMHNL 420 Query: 421 AVIKK 425 VIKK Sbjct: 421 EVIKK 425 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|159184878|ref|NP_354691.2| seryl-tRNA synthetase [Agrobacterium tumefaciens str. C58] Length = 427 | Back alignment and organism information |
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Score = 608 bits (1569), Expect = e-172, Method: Compositional matrix adjust. Identities = 277/425 (65%), Positives = 344/425 (80%) Query: 1 MLDIQWIRQNPEHLDIALKKRHLEPQSEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQ 60 M DI+WIR+NPE D AL +R +EP + +++LDEK R +I+ ++D+++RRN+ S +IG Sbjct: 1 MHDIKWIRENPEAFDAALARRSVEPAAAGLIALDEKRRSVIQSLQDMQSRRNAASKEIGA 60 Query: 61 AIAEGNLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTSAN 120 A+A+ N+ L + LK E + +KE +P E+E+ +V + L +S +PN+P ++VP G + Sbjct: 61 AMAQKNMELAEKLKAEVADIKENMPRAEEEDRQVSAELNDALSRLPNMPFDDVPDGKDEH 120 Query: 121 ENILIRSVGKKPSAIHLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQ 180 +N++ R G+KP H ++EHFEIGEALG MDF+RA KLSG+RF+VLT LA LERALGQ Sbjct: 121 DNVVARVTGQKPGWNHAAKEHFEIGEALGYMDFERAAKLSGSRFTVLTSQLARLERALGQ 180 Query: 181 FMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGRWLIPTSEVSLTNLY 240 FMIDLHTSEHGYTEVS+PL+VRDEAM+GTGQ+PKFA+D+F TTDGRWLIPT+EV+LTNL Sbjct: 181 FMIDLHTSEHGYTEVSSPLMVRDEAMFGTGQLPKFAEDLFRTTDGRWLIPTAEVTLTNLV 240 Query: 241 SHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHE 300 S EI+E + LPLRFT L PSFRSEAGSAGRDTRGMLRQHQFWKCELVSIT E + EHE Sbjct: 241 SGEILEQEKLPLRFTALTPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITDAESAVAEHE 300 Query: 301 RMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQ 360 RM +CAEE+LKRL LH+R ++LCTGD+GFSA KTYDLEVWL GQN YREISSCS CG+FQ Sbjct: 301 RMTACAEEVLKRLGLHFRTLTLCTGDMGFSARKTYDLEVWLPGQNTYREISSCSVCGDFQ 360 Query: 361 SRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYMNNL 420 +RRMN+RYR + K+ KF HTLNGSG AVGRCLIA+LENYLN DGSVTIP VL PYM L Sbjct: 361 ARRMNARYRGKDDKATKFVHTLNGSGTAVGRCLIAVLENYLNDDGSVTIPDVLLPYMGGL 420 Query: 421 AVIKK 425 I+K Sbjct: 421 TRIEK 425 |
Species: Agrobacterium tumefaciens Genus: Agrobacterium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|325293088|ref|YP_004278952.1| Seryl-tRNA synthetase [Agrobacterium sp. H13-3] Length = 427 | Back alignment and organism information |
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Score = 608 bits (1567), Expect = e-172, Method: Compositional matrix adjust. Identities = 277/425 (65%), Positives = 343/425 (80%) Query: 1 MLDIQWIRQNPEHLDIALKKRHLEPQSEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQ 60 M DI+WIR+NPE D AL +R EP + +++LDEK R +I+ ++D+++RRN+ S IG Sbjct: 1 MHDIKWIRENPEAFDAALARRGAEPAASSLIALDEKRRSVIQSLQDMQSRRNAASKDIGA 60 Query: 61 AIAEGNLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTSAN 120 A+A+ N+ L + LK E + +KE +P E+E+ +V + L +S +PN+P ++VP G + Sbjct: 61 AMAQKNMELAEKLKAEVADIKENMPRAEEEDRQVTAELNDALSRLPNIPFDDVPDGKDEH 120 Query: 121 ENILIRSVGKKPSAIHLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQ 180 +N++ R VG+KP H ++EHFEIGEALG MDF+RA KLSG+RF+VLT LA LERALGQ Sbjct: 121 DNVVTRVVGQKPGWNHEAKEHFEIGEALGYMDFERAAKLSGSRFTVLTSQLARLERALGQ 180 Query: 181 FMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGRWLIPTSEVSLTNLY 240 FMIDLHTSEHGYTEVS+PL+VRDEAM+GTGQ+PKF++D+F TTDGRWLIPT+EV+LTNL Sbjct: 181 FMIDLHTSEHGYTEVSSPLMVRDEAMFGTGQLPKFSEDLFKTTDGRWLIPTAEVTLTNLV 240 Query: 241 SHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHE 300 S EI+E + LPLRFT L PSFRSEAGSAGRDTRGMLRQHQFWKCELVSIT E + EHE Sbjct: 241 SGEILEQEKLPLRFTALTPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITDAESAVAEHE 300 Query: 301 RMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQ 360 RM +CAEE+LKRL LH+R ++LCTGD+GFSA KTYDLEVWL GQN YREISSCS CG+FQ Sbjct: 301 RMTACAEEVLKRLGLHFRTMTLCTGDMGFSARKTYDLEVWLPGQNTYREISSCSVCGDFQ 360 Query: 361 SRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYMNNL 420 +RRMN+RYR + K+ KF HTLNGSG AVGRCLIA+LENYLN DGSVTIP VL PYM L Sbjct: 361 ARRMNARYRGKDDKATKFVHTLNGSGTAVGRCLIAVLENYLNDDGSVTIPNVLLPYMGGL 420 Query: 421 AVIKK 425 I+K Sbjct: 421 KRIEK 425 |
Species: Agrobacterium sp. H13-3 Genus: Agrobacterium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|222148967|ref|YP_002549924.1| seryl-tRNA synthetase [Agrobacterium vitis S4] Length = 427 | Back alignment and organism information |
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Score = 608 bits (1567), Expect = e-172, Method: Compositional matrix adjust. Identities = 275/425 (64%), Positives = 346/425 (81%) Query: 1 MLDIQWIRQNPEHLDIALKKRHLEPQSEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQ 60 MLDI+WIR+NPE LD AL KR EP S+ +++LDE+ R +++ ++D+++RRNS S +IG Sbjct: 1 MLDIKWIRENPELLDQALAKRGAEPLSQSLIALDEQRRAVVQDMQDMQSRRNSASKEIGA 60 Query: 61 AIAEGNLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTSAN 120 A+A+ +++L + LK E ++LK+ LP E++E + + L +S IPN+PL++VP+G + Sbjct: 61 AMAQKDMALAEKLKAEVASLKDTLPAAEEDERRLSAELTDALSRIPNIPLDDVPVGADEH 120 Query: 121 ENILIRSVGKKPSAIHLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQ 180 +N++ R VG+KP H + EH EIGEALG MDFDRA KLSGARF+VLTG LA LERALGQ Sbjct: 121 DNVVARVVGQKPGWNHTAIEHPEIGEALGYMDFDRAAKLSGARFTVLTGPLARLERALGQ 180 Query: 181 FMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGRWLIPTSEVSLTNLY 240 FMIDLHTSEHGYTEVS+PL+VRDEAMYGTGQ+PKF++++F TTDGRWLIPT+EV+LTNL Sbjct: 181 FMIDLHTSEHGYTEVSSPLMVRDEAMYGTGQLPKFSEELFKTTDGRWLIPTAEVTLTNLV 240 Query: 241 SHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHE 300 S EI++ + LPLRFT L PSFRSEAGSAGRDTRGMLRQHQFWKCELVSIT + + EHE Sbjct: 241 SGEILDQEKLPLRFTALTPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITDAQSALAEHE 300 Query: 301 RMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQ 360 RM +CAEE+LKRL LH+R ++LCTGD+GF A KTYDLEVWL GQN +REISSCS CG+FQ Sbjct: 301 RMTACAEEVLKRLGLHFRTMTLCTGDMGFGAAKTYDLEVWLPGQNTFREISSCSVCGDFQ 360 Query: 361 SRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYMNNL 420 RRMN+RYR+ + K F HTLNGSG AVGRCLIA++ENYLN DGS+T+P VL PYM L Sbjct: 361 GRRMNARYRNKDGKGTTFVHTLNGSGTAVGRCLIAVMENYLNEDGSITVPDVLLPYMGGL 420 Query: 421 AVIKK 425 I+K Sbjct: 421 TRIEK 425 |
Species: Agrobacterium vitis Genus: Agrobacterium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|241204418|ref|YP_002975514.1| seryl-tRNA synthetase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 427 | Back alignment and organism information |
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Score = 601 bits (1549), Expect = e-170, Method: Compositional matrix adjust. Identities = 277/425 (65%), Positives = 340/425 (80%) Query: 1 MLDIQWIRQNPEHLDIALKKRHLEPQSEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQ 60 MLDI+WIR+NPE LD AL KR EP ++ +++LDEK R ++K +D+ +RRN S +IG Sbjct: 1 MLDIKWIRENPEALDAALAKRGAEPLAQSLVALDEKRRSAVQKAQDLLSRRNLASKEIGA 60 Query: 61 AIAEGNLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTSAN 120 A+A+ N L + LK E S LK LP +E+E+ ++ + L +S IPN+P ++VP+G + Sbjct: 61 AMAQKNGELAEKLKAEVSELKTLLPAIEEEDRQLTAELNDALSRIPNIPFDDVPVGKDEH 120 Query: 121 ENILIRSVGKKPSAIHLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQ 180 +N++ R+VG+KP H +EHFEIGEALG MDF+RA KLSG+RF+VLTG LA LERALGQ Sbjct: 121 DNVVTRTVGEKPRWNHAPKEHFEIGEALGYMDFERAAKLSGSRFTVLTGPLARLERALGQ 180 Query: 181 FMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGRWLIPTSEVSLTNLY 240 FMIDLHTSEHGY+EVS+PL+VRDEA+YGT Q+PKFADD+F TTDGRWLIPT+EV+LTNL Sbjct: 181 FMIDLHTSEHGYSEVSSPLMVRDEAVYGTAQLPKFADDLFRTTDGRWLIPTAEVTLTNLV 240 Query: 241 SHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHE 300 EI++ + LPLRFT L PSFRSEAGSAGRDTRGMLRQHQFWKCELVSIT E + EHE Sbjct: 241 REEILDQEKLPLRFTALTPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITDAESAVAEHE 300 Query: 301 RMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQ 360 RM +CAEE+LKRL LH+R ++LCTGD+GF + KTYDLEVWL GQN +REISSCS CG+FQ Sbjct: 301 RMTACAEEVLKRLGLHFRTMTLCTGDMGFGSRKTYDLEVWLPGQNAFREISSCSVCGDFQ 360 Query: 361 SRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYMNNL 420 RRMN+RYR K+ KF HTLNGSG AVGRCLIA+LENYLN DGSVTIP VL PYM L Sbjct: 361 GRRMNARYRGKEDKNNKFVHTLNGSGTAVGRCLIAVLENYLNEDGSVTIPDVLLPYMGGL 420 Query: 421 AVIKK 425 I++ Sbjct: 421 TKIER 425 |
Species: Rhizobium leguminosarum Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|116251809|ref|YP_767647.1| seryl-tRNA synthetase [Rhizobium leguminosarum bv. viciae 3841] Length = 427 | Back alignment and organism information |
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Score = 600 bits (1548), Expect = e-169, Method: Compositional matrix adjust. Identities = 278/425 (65%), Positives = 340/425 (80%) Query: 1 MLDIQWIRQNPEHLDIALKKRHLEPQSEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQ 60 MLDI+WIR+NPE LD AL KR EP ++ +++LDEK R ++K +D+ +RRN S +IG Sbjct: 1 MLDIKWIRENPEALDAALAKRGAEPLAQSLVALDEKRRSAVQKAQDLLSRRNLASKEIGA 60 Query: 61 AIAEGNLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTSAN 120 A+A+ N L + LK E S LK LP +E+E+ ++ + L +S IPN+P ++VP+G + Sbjct: 61 AMAQKNSELAEKLKAEVSELKTLLPAIEEEDRQLTAELNDALSRIPNIPFDDVPVGKDEH 120 Query: 121 ENILIRSVGKKPSAIHLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQ 180 +NI+ R+VG+KP H +EHFEIGEALG MDF+RA KLSG+RF+VLTG LA LERALGQ Sbjct: 121 DNIVTRTVGEKPRWNHAPKEHFEIGEALGYMDFERAAKLSGSRFTVLTGPLARLERALGQ 180 Query: 181 FMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGRWLIPTSEVSLTNLY 240 FMIDLHTSEHGY EVS+PL+VRDEA+YGT Q+PKFA+D+F TTDGRWLIPT+EV+LTNL Sbjct: 181 FMIDLHTSEHGYIEVSSPLMVRDEAVYGTAQLPKFAEDLFRTTDGRWLIPTAEVTLTNLV 240 Query: 241 SHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHE 300 EI++ + LPLRFT L PSFRSEAGSAGRDTRGMLRQHQFWKCELVSIT E + EHE Sbjct: 241 REEILDQEKLPLRFTALTPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITDAESAVAEHE 300 Query: 301 RMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQ 360 RM +CAEE+LKRL LH+R ++LCTGD+GF + KTYDLEVWL GQN +REISSCS CG+FQ Sbjct: 301 RMTACAEEVLKRLGLHFRTMTLCTGDMGFGSRKTYDLEVWLPGQNAFREISSCSVCGDFQ 360 Query: 361 SRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYMNNL 420 RRMN+RYR + KS KF HTLNGSG AVGRCLIA+LENYLN DGSVTIP VL PYM L Sbjct: 361 GRRMNARYRGKDDKSNKFVHTLNGSGTAVGRCLIAVLENYLNEDGSVTIPDVLLPYMGGL 420 Query: 421 AVIKK 425 I++ Sbjct: 421 TKIER 425 |
Species: Rhizobium leguminosarum Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|86357454|ref|YP_469346.1| seryl-tRNA synthetase [Rhizobium etli CFN 42] Length = 427 | Back alignment and organism information |
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Score = 592 bits (1525), Expect = e-167, Method: Compositional matrix adjust. Identities = 275/425 (64%), Positives = 337/425 (79%) Query: 1 MLDIQWIRQNPEHLDIALKKRHLEPQSEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQ 60 MLDI+WIR+NPE LD AL KR EP ++ +++LDEK R ++K +D+ +RRN+ S +IG Sbjct: 1 MLDIKWIRENPEALDAALAKRGAEPLAQTLVALDEKRRSAVQKTQDLLSRRNAASKEIGA 60 Query: 61 AIAEGNLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTSAN 120 A+A+ N L + LK E + +KE LP E+EE + + L +S IPNVP ++VP+G + Sbjct: 61 AMAQKNAELAEKLKAEVAEIKETLPAAEEEERTLSAELIDALSRIPNVPFDDVPVGKDEH 120 Query: 121 ENILIRSVGKKPSAIHLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQ 180 +N + R VG+KP H REHFEIGEALG MDF+RA KLSG+RF+VLTG LA LERALGQ Sbjct: 121 DNAVARIVGEKPRWNHTPREHFEIGEALGYMDFERAAKLSGSRFTVLTGPLARLERALGQ 180 Query: 181 FMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGRWLIPTSEVSLTNLY 240 FMIDLHT EHGYTEVS+PL+VR EA++GTG +PKF +D+F TTDGR+LIPT+EV+LTNL Sbjct: 181 FMIDLHTREHGYTEVSSPLMVRAEAVFGTGSLPKFEEDLFKTTDGRYLIPTAEVTLTNLV 240 Query: 241 SHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHE 300 EI++ + LPLRFT L PSFRSEAGSAGRDTRGMLRQHQFWKCELVSIT E S EHE Sbjct: 241 REEILDQEKLPLRFTALTPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITDAESSIAEHE 300 Query: 301 RMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQ 360 RM +CAEE+LKRL LH+R ++LCTGD+GF + KTYDLEVWL GQN +REISSCS CG+FQ Sbjct: 301 RMTACAEEVLKRLGLHFRTMTLCTGDMGFGSRKTYDLEVWLPGQNAFREISSCSVCGDFQ 360 Query: 361 SRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYMNNL 420 +RRMN+RYR + K+ KF HTLNGSG AVGRCLIA+LENYLN DGSVTIP VL PYM L Sbjct: 361 ARRMNARYRGKDDKNNKFVHTLNGSGTAVGRCLIAVLENYLNEDGSVTIPDVLLPYMGGL 420 Query: 421 AVIKK 425 I++ Sbjct: 421 TKIER 425 |
Species: Rhizobium etli Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|327189128|gb|EGE56313.1| seryl-tRNA synthetase [Rhizobium etli CNPAF512] Length = 427 | Back alignment and organism information |
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Score = 591 bits (1523), Expect = e-167, Method: Compositional matrix adjust. Identities = 271/425 (63%), Positives = 339/425 (79%) Query: 1 MLDIQWIRQNPEHLDIALKKRHLEPQSEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQ 60 MLDI+WIR+NPE LD AL KR EP ++ +++LDEK R ++K +D+ +RRN S +IG Sbjct: 1 MLDIKWIRENPEALDAALAKRGAEPLAQSLVALDEKRRSAVQKAQDMLSRRNLASKEIGA 60 Query: 61 AIAEGNLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTSAN 120 A+A+ N L + LK E + LK LP +E+EE ++ + L +S IPN+P ++VP+G + Sbjct: 61 AMAQRNGELAEKLKAEVAELKTLLPAIEEEERQLTAELNDALSRIPNIPFDDVPVGKDEH 120 Query: 121 ENILIRSVGKKPSAIHLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQ 180 +N++ R+VG+KP H +EHFEIGEALG MDF+RA KLSG+RF+VLTG LA LERALGQ Sbjct: 121 DNVVTRTVGEKPRWNHTPKEHFEIGEALGYMDFERAAKLSGSRFTVLTGQLARLERALGQ 180 Query: 181 FMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGRWLIPTSEVSLTNLY 240 FMIDLHT EHGYTEVS+PL+VR EA++GTG +PKF +D+F TTDGR+LIPT+EV+LTNL Sbjct: 181 FMIDLHTREHGYTEVSSPLMVRAEALFGTGNLPKFEEDLFKTTDGRYLIPTAEVTLTNLV 240 Query: 241 SHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHE 300 EI++ + LPLRFT L PSFRSEAGSAGRDTRGMLRQHQFWKCELVSIT E + EHE Sbjct: 241 REEILDQEKLPLRFTALTPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITDAESAIAEHE 300 Query: 301 RMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQ 360 RM +CAEE+LKRL LH+R ++LCTGD+GF + KTYDLEVWL GQN +REISSCS CG+FQ Sbjct: 301 RMTACAEEVLKRLGLHFRTMTLCTGDMGFGSRKTYDLEVWLPGQNAFREISSCSVCGDFQ 360 Query: 361 SRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYMNNL 420 +RRMN+RYR + K+ +F HTLNGSG AVGRCLIA+LENYLN DGSVTIP VL PYM L Sbjct: 361 ARRMNARYRGKDDKTNRFVHTLNGSGTAVGRCLIAVLENYLNEDGSVTIPDVLLPYMGGL 420 Query: 421 AVIKK 425 I++ Sbjct: 421 TKIER 425 |
Species: Rhizobium etli Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|190891515|ref|YP_001978057.1| seryl-tRNA synthetase [Rhizobium etli CIAT 652] Length = 427 | Back alignment and organism information |
---|
Score = 590 bits (1520), Expect = e-166, Method: Compositional matrix adjust. Identities = 270/425 (63%), Positives = 339/425 (79%) Query: 1 MLDIQWIRQNPEHLDIALKKRHLEPQSEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQ 60 MLDI+WIR+NPE LD AL KR EPQ++ +++LDEK R ++K +D+ +RRN S +IG Sbjct: 1 MLDIKWIRENPEALDAALAKRGAEPQAQSLVALDEKRRSAVQKAQDMLSRRNLASKEIGA 60 Query: 61 AIAEGNLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTSAN 120 A+A+ N L + LK E + LK LP +E+E+ ++ + L +S IPN+P ++VP+G + Sbjct: 61 AMAQKNGELAEKLKAEVAELKTLLPAIEEEDRQLTAELNDALSRIPNIPFDDVPVGKDEH 120 Query: 121 ENILIRSVGKKPSAIHLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQ 180 +N++ R+VG+KP H +EHFEIGEALG MDF+RA KLSG+RF+VLTG LA LERALGQ Sbjct: 121 DNVVTRTVGEKPRWNHTPKEHFEIGEALGYMDFERAAKLSGSRFTVLTGPLARLERALGQ 180 Query: 181 FMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGRWLIPTSEVSLTNLY 240 FMIDLHT EHGYTEVS+PL+VR EA++GTG +PKF +D+F TTD R+LIPT+EV+LTNL Sbjct: 181 FMIDLHTREHGYTEVSSPLMVRAEALFGTGNLPKFEEDLFKTTDDRYLIPTAEVTLTNLV 240 Query: 241 SHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHE 300 EI+E + LPLRFT L PSFRSEAGSAGRDTRGMLRQHQFWKCELVSIT + + EHE Sbjct: 241 REEILEQEKLPLRFTALTPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITDADSAIAEHE 300 Query: 301 RMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQ 360 RM +CAEE+LKRL LH+R ++LCTGD+GF + KTYDLEVWL GQN +REISSCS CG+FQ Sbjct: 301 RMTACAEEVLKRLGLHFRTMTLCTGDMGFGSRKTYDLEVWLPGQNAFREISSCSVCGDFQ 360 Query: 361 SRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYMNNL 420 +RRMN+RYR + K+ +F HTLNGSG AVGRCLIA+LENYLN DGSVTIP VL PYM L Sbjct: 361 ARRMNARYRGKDDKTNRFVHTLNGSGTAVGRCLIAVLENYLNEDGSVTIPDVLLPYMGGL 420 Query: 421 AVIKK 425 I++ Sbjct: 421 TKIER 425 |
Species: Rhizobium etli Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|222085788|ref|YP_002544318.1| seryl-tRNA synthetase (serine-tRNA ligase) protein [Agrobacterium radiobacter K84] Length = 427 | Back alignment and organism information |
---|
Score = 588 bits (1515), Expect = e-166, Method: Compositional matrix adjust. Identities = 272/425 (64%), Positives = 336/425 (79%) Query: 1 MLDIQWIRQNPEHLDIALKKRHLEPQSEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQ 60 MLDI+WIR+N E LD AL KR EP S+ +++LDEK R +I+ ++D+++RRN+ S +IG Sbjct: 1 MLDIKWIRENAEVLDAALAKRGAEPLSQGLIALDEKRRSIIQSVQDMQSRRNAASKEIGA 60 Query: 61 AIAEGNLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTSAN 120 A+A+ N L + LK E + +K LP E+EE + + L +S IPN+PL++VP+G + Sbjct: 61 AMAQKNTELAEKLKGEVADIKTSLPAAEEEERVLTAELNDALSRIPNIPLDDVPVGKDEH 120 Query: 121 ENILIRSVGKKPSAIHLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQ 180 +N++ S G KP+ H +EH+EIGE LG MDF+RA KLSG+RF+VLT LA LERALGQ Sbjct: 121 DNVVKHSWGAKPAWNHKPKEHYEIGEELGYMDFERAAKLSGSRFTVLTSQLARLERALGQ 180 Query: 181 FMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGRWLIPTSEVSLTNLY 240 FM+DLHTSEHGYTEVS+PL+VRDEAM+GTGQ+PKFA+D F TT G WLIPT+EV+LTNL Sbjct: 181 FMLDLHTSEHGYTEVSSPLMVRDEAMFGTGQLPKFAEDSFRTTGGHWLIPTAEVTLTNLV 240 Query: 241 SHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHE 300 S +I++ + LPLRFT L PSFRSEAGSAGRDTRGMLRQHQFWKCELVSIT E S EHE Sbjct: 241 SGDILDQEKLPLRFTALTPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITDAESSIAEHE 300 Query: 301 RMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQ 360 RM +CAEE+LKRL LHYRV++L TGD+GF A KTYDLEVWL GQ+ YREISSCS CG+FQ Sbjct: 301 RMTACAEEVLKRLGLHYRVMTLSTGDMGFGARKTYDLEVWLPGQDTYREISSCSVCGDFQ 360 Query: 361 SRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYMNNL 420 +RRMN+RYR + K KF HTLNGSG AVGRCLIA+LENYLN DGSVT+P L PYM L Sbjct: 361 ARRMNARYRGKDDKGTKFVHTLNGSGTAVGRCLIAVLENYLNDDGSVTVPDALLPYMGGL 420 Query: 421 AVIKK 425 I++ Sbjct: 421 KRIER 425 |
Species: Agrobacterium tumefaciens Genus: Agrobacterium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 430 | seryl-tRNA synthetase [Candidatus Liberibacter asiaticu | ||
PRK05431 | 425 | PRK05431, PRK05431, seryl-tRNA synthetase; Provisional | 0.0 | |
TIGR00414 | 418 | TIGR00414, serS, seryl-tRNA synthetase | 1e-137 | |
KOG2509 | 455 | KOG2509, KOG2509, KOG2509, Seryl-tRNA synthetase [Trans | 3e-82 | |
PLN02320 | 502 | PLN02320, PLN02320, seryl-tRNA synthetase | 3e-70 | |
PLN02678 | 448 | PLN02678, PLN02678, seryl-tRNA synthetase | 2e-68 | |
COG0172 | 429 | COG0172, SerS, Seryl-tRNA synthetase [Translation, ribo | 1e-151 | |
cd00770 | 297 | cd00770, SerRS_core, Seryl-tRNA synthetase (SerRS) clas | 1e-118 | |
pfam00587 | 170 | pfam00587, tRNA-synt_2b, tRNA synthetase class II core | 6e-43 | |
TIGR00409 | 568 | TIGR00409, proS_fam_II, prolyl-tRNA synthetase, family | 4e-07 | |
PRK00960 | 517 | PRK00960, PRK00960, seryl-tRNA synthetase; Provisional | 2e-05 | |
TIGR00415 | 520 | TIGR00415, serS_MJ, seryl-tRNA synthetase, Methanococcu | 2e-04 | |
pfam02403 | 108 | pfam02403, Seryl_tRNA_N, Seryl-tRNA synthetase N-termin | 1e-21 | |
cd00670 | 235 | cd00670, Gly_His_Pro_Ser_Thr_tRS_core, Gly_His_Pro_Ser_ | 8e-20 | |
cd00768 | 211 | cd00768, class_II_aaRS-like_core, Class II tRNA amino-a | 3e-14 | |
COG0442 | 500 | COG0442, ProS, Prolyl-tRNA synthetase [Translation, rib | 4e-13 | |
cd00779 | 255 | cd00779, ProRS_core_prok, Prolyl-tRNA synthetase (ProRS | 6e-11 | |
KOG2324 | 457 | KOG2324, KOG2324, KOG2324, Prolyl-tRNA synthetase [Tran | 6e-07 | |
cd00772 | 264 | cd00772, ProRS_core, Prolyl-tRNA synthetase (ProRS) cla | 6e-05 | |
COG0441 | 589 | COG0441, ThrS, Threonyl-tRNA synthetase [Translation, r | 2e-06 | |
cd00771 | 298 | cd00771, ThrRS_core, Threonyl-tRNA synthetase (ThrRS) c | 3e-06 | |
TIGR00418 | 563 | TIGR00418, thrS, threonyl-tRNA synthetase | 3e-06 | |
cd00778 | 261 | cd00778, ProRS_core_arch_euk, Prolyl-tRNA synthetase (P | 0.001 |
>gnl|CDD|180077 PRK05431, PRK05431, seryl-tRNA synthetase; Provisional | Back alignment and domain information |
---|
Score = 692 bits (1789), Expect = 0.0 Identities = 234/427 (54%), Positives = 304/427 (71%), Gaps = 3/427 (0%) Query: 1 MLDIQWIRQNPEHLDIALKKRHLEPQSEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQ 60 MLDI+ IR+NPE + AL KR + +L LDE+ R L ++E+++A RN+ S +IGQ Sbjct: 1 MLDIKLIRENPEAVKEALAKRGFPLDVDELLELDEERRELQTELEELQAERNALSKEIGQ 60 Query: 61 AIAEGNLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTSAN 120 A +G +AL E LKE++ LE E E+ + L++L+ IPN+P + VP+G + Sbjct: 61 AKRKGED--AEALIAEVKELKEEIKALEAELDELEAELEELLLRIPNLPHDSVPVGKDED 118 Query: 121 ENILIRSVGKKPSAIHLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQ 180 +N+ +R G+ ++H+E+GE LG++DF+RA K+SG+RF VL G A LERAL Q Sbjct: 119 DNVEVRRWGEPREFDFEPKDHWELGEKLGILDFERAAKVSGSRFYVLKGDGARLERALIQ 178 Query: 181 FMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMF-CTTDGRWLIPTSEVSLTNL 239 FM+DLHT EHGYTEV P LV +E+MYGTGQ+PKF +D++ D +LIPT+EV LTNL Sbjct: 179 FMLDLHTEEHGYTEVIPPYLVNEESMYGTGQLPKFEEDLYKIEDDDLYLIPTAEVPLTNL 238 Query: 240 YSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEH 299 + EI++ + LPL++T +P FRSEAGSAGRDTRG++R HQF K ELV T+ EDS+ E Sbjct: 239 HRDEILDEEELPLKYTAYSPCFRSEAGSAGRDTRGLIRVHQFDKVELVKFTKPEDSYAEL 298 Query: 300 ERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNF 359 E + + AEEIL++L+L YRVV LCTGDLGFSA KTYDLEVWL QN YREISSCS C +F Sbjct: 299 EELTANAEEILQKLELPYRVVLLCTGDLGFSAAKTYDLEVWLPSQNTYREISSCSNCTDF 358 Query: 360 QSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYMNN 419 Q+RR N RYRD + HTLNGSG+AVGR L+AILENY ADGSVTIP VLRPYM Sbjct: 359 QARRANIRYRDEGDGKPELVHTLNGSGLAVGRTLVAILENYQQADGSVTIPEVLRPYMGG 418 Query: 420 LAVIKKE 426 L VI + Sbjct: 419 LEVIPPK 425 |
Length = 425 |
>gnl|CDD|161867 TIGR00414, serS, seryl-tRNA synthetase | Back alignment and domain information |
---|
Score = 484 bits (1248), Expect = e-137 Identities = 200/420 (47%), Positives = 284/420 (67%), Gaps = 5/420 (1%) Query: 1 MLDIQWIRQNPEHLDIALKKRHL--EPQSEYILSLDEKNRILIKKIEDIRARRNSNSAQI 58 MLD + +R NP+ + +LK R L + E +++LD++ + L+ +IE+++A+RN S QI Sbjct: 1 MLDRKLLRNNPDLVKESLKARGLSVDIDLEKLIALDDERKKLLSEIEELQAKRNELSKQI 60 Query: 59 GQAIAEGNLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTS 118 G+A + ++ +K E LKE+L L + + L+ + IPN+P E VP+G Sbjct: 61 GKAKGQKK-DKIEEIKKELKELKEELTELSAALKALEAELQDKLLSIPNIPHESVPVGKD 119 Query: 119 ANENILIRSVGKKPSAIHLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERAL 178 +N+ ++ G P + H+E+GE LG +DFDRA K++G+RF L A LERAL Sbjct: 120 EEDNLEVKRWGTPPVFDFKPKPHWELGEKLGGLDFDRAVKVTGSRFYYLKNDGAKLERAL 179 Query: 179 GQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGR-WLIPTSEVSLT 237 FM+DL ++GY E+ P LV +E++ GTGQ+PKF +D+F D +LIPT+EV LT Sbjct: 180 INFMLDLL-EKNGYQEIYPPYLVNEESLDGTGQLPKFEEDIFKLEDTDLYLIPTAEVPLT 238 Query: 238 NLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFT 297 NL+ +EI+E + LP+++T +P FRSEAGS G+DT+G++R HQF K ELV + E+S Sbjct: 239 NLHRNEILEEEELPIKYTAHSPCFRSEAGSYGKDTKGLIRVHQFNKVELVKFCKPEESAE 298 Query: 298 EHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCG 357 E E M S AE+IL+ L+L YRVV+LC+GDLGFSA K YDLEVW+ GQN YREISSCS C Sbjct: 299 ELEEMTSDAEQILQELELPYRVVNLCSGDLGFSAAKKYDLEVWMPGQNTYREISSCSNCT 358 Query: 358 NFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYM 417 +FQ+RR+N RY+D N K+ HTLNG+ +A+GR ++AILENY DGSV IP VLR Y+ Sbjct: 359 DFQARRLNIRYKDKNKGKNKYVHTLNGTALAIGRTIVAILENYQTEDGSVEIPEVLRKYL 418 |
This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model. Length = 418 |
>gnl|CDD|37720 KOG2509, KOG2509, KOG2509, Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
---|
Score = 301 bits (772), Expect = 3e-82 Identities = 147/423 (34%), Positives = 227/423 (53%), Gaps = 31/423 (7%) Query: 2 LDIQWIRQNPEHLDIALKKRHLEPQSEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQA 61 LD +WI E + L+++ L K+I D++ ++ + Q+ ++ Sbjct: 39 LDKEWIETRFE-----------------LDELNKEKNKLNKEIGDLKLKKKEDIGQLEES 81 Query: 62 IAEGNLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTSANE 121 A+ + E LKE+ LE++E ++ L +++ IPN+ VP+ Sbjct: 82 KAK------NTEGAERKLLKEEAVELEEDESKLEDELYEVLLQIPNITHPSVPVSNEEQA 135 Query: 122 NILIRSVGKKPSAIHLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQF 181 N++ R VG H E+ ALG +D +R K+SG R L G A LE+AL + Sbjct: 136 NVVQR-VGGPLEFEFKLSHHDELVRALGFIDLERGAKVSGHRGYYLKGAGAFLEQALINY 194 Query: 182 MIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDG---RWLIPTSEVSLTN 238 +D + GYT ++ P ++R E M GQ+P+F ++ + DG ++LI T+E L Sbjct: 195 ALDF-LNAKGYTPLTTPDILRKEVMQKCGQLPRFDEEQYYVLDGGDEKYLIATAEQPLAA 253 Query: 239 LYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTE 298 + E +E LP+++ ++ FR+EAGS G+DT+G+ R HQF K E IT EDS+ Sbjct: 254 YHRDEWLEEDQLPIKYVGVSRCFRAEAGSHGKDTKGLYRVHQFEKVEQFVITGPEDSWEM 313 Query: 299 HERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGN 358 E M++ EE + L L YRV+++ +G+LG +A K YD+E W+ G+ Y E+ SCS C + Sbjct: 314 LEEMINNQEEFYQSLGLPYRVLNMPSGELGAAAAKKYDIEAWMPGRGAYGELVSCSNCTD 373 Query: 359 FQSRRMNSRYRDP--NSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPY 416 +QSRR+ RY N K+ HTLNG+ A R L AILENY DG + +P VLRPY Sbjct: 374 YQSRRLGIRYGQKKTNDGEKKYVHTLNGTACATPRALCAILENYQTEDG-IEVPEVLRPY 432 Query: 417 MNN 419 M Sbjct: 433 MGG 435 |
Length = 455 |
>gnl|CDD|177954 PLN02320, PLN02320, seryl-tRNA synthetase | Back alignment and domain information |
---|
Score = 261 bits (668), Expect = 3e-70 Identities = 149/442 (33%), Positives = 237/442 (53%), Gaps = 23/442 (5%) Query: 2 LDIQWIRQNPEHLDIALKKRHLEPQSEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQA 61 +D +WIR N E + I ++ R+ E +L L E L K++E +RA RN+ + ++ Sbjct: 67 IDFKWIRDNKEAVAINIRNRNSNANLELVLELYENMLALQKEVERLRAERNAVANKM--- 123 Query: 62 IAEGNL--SLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTSA 119 +G L S AL E LKE L LE++ ++ L+ IPN+ +VP+G Sbjct: 124 --KGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQSIPNMTHPDVPVGGE- 180 Query: 120 NENILIRSVGKKPSAIHLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALG 179 + + + + VG ++H ++G+ L L DFD A ++SG++F L LE AL Sbjct: 181 DSSAVRKEVGSPREFSFPIKDHLQLGKELDLFDFDAAAEVSGSKFYYLKNEAVLLEMALV 240 Query: 180 QFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDG--RWLIPTSEVSLT 237 + + + G+T ++ P +VR + G P+ + + DG + LI T+E+ + Sbjct: 241 NWTLS-EVMKKGFTPLTTPEIVRSSVVEKCGFQPRGDNTQVYSIDGSDQCLIGTAEIPVG 299 Query: 238 NLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFT 297 ++ I+ +LPL++ + FR+EAG+AG TRG+ R HQF K E+ I R E+S + Sbjct: 300 GIHMDSILLESALPLKYVAFSHCFRTEAGAAGAATRGLYRVHQFSKVEMFVICRPEESES 359 Query: 298 EHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCG 357 HE ++ E++ L LH++ + + T DLG A + +D+E W+ G Y EISS S C Sbjct: 360 FHEELIQIEEDLFTSLGLHFKTLDMATADLGAPAYRKFDIEAWMPGLGRYGEISSASNCT 419 Query: 358 NFQSRRMNSRYR--DP----------NSKSLKFTHTLNGSGVAVGRCLIAILENYLNADG 405 ++QSRR+ RYR +P + KF HTLN + AV R ++ +LENY DG Sbjct: 420 DYQSRRLGIRYRPSEPPQTNPKKGKGSLGPTKFVHTLNATACAVPRMIVCLLENYQQEDG 479 Query: 406 SVTIPTVLRPYMNNLAVIKKEH 427 SV IP LRP+M L +IK + Sbjct: 480 SVVIPEPLRPFMGGLELIKPKS 501 |
Length = 502 |
>gnl|CDD|178282 PLN02678, PLN02678, seryl-tRNA synthetase | Back alignment and domain information |
---|
Score = 255 bits (652), Expect = 2e-68 Identities = 140/433 (32%), Positives = 228/433 (52%), Gaps = 19/433 (4%) Query: 1 MLDIQWIRQ----NPEHLDIALKKRHLEPQS-EYILSLDEKNRILIKKIEDIRARRNSNS 55 MLDI R+ +PE + + ++R + + +++LD++ R +++ +R N + Sbjct: 1 MLDINLFREEKGGDPELIRESQRRRFASVELVDEVIALDKEWRQRQFELDSLRKEFNKLN 60 Query: 56 AQIGQ-AIAEGNLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVP 114 ++ + IA+ + L ET LK+++ E E E ++L + I N+ + VP Sbjct: 61 KEVAKLKIAKED---ATELIAETKELKKEITEKEAEVQEAKAALDAKLKTIGNLVHDSVP 117 Query: 115 IGTSANENILIRSVGKKPSAIHLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHL 174 + N ++R+ G+K L + H ++ E LG++D +R ++G R L G L Sbjct: 118 VSNDEANNAVVRTWGEKRQEPKL-KNHVDLVELLGIVDTERGADVAGGRGYYLKGAGVLL 176 Query: 175 ERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTT---DGRWLIPT 231 +AL F + + GYT + P +R + M Q+ +F ++++ T D ++LI T Sbjct: 177 NQALINFGLAF-LRKRGYTPLQTPFFMRKDVMAKCAQLAQFDEELYKVTGEGDDKYLIAT 235 Query: 232 SEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSIT- 290 SE L + + I+ K LP+R+ + FR EAGS GRDT G+ R HQF K E IT Sbjct: 236 SEQPLCAYHRGDWIDPKELPIRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITS 295 Query: 291 -REEDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYRE 349 +S+ HE ML +E+ + L + Y+VVS+ +G L +A K YDLE W YRE Sbjct: 296 PNGNESWEMHEEMLKNSEDFYQSLGIPYQVVSIVSGALNDAAAKKYDLEAWFPASKTYRE 355 Query: 350 ISSCSTCGNFQSRRMNSRYRDP--NSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSV 407 + SCS C ++QSRR+ RY N ++ ++ H LN + A R L ILENY DG V Sbjct: 356 LVSCSNCTDYQSRRLEIRYGQKKSNEQTKQYVHLLNSTLTATERTLCCILENYQTEDG-V 414 Query: 408 TIPTVLRPYMNNL 420 +P VL+P+M + Sbjct: 415 RVPEVLQPFMGGI 427 |
Length = 448 |
>gnl|CDD|30521 COG0172, SerS, Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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Score = 530 bits (1367), Expect = e-151 Identities = 225/430 (52%), Positives = 298/430 (69%), Gaps = 6/430 (1%) Query: 1 MLDIQWIRQNPEHLDIALKKRH-LEPQSEYILSLDEKNRILIKKIEDIRARRNSNSAQIG 59 MLD++ IR+NP+ + LKKR + +L LDE+ R L++++E+++A RN S +IG Sbjct: 1 MLDLKLIRENPDAVREKLKKRGGDALDVDKLLELDEERRKLLRELEELQAERNELSKEIG 60 Query: 60 QAIAEGNLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTSA 119 +A+ G + L E LKE+L LE E+ + L L+ IPN+P E VP+G Sbjct: 61 RALKRGE-DDAEELIAEVKELKEKLKELEAALDELEAELDTLLLTIPNIPHESVPVGKDE 119 Query: 120 NENILIRSVGKKPSAI--HLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERA 177 ++N+ +R G+ P + ++H E+GE LGL+DF+RA K+SG+RF G A LERA Sbjct: 120 DDNVEVRRWGEPPVFVFDFEPKDHVELGEKLGLLDFERAAKVSGSRFYFYKGKGARLERA 179 Query: 178 LGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMF-CTTDGRWLIPTSEVSL 236 L QFM+DLHT +HG+TEV P LV E+M+GTGQ+PKF +D++ +LIPT+EV L Sbjct: 180 LIQFMLDLHT-KHGFTEVLPPYLVNLESMFGTGQLPKFEEDLYKVEDPDLYLIPTAEVPL 238 Query: 237 TNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSF 296 TNL+ EI++ + LP+++T +P FRSEAGSAG+DTRG++R HQF K ELV IT+ E+S Sbjct: 239 TNLHRDEILDEEDLPIKYTAYSPCFRSEAGSAGKDTRGLIRVHQFDKVELVVITKPEESE 298 Query: 297 TEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTC 356 E E ML AEE+L+ L+L YRVV+LCTGDLGFSA K YDLEVWL GQN YREISSCS C Sbjct: 299 EELEEMLGNAEEVLQELELPYRVVNLCTGDLGFSAAKKYDLEVWLPGQNKYREISSCSNC 358 Query: 357 GNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPY 416 +FQ+RR+N RYRD +F HTLNGSG+AVGR L+AILENY DGSV IP VLRPY Sbjct: 359 TDFQARRLNIRYRDKEEGKREFVHTLNGSGLAVGRTLVAILENYQQEDGSVKIPEVLRPY 418 Query: 417 MNNLAVIKKE 426 M L +I K Sbjct: 419 MGGLEIIPKP 428 |
Length = 429 |
>gnl|CDD|29815 cd00770, SerRS_core, Seryl-tRNA synthetase (SerRS) class II core catalytic domain | Back alignment and domain information |
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Score = 419 bits (1080), Expect = e-118 Identities = 152/298 (51%), Positives = 200/298 (67%), Gaps = 2/298 (0%) Query: 121 ENILIRSVGKKPSAIHLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQ 180 +N+ IR G+ ++H E+GE L ++DF+R K+SG+RF L G A LERAL Sbjct: 1 DNVEIRRWGEPRVFDFKPKDHVELGEKLDILDFERGAKVSGSRFYYLKGDGALLERALIN 60 Query: 181 FMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMF-CTTDGRWLIPTSEVSLTNL 239 F +D T + G+T V P LVR E M GTGQ+PKF + ++ + +LI T+EV L L Sbjct: 61 FALDFLT-KRGFTPVIPPFLVRKEVMEGTGQLPKFDEQLYKVEGEDLYLIATAEVPLAAL 119 Query: 240 YSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEH 299 + EI+E + LPL++ +P FR EAGSAGRDTRG+ R HQF K E T+ E+S+ E Sbjct: 120 HRDEILEEEELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQFVFTKPEESWEEL 179 Query: 300 ERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNF 359 E ++S AEEIL+ L L YRVV++CTGDLGF+A K YD+E W+ GQ YREISSCS C +F Sbjct: 180 EELISNAEEILQELGLPYRVVNICTGDLGFAAAKKYDIEAWMPGQGKYREISSCSNCTDF 239 Query: 360 QSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYM 417 Q+RR+N RYRD ++ HTLNG+ +A R ++AILENY DGSV IP VLRPYM Sbjct: 240 QARRLNIRYRDKKDGKKQYVHTLNGTALATPRTIVAILENYQTEDGSVVIPEVLRPYM 297 |
SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.. Length = 297 |
>gnl|CDD|144252 pfam00587, tRNA-synt_2b, tRNA synthetase class II core domain (G, H, P, S and T) | Back alignment and domain information |
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Score = 170 bits (434), Expect = 6e-43 Identities = 68/175 (38%), Positives = 91/175 (52%), Gaps = 9/175 (5%) Query: 174 LERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGR----WLI 229 L AL F+ DL +GY EV P+L E G+G + D+M+ D +L Sbjct: 1 LRNALENFIRDLFK-RYGYQEVDTPILEPKELWEGSGHWDDYFDEMYRFKDRGGEELYLR 59 Query: 230 PTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSI 289 PT+EV +T L+ +EI+ + LPL+ + P FR EA R RG+ R +F + + Sbjct: 60 PTAEVGITRLFKNEILSYRDLPLKLYQIGPCFRYEA----RPRRGLGRVREFTQVDAEIF 115 Query: 290 TREEDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQ 344 E S E E +L AEEIL+ L L YRVV GDLG A KT DLE WL + Sbjct: 116 GTPEQSEEEDEELLKLAEEILQDLGLPYRVVLNTRGDLGGYASKTGDLEAWLPAE 170 |
Other tRNA synthetase sub-families are too dissimilar to be included. This domain is the core catalytic domain of tRNA synthetases and includes glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. Length = 170 |
>gnl|CDD|161864 TIGR00409, proS_fam_II, prolyl-tRNA synthetase, family II | Back alignment and domain information |
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Score = 51.7 bits (124), Expect = 4e-07 Identities = 43/152 (28%), Positives = 65/152 (42%), Gaps = 9/152 (5%) Query: 189 EHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTD--GR--WLIPTSEVSLTNLYSHEI 244 + G EV P L E +G+ + ++ D GR L PT E +T+L +EI Sbjct: 63 KDGAIEVLLPALQPAELWQESGRWDTYGPELLRLKDRKGREFVLGPTHEEVITDLARNEI 122 Query: 245 IESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSI-TREEDSFTEHERML 303 K LPL + FR E R G++R +F + S + EE +++M Sbjct: 123 KSYKQLPLNLYQIQTKFRDEI----RPRFGLMRGREFIMKDAYSFHSDEESLDATYQKMY 178 Query: 304 SCAEEILKRLDLHYRVVSLCTGDLGFSACKTY 335 I RL L +R V +G +G SA + Sbjct: 179 QAYSNIFSRLGLDFRPVQADSGAIGGSASHEF 210 |
Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi. Length = 568 |
>gnl|CDD|179183 PRK00960, PRK00960, seryl-tRNA synthetase; Provisional | Back alignment and domain information |
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Score = 45.8 bits (109), Expect = 2e-05 Identities = 45/217 (20%), Positives = 78/217 (35%), Gaps = 51/217 (23%) Query: 171 LAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQI------------PKFADD 218 + L RA + +I+ G+ E P L+ E MY + PK + Sbjct: 222 MTKLFRAFEKLVIEEVLKPLGFDECLFPKLIPLEVMYKMRYLEGLPEGMYYVCPPKRDPE 281 Query: 219 MFCTTDGRWLIPTSEVSLTNL----------------------YSHEIIESKSLPLR-FT 255 F ++ EV + L + E ++ LP++ F Sbjct: 282 YF-EEFVDEMMVKKEVPIEKLKEKLRDPGYVLAPAQCEPFYQFFQGETVDVDELPIKFFD 340 Query: 256 TLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDL 315 ++R E G A G+ R ++F + E+V + E + +L A + ++LDL Sbjct: 341 RSGWTYRWEGGGA----HGLERVNEFHRIEIVWLGTPEQVEEIRDELLKYAHILAEKLDL 396 Query: 316 HY-RVVS----------LCTGDLGFSACKTYDLEVWL 341 Y R V L + F Y++E+WL Sbjct: 397 EYWREVGDDPFYLEGRGLEDRGIEFPDVPKYEMELWL 433 |
Length = 517 |
>gnl|CDD|129509 TIGR00415, serS_MJ, seryl-tRNA synthetase, Methanococcus jannaschii family | Back alignment and domain information |
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Score = 42.6 bits (100), Expect = 2e-04 Identities = 41/180 (22%), Positives = 72/180 (40%), Gaps = 38/180 (21%) Query: 174 LERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMF-CTTDGR------ 226 L RAL +F I+ + G+ E P L+ + M + + M+ C R Sbjct: 225 LFRALEEFFIEEIVKKIGFQECLFPKLIPLDIMNKMRYLEGLPEGMYYCCAPKRDPELFE 284 Query: 227 ----WLIPTSEVSLTNL----------------------YSHEIIESKSLPLRFTTLAP- 259 LI E+ + L + E+I+++ P++F + Sbjct: 285 EFKNELIIKKEIPIDKLKNGIKDPGYVIAPAQCEPFYQFFEGEVIDAEDKPIKFFDRSGW 344 Query: 260 SFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLHYRV 319 ++R EAG A +G+ R H+F + E V I E++ ++ L AE+ LDL + Sbjct: 345 TYRWEAGGA----KGLDRVHEFLRVECVWIAEPEETEEIRDKTLELAEDAADELDLEWWT 400 |
The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases. Length = 520 |
>gnl|CDD|145510 pfam02403, Seryl_tRNA_N, Seryl-tRNA synthetase N-terminal domain | Back alignment and domain information |
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Score = 99 bits (250), Expect = 1e-21 Identities = 43/110 (39%), Positives = 66/110 (60%), Gaps = 3/110 (2%) Query: 1 MLDIQWIRQNPEHLDIALKKRHL-EPQSEYILSLDEKNRILIKKIEDIRARRNSNSAQIG 59 MLDI+ IR+NPE + L+KR + + +L LDE+ R L ++E+++A RN S +IG Sbjct: 1 MLDIKLIRENPEAVKEKLRKRGVDVLDVDELLELDEERRELQVELEELQAERNELSKEIG 60 Query: 60 QAIAEGNLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVP 109 +A + +AL E LK++L LE E E+ + L KL+ IPN+P Sbjct: 61 KAKKKK--EDAEALIAEVKELKDELKALEAELRELEAELDKLLLSIPNIP 108 |
This domain is found associated with the Pfam tRNA synthetase class II domain (pfam00587) and represents the N-terminal domain of seryl-tRNA synthetase. Length = 108 |
>gnl|CDD|29810 cd00670, Gly_His_Pro_Ser_Thr_tRS_core, Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain | Back alignment and domain information |
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Score = 93.8 bits (233), Expect = 8e-20 Identities = 58/240 (24%), Positives = 94/240 (39%), Gaps = 24/240 (10%) Query: 174 LERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTD-GRW----- 227 L RAL +F+ D E+GY E+ P L + G + + +M+ D GR Sbjct: 4 LWRALERFLDDRMA-EYGYQEILFPFLAPTVLFFKGGHLDGYRKEMYTFEDKGRELRDTD 62 Query: 228 --LIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCE 285 L P + + ++S EI+ ++LPLR + P FR E RG++R +F + E Sbjct: 63 LVLRPAACEPIYQIFSGEILSYRALPLRLDQIGPCFRHEPSGR----RGLMRVREFRQVE 118 Query: 286 LVSITREEDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSAC--------KTYDL 337 V E++ E L AEEI + L L RVV G + Sbjct: 119 YVVFGEPEEAEEERREWLELAEEIARELGLPVRVVVADDPFFGRGGKRGLDAGRETVVEF 178 Query: 338 EVWLAGQNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAIL 397 E+ L +E + S + + + + G+G R ++A+L Sbjct: 179 ELLLPLPGRAKETAVGSANVHLDHFGASF--KIDEDGGGRAHTGCGGAG-GEERLVLALL 235 |
This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.. Length = 235 |
>gnl|CDD|29813 cd00768, class_II_aaRS-like_core, Class II tRNA amino-acyl synthetase-like catalytic core domain | Back alignment and domain information |
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Score = 75.5 bits (185), Expect = 3e-14 Identities = 54/224 (24%), Positives = 91/224 (40%), Gaps = 30/224 (13%) Query: 174 LERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKF-------ADDMFCTTDGR 226 +E+ L +FM +E G+ EV P++ R+ + G PK ++ Sbjct: 5 IEQKLRRFM-----AELGFQEVETPIVEREPLLEKAGHEPKDLLPVGAENEEDLY----- 54 Query: 227 WLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCEL 286 L PT E L L+ I + LPLR + P+FR+E G RG+ R +F + E Sbjct: 55 -LRPTLEPGLVRLFVSHI---RKLPLRLAEIGPAFRNEGGR-----RGLRRVREFTQLEG 105 Query: 287 VSITREEDSFTEHERMLSCAEEILKRL--DLHYRVVSLCTGDLGFS-ACKTYDLEVWLAG 343 + + +E E ++ EE+L+ L L V G+ A +++EV Sbjct: 106 EVFGEDGEEASEFEELIELTEELLRALGIKLDIVFVEKTPGEFSPGGAGPGFEIEVDH-P 164 Query: 344 QNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGV 387 + EI S + Q+R + + D + G G+ Sbjct: 165 EGRGLEIGSGGYRQDEQARAADLYFLDEALEYRYPPTIGFGLGL 208 |
Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.. Length = 211 |
>gnl|CDD|30791 COG0442, ProS, Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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Score = 71.4 bits (175), Expect = 4e-13 Identities = 61/231 (26%), Positives = 99/231 (42%), Gaps = 17/231 (7%) Query: 189 EHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGR----WLIPTSEVSLTNLYSHEI 244 + G EV P L+ E +G+ F ++F D L PTSE +T+++ I Sbjct: 63 KIGAQEVLFPTLIPAELWKESGRWEGFGPELFRVKDRGDRPLALRPTSEEVITDMFRKWI 122 Query: 245 IESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQF-WKCELVSI-TREEDSFTEHERM 302 K LPL+ + FR E R G+LR +F K + S EED+ +E+M Sbjct: 123 RSYKDLPLKLYQIQSKFRDEK----RPRFGLLRGREFLMK-DAYSFHADEEDAEETYEKM 177 Query: 303 LSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCG-NFQS 361 L I RL L + V G +G +++ E L +I++ G NF+ Sbjct: 178 LDAYSRIFLRLPLIFGPVPADEGFIG--GSYSHEFEA-LMPDGGEDQIATSHHYGANFEK 234 Query: 362 RRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTV 412 ++ ++ D L++ HT S R + A + + + +G V P V Sbjct: 235 AFIDIKFEDEEEGELEYVHT--TSYGISTRIIGAAILIHGDNEGLVLPPIV 283 |
Length = 500 |
>gnl|CDD|73229 cd00779, ProRS_core_prok, Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
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Score = 64.4 bits (157), Expect = 6e-11 Identities = 55/221 (24%), Positives = 88/221 (39%), Gaps = 12/221 (5%) Query: 183 IDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGR----WLIPTSEVSLTN 238 I ++ G E+ P+L E +G+ + ++ D L PT E +T+ Sbjct: 41 IREEMNKIGAQEILMPILQPAELWKESGRWDAYGPELLRLKDRHGKEFLLGPTHEEVITD 100 Query: 239 LYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSI-TREEDSFT 297 L ++EI K LPL + FR E R G++R +F + S EE Sbjct: 101 LVANEIKSYKQLPLNLYQIQTKFRDEI----RPRFGLMRGREFLMKDAYSFDIDEESLEE 156 Query: 298 EHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCG 357 +E+M I KRL L + V +G +G S + + L E+ G Sbjct: 157 TYEKMYQAYSRIFKRLGLPFVKVEADSGAIGGSLSHEFHVLSPLKITKGI-EVGHIFQLG 215 Query: 358 NFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILE 398 S+ + + + D N K + G+ V R L AI+E Sbjct: 216 TKYSKALGATFLDENGKPKPL--EMGCYGIGVSRLLAAIIE 254 |
ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.. Length = 255 |
>gnl|CDD|37535 KOG2324, KOG2324, KOG2324, Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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Score = 51.1 bits (122), Expect = 6e-07 Identities = 62/283 (21%), Positives = 107/283 (37%), Gaps = 44/283 (15%) Query: 182 MIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGR----WLIPTSEVSLT 237 ++D G ++S P+L E TG+ ++F D + L PT E +T Sbjct: 61 LLDNEMQSGGAQKISLPILSSKELWEKTGRWDAMGSELFRLHDRKGKQMCLTPTHEEDIT 120 Query: 238 NLYSHEI-IESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSI-TREEDS 295 L + I + K LP+R + FR E G+LR +F ++ S + EE + Sbjct: 121 ALMATYIPLSYKQLPIRVYQIGRKFRDELRPRF----GLLRGREFLMKDMYSFDSDEETA 176 Query: 296 FTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYR------- 348 ++ + + I K+L L + V +GD+G + L + L Sbjct: 177 QQTYQLVDQAYDRIFKQLGLPFVKVWADSGDIGGEVSHEFHLIHPVGEDTLMSCPSCGYS 236 Query: 349 ------EISSCSTCGNFQSRRMNS--------------RYRDP-NSKSLKFTHT-----L 382 ++S ++C R+ +Y P N+K + + Sbjct: 237 KNSEDLDLSKIASCPKCNEGRLTKTKSIEVGHTFLLGTKYSKPLNAKFVNVEGKPEFLHM 296 Query: 383 NGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYMNNLAVIKK 425 G+ V R L A E L+ D + P+++ PY L KK Sbjct: 297 GCYGIGVTRLLAAAAE-VLSDDKGLRWPSLIAPYKVCLIGPKK 338 |
Length = 457 |
>gnl|CDD|58340 cd00772, ProRS_core, Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
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Score = 44.3 bits (104), Expect = 6e-05 Identities = 48/231 (20%), Positives = 85/231 (36%), Gaps = 18/231 (7%) Query: 180 QFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPK-FADDMFCTTDGR--------WLIP 230 + ++D EHG P + + + + F+ ++ D L P Sbjct: 39 ENVLDKMFKEHGAQNALFPFFILASFLEKEAEHDEGFSKELAVFKDAGDEELEEDFALRP 98 Query: 231 TSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQF-WKCELVSI 289 T E ++ + + I K LP + FR E R G LR +F K + Sbjct: 99 TLEENIGEIAAKFIKSWKDLPQHLNQIGNKFRDEI----RPRFGFLRAREFIMKDGHSAH 154 Query: 290 TREEDSFTEHERMLSCAEEILKRL-DLHYRVVSLCTGDLGFSACKTYDLEVWLA-GQNLY 347 E++ E MLS EI + L + + G A K+ + E + G+ Sbjct: 155 ADAEEADEEFLNMLSAYAEIARDLAAIDFIEGEADEGAKFAGASKSREFEALMEDGKAKQ 214 Query: 348 REISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILE 398 E G ++ + +++ D + K KF G+ + R + AI+E Sbjct: 215 AETGHIFGEGFARAFDLKAKFLDKDGK-EKFFEM-GCWGIGISRFIGAIIE 263 |
ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.. Length = 264 |
>gnl|CDD|30790 COG0441, ThrS, Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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Score = 49.5 bits (118), Expect = 2e-06 Identities = 42/198 (21%), Positives = 67/198 (33%), Gaps = 30/198 (15%) Query: 139 REHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAP 198 R+H ++G+ L L F G F G L ++ +GY EV P Sbjct: 190 RDHRKLGKELDLFSFSPEEG-PGLPFWHPKGATIR--NLLEDYVRTKL-RSYGYQEVKTP 245 Query: 199 LLVRDEAMYGTGQIPKFADDMFCTT-DGRWLI--PTSEVSLTNLYSHEIIESKSLPLRFT 255 +L E +G + +DMF T D R P + ++ + + LPLR Sbjct: 246 VLADLELWELSGHWDNYKEDMFLTESDDREYALKPMNCPGHILIFKSGLRSYRELPLRLA 305 Query: 256 TLAPSFR---SEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKR 312 +R S A RG + + F +++ +E Sbjct: 306 EFGYVYRYEKSGALHGLMRVRGFTQ-------------DDAHIFCTPDQI---KDEFKGI 349 Query: 313 LDLHYRVVSLCTGDLGFS 330 L+L V D GF+ Sbjct: 350 LELILEV----YKDFGFT 363 |
Length = 589 |
>gnl|CDD|29816 cd00771, ThrRS_core, Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain | Back alignment and domain information |
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Score = 48.6 bits (116), Expect = 3e-06 Identities = 45/213 (21%), Positives = 72/213 (33%), Gaps = 14/213 (6%) Query: 141 HFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLL 200 H +G L L F G F + G A + L F+ +L + GY EV P++ Sbjct: 2 HRRLGGELELFFFFDEAG-PGLPFWLPKG--AIIRNELEDFLRELQ-RKRGYQEVETPII 57 Query: 201 VRDEAMYGTGQIPKFADDMFCTTDGR---WLIPTSEVSLTNLYSHEIIESKSLPLRFTTL 257 E +G + ++MF + L P + ++ + + LPLR Sbjct: 58 YNKELWETSGHWDHYRENMFPFEEEDEEYGLKPMNCPGHCLIFKSKPRSYRDLPLRLAEF 117 Query: 258 APSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLHY 317 R E A G+ R F + + + E + +L +E+ Sbjct: 118 GTVHRYEQSGA---LHGLTRVRGFTQDDAHIFCTPDQIKEEIKGVLDLIKEVYSDFGFFD 174 Query: 318 RVVSLCTGDLGFSACKTYDLEVWLAGQNLYREI 350 V L T F EVW + RE Sbjct: 175 YKVELSTRPEKFIG----SDEVWEKAEAALREA 203 |
ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.. Length = 298 |
>gnl|CDD|161870 TIGR00418, thrS, threonyl-tRNA synthetase | Back alignment and domain information |
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Score = 48.9 bits (117), Expect = 3e-06 Identities = 38/195 (19%), Positives = 66/195 (33%), Gaps = 11/195 (5%) Query: 136 HLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEV 195 R+H ++G+ L L F+ G A + L F+ GY EV Sbjct: 167 AKKRDHRKLGKELELFSFEPE---IGPGLPFWLPKGATIRNLLEDFVRQKQIKY-GYMEV 222 Query: 196 SAPLLVRDEAMYGTGQIPKFADDMFCTTDGRW----LIPTSEVSLTNLYSHEIIESKSLP 251 P++ E +G + + MF T+ L P + ++ + + LP Sbjct: 223 ETPIMYDLELWEISGHWDNYKERMFPFTELDNREFMLKPMNCPGHFLIFKSSLRSYRDLP 282 Query: 252 LRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILK 311 LR L S R E G++R F + + E+ E + +++ Sbjct: 283 LRIAELGYSHRYEQSGE---LHGLMRVRGFTQDDAHIFCTEDQIKEEFKNQFRLIQKVYS 339 Query: 312 RLDLHYRVVSLCTGD 326 + L T D Sbjct: 340 DFGFSFDKYELSTRD 354 |
This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether.. Length = 563 |
>gnl|CDD|29823 cd00778, ProRS_core_arch_euk, Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
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Score = 40.5 bits (95), Expect = 0.001 Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 14/135 (10%) Query: 189 EHGYTEVSAPLLV-RDEAMYGTGQIPKFADDMFCTTDGR--------WLIPTSEVSLTNL 239 E G+ V PLL+ E I FA ++ T G L PTSE ++ + Sbjct: 48 ETGHENVYFPLLIPESELEKEKEHIEGFAPEVAWVTHGGLEELEEPLALRPTSETAIYPM 107 Query: 240 YSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQF-WKCELVSITREEDSFTE 298 +S I + LPL+ FR E + TR LR +F W+ + EE++ E Sbjct: 108 FSKWIRSYRDLPLKINQWVNVFRWET----KTTRPFLRTREFLWQEGHTAHATEEEAEEE 163 Query: 299 HERMLSCAEEILKRL 313 ++L +E + L Sbjct: 164 VLQILDLYKEFYEDL 178 |
ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.. Length = 261 |
Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 430 | seryl-tRNA synthetase [Candidatus Liberibacter asiaticu | ||
PRK05431 | 422 | seryl-tRNA synthetase; Provisional | 100.0 | |
COG0172 | 429 | SerS Seryl-tRNA synthetase [Translation, ribosomal stru | 100.0 | |
KOG2509 | 455 | consensus | 100.0 | |
TIGR00414 | 460 | serS seryl-tRNA synthetase; InterPro: IPR002317 The ami | 100.0 | |
cd00770 | 297 | SerRS_core Seryl-tRNA synthetase (SerRS) class II core | 100.0 | |
cd00779 | 255 | ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II | 100.0 | |
cd00771 | 298 | ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II co | 99.97 | |
cd00772 | 264 | ProRS_core Prolyl-tRNA synthetase (ProRS) class II core | 99.93 | |
cd00778 | 261 | ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) clas | 99.89 | |
PRK12325 | 438 | prolyl-tRNA synthetase; Provisional | 99.89 | |
PRK12305 | 576 | thrS threonyl-tRNA synthetase; Reviewed | 99.88 | |
PRK12444 | 639 | threonyl-tRNA synthetase; Reviewed | 99.87 | |
PRK03772 | 642 | threonyl-tRNA synthetase; Validated | 99.87 | |
PRK00413 | 639 | thrS threonyl-tRNA synthetase; Reviewed | 99.86 | |
PRK04483 | 634 | threonyl-tRNA synthetase; Validated | 99.86 | |
PRK03991 | 613 | threonyl-tRNA synthetase; Validated | 99.85 | |
PRK12304 | 604 | thrS threonyl-tRNA synthetase; Reviewed | 99.85 | |
COG0441 | 589 | ThrS Threonyl-tRNA synthetase [Translation, ribosomal s | 99.73 | |
PRK08661 | 478 | prolyl-tRNA synthetase; Provisional | 99.71 | |
COG0442 | 500 | ProS Prolyl-tRNA synthetase [Translation, ribosomal str | 99.69 | |
KOG2324 | 457 | consensus | 99.61 | |
PRK00960 | 516 | seryl-tRNA synthetase; Provisional | 99.59 | |
KOG1637 | 560 | consensus | 99.55 | |
TIGR00408 | 533 | proS_fam_I prolyl-tRNA synthetase; InterPro: IPR004499 | 99.29 | |
TIGR00415 | 520 | serS_MJ seryl-tRNA synthetase; InterPro: IPR004503 The | 98.99 | |
KOG4163 | 551 | consensus | 97.7 | |
cd00670 | 235 | Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA s | 100.0 | |
cd00768 | 211 | class_II_aaRS-like_core Class II tRNA amino-acyl synthe | 100.0 | |
PRK04173 | 460 | glycyl-tRNA synthetase; Provisional | 99.39 | |
TIGR00409 | 620 | proS_fam_II prolyl-tRNA synthetase; InterPro: IPR004500 | 99.07 | |
COG0423 | 558 | GRS1 Glycyl-tRNA synthetase (class II) [Translation, ri | 99.04 | |
PRK09537 | 420 | pylS pyrolysyl-tRNA synthetase; Reviewed | 98.26 | |
COG0016 | 335 | PheS Phenylalanyl-tRNA synthetase alpha subunit [Transl | 97.99 | |
pfam01409 | 243 | tRNA-synt_2d tRNA synthetases class II core domain (F). | 97.37 | |
PRK00488 | 338 | pheS phenylalanyl-tRNA synthetase subunit alpha; Valida | 97.27 | |
cd00496 | 218 | PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) a | 97.23 | |
PRK07080 | 318 | hypothetical protein; Validated | 97.11 | |
PRK04172 | 501 | pheS phenylalanyl-tRNA synthetase subunit alpha; Provis | 96.77 | |
PTZ00326 | 505 | phenylalanyl-tRNA synthetase; Provisional | 96.0 | |
pfam00587 | 170 | tRNA-synt_2b tRNA synthetase class II core domain (G, H | 100.0 | |
PRK00037 | 417 | hisS histidyl-tRNA synthetase; Reviewed | 98.66 | |
cd00774 | 254 | GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like cla | 98.42 | |
TIGR02367 | 453 | PylS pyrrolysyl-tRNA synthetase; InterPro: IPR012739 Py | 98.4 | |
COG0124 | 429 | HisS Histidyl-tRNA synthetase [Translation, ribosomal s | 97.85 | |
TIGR00389 | 606 | glyS_dimeric glycyl-tRNA synthetase; InterPro: IPR00231 | 97.78 | |
PRK12293 | 281 | hisZ ATP phosphoribosyltransferase regulatory subunit; | 97.5 | |
PRK12295 | 373 | hisZ ATP phosphoribosyltransferase regulatory subunit; | 97.39 | |
PRK12421 | 391 | ATP phosphoribosyltransferase regulatory subunit; Provi | 96.69 | |
TIGR00442 | 446 | hisS histidyl-tRNA synthetase; InterPro: IPR015807 The | 96.23 | |
TIGR00457 | 495 | asnS asparaginyl-tRNA synthetase; InterPro: IPR004522 T | 95.67 | |
TIGR00418 | 595 | thrS threonyl-tRNA synthetase; InterPro: IPR002320 The | 99.82 | |
pfam02403 | 108 | Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain. T | 99.82 | |
TIGR00019 | 373 | prfA peptide chain release factor 1; InterPro: IPR00437 | 95.64 | |
TIGR03185 | 650 | DNA_S_dndD DNA sulfur modification protein DndD. This m | 93.41 | |
pfam07106 | 169 | TBPIP Tat binding protein 1(TBP-1)-interacting protein | 92.99 | |
PRK00591 | 360 | prfA peptide chain release factor 1; Validated | 92.86 | |
TIGR02231 | 558 | TIGR02231 conserved hypothetical protein; InterPro: IPR | 92.05 | |
PRK09194 | 570 | prolyl-tRNA synthetase; Provisional | 99.8 | |
PRK00476 | 587 | aspS aspartyl-tRNA synthetase; Validated | 97.2 | |
COG0173 | 585 | AspS Aspartyl-tRNA synthetase [Translation, ribosomal s | 96.04 | |
PRK12420 | 421 | histidyl-tRNA synthetase; Provisional | 98.0 | |
CHL00201 | 424 | syh histidine-tRNA synthetase; Provisional | 97.75 | |
PRK12292 | 388 | hisZ ATP phosphoribosyltransferase regulatory subunit; | 97.73 | |
cd00773 | 261 | HisRS-like_core Class II Histidinyl-tRNA synthetase (Hi | 97.48 | |
PRK05159 | 434 | aspC aspartyl-tRNA synthetase; Provisional | 97.11 | |
PRK03932 | 462 | asnC asparaginyl-tRNA synthetase; Validated | 97.1 | |
PRK09350 | 325 | lysyl-tRNA synthetase; Provisional | 96.85 | |
cd00775 | 329 | LysRS_core Lys_tRNA synthetase (LysRS) class II core do | 96.78 | |
PRK00484 | 491 | lysS lysyl-tRNA synthetase; Reviewed | 96.62 | |
cd00776 | 322 | AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II c | 96.55 | |
PRK06462 | 332 | asparagine synthetase A; Reviewed | 96.37 | |
cd00777 | 280 | AspRS_core Asp tRNA synthetase (aspRS) class II core do | 96.33 | |
PRK12820 | 706 | bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl | 95.9 | |
PRK12445 | 505 | lysyl-tRNA synthetase; Reviewed | 95.23 | |
pfam00152 | 341 | tRNA-synt_2 tRNA synthetases class II (D, K and N). | 95.2 | |
PRK02983 | 1099 | lysS lysyl-tRNA synthetase; Provisional | 95.11 | |
COG3705 | 390 | HisZ ATP phosphoribosyltransferase involved in histidin | 92.03 | |
COG0017 | 435 | AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation | 96.54 | |
PRK06253 | 527 | O-phosphoseryl-tRNA synthetase; Reviewed | 96.25 | |
TIGR00468 | 362 | pheS phenylalanyl-tRNA synthetase, alpha subunit; Inter | 92.95 | |
cd00669 | 269 | Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class I | 96.23 | |
KOG0555 | 545 | consensus | 95.26 | |
KOG2298 | 599 | consensus | 95.03 | |
PRK00226 | 157 | greA transcription elongation factor GreA; Reviewed | 93.57 | |
COG3883 | 265 | Uncharacterized protein conserved in bacteria [Function | 92.34 | |
pfam03961 | 450 | DUF342 Protein of unknown function (DUF342). This famil | 92.06 | |
TIGR00409 | 620 | proS_fam_II prolyl-tRNA synthetase; InterPro: IPR004500 | 91.27 | |
PRK11637 | 404 | hypothetical protein; Provisional | 90.29 |
>PRK05431 seryl-tRNA synthetase; Provisional | Back alignment and domain information |
---|
Probab=100.00 E-value=0 Score=1283.05 Aligned_cols=421 Identities=55% Similarity=0.894 Sum_probs=412.5 Q ss_pred CCCHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH Q ss_conf 98844785199999999984698958899999999999999999999999999999999986449987999999999999 Q gi|254780680|r 1 MLDIQWIRQNPEHLDIALKKRHLEPQSEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQAIAEGNLSLVDALKNETSTL 80 (430) Q Consensus 1 MLDik~IRen~e~v~~~l~~R~~~~~id~il~Ld~~rr~l~~e~e~LraerN~lSKeIg~~k~~~~~~~~~~Lk~e~~~L 80 (430) T Consensus 1 MLDik~IReNpe~v~~~lkkR~~~~~id~il~lD~~rr~l~~e~e~Lr~erN~iSK~Ig~~kk~g~--~~~~l~~~~~~l 78 (422) T PRK05431 1 MLDIKLIRENPDAVKEKLAKRGDPLDVDELLELDEERRELQTETEELQAERNALSKEIGQAKAKGE--DAEELIAEVKEL 78 (422) T ss_pred CCCHHHHHHCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHH T ss_conf 988789874999999999865984519999999999999999999999999999999999874897--799999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHC Q ss_conf 98864446666677888774431002258811221135554024200015656656662112202211731000112221 Q gi|254780680|r 81 KEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTSANENILIRSVGKKPSAIHLSREHFEIGEALGLMDFDRATKLS 160 (430) Q Consensus 81 k~eik~le~~~~~le~el~~lll~IPNi~~~~VP~G~de~dNv~i~~~G~~~~f~f~~k~H~elge~l~liDfe~a~kvs 160 (430) T Consensus 79 k~~i~~le~~~~~~~~~l~~~ll~IPNi~~~~VP~G~dE~dNv~I~~~G~~~~f~f~~k~H~elge~l~liDfe~aaKiS 158 (422) T PRK05431 79 KEEIKALEAELKELEAELEELLLSIPNLPHDSVPVGKDEDDNVEVRRWGEPREFDFEPKDHWELGEKLGILDFERAAKVS 158 (422) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHC T ss_conf 99999999999999999999998489988865788998302255420377444567887788998764761046677550 Q ss_pred CCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHH-HCCEECCCCCCHHHHH Q ss_conf 675301056488999999999998622320320212356202788986551422476776431-0002313454114544 Q gi|254780680|r 161 GARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTT-DGRWLIPTSEVSLTNL 239 (430) Q Consensus 161 GsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~-d~l~Li~TaEvpL~~~ 239 (430) T Consensus 159 GsRF~~Lkg~~A~LerALi~f~ld~~~-~~Gy~~v~~P~lv~~~~~~gtGqlPkfe~~~Y~i~~~dl~Li~TAEvpL~~~ 237 (422) T PRK05431 159 GSRFYVLKGDGARLERALIQFMLDLHT-EEGYTEVIPPYLVNEESMYGTGQLPKFEEDLFKIEDDDLYLIPTAEVPLTNL 237 (422) T ss_pred CCCEEEEHHHHHHHHHHHHHHHHHHHH-HCCCEEEECHHHHHHHHHHHHCCCCCCHHHHHHHCCCCEEEECCCCCCHHHH T ss_conf 787046004899999999999999999-8799799673763678874453797448775410588717605653212334 Q ss_pred HHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCHHHH Q ss_conf 53420595550420885322107884335543432122221020021212786501457898999999999984106753 Q gi|254780680|r 240 YSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLHYRV 319 (430) Q Consensus 240 ~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~lpyRv 319 (430) T Consensus 238 ~~~eil~~~~LPik~~~~S~CFR~EAGs~GkdtrGl~RvHQF~KVE~f~~~~pe~S~~~~e~~~~~~e~i~~~L~lpyrv 317 (422) T PRK05431 238 HRDEILDEEELPIKYTAYSPCFRSEAGSAGRDTRGLIRQHQFDKVELVKFTKPEDSYAELEELTGNAEEILQKLELPYRV 317 (422) T ss_pred HHCCCCCHHHCCHHHEEECCHHHHCCCCCCCCCCCCEEEEEECEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCC T ss_conf 40113365439844527883653031336755676124430000343353586779999999999999999875985023 Q ss_pred CCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCCEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHH Q ss_conf 03780117844340241011010048332375310210076453268473389984101042004322899999999883 Q gi|254780680|r 320 VSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILEN 399 (430) Q Consensus 320 v~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~~~~~htlNgt~~A~~R~l~ailEn 399 (430) T Consensus 318 v~~~sgdlg~~a~~~yDiE~W~P~~~~y~EvsS~Snc~d~QsrRl~iry~~~~~~-~~~~htlNgt~~A~~R~l~ailEn 396 (422) T PRK05431 318 VLLCTGDMGFSAAKTYDLEVWLPGQNTYREISSCSNCTDFQARRANIRYRDEDGK-PELVHTLNGSGLAVGRTLVAILEN 396 (422) T ss_pred CCCCCCCCCHHHHHHEEEEEEECCCCCEEEEEEECCCCHHHHHHCCCEEECCCCC-EEEEEECCCCHHHHHHHHHHHHHH T ss_conf 5678765576656545457871566854524000150148875302655179998-664043115121887899999884 Q ss_pred CCCCCCCEECCCCCCCCCCCEEEECC Q ss_conf 46899838658222310188013073 Q gi|254780680|r 400 YLNADGSVTIPTVLRPYMNNLAVIKK 425 (430) Q Consensus 400 ~q~~dg~i~iP~~L~pym~g~~~i~~ 425 (430) T Consensus 397 ~q~~dg~i~iP~~L~~y~~~~~~i~~ 422 (422) T PRK05431 397 YQQADGSVTIPEVLRPYMGGLEIIPK 422 (422) T ss_pred CCCCCCCEECCHHHHHHCCCCEECCC T ss_conf 64899888478131201698830889 |
|
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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Probab=100.00 E-value=0 Score=1155.78 Aligned_cols=424 Identities=53% Similarity=0.872 Sum_probs=410.5 Q ss_pred CCCHHHHHCCHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH Q ss_conf 988447851999999999846989-5889999999999999999999999999999999998644998799999999999 Q gi|254780680|r 1 MLDIQWIRQNPEHLDIALKKRHLE-PQSEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQAIAEGNLSLVDALKNETST 79 (430) Q Consensus 1 MLDik~IRen~e~v~~~l~~R~~~-~~id~il~Ld~~rr~l~~e~e~LraerN~lSKeIg~~k~~~~~~~~~~Lk~e~~~ 79 (430) T Consensus 1 mld~k~ir~n~d~v~~~l~~r~~~~~~~~~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~-~~~~l~~e~~~ 79 (429) T COG0172 1 MLDLKLIRENPDAVREKLKKRGGDALDVDKLLELDEERRKLLRELEELQAERNELSKEIGRALKRGED-DAEELIAEVKE 79 (429) T ss_pred CCHHHHHHHCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHH T ss_conf 96487765099999998763488376789999999999999999999999988999999987632621-48999998898 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCEEEEEECCCCC--CCCCCCCCCCHHHHCCCCCHHHHH Q ss_conf 998864446666677888774431002258811221135554024200015656--656662112202211731000112 Q gi|254780680|r 80 LKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTSANENILIRSVGKKPS--AIHLSREHFEIGEALGLMDFDRAT 157 (430) Q Consensus 80 Lk~eik~le~~~~~le~el~~lll~IPNi~~~~VP~G~de~dNv~i~~~G~~~~--f~f~~k~H~elge~l~liDfe~a~ 157 (430) T Consensus 80 l~~~l~~~e~~~~~~~~el~~~ll~ipNi~~~~VPvg~de~~n~~vr~~g~~~~~~~~f~pk~H~~lge~l~~~Df~~aa 159 (429) T COG0172 80 LKEKLKELEAALDELEAELDTLLLTIPNIPHESVPVGKDEDDNVEVRRWGEPPVFVFDFEPKDHVELGEKLGLLDFERAA 159 (429) T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHCCCCHHHHHC T ss_conf 88998724377999999999999709999865668688865654889973376544467853099876542762456650 Q ss_pred HHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHHH-CCEECCCCCCHH Q ss_conf 2216753010564889999999999986223203202123562027889865514224767764310-002313454114 Q gi|254780680|r 158 KLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTD-GRWLIPTSEVSL 236 (430) Q Consensus 158 kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~d-~l~Li~TaEvpL 236 (430) T Consensus 160 KvsGsrf~~~~~~~a~L~rAL~~f~ld~~~-~~Gf~e~~~P~lv~~e~m~gtgqlpkf~e~~y~v~~~~~~LipTaEvpl 238 (429) T COG0172 160 KVSGSRFYFYKGKGARLERALIQFMLDLHT-KHGFTEVLPPYLVNLESMFGTGQLPKFEEDLYKVEDPDLYLIPTAEVPL 238 (429) T ss_pred CCCCCCEEEECCHHHHHHHHHHHHHHHHHH-HCCCEEEECCEEECHHHHHCCCCCCCCCCCCEEECCCCEEEEECCHHHH T ss_conf 207874389807789999999999999998-7696586576060598862237898880121584589879970202156 Q ss_pred HHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCH Q ss_conf 54453420595550420885322107884335543432122221020021212786501457898999999999984106 Q gi|254780680|r 237 TNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLH 316 (430) Q Consensus 237 ~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~lp 316 (430) T Consensus 239 ~~l~~~Eil~~~~LP~k~~~~S~cFR~EAGs~GrdtrGliRvHQF~KVE~v~~~~Pe~S~~~~E~m~~~ae~il~~LeLP 318 (429) T COG0172 239 TNLHRDEILDEEDLPIKYTAYSPCFRSEAGSAGKDTRGLIRVHQFDKVELVVITKPEESEEELEEMLGNAEEVLQELELP 318 (429) T ss_pred HHHHCCCCCCCCCCCEEEEEECHHHHCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 78651620152127802678772542145656643553014664355899997070116999999999999999970898 Q ss_pred HHHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCCEEECCCCCCCCEEEEECCCHHHHHHHHHHH Q ss_conf 75303780117844340241011010048332375310210076453268473389984101042004322899999999 Q gi|254780680|r 317 YRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAI 396 (430) Q Consensus 317 yRvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~~~~~htlNgt~~A~~R~l~ai 396 (430) T Consensus 319 yRvv~lctGDlgf~a~kkYDlEvWlP~q~~yrEisScSnc~DfQaRR~~~Ryr~~~~~k~~~vhTLNGsglA~~R~l~Ai 398 (429) T COG0172 319 YRVVNLCTGDLGFSAAKKYDLEVWLPGQNKYREISSCSNCTDFQARRLNIRYRDKEEGKREFVHTLNGSGLAVGRTLVAI 398 (429) T ss_pred CEEEEECCCCCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH T ss_conf 36843256776886467323799853778740212443454288898754056365799669995464277999999999 Q ss_pred HHHCCCCCCCEECCCCCCCCCCCEEEECCC Q ss_conf 883468998386582223101880130733 Q gi|254780680|r 397 LENYLNADGSVTIPTVLRPYMNNLAVIKKE 426 (430) Q Consensus 397 lEn~q~~dg~i~iP~~L~pym~g~~~i~~~ 426 (430) T Consensus 399 lENyq~~dG~v~IPevL~~y~gg~~~i~~~ 428 (429) T COG0172 399 LENYQQEDGSVKIPEVLRPYMGGLEIIPKP 428 (429) T ss_pred HHCCCCCCCCEECCHHHHHHCCCCEECCCC T ss_conf 971537899863447887327853005899 |
|
>KOG2509 consensus | Back alignment and domain information |
---|
Probab=100.00 E-value=0 Score=1032.24 Aligned_cols=423 Identities=36% Similarity=0.598 Sum_probs=388.7 Q ss_pred CCCHHHHHC----CHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH-- Q ss_conf 988447851----99999999984698958-89999999999999999999999999999999998644998799999-- Q gi|254780680|r 1 MLDIQWIRQ----NPEHLDIALKKRHLEPQ-SEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQAIAEGNLSLVDAL-- 73 (430) Q Consensus 1 MLDik~IRe----n~e~v~~~l~~R~~~~~-id~il~Ld~~rr~l~~e~e~LraerN~lSKeIg~~k~~~~~~~~~~L-- 73 (430) T Consensus 2 ~L~~~lf~~~~g~~p~~ir~~q~~r~~d~~~v~~~i~~d~~w~~~~~~ldeln~~~n~l~k~i~~~k~kk-ke~~~~l~~ 80 (455) T KOG2509 2 MLDIRLFRTRKGGNPELIRESQKKRFQDVEAVDEVIELDKEWIETRFELDELNKEKNKLNKEIGDLKLKK-KEDIGQLEE 80 (455) T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHH T ss_conf 3000030346799867899989875047888998875036776566878888888877666766788764-021257777 Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCHHH Q ss_conf -------9999999988644466666778887744310022588112211355540242000156566566621122022 Q gi|254780680|r 74 -------KNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTSANENILIRSVGKKPSAIHLSREHFEIGE 146 (430) Q Consensus 74 -------k~e~~~Lk~eik~le~~~~~le~el~~lll~IPNi~~~~VP~G~de~dNv~i~~~G~~~~f~f~~k~H~elge 146 (430) T Consensus 81 ~~~~~~~~~~~~~l~e~~~~~~~~~~~l~~el~~~~~~ipN~~hpsVpv~~ee~~~~v-~~~~~~~~~~~~~~~~~~l~~ 159 (455) T KOG2509 81 SKAKNTEGAERKLLKEEAVELEEDESKLEDELYEVLLQIPNITHPSVPVSNEEQANVV-QRVGGPLEFEFKLSHHDELVR 159 (455) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH-HHHCCCCCCCCCCCCHHHHHH T ss_conf 6667655666554578877667899999999999998687767899777832352688-886387530246653889998 Q ss_pred HCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHHH-- Q ss_conf 117310001122216753010564889999999999986223203202123562027889865514224767764310-- Q gi|254780680|r 147 ALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTD-- 224 (430) Q Consensus 147 ~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~d-- 224 (430) T Consensus 160 ~~~~~~~~~~a~vsG~r~Yyl~g~~a~LeqALi~yal~~-l~~kGy~pl~~P~i~rkeVm~~cg~~~~~d~~~~y~ld~~ 238 (455) T KOG2509 160 ALGFIDLERGAKVSGHRGYYLKGAGAFLEQALINYALDF-LNAKGYTPLTTPDILRKEVMQKCGQLPRFDEEQYYVLDGG 238 (455) T ss_pred HCCCCCCCCHHHCCCCCCEEECCHHHHHHHHHHHHHHHH-HHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCC T ss_conf 606634000100146651587577999999999999999-9976982466814536999998565767883217860688 Q ss_pred -CCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHH Q ss_conf -0023134541145445342059555042088532210788433554343212222102002121278650145789899 Q gi|254780680|r 225 -GRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERML 303 (430) Q Consensus 225 -~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~ 303 (430) T Consensus 239 ~~~~LiaTaE~plAa~~~~e~~~~~~lPiK~vg~S~CfR~EaGs~G~d~~GlyRVHqF~KVE~Fvit~Pe~S~~~~eEmi 318 (455) T KOG2509 239 DEKYLIATAEQPLAAYHRDEWLEEDQLPIKYVGVSRCFRAEAGSHGKDTKGLYRVHQFEKVEQFVITGPEDSWEMLEEMI 318 (455) T ss_pred CCCEEEEECCCHHHHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHCCCCCCCCEEEEEEEEEEEEEECCCCHHHHHHHHHH T ss_conf 64226762111066650364036112760134303788877600465455514665200257888658535699999999 Q ss_pred HHHHHHHHHHCCHHHHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCCEEEC--CCCCCCCEEEE Q ss_conf 9999999984106753037801178443402410110100483323753102100764532684733--89984101042 Q gi|254780680|r 304 SCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYRD--PNSKSLKFTHT 381 (430) Q Consensus 304 ~~~~~i~~~L~lpyRvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry~~--~~~~~~~~~ht 381 (430) T Consensus 319 ~~~eef~qsLgip~rvl~m~S~eLg~aAakKyDiEAWmPgrg~ygEl~ScSNCTDyQSRRL~IRy~~~k~~~~~~~yvHt 398 (455) T KOG2509 319 NNQEEFYQSLGLPYRVLNMPSGELGAAAAKKYDIEAWMPGRGAYGELVSCSNCTDYQSRRLGIRYGQKKTNDGEKKYVHT 398 (455) T ss_pred HHHHHHHHHHCCCEEEECCCCHHHCCHHHHHCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEE T ss_conf 99999999809960673477423376777512666526765532330101465257776542020523246775415543 Q ss_pred ECCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCEEEECCCC Q ss_conf 0043228999999998834689983865822231018801307334 Q gi|254780680|r 382 LNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYMNNLAVIKKEH 427 (430) Q Consensus 382 lNgt~~A~~R~l~ailEn~q~~dg~i~iP~~L~pym~g~~~i~~~~ 427 (430) T Consensus 399 LN~TacA~~R~l~aiLEnyQ~edG-i~VPe~Lr~ym~~~~~ip~~k 443 (455) T KOG2509 399 LNGTACATPRALCAILENYQTEDG-IEVPEVLRPYMGGQEFIPFVK 443 (455) T ss_pred CCHHHHHHHHHHHHHHHHCCCCCC-CCCCHHHHHHCCCCCCCCCCC T ss_conf 040667646788776753467788-167776774068864021246 |
|
>TIGR00414 serS seryl-tRNA synthetase; InterPro: IPR002317 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
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Probab=100.00 E-value=0 Score=765.36 Aligned_cols=417 Identities=49% Similarity=0.835 Sum_probs=401.1 Q ss_pred CCCH---HHHHCCHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH--HHHCCCHHHHH Q ss_conf 9884---478519999999998469895--88999999999999999999999--999999999999--86449987999 Q gi|254780680|r 1 MLDI---QWIRQNPEHLDIALKKRHLEP--QSEYILSLDEKNRILIKKIEDIR--ARRNSNSAQIGQ--AIAEGNLSLVD 71 (430) Q Consensus 1 MLDi---k~IRen~e~v~~~l~~R~~~~--~id~il~Ld~~rr~l~~e~e~Lr--aerN~lSKeIg~--~k~~~~~~~~~ 71 (430) T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (460) T TIGR00414 1 MLDLRLLKLLRNNPDLVKESLKARGLSLDIDLEKLIALDDKRKKLLSELEELNLLAKRNELSKEIGKKLKKGEKKDKLIE 80 (460) T ss_pred CCCHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 95446788741367888988875111124457788888889998887777888888776668888888764210111124 Q ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC------CCCHHHHCCCCCCCE--------EEEEECCC--C Q ss_conf 9---999999999886444666667788877443100225------881122113555402--------42000156--5 Q gi|254780680|r 72 A---LKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNV------PLEEVPIGTSANENI--------LIRSVGKK--P 132 (430) Q Consensus 72 ~---Lk~e~~~Lk~eik~le~~~~~le~el~~lll~IPNi------~~~~VP~G~de~dNv--------~i~~~G~~--~ 132 (430) T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~g~~~~~~~~~~~w~~~~~~~~~~~~~~ 160 (460) T TIGR00414 81 EGKALKKELKELKEELTELEAALKALEEELEDLLLSIPNLKKKILEPHESVPVGKDEEDNLPVKYWYDEEVKKWGTPPLP 160 (460) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCEEHHHHHHHHHHHHCCCCC T ss_conf 67899998876778888876778889999888875234024555301444567887544520001001356664100122 Q ss_pred CCCCCCC--CCCCHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHH Q ss_conf 6656662--11220221173100011222167530105648899999999999862232032021235620278898655 Q gi|254780680|r 133 SAIHLSR--EHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTG 210 (430) Q Consensus 133 ~f~f~~k--~H~elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG 210 (430) T Consensus 161 ~~~~~~~~~~h~~~~~~~~~~d~~~~~~~~g~~~~~~~~~~~~~~~al~~~~l~~~~~~~g~~~~~~p~~~~~~~~~~~g 240 (460) T TIGR00414 161 SFDFKPKDLPHWELGEKLGLLDFERAVKLAGSRFYYLKGDGAKLERALINFMLDLLREKNGYSELYPPYLVNEELLDGTG 240 (460) T ss_pred CCCCCCCCCHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHCC T ss_conf 00133111215678877065101333344101012132136789999999999864432264010140354234431024 Q ss_pred ---HCHHHHHHHHHHHH-C---CEECCCCCCHHHHHHHHHCCCH--HHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEE Q ss_conf ---14224767764310-0---0231345411454453420595--5504208853221078843355434321222210 Q gi|254780680|r 211 ---QIPKFADDMFCTTD-G---RWLIPTSEVSLTNLYSHEIIES--KSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQF 281 (430) Q Consensus 211 ---~lp~f~~~~y~~~d-~---l~Li~TaEvpL~~~~~~~~l~~--~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF 281 (430) T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~l~~t~e~~~~~~~~~~~~~~~~~~lp~~~~~~~~cfr~eag~~g~~~~g~~r~h~f 320 (460) T TIGR00414 241 FNPQLPKFEEDLFKLEDTDDEKLYLIPTAEVPLTNLHRDEILDLPSEELPIKYTGYSPCFRSEAGSYGKDTKGLIRVHQF 320 (460) T ss_pred CCCCCCCHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCEEHCCCCHHHHHHCCCCCCCCHHHHHHHHC T ss_conf 56556530234432126777504652010001222220001026521034000002202333213455410001211100 Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCCHHHEEEEEEEECCCCC--CEEEEEEECCCCCH Q ss_conf 2002121278650145789899999999998410675303780117844340241011010048--33237531021007 Q gi|254780680|r 282 WKCELVSITREEDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQN--LYREISSCSTCGNF 359 (430) Q Consensus 282 ~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~~a~~~~DiE~w~P~~~--~y~Ev~S~Snc~D~ 359 (430) T Consensus 321 ~k~e~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~gd~g~~~~~~yd~e~W~p~~~gg~y~e~~~~~~~~d~ 400 (460) T TIGR00414 321 NKVELVKFCKPEESWEELEELLSDAEKILQELELPYRVLNLCTGDLGFGAAKKYDLEVWLPGQNGGTYREISSCSNCTDF 400 (460) T ss_pred CCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCHHHHEECCCCCCCCCCCCEEEEEEEECCCCCCCCEECCCCCCHHH T ss_conf 31024566354014899999987899999974375111000124346420110100134104678741100012331145 Q ss_pred HHHHCCCEEECCCCCC--CCEEEEECCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCC Q ss_conf 6453268473389984--101042004322899999999883468998386582223101 Q gi|254780680|r 360 QSRRMNSRYRDPNSKS--LKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYM 417 (430) Q Consensus 360 QsrRl~iry~~~~~~~--~~~~htlNgt~~A~~R~l~ailEn~q~~dg~i~iP~~L~pym 417 (430) T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~lng~~~~~~r~~~~~~en~~~~~g~~~~p~~l~~~~ 460 (460) T TIGR00414 401 QARRLNIRYKDKGGGKRENEYVHTLNGTALAVGRTLVAILENYQDEDGSVEVPEVLRKYL 460 (460) T ss_pred HHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCEECHHHHHCCC T ss_conf 666544333220366532100010033123456788877764105577454125541139 |
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa .; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm. |
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain | Back alignment and domain information |
---|
Probab=100.00 E-value=0 Score=908.35 Aligned_cols=296 Identities=51% Similarity=0.878 Sum_probs=291.0 Q ss_pred CCEEEEEECCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHH Q ss_conf 40242000156566566621122022117310001122216753010564889999999999986223203202123562 Q gi|254780680|r 121 ENILIRSVGKKPSAIHLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLL 200 (430) Q Consensus 121 dNv~i~~~G~~~~f~f~~k~H~elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~l 200 (430) T Consensus 1 ~n~~v~~~G~~~~f~f~~rdH~~Lg~~L~L~dfe~~akvsG~rf~~l~g~ga~Le~AL~~f~~d~~~-~~Gy~eV~tP~i 79 (297) T cd00770 1 DNVEIRRWGEPRVFDFKPKDHVELGEKLDILDFERGAKVSGSRFYYLKGDGALLERALINFALDFLT-KRGFTPVIPPFL 79 (297) T ss_pred CCEEEEEECCCCCCCCCCCCHHHHHHHCCCEECCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHH-HCCCEEEECCCC T ss_conf 9787997548899999988999999977881023224689877799888899999999999999999-879989988530 Q ss_pred CCHHHHHHHHHCHHHHHHHHHHH-HCCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEE Q ss_conf 02788986551422476776431-00023134541145445342059555042088532210788433554343212222 Q gi|254780680|r 201 VRDEAMYGTGQIPKFADDMFCTT-DGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQH 279 (430) Q Consensus 201 v~~~~~~gtG~lp~f~~~~y~~~-d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvH 279 (430) T Consensus 80 v~~~~~~~sG~~~~~~e~~y~i~~~~~~Li~tae~~l~~~~~~~~~~~~dLPlr~~~~s~cfR~Eags~G~d~~GL~Rvh 159 (297) T cd00770 80 VRKEVMEGTGQLPKFDEQLYKVEGEDLYLIATAEVPLAALHRDEILEEEELPLKYAGYSPCFRKEAGSAGRDTRGLFRVH 159 (297) T ss_pred CHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHCCCCCEEEEEEEEECCHHHCCCCEEECCCHHHHCCCCCCCCCCCEEEEE T ss_conf 13899854357876356521035505555440566622344200317755886502246341320377775555457887 Q ss_pred EEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCH Q ss_conf 10200212127865014578989999999999841067530378011784434024101101004833237531021007 Q gi|254780680|r 280 QFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNF 359 (430) Q Consensus 280 QF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~ 359 (430) T Consensus 160 qF~kvE~~~~c~pe~s~~~~e~~~~~~e~~l~~L~lpyrvv~~~tgdlg~~a~~~~DiE~W~P~~~~y~EvsS~Snc~Df 239 (297) T cd00770 160 QFEKVEQFVFTKPEESWEELEELISNAEEILQELGLPYRVVNICTGDLGFAAAKKYDIEAWMPGQGKYREISSCSNCTDF 239 (297) T ss_pred ECCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHEEEEEEEEHHHCCEEEEEECCCCHHH T ss_conf 21100377616878899999999999999999815501450124655573222207656310541976886131540006 Q ss_pred HHHHCCCEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCC Q ss_conf 6453268473389984101042004322899999999883468998386582223101 Q gi|254780680|r 360 QSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYM 417 (430) Q Consensus 360 QsrRl~iry~~~~~~~~~~~htlNgt~~A~~R~l~ailEn~q~~dg~i~iP~~L~pym 417 (430) T Consensus 240 QarRl~iry~~~~~~~~~~~htlngt~~A~~R~l~allEn~q~~dg~v~iP~~L~~ym 297 (297) T cd00770 240 QARRLNIRYRDKKDGKKQYVHTLNGTALATPRTIVAILENYQTEDGSVVIPEVLRPYM 297 (297) T ss_pred HHHHCCCEEECCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCEECCCCCCCCC T ss_conf 6652367773489995265488136320888899999972738998786880031319 |
SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer. |
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
---|
Probab=100.00 E-value=0 Score=363.36 Aligned_cols=245 Identities=22% Similarity=0.278 Sum_probs=224.1 Q ss_pred CCCCHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHH Q ss_conf 11220221173100011222167530105648899999999999862232032021235620278898655142247677 Q gi|254780680|r 140 EHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDM 219 (430) Q Consensus 140 ~H~elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~ 219 (430) T Consensus 6 s~-~ll~~ag~i~------~~~~G~~~~lP~G~~i~~~i~~~i~~~-~~~~G~~ev~~P~l~~~~l~~~sg~~~~f~~em 77 (255) T cd00779 6 SH-KLLLRAGFIR------QTSSGLYSWLPLGLRVLKKIENIIREE-MNKIGAQEILMPILQPAELWKESGRWDAYGPEL 77 (255) T ss_pred HH-HHHHHCCCCC------CCCCCCEEECCHHHHHHHHHHHHHHHH-HHHCCCEEEECCCCCCHHHHHHHCCCCCCCCCE T ss_conf 79-9998758876------578862788502999999999999999-998599899765347388874425301368731 Q ss_pred HHHH----HCCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECC-CCCC Q ss_conf 6431----0002313454114544534205955504208853221078843355434321222210200212127-8650 Q gi|254780680|r 220 FCTT----DGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSIT-REED 294 (430) Q Consensus 220 y~~~----d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~-~pe~ 294 (430) T Consensus 78 f~v~d~~~~~~~L~PT~E~~~~~~~~~~i~SyrdLPl~~~q~~~~fR~E~r----~~~GllR~rEF~~~d~hsf~~~~e~ 153 (255) T cd00779 78 LRLKDRHGKEFLLGPTHEEVITDLVANEIKSYKQLPLNLYQIQTKFRDEIR----PRFGLMRGREFLMKDAYSFDIDEES 153 (255) T ss_pred EEEECCCCCEEEECCCCHHHHHHHHHHHCCCHHHCCEEEECCCCEECCCCC----CCCCCCEEEEEEEEHHHCCCCCHHH T ss_conf 544537887773168874889999986503612257454135335425667----8866324313770022035699899 Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCCEEECCCCC Q ss_conf 14578989999999999841067530378011784434024101101004833237531021007645326847338998 Q gi|254780680|r 295 SFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYRDPNSK 374 (430) Q Consensus 295 S~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~ 374 (430) T Consensus 154 a~~~~~~~~~~y~~i~~~Lglp~~~v~~~~g~~g~~~s~ef~~~~~l~~~-~~lEvg~~~~lG~~~s~~~~i~y~d~dg~ 232 (255) T cd00779 154 LEETYEKMYQAYSRIFKRLGLPFVKVEADSGAIGGSLSHEFHVLSPLKIT-KGIEVGHIFQLGTKYSKALGATFLDENGK 232 (255) T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEECCCCC-CEEEEEEEECCCCHHHHHCCCEEECCCCC T ss_conf 99999999999999999839987998547667788745799998247777-56899745505625578559999999999 Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHH Q ss_conf 4101042004322899999999883 Q gi|254780680|r 375 SLKFTHTLNGSGVAVGRCLIAILEN 399 (430) Q Consensus 375 ~~~~~htlNgt~~A~~R~l~ailEn 399 (430) T Consensus 233 -~~~~~m-~s~Gi~i~R~i~AliEq 255 (255) T cd00779 233 -PKPLEM-GCYGIGVSRLLAAIIEQ 255 (255) T ss_pred -EEEEEE-ECCCCHHHHHHHHHCCC T ss_conf -884697-06504898888884049 |
ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes. |
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain | Back alignment and domain information |
---|
Probab=99.97 E-value=5.5e-31 Score=250.97 Aligned_cols=246 Identities=21% Similarity=0.323 Sum_probs=208.1 Q ss_pred CCCCHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHH Q ss_conf 11220221173100011222167530105648899999999999862232032021235620278898655142247677 Q gi|254780680|r 140 EHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDM 219 (430) Q Consensus 140 ~H~elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~ 219 (430) T Consensus 1 dHrklg~el~lf~~~~~---~g~G~~~w~P~G~~i~~~L~~~ir~~~-~~~Gy~eV~tP~i~~~~Lw~~SGH~~~y~e~m 76 (298) T cd00771 1 DHRRLGGELELFFFFDE---AGPGLPFWLPKGAIIRNELEDFLRELQ-RKRGYQEVETPIIYNKELWETSGHWDHYRENM 76 (298) T ss_pred CHHHHCCCCCCCCCCCC---CCCCCEEECCCHHHHHHHHHHHHHHHH-HHCCCEEEECCCCCCHHHHHHCCCCCCCCCCE T ss_conf 94574401157511777---667657883888999999999999999-98699899886126655675477631136856 Q ss_pred HHH---HHCCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHH Q ss_conf 643---10002313454114544534205955504208853221078843355434321222210200212127865014 Q gi|254780680|r 220 FCT---TDGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSF 296 (430) Q Consensus 220 y~~---~d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~ 296 (430) T Consensus 77 f~~~~~~~~~~LkPmnCp~h~~i~~~~~~SYrdLPlR~~E~g~~~R~E~s--G-~L~GL~RvR~FtqdDaHiFc~~eQ~~ 153 (298) T cd00771 77 FPFEEEDEEYGLKPMNCPGHCLIFKSKPRSYRDLPLRLAEFGTVHRYEQS--G-ALHGLTRVRGFTQDDAHIFCTPDQIK 153 (298) T ss_pred EEEEECCCCEEEECCCCHHHHHHHHCCCCCHHHCCHHHHCCCCEECCCCC--C-CCCCCCCCCCCCCCCCEEECCHHHHH T ss_conf 88886254168850686889999863556734346765207505547677--6-75574455567457632441688999 Q ss_pred HHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCCHHHEEEEEEEECCCCCC------------------------------ Q ss_conf 57898999999999984106753037801178443402410110100483------------------------------ Q gi|254780680|r 297 TEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNL------------------------------ 346 (430) Q Consensus 297 ~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~~a~~~~DiE~w~P~~~~------------------------------ 346 (430) T Consensus 154 ~E~~~~~~~~~~vy~~fG~~~~~~~ls~r~ek~~g----~~e~W~~ae~~l~~~l~~~~~~~~~~~ge~AFyGPKiD~~~ 229 (298) T cd00771 154 EEIKGVLDLIKEVYSDFGFFDYKVELSTRPEKFIG----SDEVWEKAEAALREALEEIGLPYEINEGEGAFYGPKIDFHV 229 (298) T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC----CHHHHHHHHHHHHHHHHHCCCCCEECCCCCEEEEEEEEEEE T ss_conf 99999999999999982887324899647876779----98999999999999999759985757886001300589998 Q ss_pred ------EEEEEEECCCCCHH-HHHCCCEEECCCCCCC--CEEE-EECCCHHHHHHHHHHHHHHCC Q ss_conf ------32375310210076-4532684733899841--0104-200432289999999988346 Q gi|254780680|r 347 ------YREISSCSTCGNFQ-SRRMNSRYRDPNSKSL--KFTH-TLNGSGVAVGRCLIAILENYL 401 (430) Q Consensus 347 ------y~Ev~S~Snc~D~Q-srRl~iry~~~~~~~~--~~~h-tlNgt~~A~~R~l~ailEn~q 401 (430) T Consensus 230 ~D~lgR~~q~~Ti--QlDf~lp~rF~l~Y~~~dg~~~~Pv~iHrai~GS---~ERfia~LiE~~~ 289 (298) T cd00771 230 KDALGREWQCSTI--QLDFNLPERFDLTYIGEDGEKKRPVMIHRAILGS---IERFIGILIEHYA 289 (298) T ss_pred EECCCCEEEEEEE--EEEECCHHHCCCEEECCCCCCCCCEEEEECCCCH---HHHHHHHHHHHCC T ss_conf 6068976870146--8850674326988998999864898999557670---9999999998607 |
ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. |
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
---|
Probab=99.93 E-value=5.7e-26 Score=213.72 Aligned_cols=247 Identities=20% Similarity=0.235 Sum_probs=222.8 Q ss_pred CCCHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHH-HHHHH Q ss_conf 12202211731000112221675301056488999999999998622320320212356202788986551422-47677 Q gi|254780680|r 141 HFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPK-FADDM 219 (430) Q Consensus 141 H~elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~-f~~~~ 219 (430) T Consensus 6 ~~~v~~~a~l~d~-----~~~~G~~~~lP~G~~i~~ki~~~i~~e-~~~~G~qev~~P~l~p~~lw~ksgr~~~~~~~e~ 79 (264) T cd00772 6 SLEHIGKAELADQ-----GPGRGIINFLPLAKAILDKIENVLDKM-FKEHGAQNALFPFFILASFLEKEAEHDEGFSKEL 79 (264) T ss_pred HHHHHHHHCCEEC-----CCCCCEEEECHHHHHHHHHHHHHHHHH-HHHCCCEEEECCCCCCHHHHHHCCCHHHCCCCCE T ss_conf 8478676354204-----898875888905999999999999999-9982994981256799899997698444378523 Q ss_pred HHHH--------HCCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEEC-C Q ss_conf 6431--------000231345411454453420595550420885322107884335543432122221020021212-7 Q gi|254780680|r 220 FCTT--------DGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSI-T 290 (430) Q Consensus 220 y~~~--------d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~-~ 290 (430) T Consensus 80 ~~~~~~~~~~~e~~~~L~PT~Ee~~~~~~~~~i~SyrdLPl~lyQ~~~~fR~E~----r~r~GllR~REFlmkDahsf~~ 155 (264) T cd00772 80 AVFKDAGDEELEEDFALRPTLEENIGEIAAKFIKSWKDLPQHLNQIGNKFRDEI----RPRFGFLRAREFIMKDGHSAHA 155 (264) T ss_pred EEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHCCHHHHHHHHHHHCCC----CCCCCCHHHEEEEEEEEEECCC T ss_conf 799734874212352016778689999998640766557977876557860578----8554332320434110353259 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHC-CHHHHCCCCCHHCCCHHHEEEEEEEECC-CCCCEEEEEEECCCCCHHHHHCCCEE Q ss_conf 865014578989999999999841-0675303780117844340241011010-04833237531021007645326847 Q gi|254780680|r 291 REEDSFTEHERMLSCAEEILKRLD-LHYRVVSLCTGDLGFSACKTYDLEVWLA-GQNLYREISSCSTCGNFQSRRMNSRY 368 (430) Q Consensus 291 ~pe~S~~~~e~~~~~~~~i~~~L~-lpyRvv~~~sgdlg~~a~~~~DiE~w~P-~~~~y~Ev~S~Snc~D~QsrRl~iry 368 (430) T Consensus 156 t~e~a~~~y~~~~~~Y~~if~~lg~lp~~~~~~~~g~kf~Ga~~s~ef~~~~~~G~~~~~ev~H~f~~g~~~s~~~~~~f 235 (264) T cd00772 156 DAEEADEEFLNMLSAYAEIARDLAAIDFIEGEADEGAKFAGASKSREFEALMEDGKAKQAETGHIFGEGFARAFDLKAKF 235 (264) T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCEEEEEEEEECCCCCCCEEEEEEECCCCCCEECCCCCEE T ss_conf 99999999999999999999996698516764477885688501689999878887136446888157850122566578 Q ss_pred ECCCCCCCCEEEEECCCHHHHHHHHHHHHHH Q ss_conf 3389984101042004322899999999883 Q gi|254780680|r 369 RDPNSKSLKFTHTLNGSGVAVGRCLIAILEN 399 (430) Q Consensus 369 ~~~~~~~~~~~htlNgt~~A~~R~l~ailEn 399 (430) T Consensus 236 ~~~dg~~-~~v~m-~syGIgitRligaiIeq 264 (264) T cd00772 236 LDKDGKE-KFFEM-GCWGIGISRFIGAIIEQ 264 (264) T ss_pred ECCCCCE-EEEEE-CCCCCHHHHHHHEEECC T ss_conf 8899998-22580-36778177444405529 |
ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. |
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
---|
Probab=99.89 E-value=1.3e-22 Score=188.82 Aligned_cols=241 Identities=22% Similarity=0.243 Sum_probs=209.6 Q ss_pred CHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHH-HHHCHHHHHHHHH Q ss_conf 202211731000112221675301056488999999999998622320320212356202788986-5514224767764 Q gi|254780680|r 143 EIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYG-TGQIPKFADDMFC 221 (430) Q Consensus 143 elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~g-tG~lp~f~~~~y~ 221 (430) T Consensus 8 ~~~~~~~l~d~-~--pv~--G~~~~lP~G~~i~~~l~~~~r~~-~~~~G~~ev~~P~l~~~~~~~k~sgh~~~y~~emf~ 81 (261) T cd00778 8 EVITKAELIDY-G--PVK--GCMVFRPYGYAIWENIQKILDKE-IKETGHENVYFPLLIPESELEKEKEHIEGFAPEVAW 81 (261) T ss_pred HHHHHHCCCCC-C--CCC--CEEEECCCHHHHHHHHHHHHHHH-HHHCCCEEEECCCCCCHHHHHHHHCHHHCCCCCCEE T ss_conf 99998177224-7--998--30888632899999999999999-998699699883327889999742814305765335 Q ss_pred HH--------HCCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEE-ECCCC Q ss_conf 31--------0002313454114544534205955504208853221078843355434321222210200212-12786 Q gi|254780680|r 222 TT--------DGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELV-SITRE 292 (430) Q Consensus 222 ~~--------d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~-~~~~p 292 (430) T Consensus 82 v~~~g~~~~d~~y~LkPmne~~~~~i~~~~~~SYRdLPlrl~q~g~~~R~E~s--~--~~gL~RvReF~~dDahs~~~t~ 157 (261) T cd00778 82 VTHGGLEELEEPLALRPTSETAIYPMFSKWIRSYRDLPLKINQWVNVFRWETK--T--TRPFLRTREFLWQEGHTAHATE 157 (261) T ss_pred EECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHCCCEECCCCC--C--CCCCCEEEEEEEECCCCCCCCH T ss_conf 52168520135603478886999999973505402278255530422437788--8--8765325425234233655899 Q ss_pred CCHHHHHHHHHHHHHHHHHH-HCCHHHHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCCEEECC Q ss_conf 50145789899999999998-41067530378011784434024101101004833237531021007645326847338 Q gi|254780680|r 293 EDSFTEHERMLSCAEEILKR-LDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYRDP 371 (430) Q Consensus 293 e~S~~~~e~~~~~~~~i~~~-L~lpyRvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry~~~ 371 (430) T Consensus 158 eq~~~e~~~~~~~y~~i~~~l~~~~~~~~~~~~~dk~~Ga~y~~~id~~~~d-gr~~q~gti~~l~~~~s~~f~l~y~~~ 236 (261) T cd00778 158 EEAEEEVLQILDLYKEFYEDLLAIPVVKGRKTEWEKFAGADYTYTIEAMMPD-GRALQSGTSHNLGQNFSKAFDIKYQDK 236 (261) T ss_pred HHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHCCCCCCCCCEEEEEECCC-CCEEEEEHHHHCCCCHHHHCCCEEECC T ss_conf 9999999999999999999847815786056521116785100014787478-870467510202765356379899999 Q ss_pred CCCCCCEEEE-ECCCHHHHHHHHHHHHH Q ss_conf 9984101042-00432289999999988 Q gi|254780680|r 372 NSKSLKFTHT-LNGSGVAVGRCLIAILE 398 (430) Q Consensus 372 ~~~~~~~~ht-lNgt~~A~~R~l~ailE 398 (430) T Consensus 237 dg~~-~~phr~~~G~~---eR~ig~lI~ 260 (261) T cd00778 237 DGQK-EYVHQTSWGIS---TRLIGAIIM 260 (261) T ss_pred CCCC-CCCEEEEEEHH---HHHHHHHHC T ss_conf 9998-08557412499---899889734 |
ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria. |
>PRK12325 prolyl-tRNA synthetase; Provisional | Back alignment and domain information |
---|
Probab=99.89 E-value=7.3e-23 Score=190.64 Aligned_cols=266 Identities=20% Similarity=0.270 Sum_probs=205.4 Q ss_pred CHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHH Q ss_conf 20221173100011222167530105648899999999999862232032021235620278898655142247677643 Q gi|254780680|r 143 EIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCT 222 (430) Q Consensus 143 elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~ 222 (430) T Consensus 24 ~ll~~~g~i~------~~~~Gl~~wlP~G~~i~~~le~~ir~e-~~~~G~~eV~tP~l~~~~Lw~~SGh~~~y~~~mf~~ 96 (438) T PRK12325 24 RLMLRAGMIR------QQAAGIYSWLPLGLKVLKKIENIVREE-QNRAGAIEILMPTIQPADLWRESGRYDAYGKEMLRI 96 (438) T ss_pred HHHHHCCCCC------CCCCCCCEECCCHHHHHHHHHHHHHHH-HHHCCCEEEECCCCCCHHHHHHHCCHHHHHHHHCEE T ss_conf 9999707756------346873221605899999999999999-997499799877658778998628764555742121 Q ss_pred H----HCCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEEC-CCCCCHHH Q ss_conf 1----000231345411454453420595550420885322107884335543432122221020021212-78650145 Q gi|254780680|r 223 T----DGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSI-TREEDSFT 297 (430) Q Consensus 223 ~----d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~-~~pe~S~~ 297 (430) T Consensus 97 ~d~~~~~~~l~Pmnc~~~~~i~~~~~~SYRdLPlrl~q~g~~~R~E~s--p~--~GLlRvReF~m~Dah~F~~~~e~~~~ 172 (438) T PRK12325 97 KDRHDREMLYGPTNEEMITDIFRSYVKSYKDLPLNLYHIQWKFRDEIR--PR--FGVMRGREFLMKDAYSFDLDEEGARK 172 (438) T ss_pred ECCCCCEECCCCCCCHHHHHHHHHCCCCHHHCCHHHHHHHHEECCCCC--CC--CCCCEEEEEECCCHHHCCCCHHHHHH T ss_conf 347777431389984999999974034265425788764440112026--76--44101223330415432468899999 Q ss_pred HHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCCHHHEEE-------------EEEEE-----CCCC--------------- Q ss_conf 78989999999999841067530378011784434024-------------10110-----1004--------------- Q gi|254780680|r 298 EHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTY-------------DLEVW-----LAGQ--------------- 344 (430) Q Consensus 298 ~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~~a~~~~-------------DiE~w-----~P~~--------------- 344 (430) T Consensus 173 ~~~~v~~~y~~if~~lgl~~~~v~ad~g~igg~~s~Ef~~~~~~ged~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (438) T PRK12325 173 SYNRMFVAYLRTFKRLGLKAIPMRADTGPIGGDLSHEFHILAETGESTVFYDKDFLDLPVPGEDIDYDADLQDIVDEWTS 252 (438) T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHCCCHHEEECHHHHHCCCCCCCCCHHHHHHHHHHHHHH T ss_conf 99999999999999809944899823676677512674766522650246613334225676554623566789988876 Q ss_pred -----------C-------------CEEEEEEECCCCCHHHHHCCCEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHC Q ss_conf -----------8-------------3323753102100764532684733899841010420043228999999998834 Q gi|254780680|r 345 -----------N-------------LYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENY 400 (430) Q Consensus 345 -----------~-------------~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~~~~~htlNgt~~A~~R~l~ailEn~ 400 (430) T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iEvG~if~lg~~ys~~~~~~~~~~dg~~-~~~~m~-~~GIgieR~ia~liE~~ 330 (438) T PRK12325 253 LYAATDEMHDEAKFAAVPEERRLSARGIEVGHIFYFGTKYSEPMNAKVQGPDGKE-VPVHMG-SYGIGVSRLVAAIIEAS 330 (438) T ss_pred HHHHHHHHCCHHHCCCCCHHHHEECCCEEEEEEEECCCCCCHHCCCCCCCCCCCC-CCEEEE-CCCCCHHHHHHHHHHHH T ss_conf 5034664346755376675663011330331243045301522067444877773-222554-13342878999999983 Q ss_pred CCCCCCEECCCCCCCCCCCEEEEC Q ss_conf 689983865822231018801307 Q gi|254780680|r 401 LNADGSVTIPTVLRPYMNNLAVIK 424 (430) Q Consensus 401 q~~dg~i~iP~~L~pym~g~~~i~ 424 (430) T Consensus 331 ~d~~G-~~wP~wlAP~Q--V~Iip 351 (438) T PRK12325 331 HDDKG-IIWPESVAPFK--VGIIN 351 (438) T ss_pred CCCCC-CCCCCCCCCEE--EEEEE T ss_conf 64688-54676748657--99997 |
|
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
---|
Probab=99.88 E-value=2.7e-22 Score=186.42 Aligned_cols=264 Identities=23% Similarity=0.370 Sum_probs=211.6 Q ss_pred CCCCCCHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHH Q ss_conf 62112202211731000112221675301056488999999999998622320320212356202788986551422476 Q gi|254780680|r 138 SREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFAD 217 (430) Q Consensus 138 ~k~H~elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~ 217 (430) T Consensus 177 kRDHRklGkel~LF~f~---~~~gpG~~~wlP~G~~i~~~le~~~r~~~-~~~Gy~eV~TP~i~~~~Lw~~SGH~~~Y~e 252 (576) T PRK12305 177 ERDHRKIGKDLKLFTFS---SLAGQGFPIWLENGMIIKNAIRKFILELD-RKYGFDEVLTPHFGEKKLYKTSGHLDHYKD 252 (576) T ss_pred HCCHHHHHHHCCEEEEC---CCCCCCCEEECCCHHHHHHHHHHHHHHHH-HHCCCEEEECCCCCCHHHHHHCCCHHHHHH T ss_conf 65778764215658723---44688764674767899999999999999-986998984642142889976664655664 Q ss_pred HHHHH----HHCCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCC Q ss_conf 77643----10002313454114544534205955504208853221078843355434321222210200212127865 Q gi|254780680|r 218 DMFCT----TDGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREE 293 (430) Q Consensus 218 ~~y~~----~d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe 293 (430) T Consensus 253 ~Mf~~~~~~~e~~~lKPMNCP~H~~if~~~~rSYRdLPlR~aEfg~~~R~E~--SG-~L~GL~RvR~FtqDDAHIFct~d 329 (576) T PRK12305 253 DMFKPLKIENEELIPRPMTCPHHIILYSNELRSYRDLPIRLSEQSRLYRYEK--SG-ALTGLERVRAMDLTEGHIFVRKD 329 (576) T ss_pred HCCCCEECCCCEEEECCCCCHHHHHHHHCCCCCHHHCCHHHHCCCCEECCCC--CC-CCCCCCCCCCCCCCCCCEEECHH T ss_conf 2573063156416535778632677764277544432422000443544788--86-55575546688768712120899 Q ss_pred CHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCCHHHEEEEEEEE--------------------CCCCCCE------ Q ss_conf 01457898999999999984106753037801178443402410110--------------------1004833------ Q gi|254780680|r 294 DSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVW--------------------LAGQNLY------ 347 (430) Q Consensus 294 ~S~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~~a~~~~DiE~w--------------------~P~~~~y------ 347 (430) T Consensus 330 Qi~~Ei~~~l~~i~~vy~~fGf~~~~~~lS~r~~~~~ek~~g~de~W~~Ae~~L~~al~~~g~~y~~~~GegAFYGPKID 409 (576) T PRK12305 330 QIESEVKHLFKMIQEALSIFKIKIFYISLSLRDPNDKEKFFDDDQMWEQAEADLKKMLKDNKINYKEMIGEAAFYGPKID 409 (576) T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEECCCCCCEECCCCC T ss_conf 99999999999999999853987315899943898875345972769999999999999749971423065010567634 Q ss_pred -------EEEEEECCC-CCHH-HHHCCCEEECCCCCCCC--EEE-EECCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCC Q ss_conf -------237531021-0076-45326847338998410--104-20043228999999998834689983865822231 Q gi|254780680|r 348 -------REISSCSTC-GNFQ-SRRMNSRYRDPNSKSLK--FTH-TLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRP 415 (430) Q Consensus 348 -------~Ev~S~Snc-~D~Q-srRl~iry~~~~~~~~~--~~h-tlNgt~~A~~R~l~ailEn~q~~dg~i~iP~~L~p 415 (430) T Consensus 410 ~~v~DalgR~wq~~TIQlDf~lPeRF~l~Y~~~dg~~~rPVmIHRAilGS---~ERfigiLiEh~~G-----~~P~WLaP 481 (576) T PRK12305 410 FQVKTVLNKEITVSTIQLDFLLPEKFNISYINENNEKETPVLIHRGLIGT---YERFIAILLEQTKG-----NLPFWLSP 481 (576) T ss_pred EEEECCCCCEEEEEEEEEEECCHHHCCCEEECCCCCCCCCEEEEECCCCC---HHHHHHHHHHHCCC-----CCCCCCCC T ss_conf 69850678678742456663458557988877888767875987335474---89999999997079-----99836273 Q ss_pred C Q ss_conf 0 Q gi|254780680|r 416 Y 416 (430) Q Consensus 416 y 416 (430) T Consensus 482 ~ 482 (576) T PRK12305 482 K 482 (576) T ss_pred C T ss_conf 0 |
|
>PRK12444 threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
---|
Probab=99.87 E-value=7.1e-22 Score=183.29 Aligned_cols=260 Identities=19% Similarity=0.363 Sum_probs=207.2 Q ss_pred CCCCCCHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHH Q ss_conf 62112202211731000112221675301056488999999999998622320320212356202788986551422476 Q gi|254780680|r 138 SREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFAD 217 (430) Q Consensus 138 ~k~H~elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~ 217 (430) T Consensus 244 kRDHRklGkel~LF~f~~~----~pG~~fwlP~G~~i~~~le~~~r~~~-~~~GY~eV~TP~i~~~~Lw~~SGH~~~Y~e 318 (639) T PRK12444 244 KRNHRKLGNELELFMFSEE----APGMPFYLPKGQIIRNELEAFLREIQ-KEYNYQEVRTPFMMNQELWERSGHWGHYKD 318 (639) T ss_pred HCCHHHHHHHCCEEEECCC----CCCCEEEECCHHHHHHHHHHHHHHHH-HHCCCEEECCCEEEHHHHHHHCCHHHHHHH T ss_conf 6478876532272882277----89744784678699999999999999-983987822866621568761660433330 Q ss_pred HHHHHH---HCCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCC Q ss_conf 776431---00023134541145445342059555042088532210788433554343212222102002121278650 Q gi|254780680|r 218 DMFCTT---DGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREED 294 (430) Q Consensus 218 ~~y~~~---d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~ 294 (430) T Consensus 319 ~Mf~~~~d~~~~~lKPMNCP~H~~if~~~~rSYRdLPlR~aEfg~vhR~E~--SG-~L~GL~RVR~FtqDDAHIFct~dQ 395 (639) T PRK12444 319 NMYFSEVDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEF--SG-ALNGLLRVRTFCQDDAHLFVTPEQ 395 (639) T ss_pred CCCCCCCCCCEEECCCCCCHHHHHHHHCCCCCHHHCCHHHHHCCCEECCCC--CC-CCCCCCCCCCCCCCCCEEECCHHH T ss_conf 275545454033126768588999986056214436522243364633778--76-645767788998798246538899 Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCCHHHEEEEEEEEC--------------------CCCCCE------- Q ss_conf 14578989999999999841067530378011784434024101101--------------------004833------- Q gi|254780680|r 295 SFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWL--------------------AGQNLY------- 347 (430) Q Consensus 295 S~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~~a~~~~DiE~w~--------------------P~~~~y------- 347 (430) T Consensus 396 i~~Ei~~~~~~~~~vy~~fGf~~~-~~LStrp----ek~~G~de~W~~Ae~~L~~aL~~~g~~y~~~~GegAFYGPKiD~ 470 (639) T PRK12444 396 IEDEIKSVMAQIDYVYKTFGFEYE-VELSTRP----EDSMGDDKLWEQAEAALENVLQSLNYKYRLNEGDGAFYGPKIDF 470 (639) T ss_pred HHHHHHHHHHHHHHHHHHCCCEEE-EEECCCC----CCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCEEEE T ss_conf 999999999999999974797299-9816786----33458889999999999999997499758676863640326568 Q ss_pred ------EEEEEECC-CCCHH-HHHCCCEEECCCCCCCCEEEEECCCHH-HHHHHHHHHHHHCCCCCCCEECCCCCCCC Q ss_conf ------23753102-10076-453268473389984101042004322-89999999988346899838658222310 Q gi|254780680|r 348 ------REISSCST-CGNFQ-SRRMNSRYRDPNSKSLKFTHTLNGSGV-AVGRCLIAILENYLNADGSVTIPTVLRPY 416 (430) Q Consensus 348 ------~Ev~S~Sn-c~D~Q-srRl~iry~~~~~~~~~~~htlNgt~~-A~~R~l~ailEn~q~~dg~i~iP~~L~py 416 (430) T Consensus 471 ~v~DalgR~wq~~TIQlDF~lPeRF~l~Y~~~dg~~-~rPVmIHRAilGS~ERFigiLiEh~~G-----~fP~WLaP~ 542 (639) T PRK12444 471 HIKDALNRSHQCGTIQLDFQMPEKFDLNYIDEKNEK-VRPVVIHRAVLGSLDRFLAILIEHFGG-----AFPAWVAPV 542 (639) T ss_pred EEEECCCCEEECCEEEEEECCHHHCCCEEECCCCCC-CCCEEEEECCCCCHHHHHHHHHHHCCC-----CCCCCCCCC T ss_conf 998078872451234552056633587778789982-598899957877789999999997279-----898565720 |
|
>PRK03772 threonyl-tRNA synthetase; Validated | Back alignment and domain information |
---|
Probab=99.87 E-value=1.3e-21 Score=181.36 Aligned_cols=256 Identities=21% Similarity=0.340 Sum_probs=204.4 Q ss_pred CCCCCCHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHH Q ss_conf 62112202211731000112221675301056488999999999998622320320212356202788986551422476 Q gi|254780680|r 138 SREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFAD 217 (430) Q Consensus 138 ~k~H~elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~ 217 (430) T Consensus 241 kRDHRklGkel~LF~f~~---~-~pG~~fwlP~G~~i~~~le~~~r~~~-~~~Gy~eV~TP~i~~~~Lw~~SGH~~~Y~e 315 (642) T PRK03772 241 KRDHRKIGKQLDLYHMQE---E-APGMVFWHNDGWTIFRELEVFVRSKL-KEYQYQEVKGPFMMDRVLWEKTGHWDNYAD 315 (642) T ss_pred HCCHHHHHHHCCCEEECC---C-CCCCEEECCCHHHHHHHHHHHHHHHH-HHCCCEEEECCHHCCHHHHHHCCHHHHHHC T ss_conf 658888877522047546---5-88763665858899999999999999-986985985543213778873444766410 Q ss_pred HHHHHH---HCCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCC Q ss_conf 776431---00023134541145445342059555042088532210788433554343212222102002121278650 Q gi|254780680|r 218 DMFCTT---DGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREED 294 (430) Q Consensus 218 ~~y~~~---d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~ 294 (430) T Consensus 316 ~Mf~~~~e~~ey~lKPMNCP~H~~iy~~~~rSYRdLPlR~aEfg~~~R~E~S--G~-L~GL~RVR~FtqdDaHIFC~~dQ 392 (642) T PRK03772 316 AMFTTSSENREYAIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPS--GS-LHGLMRVRGFTQDDAHIFCTEEQ 392 (642) T ss_pred CCCCCCCCHHHHCCCCCCCHHHHHHHHCCCCCHHHCCHHHHHHHHHHCCCCC--CC-CCCCCCCCCCCCCCCEEECCHHH T ss_conf 3422342014430467787348899861664344365455541134316666--55-34745688998788435537899 Q ss_pred HHHHHHHHHHHHHHHHHHHCCH-HHHCCCCCHHCCCHHHEEEEEEEE--------------------CCCCCCE------ Q ss_conf 1457898999999999984106-753037801178443402410110--------------------1004833------ Q gi|254780680|r 295 SFTEHERMLSCAEEILKRLDLH-YRVVSLCTGDLGFSACKTYDLEVW--------------------LAGQNLY------ 347 (430) Q Consensus 295 S~~~~e~~~~~~~~i~~~L~lp-yRvv~~~sgdlg~~a~~~~DiE~w--------------------~P~~~~y------ 347 (430) T Consensus 393 i~~Ei~~~l~~~~~vy~~fGf~~~~-~~LStr----pek~~G~~e~W~~AE~~L~~aL~~~g~~y~~~~GegAFYGPKID 467 (642) T PRK03772 393 IRDEVNSCIKMVYDMYSTFGFEKIV-VKLSTR----PEKRIGSDEMWDRAEADLAVALEENNIPFEYQPGEGAFYGPKIE 467 (642) T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEE-EEECCC----CHHCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCC T ss_conf 9999999999999999973986389-996268----22025888899999999999999739970455676344455302 Q ss_pred --------EEEEEECCCCCHH-HHHCCCEEECCCCCCCCEEEE----ECCCHHHHHHHHHHHHHHCCCCCCCEECCCCCC Q ss_conf --------2375310210076-453268473389984101042----004322899999999883468998386582223 Q gi|254780680|r 348 --------REISSCSTCGNFQ-SRRMNSRYRDPNSKSLKFTHT----LNGSGVAVGRCLIAILENYLNADGSVTIPTVLR 414 (430) Q Consensus 348 --------~Ev~S~Snc~D~Q-srRl~iry~~~~~~~~~~~ht----lNgt~~A~~R~l~ailEn~q~~dg~i~iP~~L~ 414 (430) T Consensus 468 ~~v~DalgR~wq~~TiQlDF~lP~RF~l~Y~~~dg~~-~~PVmIHRAilGS---~ERfiaiLiEh~~G-----~~P~WLa 538 (642) T PRK03772 468 FTLYDCLDRAWQCGTVQLDFSLPGRLSASYVGEDNER-KVPVMIHRAILGS---MERFIGILTEEYAG-----FFPTWLA 538 (642) T ss_pred EEEECCCCCEEEECCCEEECCCHHHCCCEEECCCCCC-CCCEEEEECCCCC---HHHHHHHHHHHCCC-----CCCCCCC T ss_conf 5997078976880232430013544288888789985-7858999246477---89999999998079-----9985647 Q ss_pred C Q ss_conf 1 Q gi|254780680|r 415 P 415 (430) Q Consensus 415 p 415 (430) T Consensus 539 P 539 (642) T PRK03772 539 P 539 (642) T ss_pred C T ss_conf 6 |
|
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
---|
Probab=99.86 E-value=5.7e-22 Score=183.99 Aligned_cols=258 Identities=22% Similarity=0.387 Sum_probs=203.0 Q ss_pred CCCCCCHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHH Q ss_conf 62112202211731000112221675301056488999999999998622320320212356202788986551422476 Q gi|254780680|r 138 SREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFAD 217 (430) Q Consensus 138 ~k~H~elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~ 217 (430) T Consensus 238 kRDHRklGkel~LF~f~~---~-~pGl~~w~P~G~~i~~~le~~~r~~~-~~~Gy~eV~TP~i~~~~Lw~~SGHw~~Y~e 312 (639) T PRK00413 238 KRDHRKLGKELDLFSFQE---E-GPGLPFWHPKGWIIRNELEDYMRRRH-LKAGYQEVNTPHILDRSLWETSGHWDHYRE 312 (639) T ss_pred HCCHHHHHHHCCCEEECC---C-CCCCEEECCCHHHHHHHHHHHHHHHH-HHCCCEEEECCCCCCHHHHHHCCCHHHHCC T ss_conf 528888877435157036---6-88764663768999999999999999-986985983641346889965474223225 Q ss_pred HHHHH----HHCCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCC Q ss_conf 77643----10002313454114544534205955504208853221078843355434321222210200212127865 Q gi|254780680|r 218 DMFCT----TDGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREE 293 (430) Q Consensus 218 ~~y~~----~d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe 293 (430) T Consensus 313 ~Mf~~~~~~~~~~~lKPMNCP~H~~if~~~~~SYRdLPlR~aEfg~~~R~E~--SG-~L~GL~RvR~FtqdDaHIFc~~d 389 (639) T PRK00413 313 NMFPTMSDDGEDYALKPMNCPGHILIFKSGLRSYRELPLRLAEFGTVHRYEK--SG-ALHGLMRVRGFTQDDAHIFCTPE 389 (639) T ss_pred CCCCCEECCCCEEEECCCCCCCHHHHHHCCCCCHHHCCHHHHHHHHHHCCCC--CC-CCCCEEEEEEEECCCCEEECCHH T ss_conf 4223240152103204668700335644355355547556664113205677--87-44564233000015841324789 Q ss_pred CHHHHHHHHHHHHHHHHHHHCCH-HHHCCCCCHHCCCHHHEEEEEEEEC--------------------CCCCCE----E Q ss_conf 01457898999999999984106-7530378011784434024101101--------------------004833----2 Q gi|254780680|r 294 DSFTEHERMLSCAEEILKRLDLH-YRVVSLCTGDLGFSACKTYDLEVWL--------------------AGQNLY----R 348 (430) Q Consensus 294 ~S~~~~e~~~~~~~~i~~~L~lp-yRvv~~~sgdlg~~a~~~~DiE~w~--------------------P~~~~y----~ 348 (430) T Consensus 390 Qi~~Ei~~~l~~~~~vy~~fGf~~~~-~~lStrp----ek~~g~~e~W~~Ae~~L~~al~~~g~~y~~~~GegAFYGPKI 464 (639) T PRK00413 390 QIKDELLSVLDLILSVYKDFGLTDYY-LELSTRP----EKRVGSDELWEKATEALREALEESGLEYVENPGEGAFYGPKI 464 (639) T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEE-EEEECCC----CCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCEECCEE T ss_conf 99999999999999999974998038-9996475----113588899999999999999974998087888611110166 Q ss_pred E---------EEEECCC-CCHH-HHHCCCEEECCCCCCCC--EEE-EECCCHHHHHHHHHHHHHHCCCCCCCEECCCCCC Q ss_conf 3---------7531021-0076-45326847338998410--104-2004322899999999883468998386582223 Q gi|254780680|r 349 E---------ISSCSTC-GNFQ-SRRMNSRYRDPNSKSLK--FTH-TLNGSGVAVGRCLIAILENYLNADGSVTIPTVLR 414 (430) Q Consensus 349 E---------v~S~Snc-~D~Q-srRl~iry~~~~~~~~~--~~h-tlNgt~~A~~R~l~ailEn~q~~dg~i~iP~~L~ 414 (430) T Consensus 465 D~~~~DalgR~wq~~TiQlDf~lPerF~l~Y~~~dg~~~~PVmIHRAi~GS---~ERfiaiLiEh~~---G--~~P~WLa 536 (639) T PRK00413 465 DVQLKDAIGRTWQCGTIQLDFNLPERFDLEYIAADGEKHRPVMIHRAIFGS---IERFIGILIEHYA---G--AFPLWLA 536 (639) T ss_pred EEEEECCCCCEEECCHHHHHHCCHHHCCCEEECCCCCCCCEEEEEECCCCC---HHHHHHHHHHHHC---C--CCCCCCC T ss_conf 778514468713200233222245424888998889816308999525565---8999999999808---9--8873657 Q ss_pred CC Q ss_conf 10 Q gi|254780680|r 415 PY 416 (430) Q Consensus 415 py 416 (430) T Consensus 537 P~ 538 (639) T PRK00413 537 PV 538 (639) T ss_pred CC T ss_conf 61 |
|
>PRK04483 threonyl-tRNA synthetase; Validated | Back alignment and domain information |
---|
Probab=99.86 E-value=2.1e-21 Score=179.79 Aligned_cols=260 Identities=19% Similarity=0.300 Sum_probs=207.6 Q ss_pred CCCCCCHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHH Q ss_conf 62112202211731000112221675301056488999999999998622320320212356202788986551422476 Q gi|254780680|r 138 SREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFAD 217 (430) Q Consensus 138 ~k~H~elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~ 217 (430) T Consensus 241 kRDHRklGkel~LF~f~~----~~pG~~~wlP~G~~i~~~le~~~r~~~-~~~Gy~eV~tP~i~~~~Lw~~SGH~~~Y~e 315 (634) T PRK04483 241 KRDHRKIGKAQDLFHLQE----EAPGLVFWHPKGWSLWQVVEQYMRKVY-RDSGYGEVRCPQILDVSLWQKSGHWDNYQD 315 (634) T ss_pred HCCHHHHHHHCCEEEECC----CCCCCEEECCCHHHHHHHHHHHHHHHH-HHCCCEEEECCEECCHHHHHHCCCHHHHHH T ss_conf 658888754211067337----788643881668999999999999999-982995998862513778762561645530 Q ss_pred HHHHHH---HCCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCC Q ss_conf 776431---00023134541145445342059555042088532210788433554343212222102002121278650 Q gi|254780680|r 218 DMFCTT---DGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREED 294 (430) Q Consensus 218 ~~y~~~---d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~ 294 (430) T Consensus 316 ~Mf~~~~~~~~~~lKPMNCP~H~~if~~~~rSYRdLPlR~aE~g~~~R~E~S--G-~L~GL~RvR~FtqdDaHIFc~~dQ 392 (634) T PRK04483 316 AMFFTESEKRTYAVKPMNCPGHVQVFNQGLHSYRDLPIRYGEFGACHRNEPS--G-ALHGILRVRGFTQDDGHVFCLESQ 392 (634) T ss_pred CCCEECCCCCEEEECCCCCHHHHHHHHCCCCCHHHCCHHHHHCCCEEECCCC--C-CCCCCCCCCCCCCCCCEEECCHHH T ss_conf 3713425540355157685648799871774444343665543302205677--6-545745688998898335638999 Q ss_pred HHHHHHHHHHHHHHHHHHHCCH-HHHCCCCCHHCCCHHHEEEEEEEEC--------------------CCCCCE------ Q ss_conf 1457898999999999984106-7530378011784434024101101--------------------004833------ Q gi|254780680|r 295 SFTEHERMLSCAEEILKRLDLH-YRVVSLCTGDLGFSACKTYDLEVWL--------------------AGQNLY------ 347 (430) Q Consensus 295 S~~~~e~~~~~~~~i~~~L~lp-yRvv~~~sgdlg~~a~~~~DiE~w~--------------------P~~~~y------ 347 (430) T Consensus 393 i~~Ei~~~l~~~~~vy~~fGf~~~~~-~lStrp----ek~~G~~~~W~~AE~~L~~al~~~g~~y~~~~GegAFYGPKID 467 (634) T PRK04483 393 IEAEVTAFHQQALAVYTAFGFDDIQI-KIALRP----EKRLGDDATWDKAEAALRSALGVCGVEWQELPGEGAFYGPKIE 467 (634) T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEE-EECCCC----CCCCCCHHHHHHHHHHHHHHHHHCCCCCEECCCCCCEECCCEE T ss_conf 99999999999999998639953899-963576----2345875568899999999999749870776797010566228 Q ss_pred -------EEEEEEC-CCCCHH-HHHCCCEEECCCCCCCCEEEEECCCHH-HHHHHHHHHHHHCCCCCCCEECCCCCCCC Q ss_conf -------2375310-210076-453268473389984101042004322-89999999988346899838658222310 Q gi|254780680|r 348 -------REISSCS-TCGNFQ-SRRMNSRYRDPNSKSLKFTHTLNGSGV-AVGRCLIAILENYLNADGSVTIPTVLRPY 416 (430) Q Consensus 348 -------~Ev~S~S-nc~D~Q-srRl~iry~~~~~~~~~~~htlNgt~~-A~~R~l~ailEn~q~~dg~i~iP~~L~py 416 (430) T Consensus 468 ~~v~DalgR~~q~~TiQlDf~lP~rF~l~Y~~~dg~~-~rPvmIHRAilGS~ERfi~iLiEh~~G-----~fP~WLaP~ 540 (634) T PRK04483 468 YHLKDAIGRTWQLGTMQVDFMMPGRLGAEYVDENSQK-KHPVMLHRAIVGSMERFIGILIEHHAG-----AFPAWLAPV 540 (634) T ss_pred EEEEECCCCEEECCEEEEECCCCCCCCCEEECCCCCC-CCEEEEEECCCCCHHHHHHHHHHHCCC-----CCCCCCCCC T ss_conf 9999279986741145762145343677898568983-860899945767789999999997379-----898576873 |
|
>PRK03991 threonyl-tRNA synthetase; Validated | Back alignment and domain information |
---|
Probab=99.85 E-value=3.6e-21 Score=178.03 Aligned_cols=277 Identities=21% Similarity=0.261 Sum_probs=211.6 Q ss_pred CCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHH Q ss_conf 15656656662112202211731000112221675301056488999999999998622320320212356202788986 Q gi|254780680|r 129 GKKPSAIHLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYG 208 (430) Q Consensus 129 G~~~~f~f~~k~H~elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~g 208 (430) T Consensus 188 ~~~~~~~~e-pphv~~mr~~~~~dyEp~Sd---~G~~rw~PkG~~i~~lle~Yv~~~-~~~~G~~eV~TP~m~d~~~~~~ 262 (613) T PRK03991 188 FKKELVGGE-PPHVELMRKKELADYEPGSD---VGHMRYYPKGRLMKDLLEDYVYNL-VKELGAMPVETPNMYDLSHPAI 262 (613) T ss_pred CCCCCCCCC-CCHHHHHHHCCCCCCCCCCC---CCCEEECCCHHHHHHHHHHHHHHH-HHHCCCEEEECCCEEECCCCHH T ss_conf 134457789-83889998717655574787---775123554789999999999999-9863966845761640554025 Q ss_pred HHHCHHHHHHHHHHH---HCCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECC-CCCCCCCCCCCCCCEEEEEEEEEE Q ss_conf 551422476776431---0002313454114544534205955504208853221-078843355434321222210200 Q gi|254780680|r 209 TGQIPKFADDMFCTT---DGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPS-FRSEAGSAGRDTRGMLRQHQFWKC 284 (430) Q Consensus 209 tG~lp~f~~~~y~~~---d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~c-fR~EaGs~GkdtrGl~RvHQF~KV 284 (430) T Consensus 263 sgH~~~f~e~my~~~~d~~~~~LrpmnCpgh~~i~~~~~~SYRdLPlRl~E~g~~syR~E~S--G-~L~GL~RVR~FTqd 339 (613) T PRK03991 263 REHADKFGERQYRVKSDKKDLMLRFAACFGQFAMLKDMTISYKNLPLKMYELSDYSFRLEQR--G-ELVGLKRLRAFTMP 339 (613) T ss_pred HHHHHHHCCCCEEEECCCHHHCCCCCCCCCCEEEECCCCCCHHHCCHHHHHHCCCEEECCCC--C-CEECEEEEECCCCC T ss_conf 56887611134256327633230445786312351024457432646776522420212567--7-44440133235668 Q ss_pred EEEECCCC-CCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCC-------HHHEE----EEEEEECCCCCCE----- Q ss_conf 21212786-5014578989999999999841067530378011784-------43402----4101101004833----- Q gi|254780680|r 285 ELVSITRE-EDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGF-------SACKT----YDLEVWLAGQNLY----- 347 (430) Q Consensus 285 E~~~~~~p-e~S~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~-------~a~~~----~DiE~w~P~~~~y----- 347 (430) T Consensus 340 DaHIFC~~~dQi~~E~~~~~~li~~v~~~fG~~y~~~~r~t~e~w~~ae~~l~~~~~~~g~~~~~e~~-~g~~~fyGPKI 418 (613) T PRK03991 340 DMHTLCKDMDEAMEEFEKQHKLILETGRDLGRDYEVAFRFTEDFYEENKDWIVELAKREGKPVLVEIL-PERKHYWVLKV 418 (613) T ss_pred CCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEC-CCCCCEECCCE T ss_conf 61131687789999999999999999986397637997078888889999999999972997147665-87631431416 Q ss_pred ---------EEEEEECCCCCHH-HHHCCCEEECCCCCCCCEEEEECCCH-HHHHHHHHHHHHHCC--CCCCCE-ECCCCC Q ss_conf ---------2375310210076-45326847338998410104200432-289999999988346--899838-658222 Q gi|254780680|r 348 ---------REISSCSTCGNFQ-SRRMNSRYRDPNSKSLKFTHTLNGSG-VAVGRCLIAILENYL--NADGSV-TIPTVL 413 (430) Q Consensus 348 ---------~Ev~S~Snc~D~Q-srRl~iry~~~~~~~~~~~htlNgt~-~A~~R~l~ailEn~q--~~dg~i-~iP~~L 413 (430) T Consensus 419 Df~v~DalGR~wq~~TiQlDf~lp~RF~l~Yv~edg~~-~~PvmiHrAi~GS~ERfi~~LiE~~ag~~~~Gk~p~~P~WL 497 (613) T PRK03991 419 EFAIIDSLGRPIENPTVQIDVENAERFGIKYVDENGKE-KYPVILHCSPTGSIERVIYALLEKAAKEEKEGKVPMLPTWL 497 (613) T ss_pred EEEEEECCCCCEEEEEEEEECCCHHHCCCEEECCCCCC-CCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC T ss_conf 89998468972450158983278322687899899989-58858972665639999999999850101247878888787 Q ss_pred CC Q ss_conf 31 Q gi|254780680|r 414 RP 415 (430) Q Consensus 414 ~p 415 (430) T Consensus 498 aP 499 (613) T PRK03991 498 SP 499 (613) T ss_pred CC T ss_conf 86 |
|
>PRK12304 thrS threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
---|
Probab=99.85 E-value=1.8e-21 Score=180.32 Aligned_cols=257 Identities=23% Similarity=0.407 Sum_probs=204.4 Q ss_pred CCCCCCHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHH Q ss_conf 62112202211731000112221675301056488999999999998622320320212356202788986551422476 Q gi|254780680|r 138 SREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFAD 217 (430) Q Consensus 138 ~k~H~elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~ 217 (430) T Consensus 208 kRDHRklGkel~LF~f~~---~~g~G~~~wlP~G~~i~~~le~~~r~~~-~~~Gy~eV~TP~i~~~~Lw~~SGH~~~Y~e 283 (604) T PRK12304 208 KRDHRKLGVEMKLFTFDD---EIGAGLPIWLPKGARLRSKLEHLLYKAH-RLRGYEPVRGPEILKSDVWKISGHYANYKE 283 (604) T ss_pred HCCHHHHHHHCCCEECCC---CCCCCCEEECCCHHHHHHHHHHHHHHHH-HHCCCEEECCCCCCCHHHHHCCCHHHHHCC T ss_conf 667888877455156255---4588753683775499999999999999-982996803865455888730551532105 Q ss_pred HHHHHH---HCCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCC Q ss_conf 776431---00023134541145445342059555042088532210788433554343212222102002121278650 Q gi|254780680|r 218 DMFCTT---DGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREED 294 (430) Q Consensus 218 ~~y~~~---d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~ 294 (430) T Consensus 284 ~Mf~~~~d~~~y~lKPMNCP~H~~if~~~~rSYRdLPlR~aEfg~~hR~E~--SG-~L~GL~RvR~FtqDDaHIFc~~dQ 360 (604) T PRK12304 284 NMYFTTIDEQEYGIKPMNCVGHIKVYQSDLRSYRDLPLKFFEYGVVHRHEK--SG-VLHGLFRVREFTQDDAHIFCMPSQ 360 (604) T ss_pred CCCEEECCCCEEECCCCCCHHHHHHHHCCCCCHHHCCHHHHHCCCEECCCC--CC-CCCCCCCCCCCCCCCCEEECCHHH T ss_conf 764450577433036779574999986277444435555454353202677--76-634645577897788446548999 Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCCHHHEEEEEEEECCCC--------------------CCE-E---E- Q ss_conf 14578989999999999841067530378011784434024101101004--------------------833-2---3- Q gi|254780680|r 295 SFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQ--------------------NLY-R---E- 349 (430) Q Consensus 295 S~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~~a~~~~DiE~w~P~~--------------------~~y-~---E- 349 (430) T Consensus 361 i~~Ei~~~l~~~~~vy~~fGf~~~~-~lstrp----ek~~G~de~W~~Ae~~L~~aL~~~g~~y~~~~GegAFYGPKID~ 435 (604) T PRK12304 361 IKEEVLEILDFVDKIMKAFDFSYEM-EISTKP----AKAIGDDEVWEKATKALKEALDENGLKYGIDEGGGAFYGPKIDI 435 (604) T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEE-EECCCC----CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCEEE T ss_conf 9999999999999999745961999-976886----33479889999999999999996499866574855203211017 Q ss_pred -E-------EEECC-CCCHH-HHHCCCEEECCCCCCCCEEEEE----CCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCC Q ss_conf -7-------53102-10076-4532684733899841010420----043228999999998834689983865822231 Q gi|254780680|r 350 -I-------SSCST-CGNFQ-SRRMNSRYRDPNSKSLKFTHTL----NGSGVAVGRCLIAILENYLNADGSVTIPTVLRP 415 (430) Q Consensus 350 -v-------~S~Sn-c~D~Q-srRl~iry~~~~~~~~~~~htl----Ngt~~A~~R~l~ailEn~q~~dg~i~iP~~L~p 415 (430) T Consensus 436 ~v~DalgR~wq~~TIQlDf~lPeRF~l~Y~~~dg~~-~rPVmIHRAilGS---~ERfiaiLiEh~~G~-----~P~WLaP 506 (604) T PRK12304 436 KITDALKRKWQCGTIQVDFNLPERFKLEYTDENNEK-KQPVMIHRAILGS---FERFIGILTEHFAGE-----FPFFIAP 506 (604) T ss_pred EEECCCCCHHHHHHHHHHHHCHHHCCCEEECCCCCC-CCCEEEEEECCCC---HHHHHHHHHHHCCCC-----CCCCCCC T ss_conf 986224889887788887636431573898889983-6778997203577---899999999980899-----9857576 |
|
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
---|
Probab=99.73 E-value=1.4e-17 Score=151.30 Aligned_cols=265 Identities=23% Similarity=0.340 Sum_probs=207.0 Q ss_pred CCCCCCCHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHH Q ss_conf 66211220221173100011222167530105648899999999999862232032021235620278898655142247 Q gi|254780680|r 137 LSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFA 216 (430) Q Consensus 137 ~~k~H~elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~ 216 (430) T Consensus 188 ~krdHrklg~el~LF~~~~---~~~~G~~~~~pkG~~ir~~le~y~~~~~-~~~Gy~~V~TP~~~~~~l~~~SGH~~~y~ 263 (589) T COG0441 188 KKRDHRKLGKELDLFSFSP---EEGPGLPFWHPKGATIRNLLEDYVRTKL-RSYGYQEVKTPVLADLELWELSGHWDNYK 263 (589) T ss_pred CCCCHHHHHHHHCCEEECC---CCCCCCEEECCCCCCHHHHHHHHHHHHH-HHCCCEEECCCEEEECCCCHHCCCHHHCC T ss_conf 2786476877621434144---4588506987884669999999999898-75585271287363000010112045513 Q ss_pred HHHHHHH---HCCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCC-CCCCCCCCCEEEEEEEEEEEEEECCCC Q ss_conf 6776431---000231345411454453420595550420885322107884-335543432122221020021212786 Q gi|254780680|r 217 DDMFCTT---DGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEA-GSAGRDTRGMLRQHQFWKCELVSITRE 292 (430) Q Consensus 217 ~~~y~~~---d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~Ea-Gs~GkdtrGl~RvHQF~KVE~~~~~~p 292 (430) T Consensus 264 e~mf~~~~~~~~~~lKpmNCpgh~~ifk~~~~SYR~LP~r~~E~g~v~R~E~SGa----l~GL~RvR~ftqdD~Hifc~~ 339 (589) T COG0441 264 EDMFLTESDDREYALKPMNCPGHILIFKSGLRSYRELPLRLAEFGYVYRYEKSGA----LHGLMRVRGFTQDDAHIFCTP 339 (589) T ss_pred CCCEEECCCCHHHEEEECCCHHHHHHHHCCCCCEECCCHHHHHCCEEECCCCCCH----HHCCCCCCCEEECCCCEECCH T ss_conf 6606621377233064107876899985378611004404331442211567642----222400113224562014046 Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCH-HHHCCCCCHH--CC-------C-----HHHEEEEEEEECC-CCCCEE-------- Q ss_conf 501457898999999999984106-7530378011--78-------4-----4340241011010-048332-------- Q gi|254780680|r 293 EDSFTEHERMLSCAEEILKRLDLH-YRVVSLCTGD--LG-------F-----SACKTYDLEVWLA-GQNLYR-------- 348 (430) Q Consensus 293 e~S~~~~e~~~~~~~~i~~~L~lp-yRvv~~~sgd--lg-------~-----~a~~~~DiE~w~P-~~~~y~-------- 348 (430) T Consensus 340 dQi~~E~~~~~~~i~~v~~~fg~~~y~~-~ls~r~k~ig~d~~W~~a~~~l~~al~~~~~~~~~~~G~gaFyGPKid~~v 418 (589) T COG0441 340 DQIKDEFKGILELILEVYKDFGFTDYEV-KLSTRPKFIGSDEMWDKAEAALREALKEIGVEYVEEPGEGAFYGPKIDFQV 418 (589) T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEE-EEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEECCCCEEEECCCCCEEE T ss_conf 7889999999999999998469753799-996477646873556778899998887608603646873579776642488 Q ss_pred -----EEEEECC-CCCHHHH-HCCCEEECCCCCCCCEEEEE-CCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCC Q ss_conf -----3753102-1007645-32684733899841010420-0432289999999988346899838658222310 Q gi|254780680|r 349 -----EISSCST-CGNFQSR-RMNSRYRDPNSKSLKFTHTL-NGSGVAVGRCLIAILENYLNADGSVTIPTVLRPY 416 (430) Q Consensus 349 -----Ev~S~Sn-c~D~Qsr-Rl~iry~~~~~~~~~~~htl-Ngt~~A~~R~l~ailEn~q~~dg~i~iP~~L~py 416 (430) T Consensus 419 ~Dalgr~~q~~TIQlDf~lpeRF~l~Yv~~d~~~-~~PvmiHrai~GSiERfi~iLiE~~~---G--~~P~WLaPv 488 (589) T COG0441 419 KDALGREWQLGTIQLDFNLPERFDLEYVDEDGEK-KRPVIIHRAILGSIERFIGILLEHYA---G--ALPTWLAPV 488 (589) T ss_pred EECCCCCEECCEEEEECCCHHHCEEEEECCCCCC-CCCEEEEECCCHHHHHHHHHHHHHCC---C--CCCCCCCCC T ss_conf 7356861005617870377242147998577875-38789992464148999999998646---9--887657851 |
|
>PRK08661 prolyl-tRNA synthetase; Provisional | Back alignment and domain information |
---|
Probab=99.71 E-value=2.7e-16 Score=141.81 Aligned_cols=260 Identities=20% Similarity=0.256 Sum_probs=219.0 Q ss_pred CCHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHH-HHHHCHHHHHHHH Q ss_conf 220221173100011222167530105648899999999999862232032021235620278898-6551422476776 Q gi|254780680|r 142 FEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMY-GTGQIPKFADDMF 220 (430) Q Consensus 142 ~elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~-gtG~lp~f~~~~y 220 (430) T Consensus 20 ~~vi~~a~l~d~---~~V--kG~~v~~P~g~~iw~~i~~~~~~-~~~~~g~~~~~fP~liP~~~l~kE~~hvegF~pE~~ 93 (478) T PRK08661 20 TDVVKKAELADY---SPV--KGCMVIRPYGYAIWENIQKILDE-MFKETGHENVYFPLLIPESLLQKEAEHIEGFAPEVA 93 (478) T ss_pred HHHHHHHCCCCC---CCC--CEEEEECCCHHHHHHHHHHHHHH-HHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCEEE T ss_conf 999997187323---688--72799787489999999999999-998639808730240668999866656615674048 Q ss_pred HH--------HHCCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECC-C Q ss_conf 43--------10002313454114544534205955504208853221078843355434321222210200212127-8 Q gi|254780680|r 221 CT--------TDGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSIT-R 291 (430) Q Consensus 221 ~~--------~d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~-~ 291 (430) T Consensus 94 ~VT~~G~~~l~~~l~lrPTsEt~i~~~~~~wI~SyrdLPl~l~Qw~~v~R~E~-----r~r~flR~rEFl~qe~ht~h~t 168 (478) T PRK08661 94 WVTHGGGEKLEEPLALRPTSETIIYPMFKKWIQSYRDLPLLYNQWVNVVRWEK-----KTRPFLRTREFLWQEGHTAHAT 168 (478) T ss_pred EEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCC-----CCCCHHHHHHHHHHCCCCCCCC T ss_conf 99547875556763108887999999999985236526900020044586578-----8963143426354212011399 Q ss_pred CCCHHHHHHHHHHHHHHHHH-HHCCHHHHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCCEEEC Q ss_conf 65014578989999999999-84106753037801178443402410110100483323753102100764532684733 Q gi|254780680|r 292 EEDSFTEHERMLSCAEEILK-RLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYRD 370 (430) Q Consensus 292 pe~S~~~~e~~~~~~~~i~~-~L~lpyRvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry~~ 370 (430) T Consensus 169 ~eea~~~~~~~~~~Y~~~~e~~LaiPvi~g~k~~~ekFaGa~~T~~iea~m~d-GkaLQ~gtsH~LGq~fskaf~i~f~d 247 (478) T PRK08661 169 EEEAEEETLEMLEIYKEFAEDYLAIPVIIGKKTEWEKFAGADYTYTIEAMMPD-GKALQIGTSHYLGQNFAKAFDIKFQD 247 (478) T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCEEEEECCC-CCEEECCCEECCCHHHHHHCCCEEEC T ss_conf 99999999999999999999837875563777830217898654205887268-86311431421622356754969988 Q ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCC Q ss_conf 89984101042004322899999999883468998386582223101 Q gi|254780680|r 371 PNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYM 417 (430) Q Consensus 371 ~~~~~~~~~htlNgt~~A~~R~l~ailEn~q~~dg~i~iP~~L~pym 417 (430) T Consensus 248 ~~g~-~~~~~~t-s~Gis-tR~iga~Im~H~Dd~G-lvlPp~iAP~q 290 (478) T PRK08661 248 KDGK-LEYVHQT-SWGVS-TRLIGALIMVHGDDKG-LVLPPKIAPIQ 290 (478) T ss_pred CCCC-EEEEEEE-CCCHH-HHHHHHHHHHHCCCCC-CCCCHHHCCCC T ss_conf 9998-8678875-34542-7899999998479986-51784559830 |
|
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
---|
Probab=99.69 E-value=8.9e-17 Score=145.41 Aligned_cols=262 Identities=23% Similarity=0.281 Sum_probs=208.5 Q ss_pred CCCCCCCCCHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHH Q ss_conf 56662112202211731000112221675301056488999999999998622320320212356202788986551422 Q gi|254780680|r 135 IHLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPK 214 (430) Q Consensus 135 ~f~~k~H~elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~ 214 (430) T Consensus 17 da~~~sh~-ll~rAg~i~~------~~~G~y~~lP~g~rv~~kI~~iir~-em~~~G~~Evl~P~L~p~eLwkEs~r~~~ 88 (500) T COG0442 17 DASEWSHQ-LLLRAGMIRK------PVKGLYVWLPLGLRVLEKIENIIRE-EMDKIGAQEVLFPTLIPAELWKESGRWEG 88 (500) T ss_pred HHHHHHHH-HHHHCCCEEE------CCCCEEEECCCHHHHHHHHHHHHHH-HHHHCCCEEEECHHCCHHHHHHHHCHHHC T ss_conf 23799999-9986686020------2571699776589999999999999-99860850883110587899987485630 Q ss_pred HHHHHHHHHH----CCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECC Q ss_conf 4767764310----002313454114544534205955504208853221078843355434321222210200212127 Q gi|254780680|r 215 FADDMFCTTD----GRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSIT 290 (430) Q Consensus 215 f~~~~y~~~d----~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~ 290 (430) T Consensus 89 f~~El~~v~drg~~~l~L~PTsEe~it~~~~~~i~SYkdLPl~lYQi~~kfRdE~----rpr~gllR~REF~mkdaySfh 164 (500) T COG0442 89 FGPELFRVKDRGDRPLALRPTSEEVITDMFRKWIRSYKDLPLKLYQIQSKFRDEK----RPRFGLLRGREFLMKDAYSFH 164 (500) T ss_pred CCHHHEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCC----CCCCCCCCHHEEEECCCCCCC T ss_conf 3644489971699634357886899999999986556518812101345884334----688773000203301112102 Q ss_pred -CCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHC-CCEE Q ss_conf -86501457898999999999984106753037801178443402410110100483323753102100764532-6847 Q gi|254780680|r 291 -REEDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRM-NSRY 368 (430) Q Consensus 291 -~pe~S~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl-~iry 368 (430) T Consensus 165 ~~~e~a~~~y~~~~~~Y~~if~~i~l~~~~~~ad~g~~Gg~~S--~eF~~l~pd~-ge~qi~ts~~y~aN~e~a~~~~~~ 241 (500) T COG0442 165 ADEEDAEETYEKMLDAYSRIFLRLPLIFGPVPADEGFIGGSYS--HEFEALMPDG-GEDQIATSHHYGANFEKAFIDIKF 241 (500) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCC--EEEEEECCCC-CCCEEEEECCHHHHHHHHCCCCCC T ss_conf 8989999999999999999998589538862566778887653--6999985689-854799806266668774467775 Q ss_pred ECCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCEECCCCCC Q ss_conf 3389984101042004322899999999883468998386582223 Q gi|254780680|r 369 RDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLR 414 (430) Q Consensus 369 ~~~~~~~~~~~htlNgt~~A~~R~l~ailEn~q~~dg~i~iP~~L~ 414 (430) T Consensus 242 ~~~~~~~~~~v~t~--s~~~s~r~~~~~i~i~GDn~G~v-~Pp~vA 284 (500) T COG0442 242 EDEEEGELEYVHTT--SYGISTRIIGAAILIHGDNEGLV-LPPIVA 284 (500) T ss_pred CCCCCCCCEEECCC--CEEEEEEEEEEEEEEECCCCCCC-CCCHHC T ss_conf 56665541475146--26887400158999714887764-875004 |
|
>KOG2324 consensus | Back alignment and domain information |
---|
Probab=99.61 E-value=6.7e-15 Score=131.44 Aligned_cols=269 Identities=24% Similarity=0.353 Sum_probs=208.4 Q ss_pred CHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHH Q ss_conf 20221173100011222167530105648899999999999862232032021235620278898655142247677643 Q gi|254780680|r 143 EIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCT 222 (430) Q Consensus 143 elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~ 222 (430) T Consensus 29 ~LL~e~GfI~------ps~~G~yq~LPlg~R~~~K~~~~-l~~~mqs~Ga~kIslp~ls~~~LWekTgRw~~~gsEl~rl 101 (457) T KOG2324 29 ELLQEVGFIR------PSSPGLYQLLPLGLRVLNKLCRL-LDNEMQSGGAQKISLPILSSKELWEKTGRWDAMGSELFRL 101 (457) T ss_pred HHHHHHCCCC------CCCCCCEEECCCHHHHHHHHHHH-HHHHHHHCCCEEEEECCCCHHHHHHHCCCCCCCCHHHEEE T ss_conf 9999707101------48987012130037999999999-9999872367057404468689987618511246045375 Q ss_pred HH----CCEECCCCCCHHHHHHHHHCC-CHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCC-CCCHH Q ss_conf 10----002313454114544534205-9555042088532210788433554343212222102002121278-65014 Q gi|254780680|r 223 TD----GRWLIPTSEVSLTNLYSHEII-ESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITR-EEDSF 296 (430) Q Consensus 223 ~d----~l~Li~TaEvpL~~~~~~~~l-~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~-pe~S~ 296 (430) T Consensus 102 ~Dr~gkq~cL~pThEE~iT~lmat~~~lsykqlPi~vYQigrKfRDElrpRf----GLlRgREFlMKDmYsFd~~~etA~ 177 (457) T KOG2324 102 HDRKGKQMCLTPTHEEDITALMATYIPLSYKQLPIRVYQIGRKFRDELRPRF----GLLRGREFLMKDMYSFDSDEETAQ 177 (457) T ss_pred ECCCCCEECCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECHHHHHCCCCCC----CCHHHHHHHHHHHHCCCCCHHHHH T ss_conf 1047877305775489999999862743220286776650545441347542----301247888765330258888999 Q ss_pred HHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCCHHHEEEEEEEE--------CCCC-----CC---EEEEEEECCCCC-- Q ss_conf 57898999999999984106753037801178443402410110--------1004-----83---323753102100-- Q gi|254780680|r 297 TEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVW--------LAGQ-----NL---YREISSCSTCGN-- 358 (430) Q Consensus 297 ~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~~a~~~~DiE~w--------~P~~-----~~---y~Ev~S~Snc~D-- 358 (430) T Consensus 178 qTy~~v~~aY~~iFkqL~~pfVkv~AdsG~iGG~vShEfhl~~~vgED~l~~C~~C~~s~n~e~~~~sk~~~Cp~C~~~~ 257 (457) T KOG2324 178 QTYQLVDQAYDRIFKQLGLPFVKVWADSGDIGGEVSHEFHLIHPVGEDTLMSCPSCGYSKNSEDLDLSKIASCPKCNEGR 257 (457) T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCEEECCCCCCCCCHHHHCCCCCCCCCCCCCCC T ss_conf 99999999999999973997699860356647610125752576675003446767755760121377656687656777 Q ss_pred -----------------HHHHHCCCEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCEE Q ss_conf -----------------764532684733899841010420043228999999998834689983865822231018801 Q gi|254780680|r 359 -----------------FQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYMNNLA 421 (430) Q Consensus 359 -----------------~QsrRl~iry~~~~~~~~~~~htlNgt~~A~~R~l~ailEn~q~~dg~i~iP~~L~pym~g~~ 421 (430) T Consensus 258 L~~~~~IEVgHtF~LG~kYS~~lna~f~~~~gK-pe~l~Mg-CyGIGVtRllaAa~evls~~~~-lrwP~~iAPy~--vc 332 (457) T KOG2324 258 LTKTKSIEVGHTFLLGTKYSKPLNAKFVNVEGK-PEFLHMG-CYGIGVTRLLAAAAEVLSDDKG-LRWPSLIAPYK--VC 332 (457) T ss_pred CCCCCCEEEEEEEEECCCCCCCCCCEEEEECCC-CCEEEEC-CEECCHHHHHHHHHHHHCCCCC-CCCCCCCCCCE--EE T ss_conf 511243477778871430154347655440598-4068740-2000489899999998156554-31500027513--47 Q ss_pred EECCCC Q ss_conf 307334 Q gi|254780680|r 422 VIKKEH 427 (430) Q Consensus 422 ~i~~~~ 427 (430) T Consensus 333 li~pk~ 338 (457) T KOG2324 333 LIGPKK 338 (457) T ss_pred EECCCC T ss_conf 853688 |
|
>PRK00960 seryl-tRNA synthetase; Provisional | Back alignment and domain information |
---|
Probab=99.59 E-value=3.8e-14 Score=125.88 Aligned_cols=281 Identities=21% Similarity=0.338 Sum_probs=213.5 Q ss_pred EEEEECCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCH Q ss_conf 42000156566566621122022117310001122216753010564889999999999986223203202123562027 Q gi|254780680|r 124 LIRSVGKKPSAIHLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRD 203 (430) Q Consensus 124 ~i~~~G~~~~f~f~~k~H~elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~ 203 (430) T Consensus 181 iv~e-s~~re~~F~-~DPTeea~k~GWvK-----~f~gRGQW~y~P~~t~LFRafE~ii~Ee~i~~lGf~e~lFPKLipl 253 (516) T PRK00960 181 IVSE-SAPREITFD-GDPTEEAEKLGWVK-----RFPGRGQWFYTPPMAKLFRAFEEIILEECIEKLGFDECLFPKLIPL 253 (516) T ss_pred CCCC-CCCCCCCCC-CCHHHHHHHCCCHH-----CCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCHH T ss_conf 1035-677433578-98279998626042-----1888874243775889999999999999743237610001345529 Q ss_pred HHHHHHHHCHHHHHHHHHHH----H-------CCEECCCCCCHH----------------------HHHHHHHCCCHHHH Q ss_conf 88986551422476776431----0-------002313454114----------------------54453420595550 Q gi|254780680|r 204 EAMYGTGQIPKFADDMFCTT----D-------GRWLIPTSEVSL----------------------TNLYSHEIIESKSL 250 (430) Q Consensus 204 ~~~~gtG~lp~f~~~~y~~~----d-------~l~Li~TaEvpL----------------------~~~~~~~~l~~~~L 250 (430) T Consensus 254 evm~kmryleGlp~gmYYVCpPKRDPe~feef~~e~~i~~EiPi~~lKe~l~~P~yvlapAQCePFy~fl~~e~v~~d~l 333 (516) T PRK00960 254 DVMYKMRYLEGLPEGMYYVCPPKRDPEMFEEFVNEMMIKKEIPIDLLKEKLRDPGYVLAPAQCEPFYQFLDHELVDVDEL 333 (516) T ss_pred HHHHHHCCCCCCCCCCEEECCCCCCHHHHHHHHHHHEEECCCCHHHHHHHHCCCCCEEEECCCCCHHHHHCCCCCCCCCC T ss_conf 99977330126998727866998986899999777334053668999986128861351024993788736772565558 Q ss_pred CCEEEEEE-CCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCH-HHHCCCC----- Q ss_conf 42088532-2107884335543432122221020021212786501457898999999999984106-7530378----- Q gi|254780680|r 251 PLRFTTLA-PSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLH-YRVVSLC----- 323 (430) Q Consensus 251 Pik~~~~s-~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~lp-yRvv~~~----- 323 (430) T Consensus 334 Pik~FDrSGwtyRwE~GG----~~GleRV~EF~RiE~VW~gtpe~ve~~r~~~~~y~~~~ae~LdLE~w~ev~ddPfyle 409 (516) T PRK00960 334 PIKFFDKSGWTYRWEGGG----AKGLDRVNEFLRIECVWMGTPEFVEEVRDDTLKYAHILAEKLDLEYWTEVGDDPFYLE 409 (516) T ss_pred CEEEEECCCCEEEECCCC----CCCHHHHHHHHEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCHHHHEEECCCCHHHC T ss_conf 657885588626404787----4323555010147778846889999998889999999887743244223056750322 Q ss_pred -----CHHCCCHHHEEEEEEEECCC---CCCEEEEEEECCCCCHHHHHCCCEEECCCCCCCCEEEEECCCHHHHHHHHHH Q ss_conf -----01178443402410110100---4833237531021007645326847338998410104200432289999999 Q gi|254780680|r 324 -----TGDLGFSACKTYDLEVWLAG---QNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIA 395 (430) Q Consensus 324 -----sgdlg~~a~~~~DiE~w~P~---~~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~~~~~htlNgt~~A~~R~l~a 395 (430) T Consensus 410 gr~~e~r~iE~p~vp~ye~~~~LP~~~~e~k~v~v~s~nVhG~hf~eGF~V--K~~~g~~---~Wt-GCtG~GL~RWv~g 483 (516) T PRK00960 410 GRKLEDRGIEFPDVPKYEMRLWLPHIKEERKGVAVTSANIHGTHFVEGFNV--KDYKGRK---LWT-GCTGVGLTRWVIG 483 (516) T ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEECCCCCCCCCCC--EECCCCE---EEC-CCCCCCHHHHHHH T ss_conf 565445564368888546799657647767726888863147535676522--0035873---113-7764457899999 Q ss_pred HHHHCCC-CCCCEECCCCCCCCCCCEEEEC Q ss_conf 9883468-9983865822231018801307 Q gi|254780680|r 396 ILENYLN-ADGSVTIPTVLRPYMNNLAVIK 424 (430) Q Consensus 396 ilEn~q~-~dg~i~iP~~L~pym~g~~~i~ 424 (430) T Consensus 484 FLAQ~Gfd~~~---WPe~i~~rvge~pe~~ 510 (516) T PRK00960 484 FLAQKGFDPDN---WPEEIRKRVGELPEIP 510 (516) T ss_pred HHHHCCCCCCC---CCHHHHHHHHCCCCCC T ss_conf 99870798121---6499998862567665 |
|
>KOG1637 consensus | Back alignment and domain information |
---|
Probab=99.55 E-value=3e-14 Score=126.65 Aligned_cols=246 Identities=23% Similarity=0.366 Sum_probs=186.4 Q ss_pred CCCCCCHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHH Q ss_conf 62112202211731000112221675301056488999999999998622320320212356202788986551422476 Q gi|254780680|r 138 SREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFAD 217 (430) Q Consensus 138 ~k~H~elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~ 217 (430) T Consensus 162 ~rdHRkig~~qeLfff~~lS--PGS--~FflP~G~~iyN~Lv~fir~e-y~~rGf~EVitPniy~~~LWe~SGHwqnY~e 236 (560) T KOG1637 162 KRDHRKIGKEQELFFFHELS--PGS--CFFLPHGTRIYNTLVDFIRAE-YRKRGFTEVITPNIYNKKLWETSGHWQNYSE 236 (560) T ss_pred HHHHHHHHHHHHHEEECCCC--CCC--EEECCCCCHHHHHHHHHHHHH-HHHCCCCEECCCCHHHHHHHHHCCCHHHHHH T ss_conf 10055540222202413579--862--453148642788999999999-8753874322722121566653252555443 Q ss_pred HHHHHH---HCCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCC-CCCCCCCCCEEEEEEEEEEEEEECCCCC Q ss_conf 776431---000231345411454453420595550420885322107884-3355434321222210200212127865 Q gi|254780680|r 218 DMFCTT---DGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEA-GSAGRDTRGMLRQHQFWKCELVSITREE 293 (430) Q Consensus 218 ~~y~~~---d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~Ea-Gs~GkdtrGl~RvHQF~KVE~~~~~~pe 293 (430) T Consensus 237 nmF~~e~eke~~~LKPMNCPgHcLmf~~r~rS~reLPlR~aDFg~LHRnE~SGa----LsGLTRvRrFqQDDaHIFCt~~ 312 (560) T KOG1637 237 NMFKFEVEKEEFALKPMNCPGHCLMFAHRDRSYRELPLRFADFGVLHRNEASGA----LSGLTRVRRFQQDDAHIFCTPD 312 (560) T ss_pred HCEEEEECHHHHCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCEEEECCCCCC----CCCCCEEEEECCCCCEEEECCC T ss_conf 101231010332258668975301336677427447842267522530545642----3221011011015715885576 Q ss_pred CHHHHHHHHHHHHHHHHHHHCCHHHHCCCCC---HHCCCHHHEEEEEEEECC--------------------CCCC-EEE Q ss_conf 0145789899999999998410675303780---117844340241011010--------------------0483-323 Q gi|254780680|r 294 DSFTEHERMLSCAEEILKRLDLHYRVVSLCT---GDLGFSACKTYDLEVWLA--------------------GQNL-YRE 349 (430) Q Consensus 294 ~S~~~~e~~~~~~~~i~~~L~lpyRvv~~~s---gdlg~~a~~~~DiE~w~P--------------------~~~~-y~E 349 (430) T Consensus 313 Qi~~Eik~~l~fl~~vY~~fgf~f~l~-lSTRPe~~lG-------~l~~Wd~AE~~L~~al~e~g~pw~lN~GDGAFYGP 384 (560) T KOG1637 313 QVKEEIKGCLDFLDYVYGVFGFTFKLN-LSTRPEKFLG-------DLETWDEAEFKLEEALNESGEPWVLNPGDGAFYGP 384 (560) T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCEEE-ECCCHHHHCC-------CHHHHHHHHHHHHHHHHHHCCCCEECCCCCCEECC T ss_conf 379999879999999986125420257-4167587665-------78889999999999999709971422898530264 Q ss_pred -------------EEEECCCCCHHHH-HCCCEEECCCCCC--CCEEEE-ECCCHHHHHHHHHHHHHHCCCC Q ss_conf -------------7531021007645-3268473389984--101042-0043228999999998834689 Q gi|254780680|r 350 -------------ISSCSTCGNFQSR-RMNSRYRDPNSKS--LKFTHT-LNGSGVAVGRCLIAILENYLNA 403 (430) Q Consensus 350 -------------v~S~Snc~D~Qsr-Rl~iry~~~~~~~--~~~~ht-lNgt~~A~~R~l~ailEn~q~~ 403 (430) T Consensus 385 KIDi~l~Dal~r~hQcaTIQLDFqLP~rFdL~y~~~~g~~erPVmIHRAIlGS---vERmiaiL~E~~~gk 452 (560) T KOG1637 385 KIDITLDDALGRKHQCATIQLDFQLPIRFDLEYETEDGDLERPVMIHRAILGS---VERMIAILLESYGGK 452 (560) T ss_pred EEEEEHHHHCCCCCCEEEEEECCCCHHHCCCEEECCCCCCCCHHHHHHHHHHH---HHHHHHHHHHHHCCC T ss_conf 33257243327610102566313673331751104666523123589987521---999999999970799 |
|
>TIGR00408 proS_fam_I prolyl-tRNA synthetase; InterPro: IPR004499 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
---|
Probab=99.29 E-value=1.4e-11 Score=106.90 Aligned_cols=258 Identities=20% Similarity=0.285 Sum_probs=208.1 Q ss_pred CHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHC-------------------CCCEEHHHHHCCH Q ss_conf 202211731000112221675301056488999999999998622320-------------------3202123562027 Q gi|254780680|r 143 EIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEH-------------------GYTEVSAPLLVRD 203 (430) Q Consensus 143 elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~-------------------Gy~~v~~P~lv~~ 203 (430) T Consensus 14 ~il~kAel~d~RypV--KG--~~v~~P~g~~iw~~iq~~-~~~~~~~~~~~~~~~L~~F~P~~~~~Y~h~~v~fP~L~p~ 88 (533) T TIGR00408 14 QILQKAELIDYRYPV--KG--CYVFLPYGFKIWENIQKI-LRDKLDEIKLKDKVILKKFIPIESLPYGHEEVYFPMLIPE 88 (533) T ss_pred HHHHCCEEEEECCCC--CC--EEEECCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHEECCCCCCH T ss_conf 987305576641760--10--378459877899999999-9999987643546766405677777777001005644525 Q ss_pred HHHHHHH-HCHHHHHHHHHHH--------HCCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCC Q ss_conf 8898655-1422476776431--------000231345411454453420595550420885322107884335543432 Q gi|254780680|r 204 EAMYGTG-QIPKFADDMFCTT--------DGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRG 274 (430) Q Consensus 204 ~~~~gtG-~lp~f~~~~y~~~--------d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrG 274 (430) T Consensus 89 ~~L~KEk~HikGF~pEv~wi~~~G~~~L~~pLaLRPTSEt~~y~m~~kWv~sy~DLPlk~nQw~~vfR~E~----kHTRP 164 (533) T TIGR00408 89 SELEKEKDHIKGFEPEVYWITHGGLKKLDEPLALRPTSETAMYNMYKKWVKSYRDLPLKINQWVNVFRYEK----KHTRP 164 (533) T ss_pred HHHHHHCCCCCCCCCHHHHEECCCCCCCCCCCEECCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCC----CCCCC T ss_conf 57863213568858400210103777246750125861788876578785121588768984358898021----78786 Q ss_pred EEEEEEEE-EEEEE-ECCCCCCHHHHHHHHHHHHHHHHH-HHCCHHHHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEE Q ss_conf 12222102-00212-127865014578989999999999-8410675303780117844340241011010048332375 Q gi|254780680|r 275 MLRQHQFW-KCELV-SITREEDSFTEHERMLSCAEEILK-RLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREIS 351 (430) Q Consensus 275 l~RvHQF~-KVE~~-~~~~pe~S~~~~e~~~~~~~~i~~-~L~lpyRvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~ 351 (430) T Consensus 165 flR~rEf~twqE~HT~H~t~~eAee~v~~~~~~Yk~f~~~~LaIP~~~g~k~E~eKFaGA~~T~~~e~imPDgG~~LQ~A 244 (533) T TIGR00408 165 FLRTREFLTWQEAHTAHATAEEAEEEVLKALDLYKEFIENLLAIPYFVGRKSEKEKFAGAEYTWTFETIMPDGGRTLQIA 244 (533) T ss_pred CHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCEEEEEECCCCCEEHHHH T ss_conf 10233321010001314377788999999999889997502886468714887554788762235675247765001221 Q ss_pred EECCCCCHHHHHCCCEEECCCC---CCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCEECCCCC Q ss_conf 3102100764532684733899---8410104200432289999999988346899838658222 Q gi|254780680|r 352 SCSTCGNFQSRRMNSRYRDPNS---KSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVL 413 (430) Q Consensus 352 S~Snc~D~QsrRl~iry~~~~~---~~~~~~htlNgt~~A~~R~l~ailEn~q~~dg~i~iP~~L 413 (430) T Consensus 245 TsH~LGqnF~K~F~i~fe~p~Gs~~~~-~~ayq~-s~G~-StR~igali~~HsD~~GLV-LPp~v 305 (533) T TIGR00408 245 TSHDLGQNFAKTFDIKFENPTGSDMDK-VYAYQT-SYGI-STRVIGALILIHSDEKGLV-LPPRV 305 (533) T ss_pred HHHHHHCCCEEEEEEEEECCCCCCCCC-CCCEEC-CCCH-HHHHHHHEEEEECCCCCCC-CCCCC T ss_conf 211330354020367887788897641-010010-1335-7887545000122677751-67012 |
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by IPR002314 from INTERPRO, which recognises tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi (Lyme desease spirochete). The other family, IPR004500 from INTERPRO, includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis sp. (strain PCC6803), and one of the two prolyl-tRNA synthetases of Saccharomyces cerevisiae (Baker's yeast).; GO: 0000166 nucleotide binding, 0004827 proline-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006433 prolyl-tRNA aminoacylation, 0005737 cytoplasm. |
>TIGR00415 serS_MJ seryl-tRNA synthetase; InterPro: IPR004503 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
---|
Probab=98.99 E-value=3.7e-09 Score=88.81 Aligned_cols=265 Identities=20% Similarity=0.337 Sum_probs=205.7 Q ss_pred EEEECCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHH Q ss_conf 20001565665666211220221173100011222167530105648899999999999862232032021235620278 Q gi|254780680|r 125 IRSVGKKPSAIHLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDE 204 (430) Q Consensus 125 i~~~G~~~~f~f~~k~H~elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~ 204 (430) T Consensus 182 ~~~~~~~~~~~~~-~dp~~~~~~~gw~~-----~~pg~g~w~~~p~~~~~~~~~~~~~~~~~~~~~g~~~c~~p~~~p~~ 255 (520) T TIGR00415 182 VAEYKAKRDFFFD-GDPTDEAEKLGWVK-----KFPGRGQWFYGPPITALFRALEELFVEEVVKPLGFVECLFPKLIPLD 255 (520) T ss_pred HHHHHHCCCEEEC-CCCHHHHHHHCCHH-----CCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH T ss_conf 3321100120005-77345676611011-----26887620016506788888998889887654011345310010267 Q ss_pred HHHHHHHCHHHHHHHHHH--------------------------------HH-CCEECCCCCCHHHHHHHHHCCCHHHHC Q ss_conf 898655142247677643--------------------------------10-002313454114544534205955504 Q gi|254780680|r 205 AMYGTGQIPKFADDMFCT--------------------------------TD-GRWLIPTSEVSLTNLYSHEIIESKSLP 251 (430) Q Consensus 205 ~~~gtG~lp~f~~~~y~~--------------------------------~d-~l~Li~TaEvpL~~~~~~~~l~~~~LP 251 (430) T Consensus 256 ~~~~~~~~~g~p~g~~~~~~p~~~p~~~~~~~~~~~~~~~~p~~~~~~~~~dpg~~~~p~~c~p~~~~~~~~~~~~~d~p 335 (520) T TIGR00415 256 ILYKLRYLEGLPEGLYYCCPPKRDPELFEEFKNELLINKEVPLDLLKNGLKDPGYVLAPAQCEPFYQFLEGEVVDAEDLP 335 (520) T ss_pred HHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEECCCCCCHHHHHHCCCCCCCCCCC T ss_conf 77776764136545255227755635789876655420035578987530487704303110035675412110000143 Q ss_pred CEEEEE-ECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHC---------C Q ss_conf 208853-221078843355434321222210200212127865014578989999999999841067530---------3 Q gi|254780680|r 252 LRFTTL-APSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLHYRVV---------S 321 (430) Q Consensus 252 ik~~~~-s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~lpyRvv---------~ 321 (430) T Consensus 336 ~~~~d~~gw~~~w~~gg----~~g~d~~~~~~~~~~~w~~~p~~~~~~~d~~~~~~~~~~~~~~~~~~~~~gddp~~~~g 411 (520) T TIGR00415 336 VKFFDRSGWTYRWEGGG----AKGLDRVNEFLRVELVWLGEPGFTEETRDKTLELAEDLADELDLEWWTEVGDDPFYLEG 411 (520) T ss_pred EEEECCCCCEEEECCCC----CCCHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCEEECC T ss_conf 11220577424423766----32124554533111355147520123334456655555554100110011786301036 Q ss_pred C--CCHHCCCHHHEEEEEEEECCCCC---CEEEEEEECCCCCHHHHHCCCEEECCCCCCCCEEEEECCCHHHHHHHHHHH Q ss_conf 7--80117844340241011010048---332375310210076453268473389984101042004322899999999 Q gi|254780680|r 322 L--CTGDLGFSACKTYDLEVWLAGQN---LYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAI 396 (430) Q Consensus 322 ~--~sgdlg~~a~~~~DiE~w~P~~~---~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~~~~~htlNgt~~A~~R~l~ai 396 (430) T Consensus 412 ~~~~~~g~~~pd~p~~~~~~~~p~~~d~~~g~~~~~~~~~g~~~~~g--~~~~~~~~~~---~w~-gc~g~g~~~w~~g~ 485 (520) T TIGR00415 412 RKKEDRGIEFPDVPKYELRLWLPGREDERKGVAVTSANVHGTHFVEG--FRIKDYKGLN---VWT-GCTGYGLTRWVYGF 485 (520) T ss_pred CCCCCCCCCCCCCCCHHHEEECCCCCCCCCCEEEEECCCCCCEEECC--CEEHHCCCCE---EEC-CCCCCCHHHHHHHH T ss_conf 42000256577775201101057743111340455303344100012--1000003650---110-33322046787777 Q ss_pred HHHCCCCCC Q ss_conf 883468998 Q gi|254780680|r 397 LENYLNADG 405 (430) Q Consensus 397 lEn~q~~dg 405 (430) T Consensus 486 ~~~~g~~~~ 494 (520) T TIGR00415 486 LAQYGFEFG 494 (520) T ss_pred HHHHCCCCC T ss_conf 765056667 |
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa . The seryl-tRNA synthetases from a few of the archaea that belong to this group are different from the set of mutually more closely related seryl-tRNA synthetases from eubacteria, eukaryotes, and other archaea (IPR002317 from INTERPRO).; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm. |
>KOG4163 consensus | Back alignment and domain information |
---|
Probab=97.70 E-value=3.8e-05 Score=59.00 Aligned_cols=255 Identities=16% Similarity=0.200 Sum_probs=180.2 Q ss_pred CHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHH-HCHHHHHHHHH Q ss_conf 20221173100011222167530105648899999999999862232032021235620278898655-14224767764 Q gi|254780680|r 143 EIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTG-QIPKFADDMFC 221 (430) Q Consensus 143 elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG-~lp~f~~~~y~ 221 (430) T Consensus 74 qVitk~emieYyd---v--sGcyilRP~s~aIWe~Iq~wfd~-~ik~lGv~ncYFPmfVs~~~LEkEk~Hve~FaPEvAw 147 (551) T KOG4163 74 QVITKGEMIEYYD---V--SGCYILRPWSYAIWEAIQDWFDA-EIKKLGVKNCYFPMFVSKSVLEKEKDHVEGFAPEVAW 147 (551) T ss_pred HHHHHHHHHEEEC---C--CCEEEECCHHHHHHHHHHHHHHH-HHHHHCCCCCEEEEECCHHHHHHHHHHHCCCCCCEEE T ss_conf 9854341100233---5--41489553478999999999987-8887364340103324788876556554157853279 Q ss_pred --------HHHCCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEE-EEECCCC Q ss_conf --------3100023134541145445342059555042088532210788433554343212222102002-1212786 Q gi|254780680|r 222 --------TTDGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCE-LVSITRE 292 (430) Q Consensus 222 --------~~d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE-~~~~~~p 292 (430) T Consensus 148 VTr~G~seLeepiaiRPTSETvmyp~yakWi~ShRDLPlkLNQW~nVvRWEf----k~p~PFlRtrEFLWQEGHTAfat~ 223 (551) T KOG4163 148 VTRAGNSELEEPIAIRPTSETVMYPYYAKWIQSHRDLPLKLNQWCNVVRWEF----KHPQPFLRTREFLWQEGHTAFATP 223 (551) T ss_pred EEECCCCCCCCCEEECCCCCCEECHHHHHHHHHHCCCCHHHHHHHHHEEEEC----CCCCCCHHHHHHHHHCCCCHHCCH T ss_conf 9703884114642234675211038889988760467546654322235302----489751235577774573010797 Q ss_pred CCHHHHHHHHHHHHHHHHHHH-CCH---HHHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCCEE Q ss_conf 501457898999999999984-106---7530378011784434024101101004833237531021007645326847 Q gi|254780680|r 293 EDSFTEHERMLSCAEEILKRL-DLH---YRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRY 368 (430) Q Consensus 293 e~S~~~~e~~~~~~~~i~~~L-~lp---yRvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry 368 (430) T Consensus 224 ~eA~eEvlqiLdlYa~vy~ellAiPVvkGrKse---~EkFaGgd~TttvEa~i~~~GrgiQgaTSH~LGQNFSkmF~i~~ 300 (551) T KOG4163 224 EEAEEEVLQILDLYARVYEELLAIPVVKGRKSE---KEKFAGGDYTTTVEAFIPCSGRGIQGATSHHLGQNFSKMFEIVF 300 (551) T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH---HHHCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCEEE T ss_conf 677899999999999998762034301476345---33025775047776652466655554320256677998623441 Q ss_pred ECCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCEECCCC Q ss_conf 33899841010420043228999999998834689983865822 Q gi|254780680|r 369 RDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTV 412 (430) Q Consensus 369 ~~~~~~~~~~~htlNgt~~A~~R~l~ailEn~q~~dg~i~iP~~ 412 (430) T Consensus 301 ed~~~g~~~fv~Q-nSWg~-sTRtiGvmiM~HgDdkGLvLPPrV 342 (551) T KOG4163 301 EDPGEGEKEFVWQ-NSWGL-STRTIGVMIMTHGDDKGLVLPPRV 342 (551) T ss_pred CCCCCCCHHHEEE-CCCCC-CCCEEEEEEEEECCCCCCCCCCCC T ss_conf 5887411220331-25553-421134799983178653048752 |
|
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain | Back alignment and domain information |
---|
Probab=100.00 E-value=0 Score=506.43 Aligned_cols=219 Identities=26% Similarity=0.366 Sum_probs=208.6 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHH--------HCCEECCCCCCHHHHHHHH Q ss_conf 88999999999998622320320212356202788986551422476776431--------0002313454114544534 Q gi|254780680|r 171 LAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTT--------DGRWLIPTSEVSLTNLYSH 242 (430) Q Consensus 171 ~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~--------d~l~Li~TaEvpL~~~~~~ 242 (430) T Consensus 1 Ga~L~~aL~~~~~~~~-~~~G~~~v~~P~l~~~~~~~~sg~~~~f~~~~y~v~~~~~~~~~~~~~L~PTsE~~~~~~~~~ 79 (235) T cd00670 1 GTALWRALERFLDDRM-AEYGYQEILFPFLAPTVLFFKGGHLDGYRKEMYTFEDKGRELRDTDLVLRPAACEPIYQIFSG 79 (235) T ss_pred CHHHHHHHHHHHHHHH-HHCCCEEEECCCCCCHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCEEEEECCCHHHHHHHHC T ss_conf 9889999999999999-986998998985578999922386754520528982377666787389930786999999948 Q ss_pred HCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCC Q ss_conf 20595550420885322107884335543432122221020021212786501457898999999999984106753037 Q gi|254780680|r 243 EIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLHYRVVSL 322 (430) Q Consensus 243 ~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~lpyRvv~~ 322 (430) T Consensus 80 ~i~s~~dLPlr~~~~s~~fR~E~~~----~~Gl~Rv~eF~k~E~~~~~~~e~~~~~~~~~~~~~~~i~~~L~l~y~v~~~ 155 (235) T cd00670 80 EILSYRALPLRLDQIGPCFRHEPSG----RRGLMRVREFRQVEYVVFGEPEEAEEERREWLELAEEIARELGLPVRVVVA 155 (235) T ss_pred CCCCHHHCCEEEEEECCEECCCCCC----CCCCEEEEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC T ss_conf 3287687995454456533367899----999836789998507999688999999999999999999986997799975 Q ss_pred CCHHCCCHHH--------EEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCCEEECCCCCCCCEEEEECCCHHHHHHHHH Q ss_conf 8011784434--------02410110100483323753102100764532684733899841010420043228999999 Q gi|254780680|r 323 CTGDLGFSAC--------KTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLI 394 (430) Q Consensus 323 ~sgdlg~~a~--------~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~~~~~htlNgt~~A~~R~l~ 394 (430) T Consensus 156 ~~~d~g~~~~~~~~~~a~~~~d~E~~~p~~~~~~e~~s~S~~~~~q~r~~~~~~~~~~~---~~~ht~~~s~~a~~R~l~ 232 (235) T cd00670 156 DDPFFGRGGKRGLDAGRETVVEFELLLPLPGRAKETAVGSANVHLDHFGASFKIDEDGG---GRAHTGCGGAGGEERLVL 232 (235) T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCHHHCCCCCEEECCCC---CEEEEECCCCCHHHHHHH T ss_conf 86133766410002565556469999778994678999302578444302530146999---689997263288999999 Q ss_pred HHH Q ss_conf 998 Q gi|254780680|r 395 AIL 397 (430) Q Consensus 395 ail 397 (430) T Consensus 233 All 235 (235) T cd00670 233 ALL 235 (235) T ss_pred HHC T ss_conf 869 |
This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. |
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain | Back alignment and domain information |
---|
Probab=100.00 E-value=0 Score=391.43 Aligned_cols=205 Identities=25% Similarity=0.399 Sum_probs=187.2 Q ss_pred HHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHH-HCCEECCCCCCHHHHHHHHHCCCHHHHCCEE Q ss_conf 999999998622320320212356202788986551422476776431-0002313454114544534205955504208 Q gi|254780680|r 176 RALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTT-DGRWLIPTSEVSLTNLYSHEIIESKSLPLRF 254 (430) Q Consensus 176 ~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~-d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~ 254 (430) T Consensus 3 ~~ie~~~r~-~~~~~G~~ev~~P~l~~~~~~~~sg~~~~~~~~~~~~~~~~~~L~pt~e~~~~~~~~~~~---~dLP~r~ 78 (211) T cd00768 3 SKIEQKLRR-FMAELGFQEVETPIVEREPLLEKAGHEPKDLLPVGAENEEDLYLRPTLEPGLVRLFVSHI---RKLPLRL 78 (211) T ss_pred HHHHHHHHH-HHHHCCCEEEECCEECCHHHHHHCCCCHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHH---HHCCHHH T ss_conf 899999999-999869989999834279999750676222301104679769995168499999975247---6577786 Q ss_pred EEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCH--HHHCCCCCHHCCCH-H Q ss_conf 85322107884335543432122221020021212786501457898999999999984106--75303780117844-3 Q gi|254780680|r 255 TTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLH--YRVVSLCTGDLGFS-A 331 (430) Q Consensus 255 ~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~lp--yRvv~~~sgdlg~~-a 331 (430) T Consensus 79 ~~~~~~fR~E~~~-----~Gl~RvreF~~~e~~~f~~~~~~~~~~~~~~~~~~~i~~~lgl~~~~~~~~~~~~~~~~~~a 153 (211) T cd00768 79 AEIGPAFRNEGGR-----RGLRRVREFTQLEGEVFGEDGEEASEFEELIELTEELLRALGIKLDIVFVEKTPGEFSPGGA 153 (211) T ss_pred HEECCEECCCCCC-----CCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCC T ss_conf 4320056057888-----88446046889847999884888999999999999999974998886999977867666452 Q ss_pred HEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCCEEECCCCCCCCEEEEECCCHHHHHHH Q ss_conf 4024101101004833237531021007645326847338998410104200432289999 Q gi|254780680|r 332 CKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRC 392 (430) Q Consensus 332 ~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~~~~~htlNgt~~A~~R~ 392 (430) T Consensus 154 ~~~~Die~~~p-~~~~~Ev~s~~~~~d~qsr~~~i~y~~~dg~-~~~~~~~-~~gl~v~Rl 211 (211) T cd00768 154 GPGFEIEVDHP-EGRGLEIGSGGYRQDEQARAADLYFLDEALE-YRYPPTI-GFGLGLERL 211 (211) T ss_pred EEEEEEEEECC-CCCEEEEECEECCCCHHHHHCCCEEECCCCC-EEEEEEE-ECEECCCCC T ss_conf 35455789837-8979999354616778788469899999999-9875563-032413669 |
Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ. |
>PRK04173 glycyl-tRNA synthetase; Provisional | Back alignment and domain information |
---|
Probab=99.39 E-value=5.8e-12 Score=109.66 Aligned_cols=255 Identities=18% Similarity=0.272 Sum_probs=188.1 Q ss_pred HHHHCC--CCCEEECCHHHHHHHHHHHHHHHHHHHHC-CCCEEHHHHHCCHHHHHHHHHCHHHHHHHH---------HH- Q ss_conf 122216--75301056488999999999998622320-320212356202788986551422476776---------43- Q gi|254780680|r 156 ATKLSG--ARFSVLTGHLAHLERALGQFMIDLHTSEH-GYTEVSAPLLVRDEAMYGTGQIPKFADDMF---------CT- 222 (430) Q Consensus 156 a~kvsG--srF~~Lkg~~A~Le~ALi~y~ld~~~~~~-Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y---------~~- 222 (430) T Consensus 22 ssEIYGG~ag~~DyGPlG~~LK~Ni~~~W~~~fv~~~~~~~~id~~ii~~~~V~~ASGHv~~F~D~~v~c~~~~~r~RaD 101 (460) T PRK04173 22 SSEIYGGLAGFWDYGPLGVELKNNIKKAWWKSFVQERPDVVGIDSPIIMPPEVWKASGHVDNFSDPLVECKKCKKRYRAD 101 (460) T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHCCCCCCCCCCCEEECCCCCCEECHH T ss_conf 73003781236155853599999999999999865258778861444489878544677465676234757678363016 Q ss_pred ---HH-------------------------------CC------EE-----C-CCCCCHHHHHHHHH------------- Q ss_conf ---10-------------------------------00------23-----1-34541145445342------------- Q gi|254780680|r 223 ---TD-------------------------------GR------WL-----I-PTSEVSLTNLYSHE------------- 243 (430) Q Consensus 223 ---~d-------------------------------~l------~L-----i-~TaEvpL~~~~~~~------------- 243 (430) T Consensus 102 ~Lie~~~~~~~~~~~~~~l~~~i~~~~i~cP~cg~~~lt~~~~FNLMF~T~iG~~~~~~~~~YLRPETAQGiFvnFk~v~ 181 (460) T PRK04173 102 HLIEEYLGIDAEGLSNEELEELIEENNIKCPECGGENWTEVRQFNLMFKTFIGPVEDSSSLGYLRPETAQGIFVNFKNVL 181 (460) T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCEEECHHHHHHHHHHHHHHH T ss_conf 77666532012335899999999970887999999677544312055575135566777502316044104566119999 Q ss_pred CCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCH---HHHC Q ss_conf 0595550420885322107884335543432122221020021212786501457898999999999984106---7530 Q gi|254780680|r 244 IIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLH---YRVV 320 (430) Q Consensus 244 ~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~lp---yRvv 320 (430) T Consensus 182 ~~~r~KlPFgiaQIGKaFRNEIsPr----~~lfR~REFeQmEiE~F~~P~~~~e~~~yw~~~~~~fl~~lGi~~~~lR~r 257 (460) T PRK04173 182 RTARKKLPFGIAQIGKSFRNEITPR----NFIFRTREFEQMELEFFVKPGTDEEWFAYWIALRKNFLLDLGIDPENLRFR 257 (460) T ss_pred HHCCCCCCEEEEECCCCCCCCCCCC----CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHEEEE T ss_conf 9717788804310040012430655----451223455552433105867458999999999999999839988994786 Q ss_pred CCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHH------CCCEEECCCCCCCCEEEEECCCHHHHHHHHH Q ss_conf 3780117844340241011010048332375310210076453------2684733899841010420043228999999 Q gi|254780680|r 321 SLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRR------MNSRYRDPNSKSLKFTHTLNGSGVAVGRCLI 394 (430) Q Consensus 321 ~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrR------l~iry~~~~~~~~~~~htlNgt~~A~~R~l~ 394 (430) T Consensus 258 ~h~~~elAHYa~~~~D~E~~~~~--Gw~E~~Gia~RtdyDL~~H~~~Sg~~L~~~d~~~~~k~iPhVIE-pS~GvdR~~l 334 (460) T PRK04173 258 EHLPEELAHYSKATWDIEYKFPF--GWGELEGIANRTDYDLSRHSKHSGEDLSYFDQETGEKYIPYVIE-PSFGLDRLFL 334 (460) T ss_pred ECCCHHHCCCCHHHEEEEEECCC--CEEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCEECCEEEE-ECCCCCHHHH T ss_conf 30613420002200558994589--82887664064210278898744887179822558561340564-0467108999 Q ss_pred HHHHHCCCCC----C----CEECCCCCCCCC Q ss_conf 9988346899----8----386582223101 Q gi|254780680|r 395 AILENYLNAD----G----SVTIPTVLRPYM 417 (430) Q Consensus 395 ailEn~q~~d----g----~i~iP~~L~pym 417 (430) T Consensus 335 a~L~~ay~ee~~~~~e~R~vL~l~p~lAPik 365 (460) T PRK04173 335 AFLEDAYTEEELGDGDKRTVLRLPPALAPVK 365 (460) T ss_pred HHHHHHHHHHCCCCCCEEEEEECCCCCCCEE T ss_conf 9998765200047875058996266457716 |
|
>TIGR00409 proS_fam_II prolyl-tRNA synthetase; InterPro: IPR004500 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
---|
Probab=99.07 E-value=2.2e-10 Score=97.93 Aligned_cols=230 Identities=21% Similarity=0.253 Sum_probs=181.0 Q ss_pred HCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCC-CCEEHHHHHCC-HHHHHHHHHCHHHHH---HHHHHHH----CCEEC Q ss_conf 216753010564889999999999986223203-20212356202-788986551422476---7764310----00231 Q gi|254780680|r 159 LSGARFSVLTGHLAHLERALGQFMIDLHTSEHG-YTEVSAPLLVR-DEAMYGTGQIPKFAD---DMFCTTD----GRWLI 229 (430) Q Consensus 159 vsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~G-y~~v~~P~lv~-~~~~~gtG~lp~f~~---~~y~~~d----~l~Li 229 (430) T Consensus 35 ~~~SGlY~~LPL~~rVL~Kv~~ivree-M~~~GGA~E~~lp~~~~la~LW~~SGRW~~YG~seGELl~lkDR~~r~f~Lg 113 (620) T TIGR00409 35 RLGSGLYNWLPLGLRVLKKVENIVREE-MNKDGGAIEVLLPALQPLAELWQESGRWDTYGPSEGELLRLKDRKGREFVLG 113 (620) T ss_pred ECCCCHHHHHHHHHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCC T ss_conf 243414456578999999889999986-2267853346676677899987540753246865433667652688873567 Q ss_pred CCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCC-CHHHHHHHHHHHHHH Q ss_conf 3454114544534205955504208853221078843355434321222210200212127865-014578989999999 Q gi|254780680|r 230 PTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREE-DSFTEHERMLSCAEE 308 (430) Q Consensus 230 ~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe-~S~~~~e~~~~~~~~ 308 (430) T Consensus 114 pT~EEvIT~l~~~~i~SYKqLP~~lYQI~tKFRDEiRPRF----Gl~RgREFiMKDAYSFH~~~ESL~~ty~~m~~aY~~ 189 (620) T TIGR00409 114 PTHEEVITDLVRNEIKSYKQLPLNLYQIQTKFRDEIRPRF----GLLRGREFIMKDAYSFHSDEESLDATYQKMDQAYSN 189 (620) T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCC----CCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 8665568999999875453068301004512144204887----600012323024255447876799998899999999 Q ss_pred HHHHHCCHHH-HCCCCCHH-CCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCCEEE-------CCCCCCCCEE Q ss_conf 9998410675-30378011-7844340241011010048332375310210076453268473-------3899841010 Q gi|254780680|r 309 ILKRLDLHYR-VVSLCTGD-LGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYR-------DPNSKSLKFT 379 (430) Q Consensus 309 i~~~L~lpyR-vv~~~sgd-lg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry~-------~~~~~~~~~~ 379 (430) T Consensus 190 IF~rlGldFR~iV~ADSGdaIGG~~S~EF~vL~----~~GEDti~~~~h~~dyaAlNiE~A~~~~~~~P~~~~~~~~~~~ 265 (620) T TIGR00409 190 IFSRLGLDFRPIVQADSGDAIGGSASHEFMVLA----ESGEDTIVYSDHESDYAALNIELAEALKPGEPRNAPTAELKKV 265 (620) T ss_pred HHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHH----HCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCHHHCCCCC T ss_conf 998658982106871578757888625678866----4589617886257651232367776425788750113314454 Q ss_pred EEECCCHHHHHHHHHHHHHHCCCC Q ss_conf 420043228999999998834689 Q gi|254780680|r 380 HTLNGSGVAVGRCLIAILENYLNA 403 (430) Q Consensus 380 htlNgt~~A~~R~l~ailEn~q~~ 403 (430) T Consensus 266 ~tPN~~t------i~~~~~~f~~~ 283 (620) T TIGR00409 266 DTPNTKT------IAELVEFFNLP 283 (620) T ss_pred CCCCCHH------HHHHHHHHCCC T ss_conf 7744111------89999986788 |
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Prolyl-tRNA synthetase (6.1.1.15 from EC) exists in two forms, which are loosely related. The first form, is present in the majority of eubacteria species. The second one, present in some eubacteria, is essentially present in archaea and eukaryota. Prolyl-tRNA synthetase belongs to class IIa. This family includes the enzyme from Escherichia coli that contains all three of the conserved consensus motifs characteristic of class II aminoacyl-tRNA synthetases and the enzyme from the spirochete Borrelia burgdorferi.; GO: 0000166 nucleotide binding, 0004827 proline-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006433 prolyl-tRNA aminoacylation, 0005737 cytoplasm. |
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
---|
Probab=99.04 E-value=5.1e-09 Score=87.74 Aligned_cols=249 Identities=18% Similarity=0.306 Sum_probs=174.2 Q ss_pred CCCEEECCHHHHHHHHHHHHHHHHHHHH-CCCCEEHHHHHCCHHHHHHHHHCHHHHHHH---------HH----HHH--- Q ss_conf 7530105648899999999999862232-032021235620278898655142247677---------64----310--- Q gi|254780680|r 162 ARFSVLTGHLAHLERALGQFMIDLHTSE-HGYTEVSAPLLVRDEAMYGTGQIPKFADDM---------FC----TTD--- 224 (430) Q Consensus 162 srF~~Lkg~~A~Le~ALi~y~ld~~~~~-~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~---------y~----~~d--- 224 (430) T Consensus 30 ~GfyDYGPlG~~LK~nI~~~Wrk~fV~~~e~~~eIdtpii~p~~V~kASGHvd~FsDplv~c~~c~~~yRADHLiEe~l~ 109 (558) T COG0423 30 AGFYDYGPLGVELKNNIKEAWRKSFVTEREDVVEIDTPIILPEEVWKASGHVDKFSDPLVECKKCGERYRADHLIEEYLG 109 (558) T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHEECCCCEEEECCCCCCCHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHH T ss_conf 46532577518999999999999866246876784255448688864347613465620434624534533688898764 Q ss_pred -C-C-----------------------------------E--ECCCCCC------------HHHHHHHHHCCCHHHHCCE Q ss_conf -0-0-----------------------------------2--3134541------------1454453420595550420 Q gi|254780680|r 225 -G-R-----------------------------------W--LIPTSEV------------SLTNLYSHEIIESKSLPLR 253 (430) Q Consensus 225 -~-l-----------------------------------~--Li~TaEv------------pL~~~~~~~~l~~~~LPik 253 (430) T Consensus 110 ~~~~~~~~~~e~~~ii~~~~ir~p~~g~~l~~v~~FNLMF~T~IGp~~~~~~YLRPETAQGiFvnFk~l~~~~r~klPFg 189 (558) T COG0423 110 KDGHGNMSPEELTEIIREYDIRCPECGGELNEVREFNLMFKTTIGPVEDSLGYLRPETAQGIFVNFKNLLEFARNKLPFG 189 (558) T ss_pred HCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCEE T ss_conf 10345578788888888617758876886687503446667314577886324565100212153699999753689848 Q ss_pred EEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCC-------------------H--HH----------HHH-- Q ss_conf 88532210788433554343212222102002121278650-------------------1--45----------789-- Q gi|254780680|r 254 FTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREED-------------------S--FT----------EHE-- 300 (430) Q Consensus 254 ~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~-------------------S--~~----------~~e-- 300 (430) T Consensus 190 iaQIGKsfRNEISPr----~gl~R~REF~QaEiE~Fv~P~~k~~p~f~~v~~~~l~l~~~~~q~~~~~~EAv~~g~~~n~ 265 (558) T COG0423 190 IAQIGKSFRNEISPR----NGLFRTREFEQAEIEFFVDPEEKEHPKFNEVKDEKLPLLPREAQEEGTEEEAVEEGIVENE 265 (558) T ss_pred EEEECHHHCCCCCCC----CCEEEHHHHHHHEEEEEECCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCEECCH T ss_conf 886231014652766----5366512343120135887775568633333210024664777641003455441545044 Q ss_pred ---HHHHHHHHHHHHHCCH---HHHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCC-------- Q ss_conf ---8999999999984106---75303780117844340241011010048332375310210076453268-------- Q gi|254780680|r 301 ---RMLSCAEEILKRLDLH---YRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNS-------- 366 (430) Q Consensus 301 ---~~~~~~~~i~~~L~lp---yRvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~i-------- 366 (430) T Consensus 266 ~~~y~~~~~~~fl~~lGI~~e~lRfrqh~~~E~AHYa~~twD~E~~~~~~g-WiE~~GiAdRtdYDL~~H~k~s~~~l~v 344 (558) T COG0423 266 TLAYFIARTKFFLEDLGIDPEKLRFRQHLPEELAHYSKDTWDAEYKFPFGG-WIELVGIADRTDYDLSRHSKFSGEDLTV 344 (558) T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHCCEEEEEECCCCC-EEEEEEEECCCCCCHHHHHHHCCCCCEE T ss_conf 389999999999998099989806652390877665440232799637886-6999986135544556565403666223 Q ss_pred --EE-----------------ECCCC---------------------C-------------------CCCEEEEECCCHH Q ss_conf --47-----------------33899---------------------8-------------------4101042004322 Q gi|254780680|r 367 --RY-----------------RDPNS---------------------K-------------------SLKFTHTLNGSGV 387 (430) Q Consensus 367 --ry-----------------~~~~~---------------------~-------------------~~~~~htlNgt~~ 387 (430) T Consensus 345 ~~~~~ePk~v~~~~~~~~~~~~gp~~k~~a~~v~~~~se~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~iP~VIEP-Sf 423 (558) T COG0423 345 FREYDEPKEVERWHSKVDLKFLGPEFKKDAKKVAEALSELEELEKELNGYEVSKDLVIIEEVEKVTGEKYIPHVIEP-SF 423 (558) T ss_pred EECCCCCCEEEEEECCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHEEEEECCCCEECCCEECC-CC T ss_conf 32147762233100146621038144556677765445666665304762135310010011002475506715656-77 Q ss_pred HHHHHHHHHHH-HCCCCCC-----CEECCCCCCCC Q ss_conf 89999999988-3468998-----38658222310 Q gi|254780680|r 388 AVGRCLIAILE-NYLNADG-----SVTIPTVLRPY 416 (430) Q Consensus 388 A~~R~l~ailE-n~q~~dg-----~i~iP~~L~py 416 (430) T Consensus 424 GidRi~y~~l~~ay~~ee~~e~R~vLrl~p~lAPi 458 (558) T COG0423 424 GIDRIFYALLEHAYTEEEVEEKRIVLRLPPDLAPI 458 (558) T ss_pred CCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCE T ss_conf 71189999998762011356650599558655852 |
|
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
---|
Probab=98.26 E-value=8.7e-07 Score=71.19 Aligned_cols=189 Identities=21% Similarity=0.365 Sum_probs=121.1 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHH--HHHHHHHHHCCEECCCCCCHHHHHHH--HHCCC Q ss_conf 889999999999986223203202123562027889865514224--76776431000231345411454453--42059 Q gi|254780680|r 171 LAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKF--ADDMFCTTDGRWLIPTSEVSLTNLYS--HEIIE 246 (430) Q Consensus 171 ~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f--~~~~y~~~d~l~Li~TaEvpL~~~~~--~~~l~ 246 (430) T Consensus 209 lgkler~it~ffvd-----rgfleikspilip~eyiermgid~d~elskQiFrvd~n~CLRPMLAPnLYnylrkL~R~lp 283 (420) T PRK09537 209 LGKLERDITKFFVD-----RGFLEIKSPILIPAEYIERMGIDNDTELSKQIFRVDKNFCLRPMLAPNLYNYLRKLDRALP 283 (420) T ss_pred HHHHHHHHHHHHHC-----CCCEEECCCEECCHHHHHHHCCCCHHHHHHHHEEECCCCCCCCCCCHHHHHHHHHHHHHCC T ss_conf 76778888998541-----4513514850421999998578860565545167434533241014269999999986168 Q ss_pred HHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHH Q ss_conf 55504208853221078843355434321222210200212127865014578989999999999841067530378011 Q gi|254780680|r 247 SKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGD 326 (430) Q Consensus 247 ~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgd 326 (430) T Consensus 284 d---PIrIFEIGpCyRKES--dG~~-----HLeEFTMlNfcqmgsg----ctrenle~~i~efl~~lgIdfeiv~dscmV 349 (420) T PRK09537 284 D---PIKIFEIGPCYRKES--DGKE-----HLEEFTMVNFCQMGSG----CTRENLEALITEFLNHLGIDFEIVGDSCMV 349 (420) T ss_pred C---CEEEEEECCCCCCCC--CCHH-----HHHHHHHHHHHHHCCC----CCHHHHHHHHHHHHHHCCCEEEEECCCEEE T ss_conf 8---715886204303444--1067-----8877777768864489----867889999999998619727984252068 Q ss_pred CCCH-HHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCCEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCC Q ss_conf 7844-340241011010048332375310210076453268473389984101042004322899999999883468 Q gi|254780680|r 327 LGFS-ACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLN 402 (430) Q Consensus 327 lg~~-a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~~~~~htlNgt~~A~~R~l~ailEn~q~ 402 (430) T Consensus 350 YGdT~DvMhgDlE-----------LsSavvGP~pLDr~Wgi------------~kPWiGaGFGLERLLk-V~hg~~n 402 (420) T PRK09537 350 YGDTLDIMHGDLE-----------LSSAVVGPIPLDREWGI------------DKPWIGAGFGLERLLK-VMHGFKN 402 (420) T ss_pred ECCHHHHHCCCHH-----------HCCCCCCCCCCCCCCCC------------CCCCCCCCHHHHHHHH-HHHCCHH T ss_conf 5322565426401-----------10354477445655576------------6762023330999999-9835366 |
|
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
---|
Probab=97.99 E-value=0.00022 Score=53.36 Aligned_cols=186 Identities=19% Similarity=0.269 Sum_probs=116.5 Q ss_pred HHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHH-----HHHHHHHHHC--CEECCCCCCHHHHHHHHHCCCHHHH Q ss_conf 99999986223203202123562027889865514224-----7677643100--0231345411454453420595550 Q gi|254780680|r 178 LGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKF-----ADDMFCTTDG--RWLIPTSEVSLTNLYSHEIIESKSL 250 (430) Q Consensus 178 Li~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f-----~~~~y~~~d~--l~Li~TaEvpL~~~~~~~~l~~~~L 250 (430) T Consensus 116 ~~e~i~~iF-~~mGF~~~~gp~IE~d~~NFDaLn~P~dHPARdmqDTFy~~~~~~~~lLRTHTs~vq~R~l~~~~~~--- 191 (335) T COG0016 116 TIEEIEDIF-LGMGFTEVEGPEIETDFYNFDALNIPQDHPARDMQDTFYLKDDREKLLLRTHTSPVQARTLAENAKI--- 191 (335) T ss_pred HHHHHHHHH-HHCCCEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEECCCCCCEEECCCCCHHHHHHHHHCCCC--- T ss_conf 999999999-9749666458821320225243249999984124443787688773002366827659999847999--- Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHC-----CHHHHCCCCCH Q ss_conf 4208853221078843355434321222210200212127865014578989999999999841-----06753037801 Q gi|254780680|r 251 PLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLD-----LHYRVVSLCTG 325 (430) Q Consensus 251 Pik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~-----lpyRvv~~~sg 325 (430) T Consensus 192 P~k~~~~grvyR~D~~Da---TH----s~~FhQiEGlvvd~~~s----~~~Lkg~L~~f~~~~fg~~~~vRfrpsyFPFT 260 (335) T COG0016 192 PIKIFSPGRVYRNDTVDA---TH----SPEFHQIEGLVVDKNIS----FADLKGTLEEFAKKFFGEDVKVRFRPSYFPFT 260 (335) T ss_pred CCEEECCCCEECCCCCCC---CC----CHHEEEEEEEEEECCCC----HHHHHHHHHHHHHHHCCCCCCEEEECCCCCCC T ss_conf 915845663411788776---42----61013367899958956----99999999999999637776357606878989 Q ss_pred HCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCCEEECCCCCCCCEEEEECCCHHHHHHHH Q ss_conf 17844340241011010048332375310210076453268473389984101042004322899999 Q gi|254780680|r 326 DLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCL 393 (430) Q Consensus 326 dlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~~~~~htlNgt~~A~~R~l 393 (430) T Consensus 261 EP------S~Evdv~~~~~~~WlEi~G~Gmv~P~VL~~~G~---~~~~-~~GfAf-----GlGlERlA 313 (335) T COG0016 261 EP------SAEVDVYCPGCGGWLEILGCGMVHPNVLEAVGI---DPEE-YSGFAF-----GLGLERLA 313 (335) T ss_pred CC------EEEEEEEECCCCCEEEEECCCCCCHHHHHHCCC---CCCC-CEEEEE-----EECHHHHH T ss_conf 97------178999976878689983565457888974599---9876-058887-----40488999 |
|
>pfam01409 tRNA-synt_2d tRNA synthetases class II core domain (F) | Back alignment and domain information |
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Probab=97.37 E-value=0.0013 Score=47.52 Aligned_cols=188 Identities=19% Similarity=0.260 Sum_probs=111.5 Q ss_pred HHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHH-----HHHHHHHHH----CCEEC--CCCCCHHHHHHHHHCCCH Q ss_conf 9999986223203202123562027889865514224-----767764310----00231--345411454453420595 Q gi|254780680|r 179 GQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKF-----ADDMFCTTD----GRWLI--PTSEVSLTNLYSHEIIES 247 (430) Q Consensus 179 i~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f-----~~~~y~~~d----~l~Li--~TaEvpL~~~~~~~~l~~ 247 (430) T Consensus 23 ~~~i~~~f-~~~GF~~~~g~eves~~~NFDaLn~P~dHPaR~~~DTfy~~~~~~~~~~vLRtHTS~~q~r~l~-----~~ 96 (243) T pfam01409 23 LEEIRDIF-LSMGFEEVEGPEVESDFYNFDALNIPQDHPARDMQDTFYLKKPLKARRLLLRTHTTPVQARTLA-----EK 96 (243) T ss_pred HHHHHHHH-HHCCCEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCEEECCCCCHHHHHHHH-----HC T ss_conf 99999999-8779868769835642777775578988987676760343366667686576879889999997-----42 Q ss_pred HHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH-CCHHHHCCCCCHH Q ss_conf 550420885322107884335543432122221020021212786501457898999999999984-1067530378011 Q gi|254780680|r 248 KSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRL-DLHYRVVSLCTGD 326 (430) Q Consensus 248 ~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L-~lpyRvv~~~sgd 326 (430) T Consensus 97 ~~~p~r~~~~grvyR~d~~Da---tH----~~~FhQ~Eg~vvd~----~it~~~Lk~~l~~~~~~lfg~~~~~R~rp~-y 164 (243) T pfam01409 97 NKPPIKIFSIGRVFRRDQVDA---TH----LPEFHQVEGLVVDE----NVSFADLKGVLEEFLRKFFGFEVKVRFRPS-Y 164 (243) T ss_pred CCCCEEEECCCEEEECCCCCC---CC----CCEEEEEEEEEECC----CCCHHHHHHHHHHHHHHHCCCCCEEEECCC-C T ss_conf 799848981431332588984---31----53105755789657----778999999999999997399737986788-6 Q ss_pred CCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCCEEECCCCCCCCEEEEECCCHHHHHHHHHH Q ss_conf 784434024101101004833237531021007645326847338998410104200432289999999 Q gi|254780680|r 327 LGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIA 395 (430) Q Consensus 327 lg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~~~~~htlNgt~~A~~R~l~a 395 (430) T Consensus 165 FPFTe-PS~Evdv~~~~~~~WlEi~G~Gmv~p~vl~~~gid-----~~~~g~Af-----G~GlERlaMl 222 (243) T pfam01409 165 FPFTE-PSAEVDVYCCKGGGWIEIGGAGMVHPNVLEAVGID-----EDYPGFAF-----GLGVERLAML 222 (243) T ss_pred CCCCC-CCCEEEEEEECCCCEEEEEECCCCCHHHHHHCCCC-----CCCEEEEE-----EECHHHHHHH T ss_conf 99999-86179999964997258750366678899866989-----89769998-----5348899999 |
Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only phenylalanyl-tRNA synthetases. This is the core catalytic domain. |
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated | Back alignment and domain information |
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Probab=97.27 E-value=0.027 Score=37.75 Aligned_cols=185 Identities=18% Similarity=0.275 Sum_probs=113.8 Q ss_pred HHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHH-----HHHHHHHHHCCE-ECCCCCCHHHHHHHHHCCCHHHHCC Q ss_conf 9999986223203202123562027889865514224-----767764310002-3134541145445342059555042 Q gi|254780680|r 179 GQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKF-----ADDMFCTTDGRW-LIPTSEVSLTNLYSHEIIESKSLPL 252 (430) Q Consensus 179 i~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f-----~~~~y~~~d~l~-Li~TaEvpL~~~~~~~~l~~~~LPi 252 (430) T Consensus 113 ~~ei~~iF-~~~Gf~v~~GpeiE~~~~NFdaLn~P~~HPAR~~~DTFy~~~~~lLRTHTS~~qir~m~~------~~pp~ 185 (338) T PRK00488 113 IERIEDIF-VGLGFEVAEGPEIEDDYYNFEALNIPKDHPARDMQDTFYIDDRLLLRTHTSPVQIRTMEK------QKPPI 185 (338) T ss_pred HHHHHHHH-HHCCCEEECCCCEEEHHHHHHHHCCCCCCCCCCCCCEEEECCCCEECCCCCHHHHHHHHH------CCCCE T ss_conf 99999999-986976961883100454688756997885436466289768713435687888999972------69986 Q ss_pred EEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH-----CCHHHHCCCCCHHC Q ss_conf 0885322107884335543432122221020021212786501457898999999999984-----10675303780117 Q gi|254780680|r 253 RFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRL-----DLHYRVVSLCTGDL 327 (430) Q Consensus 253 k~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L-----~lpyRvv~~~sgdl 327 (430) T Consensus 186 ~~i~~GrvyR~d~~Da---tH----~~~FhQ~Egl~vd~-~it---~~~Lk~~l~~f~~~~fg~~~~~R~rpsyFPFtEP 254 (338) T PRK00488 186 RIIAPGRVYRNDSDDA---TH----SPMFHQVEGLVVDK-NIS---FADLKGTLEDFLKAFFGEDLKIRFRPSYFPFTEP 254 (338) T ss_pred EEEECCCCCCCCCCCC---CC----CEEEEEEEEEEEEC-CCC---HHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCC T ss_conf 9995266315899987---53----50466400589717-887---9999999999999972876647754788999998 Q ss_pred CCHHHEEEEEEEECCC--------CCCEEEEEEECCCCCHHHHHCCCEEECCCCCCCCEEEEECCCHHHHHHHHH Q ss_conf 8443402410110100--------483323753102100764532684733899841010420043228999999 Q gi|254780680|r 328 GFSACKTYDLEVWLAG--------QNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLI 394 (430) Q Consensus 328 g~~a~~~~DiE~w~P~--------~~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~~~~~htlNgt~~A~~R~l~ 394 (430) T Consensus 255 ----s~Evdi~~~~~~g~gc~~~~~~~WlEi~G~Gmv~p~Vl~~~gi---d~~~-~~G~Af-----G~GieR~aM 316 (338) T PRK00488 255 ----SAEVDVSCFNCKGKGCRVCKNTGWLEVLGCGMVHPNVLRNVGI---DPEE-YSGFAF-----GMGIERLAM 316 (338) T ss_pred ----CEEEEEEECCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHCCC---CCCC-CEEEEE-----EECHHHHHH T ss_conf ----5347887314577665447899638973766678899986699---9552-759987-----515889999 |
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>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain | Back alignment and domain information |
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Probab=97.23 E-value=0.002 Score=46.20 Aligned_cols=186 Identities=21% Similarity=0.260 Sum_probs=114.8 Q ss_pred HHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHH-----HHHHHHHHHC--CEE-CCCCCCHHHHHHHHHCCCHHH Q ss_conf 99999986223203202123562027889865514224-----7677643100--023-134541145445342059555 Q gi|254780680|r 178 LGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKF-----ADDMFCTTDG--RWL-IPTSEVSLTNLYSHEIIESKS 249 (430) Q Consensus 178 Li~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f-----~~~~y~~~d~--l~L-i~TaEvpL~~~~~~~~l~~~~ 249 (430) T Consensus 6 ~~~~i~~~f-~~~GF~~~~gp~ie~~~~NFD~Ln~P~dHPaR~~~DTfy~~~~~~~lLRtHTS~~q~r~l~~~------~ 78 (218) T cd00496 6 VIEEIEDIF-VSMGFTEVEGPEVETDFYNFDALNIPQDHPARDMQDTFYINDPARLLLRTHTSAVQARALAKL------K 78 (218) T ss_pred HHHHHHHHH-HHCCCEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCEEEECCCCCCEECCCCCHHHHHHHHHC------C T ss_conf 999999999-877986822895123103045338598875537243278637766021578756679999745------8 Q ss_pred HCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCC---HHHHCCCCCHH Q ss_conf 042088532210788433554343212222102002121278650145789899999999998410---67530378011 Q gi|254780680|r 250 LPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDL---HYRVVSLCTGD 326 (430) Q Consensus 250 LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~l---pyRvv~~~sgd 326 (430) T Consensus 79 ~p~~~~~~G~VyR~D~iDa---tH----~~~FhQ~Eg~~v~~----~~~~~~Lk~~l~~~~~~lfg~~~~~r~r--p~-y 144 (218) T cd00496 79 PPIRIFSIGRVYRNDEIDA---TH----LPEFHQIEGLVVDK----GLTFADLKGTLEEFAKELFGPITKVRFR--PS-Y 144 (218) T ss_pred CCCEEEECCCEEECCCCCC---CC----CCEEEEEEEEEEEC----CCCHHHHHHHHHHHHHHHCCCCCEEEEC--CC-C T ss_conf 9817994250465388984---31----53125763799956----5119999999999999973876645367--78-8 Q ss_pred CCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCCEEECCCCCCCCEEEEECCCHHHHHHHHHH Q ss_conf 784434024101101004833237531021007645326847338998410104200432289999999 Q gi|254780680|r 327 LGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIA 395 (430) Q Consensus 327 lg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~~~~~htlNgt~~A~~R~l~a 395 (430) T Consensus 145 FPFT-ePS~Evdv~~~~~~~WlEv~G~G~v~p~vL~~~G~---d--~~~~g~Af-----G~GlERlaMl 202 (218) T cd00496 145 FPFT-EPSFEVDVYCPGCLGWLEILGCGMVRPEVLENAGI---D--EEYSGFAF-----GIGLERLAML 202 (218) T ss_pred CCCC-CCCEEEEEEECCCCCCEEEECCCCCCHHHHHHCCC---C--CCCEEEEE-----EECHHHHHHH T ss_conf 9999-98269999965878714885046548899986697---9--99889998-----5258899999 |
PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. |
>PRK07080 hypothetical protein; Validated | Back alignment and domain information |
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Probab=97.11 E-value=0.014 Score=39.84 Aligned_cols=233 Identities=16% Similarity=0.179 Sum_probs=149.2 Q ss_pred CHHHHHHH---HHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHH-----HH------------HH----- Q ss_conf 64889999---9999999862232032021235620278898655142247677-----64------------31----- Q gi|254780680|r 169 GHLAHLER---ALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDM-----FC------------TT----- 223 (430) Q Consensus 169 g~~A~Le~---ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~-----y~------------~~----- 223 (430) T Consensus 42 gRs~~fE~vv~~l~a~i~~~g-~~~~~evlrFPPvm~r~~fE~s~YlkSFP~L~GtV~~f~G~e~~h~~ll~~~~~g~dW 120 (318) T PRK07080 42 GRSGLFERVVDALDALITRLG-ADQGAEVLRFPPAMSRAEFERSGYLKSFPQLAGTVHSFCGNEREHRRLLACLDRGEDW 120 (318) T ss_pred CCCHHHHHHHHHHHHHHHHHC-CCCCCCEEECCCCCCHHHHHHCCHHHHCCHHHCCEECCCCCCHHHHHHHHHHHCCCCC T ss_conf 361549999999999998736-4458715766998865553330465525002010010468968999999998718984 Q ss_pred ------HCCEECCCCCCHHHHHHHH-HCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHH Q ss_conf ------0002313454114544534-205955504208853221078843355434321222210200212127865014 Q gi|254780680|r 224 ------DGRWLIPTSEVSLTNLYSH-EIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSF 296 (430) Q Consensus 224 ------d~l~Li~TaEvpL~~~~~~-~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~ 296 (430) T Consensus 121 t~~~~ptdvvLtPAACyPvYP~~a~rG~LP~~--G~~~dv~~yCFRhEPS---~---dp~Rmq~FRMrEyV~iGt~e~v~ 192 (318) T PRK07080 121 TESQKPTDVVLTPAACYPVYPVVASRGPLPAG--GRIVDVFSYCFRHEPS---L---DPARMQLFRMREYVRIGTPEQIL 192 (318) T ss_pred CCCCCCCCEEECCCCCCCCCHHHCCCCCCCCC--CEEEEEEEEHHCCCCC---C---CHHHHHHHHCEEEEEECCHHHHH T ss_conf 22357664575040114253766027889888--7489876421017898---8---85888864404457717999999 Q ss_pred HHHHHHHHHHHHHHHHHCCHHHHCCCCC------HHCCCH----HHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCC Q ss_conf 5789899999999998410675303780------117844----340241011010048332375310210076453268 Q gi|254780680|r 297 TEHERMLSCAEEILKRLDLHYRVVSLCT------GDLGFS----ACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNS 366 (430) Q Consensus 297 ~~~e~~~~~~~~i~~~L~lpyRvv~~~s------gdlg~~----a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~i 366 (430) T Consensus 193 a~R~~W~~r~~~~~~~L~L~~~vd~AnDPFFGr~Gk~~a~~Qreq~LKfEllipi~~~~~ptAc~S~NyH~dhFG~~~~i 272 (318) T PRK07080 193 AFRQRWIERGTRMADALGLPVEIDVANDPFFGRGGKIVADSQREQNLKFELLIPIESDARPTACMSFNYHMDHFGLTWGI 272 (318) T ss_pred HHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCEEEEEECHHHHHCCCCCCC T ss_conf 99999999999999975998523115787546307777557776421347999736899971589621145550366674 Q ss_pred EEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCC Q ss_conf 4733899841010420043228999999998834689983865822231018 Q gi|254780680|r 367 RYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYMN 418 (430) Q Consensus 367 ry~~~~~~~~~~~htlNgt~~A~~R~l~ailEn~q~~dg~i~iP~~L~pym~ 418 (430) T Consensus 273 ~~a--dg---~~AHT~-CVgFGlERlalAL~~~HGlD~--~~WP~~VR~~L~ 316 (318) T PRK07080 273 RTA--DG---AVAHTG-CVGFGLERLALALFRHHGLDP--AAWPAAVRDVLW 316 (318) T ss_pred CCC--CC---CEEEHH-HHHCCHHHHHHHHHHHCCCCH--HHCCHHHHHHHC T ss_conf 047--88---710010-211159999999998719981--437788999855 |
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>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional | Back alignment and domain information |
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Probab=96.77 E-value=0.01 Score=40.94 Aligned_cols=188 Identities=19% Similarity=0.282 Sum_probs=111.9 Q ss_pred HHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHH-----HHHHHHHHHC------------------------- Q ss_conf 9999999986223203202123562027889865514224-----7677643100------------------------- Q gi|254780680|r 176 RALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKF-----ADDMFCTTDG------------------------- 225 (430) Q Consensus 176 ~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f-----~~~~y~~~d~------------------------- 225 (430) T Consensus 248 ~~~~~~~r~i~~-~mGF~e~~g~~ve~~fwNfdaLf~Pq~HPARd~~Dtf~l~~~~~~~lp~~~~~~Vk~~HE~Gg~~gS 326 (501) T PRK04172 248 REFIEEVRDILV-EMGFEEVKGPIVETEFWNFDALFQPQDHPAREMQDTFYLKYPSKGELPEELVERVKEVHEHGGDTGS 326 (501) T ss_pred HHHHHHHHHHHH-HCCCEEEECCCEECCCCCHHHHCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCC T ss_conf 999999999999-7897685366101000033430589899855544537865765455737889889998742776788 Q ss_pred -------------CEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCC Q ss_conf -------------0231345411454453420595550420885322107884335543432122221020021212786 Q gi|254780680|r 226 -------------RWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITRE 292 (430) Q Consensus 226 -------------l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~p 292 (430) T Consensus 327 ~Gw~y~w~~~~~~~~~lRthtt~~~~r~l---~~~~~~p~~~f~~~rvfR~e~~d~---tH----~~~F~Q~eg~v~~~- 395 (501) T PRK04172 327 RGWGYKWDEDIAKRLVLRTHTTALSARYL---AERPEPPGKYFSIGRVFRPETIDA---TH----LPEFYQLEGIVMGE- 395 (501) T ss_pred CCCCCCCCHHHHHHHCCCCCCCHHHHHHH---HHCCCCCEEEECCCCEEECCCCCC---CC----CCEEEEEEEEEECC- T ss_conf 77677778556643010436746679999---746899835735650542688886---54----41332224899848- Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCCEEECCC Q ss_conf 50145789899999999998410675303780117844340241011010048332375310210076453268473389 Q gi|254780680|r 293 EDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYRDPN 372 (430) Q Consensus 293 e~S~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry~~~~ 372 (430) T Consensus 396 ---~~~~~~L~g~l~~f~~~~g~~-~~rfrp~-yfPftE-Ps~E~~~~~~~~~-WiE~~g~G~~~pevl~~~g~~~---- 464 (501) T PRK04172 396 ---DVSFRHLLGILKEFYKRLGFE-EVKFRPA-YFPFTE-PSVEVEVYHPGLG-WVELGGAGIFRPEVTEPLGIDV---- 464 (501) T ss_pred ---CCCHHHHHHHHHHHHHHHCCC-CEEECCC-CCCCCC-CCEEEEEEECCCC-EEEEECCCCCCHHHHHHCCCCC---- T ss_conf ---887999999999999985886-0786799-899899-8278999957998-6998267578889997559998---- Q ss_pred CCCCCEEEEECCCHHHHHHHHH Q ss_conf 9841010420043228999999 Q gi|254780680|r 373 SKSLKFTHTLNGSGVAVGRCLI 394 (430) Q Consensus 373 ~~~~~~~htlNgt~~A~~R~l~ 394 (430) T Consensus 465 ---~~~a~-----G~g~eR~am 478 (501) T PRK04172 465 ---PVLAW-----GIGIDRLAM 478 (501) T ss_pred ---CEEEE-----EECHHHHHH T ss_conf ---74787-----515999999 |
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>PTZ00326 phenylalanyl-tRNA synthetase; Provisional | Back alignment and domain information |
---|
Probab=96.00 E-value=0.026 Score=37.96 Aligned_cols=201 Identities=18% Similarity=0.240 Sum_probs=113.3 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCC-----HHHHHHHHHCH-HHHHHHHHHHH-C--------------- Q ss_conf 56488999999999998622320320212356202-----78898655142-24767764310-0--------------- Q gi|254780680|r 168 TGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVR-----DEAMYGTGQIP-KFADDMFCTTD-G--------------- 225 (430) Q Consensus 168 kg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~-----~~~~~gtG~lp-~f~~~~y~~~d-~--------------- 225 (430) T Consensus 238 ~g~~hp~~-~~~~~~r~if~-~mGF~E~~~~~~ves~fwNfDaLf~Pq~HPARd~~DTF~l~~p~~~~~~~~~~~~~Vk~ 315 (505) T PTZ00326 238 MGNLHPLL-KVRQEFREIFM-EMGFEEMPTNRWVESSFWNFDALFIPQQHPARDLQDTFFLSKPETSKFLDAEYVERVKA 315 (505) T ss_pred CCCCCHHH-HHHHHHHHHHH-HCCCEECCCCCEEEECCCCCHHHCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHH T ss_conf 77668899-99999999999-77976766897133132131110489899866523347744754245687899998888 Q ss_pred ----------------------CEEC--CCCCCHHHHHHH--HHCCC-HHHHCCEEEEEECCCCCCCCCCCCCCCCEEEE Q ss_conf ----------------------0231--345411454453--42059-55504208853221078843355434321222 Q gi|254780680|r 226 ----------------------RWLI--PTSEVSLTNLYS--HEIIE-SKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQ 278 (430) Q Consensus 226 ----------------------l~Li--~TaEvpL~~~~~--~~~l~-~~~LPik~~~~s~cfR~EaGs~GkdtrGl~Rv 278 (430) T Consensus 316 vHe~G~~gs~Gw~y~W~~~~a~~~~LRthTt~vs~r~l~~~~~~~~~~~~~~P~k~fsi~rv~R~e~~d~---th----~ 388 (505) T PTZ00326 316 VHSGGGYGSIGWQYNWKLEEARKNVLRTHTTAVSARMLYKLAQQYQKGKGFKPKKYFSIDRVFRNETLDA---TH----L 388 (505) T ss_pred HHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEECCCEEECCCCCC---CC----C T ss_conf 8506887888767787977875206365775376999998754046556889814752372641577776---53----4 Q ss_pred EEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCC Q ss_conf 21020021212786501457898999999999984106753037801178443402410110100483323753102100 Q gi|254780680|r 279 HQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGN 358 (430) Q Consensus 279 HQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D 358 (430) T Consensus 389 ~~f~Q~eg~~~~~----~~~~~~l~~~l~~f~~~~g~~-~~rfrp~yf-pfteP-s~e~~~~~~~~~~w~Ei~g~Gm~~p 461 (505) T PTZ00326 389 AEFHQVEGVVIDR----NLSLGDLMGTLREFFRRIGIS-KLRFKPAFN-PYTEP-SMEIFGYHPQLKKWVEVGNSGLFRP 461 (505) T ss_pred CEEEEEEEEEECC----CCCHHHHHHHHHHHHHHHCCC-CEEECCCCC-CCCCC-CEEEEEEECCCCCEEEEECCCCCCH T ss_conf 0455435789648----888999999999999984987-578688888-98998-2789997078884799826657587 Q ss_pred HHHHHCCCEEECCCCCCCCEEEEECCCHHHHHHHHH Q ss_conf 764532684733899841010420043228999999 Q gi|254780680|r 359 FQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLI 394 (430) Q Consensus 359 ~QsrRl~iry~~~~~~~~~~~htlNgt~~A~~R~l~ 394 (430) T Consensus 462 ~vl~~~g~---~~~--~~~~a~-----G~g~eR~am 487 (505) T PTZ00326 462 EMLRPMGF---PED--VTVIAW-----GLSLERPTM 487 (505) T ss_pred HHHHHCCC---CCC--CEEEEE-----EECHHHHHH T ss_conf 88732595---999--848998-----623889999 |
|
>pfam00587 tRNA-synt_2b tRNA synthetase class II core domain (G, H, P, S and T) | Back alignment and domain information |
---|
Probab=100.00 E-value=9.6e-38 Score=301.20 Aligned_cols=166 Identities=40% Similarity=0.618 Sum_probs=158.8 Q ss_pred HHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHH----HCCEECCCCCCHHHHHHHHHCCCHHH Q ss_conf 99999999998622320320212356202788986551422476776431----00023134541145445342059555 Q gi|254780680|r 174 LERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTT----DGRWLIPTSEVSLTNLYSHEIIESKS 249 (430) Q Consensus 174 Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~----d~l~Li~TaEvpL~~~~~~~~l~~~~ 249 (430) T Consensus 1 l~~~l~~~~~~~~-~~~G~~~i~tP~l~~~~~~~~sg~~~~~~~~my~~~d~~~~~l~Lrp~~~~~~~~~~~~~~~~~~~ 79 (170) T pfam00587 1 LRNALENFIRDLF-KRYGYQEVDTPILEPKELWEGSGHWDDYFDEMYRFKDRGGEELYLRPTAEVGITRLFKNEILSYRD 79 (170) T ss_pred CHHHHHHHHHHHH-HHCCCEEEECCEEEEHHHHHHCCCCCCCHHHEEEEECCCCCEEEEECCCCHHHHHHHHHHCCCCCC T ss_conf 9799999999999-985998999991756789834477655753125673589976887325745888998862003235 Q ss_pred HCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCC Q ss_conf 04208853221078843355434321222210200212127865014578989999999999841067530378011784 Q gi|254780680|r 250 LPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGF 329 (430) Q Consensus 250 LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~ 329 (430) T Consensus 80 lP~r~~~~~~~fR~E~~----~~~Gl~R~reF~q~d~~~~~~~e~s~~~~~e~~~~~~~~~~~lgl~~~i~~~~~g~l~~ 155 (170) T pfam00587 80 LPLKLYQIGPCFRYEAR----PRRGLGRVREFTQVDAEIFGTPEQSEEEDEELLKLAEEILQDLGLPYRVVLNTRGDLGG 155 (170) T ss_pred CCCEEECCCCCCCCCCC----CCCCCCEEEEEEEECEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC T ss_conf 86013306530067777----66677436788980479996700429999999999999999879967999726777898 Q ss_pred HHHEEEEEEEECCCC Q ss_conf 434024101101004 Q gi|254780680|r 330 SACKTYDLEVWLAGQ 344 (430) Q Consensus 330 ~a~~~~DiE~w~P~~ 344 (430) T Consensus 156 ~~~~~~d~E~w~~~~ 170 (170) T pfam00587 156 YASKTGDLEAWLPAE 170 (170) T ss_pred HHHHCCCCCEECCCC T ss_conf 678607852057889 |
Other tRNA synthetase sub-families are too dissimilar to be included. This domain is the core catalytic domain of tRNA synthetases and includes glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. |
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed | Back alignment and domain information |
---|
Probab=98.66 E-value=1.4e-07 Score=77.05 Aligned_cols=155 Identities=17% Similarity=0.246 Sum_probs=109.0 Q ss_pred CCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHH-HHHCH-HHHHHHHHHH----HCCEECCCCCCHH Q ss_conf 5301056488999999999998622320320212356202788986-55142-2476776431----0002313454114 Q gi|254780680|r 163 RFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYG-TGQIP-KFADDMFCTT----DGRWLIPTSEVSL 236 (430) Q Consensus 163 rF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~g-tG~lp-~f~~~~y~~~----d~l~Li~TaEvpL 236 (430) T Consensus 9 G~rD~lP~~~~~~~~i~~~i~~~-~~~~Gy~~I~tP~lE~~d~~~~~~g~~~d~~~k~~y~f~D~~g~~l~LRpD~T~~i 87 (417) T PRK00037 9 GTRDILPEESAKWQYVEDTIREV-FERYGFSEIRTPIFEYTELFKRKIGESTDIVEKEMYTFQDKGGRSLTLRPEGTAPV 87 (417) T ss_pred CCCCCCHHHHHHHHHHHHHHHHH-HHHCCCEEEECCCCCHHHHHCCCCCCCCCHHHHHEEEEECCCCCEEEECCCCCHHH T ss_conf 87767988999999999999999-99859958577521509886245776322013320567759998898567767299 Q ss_pred HHHHHHHC-CCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCC-CHHHHHHHHHHHHHHHHHHHC Q ss_conf 54453420-5955504208853221078843355434321222210200212127865-014578989999999999841 Q gi|254780680|r 237 TNLYSHEI-IESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREE-DSFTEHERMLSCAEEILKRLD 314 (430) Q Consensus 237 ~~~~~~~~-l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe-~S~~~~e~~~~~~~~i~~~L~ 314 (430) T Consensus 88 aR~~~~~~~~~~~~~P~r~~y~g~vfR~e~p~-----~G--R~REf~Q~g~eiiG~~~~~aD---aEvi~l~~~~l~~lG 157 (417) T PRK00037 88 VRAVIENKLYNELPKPFKLYYIGPMFRYERPQ-----KG--RYRQFHQFGVEVIGSDSPAAD---AEVIALAADLLKALG 157 (417) T ss_pred HHHHHHHHHHCCCCCCEEEEEECCEEECCCCC-----CC--CCCCEEECCHHHHCCCCHHHH---HHHHHHHHHHHHHCC T ss_conf 99999721010688765899872466047898-----87--635245635277466417888---999999999999839 Q ss_pred CHHHHCCCCCHHCCCH Q ss_conf 0675303780117844 Q gi|254780680|r 315 LHYRVVSLCTGDLGFS 330 (430) Q Consensus 315 lpyRvv~~~sgdlg~~ 330 (430) T Consensus 158 l~~~~i~i--~~~g~~ 171 (417) T PRK00037 158 LKGLVLLL--NSLGDF 171 (417) T ss_pred CCCCCCCC--CCCCCH T ss_conf 96520010--567768 |
|
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain | Back alignment and domain information |
---|
Probab=98.42 E-value=6.2e-07 Score=72.28 Aligned_cols=190 Identities=17% Similarity=0.203 Sum_probs=145.3 Q ss_pred CCCEEECCHHHHHHHHHHHHHHHHHHHHC-CCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHHHCCEECC-CCCCHHHHH Q ss_conf 75301056488999999999998622320-3202123562027889865514224767764310002313-454114544 Q gi|254780680|r 162 ARFSVLTGHLAHLERALGQFMIDLHTSEH-GYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGRWLIP-TSEVSLTNL 239 (430) Q Consensus 162 srF~~Lkg~~A~Le~ALi~y~ld~~~~~~-Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~d~l~Li~-TaEvpL~~~ 239 (430) T Consensus 22 ag~yDyGPlG~~LK~Ni~~~W~~~fv~~~~~~~~id~~ii~p~-LmF~T~iG~~~~-----~~~~~yLRPETAQGifvnF 95 (254) T cd00774 22 AGFYDYGPLGVELKNNIKSAWRKSFVLEEEDMLEIDSPIITPE-LMFKTSIGPVES-----GGNLGYLRPETAQGIFVNF 95 (254) T ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCC-CCEECCCCCCCC-----CCCCEEECHHHHHHHHHHH T ss_conf 1061548237999999999999998743798799541003663-220012156558-----9860353634534779878 Q ss_pred HHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCC---H Q ss_conf 5342059555042088532210788433554343212222102002121278650145789899999999998410---6 Q gi|254780680|r 240 YSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDL---H 316 (430) Q Consensus 240 ~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~l---p 316 (430) T Consensus 96 k~~~~~~r~kLPFGiaQIGk~FRNEIsPr----~~l~R~REF~q~EiE~F~~P~~~~~~~~~w~~~~l~~~~~~~~~~~~ 171 (254) T cd00774 96 KNLLEFNRRKLPFGVAQIGKSFRNEISPR----NGLFRVREFTQAEIEFFVDPEKSHPWFDYWADQRLKWLPKFAQSPEN 171 (254) T ss_pred HHHHHHCCCCCCEEEEEEEECCCCCCCCC----CCCCCHHCHHHHEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 99999648888844565420226734777----67540000021257888579864257899999998663873899665 Q ss_pred HHHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHH Q ss_conf 75303780117844340241011010048332375310210076453 Q gi|254780680|r 317 YRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRR 363 (430) Q Consensus 317 yRvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrR 363 (430) T Consensus 172 ~~~~~~~a~e~~~~~~~~~~~~~~~~--~g~~e~~Gi~~~~~r~~~~ 216 (254) T cd00774 172 LRLTDHEKEELAHYANETLDYFYAFP--HGFLELEGIANRGDRFLQH 216 (254) T ss_pred EEEECCCHHHHCEECCCCEEEEEEHH--HHHHHHHCCCCCCCHHHHC T ss_conf 36730463674333222178786334--4167861828672578762 |
GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly |
>TIGR02367 PylS pyrrolysyl-tRNA synthetase; InterPro: IPR012739 PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine | Back alignment and domain information |
---|
Probab=98.40 E-value=5.4e-07 Score=72.70 Aligned_cols=135 Identities=23% Similarity=0.438 Sum_probs=109.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHH--HHHHHHHHHCCEECCCCCCHHHHHHH--HHCC Q ss_conf 4889999999999986223203202123562027889865514224--76776431000231345411454453--4205 Q gi|254780680|r 170 HLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKF--ADDMFCTTDGRWLIPTSEVSLTNLYS--HEII 245 (430) Q Consensus 170 ~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f--~~~~y~~~d~l~Li~TaEvpL~~~~~--~~~l 245 (430) T Consensus 241 ylGkler~it~ffvd-----rGfleiksPiliP~ey~ermGi~ndtelskqifrvdkn~ClrPmlaP~lynylrkldr~l 315 (453) T TIGR02367 241 YLGKLEREITKFFVD-----RGFLEIKSPILIPLEYVERMGIDNDTELSKQIFRVDKNLCLRPMLAPTLYNYLRKLDRIL 315 (453) T ss_pred HHHHHHHHHHHHHHH-----CCEEEECCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC T ss_conf 754676667666531-----240232363101056886507764025666666441001012100056899999987537 Q ss_pred CHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHCCCC Q ss_conf 955504208853221078843355434321222210200212127865014578989999999999841067530378 Q gi|254780680|r 246 ESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLHYRVVSLC 323 (430) Q Consensus 246 ~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~lpyRvv~~~ 323 (430) T Consensus 316 P~---Pik~fe~GPCyrke--sdGke-----hleeft---m~nfCqmG-sGCtrenle~~i~~fl~~l~idf~ivGds 379 (453) T TIGR02367 316 PD---PIKVFEVGPCYRKE--SDGKE-----HLEEFT---MLNFCQMG-SGCTRENLEALIKEFLDYLEIDFKIVGDS 379 (453) T ss_pred CC---CEEEEEECCCCCCC--CCCHH-----HHHHHH---HHHHHHCC-CCCCHHHHHHHHHHHHHHHCCCEEEECCE T ss_conf 89---64798606752435--65335-----666666---55543147-87326779999999887615424785242 |
Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, e.g. trimethylamine methyltransferase. . |
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
---|
Probab=97.85 E-value=0.0001 Score=55.76 Aligned_cols=146 Identities=19% Similarity=0.312 Sum_probs=104.6 Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHH-HHHHCHH-HHHHHHHHHH----CCEECCCCCCHHHHHHHH Q ss_conf 648899999999999862232032021235620278898-6551422-4767764310----002313454114544534 Q gi|254780680|r 169 GHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMY-GTGQIPK-FADDMFCTTD----GRWLIPTSEVSLTNLYSH 242 (430) Q Consensus 169 g~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~-gtG~lp~-f~~~~y~~~d----~l~Li~TaEvpL~~~~~~ 242 (430) T Consensus 15 p~d~~~~~~i~~~~~~v-~~~yGf~eI~TPifE~telf~r~~Ge~td~v~kemY~F~Dkggr~laLRpe~Tapv~R~~~e 93 (429) T COG0124 15 PEDMALREYIESTIRKV-FESYGFSEIRTPIFEYTELFARKSGEETDVVEKEMYTFKDKGGRSLALRPELTAPVARAVAE 93 (429) T ss_pred HHHHHHHHHHHHHHHHH-HHHCCCEECCCCCCCCHHHHHHCCCCCCCCCCCCEEEEEECCCCEEEECCCCCHHHHHHHHH T ss_conf 67789999999999999-99809976557551116676201697433332102899948998898446674999999995 Q ss_pred HCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEE-EEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCH-HHHC Q ss_conf 205955504208853221078843355434321222-21020021212786501457898999999999984106-7530 Q gi|254780680|r 243 EIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQ-HQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLH-YRVV 320 (430) Q Consensus 243 ~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~Rv-HQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~lp-yRvv 320 (430) T Consensus 94 n~~~~~-~p~k~yy~g~vfRyErPQ-----~GR~RqF~Q~g-~E~iG~~~~~~----DAEvi~l~~~~l~~lGi~~~~l~ 162 (429) T COG0124 94 NKLDLP-KPLKLYYFGPVFRYERPQ-----KGRYRQFYQFG-VEVIGSDSPDA----DAEVIALAVEILEALGIGGFTLE 162 (429) T ss_pred CCCCCC-CCEEEEEECCEECCCCCC-----CCCCEEEEECC-EEEECCCCCCC----CHHHHHHHHHHHHHCCCCCEEEE T ss_conf 622036-872599833562378888-----88750368767-67767998653----89999999999997499867999 Q ss_pred CCCCHH Q ss_conf 378011 Q gi|254780680|r 321 SLCTGD 326 (430) Q Consensus 321 ~~~sgd 326 (430) T Consensus 163 iN~~g~ 168 (429) T COG0124 163 INSRGI 168 (429) T ss_pred ECCCCC T ss_conf 817644 |
|
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase; InterPro: IPR002315 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
---|
Probab=97.78 E-value=1e-04 Score=55.88 Aligned_cols=196 Identities=17% Similarity=0.270 Sum_probs=137.6 Q ss_pred CCCEEECCHHHHHHHHHHHHHHHHHHHHCC-CCEEHHHHHCCHHHHHHHHHCHHHHHHH---------HHHH-------- Q ss_conf 753010564889999999999986223203-2021235620278898655142247677---------6431-------- Q gi|254780680|r 162 ARFSVLTGHLAHLERALGQFMIDLHTSEHG-YTEVSAPLLVRDEAMYGTGQIPKFADDM---------FCTT-------- 223 (430) Q Consensus 162 srF~~Lkg~~A~Le~ALi~y~ld~~~~~~G-y~~v~~P~lv~~~~~~gtG~lp~f~~~~---------y~~~-------- 223 (430) T Consensus 27 aG~~DyGPLG~~Lk~~I~~~wr~~fi~~e~d~~~id~P~i~~~evlKASGHvd~F~D~~v~Ck~C~~~fRADHl~e~~~~ 106 (606) T TIGR00389 27 AGFWDYGPLGAVLKNNIKNAWRKFFIINERDVLEIDSPIITPEEVLKASGHVDNFTDPMVDCKKCKERFRADHLIEEKLG 106 (606) T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCEECHHHHHHHHHH T ss_conf 20010157247899999998887511103653464245337257997528645673122673788804010123256651 Q ss_pred ---HC-------------------------------------------------C-----------EECCCCC-CHHHHH Q ss_conf ---00-------------------------------------------------0-----------2313454-114544 Q gi|254780680|r 224 ---DG-------------------------------------------------R-----------WLIPTSE-VSLTNL 239 (430) Q Consensus 224 ---d~-------------------------------------------------l-----------~Li~TaE-vpL~~~ 239 (430) T Consensus 107 ~~~~~dqqiK~V~~~D~K~~E~iL~~iDG~~~~eL~E~m~~~~i~CP~C~g~~nl~~v~~FNLMF~T~IG~~~~~~~~gY 186 (606) T TIGR00389 107 KDVEGDQQIKDVKLDDVKEYEKILAKIDGETGPELKEVMEKYDINCPNCGGENNLTEVRSFNLMFQTEIGVVGDSKRKGY 186 (606) T ss_pred HHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHCCCCCEEEECCCCCCCCEEE T ss_conf 00047610012685457779989755078711567877634278898223545613501204541102113347762241 Q ss_pred HHHH-----------CC--CHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCC-CCHHHHHHHHHHH Q ss_conf 5342-----------05--95550420885322107884335543432122221020021212786-5014578989999 Q gi|254780680|r 240 YSHE-----------II--ESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITRE-EDSFTEHERMLSC 305 (430) Q Consensus 240 ~~~~-----------~l--~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~p-e~S~~~~e~~~~~ 305 (430) T Consensus 187 LRPETAQG~FinFk~LL~~~r~klPFgvAQiGKSfRNEIsPr----~gl~R~REF~QaE~E~FV~P~~k~h~~F~~~~~~ 262 (606) T TIGR00389 187 LRPETAQGIFINFKRLLQFFRNKLPFGVAQIGKSFRNEISPR----QGLIRLREFEQAEIEFFVDPEDKSHPKFEEVKQE 262 (606) T ss_pred CCCHHCCCCCHHHHHHHHHHCCCCCEEEEEECCEEECCCCCC----CCEEEECHHHHHHHHHCCCCCCCCCCCHHHHHHC T ss_conf 476010475121689999745899648997441360400389----8757103154466874259600167200145405 Q ss_pred H---------------------------------------------HHHHHHHC-CH---HHHCCCCCHHCCCHHHEEEE Q ss_conf 9---------------------------------------------99999841-06---75303780117844340241 Q gi|254780680|r 306 A---------------------------------------------EEILKRLD-LH---YRVVSLCTGDLGFSACKTYD 336 (430) Q Consensus 306 ~---------------------------------------------~~i~~~L~-lp---yRvv~~~sgdlg~~a~~~~D 336 (430) T Consensus 263 ~~~Llp~~R~~~E~g~~~~~v~~t~gEAVe~G~i~ne~L~YFia~~~~FL~~igkI~~dklRFrqH~~~E~AHYA~dcwD 342 (606) T TIGR00389 263 VVPLLPAERQMQESGESEKPVKMTIGEAVEKGIIENETLAYFIALVKRFLLEIGKINPDKLRFRQHLKNEMAHYAKDCWD 342 (606) T ss_pred CCCCCCCCCCCHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHEE T ss_conf 00136764540001576405444178886346521006899999999999865278878852331360045565553623 Q ss_pred EEEECCCCCCEEEEEEECCCCCHHHH Q ss_conf 01101004833237531021007645 Q gi|254780680|r 337 LEVWLAGQNLYREISSCSTCGNFQSR 362 (430) Q Consensus 337 iE~w~P~~~~y~Ev~S~Snc~D~Qsr 362 (430) T Consensus 343 ~E~~t~~y-GwiE~~GiADR~~yDL~ 367 (606) T TIGR00389 343 AEILTSRY-GWIEVVGIADRTDYDLT 367 (606) T ss_pred EEEECCCC-CCEEEEEEECCCCCCHH T ss_conf 55665798-73899874067722168 |
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . In eubacteria, glycyl-tRNA synthetase (6.1.1.14 from EC) is an alpha2/beta2 tetramer composed of 2 different subunits , , . In some eubacteria, in archaea and eukaryota, glycyl-tRNA synthetase is an alpha2 dimer, this family. It belongs to class IIc and is one of the most complex synthetases. What is most interesting is the lack of similarity between the two types: divergence at the sequence level is so great that it is impossible to infer descent from common genes. The alpha (see IPR002310 from INTERPRO) and beta subunits (see IPR002311 from INTERPRO) also lack significant sequence similarity. However, they are translated from a single mRNA , and a single chain glycyl-tRNA synthetase from Chlamydia trachomatis has been found to have significant similarity with both domains, suggesting divergence from a single polypeptide chain . The sequence and crystal structure of the homodimeric glycyl-tRNA synthetase from Thermus thermophilus, shows that each monomer consists of an active site strongly resembling that of the aspartyl and seryl enzymes, a C-terminal anticodon recognition domain of 100 residues and a third domain unusually inserted between motifs 1 and 2 almost certainly interacting with the acceptor arm of tRNA(Gly). The C-terminal domain has a novel five-stranded parallel-antiparallel beta-sheet structure with three surrounding helices. The active site residues most probably responsible for substrate recognition, in particular in the Gly binding pocket, can be identified by inference from aspartyl-tRNA synthetase due to the conserved nature of the class II active site , .; GO: 0000166 nucleotide binding, 0004820 glycine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006426 glycyl-tRNA aminoacylation, 0005737 cytoplasm. |
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
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Probab=97.50 E-value=0.00035 Score=51.85 Aligned_cols=136 Identities=15% Similarity=0.288 Sum_probs=96.1 Q ss_pred EECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHHH----CCEECCCCCCHHHHHHH Q ss_conf 10564889999999999986223203202123562027889865514224767764310----00231345411454453 Q gi|254780680|r 166 VLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTD----GRWLIPTSEVSLTNLYS 241 (430) Q Consensus 166 ~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~d----~l~Li~TaEvpL~~~~~ 241 (430) T Consensus 13 D~~p~~~~~~~~Ie~~~~~~-f~~~Gy~eI~TP~~E~~e~~---~--~~~~kemy~f~D~~gr~l~LRPd~Ta~iaR~v~ 86 (281) T PRK12293 13 LYFGKSAKLKRDIENVASEI-LYKEGFEEIVTPSFSYHQHL---S--VADEKELLRFSDEKNHEISLRADSTVDVVRIIT 86 (281) T ss_pred CCCHHHHHHHHHHHHHHHHH-HHHCCCEEEECCCEEEEECC---C--CCCCCEEEEEECCCCCEEEECCCCCHHHHHHHH T ss_conf 66819999999999999999-99859948537856864434---6--656301799987999879977888789999999 Q ss_pred HHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHCC Q ss_conf 42059555042088532210788433554343212222102002121278650145789899999999998410675303 Q gi|254780680|r 242 HEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLHYRVVS 321 (430) Q Consensus 242 ~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~lpyRvv~ 321 (430) T Consensus 87 ~~l-~~~~~p~rl~Y~g~vFRye~-------r---Ef~Q~G-vEliG~~s~-------~Evi~la~~~l~~lgl~~~-l~ 146 (281) T PRK12293 87 KRL-GRSTEHKKWFYIQPVFRYPT-------T---EIYQIG-AEIIGESDL-------SKVLNIAAEIFNELEIEPV-LQ 146 (281) T ss_pred HCC-CCCCCCEEEEEECCEEECCC-------C---CCEEEC-EEEECCCCH-------HHHHHHHHHHHHHCCCCCE-EE T ss_conf 655-44689757998756353467-------7---746847-488779999-------9999999999997699624-99 Q ss_pred CCCHHCCC Q ss_conf 78011784 Q gi|254780680|r 322 LCTGDLGF 329 (430) Q Consensus 322 ~~sgdlg~ 329 (430) T Consensus 147 i--~~~~~ 152 (281) T PRK12293 147 I--SNIKI 152 (281) T ss_pred E--CCCCC T ss_conf 8--56562 |
|
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
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Probab=97.39 E-value=0.00074 Score=49.40 Aligned_cols=125 Identities=20% Similarity=0.265 Sum_probs=88.4 Q ss_pred HHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHH-HHHHCHHHHHHHHHHHH----CCEECCCCCCHHHHHHHHHCCCHHHH Q ss_conf 99999999862232032021235620278898-65514224767764310----00231345411454453420595550 Q gi|254780680|r 176 RALGQFMIDLHTSEHGYTEVSAPLLVRDEAMY-GTGQIPKFADDMFCTTD----GRWLIPTSEVSLTNLYSHEIIESKSL 250 (430) Q Consensus 176 ~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~-gtG~lp~f~~~~y~~~d----~l~Li~TaEvpL~~~~~~~~l~~~~L 250 (430) T Consensus 8 ~~~~~~i~~~-f~~~Gy~~I~tP~lE~~d~~~~~~Ge--~~~~~~y~f~D~~g~~l~LRpDlT~piaR~~~~~~---~~~ 81 (373) T PRK12295 8 AALAEALLAS-FEAAGAVRVDPPILQPAEPFLDLSGE--DIRRRIFVTSDENGEELCLRPDFTIPVCRRHLASN---AGE 81 (373) T ss_pred HHHHHHHHHH-HHHCCCEEECCCCCCCHHHHCCCCCC--HHHEEEEEEECCCCCEEEEECCCCHHHHHHHHHHC---CCC T ss_conf 9999999999-99869968568760417764143563--31100488998998989981788899999999838---999 Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEE--EEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCH-HHH Q ss_conf 420885322107884335543432122221020--021212786501457898999999999984106-753 Q gi|254780680|r 251 PLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWK--CELVSITREEDSFTEHERMLSCAEEILKRLDLH-YRV 319 (430) Q Consensus 251 Pik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~K--VE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~lp-yRv 319 (430) T Consensus 82 p~R~~Y~G~VfR~q~g--------r~r--Ef~Q~GvEiiG~~~~~~aDa---Evi~la~~~l~~lgl~~~~i 140 (373) T PRK12295 82 PARYSYLGEVFRQRRD--------RAS--EFLQAGIESFGRADPAAADA---EVLALALEALAALGPADLEI 140 (373) T ss_pred CEEEEEECCEEECCCC--------CCC--CEEEEEEEEECCCCCCCCCH---HHHHHHHHHHHHCCCCCEEE T ss_conf 8007877332245799--------988--51670157857898210649---99999999999759976399 |
|
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
---|
Probab=96.69 E-value=0.0066 Score=42.37 Aligned_cols=142 Identities=16% Similarity=0.169 Sum_probs=93.6 Q ss_pred ECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHH-HHHHCHHHHHHHHHHHHC-----CEECCCCCCHHHHHH Q ss_conf 05648899999999999862232032021235620278898-655142247677643100-----023134541145445 Q gi|254780680|r 167 LTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMY-GTGQIPKFADDMFCTTDG-----RWLIPTSEVSLTNLY 240 (430) Q Consensus 167 Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~-gtG~lp~f~~~~y~~~d~-----l~Li~TaEvpL~~~~ 240 (430) T Consensus 16 ~lP~ea~~~~~l~~~l~~~-f~~~Gy~~V~tP~lE~~e~l~~~~g~--~~~~~~f~~~D~~sGr~l~LRpD~T~~vARi~ 92 (391) T PRK12421 16 LLPEEAQKIERLRRRLLDL-FASRGYQLVMPPFIEYLESLLTGAGQ--DLDLQTFKLIDQLSGRLMGVRADITPQVARID 92 (391) T ss_pred CCHHHHHHHHHHHHHHHHH-HHHCCCEEEECCCCCCHHHHCCCCCC--CCCEEEEEEEECCCCCEEEECCCCCHHHHHHH T ss_conf 8999999999999999999-99869976216760728785656687--34147999961799978655653206889999 Q ss_pred HHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEE-EEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCHHHH Q ss_conf 34205955504208853221078843355434321222-21020021212786501457898999999999984106753 Q gi|254780680|r 241 SHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQ-HQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLHYRV 319 (430) Q Consensus 241 ~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~Rv-HQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~lpyRv 319 (430) T Consensus 93 a-~~-~~~~~p~Rl~Y~G~V~R~~~~~~-----gr~Ref~Q~-G~EliG~~~~~----aD~EvI~l~~~~L~~lGl~~~~ 160 (391) T PRK12421 93 A-HL-LNREGVARYCYAGSVLHTLPQGL-----NASRAPLQL-GAELYGHAGIE----ADIEIIDLMLGLLRNAGVEGLH 160 (391) T ss_pred H-HH-CCCCCCEEEEEECEEEECCCCCC-----CCCCCCEEC-CEEEECCCCHH----HHHHHHHHHHHHHHHCCCCCEE T ss_conf 8-74-04688657999651775168888-----876652150-58985699879----8999999999999976998069 Q ss_pred CCCC Q ss_conf 0378 Q gi|254780680|r 320 VSLC 323 (430) Q Consensus 320 v~~~ 323 (430) T Consensus 161 l~lg 164 (391) T PRK12421 161 LDLG 164 (391) T ss_pred EEEC T ss_conf 9968 |
|
>TIGR00442 hisS histidyl-tRNA synthetase; InterPro: IPR015807 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
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Probab=96.23 E-value=0.032 Score=37.29 Aligned_cols=156 Identities=21% Similarity=0.276 Sum_probs=109.9 Q ss_pred EECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHH-HHHCHH-HHHHHHHHH----HCCEECCCCCCHHHHH Q ss_conf 1056488999999999998622320320212356202788986-551422-476776431----0002313454114544 Q gi|254780680|r 166 VLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYG-TGQIPK-FADDMFCTT----DGRWLIPTSEVSLTNL 239 (430) Q Consensus 166 ~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~g-tG~lp~-f~~~~y~~~----d~l~Li~TaEvpL~~~ 239 (430) T Consensus 13 ~~p~~~-~~~~~~~~~~~~~-~~~~g~~~~~~P~~e~~~~~~~~~~~~~~~~~~~~y~f~d~~~~~~~lrp~~t~~~~r~ 90 (446) T TIGR00442 13 WLPGEL-VYRQWIEAKLRSV-LESYGYSEIRTPIFEYTELFARGIGKSGDEVEKELYTFKDKGGRDLALRPELTAPVVRL 90 (446) T ss_pred CCCHHH-HHHHHHHHHHHHH-HHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHEEEECCCCCEEEECCCHHHHHHHH T ss_conf 254157-8999999999999-97517720012114445666530253013344443012127884144222003689999 Q ss_pred HHHHCCCH-HHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCHH- Q ss_conf 53420595-5504208853221078843355434321222210200212127865014578989999999999841067- Q gi|254780680|r 240 YSHEIIES-KSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLHY- 317 (430) Q Consensus 240 ~~~~~l~~-~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~lpy- 317 (430) T Consensus 91 ~~~~~~~~~~~~p~~~~~~g~~~r~e~p~----~~gr~r~f~~~~~~~~G~~~~----~~~~~~~~~~~~~~~~~g~~~~ 162 (446) T TIGR00442 91 VAENKLLLPANKPLRLYYIGPVFRYERPQ----LKGRYREFWQFGCEVIGSESP----LADAEVLSLAVEGLKALGLEGH 162 (446) T ss_pred HHHHHHHCCCCCCEEEEEEECHHHCCCHH----HHCCHHHHHHCCEEEECCCCC----HHHHHHHHHHHHHHHHHCCCCE T ss_conf 98754310467642432320101022412----301011332115046436652----0368999999998986076632 Q ss_pred -HHCCCCCHHCCCHH Q ss_conf -53037801178443 Q gi|254780680|r 318 -RVVSLCTGDLGFSA 331 (430) Q Consensus 318 -Rvv~~~sgdlg~~a 331 (430) T Consensus 163 ~~~~~~~~g~~~~~~ 177 (446) T TIGR00442 163 FKLKLNHLGILEGIL 177 (446) T ss_pred EEEEECCCHHHHHHH T ss_conf 788741300145666 |
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Histidyl-tRNA synthetase (6.1.1.21 from EC) is an alpha2 dimer that belongs to class IIa. Every completed genome includes a histidyl-tRNA synthetase. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and not demonstrated to act as histidyl-tRNA synthetases (see IPR004517 from INTERPRO). The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation, but these regulatory proteins are not orthologous.; GO: 0000166 nucleotide binding, 0004821 histidine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006427 histidyl-tRNA aminoacylation, 0005737 cytoplasm. |
>TIGR00457 asnS asparaginyl-tRNA synthetase; InterPro: IPR004522 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
---|
Probab=95.67 E-value=0.016 Score=39.43 Aligned_cols=145 Identities=23% Similarity=0.412 Sum_probs=76.0 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHH-HHHHHH--------------HCCEECCCC Q ss_conf 56488999999999998622320320212356202788986551422476-776431--------------000231345 Q gi|254780680|r 168 TGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFAD-DMFCTT--------------DGRWLIPTS 232 (430) Q Consensus 168 kg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~-~~y~~~--------------d~l~Li~Ta 232 (430) T Consensus 142 ~~AvmrvR~~l~~ai~~yF-~~~gF~~V~~PilT~~d-~EGAGElF~v~TLdl~~lp~~~g~~df~~~fFgk~ayLT--- 216 (495) T TIGR00457 142 LGAVMRVRNALSQAIHEYF-QKNGFVKVSPPILTSND-CEGAGELFKVSTLDLEKLPRNDGKIDFSKDFFGKEAYLT--- 216 (495) T ss_pred HHHHHHHHHHHHHHHHHHH-HCCCCEEECCCEEECCC-CCCCCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCEEEEE--- T ss_conf 7789999999999999876-04786786886311368-888754332200324215332688876302488601233--- Q ss_pred CCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEE-EEECCCCCCHHHHHHHHHHHH-HHHH Q ss_conf 41145445342059555042088532210788433554343212222102002-121278650145789899999-9999 Q gi|254780680|r 233 EVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCE-LVSITREEDSFTEHERMLSCA-EEIL 310 (430) Q Consensus 233 EvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE-~~~~~~pe~S~~~~e~~~~~~-~~i~ 310 (430) T Consensus 217 ---VSGQL~~E~~A~A-L-~kvyTfGPTFRAEk-S~--T~R---HLsEFWMiEPE~AF~~l~d~~~~~E~~~k~~~k~VL 285 (495) T TIGR00457 217 ---VSGQLYAEAYALA-L-SKVYTFGPTFRAEK-SN--TSR---HLSEFWMIEPEMAFANLNDLLQLIETLIKYIIKAVL 285 (495) T ss_pred ---ECCHHHHHHHHHH-H-CCCEECCCCEECCC-CC--CCC---CHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHHHHH T ss_conf ---0227899999997-4-78144587400428-64--870---111221011200000133338999999999999983 Q ss_pred HH--HCCHHHHCCCCCHH---CCCH Q ss_conf 98--41067530378011---7844 Q gi|254780680|r 311 KR--LDLHYRVVSLCTGD---LGFS 330 (430) Q Consensus 311 ~~--L~lpyRvv~~~sgd---lg~~ 330 (430) T Consensus 286 ~~~qellPkq--fi~~~enn~~~~L 308 (495) T TIGR00457 286 ENQQELLPKQ--FICSQENNLLKFL 308 (495) T ss_pred CCHHHHCCHH--HCCCCHHHHHHHH T ss_conf 0524504201--0377713799986 |
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . AsparaginyltRNA synthetase (6.1.1.22 from EC) is an alpha2 dimer that belongs to class IIb. There is a striking similarity between asparaginyl-tRNA synthetases and archaeal/eukaryotic type aspartyl-tRNA synthetases (IPR004523 from INTERPRO) and a striking divergence of bacterial type aspartyl-tRNA synthetases (IPR004524 from INTERPRO). This family, AsnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.; GO: 0000166 nucleotide binding, 0004816 asparagine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006421 asparaginyl-tRNA aminoacylation, 0005737 cytoplasm. |
>TIGR00418 thrS threonyl-tRNA synthetase; InterPro: IPR002320 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
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Probab=99.82 E-value=1.5e-20 Score=173.53 Aligned_cols=355 Identities=19% Similarity=0.258 Sum_probs=244.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHH-HHHHHHHHHHHH---HHHHHHH--HHH-HHHHH--HHC Q ss_conf 99999999999999999999999998644-99879999999-999999886444---6666677--888-77443--100 Q gi|254780680|r 36 KNRILIKKIEDIRARRNSNSAQIGQAIAE-GNLSLVDALKN-ETSTLKEQLPIL---EKEEHEV--CSS-LKKLI--SCI 105 (430) Q Consensus 36 ~rr~l~~e~e~LraerN~lSKeIg~~k~~-~~~~~~~~Lk~-e~~~Lk~eik~l---e~~~~~l--e~e-l~~ll--l~I 105 (430) T Consensus 38 ~~~~~~~dl~~ie~~m~~~~~~~~~~~~~~~s~~~A~~~f~~~~~~~k~~l~~~~~~~~~~~~~y~~~~~f~dlC~GpHl 117 (595) T TIGR00418 38 DKSITEEDLEKIEKEMKEIIKKNYPIARLSVSLEEALEAFKEVGEPLKLELLDEIIPNGEAVTVYGQGEAFVDLCRGPHL 117 (595) T ss_pred CHHCCHHHHHHHHHHHHHHHHHHCCEEEEEECHHHHHHHHHHHCCHHHHHHHHHCCCCCCCEEEECCCCEEEECCCCCCC T ss_conf 00027789999999999998640570257724789999998621312267785104566642042252134561579768 Q ss_pred CCCCCCHHHH-------------CCCCCCCEEEEEEC--CCCCCC--------------CCCC--CCCCHHHHCCCCCHH Q ss_conf 2258811221-------------13555402420001--565665--------------6662--112202211731000 Q gi|254780680|r 106 PNVPLEEVPI-------------GTSANENILIRSVG--KKPSAI--------------HLSR--EHFEIGEALGLMDFD 154 (430) Q Consensus 106 PNi~~~~VP~-------------G~de~dNv~i~~~G--~~~~f~--------------f~~k--~H~elge~l~liDfe 154 (430) T Consensus 118 p~~~~~~~~~~~fkL~~~~gaYw~Gd~~n~~LqRiyGn~~~~~~~~k~~L~~yl~~~eEa~~r~PDHRklGKeL~Lf~f~ 197 (595) T TIGR00418 118 PNTSRIKPAQKAFKLEKVAGAYWRGDSKNEMLQRIYGNIDITAFADKKQLAEYLKRLEEAKKREPDHRKLGKELELFSFE 197 (595) T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCC T ss_conf 32356676403456654323310268898537888572545014587899999999999742685725675453123458 Q ss_pred HHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHH-HH---HCCEECC Q ss_conf 1122216753010564889999999999986223203202123562027889865514224767764-31---0002313 Q gi|254780680|r 155 RATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFC-TT---DGRWLIP 230 (430) Q Consensus 155 ~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~-~~---d~l~Li~ 230 (430) T Consensus 198 ~~---~gpG~~~WlPkG~~ir~~ledf~~~~~-~~~Gy~~V~TP~m~~~~l~~~sGH~~~Y~e~Mf~~~~~~~~~~~LkP 273 (595) T TIGR00418 198 PE---IGPGLPFWLPKGALIRNLLEDFVREKQ-IKRGYEEVETPIMYDSELWEISGHWDHYKERMFPFTEEDNQEFMLKP 273 (595) T ss_pred CC---CCCCCEEECCCHHHHHHHHHHHHHHHH-HHCCCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCC T ss_conf 32---048741465764678999999999999-87588641574121565424530545034235401010353033456 Q ss_pred CCCCHHHHHHHHHCCCHHHHCCEEEEEE-CCCCCCC-CCCCCCCCCEEEEEEEEEEEEEECCC-CCCHHHHHHHHHHHHH Q ss_conf 4541145445342059555042088532-2107884-33554343212222102002121278-6501457898999999 Q gi|254780680|r 231 TSEVSLTNLYSHEIIESKSLPLRFTTLA-PSFRSEA-GSAGRDTRGMLRQHQFWKCELVSITR-EEDSFTEHERMLSCAE 307 (430) Q Consensus 231 TaEvpL~~~~~~~~l~~~~LPik~~~~s-~cfR~Ea-Gs~GkdtrGl~RvHQF~KVE~~~~~~-pe~S~~~~e~~~~~~~ 307 (430) T Consensus 274 MnCpgH~~i~k~~~~SYR~LP~R~aE~g~~~hR~E~sG~----L~GL~RvR~FT~dDaHifc~d~dQi~~E~~~~~~l~~ 349 (595) T TIGR00418 274 MNCPGHILIFKSSLRSYRDLPLRIAELGTTVHRYEKSGA----LHGLKRVRGFTQDDAHIFCTDEDQIKSEIKNQFRLIQ 349 (595) T ss_pred CCCHHHHHHHCCCCCCHHHCCCHHHHCCCEEEEEECCCC----CCHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHHHHH T ss_conf 775445330017777732335034331860478842542----1010164430699852453786779999999999999 Q ss_pred HHHHHHCCHHHHCCCCCHHCCCHHHEEE--EEEEECCCC--------------------CCE--------------EEEE Q ss_conf 9999841067530378011784434024--101101004--------------------833--------------2375 Q gi|254780680|r 308 EILKRLDLHYRVVSLCTGDLGFSACKTY--DLEVWLAGQ--------------------NLY--------------REIS 351 (430) Q Consensus 308 ~i~~~L~lpyRvv~~~sgdlg~~a~~~~--DiE~w~P~~--------------------~~y--------------~Ev~ 351 (430) T Consensus 350 ~v~~~fgf~~~~~~LS~R~Pe~--~~Ky~g~d~~W~~~~~~l~~~l~~~~~~yei~~G~~AFYGPKiDf~~~DaL~R~~q 427 (595) T TIGR00418 350 KVYSKFGFSNYKYELSTRDPEN--DKKYIGEDELWEKAESALEEALKELGVDYEIDEGEGAFYGPKIDFQIKDALGREWQ 427 (595) T ss_pred HHHHHHCCCCCEEEEEECCCCC--CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEECCEEEEEEEECCCCHHH T ss_conf 9988728842168998717775--45545887899999999999985079840550788113022268887510176425 Q ss_pred EECCCCCHHH-HHCCCEEECCC--CCCCCEEEEECCCHH-HHHHHHHHHHHHCC Q ss_conf 3102100764-53268473389--984101042004322-89999999988346 Q gi|254780680|r 352 SCSTCGNFQS-RRMNSRYRDPN--SKSLKFTHTLNGSGV-AVGRCLIAILENYL 401 (430) Q Consensus 352 S~Snc~D~Qs-rRl~iry~~~~--~~~~~~~htlNgt~~-A~~R~l~ailEn~q 401 (430) T Consensus 428 ~~TvQlDf~lPeRF~l~Y~~~dqd~~~-~~Pv~IHra~~GS~ERfi~iL~E~~~ 480 (595) T TIGR00418 428 CATVQLDFELPERFDLTYINEDQDNKE-KRPVMIHRAILGSIERFIAILLEKYA 480 (595) T ss_pred CCCEEEECCCCCCCCCEEEEECCCCCC-CCCEEEECCCCHHHHHHHHHHHHHHH T ss_conf 881488715887203148420367870-06778980440058999999998752 |
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Threonyl-tRNA synthetase (6.1.1.3 from EC) exists as a monomer and belongs to class IIa. The enzyme from Escherichia coli represses the translation of its own mRNA. The crystal structure of the complex between tRNA(Thr) and ThrRS show structural features that reveal novel strategies for providing specificity in tRNA selection. These include an amino-terminal domain containing a novel protein fold that makes minor groove contacts with the tRNA acceptor stem. The enzyme induces a large deformation of the anticodon loop, resulting in an interaction between two adjacent anticodon bases, which accounts for their prominent role in tRNA identity and translational regulation. A zinc ion found in the active site is implicated in amino acid recognition/discrimination . The zinc ion may act to ensure that only amino acids that possess a hydroxyl group attached to the beta-position are activated .; GO: 0004829 threonine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006435 threonyl-tRNA aminoacylation, 0005737 cytoplasm. |
>pfam02403 Seryl_tRNA_N Seryl-tRNA synthetase N-terminal domain | Back alignment and domain information |
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Probab=99.82 E-value=5.2e-19 Score=162.03 Aligned_cols=107 Identities=40% Similarity=0.596 Sum_probs=102.4 Q ss_pred CCCHHHHHCCHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH Q ss_conf 988447851999999999846989-5889999999999999999999999999999999998644998799999999999 Q gi|254780680|r 1 MLDIQWIRQNPEHLDIALKKRHLE-PQSEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQAIAEGNLSLVDALKNETST 79 (430) Q Consensus 1 MLDik~IRen~e~v~~~l~~R~~~-~~id~il~Ld~~rr~l~~e~e~LraerN~lSKeIg~~k~~~~~~~~~~Lk~e~~~ 79 (430) T Consensus 1 MlDik~ir~n~~~v~~~l~~R~~~~~~~~~i~~ld~~~r~~~~~~e~L~~~~N~~sk~ig~~~~~~~--~~~~l~~~~~~ 78 (108) T pfam02403 1 MLDIKLIRENPEAVKEKLRKRGVDVLDVDELLELDEERRELQVELEELQAERNELSKEIGKAKKKKE--DAEALIAEVKE 78 (108) T ss_pred CCCHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHH T ss_conf 9888998809999999998829988789999999999999999999999998598999999875774--16889999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 998864446666677888774431002258 Q gi|254780680|r 80 LKEQLPILEKEEHEVCSSLKKLISCIPNVP 109 (430) Q Consensus 80 Lk~eik~le~~~~~le~el~~lll~IPNi~ 109 (430) T Consensus 79 lk~~i~~le~~~~~~e~~l~~~l~~iPNiP 108 (108) T pfam02403 79 LKDELKALEAELRELEAELDKLLLSIPNIP 108 (108) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 999999999999999999999988389999 |
This domain is found associated with the Pfam tRNA synthetase class II domain (pfam00587) and represents the N-terminal domain of seryl-tRNA synthetase. |
>TIGR00019 prfA peptide chain release factor 1; InterPro: IPR004373 This family describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2) | Back alignment and domain information |
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Probab=95.64 E-value=0.26 Score=30.49 Aligned_cols=106 Identities=21% Similarity=0.289 Sum_probs=66.0 Q ss_pred HHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-CCCHHHHHHHHHHHHH Q ss_conf 44785199999999984698958899999999999999999999999999999999986---4-4998799999999999 Q gi|254780680|r 4 IQWIRQNPEHLDIALKKRHLEPQSEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQAI---A-EGNLSLVDALKNETST 79 (430) Q Consensus 4 ik~IRen~e~v~~~l~~R~~~~~id~il~Ld~~rr~l~~e~e~LraerN~lSKeIg~~k---~-~~~~~~~~~Lk~e~~~ 79 (430) T Consensus 10 L~~~~~~~~eL~~~L~dp~v~~d~~k~~~~~ke~~~l~-~i~~~~~~~~~~~~~~~~A~~~l~E~~~D~El~e------l 82 (373) T TIGR00019 10 LESLEERYEELEELLSDPEVISDQDKLRKLSKEYSQLE-EIVDKYEEYKKAQEDLKEAKELLEEKGDDKELRE------L 82 (373) T ss_pred HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH------H T ss_conf 99999999999985068631136799999988620656-8999999999999999999999974258865899------9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCEEEE Q ss_conf 99886444666667788877443100225881122113555402420 Q gi|254780680|r 80 LKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTSANENILIR 126 (430) Q Consensus 80 Lk~eik~le~~~~~le~el~~lll~IPNi~~~~VP~G~de~dNv~i~ 126 (430) T Consensus 83 ak~El~~l~~~~~~LE~~Lk~LL--l--------PkDPND~kNv~lE 119 (373) T TIGR00019 83 AKEELEELEKEIEELEEQLKILL--L--------PKDPNDEKNVILE 119 (373) T ss_pred HHHHHHHHHHHHHHHHHHHHHHC--C--------CCCCCCCCCEEEE T ss_conf 99999999988888999999726--8--------8697669534888 |
RF-1 helps recognise and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cut-off for this model. RF-1 does not have a translational frameshift.; GO: 0016149 translation release factor activity codon specific, 0006415 translational termination, 0005737 cytoplasm. |
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD | Back alignment and domain information |
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Probab=93.41 E-value=0.82 Score=26.78 Aligned_cols=97 Identities=19% Similarity=0.141 Sum_probs=50.1 Q ss_pred HHHCCHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH------HHHHHHHHHH Q ss_conf 785199999999984698958-899999999999999999999999999999999986449987------9999999999 Q gi|254780680|r 6 WIRQNPEHLDIALKKRHLEPQ-SEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQAIAEGNLS------LVDALKNETS 78 (430) Q Consensus 6 ~IRen~e~v~~~l~~R~~~~~-id~il~Ld~~rr~l~~e~e~LraerN~lSKeIg~~k~~~~~~------~~~~Lk~e~~ 78 (430) T Consensus 186 ~l~~dL~~~~~r~~~~~~~~~~~~~l~~l~~~~~~~~~~~e~~~~~~~~~~~el~~~~~~~~~~~~~~~~~g~~l~~~r~ 265 (650) T TIGR03185 186 QLAGDLTNYLRRRKKEELPSSILSEIEALEAELKEQSSKYEDLEQDIAHARQEIEEAQRSLESLKKKFEDEGGDIAEERE 265 (650) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999987501014579999999999999999999999999999999999999999999999985347799999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999886444666667788877443 Q gi|254780680|r 79 TLKEQLPILEKEEHEVCSSLKKLI 102 (430) Q Consensus 79 ~Lk~eik~le~~~~~le~el~~ll 102 (430) T Consensus 266 ~le~~~~~l~~~~~~~~~~l~~~~ 289 (650) T TIGR03185 266 QLERQLKEIEAKRKANRAELRELI 289 (650) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999999998 |
This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria. |
>pfam07106 TBPIP Tat binding protein 1(TBP-1)-interacting protein (TBPIP) | Back alignment and domain information |
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Probab=92.99 E-value=0.94 Score=26.33 Aligned_cols=68 Identities=15% Similarity=0.220 Sum_probs=50.2 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 58899999999999999999999999999999999986449987999999999999988644466666778 Q gi|254780680|r 25 PQSEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQAIAEGNLSLVDALKNETSTLKEQLPILEKEEHEVC 95 (430) Q Consensus 25 ~~id~il~Ld~~rr~l~~e~e~LraerN~lSKeIg~~k~~~~~~~~~~Lk~e~~~Lk~eik~le~~~~~le 95 (430) T Consensus 69 ~~~eel~~~d~~i~~L~~~l~~l~~~~~~l~~el~~L~s~~t~---eel~~~i~~L~~e~~~l~~kL~~l~ 136 (169) T pfam07106 69 PSDEELNKLDMEIEELREEVQLLKQDCSTLEIELKSLTSDLTT---EELQEEIQELKKEVREIEEKLESLE 136 (169) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9988998769999999999999999999999999998758999---9999999999999999999999988 |
This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation. |
>PRK00591 prfA peptide chain release factor 1; Validated | Back alignment and domain information |
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Probab=92.86 E-value=0.98 Score=26.21 Aligned_cols=106 Identities=18% Similarity=0.243 Sum_probs=52.7 Q ss_pred HHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH Q ss_conf 447851999999999846989588999999999999999999999---99999999999986449987999999999999 Q gi|254780680|r 4 IQWIRQNPEHLDIALKKRHLEPQSEYILSLDEKNRILIKKIEDIR---ARRNSNSAQIGQAIAEGNLSLVDALKNETSTL 80 (430) Q Consensus 4 ik~IRen~e~v~~~l~~R~~~~~id~il~Ld~~rr~l~~e~e~Lr---aerN~lSKeIg~~k~~~~~~~~~~Lk~e~~~L 80 (430) T Consensus 9 Le~l~~rl~eLe~~ls~p~fW~D~~~a~kl~kE~~~L~~~v~~~~~l~~~~~dl~el~-eLl~ee~D~e---l~---e~a 81 (360) T PRK00591 9 LEALEERYEELEALLSDPEVISDQKRFRKLSKEYAELEPIVEAYREYKQAEEDLEDAK-ELLKEESDPE---MR---EMA 81 (360) T ss_pred HHHHHHHHHHHHHHHHCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCCHH---HH---HHH T ss_conf 9999999999999872985212999999999999999999999999999999899999-9986279978---99---999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCEEEE Q ss_conf 9886444666667788877443100225881122113555402420 Q gi|254780680|r 81 KEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTSANENILIR 126 (430) Q Consensus 81 k~eik~le~~~~~le~el~~lll~IPNi~~~~VP~G~de~dNv~i~ 126 (430) T Consensus 82 ~~El~~l~~~l~~lE~eL~~lLl--p--------~d~~D~~nailE 117 (360) T PRK00591 82 KEELKELEERLEELEEELKILLL--P--------KDPNDDKNVILE 117 (360) T ss_pred HHHHHHHHHHHHHHHHHHHHHHC--C--------CCCCCCCCEEEE T ss_conf 99999999999999999999837--9--------997756785899 |
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>TIGR02231 TIGR02231 conserved hypothetical protein; InterPro: IPR011935 This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp | Back alignment and domain information |
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Probab=92.05 E-value=1.2 Score=25.50 Aligned_cols=93 Identities=19% Similarity=0.233 Sum_probs=61.2 Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------C------------------ Q ss_conf 99846989588999999999999999999999999999999999864--------------4------------------ Q gi|254780680|r 17 ALKKRHLEPQSEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQAIA--------------E------------------ 64 (430) Q Consensus 17 ~l~~R~~~~~id~il~Ld~~rr~l~~e~e~LraerN~lSKeIg~~k~--------------~------------------ 64 (430) T Consensus 60 ~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~~~~~l~~~~~~L~K~~~~~~~~~~~~~~~sg~~~~~~~~~~~~~~~f 139 (558) T TIGR02231 60 TIRERTSRADPERLAELDKQIRELEAELRDLEDRGDALKALKSNLDKFLEDIREGLTEPIKDSGVLKRNEPDLKELKQLF 139 (558) T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHHHHHH T ss_conf 32114774642368999999999999998777788899985301025677774201467321523561576568999999 Q ss_pred -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCCC Q ss_conf -998799999999999998864446666677888774431--002258 Q gi|254780680|r 65 -GNLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLIS--CIPNVP 109 (430) Q Consensus 65 -~~~~~~~~Lk~e~~~Lk~eik~le~~~~~le~el~~lll--~IPNi~ 109 (430) T Consensus 140 ~~~~~~~~~~~~~~r~~~~~~~el~~~~~~L~~el~~~~~~s~~~~~~ 187 (558) T TIGR02231 140 DFVGSEIERLLTEDREVERRIRELEKQLSELENELRALLTLSGKEQRS 187 (558) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE T ss_conf 988999999988877899999999999999999998741104786604 |
PCC 7120, Leptospira interrogans, etc.). The function is unknown.. |
>PRK09194 prolyl-tRNA synthetase; Provisional | Back alignment and domain information |
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Probab=99.80 E-value=1.3e-18 Score=159.03 Aligned_cols=193 Identities=23% Similarity=0.298 Sum_probs=163.4 Q ss_pred CCCCCCCCCCCCCCHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHH Q ss_conf 56566566621122022117310001122216753010564889999999999986223203202123562027889865 Q gi|254780680|r 130 KKPSAIHLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGT 209 (430) Q Consensus 130 ~~~~f~f~~k~H~elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gt 209 (430) T Consensus 13 e~P~-dae~~Sh-~Ll~raG~Ir~------~~sGiy~~LPlg~rvl~Kie~IIr~-em~~iGa~Ev~mp~l~p~elW~~s 83 (570) T PRK09194 13 ETPA-DAEVISH-QLMLRAGYIRK------LASGIYTYLPLGLRVLRKIENIVRE-EMNKIGAQEVLMPALQPAELWQES 83 (570) T ss_pred CCCC-CCCHHHH-HHHHHCCCCCC------CCCCHHHHHHHHHHHHHHHHHHHHH-HHHHCCCEEEECCCCCCHHHHHHC T ss_conf 7974-3245669-99987067341------4377255424369999999999999-998649879853567977898761 Q ss_pred HHCHHHHHHHHHHHH----CCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEE Q ss_conf 514224767764310----0023134541145445342059555042088532210788433554343212222102002 Q gi|254780680|r 210 GQIPKFADDMFCTTD----GRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCE 285 (430) Q Consensus 210 G~lp~f~~~~y~~~d----~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE 285 (430) T Consensus 84 gR~~~~g~el~r~kDR~~~~~~L~PThEE~it~lv~~~i~SYkqLP~~lYQIqtKfRDE~RP----R~GllR~REF~MKD 159 (570) T PRK09194 84 GRWEKYGPELLRLKDRHGRDFVLGPTHEEVITDLVRNEIKSYKQLPLNLYQIQTKFRDEIRP----RFGLMRGREFIMKD 159 (570) T ss_pred CCHHHCCHHHEEEECCCCCEEEECCCCHHHHHHHHHHHHCCHHHCCHHEECCCCEECCCCCC----CCCCHHHHHHHHHC T ss_conf 88212361346985278985653787389999999985113764680200132333477887----67623456534512 Q ss_pred EEECCCC-CCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCCHHHEEE Q ss_conf 1212786-5014578989999999999841067530378011784434024 Q gi|254780680|r 286 LVSITRE-EDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTY 335 (430) Q Consensus 286 ~~~~~~p-e~S~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~~a~~~~ 335 (430) T Consensus 160 aYSFd~~~e~l~~tY~~~~~AY~~IF~rlgL~~~~v~ADsG~iGG~~ShEF 210 (570) T PRK09194 160 AYSFHADEESLDETYDAMYQAYSRIFTRLGLDFRAVEADSGAIGGSASHEF 210 (570) T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEE T ss_conf 456669989999999999999999999809862999914667588665237 |
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>PRK00476 aspS aspartyl-tRNA synthetase; Validated | Back alignment and domain information |
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Probab=97.20 E-value=0.0009 Score=48.79 Aligned_cols=147 Identities=19% Similarity=0.365 Sum_probs=69.4 Q ss_pred CCCCCCCCCCCCCCCHHHHC----CCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHH Q ss_conf 15656656662112202211----73100011222167530105648899999999999862232032021235620278 Q gi|254780680|r 129 GKKPSAIHLSREHFEIGEAL----GLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDE 204 (430) Q Consensus 129 G~~~~f~f~~k~H~elge~l----~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~ 204 (430) T Consensus 105 ska~~lP~~~~~~~~~~e~~Rl~~RyLDL-r~-~~~~--------~~fr~Rs~i~~~iR~f-l~~~gFiEVeTPiL~~s~ 173 (587) T PRK00476 105 NKSKTLPFQIDDETNVSEELRLKYRYLDL-RR-PEMQ--------NNLKLRSKVTSAIRNF-LDDNGFLEIETPILTKST 173 (587) T ss_pred ECCCCCCCCCCCCCCCCHHHHHHHHHHHH-CC-HHHH--------HHHHHHHHHHHHHHHH-HHHCCCCEECCCCCCCCC T ss_conf 76889998865566777888655478887-21-7788--------9999999999999999-997597400475432568 Q ss_pred HHHHHHHC--HHHHHHHHHHHHCCE-ECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEE Q ss_conf 89865514--224767764310002-313454114544534205955504208853221078843355434321222210 Q gi|254780680|r 205 AMYGTGQI--PKFADDMFCTTDGRW-LIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQF 281 (430) Q Consensus 205 ~~~gtG~l--p~f~~~~y~~~d~l~-Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF 281 (430) T Consensus 174 -~eGA~~F~vps---r~~~--~~fyaL-~qSP----QLyk-q~L~vgG~-erVyeig~~FRnE-~~---~t~---r~pEF 233 (587) T PRK00476 174 -PEGARDYLVPS---RVHP--GKFYAL-PQSP----QLFK-QLLMVAGF-DRYYQIARCFRDE-DL---RAD---RQPEF 233 (587) T ss_pred -CCCCCCCCCCC---CCCC--CCEECC-CCCH----HHHH-HHHHHCCC-CEEEEECCCCCCC-CC---CCC---CCCHH T ss_conf -66664430131---0578--855135-6797----9999-99885175-5279964312388-88---766---68234 Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 2002121278650145789899999999998 Q gi|254780680|r 282 WKCELVSITREEDSFTEHERMLSCAEEILKR 312 (430) Q Consensus 282 ~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~ 312 (430) T Consensus 234 t~lE~E~------af~d~~dvm~~~E~li~~ 258 (587) T PRK00476 234 TQIDIEM------SFVTQEDVMDLMEGLIRH 258 (587) T ss_pred HEEEHHH------HCCCHHHHHHHHHHHHHH T ss_conf 2311111------116899999999999999 |
|
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
---|
Probab=96.04 E-value=0.034 Score=37.05 Aligned_cols=179 Identities=20% Similarity=0.306 Sum_probs=103.7 Q ss_pred CCCCCCHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHH----CCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHH Q ss_conf 225881122113555402420001565665666211220221----1731000112221675301056488999999999 Q gi|254780680|r 106 PNVPLEEVPIGTSANENILIRSVGKKPSAIHLSREHFEIGEA----LGLMDFDRATKLSGARFSVLTGHLAHLERALGQF 181 (430) Q Consensus 106 PNi~~~~VP~G~de~dNv~i~~~G~~~~f~f~~k~H~elge~----l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y 181 (430) T Consensus 81 e~~~N~~l~TGeiEv~a~~i~vln~s~~lPf~i~d~~~~~Ee~RLkYRyLDLRR~~---------m~~~l-~lR~kv~~~ 150 (585) T COG0173 81 EGTINPNLPTGEIEVLAEEIEVLNASKTLPFQIEDETNASEEIRLKYRYLDLRRPE---------MQKNL-KLRSKVTKA 150 (585) T ss_pred CCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHH---------HHHHH-HHHHHHHHH T ss_conf 55668888861499996268998647889947788888652220244555636888---------99999-999999999 Q ss_pred HHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHH---HHHH-CCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEE Q ss_conf 998622320320212356202788986551422476776---4310-002313454114544534205955504208853 Q gi|254780680|r 182 MIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMF---CTTD-GRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTL 257 (430) Q Consensus 182 ~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y---~~~d-~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~ 257 (430) T Consensus 151 iR~~-ld~~gF~EiETPiLtkST--------PEGARDfLVPSRv~~G~FYALPQSPQlfK-----QLLMvsG-fdRYyQI 215 (585) T COG0173 151 IRNF-LDDQGFLEIETPILTKST--------PEGARDFLVPSRVHPGKFYALPQSPQLFK-----QLLMVAG-FDRYYQI 215 (585) T ss_pred HHHH-HHHCCCEEEECCCCCCCC--------CCCCCCCCCCCCCCCCCEEECCCCHHHHH-----HHHHHHC-CCCEEEE T ss_conf 9997-765498573467414679--------86554430134558996530688879999-----9998805-3300235 Q ss_pred ECCCCCCCCCCCCCCCCEEEEEEEEEEEE-EECCCCCCHHHHHHHHHHHHHHHHHHHCCH Q ss_conf 22107884335543432122221020021-212786501457898999999999984106 Q gi|254780680|r 258 APSFRSEAGSAGRDTRGMLRQHQFWKCEL-VSITREEDSFTEHERMLSCAEEILKRLDLH 316 (430) Q Consensus 258 s~cfR~EaGs~GkdtrGl~RvHQF~KVE~-~~~~~pe~S~~~~e~~~~~~~~i~~~L~lp 316 (430) T Consensus 216 arCFRDED------lR-aDRQPEFTQiD~EmSF~~~edv~~~~E~l~~~vf~~~~~i~l~ 268 (585) T COG0173 216 ARCFRDED------LR-ADRQPEFTQIDLEMSFVDEEDVMELIEKLLRYVFKEVKGIELK 268 (585) T ss_pred EEEECCCC------CC-CCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 65404664------44-4468753367677643889999999999999999985097548 |
|
>PRK12420 histidyl-tRNA synthetase; Provisional | Back alignment and domain information |
---|
Probab=98.00 E-value=3.4e-05 Score=59.37 Aligned_cols=140 Identities=16% Similarity=0.183 Sum_probs=101.1 Q ss_pred EECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHH-HHCHHHHHHHHHHH----HCCEECCCCCCHHHHHH Q ss_conf 10564889999999999986223203202123562027889865-51422476776431----00023134541145445 Q gi|254780680|r 166 VLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGT-GQIPKFADDMFCTT----DGRWLIPTSEVSLTNLY 240 (430) Q Consensus 166 ~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gt-G~lp~f~~~~y~~~----d~l~Li~TaEvpL~~~~ 240 (430) T Consensus 12 D~lp~e~~~~~~i~~~~~~~-~~~~Gy~~I~tP~~E~~elf~~~~g~~~~i~kemy~f~D~~gr~l~LRPe~Ta~iaR~~ 90 (421) T PRK12420 12 DYLPEEQVLRNKIKRACEDT-FERYGCKPLETPTLNMYELMSYKYGGGDEILKEIYTLQDQGKRDLALRYDLTIPFAKVV 90 (421) T ss_pred CCCHHHHHHHHHHHHHHHHH-HHHCCCEEEECCCCCHHHHHCCCCCCCCHHHHHEEEEECCCCCEEEECCCCCHHHHHHH T ss_conf 78999999999999999999-99859947247650118764244788442241107888189987985677658999999 Q ss_pred HHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEE-EEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCHHH Q ss_conf 34205955504208853221078843355434321222-2102002121278650145789899999999998410675 Q gi|254780680|r 241 SHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQ-HQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLHYR 318 (430) Q Consensus 241 ~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~Rv-HQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~lpyR 318 (430) T Consensus 91 a~~--~~~~~P~k~~y~g~vfR~erpq-----~GR~ReF~Q~G-vEiiG~~~~----~aDaEiI~la~~~l~~lgl~~~ 157 (421) T PRK12420 91 AMN--PNIRLPFKRYEIGKVFRDGPIK-----QGRFREFIQCD-VDIVGVESV----MAEAELMSMAFELFRTLNLEVT 157 (421) T ss_pred HHC--CCCCCCEEEEEECCEEECCCCC-----CCCCCEEEECC-EEEECCCCH----HHHHHHHHHHHHHHHHCCCCEE T ss_conf 977--5777874588876778538987-----88555134357-542078877----8899999999999996598659 |
|
>CHL00201 syh histidine-tRNA synthetase; Provisional | Back alignment and domain information |
---|
Probab=97.75 E-value=0.00021 Score=53.40 Aligned_cols=145 Identities=19% Similarity=0.280 Sum_probs=102.2 Q ss_pred HCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHH-HHCHH-HHHHHHHHHH----CCEECCCC Q ss_conf 216753010564889999999999986223203202123562027889865-51422-4767764310----00231345 Q gi|254780680|r 159 LSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGT-GQIPK-FADDMFCTTD----GRWLIPTS 232 (430) Q Consensus 159 vsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gt-G~lp~-f~~~~y~~~d----~l~Li~Ta 232 (430) T Consensus 7 ~kG~r--D~lp~e~~~~~~i~~~i~~~-f~~~Gf~~I~TP~lE~~e~~~~~~g~~~d~i~k~~y~f~D~~g~~l~LRpD~ 83 (424) T CHL00201 7 LRGTK--DILPDEIEYWQFIHEKAATL-LKLANYQEIRTPIFENTELFDRGIGEETDIVNKEMYRFFDRGNRSITLRPEG 83 (424) T ss_pred CCCCC--CCCHHHHHHHHHHHHHHHHH-HHHCCCEEEECCCCCCHHHHCCCCCCCCHHHHHHHEEEECCCCCEEEECCCC T ss_conf 99998--78999999999999999999-9985992504754041988623578742056665325455999888867877 Q ss_pred CCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEE-EEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 4114544534205955504208853221078843355434321222-210200212127865014578989999999999 Q gi|254780680|r 233 EVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQ-HQFWKCELVSITREEDSFTEHERMLSCAEEILK 311 (430) Q Consensus 233 EvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~Rv-HQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~ 311 (430) T Consensus 84 T~piaR~~~~~~~~~~~~P~r~~y~g~vfR~e~pq~-----GR~REF~Q~-gvEiiG~~~~~----aDaEvi~l~~~~l~ 153 (424) T CHL00201 84 TASIVRAFIENRMAYHMRPQRLWYSGPMFRYERPQS-----GRQRQFHQL-GIEFIGSSDPR----ADMEVIHLAMTLFN 153 (424) T ss_pred HHHHHHHHHHCCCCCCCCCEEEEEECCEEECCCCCC-----CCCCHHHHC-CEEEECCCCHH----HHHHHHHHHHHHHH T ss_conf 099999999747655799878998754780589878-----864210414-62000689828----78999999999998 Q ss_pred HHCCH Q ss_conf 84106 Q gi|254780680|r 312 RLDLH 316 (430) Q Consensus 312 ~L~lp 316 (430) T Consensus 154 ~lgl~ 158 (424) T CHL00201 154 ELPVH 158 (424) T ss_pred HCCCC T ss_conf 65965 |
|
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
---|
Probab=97.73 E-value=0.0002 Score=53.68 Aligned_cols=140 Identities=21% Similarity=0.239 Sum_probs=99.1 Q ss_pred CEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHHH-----CCEECCCCCCHHHH Q ss_conf 3010564889999999999986223203202123562027889865514224767764310-----00231345411454 Q gi|254780680|r 164 FSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTD-----GRWLIPTSEVSLTN 238 (430) Q Consensus 164 F~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~d-----~l~Li~TaEvpL~~ 238 (430) T Consensus 9 ~~D~lp~e~~~~~~i~~~~~~~-f~~~Gy~~I~tP~lE~~e~f~~~~g-~~~~~~~~~f~D~~~Gr~l~LRpD~T~~iaR 86 (388) T PRK12292 9 IRDLLPEEARKIEEIRRRLLDV-FRLWGYEEVITPTLEYLDTLLTGGG-ADLDLRTFKLVDQLSGRTLGLRPDMTPQIAR 86 (388) T ss_pred CCCCCHHHHHHHHHHHHHHHHH-HHHCCCEEEECCCCCCHHHHCCCCC-CCCCHHEEEEEECCCCCEEEECCCCCHHHHH T ss_conf 8667999999999999999999-9987996735766062988544577-5021104899826999789856877199999 Q ss_pred HHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEE-EEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCH Q ss_conf 4534205955504208853221078843355434321222-21020021212786501457898999999999984106 Q gi|254780680|r 239 LYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQ-HQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLH 316 (430) Q Consensus 239 ~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~Rv-HQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~lp 316 (430) T Consensus 87 ~~~~~-~~~~~~p~r~~Y~g~vfR~e~pq-----~Gr~REf~Q~-G~EiiG~~~~----~aDaEvI~l~~~~l~~lgl~ 154 (388) T PRK12292 87 IAATR-LANRPGPLRLCYAGNVFRAQPRG-----LGRSREFLQS-GVELIGDAGI----EADAEVLSLLLDALKALGLP 154 (388) T ss_pred HHHHH-HHCCCCCEEEEEEEEEEEECCCC-----CCCCCEEEEC-CEEEECCCCH----HHHHHHHHHHHHHHHHCCCC T ss_conf 99973-10467876899852268705898-----9961023425-7553178888----99999999999999976998 |
|
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain | Back alignment and domain information |
---|
Probab=97.48 E-value=0.00066 Score=49.78 Aligned_cols=132 Identities=23% Similarity=0.351 Sum_probs=94.3 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHH----HCCEECCCCCCHHHHHHHHHCCCH Q ss_conf 8999999999998622320320212356202788986551422476776431----000231345411454453420595 Q gi|254780680|r 172 AHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTT----DGRWLIPTSEVSLTNLYSHEIIES 247 (430) Q Consensus 172 A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~----d~l~Li~TaEvpL~~~~~~~~l~~ 247 (430) T Consensus 2 ~~~r~~i~~~l~~~-f~~~Gy~~I~~P~lE~~d~~~~~~-~~~~~~~~~~f~D~~g~~l~LRpD~T~~iaR~~~~~~~-~ 78 (261) T cd00773 2 AALRRYIEDTLREV-FERYGYEEIDTPVFEYTELFLRKS-GDEVSKEMYRFKDKGGRDLALRPDLTAPVARAVAENLL-S 78 (261) T ss_pred HHHHHHHHHHHHHH-HHHCCCEEEECCCCCCHHHHCCCC-CCCCHHCEEEEECCCCCEEEECCCCCHHHHHHHHHHHC-C T ss_conf 68999999999999-998699786677645276752446-53102116999979999897678662799999997415-3 Q ss_pred HHHCCEEEEEECCCCCCCCCCCCCCCCEEEEE-EEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCH Q ss_conf 55042088532210788433554343212222-1020021212786501457898999999999984106 Q gi|254780680|r 248 KSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQH-QFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLH 316 (430) Q Consensus 248 ~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvH-QF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~lp 316 (430) T Consensus 79 ~~~p~r~~Y~g~VfR~~~~~~g-----~~rE~~Q-~G~EiiG~~----~~~ad~Eii~l~~~~l~~lg~~ 138 (261) T cd00773 79 LPLPLKLYYIGPVFRYERPQKG-----RYREFYQ-VGVEIIGSD----SPLADAEVIALAVEILEALGLK 138 (261) T ss_pred CCCCEEEEEECCEEEECCCCCC-----CCCCCCC-EEEEEECCC----CHHHHHHHHHHHHHHHHHCCCC T ss_conf 7888589997318997689999-----8443221-469997289----7588999999999999976998 |
HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain. |
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
---|
Probab=97.11 E-value=0.00069 Score=49.62 Aligned_cols=117 Identities=20% Similarity=0.391 Sum_probs=69.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHCCCHHH Q ss_conf 48899999999999862232032021235620278898655142247677643100023134541145445342059555 Q gi|254780680|r 170 HLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGRWLIPTSEVSLTNLYSHEIIESKS 249 (430) Q Consensus 170 ~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~d~l~Li~TaEvpL~~~~~~~~l~~~~ 249 (430) T Consensus 135 ~~~r~Rs~i~~~iR~f-l~~~gF~EVeTP~l~~~~~eGga~~f~~---~-~-~~~~~yL~~Spql-----y~q~li~-~G 202 (434) T PRK05159 135 AIFKIRSEVLRAFREF-LYEEGFTEIFTPKIVATGTEGGTELFPV---K-Y-FEKEAFLAQSPQL-----YKQMMMA-AG 202 (434) T ss_pred HHHHHHHHHHHHHHHH-HHHCCCEEEECCCCCCCCCCCCCCCCCE---E-E-CCCEEEECCCCHH-----HHHHHHH-CC T ss_conf 9999999999999999-9877919997874325678875565861---3-1-2753341468379-----9999876-35 Q ss_pred HCCEEEEEECCCCCCCCCCCCCCCCEEEEE--EEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 042088532210788433554343212222--1020021212786501457898999999999984 Q gi|254780680|r 250 LPLRFTTLAPSFRSEAGSAGRDTRGMLRQH--QFWKCELVSITREEDSFTEHERMLSCAEEILKRL 313 (430) Q Consensus 250 LPik~~~~s~cfR~EaGs~GkdtrGl~RvH--QF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L 313 (430) T Consensus 203 ~-~rvfeI~~~FR~E~~----~t~----RH~pEFT~lE~e~------af~d~~d~m~~~E~li~~i 253 (434) T PRK05159 203 F-ERVFEIGPAFRAEEH----NTT----RHLNEAISIDVEM------GFIDEEDVMDLLENLLKYV 253 (434) T ss_pred C-CCEEEECCCEECCCC----CCC----CCHHHHHHHHHHH------CCCCHHHHHHHHHHHHHHH T ss_conf 6-855996601023658----754----4535676566663------1068999999999999999 |
|
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated | Back alignment and domain information |
---|
Probab=97.10 E-value=0.0018 Score=46.59 Aligned_cols=121 Identities=25% Similarity=0.474 Sum_probs=64.8 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHH-CHHHHHHH-----------HHH---HHCCEECCCCCCH Q ss_conf 88999999999998622320320212356202788986551-42247677-----------643---1000231345411 Q gi|254780680|r 171 LAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQ-IPKFADDM-----------FCT---TDGRWLIPTSEVS 235 (430) Q Consensus 171 ~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~-lp~f~~~~-----------y~~---~d~l~Li~TaEvp 235 (430) T Consensus 134 ifr~RS~i~~~iR~~-l~~~~F~EVeTP~L~~~~~-eGaa~~F~v~~~~~~~~~~~~~~~~~~~~yf~~~~yL~~Spq-- 209 (462) T PRK03932 134 VMRVRNTLAQAIHEF-FQENGFVWVHTPIITASDC-EGAGELFRVTTLDLENLPRTDGKVDFSKDFFGKEAFLTVSGQ-- 209 (462) T ss_pred HHHHHHHHHHHHHHH-HHHCCCEEEECCCCCCCCC-CCCCCCEEECCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHH-- T ss_conf 999999999999999-9767967997886535687-645574042145434454334443311454277620265768-- Q ss_pred HHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 454453420595550420885322107884335543432122221020021212786501457898999999999984 Q gi|254780680|r 236 LTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRL 313 (430) Q Consensus 236 L~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L 313 (430) T Consensus 210 ---Lylq~li~--G~e-rVfeIg~~FRnE~~----~t~--RH~pEFT~lE~e~a------~~d~~d~m~l~E~li~~i 269 (462) T PRK03932 210 ---LYAEAYAM--ALS-KVYTFGPTFRAENS----NTR--RHLAEFWMIEPEMA------FADLEDNMDLAEDMLKYV 269 (462) T ss_pred ---HHHHHHHH--HCC-CEEEEEHHHHHCCC----CCC--CCCCCCEEEEEEEE------CCCHHHHHHHHHHHHHHH T ss_conf ---99999875--206-48997332320567----754--45430025553110------068999999999999999 |
|
>PRK09350 lysyl-tRNA synthetase; Provisional | Back alignment and domain information |
---|
Probab=96.85 E-value=0.0011 Score=48.15 Aligned_cols=118 Identities=17% Similarity=0.293 Sum_probs=65.9 Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHH----HHHHHCCEECCCCCCHHHHHHHHHCCCHH Q ss_conf 99999999999862232032021235620278898655142247677----64310002313454114544534205955 Q gi|254780680|r 173 HLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDM----FCTTDGRWLIPTSEVSLTNLYSHEIIESK 248 (430) Q Consensus 173 ~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~----y~~~d~l~Li~TaEvpL~~~~~~~~l~~~ 248 (430) T Consensus 17 ~~Rs~i~~~iR~f-f~~~gFlEVeTP~L~~~t~-~~~~~~~-f~~~~~~~~~~~~~~~yL~~SPq-----l~~k~l~~~- 87 (325) T PRK09350 17 LKRAAIIAEIRRF-FADRGVLEVETPAMSQATV-TDIHLVP-FETRFVGPGHSQGKTLWLMTSPE-----YHMKRLLAA- 87 (325) T ss_pred HHHHHHHHHHHHH-HHHCCCEEEECCCCCCCCC-CCCCCCC-EEEECCCCCCCCCCCEEEECCHH-----HHHHHHHHC- T ss_conf 9999999999999-9988968977984257788-7646762-22102565545676645507919-----999999866- Q ss_pred HHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 50420885322107884335543432122221020021212786501457898999999999984 Q gi|254780680|r 249 SLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRL 313 (430) Q Consensus 249 ~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L 313 (430) T Consensus 88 -G~~rvfqI~~~FR~E~-~-~--~---~H~pEFtmlE~~------~~~~d~~d~m~~~e~ll~~~ 138 (325) T PRK09350 88 -GSGPIFQLCRSFRNEE-A-G--R---YHNPEFTMLEWY------RPHYDMYRLMNEVDDLLQQV 138 (325) T ss_pred -CCCCEEEEEHHHCCCC-C-C--C---CCCCHHHHHHHH------HHCCCHHHHHHHHHHHHHHH T ss_conf -7885589611322899-9-8--7---657377888999------81548999999999999999 |
|
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain | Back alignment and domain information |
---|
Probab=96.78 E-value=0.0015 Score=47.03 Aligned_cols=116 Identities=19% Similarity=0.356 Sum_probs=60.9 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHH-HHHCCEECCCCCCHHHHHHHHHCCCHHHH Q ss_conf 89999999999986223203202123562027889865514224767764-31000231345411454453420595550 Q gi|254780680|r 172 AHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFC-TTDGRWLIPTSEVSLTNLYSHEIIESKSL 250 (430) Q Consensus 172 A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~-~~d~l~Li~TaEvpL~~~~~~~~l~~~~L 250 (430) T Consensus 8 ~~~Rs~i~~~iR~f-f~~~gF~Ev~TPiL-~-~~~~g~~~~~-f~~-~~~~~~~~~yL~qSpQ-----l~~q~l~~~-g~ 76 (329) T cd00775 8 FIVRSKIISYIRKF-LDDRGFLEVETPML-Q-PIAGGAAARP-FIT-HHNALDMDLYLRIAPE-----LYLKRLIVG-GF 76 (329) T ss_pred HHHHHHHHHHHHHH-HHHCCCEEEECCCC-C-CCCCCCCCCC-EEE-CCCCCCCCCCCCCCHH-----HHHHHHHHC-CC T ss_conf 99999999999999-99889889979865-5-6688756753-132-2446786723068989-----999999856-77 Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 42088532210788433554343212222102002121278650145789899999999998 Q gi|254780680|r 251 PLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKR 312 (430) Q Consensus 251 Pik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~ 312 (430) T Consensus 77 -~rvfqI~p~FR~E-~~-~--~---rHl~EFtmle~E~------~f~d~~dvm~~~E~li~~ 124 (329) T cd00775 77 -ERVYEIGRNFRNE-GI-D--L---THNPEFTMIEFYE------AYADYNDMMDLTEDLFSG 124 (329) T ss_pred -CCEEEEEECCCCC-CC-C--C---CCCCHHHHHHHHH------HCCCHHHHHHHHHHHHHH T ss_conf -7679981022479-99-9--7---7473456345777------447999999999999999 |
Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. |
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
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Probab=96.62 E-value=0.0031 Score=44.82 Aligned_cols=117 Identities=22% Similarity=0.384 Sum_probs=64.5 Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHCCCHHHHCC Q ss_conf 99999999999862232032021235620278898655142247677643100023134541145445342059555042 Q gi|254780680|r 173 HLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGRWLIPTSEVSLTNLYSHEIIESKSLPL 252 (430) Q Consensus 173 ~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~d~l~Li~TaEvpL~~~~~~~~l~~~~LPi 252 (430) T Consensus 172 ~~Rs~ii~~iR~~-l~~~gF~EVeTPiL--~~~~gGA~Arp-F~t~~n~l~~~~yL-~~SP----qLylk~l~v-gG~-e 240 (491) T PRK00484 172 RKRSKIISAIRRF-LDNRGFLEVETPML--QPIPGGAAARP-FITHHNALDIDLYL-RIAP----ELYLKRLIV-GGF-E 240 (491) T ss_pred HHHHHHHHHHHHH-HHHCCEEEEECCCC--CCCCCCCCCCC-CCCCCCCCCCCEEE-CCCH----HHHHHHHHH-CCC-H T ss_conf 9999999999999-98676899867877--66688756676-55644566855442-0687----898777876-272-0 Q ss_pred EEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 0885322107884335543432122221020021212786501457898999999999984 Q gi|254780680|r 253 RFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRL 313 (430) Q Consensus 253 k~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L 313 (430) T Consensus 241 rvfeI~r~FR~E-~~---~~r---H~pEFT~lE~e~------af~d~~dvm~l~E~li~~v 288 (491) T PRK00484 241 RVFEIGRNFRNE-GI---DTR---HNPEFTMIEFYQ------AYADYNDMMDLTEELIRHL 288 (491) T ss_pred HHEEHHHHHHCC-CC---CCC---CCCCEEEEEEEE------ECCCHHHHHHHHHHHHHHH T ss_conf 222248766257-55---434---184010213677------2479999999999999999 |
|
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain | Back alignment and domain information |
---|
Probab=96.55 E-value=0.0039 Score=44.01 Aligned_cols=114 Identities=25% Similarity=0.512 Sum_probs=64.1 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHCCCHHHH Q ss_conf 88999999999998622320320212356202788986551422476776431000231345411454453420595550 Q gi|254780680|r 171 LAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGRWLIPTSEVSLTNLYSHEIIESKSL 250 (430) Q Consensus 171 ~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~d~l~Li~TaEvpL~~~~~~~~l~~~~L 250 (430) T Consensus 23 ~l~~Rs~i~~~iR~f-l~~~gF~EVeTP~L~~~~~-eg~a~~--f~~~--~~~~~~yL~~Spe-----l~-Kqlli~-G~ 89 (322) T cd00776 23 IFRIRSEVLRAFREF-LRENGFTEVHTPKITSTDT-EGGAEL--FKVS--YFGKPAYLAQSPQ-----LY-KEMLIA-AL 89 (322) T ss_pred HHHHHHHHHHHHHHH-HHHCCCEEEECCCCCCCCC-CCCCCC--CCCC--CCCCCEEECCCHH-----HH-HHHHHC-CC T ss_conf 999999999999999-9988999997984007889-865466--7621--0587600154858-----89-999753-42 Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCEEEEE--EEEEEEEEECCCCCCHHH-HHHHHHHHHHHHHHH Q ss_conf 42088532210788433554343212222--102002121278650145-789899999999998 Q gi|254780680|r 251 PLRFTTLAPSFRSEAGSAGRDTRGMLRQH--QFWKCELVSITREEDSFT-EHERMLSCAEEILKR 312 (430) Q Consensus 251 Pik~~~~s~cfR~EaGs~GkdtrGl~RvH--QF~KVE~~~~~~pe~S~~-~~e~~~~~~~~i~~~ 312 (430) T Consensus 90 ~-rVfei~~~FR~E~~-~---t----~rH~pEFTmlE~------e~af~~d~~d~m~~~E~li~~ 139 (322) T cd00776 90 E-RVYEIGPVFRAEKS-N---T----RRHLSEFWMLEA------EMAFIEDYNEVMDLIEELIKY 139 (322) T ss_pred C-CEEEECCEEECCCC-C---C----CCCHHHHHHHHH------HHHHHCCHHHHHHHHHHHHHH T ss_conf 4-43887261407999-8---7----534788876525------552332899999999999999 |
Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. |
>PRK06462 asparagine synthetase A; Reviewed | Back alignment and domain information |
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Probab=96.37 E-value=0.004 Score=43.97 Aligned_cols=122 Identities=16% Similarity=0.193 Sum_probs=65.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHCCCHHH Q ss_conf 48899999999999862232032021235620278898655142247677643100023134541145445342059555 Q gi|254780680|r 170 HLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGRWLIPTSEVSLTNLYSHEIIESKS 249 (430) Q Consensus 170 ~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~d~l~Li~TaEvpL~~~~~~~~l~~~~ 249 (430) T Consensus 27 ~ifriRs~i~~~iR~f-~~~~gF~EV~TPiL~~~~~~~~~~~~~-~~~~--~~~~~~~L~~Spq-----l~lk~li~~g- 96 (332) T PRK06462 27 LVLKIQSSILRYTREF-LDGRGFVEVLPPIISPSTDPLMGDAKP-ASID--FYGVEYYLADSMI-----FHKQLMLRLL- 96 (332) T ss_pred HHHHHHHHHHHHHHHH-HHHCCCEEEECCCCCCCCCCCCCCCCC-CEEE--CCCCCEEECCCHH-----HHHHHHHHCC- T ss_conf 9999999999999999-988899998797236778876677601-0584--4898633145869-----9999998638- Q ss_pred HCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 042088532210788433554343212222102002121278650145789899999999998 Q gi|254780680|r 250 LPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKR 312 (430) Q Consensus 250 LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~ 312 (430) T Consensus 97 ~-~rVfeIg~~FR~E~~----d~~t~rHlpEFt~lE~y~------a~~d~~d~m~~~E~li~~ 148 (332) T PRK06462 97 K-GKVFYLSPNFRLEPV----DKDTGRHLYEFTQLDIEI------EGADLEEVMSLAEDLIKY 148 (332) T ss_pred C-CCEEEECCHHHCCCC----CCCCCCCCHHHHHHHHHH------HHCCHHHHHHHHHHHHHH T ss_conf 9-977997452316877----767776545777655878------738999999999999999 |
|
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain | Back alignment and domain information |
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Probab=96.33 E-value=0.0029 Score=45.02 Aligned_cols=113 Identities=23% Similarity=0.396 Sum_probs=57.1 Q ss_pred HHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHCCCHHHHCCEE Q ss_conf 99999999986223203202123562027889865514224767764310002313454114544534205955504208 Q gi|254780680|r 175 ERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGRWLIPTSEVSLTNLYSHEIIESKSLPLRF 254 (430) Q Consensus 175 e~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~ 254 (430) T Consensus 4 Rs~i~~~iR~f-f~~~gflEV~TPiL~~~~-~ega~~---f~~~~~~~~~~~~~L~~Spe----l~~k~l~~~-g~-~rv 72 (280) T cd00777 4 RSRVIKAIRNF-LDEQGFVEIETPILTKST-PEGARD---FLVPSRLHPGKFYALPQSPQ----LFKQLLMVS-GF-DRY 72 (280) T ss_pred HHHHHHHHHHH-HHHCCCEEEECCCCCCCC-CCCCCC---CEECCCCCCCCCCCCCCCHH----HHHHHHHHC-CC-CCC T ss_conf 99999999999-998898998798106878-776766---44244168876036887989----999999856-87-775 Q ss_pred EEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 853221078843355434321222210200212127865014578989999999999 Q gi|254780680|r 255 TTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILK 311 (430) Q Consensus 255 ~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~ 311 (430) T Consensus 73 f~i~~~FR~E~-~---~~~---h~~EFtmLE~e~------~~~~~~d~m~~~E~li~ 116 (280) T cd00777 73 FQIARCFRDED-L---RAD---RQPEFTQIDIEM------SFVDQEDIMSLIEGLLK 116 (280) T ss_pred EEEECEECCCC-C---CCC---CCHHHHHHHHHC------CCCCHHHHHHHHHHHHH T ss_conf 79845174788-8---876---634776234422------68889999999999999 |
Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain. |
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional | Back alignment and domain information |
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Probab=95.90 E-value=0.098 Score=33.65 Aligned_cols=112 Identities=21% Similarity=0.332 Sum_probs=59.5 Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHC--HH-HHHHHHHHHHCCEECCCCCCHHHHHHHHHCCCHHH Q ss_conf 9999999999986223203202123562027889865514--22-47677643100023134541145445342059555 Q gi|254780680|r 173 HLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQI--PK-FADDMFCTTDGRWLIPTSEVSLTNLYSHEIIESKS 249 (430) Q Consensus 173 ~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~l--p~-f~~~~y~~~d~l~Li~TaEvpL~~~~~~~~l~~~~ 249 (430) T Consensus 157 ~~Rskv~~~iR~~-l~~~gF~EVETP~L~~s-tpEGArdflvPsr~~------~~~fyaLpQSPQ----ly-KQlLMvgG 223 (706) T PRK12820 157 AKRHRIIKCARDF-LDSRGFLEIETPILTKS-TPEGARDYLVPSRIH------PKEFYALPQSPQ----LF-KQLLMIAG 223 (706) T ss_pred HHHHHHHHHHHHH-HHHCCCEEEECCEECCC-CCCCCCCCCCCEECC------CCCEECCCCCHH----HH-HHHHHHCC T ss_conf 9999999999999-98779889668704456-753245750024458------876500566829----99-99998628 Q ss_pred HCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEE-ECCCCCCHHHHHHHHHHH Q ss_conf 04208853221078843355434321222210200212-127865014578989999 Q gi|254780680|r 250 LPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELV-SITREEDSFTEHERMLSC 305 (430) Q Consensus 250 LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~-~~~~pe~S~~~~e~~~~~ 305 (430) T Consensus 224 ~-dRyFqIarcFRdEd~r-------~dRqPEFTqlDiEmSF~d~edvm~l~E~li~~ 272 (706) T PRK12820 224 F-ERYFQLARCFRDEDLR-------PNRQPEFTQLDIEASFIDEEFIFELIEELTAR 272 (706) T ss_pred C-CEEEEEEEEECCCCCC-------CCCCCCEEEEEEEHHCCCHHHHHHHHHHHHHH T ss_conf 6-6179960011289999-------88798340687421348999999999999999 |
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>PRK12445 lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
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Probab=95.23 E-value=0.015 Score=39.71 Aligned_cols=117 Identities=19% Similarity=0.330 Sum_probs=65.3 Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHCCCHHHHCC Q ss_conf 99999999999862232032021235620278898655142247677643100023134541145445342059555042 Q gi|254780680|r 173 HLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGRWLIPTSEVSLTNLYSHEIIESKSLPL 252 (430) Q Consensus 173 ~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~d~l~Li~TaEvpL~~~~~~~~l~~~~LPi 252 (430) T Consensus 185 ~~Rs~ii~~iR~~-l~~~gF~EVeTPil--~~~~gGa~Arp-f~t~~~~~~~~~yL~qSPQ-----Lykk~Lmv-gGf-d 253 (505) T PRK12445 185 VVRSKILAAIRQF-MVARGFMEVETPMM--QVIPGGASARP-FITHHNALDLDMYLRIAPE-----LYLKRLVV-GGF-E 253 (505) T ss_pred HHHHHHHHHHHHH-HHHCCCEEEECCCC--CCCCCCCCCCE-EEECCCCCCCCEEECCCCH-----HHHHHHHH-CCC-C T ss_conf 9999999999999-99779389978875--55458766610-3304667886743416939-----99999985-797-4 Q ss_pred EEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 0885322107884335543432122221020021212786501457898999999999984 Q gi|254780680|r 253 RFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRL 313 (430) Q Consensus 253 k~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L 313 (430) T Consensus 254 RvfeI~r~FRnE----~~~~~---H~PEFT~lE~e------~af~d~~dvm~l~E~li~~i 301 (505) T PRK12445 254 RVFEINRNFRNE----GISVR---HNPEFTMMELY------MAYADYHDLIELTESLFRTL 301 (505) T ss_pred CEEEHHHHHHCC----CCCCC---CCHHHHHHHHH------HHCCCHHHHHHHHHHHHHHH T ss_conf 457627876078----88866---54445435687------63278989999999999999 |
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>pfam00152 tRNA-synt_2 tRNA synthetases class II (D, K and N) | Back alignment and domain information |
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Probab=95.20 E-value=0.022 Score=38.41 Aligned_cols=117 Identities=22% Similarity=0.402 Sum_probs=63.6 Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHCCCHHHHCC Q ss_conf 99999999999862232032021235620278898655142247677643100023134541145445342059555042 Q gi|254780680|r 173 HLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGRWLIPTSEVSLTNLYSHEIIESKSLPL 252 (430) Q Consensus 173 ~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~d~l~Li~TaEvpL~~~~~~~~l~~~~LPi 252 (430) T Consensus 23 ~~Rs~i~~~iR~f-f~~~~f~EV~TP~L~~~~~-e~~a~--~F~~~~~~-~~~~yL~~Spe-----l~~k~ll~~g--~~ 90 (341) T pfam00152 23 KLRSKIIRAIREF-LDERGFLEVETPILTKSTP-EGGAR--DFLVPKFY-AKEAYLPQSPQ-----LYKQLLMVAG--FD 90 (341) T ss_pred HHHHHHHHHHHHH-HHHCCCEEEECCCCCCCCC-CCCCC--EEEECCCC-CCCEEECCCHH-----HHHHHHHHCC--CC T ss_conf 9999999999999-9988989987982005589-87776--64502678-98234054889-----9999998658--87 Q ss_pred EEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 0885322107884335543432122221020021212786501457898999999999984 Q gi|254780680|r 253 RFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRL 313 (430) Q Consensus 253 k~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L 313 (430) T Consensus 91 rVfei~~~FR~E~-~~t~--r---H~~EFtmlE~y~a------~~d~~d~m~~~E~li~~i 139 (341) T pfam00152 91 RVFQIAPCFRDED-LRTD--R---HPPEFTQLDLEMS------FVDYEDVMDLTEDLIKYV 139 (341) T ss_pred CCEEEECHHCCCC-CCCC--C---CCHHHHHHHHHHH------CCCHHHHHHHHHHHHHHH T ss_conf 6379723202798-9886--5---5077887767553------599999999999999999 |
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>PRK02983 lysS lysyl-tRNA synthetase; Provisional | Back alignment and domain information |
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Probab=95.11 E-value=0.018 Score=39.16 Aligned_cols=117 Identities=19% Similarity=0.255 Sum_probs=67.5 Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHCCCHHHHCC Q ss_conf 99999999999862232032021235620278898655142247677643100023134541145445342059555042 Q gi|254780680|r 173 HLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGRWLIPTSEVSLTNLYSHEIIESKSLPL 252 (430) Q Consensus 173 ~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~d~l~Li~TaEvpL~~~~~~~~l~~~~LPi 252 (430) T Consensus 777 ~~RS~Vi~aiR~~-L~~~GFlEVETPiLq~--~~GGA~ARP-FlThsna~d~~~YL-riAP----ELflKRLmVGG-f-e 845 (1099) T PRK02983 777 RARSAVLRAVRET-LVAKGFLEVETPILQQ--IHGGANARP-FLTHINAYDLDLYL-RIAP----ELYLKRLCVGG-V-E 845 (1099) T ss_pred HHHHHHHHHHHHH-HHHCCCEEEECCCCCC--CCCCCCCCC-CCCCCCCCCCCCEE-ECCH----HHHHHHHHHCC-C-C T ss_conf 9999999999999-9878988955754677--888756785-30103367866145-1480----89999998648-6-3 Q ss_pred EEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 0885322107884335543432122221020021212786501457898999999999984 Q gi|254780680|r 253 RFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRL 313 (430) Q Consensus 253 k~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L 313 (430) T Consensus 846 RVFEI~RcFRNEg----lrad---HnPEFTmLE~Y------~Ay~Dyedmm~ltEeLi~~~ 893 (1099) T PRK02983 846 RVFELGRAFRNEG----VDFS---HNPEFTLLEAY------QAHADYLVMRDLCRELIQNA 893 (1099) T ss_pred CCEEECCCCCCCC----CCCC---CCCCHHHHHHH------HHHCCHHHHHHHHHHHHHHH T ss_conf 1134325446799----9987---49407999999------98478999999999999999 |
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>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism] | Back alignment and domain information |
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Probab=92.03 E-value=0.66 Score=27.50 Aligned_cols=139 Identities=24% Similarity=0.355 Sum_probs=93.7 Q ss_pred HCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHH-HHCHHHHHHHHHHHH----CCEECCCCC Q ss_conf 216753010564889999999999986223203202123562027889865-514224767764310----002313454 Q gi|254780680|r 159 LSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGT-GQIPKFADDMFCTTD----GRWLIPTSE 233 (430) Q Consensus 159 vsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gt-G~lp~f~~~~y~~~d----~l~Li~TaE 233 (430) T Consensus 6 p~g~rd-~Lp~e~~~~~~i~~~-l~~~-f~~~Gy~~v~tP~lE~~d~~l~~~g~--~l~~~~f~l~d~~g~~l~LRpD~T 80 (390) T COG3705 6 PEGIRD-VLPLEARRKEEIRDQ-LLAL-FRAWGYERVETPTLEPADPLLDGAGE--DLRRRLFKLEDETGGRLGLRPDFT 80 (390) T ss_pred CCCCHH-CCHHHHHHHHHHHHH-HHHH-HHHHCCCCCCCCCCCHHHHHHHCCCH--HHHHHHEEEECCCCCEEEECCCCC T ss_conf 875201-063677647999999-9999-99808740466313402665402225--555220687657897688354330 Q ss_pred CHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEE--EEEEECCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 11454453420595550420885322107884335543432122221020--0212127865014578989999999999 Q gi|254780680|r 234 VSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWK--CELVSITREEDSFTEHERMLSCAEEILK 311 (430) Q Consensus 234 vpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~K--VE~~~~~~pe~S~~~~e~~~~~~~~i~~ 311 (430) T Consensus 81 ~pVaR~~~~~~~~---~P~Rl~Y~G~Vfr~~~~~~g~-------~~Ef~QaGiEllG~~----~~~ADaEvi~la~~~L~ 146 (390) T COG3705 81 IPVARIHATLLAG---TPLRLSYAGKVFRAREGRHGR-------RAEFLQAGIELLGDD----SAAADAEVIALALAALK 146 (390) T ss_pred HHHHHHHHHHCCC---CCCEEEECCHHHHCCHHCCCC-------CCCHHHHHHHHHCCC----CCHHHHHHHHHHHHHHH T ss_conf 8999999982378---871466401454020102676-------420455336773787----20002899999999999 Q ss_pred HHCCH Q ss_conf 84106 Q gi|254780680|r 312 RLDLH 316 (430) Q Consensus 312 ~L~lp 316 (430) T Consensus 147 ~~gl~ 151 (390) T COG3705 147 ALGLA 151 (390) T ss_pred HCCCC T ss_conf 74886 |
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>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
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Probab=96.54 E-value=0.0032 Score=44.70 Aligned_cols=139 Identities=20% Similarity=0.337 Sum_probs=76.4 Q ss_pred CCCCCCCCCCCHHHHCC--CCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHH Q ss_conf 66566621122022117--3100011222167530105648899999999999862232032021235620278898655 Q gi|254780680|r 133 SAIHLSREHFEIGEALG--LMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTG 210 (430) Q Consensus 133 ~f~f~~k~H~elge~l~--liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG 210 (430) T Consensus 103 ~~Pi~~~~~~~~e~lld~rhL~lR~~----------~~~Av~kirs~i~~a~~ef-f~~~gF~eV~tP~i~~~~~EGg~e 171 (435) T COG0017 103 PYPIDKKEHSELETLLDNRHLDLRTP----------KIQAVFKIRSSILRAIREF-FYENGFTEVHTPIITASATEGGGE 171 (435) T ss_pred CCCCCCCCCCCHHHHHHCHHEECCCC----------CHHHHHHHHHHHHHHHHHH-HHHCCCEEECCCEEECCCCCCCCE T ss_conf 77768645557888874403020462----------0377894999999999999-975895896594685347899850 Q ss_pred HCH--HHHHHHHHHHH-CCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEE- Q ss_conf 142--24767764310-00231345411454453420595550420885322107884335543432122221020021- Q gi|254780680|r 211 QIP--KFADDMFCTTD-GRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCEL- 286 (430) Q Consensus 211 ~lp--~f~~~~y~~~d-~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~- 286 (430) T Consensus 172 lF~v~yf~~~a~LtqS~QLyk----e~~~~a-----------l-~rVf~igP~FRAE~s----~T~R--HL~EF~~ld~E 229 (435) T COG0017 172 LFKVDYFDKEAYLTQSPQLYK----EALAAA-----------L-ERVFTIGPTFRAEKS----NTRR--HLSEFWMLDPE 229 (435) T ss_pred EEEEEECCCCEEEECCHHHHH----HHHHHH-----------H-CCEEEECCCEECCCC----CCCC--HHHHHHEECCE T ss_conf 577750685667714788999----999998-----------5-764895672554778----9700--36667330211 Q ss_pred EECCCCCCHHHHHHHHHH Q ss_conf 212786501457898999 Q gi|254780680|r 287 VSITREEDSFTEHERMLS 304 (430) Q Consensus 287 ~~~~~pe~S~~~~e~~~~ 304 (430) T Consensus 230 maf~~~~d~m~l~E~~i~ 247 (435) T COG0017 230 MAFADLNDVMDLAEELIK 247 (435) T ss_pred ECCCCHHHHHHHHHHHHH T ss_conf 136768889999999999 |
|
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed | Back alignment and domain information |
---|
Probab=96.25 E-value=0.0079 Score=41.77 Aligned_cols=97 Identities=16% Similarity=0.270 Sum_probs=64.6 Q ss_pred HCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCH-HHHCC Q ss_conf 20595550420885322107884335543432122221020021212786501457898999999999984106-75303 Q gi|254780680|r 243 EIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLH-YRVVS 321 (430) Q Consensus 243 ~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~lp-yRvv~ 321 (430) T Consensus 198 ~l~~k~~~P~klFSIDRcFRrEq~e---D~~hL~~yhs---ascvv~-~e---dVn~d~gkav~~~lL~~fGF~~frFrP 267 (527) T PRK06253 198 ALWERKPLPFKLFSIDRCFRREQKE---DASRLMTYHS---ASCVVA-GE---DVTVDDGKAVAEGLLSQFGFTNFRFRP 267 (527) T ss_pred HHHHCCCCCEEEEEEEHEEECHHHC---CHHHHHHHHE---EEEEEE-CC---CCCHHHHHHHHHHHHHHHCCCEEEECC T ss_conf 9972679983687410102200002---4556345443---226997-59---866777799999999970975378434 Q ss_pred --------CCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCC Q ss_conf --------780117844340241011010048332375310210 Q gi|254780680|r 322 --------LCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCG 357 (430) Q Consensus 322 --------~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~ 357 (430) T Consensus 268 dek~skYY~P~T--------qtEVy~yhp~~~gWvEvatfGIys 303 (527) T PRK06253 268 DEKRSKYYTPDT--------QTEVYAYHPKLDGWVEVATFGIYS 303 (527) T ss_pred CCCCCCCCCCCC--------CEEEEEECCCCCCEEEEECCCCCC T ss_conf 423566537886--------327999636678628973142567 |
|
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit; InterPro: IPR004529 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
---|
Probab=92.95 E-value=0.25 Score=30.67 Aligned_cols=107 Identities=10% Similarity=0.124 Sum_probs=75.2 Q ss_pred HHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHH-HCCHHHHCCCCCHH Q ss_conf 55042088532210788433554343212222102002121278650145789899999999998-41067530378011 Q gi|254780680|r 248 KSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKR-LDLHYRVVSLCTGD 326 (430) Q Consensus 248 ~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~-L~lpyRvv~~~sgd 326 (430) T Consensus 202 ~~pp~~~~~~~~~~r~~~~d~-------~h~~~f~~~~g~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~p~~fp~t~ 274 (362) T TIGR00468 202 KNPPIRIFCPGRVFRRDTVDA-------THLPEFHQLEGLVVDKNVSFTNLKGLLEEFLKKLFGEDTEVRFRPSYFPFTE 274 (362) T ss_pred CCCCEEEEECCHHHCCCCCCC-------CCCCHHHHEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCC T ss_conf 788625764101110233331-------0141022100235415664678899999999974132212023103366555 Q ss_pred CCCHHHEEEEEEEECCC-CC--------CEEEEEEECCCCCHHHHHCCCE Q ss_conf 78443402410110100-48--------3323753102100764532684 Q gi|254780680|r 327 LGFSACKTYDLEVWLAG-QN--------LYREISSCSTCGNFQSRRMNSR 367 (430) Q Consensus 327 lg~~a~~~~DiE~w~P~-~~--------~y~Ev~S~Snc~D~QsrRl~ir 367 (430) T Consensus 275 p~------~e~~~~~~~c~~gc~~c~~~~W~e~~g~g~~~p~~~~~~g~~ 318 (362) T TIGR00468 275 PS------AEVDVYCPECGKGCSVCKGTGWLELLGAGIFRPEVLEPLGID 318 (362) T ss_pred CC------CCEEEEEHHHCCCCHHHCCCCEEEEECCCCCCHHHHHHCCCC T ss_conf 55------302442000013100101465035404553242355423787 |
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases . This family describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this family. ; GO: 0000166 nucleotide binding, 0004826 phenylalanine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006432 phenylalanyl-tRNA aminoacylation, 0005737 cytoplasm. |
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain | Back alignment and domain information |
---|
Probab=96.23 E-value=0.0042 Score=43.83 Aligned_cols=95 Identities=19% Similarity=0.242 Sum_probs=55.1 Q ss_pred HHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHCCCHHHHCCEEE Q ss_conf 99999999862232032021235620278898655142247677643100023134541145445342059555042088 Q gi|254780680|r 176 RALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGRWLIPTSEVSLTNLYSHEIIESKSLPLRFT 255 (430) Q Consensus 176 ~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~ 255 (430) T Consensus 5 s~i~~~iR~ff-~~~~f~EV~TP~l~~~~~~~~---~~~f~~~~~~~~~~~~L~~Spel~~-----k~ll~~-g~-~~if 73 (269) T cd00669 5 SKIIKAIRDFM-DDRGFLEVETPMLQKITGGAG---ARPFLVKYNALGLDYYLRISPQLFK-----KRLMVG-GL-DRVF 73 (269) T ss_pred HHHHHHHHHHH-HHCCCEEEECCEEECCCCCCC---CCEEEEECCCCCCEEEECCCHHHHH-----HHHHHC-CC-CCEE T ss_conf 99999999999-988989987985305789876---7425731378994077343889999-----999865-88-8679 Q ss_pred EEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEE Q ss_conf 532210788433554343212222102002121 Q gi|254780680|r 256 TLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVS 288 (430) Q Consensus 256 ~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~ 288 (430) T Consensus 74 ~i~~~FR~e-~~-~--~r---H~~EFtmlE~y~ 99 (269) T cd00669 74 EINRNFRNE-DL-R--AR---HQPEFTMMDLEM 99 (269) T ss_pred EEECCCCCC-CC-C--CC---CCHHHHHHHHHC T ss_conf 984621078-98-6--55---434877578751 |
This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. |
>KOG0555 consensus | Back alignment and domain information |
---|
Probab=95.26 E-value=0.032 Score=37.30 Aligned_cols=102 Identities=28% Similarity=0.389 Sum_probs=67.3 Q ss_pred CCCEEECCHHHHHH----HHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHC--HHHHHHHHHHHH-CCEECCCCCC Q ss_conf 75301056488999----9999999986223203202123562027889865514--224767764310-0023134541 Q gi|254780680|r 162 ARFSVLTGHLAHLE----RALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQI--PKFADDMFCTTD-GRWLIPTSEV 234 (430) Q Consensus 162 srF~~Lkg~~A~Le----~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~l--p~f~~~~y~~~d-~l~Li~TaEv 234 (430) T Consensus 229 nrHl~iRge~~s~vLK~Ra~~lr~~Rd-~y~~~~ytEVtPPtmVQTQVEGGsTLFkldYyGEeAyLTQSSQLYL----Et 303 (545) T KOG0555 229 NRHLVIRGENASKVLKARAALLRAMRD-HYFERGYTEVTPPTMVQTQVEGGSTLFKLDYYGEEAYLTQSSQLYL----ET 303 (545) T ss_pred CCEEEEECHHHHHHHHHHHHHHHHHHH-HHHHCCCEECCCCCEEEEEECCCCEEEEECCCCCHHHCCCHHHHHH----HH T ss_conf 552688410478999999999999998-8874484245797157887517604873113574033022358889----87 Q ss_pred HHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEE Q ss_conf 1454453420595550420885322107884335543432122221020021 Q gi|254780680|r 235 SLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCEL 286 (430) Q Consensus 235 pL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~ 286 (430) T Consensus 304 clpAlg------------dvy~I~~SyRAEkS-r---TRR--HLsEytHVEa 337 (545) T KOG0555 304 CLPALG------------DVYCIQQSYRAEKS-R---TRR--HLSEYTHVEA 337 (545) T ss_pred HHHHCC------------CEEEECHHHHHHHH-H---HHH--HHHHHEEEEE T ss_conf 655207------------62673275665566-6---666--5533111023 |
|
>KOG2298 consensus | Back alignment and domain information |
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Probab=95.03 E-value=0.035 Score=36.93 Aligned_cols=46 Identities=24% Similarity=0.377 Sum_probs=37.7 Q ss_pred CCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCC Q ss_conf 59555042088532210788433554343212222102002121278650 Q gi|254780680|r 245 IESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREED 294 (430) Q Consensus 245 l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~ 294 (430) T Consensus 203 ~N~~KlPFA~AqiG~~fRNEISp----RsGLlRvrEF~maEIEHFvdP~~ 248 (599) T KOG2298 203 FNQGKLPFASAQIGKSFRNEISP----RSGLLRVREFTMAEIEHFVDPLL 248 (599) T ss_pred HCCCCCCCHHHHHCHHHHHCCCC----CCCCEEEEEEEHHHHHCCCCCCC T ss_conf 52887763488746576513375----55743678754677653489777 |
|
>PRK00226 greA transcription elongation factor GreA; Reviewed | Back alignment and domain information |
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Probab=93.57 E-value=0.78 Score=26.96 Aligned_cols=101 Identities=18% Similarity=0.177 Sum_probs=62.0 Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCCCH Q ss_conf 999999999999999-9999999999986449987999999999999988644466666778887744-31002258811 Q gi|254780680|r 35 EKNRILIKKIEDIRA-RRNSNSAQIGQAIAEGNLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKKL-ISCIPNVPLEE 112 (430) Q Consensus 35 ~~rr~l~~e~e~Lra-erN~lSKeIg~~k~~~~~~~~~~Lk~e~~~Lk~eik~le~~~~~le~el~~l-ll~IPNi~~~~ 112 (430) T Consensus 10 eg~~~L~~El~~L~~~~r~~i~~~i~~Ar~~GDlsENaeY----~aAke~q~~~e~rI~~Le~~L~~A~iid~~~~~~~~ 85 (157) T PRK00226 10 EGYEKLEEELEELKTVERPEIIEAIAEAREHGDLSENAEY----HAAKEEQGFIEGRIRELEDKLSNAEVIDPTKPSSGK 85 (157) T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC T ss_conf 9999999999999872368999999999986996405769----999999999999999999999850145866577884 Q ss_pred HHHCCCCCCCEEEEEECCCCCCCCCCCCCCC Q ss_conf 2211355540242000156566566621122 Q gi|254780680|r 113 VPIGTSANENILIRSVGKKPSAIHLSREHFE 143 (430) Q Consensus 113 VP~G~de~dNv~i~~~G~~~~f~f~~k~H~e 143 (430) T Consensus 86 V~~Gs~----V~l~d~~~g~~~~y~iVG~~E 112 (157) T PRK00226 86 VKFGAT----VTIYDLDTDEEETYQIVGDDE 112 (157) T ss_pred EECCCE----EEEEECCCCCEEEEEEECCCC T ss_conf 206758----999985899679999913322 |
|
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
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Probab=92.34 E-value=1.1 Score=25.74 Aligned_cols=72 Identities=18% Similarity=0.238 Sum_probs=51.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 99999999999999999999999999999999864499879999999999999886444666667788877443100 Q gi|254780680|r 29 YILSLDEKNRILIKKIEDIRARRNSNSAQIGQAIAEGNLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLISCI 105 (430) Q Consensus 29 ~il~Ld~~rr~l~~e~e~LraerN~lSKeIg~~k~~~~~~~~~~Lk~e~~~Lk~eik~le~~~~~le~el~~lll~I 105 (430) T Consensus 39 ~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~-----~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAm 110 (265) T COG3883 39 KLSELQKEKKNIQNEIESLDNQIEEIQSKIDEL-----QKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAM 110 (265) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999989999999999999999988878-----988888999999999899999988999999999999999 |
|
>pfam03961 DUF342 Protein of unknown function (DUF342) | Back alignment and domain information |
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Probab=92.06 E-value=1.2 Score=25.67 Aligned_cols=28 Identities=21% Similarity=0.344 Sum_probs=16.8 Q ss_pred CCEEHHHHHCCHHHHHHHHHCHHHHHHHH Q ss_conf 20212356202788986551422476776 Q gi|254780680|r 192 YTEVSAPLLVRDEAMYGTGQIPKFADDMF 220 (430) Q Consensus 192 y~~v~~P~lv~~~~~~gtG~lp~f~~~~y 220 (430) T Consensus 174 ~i~V~~vl~v~gdVd~~TGNI-~F~G~V~ 201 (450) T pfam03961 174 GISVDDVLEIKGDVDLSTGNI-DFKGSVI 201 (450) T ss_pred EEEEEEEEEECCCCCCCCCCE-EEEEEEE T ss_conf 899999899768778773446-7777799 |
This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length. |
>TIGR00409 proS_fam_II prolyl-tRNA synthetase; InterPro: IPR004500 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
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Probab=91.27 E-value=0.52 Score=28.25 Aligned_cols=70 Identities=24% Similarity=0.369 Sum_probs=60.1 Q ss_pred CCEEEEEEECCCCCHHHHHCCCEEECCCCCCCC-EEEEECCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCC Q ss_conf 833237531021007645326847338998410-1042004322899999999883468998386582223101 Q gi|254780680|r 345 NLYREISSCSTCGNFQSRRMNSRYRDPNSKSLK-FTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYM 417 (430) Q Consensus 345 ~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~~~-~~htlNgt~~A~~R~l~ailEn~q~~dg~i~iP~~L~pym 417 (430) T Consensus 449 ~~gIEVGHIF~LG~kYS~al~A~f~de~Gk~-~t~~~M-GCYGIGVSRl~~Ai~Eq~~D~~G-~~WP~~~APy~ 519 (620) T TIGR00409 449 AKGIEVGHIFKLGTKYSKALKATFLDENGKE-QTFLTM-GCYGIGVSRLVSAIAEQHYDERG-IIWPKAIAPYD 519 (620) T ss_pred CCCCEEEEEECCCHHHHHHHCCEEECCCCCC-CCEEEC-CCCCCHHHHHHHHHHHHCCCCCC-CCCCCCCCCCE T ss_conf 0562341133022033333065564668850-252560-55571389999999985058786-36764538814 |
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Prolyl-tRNA synthetase (6.1.1.15 from EC) exists in two forms, which are loosely related. The first form, is present in the majority of eubacteria species. The second one, present in some eubacteria, is essentially present in archaea and eukaryota. Prolyl-tRNA synthetase belongs to class IIa. This family includes the enzyme from Escherichia coli that contains all three of the conserved consensus motifs characteristic of class II aminoacyl-tRNA synthetases and the enzyme from the spirochete Borrelia burgdorferi.; GO: 0000166 nucleotide binding, 0004827 proline-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006433 prolyl-tRNA aminoacylation, 0005737 cytoplasm. |
>PRK11637 hypothetical protein; Provisional | Back alignment and domain information |
---|
Probab=90.29 E-value=1.8 Score=24.30 Aligned_cols=34 Identities=15% Similarity=0.162 Sum_probs=16.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999999999999998 Q gi|254780680|r 28 EYILSLDEKNRILIKKIEDIRARRNSNSAQIGQA 61 (430) Q Consensus 28 d~il~Ld~~rr~l~~e~e~LraerN~lSKeIg~~ 61 (430) T Consensus 23 ~~L~~i~~~I~~~~~~l~~~~~~~~~l~~~L~~~ 56 (404) T PRK11637 23 DQLKSIQADIAAKERAVRQQQQQRASLLAQLKKQ 56 (404) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999999999999999999 |
|
Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
Identity | Alignment graph | Length | Definition | E-value |
Target | 430 | seryl-tRNA synthetase [Candidatus Liberibacter asiaticu | ||
2dq3_A | 425 | Crystal Structure Of Aq_298 Length = 425 | 1e-120 | |
2dq0_A | 455 | Crystal Structure Of Seryl-Trna Synthetase From Pyr | 1e-101 | |
1sry_A | 421 | Refined Crystal Structure Of The Seryl-Trna Synthet | 1e-80 | |
3lsq_A | 484 | Trypanosoma Brucei Seryl-Trna Synthetase Length = 4 | 5e-78 | |
1wle_A | 501 | Crystal Structure Of Mammalian Mitochondrial Seryl- | 1e-73 | |
3err_A | 536 | Microtubule Binding Domain From Mouse Cytoplasmic D | 3e-67 | |
1qf6_A | 642 | Structure Of E. Coli Threonyl-Trna Synthetase Compl | 3e-06 | |
1evk_A | 401 | Crystal Structure Of A Truncated Form Of Threonyl-T | 1e-05 |
>gi|149241134|pdb|2DQ3|A Chain A, Crystal Structure Of Aq_298 Length = 425 | Back alignment and structure |
Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 203/428 (47%), Positives = 280/428 (65%), Gaps = 7/428 (1%) Query: 2 LDIQWIRQNPEHLDIALKKRHLEP--QSEYILSLDEKNRILIKKIEDIRARRNSNSAQIG 59 +DI IR+ P+++ L R E + +L LD++ R +IK++E +R+ RN S +IG Sbjct: 2 IDINLIREKPDYVKERLATRDKELVSLVDKVLELDKRRREIIKRLEALRSERNKLSKEIG 61 Query: 60 QAIAEGNLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTSA 119 + EG + ++N LKE++ LE+E +V LK + IPN+P VP+G Sbjct: 62 KLKREGKDT--TEIQNRVKELKEEIDRLEEELRKVEEELKNTLLWIPNLPHPSVPVGEDE 119 Query: 120 NENILIRSVGKKPSAIHLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALG 179 +N+ +R G+ + H+EIGE LG++DF R KLSG+RF+V+ G A LERAL Sbjct: 120 KDNVEVRRWGEPRKFDFEPKPHWEIGERLGILDFKRGAKLSGSRFTVIAGWGARLERALI 179 Query: 180 QFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMF-CTTDGRWLIPTSEVSLTN 238 F +DLHT + GY E+ P LV+ E + GTGQ+PKF +D++ C D +LIPT+EV LTN Sbjct: 180 NFXLDLHT-KKGYKEICPPHLVKPEILIGTGQLPKFEEDLYKCERDNLYLIPTAEVPLTN 238 Query: 239 LYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTE 298 LY EI++ ++LP+ T P +R EAG+ G+D RG++RQHQF K ELV I + S+ E Sbjct: 239 LYREEILKEENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVKIVHPDTSYDE 298 Query: 299 HERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGN 358 E+++ AEE+L+ L L YRVV LCTGDLGFSA KTYD+EVW QN YREISSCS C + Sbjct: 299 LEKLVKDAEEVLQLLGLPYRVVELCTGDLGFSAAKTYDIEVWFPSQNKYREISSCSNCED 358 Query: 359 FQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYMN 418 FQ+RR N+R++D + +F HTLNGSG+AVGR L AILENY DGSV +P VLR Y+ Sbjct: 359 FQARRXNTRFKDSKTGKNRFVHTLNGSGLAVGRTLAAILENYQQEDGSVVVPEVLRDYV- 417 Query: 419 NLAVIKKE 426 VI+ E Sbjct: 418 GTDVIRPE 425 |
gi|149241121|pdb|2DQ0|A Chain A, Crystal Structure Of Seryl-Trna Synthetase From Pyrococcus Horikoshii Complexed With A Seryl-Adenylate Analog Length = 455 | Back alignment and structure |
Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 160/450 (35%), Positives = 250/450 (55%), Gaps = 27/450 (6%) Query: 1 MLDIQWIRQNPEHLDIALKKRHLEPQS---EYILSLDEKNRILIKKIEDIRARRNSNSAQ 57 MLDI+ IR+NPE + L KR + + IL LD + R +K+I +R RN + + Sbjct: 1 MLDIKLIRENPELVKNDLIKRGELEKVKWVDEILKLDTEWRTKLKEINRLRHERNKIAVE 60 Query: 58 IGQAIAEGNLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGT 117 IG+ +G VD L ++ + +++ LE E E+ + + +PN+ VP+G Sbjct: 61 IGKRRKKGEP--VDELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPNITHPSVPVGK 118 Query: 118 SANENILIRSVGKKPSA--------------------IHLSREHFEIGEALGLMDFDRAT 157 N+N+ IR GK + H ++ E LG DF RA Sbjct: 119 DENDNVPIRFWGKARVWKGHLERFLEQSQGKMEYEILEWKPKLHVDLLEILGGADFARAA 178 Query: 158 KLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFAD 217 K+SG+RF L + L+ AL +F +D E G+T V P +VR G+ F D Sbjct: 179 KVSGSRFYYLLNEIVILDLALIRFALDR-LIEKGFTPVIPPYMVRRFVEEGSTSFEDFED 237 Query: 218 DMFCT-TDGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGML 276 ++ + +LIPT+E L ++++EI++ K LPL + ++P FR EAG+AG+DT+G+ Sbjct: 238 VIYKVEDEDLYLIPTAEHPLAGMHANEILDGKDLPLLYVGVSPCFRKEAGTAGKDTKGIF 297 Query: 277 RQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYD 336 R HQF K E +R E+S+ HE+++ AEE+ + L++ YRVV++CTGDLG+ A K YD Sbjct: 298 RVHQFHKVEQFVYSRPEESWEWHEKIIRNAEELFQELEIPYRVVNICTGDLGYVAAKKYD 357 Query: 337 LEVWLAGQNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAI 396 +E W+ GQ +RE+ S S C ++Q+RR+N R+RD + ++ HTLN + +A R ++AI Sbjct: 358 IEAWMPGQGKFREVVSASNCTDWQARRLNIRFRDRTDEKPRYVHTLNSTAIATSRAIVAI 417 Query: 397 LENYLNADGSVTIPTVLRPYMNNLAVIKKE 426 LEN+ DG+V IP VL Y ++ E Sbjct: 418 LENHQEEDGTVRIPKVLWKYTGFKEIVPVE 447 |
gi|494615|pdb|1SRY|A Chain A, Refined Crystal Structure Of The Seryl-Trna Synthetase From Thermus Thermophilus At 2.5 Angstroms Resolution Length = 421 | Back alignment and structure |
Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 146/428 (34%), Positives = 233/428 (54%), Gaps = 12/428 (2%) Query: 1 MLDIQWIRQNPEHLDIALKKRHLEPQSEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQ 60 M+D++ +RQ PE A++++ + E +L+LD + + L K++++++ RN + ++ + Sbjct: 1 MVDLKRLRQEPEVFHRAIREKGVALDLEALLALDREVQELKKRLQEVQTERNQVAKRVPK 60 Query: 61 AIAEGNLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTSAN 120 A E +AL L E+ LE+ E + L+ L+ +P P P+G Sbjct: 61 APPEEK----EALIARGKALGEEAKRLEEALREKEARLEALLLQVPLPPWPGAPVGGEEA 116 Query: 121 ENILIRSVGKKPSAIHLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQ 180 + R VG P +H + E G + R +++SG+R L G LA E AL + Sbjct: 117 NREIKR-VGGPPEFSFPPLDHVALMEKNGWWEP-RISQVSGSRSYALKGDLALYELALLR 174 Query: 181 FMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCT-TDGRWLIPTSEVSLTNL 239 F +D G+ ++ P R++A GTG P + D ++ +L T+EV L L Sbjct: 175 FAMDFMA-RRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIAETDLYLTGTAEVVLNAL 233 Query: 240 YSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITRE--EDSFT 297 +S EI+ ++LPLR+ AP+FRSEAGS G+D RG++R HQF K E +T E S Sbjct: 234 HSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDR 293 Query: 298 EHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCG 357 + +L AEEIL+ L+L YR+V + TGD+G + D+EV+L + YRE SCS Sbjct: 294 AFQELLENAEEILRLLELPYRLVEVATGDMGPGKWRQVDIEVYLPSEGRYRETHSCSALL 353 Query: 358 NFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYM 417 ++Q+RR N RYRDP + +++ +TLN + +A R L +LEN+ DG V +P L PYM Sbjct: 354 DWQARRANLRYRDPEGR-VRYAYTLNNTALATPRILAMLLENHQLQDGRVRVPQALIPYM 412 Query: 418 NNLAVIKK 425 V++ Sbjct: 413 -GKEVLEP 419 |
>gi|290560564|pdb|3LSQ|A Chain A, Trypanosoma Brucei Seryl-Trna Synthetase Length = 484 | Back alignment and structure |
Score = 296 bits (757), Expect = 5e-78, Method: Composition-based stats. Identities = 137/470 (29%), Positives = 213/470 (45%), Gaps = 44/470 (9%) Query: 2 LDIQWIRQNP--EHLDIALKKRHLEPQ-SEYILSLDEKNRILIKKIEDIRARRNSNSA-- 56 LDIQ R + + ++R +P + I+ D+K R E + N S Sbjct: 8 LDIQLFRDETGANIIRESQRRRFADPDIVDAIIEADKKWRRTQFLTEASKKLINICSKAV 67 Query: 57 ------------------QIGQAIAEG--NLSLVDAL-----KNETSTLKEQLPILEKEE 91 Q+ +A G V+ L K + L +Q+ L KE Sbjct: 68 GAKKKAKEADGDTSEIPPQVKEAYENGTLKGEQVEQLCVLQLKQLSKDLSDQVAGLAKEA 127 Query: 92 HEVCSSLKKLISCIPNVPLEEVPIGTSANENILIRSVGKKPSAIHLSREHFEIGEALGLM 151 ++ KL+ + N+ E VPI + + H I E LG+M Sbjct: 128 QQLEEERDKLMLNVGNILHESVPIAQDEETGNTVVRTFGNTTKRAK-LNHVSIMERLGMM 186 Query: 152 DF-DRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTG 210 D T ++G R VL G L L+ AL + +D + GYT P + + M Sbjct: 187 DTSKAVTSMAGGRSYVLKGGLVQLQVALVSYSLDF-LVKRGYTPFYPPFFLNRDVMGEVA 245 Query: 211 QIPKFADDMFCTT---DGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGS 267 Q+ +F ++++ + D ++LI TSE+ + + PL++ ++ FR EAG+ Sbjct: 246 QLSQFDEELYQVSGDGDKKYLIATSEMPIAAYHRGRWFTELKEPLKYAGMSTCFRKEAGA 305 Query: 268 AGRDTRGMLRQHQFWKCELVSITRE--EDSFTEHERMLSCAEEILKRLDLHYRVVSLCTG 325 GRDT G+ R HQF K E + E+S+ E M++ +EE K L L YRVV++C+G Sbjct: 306 HGRDTLGIFRVHQFDKIEQFVVCSPRQEESWRHLEDMITTSEEFNKSLGLPYRVVNICSG 365 Query: 326 DLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYRD-----PNSKSLKFTH 380 L +A K YDLE W +RE+ SCS C ++QS+ +N RY ++ H Sbjct: 366 ALNNAAAKKYDLEAWFPASGAFRELVSCSNCTDYQSQSVNCRYGPNLRGTAAQNVKEYCH 425 Query: 381 TLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYMNNLAVIKKEHILE 430 LNG+ A+ R + I ENY +G V IP VLRPYM + +I+ E+ + Sbjct: 426 MLNGTLCAITRTMCCICENYQTEEG-VVIPDVLRPYMMGIEMIRFENNAQ 474 |
>gi|75765332|pdb|1WLE|A Chain A, Crystal Structure Of Mammalian Mitochondrial Seryl-Trna Synthetase Complexed With Seryl-Adenylate Length = 501 | Back alignment and structure |
Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 126/443 (28%), Positives = 209/443 (47%), Gaps = 20/443 (4%) Query: 2 LDIQWIRQNPEHLDIALKKRHLEP---QSEYILSLDEKNRILIKKIEDIRARRNSNSAQI 58 LD++ + PE AL R E I+S ++ R L ++I + + + + + Sbjct: 41 LDMESLCAYPEDAARALDLRKGELRSKDLPGIISTWQELRQLREQIRSLEEEKEAVTEAV 100 Query: 59 GQAIAEGNLSLVDA------LKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEE 112 + + S V L+ +++QL +L +E ++ +PN + Sbjct: 101 RALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRALRLPNQTHPD 160 Query: 113 VPIGTSANENILIRSVGKKPSAIHLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLA 172 VP+G + +L VG KP+ R H EI E L ++ R + +SG R L G A Sbjct: 161 VPVGDESQARVLHV-VGDKPAFSFQPRGHLEIAEKLDIIRQKRLSHVSGHRSYYLRGAGA 219 Query: 173 HLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCT-----TDGRW 227 L+ L F ++ G+T ++ P L+R G G P + Sbjct: 220 LLQHGLVNFTLN-KLIHRGFTPMTVPDLLRGVVFEGCGMTPNAKPSQIYNIDPSRFEDLN 278 Query: 228 LIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELV 287 L T+EV L + + + LP+R + +R+E + G++ G+ R H F K E+ Sbjct: 279 LAGTAEVGLAGYFMDHSVAFRDLPIRMVCSSTCYRAETDT-GKEPWGLYRVHHFTKVEMF 337 Query: 288 SITRE--EDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQN 345 +T E S E LS EIL L LH+RV+ + T +LG A + +D+E W+ G+ Sbjct: 338 GVTGPGLEQSSELLEEFLSLQMEILTELGLHFRVLDMPTQELGLPAYRKFDIEAWMPGRG 397 Query: 346 LYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADG 405 + E++S S C +FQSRR++ ++ + L+F HT+N +G AV R LIA+LE+Y DG Sbjct: 398 RFGEVTSASNCTDFQSRRLHIMFQTEAGE-LQFAHTVNATGCAVPRLLIALLESYQQKDG 456 Query: 406 SVTIPTVLRPYMNNLAVIKKEHI 428 SV +P L+PY+ + H+ Sbjct: 457 SVLVPPALQPYLGTDRITTPTHV 479 |
>gi|215261312|pdb|3ERR|A Chain A, Microtubule Binding Domain From Mouse Cytoplasmic Dynein As A Fusion With Seryl-Trna Synthetase Length = 536 | Back alignment and structure |
Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 126/358 (35%), Positives = 191/358 (53%), Gaps = 8/358 (2%) Query: 71 DALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTSANENILIRSVGK 130 + L+ +L LE + + L+ L+ +P P P+G + R VG Sbjct: 176 ADMLKRVEPLRNELQKLEDDAKDNQQKLEALLLQVPLPPWPGAPVGGEEANREIKR-VGG 234 Query: 131 KPSAIHLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEH 190 P +H + E G + R +++SG+R L G LA E AL +F +D Sbjct: 235 PPEFSFPPLDHVALMEKNGWWEP-RISQVSGSRSYALKGDLALYELALLRFAMDFMA-RR 292 Query: 191 GYTEVSAPLLVRDEAMYGTGQIPKFADDMFCT-TDGRWLIPTSEVSLTNLYSHEIIESKS 249 G+ ++ P R++A GTG P + D ++ +L T+EV L L+S EI+ ++ Sbjct: 293 GFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIAETDLYLTGTAEVVLNALHSGEILPYEA 352 Query: 250 LPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITRE--EDSFTEHERMLSCAE 307 LPLR+ AP+FRSEAGS G+D RG++R HQF K E +T E S + +L AE Sbjct: 353 LPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAE 412 Query: 308 EILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSR 367 EIL+ L+L YR+V + TGD+G + D+EV+L + YRE SCS ++Q+RR N R Sbjct: 413 EILRLLELPYRLVEVATGDMGPGKWRQVDIEVYLPSEGRYRETHSCSALLDWQARRANLR 472 Query: 368 YRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYMNNLAVIKK 425 YRDP + +++ +TLN + +A R L +LEN+ DG V +P L PYM V++ Sbjct: 473 YRDPEGR-VRYAYTLNNTALATPRILAMLLENHQLQDGRVRVPQALIPYM-GKEVLEP 528 |
gi|5107656|pdb|1QF6|A Chain A, Structure Of E. Coli Threonyl-Trna Synthetase Complexed With Its Cognate Trna Length = 642 | Back alignment and structure |
Score = 57.8 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 41/337 (12%), Positives = 93/337 (27%), Gaps = 35/337 (10%) Query: 32 SLDEKNRILIKKIEDIRARRNSNSAQ----IGQAIAEGNLSLVDALKNETSTLKEQLPIL 87 +D + + +E + R + + + I + ++ A + E+ + + Sbjct: 105 DVDLDRTLTQEDVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENI 164 Query: 88 EKEEHEVCSSLKKLISCIPNVPLEEVPIGTSANENILIRSVGKKPSAIHLSREHFEIGEA 147 ++ ++ + + + + + S + + + A Sbjct: 165 AHDDKPGLYFHEEYVDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYGTAWA 224 Query: 148 LGL---------------------MDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLH 186 D A V + + + Sbjct: 225 DKKALNAYLQRLEEAAKRDHRKIGKQLDLYHMQEEAPGMVFWHNDGWTIFRELEVFVRSK 284 Query: 187 TSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCT---TDGRWLIPTSEVSLTNLYSHE 243 E+ Y EV P ++ TG + D MF T + P + +++ Sbjct: 285 LKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSENREYCIKPMNCPGHVQIFNQG 344 Query: 244 IIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERML 303 + + LPLR R+E + G++R F + + EE E + Sbjct: 345 LKSYRDLPLRMAEFGSCHRNEPSGSLH---GLMRVRGFTQDDAHIFCTEEQIRDEVNGCI 401 Query: 304 SCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVW 340 ++ VV L T + E+W Sbjct: 402 RLVYDMYSTFGFEKIVVKLSTR----PEKRIGSDEMW 434 |
>gi|9955215|pdb|1EVK|A Chain A, Crystal Structure Of A Truncated Form Of Threonyl-Trna Synthetase With The Ligand Threonine Length = 401 | Back alignment and structure |
Score = 55.9 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 58/191 (30%), Gaps = 10/191 (5%) Query: 153 FDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQI 212 D A V + + + E+ Y EV P ++ TG Sbjct: 10 LDLYHMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHW 69 Query: 213 PKFADDMFCT---TDGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAG 269 + D MF T + P + +++ + + LPLR R+E + Sbjct: 70 DNYKDAMFTTSSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSL 129 Query: 270 RDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGF 329 G++R F + + EE E + ++ VV L T Sbjct: 130 H---GLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYDMYSTFGFEKIVVKLSTR---- 182 Query: 330 SACKTYDLEVW 340 + E+W Sbjct: 183 PEKRIGSDEMW 193 |
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 430 | seryl-tRNA synthetase [Candidatus Liberibacter asiaticu | ||
3lss_A | 484 | Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA | 1e-115 | |
2dq0_A | 455 | Seryl-tRNA synthetase; coiled-coil, homodimer, structur | 1e-113 | |
2dq3_A | 425 | Seryl-tRNA synthetase; coiled-coil, homodimer, structur | 1e-112 | |
1wle_A | 501 | Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos tau | 1e-103 | |
1ses_A | 421 | Seryl-tRNA synthetase; ligase(synthetase); HET: AHX AMP | 2e-85 | |
3err_A | 536 | Fusion protein of microtubule binding domain from mouse | 1e-104 | |
2cja_A | 522 | Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; | 2e-64 | |
3mf2_A | 346 | BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA | 5e-62 | |
3ial_A | 518 | Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA | 2e-35 | |
1nj8_A | 459 | Proline-tRNA synthetase, proline--tRNA ligase; class-II | 3e-21 | |
1nyr_A | 645 | Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET | 3e-16 | |
1nj1_A | 501 | Proline-tRNA synthetase, proline--tRNA ligase; protein- | 3e-35 | |
1evl_A | 401 | Threonyl-tRNA synthetase; amino acid recognition, zinc | 6e-31 | |
1qf6_A | 642 | THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, zinc, | 3e-11 | |
1hc7_A | 477 | Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP | 9e-16 | |
2j3l_A | 572 | Prolyl-tRNA synthetase; class II aminoacyl- tRNA synthe | 1e-11 | |
2zin_A | 291 | Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 8e-06 | |
2i4l_A | 458 | Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomona | 1e-04 | |
3a32_A | 471 | Probable threonyl-tRNA synthetase 1; aeropyrum pernix K | 7e-09 |
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A* Length = 484 | Back alignment and structure |
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Score = 409 bits (1051), Expect = e-115 Identities = 138/468 (29%), Positives = 213/468 (45%), Gaps = 46/468 (9%) Query: 1 MLDIQWIRQNPEHLDI--ALKKRHLEPQS-EYILSLDEKNRILIKKIEDIRARRNSNSAQ 57 +LDIQ R I + ++R +P + I+ D+K R E + N S Sbjct: 7 VLDIQLFRDETGANIIRESQRRRFADPDIVDAIIEADKKWRRTQFLTEASKKLINICSKA 66 Query: 58 IGQAIAEGNLS---------------------------LVDALKNETSTLKEQLPILEKE 90 +G V LK + L +Q+ L KE Sbjct: 67 VGAKKKAKEADGDTSEIPPQVKEAYENGTLKGEQVEQLCVLQLKQLSKDLSDQVAGLAKE 126 Query: 91 EHEVCSSLKKLISCIPNVPLEEVPIGTSANEN-ILIRSVGKKPSAIHLSREHFEIGEALG 149 ++ KL+ + N+ E VPI ++R+ G L+ H I E LG Sbjct: 127 AQQLEEERDKLMLNVGNILHESVPIAQDEETGNTVVRTFGNTTKRAKLN--HVSIMERLG 184 Query: 150 LMDFDR-ATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYG 208 +MD + T ++G R VL G L L+ AL + +D + GYT P + + M Sbjct: 185 MMDTSKAVTSMAGGRSYVLKGGLVQLQVALVSYSLD-FLVKRGYTPFYPPFFLNRDVMGE 243 Query: 209 TGQIPKFADDMFCTT---DGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEA 265 Q+ +F ++++ + D ++LI TSE+ + + PL++ ++ FR EA Sbjct: 244 VAQLSQFDEELYQVSGDGDKKYLIATSEMPIAAYHRGRWFTELKEPLKYAGMSTCFRKEA 303 Query: 266 GSAGRDTRGMLRQHQFWKCELVSITREE--DSFTEHERMLSCAEEILKRLDLHYRVVSLC 323 G+ GRDT G+ R HQF K E + +S+ E M++ +EE K L L YRVV++C Sbjct: 304 GAHGRDTLGIFRVHQFDKIEQFVVCSPRQEESWRHLEDMITTSEEFNKSLGLPYRVVNIC 363 Query: 324 TGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYRDPNS-----KSLKF 378 +G L +A K YDLE W +RE+ SCS C ++QS+ +N RY ++ Sbjct: 364 SGALNNAAAKKYDLEAWFPASGAFRELVSCSNCTDYQSQSVNCRYGPNLRGTAAQNVKEY 423 Query: 379 THTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYMNNLAVIKKE 426 H LNG+ A+ R + I ENY +G V IP VLRPYM + +I+ E Sbjct: 424 CHMLNGTLCAITRTMCCICENYQTEEG-VVIPDVLRPYMMGIEMIRFE 470 |
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A Length = 455 | Back alignment and structure |
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Score = 404 bits (1040), Expect = e-113 Identities = 160/450 (35%), Positives = 251/450 (55%), Gaps = 27/450 (6%) Query: 1 MLDIQWIRQNPEHLDIALKKRHLEPQSEY---ILSLDEKNRILIKKIEDIRARRNSNSAQ 57 MLDI+ IR+NPE + L KR + ++ IL LD + R +K+I +R RN + + Sbjct: 1 MLDIKLIRENPELVKNDLIKRGELEKVKWVDEILKLDTEWRTKLKEINRLRHERNKIAVE 60 Query: 58 IGQAIAEGNLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGT 117 IG+ +G VD L ++ + +++ LE E E+ + + +PN+ VP+G Sbjct: 61 IGKRRKKGEP--VDELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPNITHPSVPVGK 118 Query: 118 SANENILIRSVGKKPSAIHLS--------------------REHFEIGEALGLMDFDRAT 157 N+N+ IR GK + H ++ E LG DF RA Sbjct: 119 DENDNVPIRFWGKARVWKGHLERFLEQSQGKMEYEILEWKPKLHVDLLEILGGADFARAA 178 Query: 158 KLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFAD 217 K+SG+RF L + L+ AL +F +D E G+T V P +VR G+ F D Sbjct: 179 KVSGSRFYYLLNEIVILDLALIRFALDRLI-EKGFTPVIPPYMVRRFVEEGSTSFEDFED 237 Query: 218 DMFCTT-DGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGML 276 ++ + +LIPT+E L ++++EI++ K LPL + ++P FR EAG+AG+DT+G+ Sbjct: 238 VIYKVEDEDLYLIPTAEHPLAGMHANEILDGKDLPLLYVGVSPCFRKEAGTAGKDTKGIF 297 Query: 277 RQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYD 336 R HQF K E +R E+S+ HE+++ AEE+ + L++ YRVV++CTGDLG+ A K YD Sbjct: 298 RVHQFHKVEQFVYSRPEESWEWHEKIIRNAEELFQELEIPYRVVNICTGDLGYVAAKKYD 357 Query: 337 LEVWLAGQNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAI 396 +E W+ GQ +RE+ S S C ++Q+RR+N R+RD + ++ HTLN + +A R ++AI Sbjct: 358 IEAWMPGQGKFREVVSASNCTDWQARRLNIRFRDRTDEKPRYVHTLNSTAIATSRAIVAI 417 Query: 397 LENYLNADGSVTIPTVLRPYMNNLAVIKKE 426 LEN+ DG+V IP VL Y ++ E Sbjct: 418 LENHQEEDGTVRIPKVLWKYTGFKEIVPVE 447 |
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus VF5} Length = 425 | Back alignment and structure |
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Score = 400 bits (1029), Expect = e-112 Identities = 207/429 (48%), Positives = 283/429 (65%), Gaps = 7/429 (1%) Query: 1 MLDIQWIRQNPEHLDIALKKRHLEPQS--EYILSLDEKNRILIKKIEDIRARRNSNSAQI 58 M+DI IR+ P+++ L R E S + +L LD++ R +IK++E +R+ RN S +I Sbjct: 1 MIDINLIREKPDYVKERLATRDKELVSLVDKVLELDKRRREIIKRLEALRSERNKLSKEI 60 Query: 59 GQAIAEGNLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTS 118 G+ EG ++N LKE++ LE+E +V LK + IPN+P VP+G Sbjct: 61 GKLKREGKD--TTEIQNRVKELKEEIDRLEEELRKVEEELKNTLLWIPNLPHPSVPVGED 118 Query: 119 ANENILIRSVGKKPSAIHLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERAL 178 +N+ +R G+ + H+EIGE LG++DF R KLSG+RF+V+ G A LERAL Sbjct: 119 EKDNVEVRRWGEPRKFDFEPKPHWEIGERLGILDFKRGAKLSGSRFTVIAGWGARLERAL 178 Query: 179 GQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMF-CTTDGRWLIPTSEVSLT 237 FM+DLHT + GY E+ P LV+ E + GTGQ+PKF +D++ C D +LIPT+EV LT Sbjct: 179 INFMLDLHT-KKGYKEICPPHLVKPEILIGTGQLPKFEEDLYKCERDNLYLIPTAEVPLT 237 Query: 238 NLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFT 297 NLY EI++ ++LP+ T P +R EAG+ G+D RG++RQHQF K ELV I + S+ Sbjct: 238 NLYREEILKEENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVKIVHPDTSYD 297 Query: 298 EHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCG 357 E E+++ AEE+L+ L L YRVV LCTGDLGFSA KTYD+EVW QN YREISSCS C Sbjct: 298 ELEKLVKDAEEVLQLLGLPYRVVELCTGDLGFSAAKTYDIEVWFPSQNKYREISSCSNCE 357 Query: 358 NFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYM 417 +FQ+RRMN+R++D + +F HTLNGSG+AVGR L AILENY DGSV +P VLR Y+ Sbjct: 358 DFQARRMNTRFKDSKTGKNRFVHTLNGSGLAVGRTLAAILENYQQEDGSVVVPEVLRDYV 417 Query: 418 NNLAVIKKE 426 VI+ E Sbjct: 418 GT-DVIRPE 425 |
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} Length = 501 | Back alignment and structure |
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Score = 369 bits (949), Expect = e-103 Identities = 124/444 (27%), Positives = 213/444 (47%), Gaps = 20/444 (4%) Query: 1 MLDIQWIRQNPEHLDIALKKRHLEPQSEY---ILSLDEKNRILIKKIEDIRARRNSNSAQ 57 +LD++ + PE AL R E +S+ I+S ++ R L ++I + + + + Sbjct: 40 LLDMESLCAYPEDAARALDLRKGELRSKDLPGIISTWQELRQLREQIRSLEEEKEAVTEA 99 Query: 58 IGQAIAEGNLS------LVDALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVPLE 111 + + + S +L+ +++QL +L +E ++ +PN Sbjct: 100 VRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRALRLPNQTHP 159 Query: 112 EVPIGTSANENILIRSVGKKPSAIHLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHL 171 +VP+G ++ ++ VG KP+ R H EI E L ++ R + +SG R L G Sbjct: 160 DVPVGDE-SQARVLHVVGDKPAFSFQPRGHLEIAEKLDIIRQKRLSHVSGHRSYYLRGAG 218 Query: 172 AHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTT-----DGR 226 A L+ L F ++ +T ++ P L+R G G P + Sbjct: 219 ALLQHGLVNFTLNKLIHRG-FTPMTVPDLLRGVVFEGCGMTPNAKPSQIYNIDPSRFEDL 277 Query: 227 WLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCEL 286 L T+EV L + + + LP+R + +R+E + G++ G+ R H F K E+ Sbjct: 278 NLAGTAEVGLAGYFMDHSVAFRDLPIRMVCSSTCYRAETDT-GKEPWGLYRVHHFTKVEM 336 Query: 287 VSITR--EEDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQ 344 +T E S E LS EIL L LH+RV+ + T +LG A + +D+E W+ G+ Sbjct: 337 FGVTGPGLEQSSELLEEFLSLQMEILTELGLHFRVLDMPTQELGLPAYRKFDIEAWMPGR 396 Query: 345 NLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNAD 404 + E++S S C +FQSRR++ ++ + L+F HT+N +G AV R LIA+LE+Y D Sbjct: 397 GRFGEVTSASNCTDFQSRRLHIMFQTEAGE-LQFAHTVNATGCAVPRLLIALLESYQQKD 455 Query: 405 GSVTIPTVLRPYMNNLAVIKKEHI 428 GSV +P L+PY+ + H+ Sbjct: 456 GSVLVPPALQPYLGTDRITTPTHV 479 |
>1ses_A Seryl-tRNA synthetase; ligase(synthetase); HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A Length = 421 | Back alignment and structure |
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Score = 311 bits (797), Expect = 2e-85 Identities = 136/421 (32%), Positives = 212/421 (50%), Gaps = 11/421 (2%) Query: 1 MLDIQWIRQNPEHLDIALKKRHLEPQSEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQ 60 M+D++ +RQ PE A++++ + E +L+LD + + L K++++++ RN + ++ + Sbjct: 1 MVDLKRLRQEPEVFHRAIREKGVALDLEALLALDREVQELKKRLQEVQTERNQVAKRVPK 60 Query: 61 AIAEGNLSLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTSAN 120 A E +AL L E+ LE+ E + L+ L+ +P P P+G Sbjct: 61 APPEE----KEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLPPWPGAPVGGEEA 116 Query: 121 ENILIRSVGKKPSAIHLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQ 180 + R G P R +++SG+R L G LA E AL + Sbjct: 117 NREIKRVGG--PPEFSFPPLDHVALMEKNGWWEPRISQVSGSRSYALKGDLALYELALLR 174 Query: 181 FMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMF-CTTDGRWLIPTSEVSLTNL 239 F +D GTG P + D ++ +L T+EV L L Sbjct: 175 FAMDFMARRGFLPMTLPSYAREKA-FLGTGHFPAYRDQVWAIAETDLYLTGTAEVVLNAL 233 Query: 240 YSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSI--TREEDSFT 297 +S EI+ ++LPLR+ AP+FRSEAGS G+D RG++R HQF K E + E S Sbjct: 234 HSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDR 293 Query: 298 EHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCG 357 + +L AEEIL+ L+L YR+V + TGD+G + D+EV+L + YRE SCS Sbjct: 294 AFQELLENAEEILRLLELPYRLVEVATGDMGPGKWRQVDIEVYLPSEGRYRETHSCSALL 353 Query: 358 NFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYM 417 ++Q+RR N RYRDP + ++ +TLN + +A R L +LEN+ DG V +P L PYM Sbjct: 354 DWQARRANLRYRDPEGRV-RYAYTLNNTALATPRILAMLLENHQLQDGRVRVPQALIPYM 412 Query: 418 N 418 Sbjct: 413 G 413 |
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} Length = 536 | Back alignment and structure |
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Score = 375 bits (963), Expect = e-104 Identities = 126/349 (36%), Positives = 189/349 (54%), Gaps = 7/349 (2%) Query: 73 LKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTSANENILIRSVGKKP 132 + L+ +L LE + + L+ L+ +P P P+G N I+ VG P Sbjct: 178 MLKRVEPLRNELQKLEDDAKDNQQKLEALLLQVPLPPWPGAPVGGEEA-NREIKRVGGPP 236 Query: 133 SAIHLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGY 192 +H + E G + R +++SG+R L G LA E AL +F +D G+ Sbjct: 237 EFSFPPLDHVALMEKNGWWEP-RISQVSGSRSYALKGDLALYELALLRFAMDFMA-RRGF 294 Query: 193 TEVSAPLLVRDEAMYGTGQIPKFADDMF-CTTDGRWLIPTSEVSLTNLYSHEIIESKSLP 251 ++ P R++A GTG P + D ++ +L T+EV L L+S EI+ ++LP Sbjct: 295 LPMTLPSYAREKAFLGTGHFPAYRDQVWAIAETDLYLTGTAEVVLNALHSGEILPYEALP 354 Query: 252 LRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITRE--EDSFTEHERMLSCAEEI 309 LR+ AP+FRSEAGS G+D RG++R HQF K E +T E S + +L AEEI Sbjct: 355 LRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEI 414 Query: 310 LKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYR 369 L+ L+L YR+V + TGD+G + D+EV+L + YRE SCS ++Q+RR N RYR Sbjct: 415 LRLLELPYRLVEVATGDMGPGKWRQVDIEVYLPSEGRYRETHSCSALLDWQARRANLRYR 474 Query: 370 DPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYMN 418 DP + +++ +TLN + +A R L +LEN+ DG V +P L PYM Sbjct: 475 DPEGR-VRYAYTLNNTALATPRILAMLLENHQLQDGRVRVPQALIPYMG 522 |
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A Length = 522 | Back alignment and structure |
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Score = 242 bits (618), Expect = 2e-64 Identities = 57/433 (13%), Positives = 116/433 (26%), Gaps = 73/433 (16%) Query: 40 LIKKIEDIRARRNSNSAQIGQAIAEGNLSLVDALKNETSTLKEQLPILEK--EEHEVCSS 97 + K I R + I + A+ L ++ ++ E LE E E+ Sbjct: 104 ALGKKYKIGIRGIEVESFIIKVPADHELRMLKVPYIKSMENIEGGIQLELEVGEAEMK-- 161 Query: 98 LKKLISCIPNVPLEEVPIGTSANENILIRSVGKKPSAIH--LSREHFEIGEALGLMD-FD 154 VP + + E + + + + EH + M Sbjct: 162 --------NRVPDRILTLLEEKIEAAQYGAKAEHWNLLWQREPMEHPFKEDPTQAMMKEG 213 Query: 155 RATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPK 214 + S + A + R + +++ GY E+ P LV E +G Sbjct: 214 WLKRGSSRGQWIHGPQSARIFRTFEKIVLEELLEPLGYREMIFPKLVTWEVWMKSGHAKG 273 Query: 215 FADDMFCTTDGR----------------------------------WLIPTSEVSLTNLY 240 +++ + + Sbjct: 274 VYPEIYYVCPPQTRDPDYWEEVADYYKVTHEVPTKLIKEKIAEPIGGMCYAQCPPFWMYV 333 Query: 241 SHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHE 300 + E + ++ +P++ + + G+ R +F + E+V I +E+ E Sbjct: 334 AGETLPNEEIPVKVFDRSGTSHRYESGG---IHGIERVDEFHRIEIVWIGTKEEVLKCAE 390 Query: 301 RMLSCAEEILK-RLDLHYRVVSL---------CTGDLGFSACKTYDLEVWLAGQNLYREI 350 + I LD+ +R + G + T D E L + E Sbjct: 391 ELHDRYMHIFNDILDIEWRKARVTPWFMAQEGLLGLAEENTVGTTDYEACLPYRGPDGEW 450 Query: 351 SSCST---CGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSV 407 G+ + N + + + SGV + R L Sbjct: 451 LEFQNVSINGDKYPKGFNVKLQSG-----DELWS-GCSGVGLERWAAVFLAQKGLDPA-- 502 Query: 408 TIPTVLRPYMNNL 420 P R + + Sbjct: 503 NWPEEFRNRVGEM 515 |
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* Length = 346 | Back alignment and structure |
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Score = 233 bits (596), Expect = 5e-62 Identities = 46/323 (14%), Positives = 89/323 (27%), Gaps = 61/323 (18%) Query: 141 HFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLL 200 + + + AR ++ + L + E G + P + Sbjct: 37 ADPLDHLADKLFHSMGSDGVYARTALYESIVERLAALI------TSHREAGTEALRFPPV 90 Query: 201 VRDEAMYGTGQIPKFADDMFCTTDGR----------------------------WLIPTS 232 + + +G + F + + C L P + Sbjct: 91 MSRAQLEKSGYLKSFPNLLGCVCGLHGTEREINAAVSRFDAGGDWTTSLSPADLVLSPAA 150 Query: 233 EVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITRE 292 + + + K LRF A FR E + + R F E V I Sbjct: 151 CYPVYPIAASRGPLPK-GGLRFDVAADCFRREPS------KHLDRLQSFRMREYVCIGTP 203 Query: 293 EDSFTEHERMLSCAEEILKRLDLHYRVVSLCT---GDLGFSACKT-------YDLEVWLA 342 +D ER + A+ I + L L +RV G +G + ++L + L Sbjct: 204 DDVSDFRERWMVRAQAIARDLGLTFRVDYASDPFFGRVGQMKAVSQKQQQLKFELLIPLR 263 Query: 343 GQNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLN 402 + S + + + + HT + R +A+ + Sbjct: 264 SEEQPTACMSFNYHREHFGTTWGIQDANG-----EPAHT-GCVAFGMDRLAVAMFHTHGT 317 Query: 403 ADG----SVTIPTVLRPYMNNLA 421 V L+P++ A Sbjct: 318 DLSAWPAKVRDILGLQPHVAAGA 340 |
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, Pro(Cys)RS, translation, ATP-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803} Length = 518 | Back alignment and structure |
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Score = 145 bits (367), Expect = 2e-35 Identities = 49/296 (16%), Positives = 102/296 (34%), Gaps = 25/296 (8%) Query: 132 PSAIHLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHG 191 + + I +A L+D + G V + +E A+ + + + + G Sbjct: 19 KTRDTFADWFDAIMDAAELVDRRYP--VKG--CVVFRPYGFFMENAIMRLCEEEYA-KVG 73 Query: 192 YTEVSAPLLVRDEAMYGT-GQIPKFADDMFCTTDGR--------WLIPTSEVSLTNLYSH 242 +++ P ++ + + I F + F G L PTSE ++ +++S Sbjct: 74 ISQILFPTVIPESFLKKESDHIKGFEAECFWVEKGGLQPLEERLALRPTSETAIYSMFSK 133 Query: 243 EIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSI--TREEDSFTEHE 300 + K LPL+ FR E ++T+ ++R + E T E+ + Sbjct: 134 WVRSYKDLPLKIHQTCTIFRHET----KNTKPLIRVREIHWNEAHCCHATAEDAVSQLSD 189 Query: 301 RMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQ 360 L + + D A + +V + + + G Sbjct: 190 YWKVIDTIFSDELCFKGQKLRRVCWDRFPGADYSEVSDVVM-PCGRVLQTAGIHNLGQRF 248 Query: 361 SRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPY 416 S + Y + ++S+ T G R L L + ++ G V +P ++ P Sbjct: 249 SSTFDILYANKANESVHPYLTCAGIS---TRVLACALSIHGDSGGLV-LPPLIAPI 300 |
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 Length = 459 | Back alignment and structure |
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Score = 98.3 bits (244), Expect = 3e-21 Identities = 50/294 (17%), Positives = 105/294 (35%), Gaps = 24/294 (8%) Query: 143 EIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVR 202 +I E + D K G V + + R + + +L E G+ E P+L+ Sbjct: 13 DILEKAEIYDVRYPIK--G--CGVYLPYGFKIRRYTFEIIRNLLD-ESGHDEALFPMLIP 67 Query: 203 DEAMYGTGQ-IPKFADDMFCTTDGR--------WLIPTSEVSLTNLYSHEIIESKSLPLR 253 ++ + + I F D+++ T G L PTSE + + + LP++ Sbjct: 68 EDLLAKEAEHIKGFEDEVYWVTHGGKTQLDVKLALRPTSETPIYYMMKLWVKVHTDLPIK 127 Query: 254 FTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSI--TREEDSFTEHERMLSCAEEILK 311 + +FR E + TR ++R + + + +E++ + + +S ++ Sbjct: 128 IYQIVNTFRYET----KHTRPLIRLREIMTFKEAHTAHSTKEEAENQVKEAISIYKKFFD 183 Query: 312 RLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYRDP 371 L + Y + D A T + +I++ G S+ + P Sbjct: 184 TLGIPYLISKRPEWDKFPGAEYTMAFDTIFPDGR-TMQIATVHNLGQNFSKTFEIIFETP 242 Query: 372 NSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYMNNLAVIKK 425 T R + +I+ + + G + P V + + +I K Sbjct: 243 TGDKDYAYQT---CYGISDRVIASIIAIHGDEKGLILPPIVAPIQVVIVPLIFK 293 |
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Length = 645 | Back alignment and structure |
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Score = 82.0 bits (202), Expect = 3e-16 Identities = 54/333 (16%), Positives = 104/333 (31%), Gaps = 52/333 (15%) Query: 138 SREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSA 197 R+H +IG+ L L + L GA + + A + R + ++++D GY V Sbjct: 240 ERDHRKIGKELELFTNSQ---LVGAGLPLWLPNGATIRREIERYIVDKEV-SMGYDHVYT 295 Query: 198 PLLVRDEAMYGTGQIPKFADDMFCTTDGRW-----LIPTSEVSLTNLYSHEIIESKSLPL 252 P+L + +G + +DMF L P + +Y+++ + LP+ Sbjct: 296 PVLANVDLYKTSGHWDHYQEDMFPPMQLDETESMVLRPMNCPHHMMIYANKPHSYRELPI 355 Query: 253 RFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKR 312 R L R EA A G+ R + R + E +R+++ ++ K Sbjct: 356 RIAELGTMHRYEASGA---VSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNMIIDVYKD 412 Query: 313 LDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYR------------------------ 348 L D D ++W +N+ + Sbjct: 413 FGFEDYSFRLSYRDPEDKEKYFDDDDMWNKAENMLKEAADELGLSYEEAIGEAAFYGPKL 472 Query: 349 -----------EISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAIL 397 E S + R + Y + + + G + R + + Sbjct: 473 DVQVKTAMGKEETLSTAQLDFLLPERFDLTYIGQDGEHHRPVVIHRGVVSTMERFVAFLT 532 Query: 398 ENYLNADGSVTIPTVLRPYMNNLAVIKKEHILE 430 E PT L P + + + + Sbjct: 533 EET-----KGAFPTWLAPKQVQIIPVNVDLHYD 560 |
>1nj1_A Proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase; HET: 5CA; 2.55A {Methanothermobacterthermautotrophicus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A* Length = 501 | Back alignment and structure |
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Score = 144 bits (365), Expect = 3e-35 Identities = 56/319 (17%), Positives = 110/319 (34%), Gaps = 32/319 (10%) Query: 105 IPNVPLEEVPIGTSANENILIRSVGKKPSAIHLSREHFEIGEALGLMDFDRATKLSGARF 164 +P + PI N R G+K + S I E ++D G Sbjct: 15 VPRGSHMQKPIKKDPN-----RYHGEKMTE--FSEWFHNILEEAEIIDQRYPV--KG--M 63 Query: 165 SVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGT-GQIPKFADDMFCTT 223 V H + + + + + + + EV PLLV ++ + + F D+++ T Sbjct: 64 HVWMPHGFMIRKNTLKILRRIL--DRDHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVT 121 Query: 224 DGR--------WLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGM 275 G L PTSE + +++ + LP+RF + +FR E + TR + Sbjct: 122 HGGLSKLQRKLALRPTSETVMYPMFALWVRSHTDLPMRFYQVVNTFRYET----KHTRPL 177 Query: 276 LRQHQFWKCELVSI--TREEDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACK 333 +R + + ++ + ER + +E L + Y + D + Sbjct: 178 IRVREITTFKEAHTIHATASEAEEQVERAVEIYKEFFNSLGIPYLITRRPPWDKFPGSEY 237 Query: 334 TYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCL 393 T + + +I + G +R ++ P T G R + Sbjct: 238 TVAFDTLMPDGK-TLQIGTVHNLGQTFARTFEIKFETPEGDHEYVHQTCYGLSD---RVI 293 Query: 394 IAILENYLNADGSVTIPTV 412 +++ + + G P V Sbjct: 294 ASVIAIHGDESGLCLPPDV 312 |
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A* Length = 401 | Back alignment and structure |
---|
Score = 130 bits (328), Expect = 6e-31 Identities = 39/221 (17%), Positives = 68/221 (30%), Gaps = 15/221 (6%) Query: 139 REHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAP 198 R+H +IG+ L L + R L F+ E+ Y EV P Sbjct: 1 RDHRKIGKQLDLYHMQE----EAPGMVFWHNDGWTIFRELEVFVRSKLK-EYQYQEVKGP 55 Query: 199 LLVRDEAMYGTGQIPKFADDMFCTTDGR---WLIPTSEVSLTNLYSHEIIESKSLPLRFT 255 ++ TG + D MF T+ + P + +++ + + LPLR Sbjct: 56 FMMDRVLWEKTGHWDNYKDAMFTTSSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMA 115 Query: 256 TLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDL 315 R+E + G++R F + + EE E + ++ Sbjct: 116 EFGSCHRNEPSGS---LHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYDMYSTFGF 172 Query: 316 HYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTC 356 VV L T E+W + + Sbjct: 173 EKIVVKLSTRPEKRIGSD----EMWDRAEADLAVALEENNI 209 |
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, zinc, mRNA, aminoacylation, translational regulation, protein/RNA, ligase/RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 Length = 642 | Back alignment and structure |
---|
Score = 64.7 bits (157), Expect = 3e-11 Identities = 38/221 (17%), Positives = 65/221 (29%), Gaps = 15/221 (6%) Query: 139 REHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAP 198 R+H +IG+ L L + R L F+ E+ Y EV P Sbjct: 242 RDHRKIGKQLDLYHMQE----EAPGMVFWHNDGWTIFRELEVFVRSKL-KEYQYQEVKGP 296 Query: 199 LLVRDEAMYGTGQIPKFADDMFCTTDGR---WLIPTSEVSLTNLYSHEIIESKSLPLRFT 255 ++ TG + D MF T+ + P + +++ + + LPLR Sbjct: 297 FMMDRVLWEKTGHWDNYKDAMFTTSSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMA 356 Query: 256 TLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDL 315 R G++R F + + EE E + ++ Sbjct: 357 EFGSCHR---NEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYDMYSTFGF 413 Query: 316 HYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTC 356 VV L T E+W + + Sbjct: 414 EKIVVKLSTRPEKRIG----SDEMWDRAEADLAVALEENNI 450 |
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A Length = 477 | Back alignment and structure |
---|
Score = 80.1 bits (197), Expect = 9e-16 Identities = 44/263 (16%), Positives = 83/263 (31%), Gaps = 22/263 (8%) Query: 176 RALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGT-GQIPKFADDMFCTTDGR-------- 226 + Q + + E G+ PL + + + F+ ++ T Sbjct: 48 ENIQQVLDRMFK-ETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPL 106 Query: 227 WLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKC-- 284 + PTSE + ++S I + LP R E TR LR +F Sbjct: 107 AVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWE-----MRTRPFLRTSEFLWQEG 161 Query: 285 ELVSITREEDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQ 344 TREE + A + + + A T +E + Sbjct: 162 HTAHATREEAEEEVRRMLSIYARLAREYAAIPVIEGLKTEKEKFAGAVYTTTIEALM-KD 220 Query: 345 NLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNAD 404 + + G +R + +++D + + T G R + AI+ + + Sbjct: 221 GKALQAGTSHYLGENFARAFDIKFQDRDLQVKYVHTTSWGLSW---RFIGAIIMTHGDDR 277 Query: 405 GSVTIPTVLRPYMNNLAVIKKEH 427 G + +P L P + I K+ Sbjct: 278 G-LVLPPRLAPIQVVIVPIYKDE 299 |
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- tRNA synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A* Length = 572 | Back alignment and structure |
---|
Score = 66.1 bits (160), Expect = 1e-11 Identities = 37/169 (21%), Positives = 61/169 (36%), Gaps = 10/169 (5%) Query: 172 AHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDG----RW 227 + L M + + E+ P L+ E +G+ + +++ D Sbjct: 47 NRVLEKLKTIMREEFE-KIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDRNDRDYI 105 Query: 228 LIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELV 287 L PT E + T L EI K LPL + +R E R G+LR +F + Sbjct: 106 LGPTHEETFTELIRDEINSYKRLPLNLYQIQTKYRDEK----RSRSGLLRGREFIMKDGY 161 Query: 288 SITREEDSF-TEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTY 335 S +E S + I +R L +R + G +G K + Sbjct: 162 SFHADEASLDQSYRDYEKAYSRIFERCGLEFRAIIGDGGAMGGKDSKEF 210 |
>2zin_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, pyrrolysine, ATP analogue, non-natural amino acid, unnatural amino acid, ATP-binding; HET: ANP LBY; 1.79A {Methanosarcina mazei} PDB: 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* Length = 291 | Back alignment and structure |
---|
Score = 47.0 bits (111), Expect = 8e-06 Identities = 33/177 (18%), Positives = 61/177 (34%), Gaps = 20/177 (11%) Query: 170 HLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDE--AMYGTGQIPKFADDMFCTTDGRW 227 +L LER + +F +D G+ E+ +P+L+ E G + + +F Sbjct: 79 YLGKLEREITRFFVD-----RGFLEIKSPILIPLEYIERMGIDNDTELSKQIFRVDKNFC 133 Query: 228 LIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELV 287 L P +L N P++ + P +R E+ +F Sbjct: 134 LRPMLAPNLYNYLRKLDRALPD-PIKIFEIGPCYRKESDGKE-------HLEEFTMLNFC 185 Query: 288 SITREEDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACK-TYDLEVWLAG 343 + S E + S + L L + +++V G + DLE+ A Sbjct: 186 QM----GSGCTRENLESIITDFLNHLGIDFKIVGDSCMVYGDTLDVMHGDLELSSAV 238 |
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A* Length = 458 | Back alignment and structure |
---|
Score = 43.3 bits (101), Expect = 1e-04 Identities = 33/188 (17%), Positives = 58/188 (30%), Gaps = 12/188 (6%) Query: 176 RALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTD--GRW--LIPT 231 + + Q + + G E+ P L + +G+ + +M D R PT Sbjct: 71 KKIEQIVREEQN-RAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIADRHKRELLYGPT 129 Query: 232 SEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITR 291 +E +T ++ I KSLPL + FR E M + K Sbjct: 130 NEEMITEIFRAYIKSYKSLPLNLYHIQWKFRDEQRP---RFGVMRGREFLMKDAYSFDVD 186 Query: 292 EEDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREIS 351 E + + +M R+ L + TG +G E + + + Sbjct: 187 EAGARKSYNKMFVAYLRTFARMGLKAIPMRAETGPIGGDLSH----EFIVLAETGESGVY 242 Query: 352 SCSTCGNF 359 N Sbjct: 243 IDRDVLNL 250 |
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A Length = 471 | Back alignment and structure |
---|
Score = 57.2 bits (137), Expect = 7e-09 Identities = 32/194 (16%), Positives = 62/194 (31%), Gaps = 16/194 (8%) Query: 139 REHFEIGEALGLMDF-DRATKLSGARFSVLTG--------HLAHLERALGQFMIDLHTSE 189 + H + L + D + F+ TG + AL + + H Sbjct: 7 KTHIDYAYELDITVKPDSRVPVFNREFATFTGAGVPLFSLGGGPIRYALAEVLAKFHA-R 65 Query: 190 HGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTTDGR---WLIPTSEVSLTNLYSHEIIE 246 GY V P++ E +G I + ++M+ + P + L+ +E+ + Sbjct: 66 RGYYVVETPIIASTELFKVSGHIEFYRNNMYLFDIEGHEFAVKPMNCPYHILLFLNEVAK 125 Query: 247 SKS---LPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERML 303 +S LP + R E + + Q +V R D + + Sbjct: 126 HRSKLPLPFKVFEFGRVHRYEPSGSIYGLLRVRGFTQDDAHIIVPGGRVIDVVYDVFEEM 185 Query: 304 SCAEEILKRLDLHY 317 E L +L + Sbjct: 186 KLVLERLFKLGVSS 199 |
Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 430 | seryl-tRNA synthetase [Candidatus Liberibacter asiaticu | ||
2dq0_A | 455 | Seryl-tRNA synthetase; coiled-coil, homodimer, structur | 100.0 | |
1wle_A | 501 | Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos tau | 100.0 | |
3lss_A | 484 | Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA | 100.0 | |
2dq3_A | 425 | Seryl-tRNA synthetase; coiled-coil, homodimer, structur | 100.0 | |
1ses_A | 421 | Seryl-tRNA synthetase; ligase(synthetase); HET: AHX AMP | 100.0 | |
3err_A | 536 | Fusion protein of microtubule binding domain from mouse | 100.0 | |
2cja_A | 522 | Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; | 100.0 | |
3mf2_A | 346 | BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA | 100.0 | |
1nj1_A | 501 | Proline-tRNA synthetase, proline--tRNA ligase; protein- | 100.0 | |
3ial_A | 518 | Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA | 99.93 | |
1hc7_A | 477 | Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP | 99.92 | |
1nj8_A | 459 | Proline-tRNA synthetase, proline--tRNA ligase; class-II | 99.92 | |
1nyr_A | 645 | Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET | 99.91 | |
1qf6_A | 642 | THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, zinc, | 99.91 | |
1evl_A | 401 | Threonyl-tRNA synthetase; amino acid recognition, zinc | 99.85 | |
2i4l_A | 458 | Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomona | 99.81 | |
3a32_A | 471 | Probable threonyl-tRNA synthetase 1; aeropyrum pernix K | 99.78 | |
2zt5_A | 693 | Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly | 99.18 | |
3ikl_A | 459 | DNA polymerase subunit gamma-2, mitochondrial; transfer | 99.09 | |
1ati_A | 505 | Glycyl-tRNA synthetase; protein biosynthesis, ligase, a | 98.83 | |
2j3l_A | 572 | Prolyl-tRNA synthetase; class II aminoacyl- tRNA synthe | 99.74 | |
1qe0_A | 420 | Histidyl-tRNA synthetase; class II tRNA synthetase, bet | 99.06 | |
3net_A | 465 | Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, li | 98.92 | |
1h4v_B | 421 | Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synt | 98.79 | |
1htt_A | 423 | Histidyl-tRNA synthetase; complex (tRNA synthetase/His- | 98.69 | |
3lc0_A | 456 | Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA s | 98.2 | |
1wu7_A | 434 | Histidyl-tRNA synthetase; ligase, structural genomics, | 98.13 | |
3od1_A | 400 | ATP phosphoribosyltransferase regulatory subunit; struc | 97.99 | |
3a5y_A | 345 | GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA sy | 97.01 | |
3dsq_A | 288 | Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA s | 99.61 | |
2zin_A | 291 | Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 99.06 | |
1eov_A | 487 | ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthet | 96.34 | |
1g5h_A | 454 | Mitochondrial DNA polymerase accessory subunit; intermo | 98.68 | |
1z7m_A | 344 | ATP phosphoribosyltransferase regulatory subunit; ATP-P | 97.68 | |
3bju_A | 521 | Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- | 97.05 | |
1e1o_A | 504 | Lysyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetas | 96.8 | |
3i7f_A | 548 | Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding | 96.74 | |
3a74_A | 493 | Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligas | 96.73 | |
1usy_A | 275 | ATP phosphoribosyltransferase regulatory subunit; amino | 96.47 | |
1x54_A | 434 | Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 96.47 | |
1wyd_A | 429 | Hypothetical aspartyl-tRNA synthetase; archaea, ligase; | 96.37 | |
3m4p_A | 456 | Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoac | 96.25 | |
1nnh_A | 294 | Asparaginyl-tRNA synthetase-related peptide; structural | 95.78 | |
1c0a_A | 585 | Aspartyl tRNA synthetase; protein-RNA complex, ligase/R | 95.49 | |
1l0w_A | 580 | Aspartyl-tRNA synthetase; space-grown crystal, dimeric | 95.41 | |
1n9w_A | 422 | Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A | 95.01 | |
2rhq_A | 294 | Phenylalanyl-tRNA synthetase alpha chain; heterotetrame | 97.63 | |
1b7y_A | 350 | Phers, protein (phenylalanyl-tRNA synthetase); enzyme, | 96.94 | |
2odr_A | 665 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthe | 97.58 | |
2odr_C | 701 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthe | 97.39 | |
2odr_B | 648 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthe | 97.31 | |
2odr_D | 685 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthe | 97.2 | |
3l4g_A | 508 | Phenylalanyl-tRNA synthetase alpha chain; aminoacylatio | 97.07 | |
2du7_A | 549 | O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase | 97.5 | |
2du3_A | 534 | O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase | 96.81 | |
1m1j_B | 464 | Fibrinogen beta chain; coiled coils, disulfide rings, f | 95.76 | |
1m1j_B | 464 | Fibrinogen beta chain; coiled coils, disulfide rings, f | 95.58 | |
3ghg_B | 461 | Fibrinogen beta chain; triple-stranded coiled coil, bet | 91.45 | |
3nem_A | 438 | Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligas | 95.7 | |
1m1j_C | 409 | Fibrinogen gamma chain; coiled coils, disulfide rings, | 93.79 | |
3ghg_A | 562 | Fibrinogen alpha chain; triple-stranded coiled coil, be | 93.39 | |
3ghg_A | 562 | Fibrinogen alpha chain; triple-stranded coiled coil, be | 90.55 | |
1deq_A | 390 | Fibrinogen (alpha chain); coiled-coil, blood clotting; | 90.32 | |
1gqe_A | 365 | Release factor 2, RF2; protein synthesis, ribosome, mac | 92.29 |
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A | Back alignment and structure |
---|
Probab=100.00 E-value=0 Score=1246.04 Aligned_cols=424 Identities=38% Similarity=0.636 Sum_probs=412.1 Q ss_pred CCCHHHHHCCHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH Q ss_conf 98844785199999999984698958---899999999999999999999999999999999986449987999999999 Q gi|254780680|r 1 MLDIQWIRQNPEHLDIALKKRHLEPQ---SEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQAIAEGNLSLVDALKNET 77 (430) Q Consensus 1 MLDik~IRen~e~v~~~l~~R~~~~~---id~il~Ld~~rr~l~~e~e~LraerN~lSKeIg~~k~~~~~~~~~~Lk~e~ 77 (430) |||||+||+||+.|++++++||.+.+ +|+++++|++||+++.++++||++||++||+||++++++++ ++++++++ T Consensus 1 MLDik~iRenpe~v~~~l~~R~~~~d~~~vd~ll~ld~~~r~l~~e~e~Lr~~rN~lSK~Ig~~kk~~~~--~~~l~~~~ 78 (455) T 2dq0_A 1 MLDIKLIRENPELVKNDLIKRGELEKVKWVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEP--VDELLAKS 78 (455) T ss_dssp CCCHHHHHHCHHHHHHHHHHHTCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC--THHHHHHH T ss_pred CCCHHHHHHCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--HHHHHHHH T ss_conf 9897887769999999998649963155799999999999999999999999999999999999867997--89999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCEEEEEECCCCCC--------------------CCC Q ss_conf 999988644466666778887744310022588112211355540242000156566--------------------566 Q gi|254780680|r 78 STLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTSANENILIRSVGKKPSA--------------------IHL 137 (430) Q Consensus 78 ~~Lk~eik~le~~~~~le~el~~lll~IPNi~~~~VP~G~de~dNv~i~~~G~~~~f--------------------~f~ 137 (430) ++|+++|+.+++++++++++++++++.|||+||++||+|.||+||++|++||++|.| +|+ T Consensus 79 ~~lk~~ik~le~~l~~l~~~l~~lll~iPNl~~~~VP~G~de~dN~~ir~~G~~~~f~~~~~~~~~~~~~~~~~~~~~f~ 158 (455) T 2dq0_A 79 REIVKRIGELENEVEELKKKIDYYLWRLPNITHPSVPVGKDENDNVPIRFWGKARVWKGHLERFLEQSQGKMEYEILEWK 158 (455) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTTSCCCSSGGGCEEEEEESCEEEEGGGHHHHHHHHTTCSCEEEESSC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 99999999999999999999999997276777866687888666646785057556555532111234555565667887 Q ss_pred CCCCCCHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHH Q ss_conf 62112202211731000112221675301056488999999999998622320320212356202788986551422476 Q gi|254780680|r 138 SREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFAD 217 (430) Q Consensus 138 ~k~H~elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~ 217 (430) |++|||||+.+|++||++|+|+||||||||+|+||+|||||+|||||++ .++||++|+||+|||+++|+||||+|+|++ T Consensus 159 ~k~H~el~e~l~liDfe~~akvsGsrf~~Lkg~~A~Le~ALi~f~ld~~-~~~Gy~~v~pP~iV~~~~~~gtGqlp~f~~ 237 (455) T 2dq0_A 159 PKLHVDLLEILGGADFARAAKVSGSRFYYLLNEIVILDLALIRFALDRL-IEKGFTPVIPPYMVRRFVEEGSTSFEDFED 237 (455) T ss_dssp CCCHHHHHHHTTCEESHHHHHHTCTTCCEEEHHHHHHHHHHHHHHHHHH-HHTTCEEEECCSEECHHHHHTTSCTTHHHH T ss_pred CCCHHHHHHHCCCCCHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHH-CCCCCEEECCCCCCCHHHHHHCCCCCCCHH T ss_conf 6769999877187314333212578647835808899999999999750-001654623861102788734268987601 Q ss_pred HHHHHH-HCCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHH Q ss_conf 776431-0002313454114544534205955504208853221078843355434321222210200212127865014 Q gi|254780680|r 218 DMFCTT-DGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSF 296 (430) Q Consensus 218 ~~y~~~-d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~ 296 (430) |+|+++ +|+||||||||||+|||+|++|+.++||+||+|+|||||+||||||||||||||||||+|||||+||+||+|+ T Consensus 238 ~~Y~i~~~dl~Li~TaEvpL~~~~~~eil~~~~LPik~~~~s~cFR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~s~ 317 (455) T 2dq0_A 238 VIYKVEDEDLYLIPTAEHPLAGMHANEILDGKDLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQFVYSRPEESW 317 (455) T ss_dssp TCCBBTTSSCEECSSTHHHHHHTTTTEEEETTTCSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEEEEECTTTHH T ss_pred CEEEECCCCEEECCCCCCCHHHHHHCCCCCHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHEEECCEEEEEEECCCCCCH T ss_conf 04785599757436443204444401325787789202465897886555578764012201221426899834897319 Q ss_pred HHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCCEEECCCCCCC Q ss_conf 57898999999999984106753037801178443402410110100483323753102100764532684733899841 Q gi|254780680|r 297 TEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYRDPNSKSL 376 (430) Q Consensus 297 ~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~~ 376 (430) ++|++|+.++++||++||||||||+|||||||++|+||||||||||||++|+||||||||||||||||||||+++.++++ T Consensus 318 ~~~e~~~~~~~~i~~~L~lpyrvv~~~s~dlg~~a~~k~DiE~w~P~~~~y~EvsS~Snc~DyQsRRl~iry~~~~~~~~ 397 (455) T 2dq0_A 318 EWHEKIIRNAEELFQELEIPYRVVNICTGDLGYVAAKKYDIEAWMPGQGKFREVVSASNCTDWQARRLNIRFRDRTDEKP 397 (455) T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEECCGGGSCSSCSEEEEEEEEETTTTEEEEEEEEEECTTTTHHHHTEEEESSTTSCC T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEEEEEECCCCCEEEEEEECCCCCHHHHCCCCEECCCCCCCC T ss_conf 99999999999999975996589881376678771218999988557786245746615435766133445126899963 Q ss_pred CEEEEECCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCEEEECCCC Q ss_conf 010420043228999999998834689983865822231018801307334 Q gi|254780680|r 377 KFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYMNNLAVIKKEH 427 (430) Q Consensus 377 ~~~htlNgt~~A~~R~l~ailEn~q~~dg~i~iP~~L~pym~g~~~i~~~~ 427 (430) +||||||||||||||+|+||||||||+||+|+||+||||||||.++|++.. T Consensus 398 ~~~HtlNgt~lav~R~l~ailEn~q~~dg~i~iP~~L~pymg~~~~~~~~~ 448 (455) T 2dq0_A 398 RYVHTLNSTAIATSRAIVAILENHQEEDGTVRIPKVLWKYTGFKEIVPVEK 448 (455) T ss_dssp EECEEEEEEEEEHHHHHHHHHHHSBCTTSCEECCGGGHHHHSCSEECCCC- T ss_pred EEEEECCCCCHHHHHHHHHHHHHCCCCCCCEECCHHHHHHCCCCEEECCCC T ss_conf 554533064018878999999847389986868854463459958841552 |
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} | Back alignment and structure |
---|
Probab=100.00 E-value=0 Score=1207.03 Aligned_cols=425 Identities=29% Similarity=0.494 Sum_probs=408.9 Q ss_pred CCCHHHHHCCHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH------HHHH Q ss_conf 9884478519999999998469895---889999999999999999999999999999999998644998------7999 Q gi|254780680|r 1 MLDIQWIRQNPEHLDIALKKRHLEP---QSEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQAIAEGNL------SLVD 71 (430) Q Consensus 1 MLDik~IRen~e~v~~~l~~R~~~~---~id~il~Ld~~rr~l~~e~e~LraerN~lSKeIg~~k~~~~~------~~~~ 71 (430) |||||+||+|||.|+++|++|++++ ++|+|+++|++||++++++++||++||++||+||++++++++ ++++ T Consensus 40 MLDik~Irenpe~v~~~l~~R~~~~~~~dld~il~ld~e~r~l~~e~e~Lr~erN~~sk~I~~l~~~~~~~~~~~~~e~e 119 (501) T 1wle_A 40 LLDMESLCAYPEDAARALDLRKGELRSKDLPGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQ 119 (501) T ss_dssp CCCHHHHHHSHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHH T ss_pred CCCHHHHHHCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCHHHHH T ss_conf 62799987699999999997289743342999999999999999999999999999999999998567751000368999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHCCCC Q ss_conf 99999999998864446666677888774431002258811221135554024200015656656662112202211731 Q gi|254780680|r 72 ALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTSANENILIRSVGKKPSAIHLSREHFEIGEALGLM 151 (430) Q Consensus 72 ~Lk~e~~~Lk~eik~le~~~~~le~el~~lll~IPNi~~~~VP~G~de~dNv~i~~~G~~~~f~f~~k~H~elge~l~li 151 (430) +|++++++|+++++.+++++++++++++.+++.|||+||++||+| +|++|++|++||++|.|+|+||+|||||+.+|++ T Consensus 120 ~L~~~~k~lk~~i~~le~~~~~l~~~l~~~ll~iPNi~~~~VP~G-~e~~n~vv~~~G~~~~f~f~pk~H~elge~l~li 198 (501) T 1wle_A 120 SLRARGREIRKQLTLLYPKEAQLEEQFYLRALRLPNQTHPDVPVG-DESQARVLHVVGDKPAFSFQPRGHLEIAEKLDII 198 (501) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTTCCCS-SGGGCEEEEEESCCCCCSSCCCCHHHHHHHHTCE T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCC T ss_conf 999999999999999999999999999999974899888557989-8776879840378647888852167776653120 Q ss_pred CHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHH-----HCC Q ss_conf 000112221675301056488999999999998622320320212356202788986551422476776431-----000 Q gi|254780680|r 152 DFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTT-----DGR 226 (430) Q Consensus 152 Dfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~-----d~l 226 (430) ||++|+||||||||||+|+||+|||||+|||+|++. ++||++|+||+|||+++|+||||+|+|++++|... +++ T Consensus 199 Dfe~aakvsGsrfy~LkG~~A~LerALi~f~ld~l~-~~Gy~~v~pP~iV~~~~~~gtGqlPkfe~~~~~~~~~~~~ddl 277 (501) T 1wle_A 199 RQKRLSHVSGHRSYYLRGAGALLQHGLVNFTLNKLI-HRGFTPMTVPDLLRGVVFEGCGMTPNAKPSQIYNIDPSRFEDL 277 (501) T ss_dssp ECTTCTTTTCTTCCEEETHHHHHHHHHHHHHHHHHH-HTTCEEEECCSEECHHHHHHHTCCSSSSSCSSCBBCTTTSSSC T ss_pred CHHHHHEECCCCEEEEECCHHHHHHHHHHHHHHHHH-HCCCEEEECHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCE T ss_conf 133200354787189828299999999999999755-2598899243550166775542484343122777404432220 Q ss_pred EECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCC--CCHHHHHHHHHH Q ss_conf 231345411454453420595550420885322107884335543432122221020021212786--501457898999 Q gi|254780680|r 227 WLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITRE--EDSFTEHERMLS 304 (430) Q Consensus 227 ~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~p--e~S~~~~e~~~~ 304 (430) ||||||||||+|||+|+||+.++||+||+|+|||||+||| +|||||||||||||+|||||+||+| |+|+++|++|+. T Consensus 278 ~LipTAEvpL~~~~~~eil~~~~LPik~~a~s~CFR~EAG-~GkdtrGl~RvHQF~KVE~f~~~~p~~e~s~~~~e~~l~ 356 (501) T 1wle_A 278 NLAGTAEVGLAGYFMDHSVAFRDLPIRMVCSSTCYRAETD-TGKEPWGLYRVHHFTKVEMFGVTGPGLEQSSELLEEFLS 356 (501) T ss_dssp EECSSHHHHHHHHHTTEEEEGGGCSEEEEEEEEEECCCCS-CC--CCSSSSCSEEEEEEEEEEECSSHHHHHHHHHHHHH T ss_pred EEECCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCEEEEECCCEEEEEEECCCCHHHHHHHHHHHH T ss_conf 0103223453202343203200087114312773055634-456776722566214268999836870133999999999 Q ss_pred HHHHHHHHHCCHHHHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCCEEECCCCCCCCEEEEECC Q ss_conf 99999998410675303780117844340241011010048332375310210076453268473389984101042004 Q gi|254780680|r 305 CAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNG 384 (430) Q Consensus 305 ~~~~i~~~L~lpyRvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~~~~~htlNg 384 (430) ++++||++||||||||+|||||||++|+||||||||||||++|+|||||||||||||||||||||+++++ ++||||||| T Consensus 357 ~~e~il~~L~LpyRvv~~~sgDLg~~a~kkyDiE~W~P~~~~y~EvsS~Snc~DfQaRRl~iry~~~~~k-~~~~HTLNg 435 (501) T 1wle_A 357 LQMEILTELGLHFRVLDMPTQELGLPAYRKFDIEAWMPGRGRFGEVTSASNCTDFQSRRLHIMFQTEAGE-LQFAHTVNA 435 (501) T ss_dssp HHHHHHHHTTCCEEEEECCGGGSTTTCSEEEEEEEEETTTTEEEEEEEEEECTTHHHHHHTCEEECSSSC-EEECEEEEE T ss_pred HHHHHHHHCCCCEEEEECCCCCCCHHHHHEEEEEEEECCCCCEEEEEEEECCCCHHHHHCCCEEECCCCC-EEEEEECCC T ss_conf 9999986448854998716777674344457689985588976778877031338663036644079998-556464437 Q ss_pred CHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCEEEECCCCCC Q ss_conf 322899999999883468998386582223101880130733457 Q gi|254780680|r 385 SGVAVGRCLIAILENYLNADGSVTIPTVLRPYMNNLAVIKKEHIL 429 (430) Q Consensus 385 t~~A~~R~l~ailEn~q~~dg~i~iP~~L~pym~g~~~i~~~~~~ 429 (430) |||||||+|+||||||||+||||+||+||||||||..+|.|++.+ T Consensus 436 T~lAv~R~l~ailEn~q~~dGsv~iP~~L~pymg~~~i~~p~~~p 480 (501) T 1wle_A 436 TGCAVPRLLIALLESYQQKDGSVLVPPALQPYLGTDRITTPTHVP 480 (501) T ss_dssp EEEEHHHHHHHHHHHHBCTTSCEECCGGGHHHHSSSEECCCSSCC T ss_pred CHHHHHHHHHHHHHHCCCCCCCEECCHHHHHHCCCCEECCCCCCC T ss_conf 415887899998873648998386781325464996752778887 |
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A* | Back alignment and structure |
---|
Probab=100.00 E-value=0 Score=1198.35 Aligned_cols=425 Identities=32% Similarity=0.537 Sum_probs=403.3 Q ss_pred CCCHHHHHC--CHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH---------- Q ss_conf 988447851--99999999984698958-89999999999999999999999999999999998644998---------- Q gi|254780680|r 1 MLDIQWIRQ--NPEHLDIALKKRHLEPQ-SEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQAIAEGNL---------- 67 (430) Q Consensus 1 MLDik~IRe--n~e~v~~~l~~R~~~~~-id~il~Ld~~rr~l~~e~e~LraerN~lSKeIg~~k~~~~~---------- 67 (430) |||||+||+ ||+.|++++++|+.+.+ +|+|+++|++||++++++|+||+++|.+||+||++++.++. T Consensus 7 MLDikliRe~~n~d~vre~lkkR~~d~dlVD~il~lD~~rR~l~~e~e~Lr~erN~iSK~Ig~~kk~~~~~~d~~~~~~~ 86 (484) T 3lss_A 7 VLDIQLFRDETGANIIRESQRRRFADPDIVDAIIEADKKWRRTQFLTEASKKLINICSKAVGAKKKAKEADGDTSEIPPQ 86 (484) T ss_dssp CCCGGGGGSHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC---------- T ss_pred ECCHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH T ss_conf 01189986589869999999874998789999999999999999999999999869999999998468754104454444 Q ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCC-CCCCEEEEEEC Q ss_conf -----------------799999999999998864446666677888774431002258811221135-55402420001 Q gi|254780680|r 68 -----------------SLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTS-ANENILIRSVG 129 (430) Q Consensus 68 -----------------~~~~~Lk~e~~~Lk~eik~le~~~~~le~el~~lll~IPNi~~~~VP~G~d-e~dNv~i~~~G 129 (430) .++++|++++++|+++|+.+++++.++++++++++++|||+||++||+|+| |++|++++.|| T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~Lk~~~k~Lk~~i~~le~~l~ele~~l~~lll~IPNiph~~VP~G~dee~~Nv~i~~~g 166 (484) T 3lss_A 87 VKEAYENGTLKGEQVEQLCVLQLKQLSKDLSDQVAGLAKEAQQLEEERDKLMLNVGNILHESVPIAQDEETGNTVVRTFG 166 (484) T ss_dssp ------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCTTSCCCSCHHHHCEEEEEES T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECC T ss_conf 43322100000001224469999999999999999999999999999999997289977865788875356718997458 Q ss_pred CCCCCCCCCCCCCCHHHHCCCCCHHHHH-HHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHH Q ss_conf 5656656662112202211731000112-221675301056488999999999998622320320212356202788986 Q gi|254780680|r 130 KKPSAIHLSREHFEIGEALGLMDFDRAT-KLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYG 208 (430) Q Consensus 130 ~~~~f~f~~k~H~elge~l~liDfe~a~-kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~g 208 (430) +++.| .+++|||||+.++++||++|+ |+||||||||+|+||+|||||+|||+|+|+ ++||++|+||+|||+++|+| T Consensus 167 ~~~~~--~~k~H~el~e~l~~iD~e~aaskvsGsrf~~lkg~~a~Le~ALi~y~ld~~~-~~Gy~~v~~P~lv~~~~~~g 243 (484) T 3lss_A 167 NTTKR--AKLNHVSIMERLGMMDTSKAVTSMAGGRSYVLKGGLVQLQVALVSYSLDFLV-KRGYTPFYPPFFLNRDVMGE 243 (484) T ss_dssp CTTCC--CSSCHHHHHHHTTCEECSHHHHHHHCTTCCEEEHHHHHHHHHHHHHHHHHHH-TTTCEEEECCSEEEHHHHHH T ss_pred CCCCC--CCCCHHHHHHHCCCCCHHHHCCCEECCCEEEECCCHHHHHHHHHHHHHHHHH-HCCCEEECCCHHHHHHHCCC T ss_conf 64666--7765667776558622244223100487489789802588999999999765-16974414863222220376 Q ss_pred HHHCHHHHHHHHHHH---HCCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEE Q ss_conf 551422476776431---00023134541145445342059555042088532210788433554343212222102002 Q gi|254780680|r 209 TGQIPKFADDMFCTT---DGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCE 285 (430) Q Consensus 209 tG~lp~f~~~~y~~~---d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE 285 (430) |||+|+|++++|++. +++||||||||||+|||+|++|++++||+||+|+|||||+||||||+|||||||||||+||| T Consensus 244 tG~lp~f~~~~y~i~~~~~~l~Li~TaEvpl~~~~~~eil~~~~LP~k~~~~s~cfR~EaGs~G~dtrGl~RvHQF~KVE 323 (484) T 3lss_A 244 VAQLSQFDEELYQVSGDGDKKYLIATSEMPIAAYHRGRWFTELKEPLKYAGMSTCFRKEAGAHGRDTLGIFRVHQFDKIE 323 (484) T ss_dssp HSCHHHHHHTCCEEESSSSCEEECSSTHHHHHHHTTTCEESCCSSCEEEEEEEEEECCCTTCSSSCCSTTSSCSEEEEEE T ss_pred CCCCCCCHHHCEEEECCCCCEEEECCCCCCHHHHHHHCEEHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEE T ss_conf 45776520104031026764246224666366666430102322876563018888854434466778705761134489 Q ss_pred EEECCCCC--CHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHH Q ss_conf 12127865--0145789899999999998410675303780117844340241011010048332375310210076453 Q gi|254780680|r 286 LVSITREE--DSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRR 363 (430) Q Consensus 286 ~~~~~~pe--~S~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrR 363 (430) ||+||+|+ +|+++|++|+.++++||+.||||||||+|||||||++|+||||||||||||++|+||||||||||||||| T Consensus 324 ~f~~~~p~~~~s~~~~e~~~~~~e~~~~~L~lpyrvv~~~sgdlg~~a~~k~DiE~W~P~~~~y~EvsS~Snc~DyQsrR 403 (484) T 3lss_A 324 QFVVCSPRQEESWRHLEDMITTSEEFNKSLGLPYRVVNICSGALNNAAAKKYDLEAWFPASGAFRELVSCSNCTDYQSQS 403 (484) T ss_dssp EEEEECSSTTHHHHHHHHHHHHHHHHHHHHTCCEEEEECCTTTCCSSCSEEEEEEEEETTTTEEEEEEEEEECTTHHHHH T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHEEEEEEEECCCCCEEEEEEECCCCCHHHHC T ss_conf 99984686122289999999999999985487069974058777822334688898866779757787742552376641 Q ss_pred CCCEEECC-----CCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCEEEECCCCCC Q ss_conf 26847338-----9984101042004322899999999883468998386582223101880130733457 Q gi|254780680|r 364 MNSRYRDP-----NSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYMNNLAVIKKEHIL 429 (430) Q Consensus 364 l~iry~~~-----~~~~~~~~htlNgt~~A~~R~l~ailEn~q~~dg~i~iP~~L~pym~g~~~i~~~~~~ 429 (430) ||||||+. .+++++||||||||||||||+|+||||||||+|| |+||+||||||||+++|+++..+ T Consensus 404 l~iry~~~~~~~~~~~~~~~~HtlNgt~~A~~R~l~ailEn~q~~dg-~~iP~~L~pym~g~~~i~~~~~~ 473 (484) T 3lss_A 404 VNCRYGPNLRGTAAQNVKEYCHMLNGTLCAITRTMCCICENYQTEEG-VVIPDVLRPYMMGIEMIRFENNA 473 (484) T ss_dssp HTCEESSCCC----CCSCEECEEEEEEEEEHHHHHHHHHHHHBCSSE-EECCGGGGGGTTTCCEEECCCC- T ss_pred CCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCEEECCCCCC T ss_conf 40501576555555677504575106300887899888873618997-18880005767997030688888 |
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus VF5} | Back alignment and structure |
---|
Probab=100.00 E-value=0 Score=1175.29 Aligned_cols=422 Identities=49% Similarity=0.825 Sum_probs=410.7 Q ss_pred CCCHHHHHCCHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH Q ss_conf 98844785199999999984698958--8999999999999999999999999999999999864499879999999999 Q gi|254780680|r 1 MLDIQWIRQNPEHLDIALKKRHLEPQ--SEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQAIAEGNLSLVDALKNETS 78 (430) Q Consensus 1 MLDik~IRen~e~v~~~l~~R~~~~~--id~il~Ld~~rr~l~~e~e~LraerN~lSKeIg~~k~~~~~~~~~~Lk~e~~ 78 (430) |||||+||+||+.|++++++||.+++ +|+|++||++||+++.++|+||++||.+||+||++++++++ +++++++++ T Consensus 1 MlDik~iRen~e~v~~~l~~R~~~~~~~id~il~Ld~~~r~l~~e~e~Lr~erN~iSKeIg~~kk~~~~--~~~l~~~~~ 78 (425) T 2dq3_A 1 MIDINLIREKPDYVKERLATRDKELVSLVDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKD--TTEIQNRVK 78 (425) T ss_dssp CCCHHHHHHCHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSC--TTTSTTHHH T ss_pred CCCHHHHHHCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--HHHHHHHHH T ss_conf 989788876999999999870998255599999999999999999999999999999999999867988--999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHCCCCCHHHHHH Q ss_conf 99988644466666778887744310022588112211355540242000156566566621122022117310001122 Q gi|254780680|r 79 TLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTSANENILIRSVGKKPSAIHLSREHFEIGEALGLMDFDRATK 158 (430) Q Consensus 79 ~Lk~eik~le~~~~~le~el~~lll~IPNi~~~~VP~G~de~dNv~i~~~G~~~~f~f~~k~H~elge~l~liDfe~a~k 158 (430) +|+++++.+++++++++++++++++.|||+||++||+|.+|++|++|++||++|.|+|+||||+|||+.+|++||++|+| T Consensus 79 ~lk~~i~~le~~~~~i~~~l~~~ll~IPNi~~~~VP~G~de~dN~~i~~~g~~~~~~f~~k~H~eig~~l~l~Df~~~~k 158 (425) T 2dq3_A 79 ELKEEIDRLEEELRKVEEELKNTLLWIPNLPHPSVPVGEDEKDNVEVRRWGEPRKFDFEPKPHWEIGERLGILDFKRGAK 158 (425) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCTTSCCCSSGGGCEEEEEESCCCCCSSCCCCHHHHHHHTTCEEHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHC T ss_conf 99999999999999999999999972789878888999872256788337888999989884999998739840566642 Q ss_pred HCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHH-HHCCEECCCCCCHHH Q ss_conf 2167530105648899999999999862232032021235620278898655142247677643-100023134541145 Q gi|254780680|r 159 LSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCT-TDGRWLIPTSEVSLT 237 (430) Q Consensus 159 vsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~-~d~l~Li~TaEvpL~ 237 (430) +||||||||+|+||+|||||+|||+|++. ++||++|+||+|||+++|+||||+|+|++++|++ ++++||||||||||+ T Consensus 159 vsGsrf~~l~g~~a~Le~ALi~y~ld~~~-~~Gy~~v~~P~lv~~~~~~gtG~lpkf~e~~y~~~~~~l~Li~TaEv~l~ 237 (425) T 2dq3_A 159 LSGSRFTVIAGWGARLERALINFMLDLHT-KKGYKEICPPHLVKPEILIGTGQLPKFEEDLYKCERDNLYLIPTAEVPLT 237 (425) T ss_dssp HHCSSCCEEETHHHHHHHHHHHHHHHHHH-HTTCEEEECCSEECHHHHHHHSCTTTTGGGSCBCTTTCCEECSSTHHHHH T ss_pred CCCCCEEEECCHHHHHHHHHHHHHHHHHH-HCCCEEECCCHHHHHHHHHHHCCCCCCHHHHHCCCCCCEEECCCCCCCHH T ss_conf 36776268628599999999999999998-77987743837668999864156742456530126886164144565088 Q ss_pred HHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCHH Q ss_conf 44534205955504208853221078843355434321222210200212127865014578989999999999841067 Q gi|254780680|r 238 NLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLHY 317 (430) Q Consensus 238 ~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~~~~~~i~~~L~lpy 317 (430) |||++++++.++||+||+|+|||||+||||||+|||||||||||+|||||+||+|++|+++|++|+.++++||++||||| T Consensus 238 ~~~~~~~~~~~~LP~r~~~~s~cfR~Eags~g~d~~Gl~RvhqF~kve~~~~~~~~~s~~~~~~~~~~~~~~~~~L~l~~ 317 (425) T 2dq3_A 238 NLYREEILKEENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVKIVHPDTSYDELEKLVKDAEEVLQLLGLPY 317 (425) T ss_dssp GGGTTEEEETTTCCEEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHHTCCE T ss_pred HHHCCEEECHHHCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 77335074175488403453787786655457677751543210023246641733589999999999999999716870 Q ss_pred HHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCCEEECCCCCCCCEEEEECCCHHHHHHHHHHHH Q ss_conf 53037801178443402410110100483323753102100764532684733899841010420043228999999998 Q gi|254780680|r 318 RVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAIL 397 (430) Q Consensus 318 Rvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~~~~~htlNgt~~A~~R~l~ail 397 (430) |||+|||||||++|+|||||||||||+++|+||||||||||||||||||||++.++++.+||||||||||||||+|+||| T Consensus 318 rvv~~~~~dlg~~~~~~~DiE~W~P~~~~y~Ev~S~Snc~DfqsrRl~iry~~~~~~~~~~~htlngt~~a~~R~l~ail 397 (425) T 2dq3_A 318 RVVELCTGDLGFSAAKTYDIEVWFPSQNKYREISSCSNCEDFQARRMNTRFKDSKTGKNRFVHTLNGSGLAVGRTLAAIL 397 (425) T ss_dssp EEEECCTTTCCTTCSEEEEEEEEEGGGTEEEEEEEEEECTTHHHHHHTEEEECTTTCSEEECEEEEEEEEEHHHHHHHHH T ss_pred EEEEECCCCCCCCCCEEECEEEEECCCCCEEEEEEECCHHHHHHHHCCCEEECCCCCCEEEEEEEECCCCHHHHHHHHHH T ss_conf 89996788888764257340777230084788988755255666546887665899951556774776208878999999 Q ss_pred HHCCCCCCCEECCCCCCCCCCCEEEECCC Q ss_conf 83468998386582223101880130733 Q gi|254780680|r 398 ENYLNADGSVTIPTVLRPYMNNLAVIKKE 426 (430) Q Consensus 398 En~q~~dg~i~iP~~L~pym~g~~~i~~~ 426 (430) |||||+||+|+||+|||||| |.++|.|+ T Consensus 398 En~q~~dg~v~iP~~L~~y~-g~~~i~p~ 425 (425) T 2dq3_A 398 ENYQQEDGSVVVPEVLRDYV-GTDVIRPE 425 (425) T ss_dssp HHTBCTTSCEECCTTTHHHH-SCSEECCC T ss_pred HHCCCCCCCEECCHHHHHHC-CCCCCCCC T ss_conf 73518998686882214035-99701679 |
>1ses_A Seryl-tRNA synthetase; ligase(synthetase); HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A | Back alignment and structure |
---|
Probab=100.00 E-value=0 Score=1124.72 Aligned_cols=418 Identities=35% Similarity=0.555 Sum_probs=401.7 Q ss_pred CCCHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH Q ss_conf 98844785199999999984698958899999999999999999999999999999999986449987999999999999 Q gi|254780680|r 1 MLDIQWIRQNPEHLDIALKKRHLEPQSEYILSLDEKNRILIKKIEDIRARRNSNSAQIGQAIAEGNLSLVDALKNETSTL 80 (430) Q Consensus 1 MLDik~IRen~e~v~~~l~~R~~~~~id~il~Ld~~rr~l~~e~e~LraerN~lSKeIg~~k~~~~~~~~~~Lk~e~~~L 80 (430) |||||+||+|||.|+++|++||.++++|+|++||++||+++.++++||++||++||+||+++ .++.+++++++++| T Consensus 1 MlDik~iR~n~e~v~~~l~~R~~~~dld~ll~Ld~~~r~l~~~~e~l~~~rN~lSK~I~k~k----~~~~~~l~~~~~~l 76 (421) T 1ses_A 1 MVDLKRLRQEPEVFHRAIREKGVALDLEALLALDREVQELKKRLQEVQTERNQVAKRVPKAP----PEEKEALIARGKAL 76 (421) T ss_dssp CCCHHHHHHCHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSC----HHHHHHHHHHHHHH T ss_pred CCCHHHHHHCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHH T ss_conf 98978887599999999986599706899999999999999999999999999999975325----15489999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHC Q ss_conf 98864446666677888774431002258811221135554024200015656656662112202211731000112221 Q gi|254780680|r 81 KEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTSANENILIRSVGKKPSAIHLSREHFEIGEALGLMDFDRATKLS 160 (430) Q Consensus 81 k~eik~le~~~~~le~el~~lll~IPNi~~~~VP~G~de~dNv~i~~~G~~~~f~f~~k~H~elge~l~liDfe~a~kvs 160 (430) +++++.+++++++++++++++++.|||+||++||+|.+|++| ++++||.+|.|+|++++|||||+.++++|+ +|+|+| T Consensus 77 k~~i~~le~~~~~~~~~l~~~ll~IPNlp~~~VP~G~de~~n-~i~~~~~~~~f~f~~k~H~ei~e~l~~~d~-~aakis 154 (421) T 1ses_A 77 GEEAKRLEEALREKEARLEALLLQVPLPPWPGAPVGGEEANR-EIKRVGGPPEFSFPPLDHVALMEKNGWWEP-RISQVS 154 (421) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCCCCTTSCSSSGGGCE-EEEEESCCCCCSSCCCCHHHHHHHHTCBCT-THHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC-CEEECCCCCCCCCCCCCHHHHHHHHHHHHH-HHHHHC T ss_conf 999999886799998877665302221232211124554433-023215775334122106888888654344-455432 Q ss_pred CCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHH-HHCCEECCCCCCHHHHH Q ss_conf 67530105648899999999999862232032021235620278898655142247677643-10002313454114544 Q gi|254780680|r 161 GARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCT-TDGRWLIPTSEVSLTNL 239 (430) Q Consensus 161 GsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~-~d~l~Li~TaEvpL~~~ 239 (430) |||||||+|+||+|||||+|||+|++. ++||+++.||+|||+++|+||||+|+|++|+|++ ++++||||||||||+|| T Consensus 155 Gsrf~~l~g~~A~LerALi~f~ld~~~-~~gy~e~~~P~lv~~~~~~gtG~lp~f~~d~y~~~~~~l~LipTaEv~l~~~ 233 (421) T 1ses_A 155 GSRSYALKGDLALYELALLRFAMDFMA-RRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIAETDLYLTGTAEVVLNAL 233 (421) T ss_dssp CSSCCCEETHHHHHHHHHHHHHHHHHH-HTTCEEEECCSEEEHHHHHHHTCTTTTGGGSCBBTTSSEEECSSTHHHHHHT T ss_pred CCCHHCCCCCEEEEEHHHHHHHHHHHH-CCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHH T ss_conf 411100069557751657899998740-0000023331455677775037886531023443113442102466306766 Q ss_pred HHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECC--CCCCHHHHHHHHHHHHHHHHHHHCCHH Q ss_conf 534205955504208853221078843355434321222210200212127--865014578989999999999841067 Q gi|254780680|r 240 YSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSIT--REEDSFTEHERMLSCAEEILKRLDLHY 317 (430) Q Consensus 240 ~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~--~pe~S~~~~e~~~~~~~~i~~~L~lpy 317 (430) |+|++++.++||+||+|+|||||+||||||+|||||||||||+|||||++| .|++|+++|++|+.++++||++|+||| T Consensus 234 ~~~~il~~~~LPlr~~~~s~cfR~EaGs~GkdtrGl~RvhQF~kvE~~~~~~~~~e~s~~~~~~~~~~~~~i~~~L~lpy 313 (421) T 1ses_A 234 HSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELPY 313 (421) T ss_dssp TTTCEEEGGGCSEEEEEEEEEECCCCSCCCSCCCTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCE T ss_pred HHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 41555446535732577447532223344521034433102455777786145430246799999999999986226731 Q ss_pred HHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCCEEECCCCCCCCEEEEECCCHHHHHHHHHHHH Q ss_conf 53037801178443402410110100483323753102100764532684733899841010420043228999999998 Q gi|254780680|r 318 RVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYRDPNSKSLKFTHTLNGSGVAVGRCLIAIL 397 (430) Q Consensus 318 Rvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry~~~~~~~~~~~htlNgt~~A~~R~l~ail 397 (430) |||++||||||++|++||||||||||+++|+||||||||+||||||++|||++++|+ ++||||||||++|+||+|+||| T Consensus 314 rvv~~~~~dlg~~a~~~~diE~w~P~~~~~~Evss~Sn~~d~qsrrl~i~y~~~~~~-~~~~htlngt~~a~~R~l~ail 392 (421) T 1ses_A 314 RLVEVATGDMGPGKWRQVDIEVYLPSEGRYRETHSCSALLDWQARRANLRYRDPEGR-VRYAYTLNNTALATPRILAMLL 392 (421) T ss_dssp EEEECCHHHHCTTCSEEEEEEEEETTTTEEEEEEEEEEEETHHHHHHTCEEECTTSC-EEECEEEEEEEEEETHHHHHHH T ss_pred HHHHCCCCCCCHHHHHHCCEEEEECCCCCEEEEEEECCCCHHHHHHCCCEEECCCCC-EEEEEECCCCCCHHHHHHHHHH T ss_conf 102227556775876321407886488967878212020038887615878889998-7866872476037889999999 Q ss_pred HHCCCCCCCEECCCCCCCCCCCEEEECCCC Q ss_conf 834689983865822231018801307334 Q gi|254780680|r 398 ENYLNADGSVTIPTVLRPYMNNLAVIKKEH 427 (430) Q Consensus 398 En~q~~dg~i~iP~~L~pym~g~~~i~~~~ 427 (430) ||||++||+|.||+|||||| |.++|.|.| T Consensus 393 E~~q~~dg~v~iP~~L~~ym-g~~~i~p~g 421 (421) T 1ses_A 393 ENHQLQDGRVRVPQALIPYM-GKEVLEPCG 421 (421) T ss_dssp HHHBCTTSCEECCGGGHHHH-SSSEECCCC T ss_pred HHCCCCCCCEECCHHHHCCC-CCCEEEECC T ss_conf 97358898880881201424-984354087 |
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} | Back alignment and structure |
---|
Probab=100.00 E-value=0 Score=1012.08 Aligned_cols=419 Identities=34% Similarity=0.546 Sum_probs=377.0 Q ss_pred CCCHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HH Q ss_conf 98844785199999999984698958899999999999999999999999999999----------------------99 Q gi|254780680|r 1 MLDIQWIRQNPEHLDIALKKRHLEPQSEYILSLDEKNRILIKKIEDIRARRNSNSA----------------------QI 58 (430) Q Consensus 1 MLDik~IRen~e~v~~~l~~R~~~~~id~il~Ld~~rr~l~~e~e~LraerN~lSK----------------------eI 58 (430) |-|++.+++.+|.+.+.+..+....+.+.++..+++...-+..+. .++....+ .| T Consensus 1 ~~~l~~~~~e~e~~~~~~~e~~~~~e~e~~~~~~e~~~~~~~~i~---~~~~~~~~dL~~a~P~l~~A~~al~~l~k~di 77 (536) T 3err_A 1 MVDLKRLRQEPEVFHRAIREKGVALDLEALLAVDEQLHKQQEVIA---DKQMSVKEDLDKVEPAVIEAQNAVKSIKKQHL 77 (536) T ss_dssp --CHHHHHSCHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH T ss_conf 900788777599999999999999999999989999999999999---99999999999835999999999964999789 Q ss_pred HHHHH---------------------------------------------------------------CC---C------ Q ss_conf 99864---------------------------------------------------------------49---9------ Q gi|254780680|r 59 GQAIA---------------------------------------------------------------EG---N------ 66 (430) Q Consensus 59 g~~k~---------------------------------------------------------------~~---~------ 66 (430) .++++ +. + T Consensus 78 ~Elks~~~PP~~V~~v~eaV~illg~~~~~W~~akk~l~~~~Fl~~L~~fdkd~I~~~~i~ki~k~yi~~~~F~~e~i~k 157 (536) T 3err_A 78 VEVRSMANPPAAVKLALESIALLLGESTTDWKQIRSIIMRENFIPTIVNFSAEEISDAIREKMKKNYMSNPSYNYEIVNR 157 (536) T ss_dssp HHHHTCSSCCHHHHHHHHHHHHHTTCSCCCHHHHTTGGGCTTHHHHHHHCCGGGCCHHHHHHHHHHTTTSTTCSHHHHHH T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHH T ss_conf 99972389967999999999999589999989999985735567887646921099999999999755687889999999 Q ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCEEEEEECCCC Q ss_conf --------------879999999999999886444666667788877443100225881122113555402420001565 Q gi|254780680|r 67 --------------LSLVDALKNETSTLKEQLPILEKEEHEVCSSLKKLISCIPNVPLEEVPIGTSANENILIRSVGKKP 132 (430) Q Consensus 67 --------------~~~~~~Lk~e~~~Lk~eik~le~~~~~le~el~~lll~IPNi~~~~VP~G~de~dNv~i~~~G~~~ 132 (430) .....++.++++.++++|+.+++++.+++++++++++.|||+||++||+|.+| +|++|++||++| T Consensus 158 ~S~Aa~~L~~WV~A~~~y~~v~k~v~plk~eL~elE~el~e~e~~l~~~ll~lPNi~~~~vP~G~~e-~n~~v~~~g~~~ 236 (536) T 3err_A 158 ASLAAGPMVKWAIAQLNYADMLKRVEPLRNELQKLEDDAKDNQQKLEALLLQVPLPPWPGAPVGGEE-ANREIKRVGGPP 236 (536) T ss_dssp HCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCTTSCCSSGG-GCEEEEEESCCC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-CCEEEEEECCCC T ss_conf 8899999999998874499999998766888999998888888999889862258707888999986-786999968988 Q ss_pred CCCCCCCCCCCHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHC Q ss_conf 66566621122022117310001122216753010564889999999999986223203202123562027889865514 Q gi|254780680|r 133 SAIHLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQI 212 (430) Q Consensus 133 ~f~f~~k~H~elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~l 212 (430) .|+|+|++|++||+.+|++| ++|+|+||||||||+|+||+|||||+|||+|++ .++||++++||+|||+++|+||||+ T Consensus 237 ~~~f~pk~H~el~~~l~l~d-~~a~kvsGsrfy~l~g~~A~Le~AL~~f~ld~~-~~~gy~~v~~P~~v~~~~~~gtG~l 314 (536) T 3err_A 237 EFSFPPLDHVALMEKNGWWE-PRISQVSGSRSYALKGDLALYELALLRFAMDFM-ARRGFLPMTLPSYAREKAFLGTGHF 314 (536) T ss_dssp CCSSCCCCHHHHHHHHTCBC-TTHHHHHCSSCCCEEHHHHHHHHHHHHHHHHHH-HHTTCEEEECCSEEEHHHHHHHTCT T ss_pred CCCCCCCCHHHHHHHCCCCC-HHHHEECCCCEEEEECHHHHHHHHHHHHHHHHH-HHCCCCHHHCHHHHHHHHHHHHCCC T ss_conf 98999879999963534615-344333178769993859999999999999999-7604502301022246655222478 Q ss_pred HHHHHHHHHH-HHCCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCC Q ss_conf 2247677643-100023134541145445342059555042088532210788433554343212222102002121278 Q gi|254780680|r 213 PKFADDMFCT-TDGRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITR 291 (430) Q Consensus 213 p~f~~~~y~~-~d~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~ 291 (430) |+|++++|.+ ++++||||||||||+|||++++++.++||+||+|+|||||+||||||+|||||||||||+|||||++|+ T Consensus 315 p~f~~~~y~~~~~~~~LipTaEv~l~~~~~~~i~~~~~LP~~~~~~s~cfR~Eag~~g~dtrGL~RvhQF~KvE~~~~~~ 394 (536) T 3err_A 315 PAYRDQVWAIAETDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTE 394 (536) T ss_dssp TTTGGGCCEETTTTEEECSSTHHHHHHHTTTCEEEGGGCSEEEEEEEEEECCCTTCTTSSCSTTSSCSEEEEEEEEEEEC T ss_pred CCCHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCEEEEEEEEECC T ss_conf 53024555420023101566642034454075474865897655469824555565575442133313431489998536 Q ss_pred C--CCHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHCCCHHHEEEEEEEECCCCCCEEEEEEECCCCCHHHHHCCCEEE Q ss_conf 6--50145789899999999998410675303780117844340241011010048332375310210076453268473 Q gi|254780680|r 292 E--EDSFTEHERMLSCAEEILKRLDLHYRVVSLCTGDLGFSACKTYDLEVWLAGQNLYREISSCSTCGNFQSRRMNSRYR 369 (430) Q Consensus 292 p--e~S~~~~e~~~~~~~~i~~~L~lpyRvv~~~sgdlg~~a~~~~DiE~w~P~~~~y~Ev~S~Snc~D~QsrRl~iry~ 369 (430) | ++|+.+|++|+.++++||+.|+||||||++||||||++|++||||||||||+++|+||||||||+|||||||||||+ T Consensus 395 ~~~e~s~~~~~~~l~~~e~i~~~L~lpyrvv~~~~~dlg~~a~~kyDiE~w~P~~~~y~Ev~S~Snc~DfqsrRl~iry~ 474 (536) T 3err_A 395 ASLEASDRAFQELLENAEEILRLLELPYRLVEVATGDMGPGKWRQVDIEVYLPSEGRYRETHSCSALLDWQARRANLRYR 474 (536) T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCTTTSCTTCSEEEEEEEEEGGGTEEEEEEEEEEEETHHHHHHTCEEE T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHCCEEEEECCCCCEEEEECHHCHHHHHHHHCCCEEE T ss_conf 51345799999999999999742488559996777768867875245189854879877573110101188885478888 Q ss_pred CCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCEEEECCCC Q ss_conf 3899841010420043228999999998834689983865822231018801307334 Q gi|254780680|r 370 DPNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYMNNLAVIKKEH 427 (430) Q Consensus 370 ~~~~~~~~~~htlNgt~~A~~R~l~ailEn~q~~dg~i~iP~~L~pym~g~~~i~~~~ 427 (430) +++|+ .+||||||||+||+||+|+|||||||++||+|.||+|||||| |.++|+|.. T Consensus 475 ~~~g~-~~~~htlngt~~a~~R~l~ailEn~q~~dg~i~iP~~L~~y~-~~~~i~p~~ 530 (536) T 3err_A 475 DPEGR-VRYAYTLNNTALATPRILAMLLENHQLQDGRVRVPQALIPYM-GKEVLEPGA 530 (536) T ss_dssp CTTSC-EEECEEEEEEEEEETHHHHHHHHHHBCTTSCEECCGGGHHHH-TSSEECCC- T ss_pred CCCCC-EEEEEEECCCCHHHHHHHHHHHHHCCCCCCCEECCHHHHCCC-CCCEECCCC T ss_conf 89998-874688207510888999999996569999884882322424-996545663 |
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A | Back alignment and structure |
---|
Probab=100.00 E-value=0 Score=433.06 Aligned_cols=300 Identities=17% Similarity=0.171 Sum_probs=258.3 Q ss_pred HHCCCCCCCHHHHC----CCCCCCEEEEEECCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHH Q ss_conf 10022588112211----35554024200015656656662112202211731000112221675301056488999999 Q gi|254780680|r 103 SCIPNVPLEEVPIG----TSANENILIRSVGKKPSAIHLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERAL 178 (430) Q Consensus 103 l~IPNi~~~~VP~G----~de~dNv~i~~~G~~~~f~f~~k~H~elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~AL 178 (430) -++.|++..++|.. ++|..+ ++... .++.+.|. .+|.+++++++++. +.+|+|++++.+.||+|.||| T Consensus 166 ~ri~~l~~~~~~~~~~~~~~e~~~-~~~e~-~~r~~~~~-~d~~~~~~~~g~i~-----~~~~~G~~~~~p~g~~L~raL 237 (522) T 2cja_A 166 DRILTLLEEKIEAAQYGAKAEHWN-LLWQR-EPMEHPFK-EDPTQAMMKEGWLK-----RGSSRGQWIHGPQSARIFRTF 237 (522) T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCC-EEEEC-CCCCCCCC-SCHHHHHHHTTSEE-----ECSSTTCEEECHHHHHHHHHH T ss_pred HHHHHHCCCCHHHHCCCCCHHHHH-HHHHC-CCCCCCCC-CCHHHHHHHCCCCH-----HCCCCCEEEECCHHHHHHHHH T ss_conf 998753023055523555166777-76431-22233112-78899998647600-----147686389866799999999 Q ss_pred HHHHHHHHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHH----------------------------------HH Q ss_conf 99999862232032021235620278898655142247677643----------------------------------10 Q gi|254780680|r 179 GQFMIDLHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCT----------------------------------TD 224 (430) Q Consensus 179 i~y~ld~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~----------------------------------~d 224 (430) .+|++|.+..+.||++|.+|.|++.+++++|||+|.|.++||.+ ++ T Consensus 238 e~~~~e~~~~k~G~~ev~~P~li~~el~~~sGh~~~f~~~m~~V~~~~~~~~~~~e~~~~~~~~~~e~~~~~~~~~~~~~ 317 (522) T 2cja_A 238 EKIVLEELLEPLGYREMIFPKLVTWEVWMKSGHAKGVYPEIYYVCPPQTRDPDYWEEVADYYKVTHEVPTKLIKEKIAEP 317 (522) T ss_dssp HHHHHHHTHHHHTCEECBCCSEEEHHHHHHHTGGGTCGGGCCEEECBSCCCHHHHHHHHHHHHHHSSCCHHHHHHHBCCC T ss_pred HHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCCCCCCHHHEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCC T ss_conf 99999998886398798788633799995478856674643563256655410111221110012334321110114566 Q ss_pred CCEECCCCCCHHHHHHHHHCCCHHHHCCEEEEEEC-CCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHH Q ss_conf 00231345411454453420595550420885322-10788433554343212222102002121278650145789899 Q gi|254780680|r 225 GRWLIPTSEVSLTNLYSHEIIESKSLPLRFTTLAP-SFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERML 303 (430) Q Consensus 225 ~l~Li~TaEvpL~~~~~~~~l~~~~LPik~~~~s~-cfR~EaGs~GkdtrGl~RvHQF~KVE~~~~~~pe~S~~~~e~~~ 303 (430) +++|.||+|+|++++|+++++++.+||+||+++|+ |||.|+|+ ++||+|||||+|+|++.+|+||++.+++++|+ T Consensus 318 ~y~L~Pt~c~~~~~~~~~~~~s~~dLPlk~~~~s~~~fR~E~g~----~~Gl~Rv~eF~~~E~~~~~t~e~~~e~~~~~l 393 (522) T 2cja_A 318 IGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYESGG----IHGIERVDEFHRIEIVWIGTKEEVLKCAEELH 393 (522) T ss_dssp CEEECSSSSGGGGGGTTTCEECGGGCSEEEEECSSEEECCCSSS----CCCTTSCSEEEEEEEEEEEEHHHHHHHHHHHH T ss_pred CEEECCCCCHHHHHHHHCCCCCCCCCCHHHHHCCCEEEEECCCC----CCCCCEEEEEEEEEEEEEECHHHHHHHHHHHH T ss_conf 56660577199999971863570002488874040268745778----77550246778643999956888999999999 Q ss_pred HHHHHHHH-HHCCHHHHCCCC---------CHHCCCHHHEEEEEEEECCCC---CCEEEEEEECCCCCHHHHHCCCEEEC Q ss_conf 99999999-841067530378---------011784434024101101004---83323753102100764532684733 Q gi|254780680|r 304 SCAEEILK-RLDLHYRVVSLC---------TGDLGFSACKTYDLEVWLAGQ---NLYREISSCSTCGNFQSRRMNSRYRD 370 (430) Q Consensus 304 ~~~~~i~~-~L~lpyRvv~~~---------sgdlg~~a~~~~DiE~w~P~~---~~y~Ev~S~Snc~D~QsrRl~iry~~ 370 (430) +.+.++|. .|+||||++..+ .+++++++..+||+|+|+|++ ++|.||+||++|+||||+|++|+. T Consensus 394 ~~~~~if~~~L~L~~r~v~~~~~~~~~~~~~~~~~~~~~~~yd~E~~lP~~~~~~k~~ev~si~~~gd~~skrf~ik~-- 471 (522) T 2cja_A 394 DRYMHIFNDILDIEWRKARVTPWFMAQEGLLGLAEENTVGTTDYEACLPYRGPDGEWLEFQNVSINGDKYPKGFNVKL-- 471 (522) T ss_dssp HHHHHHHHHTSCCCEEEEEC----------------CCCEEEEEEECCGGGCTTCCCEEEEEEEECTTHHHHHHTCEE-- T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCCCCHHCCCCC-- T ss_conf 999999999709845993256544566555112335621240238854256778871899866264342637309738-- Q ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCEEE Q ss_conf 8998410104200432289999999988346899838658222310188013 Q gi|254780680|r 371 PNSKSLKFTHTLNGSGVAVGRCLIAILENYLNADGSVTIPTVLRPYMNNLAV 422 (430) Q Consensus 371 ~~~~~~~~~htlNgt~~A~~R~l~ailEn~q~~dg~i~iP~~L~pym~g~~~ 422 (430) .+ .+++|| +++|+++.|+++|+||+|+...+ ..|+++|+|+|+... T Consensus 472 ~~---~~~v~~-~c~GiGleR~i~alle~~g~d~~--~WP~~i~~~vg~~~~ 517 (522) T 2cja_A 472 QS---GDELWS-GCSGVGLERWAAVFLAQKGLDPA--NWPEEFRNRVGEMPK 517 (522) T ss_dssp TT---CCCEEE-EEEEEEHHHHHHHHHHHHCSCGG--GSCHHHHHHHCSCCC T ss_pred CC---CCEEEE-ECCCHHHHHHHHHHHHHCCCCCC--CCCHHHHHHHCCCCC T ss_conf 99---998999-37672999999999996599999--988699998648561 |
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* | Back alignment and structure |
---|
Probab=100.00 E-value=0 Score=406.53 Aligned_cols=285 Identities=16% Similarity=0.173 Sum_probs=245.6 Q ss_pred CCCCCCCHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHH Q ss_conf 02258811221135554024200015656656662112202211731000112221675301056488999999999998 Q gi|254780680|r 105 IPNVPLEEVPIGTSANENILIRSVGKKPSAIHLSREHFEIGEALGLMDFDRATKLSGARFSVLTGHLAHLERALGQFMID 184 (430) Q Consensus 105 IPNi~~~~VP~G~de~dNv~i~~~G~~~~f~f~~k~H~elge~l~liDfe~a~kvsGsrF~~Lkg~~A~Le~ALi~y~ld 184 (430) +|+..|..||+.+ ++|.+.+ ..|.++++.++.+|+++|++.+++||+++++.+++||+++.. T Consensus 15 vprgs~~~~~~~~------------~~p~~a~--~~~~~l~~~~~~~~~~~ga~g~y~~~~~~~~v~~~le~~i~~---- 76 (346) T 3mf2_A 15 VPRGSHMNIAVLP------------NSPDTAP--QIADPLDHLADKLFHSMGSDGVYARTALYESIVERLAALITS---- 76 (346) T ss_dssp ------------------------------------CCTTGGGHHHHEEEEEETTEEEEEHHHHHHHHHHHHHHHH---- T ss_pred CCCCCCCCCEECC------------CCCCCCC--CCCHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHH---- T ss_conf 6578866540137------------8986456--640689999852222216755564289999999999999999---- Q ss_pred HHHHHCCCCEEHHHHHCCHHHHHHHHHCHHHHHHHHHHH----------------------------HCCEECCCCCCHH Q ss_conf 622320320212356202788986551422476776431----------------------------0002313454114 Q gi|254780680|r 185 LHTSEHGYTEVSAPLLVRDEAMYGTGQIPKFADDMFCTT----------------------------DGRWLIPTSEVSL 236 (430) Q Consensus 185 ~~~~~~Gy~~v~~P~lv~~~~~~gtG~lp~f~~~~y~~~----------------------------d~l~Li~TaEvpL 236 (430) + .++||+++..|.+++.+.+++||++++|.+++|.+. .+++|+||+|+++ T Consensus 77 -~-~~~G~~~v~~P~l~~~e~~~~sg~~~~f~~~~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~Pt~c~~i 154 (346) T 3mf2_A 77 -H-REAGTEALRFPPVMSRAQLEKSGYLKSFPNLLGCVCGLHGTEREINAAVSRFDAGGDWTTSLSPADLVLSPAACYPV 154 (346) T ss_dssp -T-CCTTCEEEECCSEEEHHHHHHTTHHHHCGGGCEEEEEECSCHHHHHHHHHHHHTTSCGGGGEEEEEEEECSSSSTTH T ss_pred -H-HHCCCEEEECCCEECHHHHHHCCCHHHCHHHEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCHHH T ss_conf -9-97798698688543499997548621043340684136775201222110012344311134776568707871888 Q ss_pred HHHHHHHCCCHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCH Q ss_conf 54453420595550420885322107884335543432122221020021212786501457898999999999984106 Q gi|254780680|r 237 TNLYSHEIIESKSLPLRFTTLAPSFRSEAGSAGRDTRGMLRQHQFWKCELVSITREEDSFTEHERMLSCAEEILKRLDLH 316 (430) Q Consensus 23 |