254780705
phosphate ABC transporter, permease protein PstA
GeneID in NCBI database: | 8209709 | Locus tag: | CLIBASIA_02960 |
Protein GI in NCBI database: | 254780705 | Protein Accession: | YP_003065118.1 |
Gene range: | +(561345, 562622) | Protein Length: | 425aa |
Gene description: | phosphate ABC transporter, permease protein PstA | ||
COG prediction: | [P] ABC-type phosphate transport system, permease component | ||
KEGG prediction: | pstA; phosphate ABC transporter, permease protein PstA; K02038 phosphate transport system permease protein | ||
SEED prediction: | Phosphate transport system permease protein PstA (TC 3.A.1.7.1) | ||
Pathway involved in KEGG: | ABC transporters [PATH:las02010] | ||
Subsystem involved in SEED: | High affinity phosphate transporter and control of PHO regulon;
Phosphate metabolism | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
Identity | Alignment graph | Length | Definition | E-value | |
Target | 425 | phosphate ABC transporter, permease protein PstA [Candi | |||
255764486 | 493 | ABC transporter, membrane spanning protein [Candid | 4e-13 | ||
254780341 | 281 | proline/glycine betaine ABC transporter, permease | 0.006 |
>gi|255764486|ref|YP_003065119.2| ABC transporter, membrane spanning protein [Candidatus Liberibacter asiaticus str. psy62] Length = 493 | Back alignment |
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Score = 67.4 bits (163), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 40/162 (24%), Positives = 82/162 (50%), Gaps = 18/162 (11%) Query: 207 VVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSA 266 ++G+ Y+ I + S P+G+ AIY+ E++ K + ++ L +P+IVYG + Sbjct: 257 LIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKL-RAVIKPITEMLVGIPTIVYGFFALS 315 Query: 267 VLINFFK-----------------MPRSTALVGGLILALMTLPSIIIATGVALRTVPSSI 309 ++ F + + + L GL++ +M +P + + + ++P S+ Sbjct: 316 LVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPRSL 375 Query: 310 RSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGET 351 R +LGLGA++ +T+ + + P A P I ++ +R +GET Sbjct: 376 RDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGET 417 |
>gi|254780341|ref|YP_003064754.1| proline/glycine betaine ABC transporter, permease protein [Candidatus Liberibacter asiaticus str. psy62] Length = 281 | Back alignment |
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Score = 33.5 bits (75), Expect = 0.006, Method: Compositional matrix adjust. Identities = 32/127 (25%), Positives = 64/127 (50%), Gaps = 16/127 (12%) Query: 223 PLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSAVLINFFKMPRSTALVG 282 PLG+ +A Y F S ++ ++++ ++P+ VY ++ + VL +P A + Sbjct: 113 PLGVLAAWYPR-------FYSIIRLFLDSMQTIPTFVY-LIPALVLFGLGMVPGIVATI- 163 Query: 283 GLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHV-LPLAMPAILTGST 341 + ++P+ + T + + + P ++ AA GA+ Q VF V LP A+P I+ T Sbjct: 164 -----VFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQ-VFRKVELPFAIPQIVASLT 217 Query: 342 VSLARAL 348 ++ +L Sbjct: 218 QTIMLSL 224 |
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 425 | phosphate ABC transporter, permease protein PstA [Candi | |||
315121870 | 427 | phosphate ABC transporter, permease protein PstA [Candi | 1 | 0.0 | |
222084781 | 444 | phosphate ABC transporter, permease protein PstA [Agrob | 1 | 1e-132 | |
306843559 | 436 | phosphate ABC transporter, permease protein PstA [Bruce | 1 | 1e-132 | |
153008105 | 438 | phosphate ABC transporter inner membrane subunit PstA [ | 1 | 1e-131 | |
190890214 | 440 | phosphate ABC transporter permease [Rhizobium etli CIAT | 1 | 1e-131 | |
327192730 | 440 | phosphate ABC transporter, permease protein [Rhizobium | 1 | 1e-131 | |
23502988 | 436 | phosphate ABC transporter permease [Brucella suis 1330] | 1 | 1e-131 | |
161620050 | 436 | phosphate ABC transporter, permease protein PstA [Bruce | 1 | 1e-131 | |
254713458 | 436 | phosphate ABC transporter, permease protein PstA [Bruce | 1 | 1e-131 | |
254700771 | 436 | phosphate ABC transporter, permease protein PstA [Bruce | 1 | 1e-131 |
>gi|315121870|ref|YP_004062359.1| phosphate ABC transporter, permease protein PstA [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 427 | Back alignment and organism information |
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Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/427 (79%), Positives = 385/427 (90%), Gaps = 2/427 (0%) Query: 1 MKSFSINKKNLKYRYISEWLFRFYCVVAVLVVFVFLILLLSSIVSKGIGALWQTHISLPI 60 MKSFS+NKK LK RYISE+LFRF CV+AVL+V FLI+ L SIVSKGIG LWQTHISLPI Sbjct: 1 MKSFSVNKKKLKSRYISEFLFRFSCVIAVLIVLAFLIIFLYSIVSKGIGTLWQTHISLPI 60 Query: 61 EFSETIVDPQKKRFMDPAILLRADYNLLVRKALARKLSISDSNHALLRQASQMLSTTARY 120 EFSETI+DP K RF DP+IL +A+YNLLV+ ALARKL ISDS H++L Q S+M+S+T RY Sbjct: 61 EFSETIIDPNKNRFKDPSILQKANYNLLVQMALARKLGISDSEHSMLAQVSEMISSTVRY 120 Query: 121 HLRKTLMTDPSLIGKTVEVSLLASANIDSALKGYL-YS-PANVHRMSDYQWKWFQKLDSD 178 LR TL+ DPSLIGKTVE+ LLASANIDSALKGY+ +S PA V ++SD Q KWF++L +D Sbjct: 121 RLRNTLLADPSLIGKTVEMPLLASANIDSALKGYIDFSLPATVRKISDDQLKWFRQLVAD 180 Query: 179 GALFLDFNYGFFINGASSRPEVAGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHK 238 G++ FNYGFF+NGASSRPE AGIGVA+VGSLYM+LIVI LSFP+GIASAIYLEEF+ K Sbjct: 181 GSISFHFNYGFFVNGASSRPESAGIGVAIVGSLYMILIVIALSFPVGIASAIYLEEFAPK 240 Query: 239 GFFSSFVQANINNLASVPSIVYGILGSAVLINFFKMPRSTALVGGLILALMTLPSIIIAT 298 FFSSF+QANINNLASVPS+VYGILGSA+L+NFF+MPRST+LVGGLILA+MTLPSIIIA Sbjct: 241 NFFSSFIQANINNLASVPSVVYGILGSAMLVNFFQMPRSTSLVGGLILAIMTLPSIIIAA 300 Query: 299 GVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVG 358 GVALRTVPSSIRSAALGLGASKVQTVFHHVLPLA+PAILTGSTVSLARALGETAPLLFVG Sbjct: 301 GVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAVPAILTGSTVSLARALGETAPLLFVG 360 Query: 359 MVAFVTDYPVGVTDIATAFPVQIYLWAADAERPFVERTFGAILLLLIFLAVINTAMLWLR 418 MVAFVTDYP G+TDIATAFPVQ+YLW +DAER FVE+TFG+ILLLL+FLAVINT MLWLR Sbjct: 361 MVAFVTDYPEGITDIATAFPVQVYLWTSDAERLFVEKTFGSILLLLVFLAVINTVMLWLR 420 Query: 419 NRFKKRW 425 NRF+K W Sbjct: 421 NRFRKHW 427 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|222084781|ref|YP_002543310.1| phosphate ABC transporter, permease protein PstA [Agrobacterium radiobacter K84] Length = 444 | Back alignment and organism information |
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>gi|306843559|ref|ZP_07476160.1| phosphate ABC transporter, permease protein PstA [Brucella sp. BO1] Length = 436 | Back alignment and organism information |
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>gi|153008105|ref|YP_001369320.1| phosphate ABC transporter inner membrane subunit PstA [Ochrobactrum anthropi ATCC 49188] Length = 438 | Back alignment and organism information |
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>gi|190890214|ref|YP_001976756.1| phosphate ABC transporter permease [Rhizobium etli CIAT 652] Length = 440 | Back alignment and organism information |
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>gi|327192730|gb|EGE59666.1| phosphate ABC transporter, permease protein [Rhizobium etli CNPAF512] Length = 440 | Back alignment and organism information |
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>gi|23502988|ref|NP_699115.1| phosphate ABC transporter permease [Brucella suis 1330] Length = 436 | Back alignment and organism information |
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>gi|161620050|ref|YP_001593937.1| phosphate ABC transporter, permease protein PstA [Brucella canis ATCC 23365] Length = 436 | Back alignment and organism information |
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>gi|254713458|ref|ZP_05175269.1| phosphate ABC transporter, permease protein PstA [Brucella ceti M644/93/1] Length = 436 | Back alignment and organism information |
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>gi|254700771|ref|ZP_05162599.1| phosphate ABC transporter, permease protein PstA [Brucella suis bv. 5 str. 513] Length = 436 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 425 | phosphate ABC transporter, permease protein PstA [Candi | ||
TIGR00974 | 271 | TIGR00974, 3a0107s02c, phosphate ABC transporter, perme | 2e-48 | |
COG0573 | 310 | COG0573, PstC, ABC-type phosphate transport system, per | 5e-27 | |
TIGR02138 | 295 | TIGR02138, phosphate_pstC, phosphate ABC transporter, p | 1e-24 | |
COG4149 | 225 | COG4149, ModC, ABC-type molybdate transport system, per | 7e-10 | |
COG1177 | 267 | COG1177, PotC, ABC-type spermidine/putrescine transport | 8e-10 | |
COG0555 | 274 | COG0555, CysU, ABC-type sulfate transport system, perme | 4e-09 | |
COG2011 | 222 | COG2011, AbcD, ABC-type metal ion transport system, per | 1e-06 | |
COG1178 | 540 | COG1178, ThiP, ABC-type Fe3+ transport system, permease | 2e-05 | |
COG0581 | 292 | COG0581, PstA, ABC-type phosphate transport system, per | 2e-58 | |
pfam11812 | 155 | pfam11812, DUF3333, Domain of unknown function (DUF3333 | 4e-35 | |
PRK11268 | 295 | PRK11268, pstA, phosphate transporter permease subunit | 8e-19 | |
cd06261 | 190 | cd06261, TM_PBP2, Transmembrane subunit (TM) found in P | 2e-14 | |
PRK11275 | 319 | PRK11275, pstC, phosphate transporter permease subunit | 6e-08 | |
COG1174 | 221 | COG1174, OpuBB, ABC-type proline/glycine betaine transp | 9e-08 | |
COG4176 | 290 | COG4176, ProW, ABC-type proline/glycine betaine transpo | 3e-06 | |
PRK10952 | 355 | PRK10952, PRK10952, glycine betaine transporter membran | 6e-05 | |
TIGR03255 | 272 | TIGR03255, PhnV, 2-aminoethylphosphonate ABC transport | 2e-04 | |
TIGR03416 | 267 | TIGR03416, ABC_choXWV_perm, choline ABC transporter, pe | 6e-04 | |
COG1178 | 540 | COG1178, ThiP, ABC-type Fe3+ transport system, permease | 0.001 | |
COG1173 | 289 | COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel t | 0.001 | |
COG4590 | 733 | COG4590, COG4590, ABC-type uncharacterized transport sy | 3e-10 | |
TIGR02141 | 208 | TIGR02141, modB_ABC, molybdate ABC transporter, permeas | 9e-08 | |
TIGR01581 | 225 | TIGR01581, Mo_ABC_porter, NifC-like ABC-type porter | 4e-06 | |
pfam00528 | 183 | pfam00528, BPD_transp_1, Binding-protein-dependent tran | 5e-09 | |
TIGR02139 | 265 | TIGR02139, permease_CysT, sulfate ABC transporter, perm | 9e-06 | |
PRK09421 | 229 | PRK09421, modB, molybdate ABC transporter permease prot | 3e-05 | |
COG0600 | 258 | COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate t | 1e-04 | |
CHL00187 | 237 | CHL00187, cysT, sulfate transport protein; Provisional | 3e-04 | |
COG1176 | 287 | COG1176, PotB, ABC-type spermidine/putrescine transport | 3e-04 | |
TIGR03226 | 312 | TIGR03226, PhnU, 2-aminoethylphosphonate ABC transporte | 0.001 | |
PRK10971 | 277 | PRK10971, PRK10971, sulfate/thiosulfate transporter sub | 0.001 | |
PRK15050 | 296 | PRK15050, PRK15050, 2-aminoethylphosphonate transport s | 0.001 | |
PRK09497 | 285 | PRK09497, potB, spermidine/putrescine ABC transporter m | 0.002 |
>gnl|CDD|162141 TIGR00974, 3a0107s02c, phosphate ABC transporter, permease protein PstA | Back alignment and domain information |
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>gnl|CDD|30918 COG0573, PstC, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism] | Back alignment and domain information |
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>gnl|CDD|162724 TIGR02138, phosphate_pstC, phosphate ABC transporter, permease protein PstC | Back alignment and domain information |
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>gnl|CDD|33901 COG4149, ModC, ABC-type molybdate transport system, permease component [Inorganic ion transport and metabolism] | Back alignment and domain information |
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>gnl|CDD|31370 COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism] | Back alignment and domain information |
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>gnl|CDD|30901 COG0555, CysU, ABC-type sulfate transport system, permease component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
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>gnl|CDD|32194 COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism] | Back alignment and domain information |
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>gnl|CDD|31371 COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism] | Back alignment and domain information |
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>gnl|CDD|30926 COG0581, PstA, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism] | Back alignment and domain information |
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>gnl|CDD|152248 pfam11812, DUF3333, Domain of unknown function (DUF3333) | Back alignment and domain information |
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>gnl|CDD|183065 PRK11268, pstA, phosphate transporter permease subunit PtsA; Provisional | Back alignment and domain information |
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>gnl|CDD|119394 cd06261, TM_PBP2, Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs | Back alignment and domain information |
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>gnl|CDD|183070 PRK11275, pstC, phosphate transporter permease subunit PstC; Provisional | Back alignment and domain information |
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>gnl|CDD|31367 COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism] | Back alignment and domain information |
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>gnl|CDD|33916 COG4176, ProW, ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism] | Back alignment and domain information |
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>gnl|CDD|182861 PRK10952, PRK10952, glycine betaine transporter membrane protein; Provisional | Back alignment and domain information |
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>gnl|CDD|132299 TIGR03255, PhnV, 2-aminoethylphosphonate ABC transport system, membrane component PhnV | Back alignment and domain information |
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>gnl|CDD|132457 TIGR03416, ABC_choXWV_perm, choline ABC transporter, permease protein | Back alignment and domain information |
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>gnl|CDD|31371 COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism] | Back alignment and domain information |
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>gnl|CDD|31366 COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
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>gnl|CDD|34228 COG4590, COG4590, ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
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>gnl|CDD|162726 TIGR02141, modB_ABC, molybdate ABC transporter, permease protein | Back alignment and domain information |
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>gnl|CDD|130643 TIGR01581, Mo_ABC_porter, NifC-like ABC-type porter | Back alignment and domain information |
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>gnl|CDD|144205 pfam00528, BPD_transp_1, Binding-protein-dependent transport system inner membrane component | Back alignment and domain information |
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>gnl|CDD|131194 TIGR02139, permease_CysT, sulfate ABC transporter, permease protein CysT | Back alignment and domain information |
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>gnl|CDD|181841 PRK09421, modB, molybdate ABC transporter permease protein; Reviewed | Back alignment and domain information |
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>gnl|CDD|30945 COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism] | Back alignment and domain information |
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>gnl|CDD|164564 CHL00187, cysT, sulfate transport protein; Provisional | Back alignment and domain information |
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>gnl|CDD|31369 COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism] | Back alignment and domain information |
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>gnl|CDD|132270 TIGR03226, PhnU, 2-aminoethylphosphonate ABC transporter, permease protein | Back alignment and domain information |
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>gnl|CDD|182873 PRK10971, PRK10971, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
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>gnl|CDD|185010 PRK15050, PRK15050, 2-aminoethylphosphonate transport system permease PhnU; Provisional | Back alignment and domain information |
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>gnl|CDD|181910 PRK09497, potB, spermidine/putrescine ABC transporter membrane protein; Reviewed | Back alignment and domain information |
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Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 425 | phosphate ABC transporter, permease protein PstA [Candi | ||
COG0581 | 292 | PstA ABC-type phosphate transport system, permease comp | 100.0 | |
TIGR00974 | 302 | 3a0107s02c phosphate ABC transporter, permease protein | 100.0 | |
PRK11275 | 319 | pstC phosphate transporter permease subunit; Provisiona | 100.0 | |
PRK10971 | 277 | sulfate/thiosulfate transporter subunit; Provisional | 99.97 | |
PRK09494 | 219 | glnP glutamine ABC transporter permease protein; Review | 99.74 | |
PRK10352 | 314 | nickel transporter permease NikB; Provisional | 99.42 | |
PRK10914 | 339 | dipeptide transporter permease DppB; Provisional | 99.42 | |
COG0601 | 317 | DppB ABC-type dipeptide/oligopeptide/nickel transport s | 99.34 | |
PRK11268 | 292 | pstA phosphate transporter permease subunit; Provisiona | 100.0 | |
TIGR02138 | 317 | phosphate_pstC phosphate ABC transporter, permease prot | 100.0 | |
COG0573 | 310 | PstC ABC-type phosphate transport system, permease comp | 100.0 | |
pfam11812 | 155 | DUF3333 Domain of unknown function (DUF3333). This fami | 100.0 | |
PRK09421 | 229 | modB molybdate ABC transporter permease protein; Review | 99.97 | |
TIGR02141 | 212 | modB_ABC molybdate ABC transporter, permease protein; I | 99.97 | |
COG4590 | 733 | ABC-type uncharacterized transport system, permease com | 99.97 | |
COG4149 | 225 | ModC ABC-type molybdate transport system, permease comp | 99.97 | |
TIGR01581 | 226 | Mo_ABC_porter NifC-like ABC-type porter; InterPro: IPR0 | 99.96 | |
COG0555 | 274 | CysU ABC-type sulfate transport system, permease compon | 99.96 | |
TIGR02139 | 265 | permease_CysT sulfate ABC transporter, permease protein | 99.96 | |
PRK10592 | 281 | putrescine transporter subunit: membrane component of A | 99.96 | |
PRK11602 | 291 | cysW sulfate/thiosulfate transporter permease subunit; | 99.96 | |
TIGR03255 | 272 | PhnV 2-aminoethylphosphonate ABC transport system, memb | 99.96 | |
COG1177 | 267 | PotC ABC-type spermidine/putrescine transport system, p | 99.95 | |
TIGR00969 | 280 | 3a0106s02 sulfate ABC transporter, permease protein; In | 99.95 | |
PRK09500 | 257 | potC spermidine/putrescine ABC transporter membrane pro | 99.95 | |
PRK10782 | 217 | DL-methionine transporter permease subunit; Provisional | 99.94 | |
TIGR03226 | 312 | PhnU 2-aminoethylphosphonate ABC transporter, permease | 99.93 | |
TIGR03262 | 546 | PhnU2 putative 2-aminoethylphosphonate ABC transport sy | 99.93 | |
PRK09433 | 536 | thiP thiamine transporter membrane protein; Reviewed | 99.91 | |
PRK09497 | 285 | potB spermidine/putrescine ABC transporter membrane pro | 99.91 | |
TIGR02140 | 275 | permease_CysW sulfate ABC transporter, permease protein | 99.9 | |
TIGR03262 | 546 | PhnU2 putative 2-aminoethylphosphonate ABC transport sy | 99.9 | |
COG1178 | 540 | ThiP ABC-type Fe3+ transport system, permease component | 99.9 | |
COG1178 | 540 | ThiP ABC-type Fe3+ transport system, permease component | 99.89 | |
PRK10683 | 317 | putrescine transporter subunit: membrane component of A | 99.88 | |
PRK09433 | 536 | thiP thiamine transporter membrane protein; Reviewed | 99.85 | |
COG4662 | 227 | TupA ABC-type tungstate transport system, periplasmic c | 99.83 | |
PRK10952 | 354 | glycine betaine transporter membrane protein; Provision | 99.82 | |
COG4208 | 287 | CysW ABC-type sulfate transport system, permease compon | 99.82 | |
COG2011 | 222 | AbcD ABC-type metal ion transport system, permease comp | 99.81 | |
COG1176 | 287 | PotB ABC-type spermidine/putrescine transport system, p | 99.81 | |
PRK10998 | 296 | malG maltose transporter permease; Provisional | 99.79 | |
PRK10160 | 275 | taurine transporter subunit; Provisional | 99.77 | |
PRK11365 | 263 | ssuC alkanesulfonate transporter permease subunit; Prov | 99.77 | |
pfam00528 | 183 | BPD_transp_1 Binding-protein-dependent transport system | 99.76 | |
COG1175 | 295 | UgpA ABC-type sugar transport systems, permease compone | 99.74 | |
PRK10561 | 280 | glycerol-3-phosphate transporter permease; Provisional | 99.73 | |
COG0395 | 281 | UgpE ABC-type sugar transport system, permease componen | 99.72 | |
COG0765 | 222 | HisM ABC-type amino acid transport system, permease com | 99.72 | |
PRK11123 | 238 | arginine transporter permease subunit ArtQ; Provisional | 99.71 | |
PRK10973 | 281 | glycerol-3-phosphate transporter membrane protein; Prov | 99.7 | |
COG0600 | 258 | TauC ABC-type nitrate/sulfonate/bicarbonate transport s | 99.68 | |
COG4132 | 282 | ABC-type uncharacterized transport system, permease com | 99.65 | |
COG3639 | 283 | ABC-type phosphate/phosphonate transport system, permea | 99.62 | |
PRK10999 | 520 | malF maltose transporter membrane protein; Provisional | 99.61 | |
COG1173 | 289 | DppC ABC-type dipeptide/oligopeptide/nickel transport s | 99.53 | |
PRK09881 | 296 | ATP-dependent peptide transporter membrane subunit; Pro | 99.51 | |
PRK10417 | 272 | nikC nickel transporter permease NikC; Provisional | 99.47 | |
PRK10913 | 300 | dipeptide transporter; Provisional | 99.47 | |
COG3833 | 282 | MalG ABC-type maltose transport systems, permease compo | 99.42 | |
COG4215 | 230 | ArtQ ABC-type arginine transport system, permease compo | 99.39 | |
PRK09471 | 306 | oppB oligopeptide transporter permease; Reviewed | 99.35 | |
COG4209 | 309 | LplB ABC-type polysaccharide transport system, permease | 99.23 | |
TIGR03004 | 216 | ectoine_ehuC ectoine/hydroxyectoine ABC transporter, pe | 98.91 | |
TIGR01097 | 192 | 3A0109s02M phosphonate ABC transporter, permease protei | 98.81 | |
TIGR02790 | 258 | nickel_nikC nickel ABC transporter, permease subunit Ni | 98.75 | |
COG4986 | 523 | ABC-type anion transport system, duplicated permease co | 98.61 | |
COG4239 | 341 | ABC-type uncharacterized transport system, permease com | 98.58 | |
TIGR01253 | 519 | thiP thiamine/thiamine pyrophosphate ABC transporter, p | 98.44 | |
COG4135 | 551 | ABC-type uncharacterized transport system, permease com | 97.97 | |
CHL00187 | 235 | cysT sulfate transport protein; Provisional | 99.92 | |
cd06261 | 190 | TM_PBP2 Transmembrane subunit (TM) found in Periplasmic | 99.88 | |
COG1174 | 221 | OpuBB ABC-type proline/glycine betaine transport system | 99.76 | |
COG4135 | 551 | ABC-type uncharacterized transport system, permease com | 98.46 | |
COG4171 | 296 | SapC ABC-type antimicrobial peptide transport system, p | 98.26 | |
TIGR03416 | 267 | ABC_choXWV_perm choline ABC transporter, permease prote | 99.83 | |
COG4176 | 290 | ProW ABC-type proline/glycine betaine transport system, | 99.71 | |
PRK11122 | 222 | artM arginine transporter permease subunit ArtM; Provis | 99.62 | |
COG4160 | 228 | ArtM ABC-type arginine/histidine transport system, perm | 98.88 | |
TIGR03003 | 218 | ectoine_ehuD ectoine/hydroxyectoine ABC transporter, pe | 98.61 | |
COG4986 | 523 | ABC-type anion transport system, duplicated permease co | 98.51 | |
COG4597 | 397 | BatB ABC-type amino acid transport system, permease com | 97.9 | |
TIGR01183 | 203 | ntrB nitrate ABC transporter, permease protein; InterPr | 97.85 | |
TIGR02789 | 315 | nickel_nikB nickel ABC transporter, permease subunit Ni | 97.82 | |
COG4174 | 364 | ABC-type uncharacterized transport system, permease com | 94.86 | |
TIGR01253 | 519 | thiP thiamine/thiamine pyrophosphate ABC transporter, p | 98.81 | |
TIGR01726 | 99 | HEQRo_perm_3TM amino acid ABC transporter, permease pro | 96.73 | |
COG4168 | 321 | SapB ABC-type antimicrobial peptide transport system, p | 94.62 | |
COG0390 | 256 | ABC-type uncharacterized transport system, permease com | 94.46 | |
pfam03649 | 250 | UPF0014 Uncharacterized protein family (UPF0014). | 92.66 | |
TIGR01478 | 315 | STEVOR variant surface antigen, stevor family; InterPro | 91.23 |
>COG0581 PstA ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism] | Back alignment and domain information |
---|
>TIGR00974 3a0107s02c phosphate ABC transporter, permease protein PstA; InterPro: IPR005672 Bacterial binding protein-dependent transport systems , are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system | Back alignment and domain information |
---|
>PRK11275 pstC phosphate transporter permease subunit; Provisional | Back alignment and domain information |
---|
>PRK10971 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
---|
>PRK09494 glnP glutamine ABC transporter permease protein; Reviewed | Back alignment and domain information |
---|
>PRK10352 nickel transporter permease NikB; Provisional | Back alignment and domain information |
---|
>PRK10914 dipeptide transporter permease DppB; Provisional | Back alignment and domain information |
---|
>COG0601 DppB ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
---|
>PRK11268 pstA phosphate transporter permease subunit; Provisional | Back alignment and domain information |
---|
>TIGR02138 phosphate_pstC phosphate ABC transporter, permease protein PstC; InterPro: IPR011864 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems | Back alignment and domain information |
---|
>COG0573 PstC ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism] | Back alignment and domain information |
---|
>pfam11812 DUF3333 Domain of unknown function (DUF3333) | Back alignment and domain information |
---|
>PRK09421 modB molybdate ABC transporter permease protein; Reviewed | Back alignment and domain information |
---|
>TIGR02141 modB_ABC molybdate ABC transporter, permease protein; InterPro: IPR011867 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems | Back alignment and domain information |
---|
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
---|
>COG4149 ModC ABC-type molybdate transport system, permease component [Inorganic ion transport and metabolism] | Back alignment and domain information |
---|
>TIGR01581 Mo_ABC_porter NifC-like ABC-type porter; InterPro: IPR006469 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems | Back alignment and domain information |
---|
>COG0555 CysU ABC-type sulfate transport system, permease component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
---|
>TIGR02139 permease_CysT sulfate ABC transporter, permease protein CysT; InterPro: IPR011865 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems | Back alignment and domain information |
---|
>PRK10592 putrescine transporter subunit: membrane component of ABC superfamily; Provisional | Back alignment and domain information |
---|
>PRK11602 cysW sulfate/thiosulfate transporter permease subunit; Provisional | Back alignment and domain information |
---|
>TIGR03255 PhnV 2-aminoethylphosphonate ABC transport system, membrane component PhnV | Back alignment and domain information |
---|
>COG1177 PotC ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism] | Back alignment and domain information |
---|
>TIGR00969 3a0106s02 sulfate ABC transporter, permease protein; InterPro: IPR005667 Bacterial binding protein-dependent transport systems , are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system | Back alignment and domain information |
---|
>PRK09500 potC spermidine/putrescine ABC transporter membrane protein; Reviewed | Back alignment and domain information |
---|
>PRK10782 DL-methionine transporter permease subunit; Provisional | Back alignment and domain information |
---|
>TIGR03226 PhnU 2-aminoethylphosphonate ABC transporter, permease protein | Back alignment and domain information |
---|
>TIGR03262 PhnU2 putative 2-aminoethylphosphonate ABC transport system, permease protein | Back alignment and domain information |
---|
>PRK09433 thiP thiamine transporter membrane protein; Reviewed | Back alignment and domain information |
---|
>PRK09497 potB spermidine/putrescine ABC transporter membrane protein; Reviewed | Back alignment and domain information |
---|
>TIGR02140 permease_CysW sulfate ABC transporter, permease protein CysW; InterPro: IPR011866 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems | Back alignment and domain information |
---|
>TIGR03262 PhnU2 putative 2-aminoethylphosphonate ABC transport system, permease protein | Back alignment and domain information |
---|
>COG1178 ThiP ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism] | Back alignment and domain information |
---|
>COG1178 ThiP ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism] | Back alignment and domain information |
---|
>PRK10683 putrescine transporter subunit: membrane component of ABC superfamily; Provisional | Back alignment and domain information |
---|
>PRK09433 thiP thiamine transporter membrane protein; Reviewed | Back alignment and domain information |
---|
>COG4662 TupA ABC-type tungstate transport system, periplasmic component [Coenzyme metabolism] | Back alignment and domain information |
---|
>PRK10952 glycine betaine transporter membrane protein; Provisional | Back alignment and domain information |
---|
>COG4208 CysW ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism] | Back alignment and domain information |
---|
>COG2011 AbcD ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism] | Back alignment and domain information |
---|
>COG1176 PotB ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism] | Back alignment and domain information |
---|
>PRK10998 malG maltose transporter permease; Provisional | Back alignment and domain information |
---|
>PRK10160 taurine transporter subunit; Provisional | Back alignment and domain information |
---|
>PRK11365 ssuC alkanesulfonate transporter permease subunit; Provisional | Back alignment and domain information |
---|
>pfam00528 BPD_transp_1 Binding-protein-dependent transport system inner membrane component | Back alignment and domain information |
---|
>COG1175 UgpA ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism] | Back alignment and domain information |
---|
>PRK10561 glycerol-3-phosphate transporter permease; Provisional | Back alignment and domain information |
---|
>COG0395 UgpE ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism] | Back alignment and domain information |
---|
>COG0765 HisM ABC-type amino acid transport system, permease component [Amino acid transport and metabolism] | Back alignment and domain information |
---|
>PRK11123 arginine transporter permease subunit ArtQ; Provisional | Back alignment and domain information |
---|
>PRK10973 glycerol-3-phosphate transporter membrane protein; Provisional | Back alignment and domain information |
---|
>COG0600 TauC ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism] | Back alignment and domain information |
---|
>COG4132 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
---|
>COG3639 ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport and metabolism] | Back alignment and domain information |
---|
>PRK10999 malF maltose transporter membrane protein; Provisional | Back alignment and domain information |
---|
>COG1173 DppC ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
---|
>PRK09881 ATP-dependent peptide transporter membrane subunit; Provisional | Back alignment and domain information |
---|
>PRK10417 nikC nickel transporter permease NikC; Provisional | Back alignment and domain information |
---|
>PRK10913 dipeptide transporter; Provisional | Back alignment and domain information |
---|
>COG3833 MalG ABC-type maltose transport systems, permease component [Carbohydrate transport and metabolism] | Back alignment and domain information |
---|
>COG4215 ArtQ ABC-type arginine transport system, permease component [Amino acid transport and metabolism] | Back alignment and domain information |
---|
>PRK09471 oppB oligopeptide transporter permease; Reviewed | Back alignment and domain information |
---|
>COG4209 LplB ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism] | Back alignment and domain information |
---|
>TIGR03004 ectoine_ehuC ectoine/hydroxyectoine ABC transporter, permease protein EhuC; InterPro: IPR014342 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems | Back alignment and domain information |
---|
>TIGR01097 3A0109s02M phosphonate ABC transporter, permease protein; InterPro: IPR005769 Bacterial binding protein-dependent transport systems , are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system | Back alignment and domain information |
---|
>TIGR02790 nickel_nikC nickel ABC transporter, permease subunit NikC; InterPro: IPR014157 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems | Back alignment and domain information |
---|
>COG4986 ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism] | Back alignment and domain information |
---|
>COG4239 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
---|
>TIGR01253 thiP thiamine/thiamine pyrophosphate ABC transporter, permease protein; InterPro: IPR005947 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems | Back alignment and domain information |
---|
>COG4135 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
---|
>CHL00187 cysT sulfate transport protein; Provisional | Back alignment and domain information |
---|
>cd06261 TM_PBP2 Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs | Back alignment and domain information |
---|
>COG1174 OpuBB ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism] | Back alignment and domain information |
---|
>COG4135 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
---|
>COG4171 SapC ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms] | Back alignment and domain information |
---|
>TIGR03416 ABC_choXWV_perm choline ABC transporter, permease protein | Back alignment and domain information |
---|
>COG4176 ProW ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism] | Back alignment and domain information |
---|
>PRK11122 artM arginine transporter permease subunit ArtM; Provisional | Back alignment and domain information |
---|
>COG4160 ArtM ABC-type arginine/histidine transport system, permease component [Amino acid transport and metabolism] | Back alignment and domain information |
---|
>TIGR03003 ectoine_ehuD ectoine/hydroxyectoine ABC transporter, permease protein EhuD; InterPro: IPR014341 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems | Back alignment and domain information |
---|
>COG4986 ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism] | Back alignment and domain information |
---|
>COG4597 BatB ABC-type amino acid transport system, permease component [Amino acid transport and metabolism] | Back alignment and domain information |
---|
>TIGR01183 ntrB nitrate ABC transporter, permease protein; InterPro: IPR005889 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems | Back alignment and domain information |
---|
>TIGR02789 nickel_nikB nickel ABC transporter, permease subunit NikB; InterPro: IPR014156 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems | Back alignment and domain information |
---|
>COG4174 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
---|
>TIGR01253 thiP thiamine/thiamine pyrophosphate ABC transporter, permease protein; InterPro: IPR005947 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems | Back alignment and domain information |
---|
>TIGR01726 HEQRo_perm_3TM amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; InterPro: IPR010065 This entry represents one of several classes of multiple membrane spanning regions found in the inner membrane component of binding-protein-dependent transport systems | Back alignment and domain information |
---|
>COG4168 SapB ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms] | Back alignment and domain information |
---|
>COG0390 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
---|
>pfam03649 UPF0014 Uncharacterized protein family (UPF0014) | Back alignment and domain information |
---|
>TIGR01478 STEVOR variant surface antigen, stevor family; InterPro: IPR006374 Malaria is still a major cause of mortality in many areas of the world | Back alignment and domain information |
---|
Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
No homologous structure with e-value below 0.005
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 425 | phosphate ABC transporter, permease protein PstA [Candi | ||
3d31_C | 295 | Sulfate/molybdate ABC transporter, permease protein; AT | 2e-11 | |
3dhw_A | 217 | D-methionine transport system permease protein METI; AB | 1e-07 | |
2r6g_F | 514 | Maltose transport system permease protein MALF; ABC tra | 2e-06 |
>3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: f.58.1.1 Length = 295 | Back alignment and structure |
---|
Score = 66.2 bits (161), Expect = 2e-11 Identities = 43/229 (18%), Positives = 81/229 (35%), Gaps = 31/229 (13%) Query: 206 AVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGS 265 ++ SLY + L+ LG + L F G V++ I+ VP V GI Sbjct: 83 SIFLSLYAGFLATLLALLLGAPTGYILARFDFPG--KRLVESIIDVPVVVPHTVAGIALL 140 Query: 266 AVLINFFKMPRSTALVGG---------LILALMTLPSIIIATGVALRTVPSSIRSAALGL 316 V + + + + +++P + + ++V + +AA L Sbjct: 141 TVFGSRGLIGEPLESYIQFRDALPGIVVAMLFVSMPYLANSAREGFKSVDPRLENAARSL 200 Query: 317 GASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVGMVAFVTDYPVGVTDIATA 376 GA + F LPL+ +L GS ++ ARA+ E ++ + V Sbjct: 201 GAPLWKAFFFVTLPLSARYLLIGSVMTWARAISEFGAVVILAYYPMVG------------ 248 Query: 377 FPVQIYLWAADAERPFVERTFGAILLLLIFLAVINTAMLWLRNRFKKRW 425 P IY F+ A + + L ++ ++ + W Sbjct: 249 -PTLIYDR-------FISYGLSASRPIAVLLILVTLSIFLVIRTLSAGW 289 |
>3dhw_A D-methionine transport system permease protein METI; ABC-transporter, methionine uptake transporter, membrane protein, amino-acid transport; 3.70A {Escherichia coli K12} SCOP: f.58.1.1 Length = 217 | Back alignment and structure |
---|
>2r6g_F Maltose transport system permease protein MALF; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} SCOP: e.70.1.1 f.58.1.1 PDB: 3fh6_F Length = 514 | Back alignment and structure |
---|
Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 425 | phosphate ABC transporter, permease protein PstA [Candi | ||
2onk_C | 284 | Molybdate/tungstate ABC transporter, permease protein; | 99.93 | |
3d31_C | 295 | Sulfate/molybdate ABC transporter, permease protein; AT | 99.93 | |
3dhw_A | 217 | D-methionine transport system permease protein METI; AB | 99.91 | |
2r6g_F | 514 | Maltose transport system permease protein MALF; ABC tra | 99.91 | |
2r6g_G | 296 | Maltose transport system permease protein MALG; ABC tra | 99.86 |
>2onk_C Molybdate/tungstate ABC transporter, permease protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: f.58.1.1 | Back alignment and structure |
---|
Probab=99.93 E-value=1.1e-24 Score=174.76 Aligned_cols=207 Identities=18% Similarity=0.177 Sum_probs=167.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---- Q ss_conf 1202667899999999999999999999999998643730245678989988765336999999999999862666---- Q gi|254780705|r 200 VAGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSAVLINFFKMP---- 275 (425) Q Consensus 200 ~~Gi~~ai~gTl~~~~ia~~ia~pigv~~aiyl~e~a~~~~~~~~i~~~i~~la~vPSIv~Gl~gl~~~~~~~~~~---- 275 (425) ..+.+.++.+|+..+++++++++++|+..|+++.++ +.+.+++++..+.....+|++++++..+.++.+..... T Consensus 67 ~~~~~~~~~~Sl~~a~~s~~l~~~ig~~~a~~l~~~--~~~~~~~~~~l~~~p~~iP~~v~~~~~~~~~~~~~~~~~~~~ 144 (284) T 2onk_C 67 DPAVWKVVLTTYYAALISTLIAVIFGTPLAYILARK--SFPGKSVVEGIVDLPVVIPHTVAGIALLVVFGSSGLIGSFSP 144 (284) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC--CCSSHHHHHHHHHHHHHSCHHHHHHHHHHHHSTTSTTTTTCS T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCC T ss_conf 979999999999999999999999999999999982--644899999999978744514456666553312255676210 Q ss_pred ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf ---30046897533454366899999999851106789899870772127777883975332589999999999876779 Q gi|254780705|r 276 ---RSTALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETA 352 (425) Q Consensus 276 ---~~~~l~g~~~l~~m~lP~i~~~~~~al~~vp~~~~eaa~~LGas~~~~~~~v~lp~a~pgi~~g~il~~~ra~GEta 352 (425) ..+.....++.....+|+++...+++++++|+++.|||..+|+++||++++|++|.++|+++++.+++++++++|++ T Consensus 145 ~~~~~~~~~iil~~~~~~~p~~~~~~~~~l~~i~~~l~eaA~~lGas~~~~~~~IilP~~~p~i~~~~il~f~~~~~~~~ 224 (284) T 2onk_C 145 LKFVDALPGIVVAMLFVSVPIYINQAKEGFASVDVRLEHVARTLGSSPLRVFFTVSLPLSVRHIVAGAIMSWARGISEFG 224 (284) T ss_dssp SCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCH T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEHEEEHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 00321069999998861465022234355315885689999975989353011024999999999999999999999999 Q ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 999985432101366561344557999999860366500699999999999999999999999999974104 Q gi|254780705|r 353 PLLFVGMVAFVTDYPVGVTDIATAFPVQIYLWAADAERPFVERTFGAILLLLIFLAVINTAMLWLRNRFKKR 424 (425) Q Consensus 353 ~ll~~~~~~~~~~~p~~~~~p~~tlp~~Iy~~~~~~~~~~~~~~~aa~lvLl~~~~~~n~~a~~lr~r~~~~ 424 (425) ...++++. ..++|..+|....+.+. +.+.+.+++++++.+.++.+..++++|-+.| T Consensus 225 ~~~~l~~~-------------~~~~~~~i~~~~~~~~~---~~~~a~a~il~~i~l~~~~~~~~l~~r~~~~ 280 (284) T 2onk_C 225 AVVVIAYY-------------PMIAPTLIYERYLSEGL---SAAMPVAAILILLSLAVFVALRIIVGREDVS 280 (284) T ss_dssp HHHTTCCS-------------SCCHHHHHHHHHHHHCG---GGTHHHHHHHHHHHHHHHHHHHHTTC----- T ss_pred HHHHHHCC-------------CCHHHHHHHHHHHCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99988289-------------85299999999980589---9999999999999999999999999713774 |
>3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: f.58.1.1 | Back alignment and structure |
---|
>3dhw_A D-methionine transport system permease protein METI; ABC-transporter, methionine uptake transporter, membrane protein, amino-acid transport; 3.70A {Escherichia coli K12} SCOP: f.58.1.1 | Back alignment and structure |
---|
>2r6g_F Maltose transport system permease protein MALF; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} SCOP: e.70.1.1 f.58.1.1 PDB: 3fh6_F | Back alignment and structure |
---|
>2r6g_G Maltose transport system permease protein MALG; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} SCOP: f.58.1.1 PDB: 3fh6_G | Back alignment and structure |
---|
Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | E-value |
425 | phosphate ABC transporter, permease protein PstA [Candi | |||
d3dhwa1 | 203 | f.58.1.1 (A:6-208) D-methionine transport system permea | 7e-08 |
>d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease protein MetI {Escherichia coli [TaxId: 562]} Length = 203 | Back information, alignment and structure |
---|
class: Membrane and cell surface proteins and peptides fold: MetI-like superfamily: MetI-like family: MetI-like domain: D-methionine transport system permease protein MetI species: Escherichia coli [TaxId: 562] Score = 52.4 bits (125), Expect = 7e-08 Identities = 31/160 (19%), Positives = 61/160 (38%), Gaps = 2/160 (1%) Query: 200 VAGIGVAVVGSLYMMLIVIGLSFPLGIASAIYL-EEFSHKGFFSSFVQANINNLASVPSI 258 V G+ + + + P+G+ + + V A +N S+P I Sbjct: 5 VRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFI 64 Query: 259 VYGILGSAVLINFFKMPRSTALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGA 318 + + + L + P I AL +P+ + A+ +GA Sbjct: 65 ILLVWMIPFTRVIVGTSIG-LQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGA 123 Query: 319 SKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVG 358 + +Q V +LP A+P ++ +T++L +G +A VG Sbjct: 124 TPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVG 163 |
Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | Probability |
Target | 425 | phosphate ABC transporter, permease protein PstA [Candi | ||
d3d31c1 | 248 | Sulfate/molybdate ABC transporter, permease protein {Me | 99.92 | |
d2r6gg1 | 290 | Maltose transport system permease protein MalG {Escheri | 99.9 | |
d2onkc1 | 252 | Molybdate/tungstate transport system permease protein W | 99.9 | |
d2r6gf2 | 244 | Maltose transport system permease protein MalF {Escheri | 99.88 | |
d3dhwa1 | 203 | D-methionine transport system permease protein MetI {Es | 99.87 |
>d3d31c1 f.58.1.1 (C:13-260) Sulfate/molybdate ABC transporter, permease protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
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class: Membrane and cell surface proteins and peptides fold: MetI-like superfamily: MetI-like family: MetI-like domain: Sulfate/molybdate ABC transporter, permease protein species: Methanosarcina acetivorans [TaxId: 2214] Probab=99.92 E-value=1.1e-23 Score=166.71 Aligned_cols=194 Identities=21% Similarity=0.217 Sum_probs=157.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------ Q ss_conf 20266789999999999999999999999999864373024567898998876533699999999999986266------ Q gi|254780705|r 201 AGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSAVLINFFKM------ 274 (425) Q Consensus 201 ~Gi~~ai~gTl~~~~ia~~ia~pigv~~aiyl~e~a~~~~~~~~i~~~i~~la~vPSIv~Gl~gl~~~~~~~~~------ 274 (425) ...+.++..|++.+.++.++++++|+..|++++++ +.+.++.++........+|++++|+..+..+.+.... T Consensus 43 ~~~~~~l~~Sl~~a~~s~~i~~~lg~~~a~~~~~~--~~~~~~~~~~l~~~p~~ip~vv~~~~~~~~~~~~~~~~~~~~~ 120 (248) T d3d31c1 43 RSVISSIFLSLYAGFLATLLALLLGAPTGYILARF--DFPGKRLVESIIDVPVVVPHTVAGIALLTVFGSRGLIGEPLES 120 (248) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--CCTTHHHHHHHHHGGGTSCHHHHHHHHHHHHSTTSTTTGGGTT T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCC T ss_conf 89999999999999999999999999999999864--6512568999999999999720002445203432111112222 Q ss_pred ---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf ---63004689753345436689999999985110678989987077212777788397533258999999999987677 Q gi|254780705|r 275 ---PRSTALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGET 351 (425) Q Consensus 275 ---~~~~~l~g~~~l~~m~lP~i~~~~~~al~~vp~~~~eaa~~LGas~~~~~~~v~lp~a~pgi~~g~il~~~ra~GEt 351 (425) ...+.....++...+.+|++++..+++++++|++++|||..+|+|+||+++||++|.++|+++++.++++.++++|. T Consensus 121 ~~~~~~~~~~iii~~~~~~~p~~~~~~~~~l~~i~~~~~eAA~~lGas~~~~~~~I~lP~~~p~i~~~~~l~f~~~~~~~ 200 (248) T d3d31c1 121 YIQFRDALPGIVVAMLFVSMPYLANSAREGFKSVDPRLENAARSLGAPLWKAFFFVTLPLSARYLLIGSVMTWARAISEF 200 (248) T ss_dssp TCCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTCC T ss_pred CCCCCCCCCEEEHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 11245642001001101100368888899997103368999876310423477898899999999999999999999999 Q ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999985432101366561344557999999860366500699999999999999999999 Q gi|254780705|r 352 APLLFVGMVAFVTDYPVGVTDIATAFPVQIYLWAADAERPFVERTFGAILLLLIFLAVINT 412 (425) Q Consensus 352 a~ll~~~~~~~~~~~p~~~~~p~~tlp~~Iy~~~~~~~~~~~~~~~aa~lvLl~~~~~~n~ 412 (425) .+..++|+. ..+++..+|....+.+.+ .+.+.+++++++.+.+.. T Consensus 201 ~~~~~l~~~-------------~~~~~~~i~~~~~~~~~~---~a~a~a~il~~~~l~~~~ 245 (248) T d3d31c1 201 GAVVILAYY-------------PMVGPTLIYDRFISYGLS---ASRPIAVLLILVTLSIFL 245 (248) T ss_dssp HHHHHHHCT-------------TCCHHHHHHHHHHHSTTT---TTHHHHHHHHHHHHHHHH T ss_pred HHHHHHCCC-------------CCHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHHHHHH T ss_conf 988733189-------------840999999999955899---999999999999999999 |
>d2r6gg1 f.58.1.1 (G:7-296) Maltose transport system permease protein MalG {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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>d2onkc1 f.58.1.1 (C:1-252) Molybdate/tungstate transport system permease protein WtpB (ModB) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
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>d2r6gf2 f.58.1.1 (F:261-504) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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>d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease protein MetI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 425 | phosphate ABC transporter, permease protein PstA [ | ||
3dhw_A_ | 217 | (A:) D-methionine transport system permease protei | 2e-13 | |
3d31_C_ | 295 | (C:) Sulfate/molybdate ABC transporter, permease p | 1e-09 | |
2r6g_G_73-244 | 172 | (G:73-244) Maltose transport system permease prote | 2e-13 | |
2onk_C_69-249 | 181 | (C:69-249) Molybdate/tungstate ABC transporter, pe | 6e-13 | |
2r6g_F_269-326_360-453 | 152 | (F:269-326,F:360-453) Maltose transport system per | 3e-10 |
>3dhw_A (A:) D-methionine transport system permease protein METI; ABC-transporter, methionine uptake transporter, membrane protein, amino-acid transport; 3.70A {Escherichia coli K12}Length = 217 | Back alignment and structure |
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Score = 71.5 bits (175), Expect = 2e-13 Identities = 38/226 (16%), Positives = 77/226 (34%), Gaps = 19/226 (8%) Query: 200 VAGIGVAVVGSLYMMLIVIGLSFPLGIASAIYL-EEFSHKGFFSSFVQANINNLASVPSI 258 V G+ + + + P+G+ + + V A +N S+P I Sbjct: 10 VRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFI 69 Query: 259 VYGILGSAVLINFFKMPRSTALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGA 318 + + + L + P I AL +P+ + A+ +GA Sbjct: 70 ILLVWMIPFTRVIVGTS-IGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGA 128 Query: 319 SKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVGMVAFVTDYPVGVTDIATAFP 378 + +Q V +LP A+P ++ +T++L +G +A VG Sbjct: 129 TPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQ-------------- 174 Query: 379 VQIYLWAADAERPFVERTFGAILLLLIFLAVINTAMLWLRNRFKKR 424 Y + V ++LL+I + +I A + ++ Sbjct: 175 -IGYQYGYIGYNATV--MNTVLVLLVILVYLIQFAGDRIVRAVTRK 217 |
>3d31_C (C:) Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans}Length = 295 | Back alignment and structure |
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>2r6g_G (G:73-244) Maltose transport system permease protein MALG; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12}Length = 172 | Back alignment and structure |
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>2onk_C (C:69-249) Molybdate/tungstate ABC transporter, permease protein; membrane protein; 3.10A {Archaeoglobus fulgidus}Length = 181 | Back alignment and structure |
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>2r6g_F (F:269-326,F:360-453) Maltose transport system permease protein MALF; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12}Length = 152 | Back alignment and structure |
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Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 425 | phosphate ABC transporter, permease protein PstA [Candi | ||
3d31_C_ | 295 | Sulfate/molybdate ABC transporter, permease protei | 99.94 | |
3dhw_A_ | 217 | D-methionine transport system permease protein MET | 99.91 | |
2r6g_G_73-244 | 172 | Maltose transport system permease protein MALG; AB | 99.9 | |
2onk_C_69-249 | 181 | Molybdate/tungstate ABC transporter, permease prot | 99.89 | |
2r6g_F_269-326_360-453 | 152 | Maltose transport system permease protein MALF; AB | 99.8 |
>3d31_C (C:) Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} | Back alignment and structure |
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Probab=99.94 E-value=2.7e-25 Score=179.57 Aligned_cols=208 Identities=20% Similarity=0.194 Sum_probs=177.3 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---- Q ss_conf 0120266789999999999999999999999999864373024567898998876533699999999999986266---- Q gi|254780705|r 199 EVAGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSAVLINFFKM---- 274 (425) Q Consensus 199 e~~Gi~~ai~gTl~~~~ia~~ia~pigv~~aiyl~e~a~~~~~~~~i~~~i~~la~vPSIv~Gl~gl~~~~~~~~~---- 274 (425) ...+.+.++.+|++.++++++++.++|+++|++++++ +.+.++.++..+.....+|.++.++..+..+...... T Consensus 76 ~~~~~~~~l~~Tl~~~~~~~~~~~~ig~~~a~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (295) T 3d31_C 76 GNRSVISSIFLSLYAGFLATLLALLLGAPTGYILARF--DFPGKRLVESIIDVPVVVPHTVAGIALLTVFGSRGLIGEPL 153 (295) T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--CCTTHHHHHHHHHGGGTSCHHHHHHHHHHHHSTTSTTTGGG T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH T ss_conf 5989999999999999999999999999999999963--66479999999999999999999999999997266324303 Q ss_pred -----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf -----630046897533454366899999999851106789899870772127777883975332589999999999876 Q gi|254780705|r 275 -----PRSTALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALG 349 (425) Q Consensus 275 -----~~~~~l~g~~~l~~m~lP~i~~~~~~al~~vp~~~~eaa~~LGas~~~~~~~v~lp~a~pgi~~g~il~~~ra~G 349 (425) ...+.....+++.++.+|+++...+++++++|++++|||..+|||+||++++|++|+++|++++|.++++..+++ T Consensus 154 ~~~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~l~~i~~~l~eAA~~~Gas~~~~f~~I~lP~~~p~i~~~~~l~~~~~~~ 233 (295) T 3d31_C 154 ESYIQFRDALPGIVVAMLFVSMPYLANSAREGFKSVDPRLENAARSLGAPLWKAFFFVTLPLSARYLLIGSVMTWARAIS 233 (295) T ss_dssp TTTCCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHT T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 32167123999999999999999999999999975050589999876998262127746996999999999999999999 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 779999985432101366561344557999999860366500699999999999999999999999999974104 Q gi|254780705|r 350 ETAPLLFVGMVAFVTDYPVGVTDIATAFPVQIYLWAADAERPFVERTFGAILLLLIFLAVINTAMLWLRNRFKKR 424 (425) Q Consensus 350 Eta~ll~~~~~~~~~~~p~~~~~p~~tlp~~Iy~~~~~~~~~~~~~~~aa~lvLl~~~~~~n~~a~~lr~r~~~~ 424 (425) |+....++++. ..++++.+|....+.+.+. +++.+++++++++.++.+...+.+|.++| T Consensus 234 ~~~~~~~l~~~-------------~~~~~~~i~~~~~~~~~~~---~~a~~~i~~~~~~~~~~~~~~~~~r~~~~ 292 (295) T 3d31_C 234 EFGAVVILAYY-------------PMVGPTLIYDRFISYGLSA---SRPIAVLLILVTLSIFLVIRTLSAGWSIY 292 (295) T ss_dssp CCHHHHHHHCT-------------TCCHHHHHHHHHHHSTTTT---THHHHHHHHHHHHHHHHHHC--------- T ss_pred HHHHHHHHHCC-------------CCHHHHHHHHHHHHCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999589-------------7319999999999448999---99999999999999999999999760364 |
>3dhw_A (A:) D-methionine transport system permease protein METI; ABC-transporter, methionine uptake transporter, membrane protein, amino-acid transport; 3.70A {Escherichia coli K12} | Back alignment and structure |
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>2r6g_G (G:73-244) Maltose transport system permease protein MALG; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} | Back alignment and structure |
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>2onk_C (C:69-249) Molybdate/tungstate ABC transporter, permease protein; membrane protein; 3.10A {Archaeoglobus fulgidus} | Back alignment and structure |
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>2r6g_F (F:269-326,F:360-453) Maltose transport system permease protein MALF; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} | Back alignment and structure |
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