254780703

254780703

putative phosphate transport system protein

GeneID in NCBI database:8209707Locus tag:CLIBASIA_02950
Protein GI in NCBI database:254780703Protein Accession:YP_003065116.1
Gene range:+(563455, 564144)Protein Length:229aa
Gene description:putative phosphate transport system protein
COG prediction:[P] Phosphate uptake regulator
KEGG prediction:phoU; putative phosphate transport system protein; K02039 phosphate transport system protein
SEED prediction:Phosphate transport system regulatory protein PhoU
Pathway involved in KEGG:not defined
Subsystem involved in SEED:High affinity phosphate transporter and control of PHO regulon;
Phosphate metabolism
sequencesequence profile

Prediction of Local Sequence Properties

SourceSummaryResult
scaler
NCBI Databasesequence
PSIPREDsecondary structure
SSPROsecondary structure
DISEMBLcoil and loop
DISEMBLflexible loop
SEGlow complexity
DISOPREDdisordered
DISEMBLmissing residues
DISPROdisordered
TMHMMnone TM-Helix
TOPPREDnone TM-Helix
HMMTOPnone TM-Helix
MEMSATnone TM-Helix
MEMSAT_SVMnone TM-Helix
PHOBIUSnone TM-Helix
SignalP_HMMno
SignalP_NNno
COILScoiled coil
70% MSAconservation map
90% MSAconservation map
  
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23
MSCHILSAYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDKAIITIAKRQPMASDLREIVGSIKIAADLERIGDLAKNTAKRVLALQMFGVPRKLVWTIEPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMEDPRNITLCTHLLFCSKNIERIGDHVTNIAETIHYMTTGVQPYKERVRKEDCE
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccc
cccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccccccccccccc
MSCHILSAYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDKAIITIAKRQPMASDLREIVGSIKIAADLERIGDLAKNTAKRVLALQMFgvprklvwtiEPLAELSLEQLSEILDVygsrstektqSICNRDGELDAMHTSLFRELLTYMmedprnitlcthLLFCSKNIERIGDHVTNIAETIHYMttgvqpykervrkedce
MSCHILSAYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGdtvlahkvidndvVLDQLERDIGDKAIItiakrqpmasdLREIVGSIKIAADLERIGDLAKNTAKRVLALQMFGVPRKLVWTIEPLAELSLEQLSEILDVYgsrstektqsicnrdgeldAMHTSLFRELLTYMMEDPRNITLCTHLLFCSKNIERIGDHVTNIAETIHymttgvqpykervrkedce
MSCHILSAYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDKAIITIAKRQPMASDLREIVGSIKIAADLERIGDLAKNTAKRVLALQMFGVPRKLVWTIEPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMEDPRNITLCTHLLFCSKNIERIGDHVTNIAETIHYMTTGVQPYKERVRKEDCE
**CHILSAYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDKAIITIAKRQPMASDLREIVGSIKIAADLERIGDLAKNTAKRVLA***********WTIEPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMEDPRNITLCTHLLFCSKNIERIGDHVTNIAETIHYMTTGV*************
MSCHILSAYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDKAIITIAKRQPMASDLREIVGSIKIAADLERIGDLAKNTAKRVLALQMFGVPRKLVWTIEPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMEDPRNITLCTHLLFCSKNIERIGDHVTNIAETIHYMTTGVQPY**********
*SCHILSAYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDKAIITIAKRQPMASDLREIVGSIKIAADLERIGDLAKNTAKRVLALQMFGVPRKLVWTIEPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMEDPRNITLCTHLLFCSKNIERIGDHVTNIAETIHYMTTGV*************
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MSCHILSAYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDKAIITIAKRQPMASDLREIVGSIKIAADLERIGDLAKNTAKRVLALQMFGVPRKLVWTIEPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMEDPRNITLCTHLLFCSKNIERIGDHVTNIAETIHYMTTGVQPYKERVRKEDCE
MSCHILSAYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDKAIITIAKRQPMASDLREIVGSIKIAADLERIGDLAKNTAKRVLALQMFGVPRKLVWTIEPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMEDPRNITLCTHLLFCSKNIERIGDHVTNIAETIHYMTTGVQPYKERVRKEDCE
MSCHILSAYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDKAIITIAKRQPMASDLREIVGSIKIAADLERIGDLAKNTAKRVLALQMFGVPRKLVWTIEPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMEDPRNITLCTHLLFCSKNIERIGDHVTNIAETIHYMTTGVQPYKERVRKEDCE

Close Homologs Detected by BLAST or PSI-BLAST

Homolog within the Genome Detected by BLAST

Original result of BLAST against C. L. asiaticus genome

No hits with e-value below 0.05

Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations

Original result of PSI-BLAST first 2 iterations

IdentityAlignment graphLength Definition Round E-value
Target229 putative phosphate transport system protein [Candidatus
315121868229 putative phosphate transport system protein [Candidatus 1 1e-118
116250318237 phosphate transport system protein [Rhizobium leguminos 1 2e-88
222084783237 phosphate transport system regulatory protein PhoU [Agr 1 6e-88
241202936237 phosphate uptake regulator, PhoU [Rhizobium leguminosar 1 7e-88
209547781237 phosphate uptake regulator, PhoU [Rhizobium leguminosar 1 3e-87
86356167237 phosphate uptake transcriptional regulator protein [Rhi 1 4e-87
307307004266 phosphate uptake regulator, PhoU [Sinorhizobium melilot 1 1e-85
150395351237 phosphate uptake regulator PhoU [Sinorhizobium medicae 1 2e-85
222147388235 phosphate transport system regulatory protein PhoU [Agr 1 2e-85
325291857241 phosphate transport system regulatory protein [Agrobact 1 2e-85
>gi|315121868|ref|YP_004062357.1| putative phosphate transport system protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 229 Back     alignment and organism information
 Score =  427 bits (1098), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 205/229 (89%), Positives = 220/229 (96%)

Query: 1   MSCHILSAYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLE 60
           MSCHILSAYDEELDFLS RIVEMG++SR+MVDSSVRAFIEGD VLAHKVIDND+VLDQL+
Sbjct: 1   MSCHILSAYDEELDFLSHRIVEMGVISRRMVDSSVRAFIEGDAVLAHKVIDNDIVLDQLK 60

Query: 61  RDIGDKAIITIAKRQPMASDLREIVGSIKIAADLERIGDLAKNTAKRVLALQMFGVPRKL 120
           RDIGDKAIITIAKRQPMASDLREIVGSI+IAADLERIGDLAKNTAKRVLALQMFGVPRKL
Sbjct: 61  RDIGDKAIITIAKRQPMASDLREIVGSIRIAADLERIGDLAKNTAKRVLALQMFGVPRKL 120

Query: 121 VWTIEPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMEDPR 180
           V  IEPLA+LSLEQ+SEIL+VYG+RS EKTQ IC+RDGELDAMHTSLFR+LLTYMMEDPR
Sbjct: 121 VLAIEPLADLSLEQISEILEVYGNRSIEKTQLICSRDGELDAMHTSLFRKLLTYMMEDPR 180

Query: 181 NITLCTHLLFCSKNIERIGDHVTNIAETIHYMTTGVQPYKERVRKEDCE 229
           NI LCTHLLFCSKNIERIGDHVTNIAETIHYMTTG+QP+ E +RKEDCE
Sbjct: 181 NIILCTHLLFCSKNIERIGDHVTNIAETIHYMTTGIQPHIEGLRKEDCE 229



Species: Candidatus Liberibacter solanacearum
Genus: Candidatus Liberibacter
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria
>gi|116250318|ref|YP_766156.1| phosphate transport system protein [Rhizobium leguminosarum bv. viciae 3841] Length = 237 Back     alignment and organism information
>gi|222084783|ref|YP_002543312.1| phosphate transport system regulatory protein PhoU [Agrobacterium radiobacter K84] Length = 237 Back     alignment and organism information
>gi|241202936|ref|YP_002974032.1| phosphate uptake regulator, PhoU [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 237 Back     alignment and organism information
>gi|209547781|ref|YP_002279698.1| phosphate uptake regulator, PhoU [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 237 Back     alignment and organism information
>gi|86356167|ref|YP_468059.1| phosphate uptake transcriptional regulator protein [Rhizobium etli CFN 42] Length = 237 Back     alignment and organism information
>gi|307307004|ref|ZP_07586743.1| phosphate uptake regulator, PhoU [Sinorhizobium meliloti BL225C] Length = 266 Back     alignment and organism information
>gi|150395351|ref|YP_001325818.1| phosphate uptake regulator PhoU [Sinorhizobium medicae WSM419] Length = 237 Back     alignment and organism information
>gi|222147388|ref|YP_002548345.1| phosphate transport system regulatory protein PhoU [Agrobacterium vitis S4] Length = 235 Back     alignment and organism information
>gi|325291857|ref|YP_004277721.1| phosphate transport system regulatory protein [Agrobacterium sp. H13-3] Length = 241 Back     alignment and organism information

Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch

Conserved Domains in CDD Database Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Original result of RPS-BLASTagainst CDD database part II

IdentityAlignment graphLength Definition E-value
Target229 putative phosphate transport system protein [Candidatus
TIGR02135212 TIGR02135, phoU_full, phosphate transport system regula 2e-54
PRK11115236 PRK11115, PRK11115, transcriptional regulator PhoU; Pro 5e-33
COG1283533 COG1283, NptA, Na+/phosphate symporter [Inorganic ion t 5e-04
COG0704240 COG0704, PhoU, Phosphate uptake regulator [Inorganic io 8e-42
pfam0189587 pfam01895, PhoU, PhoU domain 7e-15
pfam0189587 pfam01895, PhoU, PhoU domain 2e-11
>gnl|CDD|162721 TIGR02135, phoU_full, phosphate transport system regulatory protein PhoU Back     alignment and domain information
>gnl|CDD|182974 PRK11115, PRK11115, transcriptional regulator PhoU; Provisional Back     alignment and domain information
>gnl|CDD|31474 COG1283, NptA, Na+/phosphate symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|31048 COG0704, PhoU, Phosphate uptake regulator [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|145194 pfam01895, PhoU, PhoU domain Back     alignment and domain information
>gnl|CDD|145194 pfam01895, PhoU, PhoU domain Back     alignment and domain information

Conserved Domains in CDD Database Detected by HHsearch

Original result of HHsearch against CDD database

IdentityAlignment graphLength Definition Probability
Target 229 putative phosphate transport system protein [Candidatus
PRK11115236 transcriptional regulator PhoU; Provisional 100.0
TIGR02135213 phoU_full phosphate transport system regulatory protein 100.0
COG0704240 PhoU Phosphate uptake regulator [Inorganic ion transpor 100.0
COG1283533 NptA Na+/phosphate symporter [Inorganic ion transport a 99.92
pfam01865214 PhoU_div Protein of unknown function DUF47. This family 98.96
COG1392217 Phosphate transport regulator (distant homolog of PhoU) 98.78
TIGR00153229 TIGR00153 conserved hypothetical protein TIGR00153; Int 91.54
TIGR02135213 phoU_full phosphate transport system regulatory protein 99.35
PRK11115236 transcriptional regulator PhoU; Provisional 99.19
COG0704240 PhoU Phosphate uptake regulator [Inorganic ion transpor 99.16
pfam0189587 PhoU PhoU domain. This family contains phosphate regula 99.12
COG3273204 Uncharacterized conserved protein [Function unknown] 98.46
pfam0189587 PhoU PhoU domain. This family contains phosphate regula 99.17
COG1283533 NptA Na+/phosphate symporter [Inorganic ion transport a 98.28
COG3273204 Uncharacterized conserved protein [Function unknown] 97.7
pfam01865214 PhoU_div Protein of unknown function DUF47. This family 94.37
COG1392217 Phosphate transport regulator (distant homolog of PhoU) 92.97
TIGR01013497 2a58 sodium-dependent inorganic phosphate (Pi) transpor 93.1
>PRK11115 transcriptional regulator PhoU; Provisional Back     alignment and domain information
>TIGR02135 phoU_full phosphate transport system regulatory protein PhoU; InterPro: IPR008170 This family describes PhoU, a regulatory protein of unknown mechanism for high-affinity phosphate ABC transporter systems Back     alignment and domain information
>COG0704 PhoU Phosphate uptake regulator [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>pfam01865 PhoU_div Protein of unknown function DUF47 Back     alignment and domain information
>COG1392 Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00153 TIGR00153 conserved hypothetical protein TIGR00153; InterPro: IPR002727 This family includes prokaryotic proteins of unknown function, as well as a protein annotated as the pit accessory protein from Sinorhizobium meliloti (O30498 from SWISSPROT) Back     alignment and domain information
>TIGR02135 phoU_full phosphate transport system regulatory protein PhoU; InterPro: IPR008170 This family describes PhoU, a regulatory protein of unknown mechanism for high-affinity phosphate ABC transporter systems Back     alignment and domain information
>PRK11115 transcriptional regulator PhoU; Provisional Back     alignment and domain information
>COG0704 PhoU Phosphate uptake regulator [Inorganic ion transport and metabolism] Back     alignment and domain information
>pfam01895 PhoU PhoU domain Back     alignment and domain information
>COG3273 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>pfam01895 PhoU PhoU domain Back     alignment and domain information
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG3273 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>pfam01865 PhoU_div Protein of unknown function DUF47 Back     alignment and domain information
>COG1392 Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR01013 2a58 sodium-dependent inorganic phosphate (Pi) transporter; InterPro: IPR003841 This family includes the mammalian type II renal Na+/Pi-cotransporters and other proteins from lower eukaryotes and bacteria some of which are also Na+/Pi-cotransporters Back     alignment and domain information

Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch

Homologous Structures Detected by PSI-BLAST against Nonredundant Database

Original result of PSI-BLAST

IdentityAlignment graphLength Definition E-value
Target229 putative phosphate transport system protein [Candidatus
1t8b_A227 Crystal Structure Of Refolded Phou-Like Protein (Gi 2e-40
1t72_A227 Crystal Structure Of Phosphate Transport System Pro 3e-39
1xwm_A217 The Crystal Structure Of Phou (Phosphate Uptake Reg 1e-33
2i0m_A216 Crystal Structure Of The Phosphate Transport System 2e-31
1sum_B235 Crystal Structure Of A Hypothetical Protein At 2.0 8e-27
1xwm_A217 The Crystal Structure Of Phou (Phosphate Uptake Reg 5e-04
1vct_A205 Crystal Structure Of Putative Potassium Channel Rel 7e-04
>gi|58176769|pdb|1T8B|A Chain A, Crystal Structure Of Refolded Phou-Like Protein (Gi 2983430) From Aquifex Aeolicus Length = 227 Back     alignment and structure 
 Score =  170 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 71/216 (32%), Positives = 123/216 (56%), Gaps = 1/216 (0%)

Query: 11  EELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDKAIIT 70
           +EL+    ++++M  + ++ +D +  A  + +  LA +VI  D  +D LE DI  + I  
Sbjct: 11  KELEETKEQVIKMAKLVQEAIDKATEALNKQNVELAEEVIKGDDTIDLLEVDIERRCIRM 70

Query: 71  IAKRQPMASDLREIVGSIKIAADLERIGDLAKNTAKRVLALQMFGVPRKLVWTIEPLAEL 130
           IA  QP A DLR I+G  KI +DLER+GD A+N A+R + L      +  V  I  ++E+
Sbjct: 71  IALYQPEAGDLRMIMGIYKIVSDLERMGDEAENIAERAILLAEEPPLKPYV-NINFMSEI 129

Query: 131 SLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMEDPRNITLCTHLLF 190
             E +++ +  +  + T   + +  +D  +D ++  L REL+TY++EDPRNI    HL F
Sbjct: 130 VKEMVNDSVISFIQQDTLLAKKVIEKDDTVDELYHQLERELMTYVLEDPRNIKRAMHLSF 189

Query: 191 CSKNIERIGDHVTNIAETIHYMTTGVQPYKERVRKE 226
            +++ ERI DH  N+AE   Y++ G     + ++++
Sbjct: 190 VARHYERIADHAENVAEAAIYLSEGEIVKHQHIKEK 225
>gi|58176751|pdb|1T72|A Chain A, Crystal Structure Of Phosphate Transport System Protein Phou From Aquifex Aeolicus Length = 227 Back     alignment and structure
>gi|60594474|pdb|1XWM|A Chain A, The Crystal Structure Of Phou (Phosphate Uptake Regulator), Structural Genomics Length = 217 Back     alignment and structure
gi|116667927|pdb|2I0M|A Chain A, Crystal Structure Of The Phosphate Transport System Regulatory Protein Phou From Streptococcus Pneumoniae Length = 216 Back     alignment and structure
gi|52695574|pdb|1SUM|B Chain B, Crystal Structure Of A Hypothetical Protein At 2.0 A Resolution Length = 235 Back     alignment and structure
>gi|60594474|pdb|1XWM|A Chain A, The Crystal Structure Of Phou (Phosphate Uptake Regulator), Structural Genomics Length = 217 Back     alignment and structure
gi|62738121|pdb|1VCT|A Chain A, Crystal Structure Of Putative Potassium Channel Related Protein From Pyrococcus Horikoshii Length = 205 Back     alignment and structure

Homologous Structures in PDB70 Database Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

IdentityAlignment graphLength Definition E-value
Target229 putative phosphate transport system protein [Candidatus
2i0m_A216 Phosphate transport system protein PHOU; zinc-binding p 2e-40
1sum_B235 Phosphate transport system protein PHOU homolog 2; ABC 4e-39
1t72_A227 Phosphate transport system protein PHOU homolog; helix 4e-38
1xwm_A217 PHOU, phosphate uptake regulator; negative phosphate up 7e-36
1xwm_A217 PHOU, phosphate uptake regulator; negative phosphate up 1e-05
1vct_A205 Hypothetical protein PH0236; helix rich, structural gen 5e-13
2pff_A 1688 Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carr 8e-05
>2i0m_A Phosphate transport system protein PHOU; zinc-binding protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pneumoniae TIGR4} Length = 216 Back     alignment and structure
 Score =  161 bits (407), Expect = 2e-40
 Identities = 55/209 (26%), Positives = 103/209 (49%), Gaps = 1/209 (0%)

Query: 7   SAYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDK 66
           + +D EL  L +  + +G +  +    ++ A    D  +A  +I+ D  ++Q +  I   
Sbjct: 3   NQFDLELHELEQSFLGLGQLVLETASKALLALASKDKEMAELIINKDHAINQGQSAIELT 62

Query: 67  AIITIAKRQPMASDLREIVGSIKIAADLERIGDLAKNTAKRVLALQMFGVPRKLVWTIEP 126
               +A +QP  SDLR ++  +   +DLER+GD     AK VL L+   +       +  
Sbjct: 63  CARLLALQQPQVSDLRFVISIMSSCSDLERMGDHMAGIAKAVLQLKENQLAPDEE-QLHQ 121

Query: 127 LAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMEDPRNITLCT 186
           + +LSL  L+++L  +      K  SI  +D ++D  + +L +E++  M +   +I   T
Sbjct: 122 MGKLSLSMLADLLVAFPLHQASKAISIAQKDEQIDQYYYALSKEIIGLMKDQETSIPNGT 181

Query: 187 HLLFCSKNIERIGDHVTNIAETIHYMTTG 215
             L+   ++ER  D++ NI E + Y+ TG
Sbjct: 182 QYLYIIGHLERFADYIANICERLVYLETG 210
>1sum_B Phosphate transport system protein PHOU homolog 2; ABC transport, PST, structural genomics, berkeley structural genomics center, BSGC; 2.00A {Thermotoga maritima} SCOP: a.7.12.1 Length = 235 Back     alignment and structure
>1t72_A Phosphate transport system protein PHOU homolog; helix bundle, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.90A {Aquifex aeolicus} SCOP: a.7.12.1 PDB: 1t8b_A Length = 227 Back     alignment and structure
>1xwm_A PHOU, phosphate uptake regulator; negative phosphate uptake regulator, structural genomics, protein structure initiative, PSI; 2.50A {Geobacillus stearothermophilus} SCOP: a.7.12.1 Length = 217 Back     alignment and structure
>1xwm_A PHOU, phosphate uptake regulator; negative phosphate uptake regulator, structural genomics, protein structure initiative, PSI; 2.50A {Geobacillus stearothermophilus} SCOP: a.7.12.1 Length = 217 Back     alignment and structure
>1vct_A Hypothetical protein PH0236; helix rich, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.85A {Pyrococcus horikoshii} SCOP: a.7.12.1 d.286.1.1 PDB: 2bkn_A 2bko_A 2bkp_A Length = 205 Back     alignment and structure
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 Back     alignment and structure

Homologous Structures in PDB70 Database Detected by HHsearch

Original result of HHsearch against PDB70 database

IdentityAlignment graphLength Definition Probability
Target229 putative phosphate transport system protein [Candidatus
1sum_B235 Phosphate transport system protein PHOU homolog 2; ABC 100.0
1xwm_A217 PHOU, phosphate uptake regulator; negative phosphate up 100.0
1t72_A227 Phosphate transport system protein PHOU homolog; helix 100.0
2i0m_A216 Phosphate transport system protein PHOU; zinc-binding p 100.0
2olt_A227 Hypothetical protein; NP_719307.1, DUF47, structural ge 99.21
3l39_A227 Putative PHOU-like phosphate regulatory protein; BT4638 98.94
1vct_A205 Hypothetical protein PH0236; helix rich, structural gen 99.15
1xwm_A217 PHOU, phosphate uptake regulator; negative phosphate up 99.06
1t72_A227 Phosphate transport system protein PHOU homolog; helix 99.03
1sum_B 235 Phosphate transport system protein PHOU homolog 2; ABC 99.01
2i0m_A216 Phosphate transport system protein PHOU; zinc-binding p 98.95
1vct_A205 Hypothetical protein PH0236; helix rich, structural gen 98.68
2olt_A227 Hypothetical protein; NP_719307.1, DUF47, structural ge 96.35
3l39_A227 Putative PHOU-like phosphate regulatory protein; BT4638 92.69
>1sum_B Phosphate transport system protein PHOU homolog 2; ABC transport, PST, structural genomics, berkeley structural genomics center, BSGC; 2.00A {Thermotoga maritima} SCOP: a.7.12.1 Back     alignment and structure
Probab=100.00  E-value=8.9e-43  Score=323.20  Aligned_cols=217  Identities=29%  Similarity=0.407  Sum_probs=206.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             89999999999999999999999999999999996499999999984799999999999999999971397624655542
Q gi|254780703|r    6 LSAYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDKAIITIAKRQPMASDLREIV   85 (229)
Q Consensus         6 ~~~f~~~L~~l~~~i~~m~~~v~~~l~~~~~al~~~D~~~a~~v~~~d~~id~~~~~I~~~~~~lLa~~qPva~DLR~i~   85 (229)
                      .+.|+++|+++++++.+||.+|.+|+..++++|.++|+++|++|++.|+.||.++.+|+++|+.+++++||+|.|||.+.
T Consensus         2 ~~~~~~~l~~l~~~i~~M~~~v~~~l~~a~~al~~~D~~~a~~V~~~d~~Id~l~~~I~~~~~~~la~~~p~a~dlr~i~   81 (235)
T 1sum_B            2 NRLLNEKVEEFKKGVLKAGWFIEKMFRNSISSLVERNESLAREVIADEEVVDQMEVEIQEKAMEVLGLFSPIGKPLLTVT   81 (235)
T ss_dssp             CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf             67899999999999999999999999999999986999999999982899999999999999988742598467888999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             59999999999999999999999983102653101334467799999999876443221125899999999999999999
Q gi|254780703|r   86 GSIKIAADLERIGDLAKNTAKRVLALQMFGVPRKLVWTIEPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHT  165 (229)
Q Consensus        86 ~~~~i~~dlERIgD~a~~Ia~~~~~~~~~~~~~~~~~~l~~m~~~v~~m~~~a~~af~~~d~~~a~~i~~~e~~id~l~~  165 (229)
                      +++++++++|||||||.+||+.+..... ..+.+....+.+|++.+.+|++.+++||.+.|.+.|.++++.+++||++|+
T Consensus        82 ~~l~i~~dlERIGD~a~nIa~~~~~~~~-~~~~~~~~~i~~m~~~v~~m~~~a~~a~~~~D~~~a~~v~~~~~~id~~~~  160 (235)
T 1sum_B           82 AGIRVAELIENIADKCHDIAKNVLELME-EPPLKPLEDIPAMANQTSEMLKFALRMFADVNVEKSFEVCRMDSKVDDLYE  160 (235)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTT-SCCCSCCSHHHHHHHHHHHHHHHHHHHHHSCCHHHHTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999999999887300-346562899999999999999999999984569999999998578899999


Q ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCC
Q ss_conf             9999999853217898899999999998687999999999866665310212231135
Q gi|254780703|r  166 SLFRELLTYMMEDPRNITLCTHLLFCSKNIERIGDHVTNIAETIHYMTTGVQPYKERV  223 (229)
Q Consensus       166 ~l~~~~~~~l~~~~~~~~~~~~~~~i~r~lERigDh~~nIae~iif~~tG~~~~~~~~  223 (229)
                      ++++.++.++.++|+++..++.+++++++||||||||+||||+|+|++||+++++...
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lERigDh~~NIaE~viy~~tG~~~~~~~~  218 (235)
T 1sum_B          161 KVREELLLYMMESPKYVKRALLLLEIAGNIEIIADYATNIVEVSVYMVQGEAYKCYHD  218 (235)
T ss_dssp             HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEETT
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCC
T ss_conf             9999999998869674999999999999999999999999999999992800001770
>1xwm_A PHOU, phosphate uptake regulator; negative phosphate uptake regulator, structural genomics, protein structure initiative, PSI; 2.50A {Geobacillus stearothermophilus} SCOP: a.7.12.1 Back     alignment and structure
>1t72_A Phosphate transport system protein PHOU homolog; helix bundle, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.90A {Aquifex aeolicus} SCOP: a.7.12.1 PDB: 1t8b_A Back     alignment and structure
>2i0m_A Phosphate transport system protein PHOU; zinc-binding protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pneumoniae TIGR4} Back     alignment and structure
>2olt_A Hypothetical protein; NP_719307.1, DUF47, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.00A {Shewanella oneidensis mr-1} PDB: 2iiu_A* Back     alignment and structure
>3l39_A Putative PHOU-like phosphate regulatory protein; BT4638, structural genomics, joint center for structural genomics, JCSG; 1.93A {Bacteroides thetaiotaomicron} Back     alignment and structure
>1vct_A Hypothetical protein PH0236; helix rich, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.85A {Pyrococcus horikoshii} SCOP: a.7.12.1 d.286.1.1 PDB: 2bkn_A 2bko_A 2bkp_A Back     alignment and structure
>1xwm_A PHOU, phosphate uptake regulator; negative phosphate uptake regulator, structural genomics, protein structure initiative, PSI; 2.50A {Geobacillus stearothermophilus} SCOP: a.7.12.1 Back     alignment and structure
>1t72_A Phosphate transport system protein PHOU homolog; helix bundle, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.90A {Aquifex aeolicus} SCOP: a.7.12.1 PDB: 1t8b_A Back     alignment and structure
>1sum_B Phosphate transport system protein PHOU homolog 2; ABC transport, PST, structural genomics, berkeley structural genomics center, BSGC; 2.00A {Thermotoga maritima} SCOP: a.7.12.1 Back     alignment and structure
>2i0m_A Phosphate transport system protein PHOU; zinc-binding protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pneumoniae TIGR4} Back     alignment and structure
>1vct_A Hypothetical protein PH0236; helix rich, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.85A {Pyrococcus horikoshii} SCOP: a.7.12.1 d.286.1.1 PDB: 2bkn_A 2bko_A 2bkp_A Back     alignment and structure
>2olt_A Hypothetical protein; NP_719307.1, DUF47, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.00A {Shewanella oneidensis mr-1} PDB: 2iiu_A* Back     alignment and structure
>3l39_A Putative PHOU-like phosphate regulatory protein; BT4638, structural genomics, joint center for structural genomics, JCSG; 1.93A {Bacteroides thetaiotaomicron} Back     alignment and structure

Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch

Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

IdentityAlignment graphLength Definition E-value
Target 229 putative phosphate transport system protein [Candidatus
d1t72a_215 a.7.12.1 (A:) Phosphate transport system protein PhoU { 1e-39
d1sumb_225 a.7.12.1 (B:) PhoU homolog TM1734 {Thermotoga maritima 2e-38
d1xwma_212 a.7.12.1 (A:) Phosphate transport system protein PhoU { 2e-38
d1t72a_215 a.7.12.1 (A:) Phosphate transport system protein PhoU { 2e-07
d1xwma_212 a.7.12.1 (A:) Phosphate transport system protein PhoU { 1e-05
d1vcta199 a.7.12.1 (A:9-107) Hypothetical protein PH0236, N-termi 3e-13
d1vcta199 a.7.12.1 (A:9-107) Hypothetical protein PH0236, N-termi 1e-10
>d1t72a_ a.7.12.1 (A:) Phosphate transport system protein PhoU {Aquifex aeolicus [TaxId: 63363]} Length = 215 Back     information, alignment and structure

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: PhoU-like
family: PhoU-like
domain: Phosphate transport system protein PhoU
species: Aquifex aeolicus [TaxId: 63363]

 Score =  156 bits (396), Expect = 1e-39
 Identities = 72/207 (34%), Positives = 118/207 (57%), Gaps = 1/207 (0%)

Query: 9   YDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDKAI 68
             +EL+    ++++M  + ++ +D +  A  + +  LA +VI  D  +D LE DI  + I
Sbjct: 9   LFKELEETKEQVIKMAKLVQEAIDKATEALNKQNVELAEEVIKGDDTIDLLEVDIERRCI 68

Query: 69  ITIAKRQPMASDLREIVGSIKIAADLERIGDLAKNTAKRVLALQMFGVPRKLVWTIEPLA 128
             IA  QP A DLR I+G  KI +DLER+GD A+N A+R + L     P K    I  ++
Sbjct: 69  RMIALYQPEAGDLRMIMGIYKIVSDLERMGDEAENIAERAI-LLAEEPPLKPYVNINFMS 127

Query: 129 ELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMEDPRNITLCTHL 188
           E+  E +++ +  +  + T   + +  +D  +D ++  L REL+TY++EDPRNI    HL
Sbjct: 128 EIVKEMVNDSVISFIQQDTLLAKKVIEKDDTVDELYHQLERELMTYVLEDPRNIKRAMHL 187

Query: 189 LFCSKNIERIGDHVTNIAETIHYMTTG 215
            F +++ ERI DH  N+AE   Y++ G
Sbjct: 188 SFVARHYERIADHAENVAEAAIYLSEG 214
>d1sumb_ a.7.12.1 (B:) PhoU homolog TM1734 {Thermotoga maritima [TaxId: 2336]} Length = 225 Back     information, alignment and structure
>d1xwma_ a.7.12.1 (A:) Phosphate transport system protein PhoU {Bacillus stearothermophilus [TaxId: 1422]} Length = 212 Back     information, alignment and structure
>d1t72a_ a.7.12.1 (A:) Phosphate transport system protein PhoU {Aquifex aeolicus [TaxId: 63363]} Length = 215 Back     information, alignment and structure
>d1xwma_ a.7.12.1 (A:) Phosphate transport system protein PhoU {Bacillus stearothermophilus [TaxId: 1422]} Length = 212 Back     information, alignment and structure
>d1vcta1 a.7.12.1 (A:9-107) Hypothetical protein PH0236, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 99 Back     information, alignment and structure
>d1vcta1 a.7.12.1 (A:9-107) Hypothetical protein PH0236, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 99 Back     information, alignment and structure

Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

IdentityAlignment graphLength Definition Probability
Target229 putative phosphate transport system protein [Candidatus
d1sumb_225 PhoU homolog TM1734 {Thermotoga maritima [TaxId: 2336]} 100.0
d1xwma_212 Phosphate transport system protein PhoU {Bacillus stear 100.0
d1t72a_215 Phosphate transport system protein PhoU {Aquifex aeolic 100.0
d1vcta199 Hypothetical protein PH0236, N-terminal domain {Pyrococ 99.55
d1sumb_225 PhoU homolog TM1734 {Thermotoga maritima [TaxId: 2336]} 99.1
d1vcta199 Hypothetical protein PH0236, N-terminal domain {Pyrococ 99.5
d1xwma_212 Phosphate transport system protein PhoU {Bacillus stear 99.06
d1t72a_215 Phosphate transport system protein PhoU {Aquifex aeolic 99.05
>d1sumb_ a.7.12.1 (B:) PhoU homolog TM1734 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
class: All alpha proteins
fold: Spectrin repeat-like
superfamily: PhoU-like
family: PhoU-like
domain: PhoU homolog TM1734
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=3.2e-43  Score=324.67  Aligned_cols=214  Identities=29%  Similarity=0.421  Sum_probs=204.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             99999999999999999999999999999999964999999999847999999999999999999713976246555425
Q gi|254780703|r    7 SAYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDKAIITIAKRQPMASDLREIVG   86 (229)
Q Consensus         7 ~~f~~~L~~l~~~i~~m~~~v~~~l~~~~~al~~~D~~~a~~v~~~d~~id~~~~~I~~~~~~lLa~~qPva~DLR~i~~   86 (229)
                      +-|+++|+++++++.+||..|.+|+..++.+|.++|+++|++|++.|+.||.++.+|+++|+.++|++||+|+|||.+.+
T Consensus         2 r~~~~~l~~l~~~i~~M~~~v~~~l~~a~~al~~~D~~~a~~V~~~d~~Id~l~~~I~~~~~~~la~~~p~a~dlR~i~~   81 (225)
T d1sumb_           2 RLLNEKVEEFKKGVLKAGWFIEKMFRNSISSLVERNESLAREVIADEEVVDQMEVEIQEKAMEVLGLFSPIGKPLLTVTA   81 (225)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf             62799999999999999999999999999999869999999999717779999999999999877116973257898778


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999999999831026531013344677999999998764432211258999999999999999999
Q gi|254780703|r   87 SIKIAADLERIGDLAKNTAKRVLALQMFGVPRKLVWTIEPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTS  166 (229)
Q Consensus        87 ~~~i~~dlERIgD~a~~Ia~~~~~~~~~~~~~~~~~~l~~m~~~v~~m~~~a~~af~~~d~~~a~~i~~~e~~id~l~~~  166 (229)
                      ++++++++|||||||.+||+.+..... ..+.+....+.+|++.+.+|+..+++||.++|.++|.++++.+++||++|++
T Consensus        82 ~l~i~~dlERIgD~a~~Ia~~~~~~~~-~~~~~~~~~i~~m~~~~~~m~~~a~~a~~~~d~~~a~~v~~~d~~id~l~~~  160 (225)
T d1sumb_          82 GIRVAELIENIADKCHDIAKNVLELME-EPPLKPLEDIPAMANQTSEMLKFALRMFADVNVEKSFEVCRMDSKVDDLYEK  160 (225)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTT-SCCCSCCSHHHHHHHHHHHHHHHHHHHHHSCCHHHHTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999988999988620-3565506799999999999999999999875699999999978889999999


Q ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCC
Q ss_conf             9999998532178988999999999986879999999998666653102122311
Q gi|254780703|r  167 LFRELLTYMMEDPRNITLCTHLLFCSKNIERIGDHVTNIAETIHYMTTGVQPYKE  221 (229)
Q Consensus       167 l~~~~~~~l~~~~~~~~~~~~~~~i~r~lERigDh~~nIae~iif~~tG~~~~~~  221 (229)
                      +++.++.++.++++++..++.+++++++||||||||+||||+|+|++||+.+++.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~lERIgDh~~nIaE~v~y~~~G~~~~~~  215 (225)
T d1sumb_         161 VREELLLYMMESPKYVKRALLLLEIAGNIEIIADYATNIVEVSVYMVQGEAYKCY  215 (225)
T ss_dssp             HHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEE
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC
T ss_conf             9999999988598739999999999999999999999999999999818310115
>d1xwma_ a.7.12.1 (A:) Phosphate transport system protein PhoU {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1t72a_ a.7.12.1 (A:) Phosphate transport system protein PhoU {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1vcta1 a.7.12.1 (A:9-107) Hypothetical protein PH0236, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1sumb_ a.7.12.1 (B:) PhoU homolog TM1734 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vcta1 a.7.12.1 (A:9-107) Hypothetical protein PH0236, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1xwma_ a.7.12.1 (A:) Phosphate transport system protein PhoU {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1t72a_ a.7.12.1 (A:) Phosphate transport system protein PhoU {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure

Homologous Domains in MMDB70 Database Detected by RPS-BLAST

Original result of RPS-BLAST against MMDB70 database

IdentityAlignment graphLength Definition E-value
Target 229 putative phosphate transport system protein [Candi
1t72_A_227 (A:) Phosphate transport system protein PHOU homol 7e-36
1xwm_A_217 (A:) PHOU, phosphate uptake regulator; negative ph 4e-34
2i0m_A_216 (A:) Phosphate transport system protein PHOU; zinc 1e-33
1sum_B_235 (B:) Phosphate transport system protein PHOU homol 5e-33
3l39_A_227 (A:) Putative PHOU-like phosphate regulatory prote 1e-30
2olt_A_227 (A:) Hypothetical protein; NP_719307.1, DUF47, str 5e-29
1t72_A_227 (A:) Phosphate transport system protein PHOU homol 0.001
3l39_A_227 (A:) Putative PHOU-like phosphate regulatory prote 3e-05
1vct_A_1-107107 (A:1-107) Hypothetical protein PH0236; helix rich, 8e-13
1vct_A_1-107107 (A:1-107) Hypothetical protein PH0236; helix rich, 2e-17
>1t72_A (A:) Phosphate transport system protein PHOU homolog; helix bundle, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.90A {Aquifex aeolicus}Length = 227 Back     alignment and structure
 Score =  144 bits (365), Expect = 7e-36
 Identities = 70/224 (31%), Positives = 118/224 (52%), Gaps = 1/224 (0%)

Query: 4   HILSAYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDI 63
                  +EL+    ++++   + ++ +D +  A  + +  LA +VI  D  +D LE DI
Sbjct: 4   GGGXKLFKELEETKEQVIKXAKLVQEAIDKATEALNKQNVELAEEVIKGDDTIDLLEVDI 63

Query: 64  GDKAIITIAKRQPMASDLREIVGSIKIAADLERIGDLAKNTAKRVLALQMFGVPRKLVWT 123
             + I  IA  QP A DLR I G  KI +DLER GD A+N A+R + L      +  V  
Sbjct: 64  ERRCIRXIALYQPEAGDLRXIXGIYKIVSDLERXGDEAENIAERAILLAEEPPLKPYVN- 122

Query: 124 IEPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELDAMHTSLFRELLTYMMEDPRNIT 183
           I   +E+  E +++ +  +  + T   + +  +D  +D ++  L REL TY++EDPRNI 
Sbjct: 123 INFXSEIVKEXVNDSVISFIQQDTLLAKKVIEKDDTVDELYHQLERELXTYVLEDPRNIK 182

Query: 184 LCTHLLFCSKNIERIGDHVTNIAETIHYMTTGVQPYKERVRKED 227
              HL F +++ ERI DH  N+AE   Y++ G     + ++++ 
Sbjct: 183 RAXHLSFVARHYERIADHAENVAEAAIYLSEGEIVKHQHIKEKG 226
>1xwm_A (A:) PHOU, phosphate uptake regulator; negative phosphate uptake regulator, structural genomics, protein structure initiative, PSI; 2.50A {Geobacillus stearothermophilus}Length = 217 Back     alignment and structure
>2i0m_A (A:) Phosphate transport system protein PHOU; zinc-binding protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pneumoniae TIGR4}Length = 216 Back     alignment and structure
>1sum_B (B:) Phosphate transport system protein PHOU homolog 2; ABC transport, PST, structural genomics, berkeley structural genomics center, BSGC; 2.00A {Thermotoga maritima}Length = 235 Back     alignment and structure
>3l39_A (A:) Putative PHOU-like phosphate regulatory protein; BT4638, structural genomics, joint center for structural genomics, JCSG; 1.93A {Bacteroides thetaiotaomicron}Length = 227 Back     alignment and structure
>2olt_A (A:) Hypothetical protein; NP_719307.1, DUF47, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.00A {Shewanella oneidensis mr-1} PDB: 2iiu_A*Length = 227 Back     alignment and structure
>1t72_A (A:) Phosphate transport system protein PHOU homolog; helix bundle, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.90A {Aquifex aeolicus}Length = 227 Back     alignment and structure
>3l39_A (A:) Putative PHOU-like phosphate regulatory protein; BT4638, structural genomics, joint center for structural genomics, JCSG; 1.93A {Bacteroides thetaiotaomicron}Length = 227 Back     alignment and structure
>1vct_A (A:1-107) Hypothetical protein PH0236; helix rich, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.85A {Pyrococcus horikoshii}Length = 107 Back     alignment and structure
>1vct_A (A:1-107) Hypothetical protein PH0236; helix rich, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.85A {Pyrococcus horikoshii}Length = 107 Back     alignment and structure

Homologous Domains in MMDB70 Database Detected by HHsearch

Original result of HHsearch against MMDB70 database

IdentityAlignment graphLength Definition Probability
Target229 putative phosphate transport system protein [Candidatus
1t72_A_227 Phosphate transport system protein PHOU homolog; h 100.0
1sum_B_235 Phosphate transport system protein PHOU homolog 2; 100.0
1xwm_A_217 PHOU, phosphate uptake regulator; negative phospha 100.0
2i0m_A_216 Phosphate transport system protein PHOU; zinc-bind 100.0
2olt_A_227 Hypothetical protein; NP_719307.1, DUF47, structur 99.96
3l39_A_227 Putative PHOU-like phosphate regulatory protein; B 99.95
1vct_A_1-107107 Hypothetical protein PH0236; helix rich, structura 99.62
1vct_A_1-107107 Hypothetical protein PH0236; helix rich, structura 99.49
1xwm_A_217 PHOU, phosphate uptake regulator; negative phospha 98.97
2i0m_A_216 Phosphate transport system protein PHOU; zinc-bind 98.91
1t72_A_227 Phosphate transport system protein PHOU homolog; h 98.85
2olt_A_227 Hypothetical protein; NP_719307.1, DUF47, structur 98.59
3l39_A_227 Putative PHOU-like phosphate regulatory protein; B 98.51
1sum_B_235 Phosphate transport system protein PHOU homolog 2; 99.15
>1t72_A (A:) Phosphate transport system protein PHOU homolog; helix bundle, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.90A {Aquifex aeolicus} Back     alignment and structure
Probab=100.00  E-value=3.1e-37  Score=284.74  Aligned_cols=226  Identities=31%  Similarity=0.437  Sum_probs=217.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf             11378999999999999999999999999999999999649999999998479999999999999999997139762465
Q gi|254780703|r    2 SCHILSAYDEELDFLSRRIVEMGIVSRKMVDSSVRAFIEGDTVLAHKVIDNDVVLDQLERDIGDKAIITIAKRQPMASDL   81 (229)
Q Consensus         2 ~~h~~~~f~~~L~~l~~~i~~m~~~v~~~l~~~~~al~~~D~~~a~~v~~~d~~id~~~~~I~~~~~~lLa~~qPva~DL   81 (229)
                      +.||.+.|+++|.+++.++.+|+..+..|+..+..++.++|++.++.+.++|+.+|+++.+|.++|+++|+.++|++.|+
T Consensus         2 ~~~m~~~~~~~l~~l~~~l~~m~~~~~~ml~~~~~~l~~~d~~~~~~i~~~d~~id~~~~~i~~~~~~~ls~~~~~~~~~   81 (227)
T 1t72_A            2 GGGGGXKLFKELEETKEQVIKXAKLVQEAIDKATEALNKQNVELAEEVIKGDDTIDLLEVDIERRCIRXIALYQPEAGDL   81 (227)
T ss_dssp             CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf             84300049999999999999999999999999999998799999999997588888899999999998655048656788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             55425999999999999999999999998310265310133446779999999987644322112589999999999999
Q gi|254780703|r   82 REIVGSIKIAADLERIGDLAKNTAKRVLALQMFGVPRKLVWTIEPLAELSLEQLSEILDVYGSRSTEKTQSICNRDGELD  161 (229)
Q Consensus        82 R~i~~~~~i~~dlERIgD~a~~Ia~~~~~~~~~~~~~~~~~~l~~m~~~v~~m~~~a~~af~~~d~~~a~~i~~~e~~id  161 (229)
                      |.+.+++++++++|||||||.+||+.+.... .+++.+....+.+|++.+.+++..++++|.++|.+.|.++.+.+++|+
T Consensus        82 ~~i~~~~~i~~~lErIgD~~~~ia~~~~~~~-~~~~~~~~~~l~~~~~~v~~~~~~~~~a~~~~d~~~a~~i~~~~~~i~  160 (227)
T 1t72_A           82 RXIXGIYKIVSDLERXGDEAENIAERAILLA-EEPPLKPYVNINFXSEIVKEXVNDSVISFIQQDTLLAKKVIEKDDTVD  160 (227)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSCCSSCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             8999999899999999999999999999842-368862021389999999999999999883147999999999857899


Q ss_pred             HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCHHC
Q ss_conf             9999999999985321789889999999999868799999999986666531021223113560314
Q gi|254780703|r  162 AMHTSLFRELLTYMMEDPRNITLCTHLLFCSKNIERIGDHVTNIAETIHYMTTGVQPYKERVRKEDC  228 (229)
Q Consensus       162 ~l~~~l~~~~~~~l~~~~~~~~~~~~~~~i~r~lERigDh~~nIae~iif~~tG~~~~~~~~~~~~~  228 (229)
                      ++++++++.++.++.++++++..++.+++++++|||||||++|||+.++|+.+|+.|.+++++..|+
T Consensus       161 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~leRi~d~~~nIae~~~~l~~g~~~~~~~~~~~~e  227 (227)
T 1t72_A          161 ELYHQLERELXTYVLEDPRNIKRAXHLSFVARHYERIADHAENVAEAAIYLSEGEIVKHQHIKEKGE  227 (227)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------
T ss_pred             HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             9999999999999984988599999999999999999999999999999999083046898554679
>1sum_B (B:) Phosphate transport system protein PHOU homolog 2; ABC transport, PST, structural genomics, berkeley structural genomics center, BSGC; 2.00A {Thermotoga maritima} Back     alignment and structure
>1xwm_A (A:) PHOU, phosphate uptake regulator; negative phosphate uptake regulator, structural genomics, protein structure initiative, PSI; 2.50A {Geobacillus stearothermophilus} Back     alignment and structure
>2i0m_A (A:) Phosphate transport system protein PHOU; zinc-binding protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pneumoniae TIGR4} Back     alignment and structure
>2olt_A (A:) Hypothetical protein; NP_719307.1, DUF47, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.00A {Shewanella oneidensis mr-1} PDB: 2iiu_A* Back     alignment and structure
>3l39_A (A:) Putative PHOU-like phosphate regulatory protein; BT4638, structural genomics, joint center for structural genomics, JCSG; 1.93A {Bacteroides thetaiotaomicron} Back     alignment and structure
>1vct_A (A:1-107) Hypothetical protein PH0236; helix rich, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.85A {Pyrococcus horikoshii} Back     alignment and structure
>1vct_A (A:1-107) Hypothetical protein PH0236; helix rich, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.85A {Pyrococcus horikoshii} Back     alignment and structure
>1xwm_A (A:) PHOU, phosphate uptake regulator; negative phosphate uptake regulator, structural genomics, protein structure initiative, PSI; 2.50A {Geobacillus stearothermophilus} Back     alignment and structure
>2i0m_A (A:) Phosphate transport system protein PHOU; zinc-binding protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pneumoniae TIGR4} Back     alignment and structure
>1t72_A (A:) Phosphate transport system protein PHOU homolog; helix bundle, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.90A {Aquifex aeolicus} Back     alignment and structure
>2olt_A (A:) Hypothetical protein; NP_719307.1, DUF47, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.00A {Shewanella oneidensis mr-1} PDB: 2iiu_A* Back     alignment and structure
>3l39_A (A:) Putative PHOU-like phosphate regulatory protein; BT4638, structural genomics, joint center for structural genomics, JCSG; 1.93A {Bacteroides thetaiotaomicron} Back     alignment and structure
>1sum_B (B:) Phosphate transport system protein PHOU homolog 2; ABC transport, PST, structural genomics, berkeley structural genomics center, BSGC; 2.00A {Thermotoga maritima} Back     alignment and structure