254780705

254780705

phosphate ABC transporter, permease protein PstA

GeneID in NCBI database:8209709Locus tag:CLIBASIA_02960
Protein GI in NCBI database:254780705Protein Accession:YP_003065118.1
Gene range:+(561345, 562622)Protein Length:425aa
Gene description:phosphate ABC transporter, permease protein PstA
COG prediction:[P] ABC-type phosphate transport system, permease component
KEGG prediction:pstA; phosphate ABC transporter, permease protein PstA; K02038 phosphate transport system permease protein
SEED prediction:Phosphate transport system permease protein PstA (TC 3.A.1.7.1)
Pathway involved in KEGG:ABC transporters [PATH:las02010]
Subsystem involved in SEED:High affinity phosphate transporter and control of PHO regulon;
Phosphate metabolism
sequencesequence profile

Prediction of Local Sequence Properties

SourceSummaryResult
scaler
NCBI Databasesequence
PSIPREDsecondary structure
SSPROsecondary structure
DISEMBLcoil and loop
DISEMBLflexible loop
SEGlow complexity
DISOPREDdisordered
DISEMBLmissing residues
DISPROdisordered
TMHMM7 TM-Helix
TOPPRED7 TM-Helix
HMMTOP8 TM-Helix
MEMSAT6 TM-Helix
MEMSAT_SVM5 TM-Helix
PHOBIUS7 TM-Helix
SignalP_HMMno
SignalP_NNno
COILScoiled coil
70% MSAconservation map
90% MSAconservation map
  
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-----
MKSFSINKKNLKYRYISEWLFRFYCVVAVLVVFVFLILLLSSIVSKGIGALWQTHISLPIEFSETIVDPQKKRFMDPAILLRADYNLLVRKALARKLSISDSNHALLRQASQMLSTTARYHLRKTLMTDPSLIGKTVEVSLLASANIDSALKGYLYSPANVHRMSDYQWKWFQKLDSDGALFLDFNYGFFINGASSRPEVAGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSAVLINFFKMPRSTALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVGMVAFVTDYPVGVTDIATAFPVQIYLWAADAERPFVERTFGAILLLLIFLAVINTAMLWLRNRFKKRW
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEEEEcHHHccccccccccHHHHHcccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHcccEEEEEEEEcHHHHHHHHHccccccccccccHHHHHHHHHHHHcccEEEEEEHHHHcccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEEEccHHHccccccccccHHHHHcccHHHHHHHHHHHHccccccccHHHHHHHHHHcHHHHHHHHHHHHcccHHccccEEEEEEccccHHHHcccccccHHHHHcccHHHHHHHHHHHHcccEEEEEccHHcccccccccHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
mksfsinkknlKYRYISEWLFRFYCVVAVLVVFVFLILLLSSIVSKGIGALWQThislpiefsetivdpqkkrfmdpailLRADYNLLVRKALARKLSISDSNHALLRQASQMLSTTARYHLRKtlmtdpsligktVEVSLLASANIDSalkgylyspanvhrmsDYQWKWFQKldsdgalfldfnygffingassrpevaGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEefshkgffSSFVQANINNLASVPSIVYGILGSAVLInffkmprstaLVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHvlplampailTGSTVSLARALGETAPLLFVGMVAFvtdypvgvtdiaTAFPVQIYLWaadaerpfveRTFGAILLLLIFLAVINTAMLWLRNRFKKRW
MKSFSINKKNLKYRYISEWLFRFYCVVAVLVVFVFLILLLSSIVSKGIGALWQTHISLPIEFSETIVDPQKKRFMDPAILLRADYNLLVRKALARKLSISDSNHALLRQASQMLSTTARYHLRKTLMTDPSLIGKTVEVSLLASANIDSALKGYLYSPANVHRMSDYQWKWFQKLDSDGALFLDFNYGFFINGASSRPEVAGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSAVLINFFKMPRSTALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVGMVAFVTDYPVGVTDIATAFPVQIYLWAADAERPFVERTFGAILLLLIFLAVINTAMLWLrnrfkkrw
MKSFSINKKNLKYRYISEWLFRFYCvvavlvvfvflilllssivsKGIGALWQTHISLPIEFSETIVDPQKKRFMDPAILLRADYNLLVRKALARKLSISDSNHALLRQASQMLSTTARYHLRKTLMTDPSLIGKTVEVSLLASANIDSALKGYLYSPANVHRMSDYQWKWFQKLDSDGALFLDFNYGFFINGASSRPEVAGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSAVLINFFKMPRSTALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVGMVAFVTDYPVGVTDIATAFPVQIYLWAADAERPFVERTfgailllliflaVINTAMLWLRNRFKKRW
**************YISEWLFRFYCVVAVLVVFVFLILLLSSIVSKGIGALWQTHISLPIEFSETIVD***********LLRADYNLLVRKAL********************L**TARYHLRKTLMTDPSLIGKTVEVSLLASANIDSALKGYLYSPANVHRMSDYQWKWFQKLDSDGALFLDFNYGFFINGASS**E*AGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSAVLINFFKMPRSTALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVGMVAFVTDYPVGVTDIATAFPVQIYLWAADAERPFVERTFGAILLLLIFLAVINTAMLWLRNRFKK**
MKSFSINKKNLKYRYISEWLFRFYCVVAVLVVFVFLILLLSSIVSKGIGALWQTHISLPIEFSETIVDPQKKRFMDPAILLRADYNLLVRKALARKLSISDSNHALLRQASQMLSTTARYHLRKTLMTDPSLIGKTVEVSLLASANIDSALKGYLYSPANVHRMSDYQWKWFQKLDSDGALFLDFNYGFFINGASSRPEVAGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSAVLINFFKMPRSTALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVGMVAFVTDYPVGVTDIATAFPVQIYLWAADAERPFVERTFGAILLLLIFLAVINTAMLWLRNRFKKRW
*KSFSINKKNLKYRYISEWLFRFYCVVAVLVVFVFLILLLSSIVSKGIGALWQTHISLPIEFSETIVDPQKKRFMDPAILLRADYNLLVRKALARKLSISDSNHALLRQASQMLSTTARYHLRKTLMTDPSLIGKTVEVSLLASANIDSALKGYLYSPANVHRMSDYQWKWFQKLDSDGALFLDFNYGFFINGASSRPEVAGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSAVLINFFKMPRSTALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVGMVAFVTDYPVGVTDIATAFPVQIYLWAADAERPFVERTFGAILLLLIFLAVINTAMLWLRNRFKKRW
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiii
xxxxxxxxxxxxxxxxxxxxxxxHHHHHHHHHHHHHHHHHHHHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxHHHHHHHHHHHHHHHHHHHHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxHHHHHHHHHHHHHHHHHHHHxxxxxxxxHHHHHHHHHHHHHHHHHHHHxxxxxxxxxxxxxxxxxxxxxxxxxHHHHHHHHHHHHHHHHHHHHxxxxxxHHHHHHHHHHHHHHHHHHHHxxxxxxxxxxxxxxxxxxxxxxxxxxHHHHHHHHHHHHHHHHHHHHxxxxxxxxx
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooo
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiii
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MKSFSINKKNLKYRYISEWLFRFYCVVAVLVVFVFLILLLSSIVSKGIGALWQTHISLPIEFSETIVDPQKKRFMDPAILLRADYNLLVRKALARKLSISDSNHALLRQASQMLSTTARYHLRKTLMTDPSLIGKTVEVSLLASANIDSALKGYLYSPANVHRMSDYQWKWFQKLDSDGALFLDFNYGFFINGASSRPEVAGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSAVLINFFKMPRSTALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVGMVAFVTDYPVGVTDIATAFPVQIYLWAADAERPFVERTFGAILLLLIFLAVINTAMLWLRNRFKKRW
MKSFSINKKNLKYRYISEWLFRFYCVVAVLVVFVFLILLLSSIVSKGIGALWQTHISLPIEFSETIVDPQKKRFMDPAILLRADYNLLVRKALARKLSISDSNHALLRQASQMLSTTARYHLRKTLMTDPSLIGKTVEVSLLASANIDSALKGYLYSPANVHRMSDYQWKWFQKLDSDGALFLDFNYGFFINGASSRPEVAGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSAVLINFFKMPRSTALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVGMVAFVTDYPVGVTDIATAFPVQIYLWAADAERPFVERTFGAILLLLIFLAVINTAMLWLRNRFKKRW
MKSFSINKKNLKYRYISEWLFRFYCVVAVLVVFVFLILLLSSIVSKGIGALWQTHISLPIEFSETIVDPQKKRFMDPAILLRADYNLLVRKALARKLSISDSNHALLRQASQMLSTTARYHLRKTLMTDPSLIGKTVEVSLLASANIDSALKGYLYSPANVHRMSDYQWKWFQKLDSDGALFLDFNYGFFINGASSRPEVAGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSAVLINFFKMPRSTALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVGMVAFVTDYPVGVTDIATAFPVQIYLWAADAERPFVERTFGAILLLLIFLAVINTAMLWLRNRFKKRW

Close Homologs Detected by BLAST or PSI-BLAST

Homolog within the Genome Detected by BLAST

Original result of BLAST against C. L. asiaticus genome

IdentityAlignment graphLength Definition E-value
Target425 phosphate ABC transporter, permease protein PstA [Candi
255764486493 ABC transporter, membrane spanning protein [Candid 4e-13
254780341281 proline/glycine betaine ABC transporter, permease 0.006
>gi|255764486|ref|YP_003065119.2| ABC transporter, membrane spanning protein [Candidatus Liberibacter asiaticus str. psy62] Length = 493 Back     alignment 
 Score = 67.4 bits (163), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 82/162 (50%), Gaps = 18/162 (11%)

Query: 207 VVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSA 266
           ++G+ Y+  I +  S P+G+  AIY+ E++ K    + ++     L  +P+IVYG    +
Sbjct: 257 LIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKL-RAVIKPITEMLVGIPTIVYGFFALS 315

Query: 267 VLINFFK-----------------MPRSTALVGGLILALMTLPSIIIATGVALRTVPSSI 309
           ++  F +                 +   + L  GL++ +M +P +   +   + ++P S+
Sbjct: 316 LVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPRSL 375

Query: 310 RSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGET 351
           R  +LGLGA++ +T+ + + P A P I     ++ +R +GET
Sbjct: 376 RDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGET 417
>gi|254780341|ref|YP_003064754.1| proline/glycine betaine ABC transporter, permease protein [Candidatus Liberibacter asiaticus str. psy62] Length = 281 Back     alignment 
 Score = 33.5 bits (75), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 64/127 (50%), Gaps = 16/127 (12%)

Query: 223 PLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSAVLINFFKMPRSTALVG 282
           PLG+ +A Y         F S ++  ++++ ++P+ VY ++ + VL     +P   A + 
Sbjct: 113 PLGVLAAWYPR-------FYSIIRLFLDSMQTIPTFVY-LIPALVLFGLGMVPGIVATI- 163

Query: 283 GLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHV-LPLAMPAILTGST 341
                + ++P+ +  T + + + P  ++ AA   GA+  Q VF  V LP A+P I+   T
Sbjct: 164 -----VFSIPTSVRLTRLGIISTPPILKEAACAFGATPFQ-VFRKVELPFAIPQIVASLT 217

Query: 342 VSLARAL 348
            ++  +L
Sbjct: 218 QTIMLSL 224

Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations

Original result of PSI-BLAST first 2 iterations

IdentityAlignment graphLength Definition Round E-value
Target425 phosphate ABC transporter, permease protein PstA [Candi
315121870427 phosphate ABC transporter, permease protein PstA [Candi 1 0.0
222084781444 phosphate ABC transporter, permease protein PstA [Agrob 1 1e-132
306843559436 phosphate ABC transporter, permease protein PstA [Bruce 1 1e-132
153008105438 phosphate ABC transporter inner membrane subunit PstA [ 1 1e-131
190890214440 phosphate ABC transporter permease [Rhizobium etli CIAT 1 1e-131
327192730440 phosphate ABC transporter, permease protein [Rhizobium 1 1e-131
23502988436 phosphate ABC transporter permease [Brucella suis 1330] 1 1e-131
161620050436 phosphate ABC transporter, permease protein PstA [Bruce 1 1e-131
254713458436 phosphate ABC transporter, permease protein PstA [Bruce 1 1e-131
254700771436 phosphate ABC transporter, permease protein PstA [Bruce 1 1e-131
>gi|315121870|ref|YP_004062359.1| phosphate ABC transporter, permease protein PstA [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 427 Back     alignment and organism information
 Score =  692 bits (1786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/427 (79%), Positives = 385/427 (90%), Gaps = 2/427 (0%)

Query: 1   MKSFSINKKNLKYRYISEWLFRFYCVVAVLVVFVFLILLLSSIVSKGIGALWQTHISLPI 60
           MKSFS+NKK LK RYISE+LFRF CV+AVL+V  FLI+ L SIVSKGIG LWQTHISLPI
Sbjct: 1   MKSFSVNKKKLKSRYISEFLFRFSCVIAVLIVLAFLIIFLYSIVSKGIGTLWQTHISLPI 60

Query: 61  EFSETIVDPQKKRFMDPAILLRADYNLLVRKALARKLSISDSNHALLRQASQMLSTTARY 120
           EFSETI+DP K RF DP+IL +A+YNLLV+ ALARKL ISDS H++L Q S+M+S+T RY
Sbjct: 61  EFSETIIDPNKNRFKDPSILQKANYNLLVQMALARKLGISDSEHSMLAQVSEMISSTVRY 120

Query: 121 HLRKTLMTDPSLIGKTVEVSLLASANIDSALKGYL-YS-PANVHRMSDYQWKWFQKLDSD 178
            LR TL+ DPSLIGKTVE+ LLASANIDSALKGY+ +S PA V ++SD Q KWF++L +D
Sbjct: 121 RLRNTLLADPSLIGKTVEMPLLASANIDSALKGYIDFSLPATVRKISDDQLKWFRQLVAD 180

Query: 179 GALFLDFNYGFFINGASSRPEVAGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHK 238
           G++   FNYGFF+NGASSRPE AGIGVA+VGSLYM+LIVI LSFP+GIASAIYLEEF+ K
Sbjct: 181 GSISFHFNYGFFVNGASSRPESAGIGVAIVGSLYMILIVIALSFPVGIASAIYLEEFAPK 240

Query: 239 GFFSSFVQANINNLASVPSIVYGILGSAVLINFFKMPRSTALVGGLILALMTLPSIIIAT 298
            FFSSF+QANINNLASVPS+VYGILGSA+L+NFF+MPRST+LVGGLILA+MTLPSIIIA 
Sbjct: 241 NFFSSFIQANINNLASVPSVVYGILGSAMLVNFFQMPRSTSLVGGLILAIMTLPSIIIAA 300

Query: 299 GVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVG 358
           GVALRTVPSSIRSAALGLGASKVQTVFHHVLPLA+PAILTGSTVSLARALGETAPLLFVG
Sbjct: 301 GVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAVPAILTGSTVSLARALGETAPLLFVG 360

Query: 359 MVAFVTDYPVGVTDIATAFPVQIYLWAADAERPFVERTFGAILLLLIFLAVINTAMLWLR 418
           MVAFVTDYP G+TDIATAFPVQ+YLW +DAER FVE+TFG+ILLLL+FLAVINT MLWLR
Sbjct: 361 MVAFVTDYPEGITDIATAFPVQVYLWTSDAERLFVEKTFGSILLLLVFLAVINTVMLWLR 420

Query: 419 NRFKKRW 425
           NRF+K W
Sbjct: 421 NRFRKHW 427



Species: Candidatus Liberibacter solanacearum
Genus: Candidatus Liberibacter
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria
>gi|222084781|ref|YP_002543310.1| phosphate ABC transporter, permease protein PstA [Agrobacterium radiobacter K84] Length = 444 Back     alignment and organism information
>gi|306843559|ref|ZP_07476160.1| phosphate ABC transporter, permease protein PstA [Brucella sp. BO1] Length = 436 Back     alignment and organism information
>gi|153008105|ref|YP_001369320.1| phosphate ABC transporter inner membrane subunit PstA [Ochrobactrum anthropi ATCC 49188] Length = 438 Back     alignment and organism information
>gi|190890214|ref|YP_001976756.1| phosphate ABC transporter permease [Rhizobium etli CIAT 652] Length = 440 Back     alignment and organism information
>gi|327192730|gb|EGE59666.1| phosphate ABC transporter, permease protein [Rhizobium etli CNPAF512] Length = 440 Back     alignment and organism information
>gi|23502988|ref|NP_699115.1| phosphate ABC transporter permease [Brucella suis 1330] Length = 436 Back     alignment and organism information
>gi|161620050|ref|YP_001593937.1| phosphate ABC transporter, permease protein PstA [Brucella canis ATCC 23365] Length = 436 Back     alignment and organism information
>gi|254713458|ref|ZP_05175269.1| phosphate ABC transporter, permease protein PstA [Brucella ceti M644/93/1] Length = 436 Back     alignment and organism information
>gi|254700771|ref|ZP_05162599.1| phosphate ABC transporter, permease protein PstA [Brucella suis bv. 5 str. 513] Length = 436 Back     alignment and organism information

Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch

Conserved Domains in CDD Database Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Original result of RPS-BLASTagainst CDD database part II

IdentityAlignment graphLength Definition E-value
Target425 phosphate ABC transporter, permease protein PstA [Candi
TIGR00974271 TIGR00974, 3a0107s02c, phosphate ABC transporter, perme 2e-48
COG0573310 COG0573, PstC, ABC-type phosphate transport system, per 5e-27
TIGR02138295 TIGR02138, phosphate_pstC, phosphate ABC transporter, p 1e-24
COG4149225 COG4149, ModC, ABC-type molybdate transport system, per 7e-10
COG1177267 COG1177, PotC, ABC-type spermidine/putrescine transport 8e-10
COG0555274 COG0555, CysU, ABC-type sulfate transport system, perme 4e-09
COG2011222 COG2011, AbcD, ABC-type metal ion transport system, per 1e-06
COG1178 540 COG1178, ThiP, ABC-type Fe3+ transport system, permease 2e-05
COG0581292 COG0581, PstA, ABC-type phosphate transport system, per 2e-58
pfam11812155 pfam11812, DUF3333, Domain of unknown function (DUF3333 4e-35
PRK11268295 PRK11268, pstA, phosphate transporter permease subunit 8e-19
cd06261190 cd06261, TM_PBP2, Transmembrane subunit (TM) found in P 2e-14
PRK11275319 PRK11275, pstC, phosphate transporter permease subunit 6e-08
COG1174221 COG1174, OpuBB, ABC-type proline/glycine betaine transp 9e-08
COG4176290 COG4176, ProW, ABC-type proline/glycine betaine transpo 3e-06
PRK10952355 PRK10952, PRK10952, glycine betaine transporter membran 6e-05
TIGR03255272 TIGR03255, PhnV, 2-aminoethylphosphonate ABC transport 2e-04
TIGR03416267 TIGR03416, ABC_choXWV_perm, choline ABC transporter, pe 6e-04
COG1178540 COG1178, ThiP, ABC-type Fe3+ transport system, permease 0.001
COG1173289 COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel t 0.001
COG4590733 COG4590, COG4590, ABC-type uncharacterized transport sy 3e-10
TIGR02141208 TIGR02141, modB_ABC, molybdate ABC transporter, permeas 9e-08
TIGR01581225 TIGR01581, Mo_ABC_porter, NifC-like ABC-type porter 4e-06
pfam00528183 pfam00528, BPD_transp_1, Binding-protein-dependent tran 5e-09
TIGR02139265 TIGR02139, permease_CysT, sulfate ABC transporter, perm 9e-06
PRK09421229 PRK09421, modB, molybdate ABC transporter permease prot 3e-05
COG0600258 COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate t 1e-04
CHL00187237 CHL00187, cysT, sulfate transport protein; Provisional 3e-04
COG1176287 COG1176, PotB, ABC-type spermidine/putrescine transport 3e-04
TIGR03226312 TIGR03226, PhnU, 2-aminoethylphosphonate ABC transporte 0.001
PRK10971277 PRK10971, PRK10971, sulfate/thiosulfate transporter sub 0.001
PRK15050296 PRK15050, PRK15050, 2-aminoethylphosphonate transport s 0.001
PRK09497285 PRK09497, potB, spermidine/putrescine ABC transporter m 0.002
>gnl|CDD|162141 TIGR00974, 3a0107s02c, phosphate ABC transporter, permease protein PstA Back     alignment and domain information
>gnl|CDD|30918 COG0573, PstC, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|162724 TIGR02138, phosphate_pstC, phosphate ABC transporter, permease protein PstC Back     alignment and domain information
>gnl|CDD|33901 COG4149, ModC, ABC-type molybdate transport system, permease component [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|31370 COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|30901 COG0555, CysU, ABC-type sulfate transport system, permease component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|32194 COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|31371 COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|30926 COG0581, PstA, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|152248 pfam11812, DUF3333, Domain of unknown function (DUF3333) Back     alignment and domain information
>gnl|CDD|183065 PRK11268, pstA, phosphate transporter permease subunit PtsA; Provisional Back     alignment and domain information
>gnl|CDD|119394 cd06261, TM_PBP2, Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs Back     alignment and domain information
>gnl|CDD|183070 PRK11275, pstC, phosphate transporter permease subunit PstC; Provisional Back     alignment and domain information
>gnl|CDD|31367 COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|33916 COG4176, ProW, ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|182861 PRK10952, PRK10952, glycine betaine transporter membrane protein; Provisional Back     alignment and domain information
>gnl|CDD|132299 TIGR03255, PhnV, 2-aminoethylphosphonate ABC transport system, membrane component PhnV Back     alignment and domain information
>gnl|CDD|132457 TIGR03416, ABC_choXWV_perm, choline ABC transporter, permease protein Back     alignment and domain information
>gnl|CDD|31371 COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|31366 COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|34228 COG4590, COG4590, ABC-type uncharacterized transport system, permease component [General function prediction only] Back     alignment and domain information
>gnl|CDD|162726 TIGR02141, modB_ABC, molybdate ABC transporter, permease protein Back     alignment and domain information
>gnl|CDD|130643 TIGR01581, Mo_ABC_porter, NifC-like ABC-type porter Back     alignment and domain information
>gnl|CDD|144205 pfam00528, BPD_transp_1, Binding-protein-dependent transport system inner membrane component Back     alignment and domain information
>gnl|CDD|131194 TIGR02139, permease_CysT, sulfate ABC transporter, permease protein CysT Back     alignment and domain information
>gnl|CDD|181841 PRK09421, modB, molybdate ABC transporter permease protein; Reviewed Back     alignment and domain information
>gnl|CDD|30945 COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|164564 CHL00187, cysT, sulfate transport protein; Provisional Back     alignment and domain information
>gnl|CDD|31369 COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|132270 TIGR03226, PhnU, 2-aminoethylphosphonate ABC transporter, permease protein Back     alignment and domain information
>gnl|CDD|182873 PRK10971, PRK10971, sulfate/thiosulfate transporter subunit; Provisional Back     alignment and domain information
>gnl|CDD|185010 PRK15050, PRK15050, 2-aminoethylphosphonate transport system permease PhnU; Provisional Back     alignment and domain information
>gnl|CDD|181910 PRK09497, potB, spermidine/putrescine ABC transporter membrane protein; Reviewed Back     alignment and domain information

Conserved Domains in CDD Database Detected by HHsearch

Original result of HHsearch against CDD database

IdentityAlignment graphLength Definition Probability
Target 425 phosphate ABC transporter, permease protein PstA [Candi
COG0581292 PstA ABC-type phosphate transport system, permease comp 100.0
TIGR00974302 3a0107s02c phosphate ABC transporter, permease protein 100.0
PRK11275319 pstC phosphate transporter permease subunit; Provisiona 100.0
PRK10971277 sulfate/thiosulfate transporter subunit; Provisional 99.97
PRK09494219 glnP glutamine ABC transporter permease protein; Review 99.74
PRK10352314 nickel transporter permease NikB; Provisional 99.42
PRK10914339 dipeptide transporter permease DppB; Provisional 99.42
COG0601317 DppB ABC-type dipeptide/oligopeptide/nickel transport s 99.34
PRK11268292 pstA phosphate transporter permease subunit; Provisiona 100.0
TIGR02138317 phosphate_pstC phosphate ABC transporter, permease prot 100.0
COG0573310 PstC ABC-type phosphate transport system, permease comp 100.0
pfam11812155 DUF3333 Domain of unknown function (DUF3333). This fami 100.0
PRK09421229 modB molybdate ABC transporter permease protein; Review 99.97
TIGR02141212 modB_ABC molybdate ABC transporter, permease protein; I 99.97
COG4590733 ABC-type uncharacterized transport system, permease com 99.97
COG4149225 ModC ABC-type molybdate transport system, permease comp 99.97
TIGR01581226 Mo_ABC_porter NifC-like ABC-type porter; InterPro: IPR0 99.96
COG0555274 CysU ABC-type sulfate transport system, permease compon 99.96
TIGR02139265 permease_CysT sulfate ABC transporter, permease protein 99.96
PRK10592281 putrescine transporter subunit: membrane component of A 99.96
PRK11602291 cysW sulfate/thiosulfate transporter permease subunit; 99.96
TIGR03255272 PhnV 2-aminoethylphosphonate ABC transport system, memb 99.96
COG1177267 PotC ABC-type spermidine/putrescine transport system, p 99.95
TIGR00969280 3a0106s02 sulfate ABC transporter, permease protein; In 99.95
PRK09500257 potC spermidine/putrescine ABC transporter membrane pro 99.95
PRK10782217 DL-methionine transporter permease subunit; Provisional 99.94
TIGR03226312 PhnU 2-aminoethylphosphonate ABC transporter, permease 99.93
TIGR03262546 PhnU2 putative 2-aminoethylphosphonate ABC transport sy 99.93
PRK09433536 thiP thiamine transporter membrane protein; Reviewed 99.91
PRK09497285 potB spermidine/putrescine ABC transporter membrane pro 99.91
TIGR02140275 permease_CysW sulfate ABC transporter, permease protein 99.9
TIGR03262 546 PhnU2 putative 2-aminoethylphosphonate ABC transport sy 99.9
COG1178540 ThiP ABC-type Fe3+ transport system, permease component 99.9
COG1178 540 ThiP ABC-type Fe3+ transport system, permease component 99.89
PRK10683317 putrescine transporter subunit: membrane component of A 99.88
PRK09433 536 thiP thiamine transporter membrane protein; Reviewed 99.85
COG4662227 TupA ABC-type tungstate transport system, periplasmic c 99.83
PRK10952354 glycine betaine transporter membrane protein; Provision 99.82
COG4208287 CysW ABC-type sulfate transport system, permease compon 99.82
COG2011222 AbcD ABC-type metal ion transport system, permease comp 99.81
COG1176287 PotB ABC-type spermidine/putrescine transport system, p 99.81
PRK10998296 malG maltose transporter permease; Provisional 99.79
PRK10160275 taurine transporter subunit; Provisional 99.77
PRK11365263 ssuC alkanesulfonate transporter permease subunit; Prov 99.77
pfam00528183 BPD_transp_1 Binding-protein-dependent transport system 99.76
COG1175295 UgpA ABC-type sugar transport systems, permease compone 99.74
PRK10561280 glycerol-3-phosphate transporter permease; Provisional 99.73
COG0395281 UgpE ABC-type sugar transport system, permease componen 99.72
COG0765222 HisM ABC-type amino acid transport system, permease com 99.72
PRK11123238 arginine transporter permease subunit ArtQ; Provisional 99.71
PRK10973281 glycerol-3-phosphate transporter membrane protein; Prov 99.7
COG0600258 TauC ABC-type nitrate/sulfonate/bicarbonate transport s 99.68
COG4132282 ABC-type uncharacterized transport system, permease com 99.65
COG3639283 ABC-type phosphate/phosphonate transport system, permea 99.62
PRK10999520 malF maltose transporter membrane protein; Provisional 99.61
COG1173289 DppC ABC-type dipeptide/oligopeptide/nickel transport s 99.53
PRK09881296 ATP-dependent peptide transporter membrane subunit; Pro 99.51
PRK10417272 nikC nickel transporter permease NikC; Provisional 99.47
PRK10913300 dipeptide transporter; Provisional 99.47
COG3833282 MalG ABC-type maltose transport systems, permease compo 99.42
COG4215230 ArtQ ABC-type arginine transport system, permease compo 99.39
PRK09471306 oppB oligopeptide transporter permease; Reviewed 99.35
COG4209309 LplB ABC-type polysaccharide transport system, permease 99.23
TIGR03004216 ectoine_ehuC ectoine/hydroxyectoine ABC transporter, pe 98.91
TIGR01097192 3A0109s02M phosphonate ABC transporter, permease protei 98.81
TIGR02790258 nickel_nikC nickel ABC transporter, permease subunit Ni 98.75
COG4986523 ABC-type anion transport system, duplicated permease co 98.61
COG4239341 ABC-type uncharacterized transport system, permease com 98.58
TIGR01253 519 thiP thiamine/thiamine pyrophosphate ABC transporter, p 98.44
COG4135 551 ABC-type uncharacterized transport system, permease com 97.97
CHL00187235 cysT sulfate transport protein; Provisional 99.92
cd06261190 TM_PBP2 Transmembrane subunit (TM) found in Periplasmic 99.88
COG1174221 OpuBB ABC-type proline/glycine betaine transport system 99.76
COG4135551 ABC-type uncharacterized transport system, permease com 98.46
COG4171296 SapC ABC-type antimicrobial peptide transport system, p 98.26
TIGR03416267 ABC_choXWV_perm choline ABC transporter, permease prote 99.83
COG4176290 ProW ABC-type proline/glycine betaine transport system, 99.71
PRK11122222 artM arginine transporter permease subunit ArtM; Provis 99.62
COG4160228 ArtM ABC-type arginine/histidine transport system, perm 98.88
TIGR03003218 ectoine_ehuD ectoine/hydroxyectoine ABC transporter, pe 98.61
COG4986 523 ABC-type anion transport system, duplicated permease co 98.51
COG4597397 BatB ABC-type amino acid transport system, permease com 97.9
TIGR01183203 ntrB nitrate ABC transporter, permease protein; InterPr 97.85
TIGR02789315 nickel_nikB nickel ABC transporter, permease subunit Ni 97.82
COG4174364 ABC-type uncharacterized transport system, permease com 94.86
TIGR01253519 thiP thiamine/thiamine pyrophosphate ABC transporter, p 98.81
TIGR0172699 HEQRo_perm_3TM amino acid ABC transporter, permease pro 96.73
COG4168321 SapB ABC-type antimicrobial peptide transport system, p 94.62
COG0390256 ABC-type uncharacterized transport system, permease com 94.46
pfam03649250 UPF0014 Uncharacterized protein family (UPF0014). 92.66
TIGR01478315 STEVOR variant surface antigen, stevor family; InterPro 91.23
>COG0581 PstA ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00974 3a0107s02c phosphate ABC transporter, permease protein PstA; InterPro: IPR005672 Bacterial binding protein-dependent transport systems , are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system Back     alignment and domain information
>PRK11275 pstC phosphate transporter permease subunit; Provisional Back     alignment and domain information
>PRK10971 sulfate/thiosulfate transporter subunit; Provisional Back     alignment and domain information
>PRK09494 glnP glutamine ABC transporter permease protein; Reviewed Back     alignment and domain information
>PRK10352 nickel transporter permease NikB; Provisional Back     alignment and domain information
>PRK10914 dipeptide transporter permease DppB; Provisional Back     alignment and domain information
>COG0601 DppB ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK11268 pstA phosphate transporter permease subunit; Provisional Back     alignment and domain information
>TIGR02138 phosphate_pstC phosphate ABC transporter, permease protein PstC; InterPro: IPR011864 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems Back     alignment and domain information
>COG0573 PstC ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism] Back     alignment and domain information
>pfam11812 DUF3333 Domain of unknown function (DUF3333) Back     alignment and domain information
>PRK09421 modB molybdate ABC transporter permease protein; Reviewed Back     alignment and domain information
>TIGR02141 modB_ABC molybdate ABC transporter, permease protein; InterPro: IPR011867 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems Back     alignment and domain information
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] Back     alignment and domain information
>COG4149 ModC ABC-type molybdate transport system, permease component [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR01581 Mo_ABC_porter NifC-like ABC-type porter; InterPro: IPR006469 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems Back     alignment and domain information
>COG0555 CysU ABC-type sulfate transport system, permease component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02139 permease_CysT sulfate ABC transporter, permease protein CysT; InterPro: IPR011865 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems Back     alignment and domain information
>PRK10592 putrescine transporter subunit: membrane component of ABC superfamily; Provisional Back     alignment and domain information
>PRK11602 cysW sulfate/thiosulfate transporter permease subunit; Provisional Back     alignment and domain information
>TIGR03255 PhnV 2-aminoethylphosphonate ABC transport system, membrane component PhnV Back     alignment and domain information
>COG1177 PotC ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00969 3a0106s02 sulfate ABC transporter, permease protein; InterPro: IPR005667 Bacterial binding protein-dependent transport systems , are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system Back     alignment and domain information
>PRK09500 potC spermidine/putrescine ABC transporter membrane protein; Reviewed Back     alignment and domain information
>PRK10782 DL-methionine transporter permease subunit; Provisional Back     alignment and domain information
>TIGR03226 PhnU 2-aminoethylphosphonate ABC transporter, permease protein Back     alignment and domain information
>TIGR03262 PhnU2 putative 2-aminoethylphosphonate ABC transport system, permease protein Back     alignment and domain information
>PRK09433 thiP thiamine transporter membrane protein; Reviewed Back     alignment and domain information
>PRK09497 potB spermidine/putrescine ABC transporter membrane protein; Reviewed Back     alignment and domain information
>TIGR02140 permease_CysW sulfate ABC transporter, permease protein CysW; InterPro: IPR011866 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems Back     alignment and domain information
>TIGR03262 PhnU2 putative 2-aminoethylphosphonate ABC transport system, permease protein Back     alignment and domain information
>COG1178 ThiP ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG1178 ThiP ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10683 putrescine transporter subunit: membrane component of ABC superfamily; Provisional Back     alignment and domain information
>PRK09433 thiP thiamine transporter membrane protein; Reviewed Back     alignment and domain information
>COG4662 TupA ABC-type tungstate transport system, periplasmic component [Coenzyme metabolism] Back     alignment and domain information
>PRK10952 glycine betaine transporter membrane protein; Provisional Back     alignment and domain information
>COG4208 CysW ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG2011 AbcD ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG1176 PotB ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10998 malG maltose transporter permease; Provisional Back     alignment and domain information
>PRK10160 taurine transporter subunit; Provisional Back     alignment and domain information
>PRK11365 ssuC alkanesulfonate transporter permease subunit; Provisional Back     alignment and domain information
>pfam00528 BPD_transp_1 Binding-protein-dependent transport system inner membrane component Back     alignment and domain information
>COG1175 UgpA ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK10561 glycerol-3-phosphate transporter permease; Provisional Back     alignment and domain information
>COG0395 UgpE ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG0765 HisM ABC-type amino acid transport system, permease component [Amino acid transport and metabolism] Back     alignment and domain information
>PRK11123 arginine transporter permease subunit ArtQ; Provisional Back     alignment and domain information
>PRK10973 glycerol-3-phosphate transporter membrane protein; Provisional Back     alignment and domain information
>COG0600 TauC ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG4132 ABC-type uncharacterized transport system, permease component [General function prediction only] Back     alignment and domain information
>COG3639 ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10999 malF maltose transporter membrane protein; Provisional Back     alignment and domain information
>COG1173 DppC ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK09881 ATP-dependent peptide transporter membrane subunit; Provisional Back     alignment and domain information
>PRK10417 nikC nickel transporter permease NikC; Provisional Back     alignment and domain information
>PRK10913 dipeptide transporter; Provisional Back     alignment and domain information
>COG3833 MalG ABC-type maltose transport systems, permease component [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG4215 ArtQ ABC-type arginine transport system, permease component [Amino acid transport and metabolism] Back     alignment and domain information
>PRK09471 oppB oligopeptide transporter permease; Reviewed Back     alignment and domain information
>COG4209 LplB ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR03004 ectoine_ehuC ectoine/hydroxyectoine ABC transporter, permease protein EhuC; InterPro: IPR014342 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems Back     alignment and domain information
>TIGR01097 3A0109s02M phosphonate ABC transporter, permease protein; InterPro: IPR005769 Bacterial binding protein-dependent transport systems , are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system Back     alignment and domain information
>TIGR02790 nickel_nikC nickel ABC transporter, permease subunit NikC; InterPro: IPR014157 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems Back     alignment and domain information
>COG4986 ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG4239 ABC-type uncharacterized transport system, permease component [General function prediction only] Back     alignment and domain information
>TIGR01253 thiP thiamine/thiamine pyrophosphate ABC transporter, permease protein; InterPro: IPR005947 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems Back     alignment and domain information
>COG4135 ABC-type uncharacterized transport system, permease component [General function prediction only] Back     alignment and domain information
>CHL00187 cysT sulfate transport protein; Provisional Back     alignment and domain information
>cd06261 TM_PBP2 Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs Back     alignment and domain information
>COG1174 OpuBB ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism] Back     alignment and domain information
>COG4135 ABC-type uncharacterized transport system, permease component [General function prediction only] Back     alignment and domain information
>COG4171 SapC ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms] Back     alignment and domain information
>TIGR03416 ABC_choXWV_perm choline ABC transporter, permease protein Back     alignment and domain information
>COG4176 ProW ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism] Back     alignment and domain information
>PRK11122 artM arginine transporter permease subunit ArtM; Provisional Back     alignment and domain information
>COG4160 ArtM ABC-type arginine/histidine transport system, permease component [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03003 ectoine_ehuD ectoine/hydroxyectoine ABC transporter, permease protein EhuD; InterPro: IPR014341 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems Back     alignment and domain information
>COG4986 ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG4597 BatB ABC-type amino acid transport system, permease component [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR01183 ntrB nitrate ABC transporter, permease protein; InterPro: IPR005889 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems Back     alignment and domain information
>TIGR02789 nickel_nikB nickel ABC transporter, permease subunit NikB; InterPro: IPR014156 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems Back     alignment and domain information
>COG4174 ABC-type uncharacterized transport system, permease component [General function prediction only] Back     alignment and domain information
>TIGR01253 thiP thiamine/thiamine pyrophosphate ABC transporter, permease protein; InterPro: IPR005947 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems Back     alignment and domain information
>TIGR01726 HEQRo_perm_3TM amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; InterPro: IPR010065 This entry represents one of several classes of multiple membrane spanning regions found in the inner membrane component of binding-protein-dependent transport systems Back     alignment and domain information
>COG4168 SapB ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms] Back     alignment and domain information
>COG0390 ABC-type uncharacterized transport system, permease component [General function prediction only] Back     alignment and domain information
>pfam03649 UPF0014 Uncharacterized protein family (UPF0014) Back     alignment and domain information
>TIGR01478 STEVOR variant surface antigen, stevor family; InterPro: IPR006374 Malaria is still a major cause of mortality in many areas of the world Back     alignment and domain information

Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch

Homologous Structures Detected by PSI-BLAST against Nonredundant Database

Original result of PSI-BLAST

No homologous structure with e-value below 0.005

Homologous Structures in PDB70 Database Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

IdentityAlignment graphLength Definition E-value
Target425 phosphate ABC transporter, permease protein PstA [Candi
3d31_C295 Sulfate/molybdate ABC transporter, permease protein; AT 2e-11
3dhw_A217 D-methionine transport system permease protein METI; AB 1e-07
2r6g_F514 Maltose transport system permease protein MALF; ABC tra 2e-06
>3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: f.58.1.1 Length = 295 Back     alignment and structure
 Score = 66.2 bits (161), Expect = 2e-11
 Identities = 43/229 (18%), Positives = 81/229 (35%), Gaps = 31/229 (13%)

Query: 206 AVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGS 265
           ++  SLY   +   L+  LG  +   L  F   G     V++ I+    VP  V GI   
Sbjct: 83  SIFLSLYAGFLATLLALLLGAPTGYILARFDFPG--KRLVESIIDVPVVVPHTVAGIALL 140

Query: 266 AVLINFFKMPRSTALVGG---------LILALMTLPSIIIATGVALRTVPSSIRSAALGL 316
            V  +   +                  + +  +++P +  +     ++V   + +AA  L
Sbjct: 141 TVFGSRGLIGEPLESYIQFRDALPGIVVAMLFVSMPYLANSAREGFKSVDPRLENAARSL 200

Query: 317 GASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVGMVAFVTDYPVGVTDIATA 376
           GA   +  F   LPL+   +L GS ++ ARA+ E   ++ +     V             
Sbjct: 201 GAPLWKAFFFVTLPLSARYLLIGSVMTWARAISEFGAVVILAYYPMVG------------ 248

Query: 377 FPVQIYLWAADAERPFVERTFGAILLLLIFLAVINTAMLWLRNRFKKRW 425
            P  IY         F+     A   + + L ++  ++  +       W
Sbjct: 249 -PTLIYDR-------FISYGLSASRPIAVLLILVTLSIFLVIRTLSAGW 289
>3dhw_A D-methionine transport system permease protein METI; ABC-transporter, methionine uptake transporter, membrane protein, amino-acid transport; 3.70A {Escherichia coli K12} SCOP: f.58.1.1 Length = 217 Back     alignment and structure
>2r6g_F Maltose transport system permease protein MALF; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} SCOP: e.70.1.1 f.58.1.1 PDB: 3fh6_F Length = 514 Back     alignment and structure

Homologous Structures in PDB70 Database Detected by HHsearch

Original result of HHsearch against PDB70 database

IdentityAlignment graphLength Definition Probability
Target425 phosphate ABC transporter, permease protein PstA [Candi
2onk_C284 Molybdate/tungstate ABC transporter, permease protein; 99.93
3d31_C295 Sulfate/molybdate ABC transporter, permease protein; AT 99.93
3dhw_A217 D-methionine transport system permease protein METI; AB 99.91
2r6g_F514 Maltose transport system permease protein MALF; ABC tra 99.91
2r6g_G296 Maltose transport system permease protein MALG; ABC tra 99.86
>2onk_C Molybdate/tungstate ABC transporter, permease protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: f.58.1.1 Back     alignment and structure
Probab=99.93  E-value=1.1e-24  Score=174.76  Aligned_cols=207  Identities=18%  Similarity=0.177  Sum_probs=167.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----
Q ss_conf             1202667899999999999999999999999998643730245678989988765336999999999999862666----
Q gi|254780705|r  200 VAGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSAVLINFFKMP----  275 (425)
Q Consensus       200 ~~Gi~~ai~gTl~~~~ia~~ia~pigv~~aiyl~e~a~~~~~~~~i~~~i~~la~vPSIv~Gl~gl~~~~~~~~~~----  275 (425)
                      ..+.+.++.+|+..+++++++++++|+..|+++.++  +.+.+++++..+.....+|++++++..+.++.+.....    
T Consensus        67 ~~~~~~~~~~Sl~~a~~s~~l~~~ig~~~a~~l~~~--~~~~~~~~~~l~~~p~~iP~~v~~~~~~~~~~~~~~~~~~~~  144 (284)
T 2onk_C           67 DPAVWKVVLTTYYAALISTLIAVIFGTPLAYILARK--SFPGKSVVEGIVDLPVVIPHTVAGIALLVVFGSSGLIGSFSP  144 (284)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC--CCSSHHHHHHHHHHHHHSCHHHHHHHHHHHHSTTSTTTTTCS
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             979999999999999999999999999999999982--644899999999978744514456666553312255676210


Q ss_pred             ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             ---30046897533454366899999999851106789899870772127777883975332589999999999876779
Q gi|254780705|r  276 ---RSTALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETA  352 (425)
Q Consensus       276 ---~~~~l~g~~~l~~m~lP~i~~~~~~al~~vp~~~~eaa~~LGas~~~~~~~v~lp~a~pgi~~g~il~~~ra~GEta  352 (425)
                         ..+.....++.....+|+++...+++++++|+++.|||..+|+++||++++|++|.++|+++++.+++++++++|++
T Consensus       145 ~~~~~~~~~iil~~~~~~~p~~~~~~~~~l~~i~~~l~eaA~~lGas~~~~~~~IilP~~~p~i~~~~il~f~~~~~~~~  224 (284)
T 2onk_C          145 LKFVDALPGIVVAMLFVSVPIYINQAKEGFASVDVRLEHVARTLGSSPLRVFFTVSLPLSVRHIVAGAIMSWARGISEFG  224 (284)
T ss_dssp             SCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEHEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             00321069999998861465022234355315885689999975989353011024999999999999999999999999


Q ss_pred             HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             999985432101366561344557999999860366500699999999999999999999999999974104
Q gi|254780705|r  353 PLLFVGMVAFVTDYPVGVTDIATAFPVQIYLWAADAERPFVERTFGAILLLLIFLAVINTAMLWLRNRFKKR  424 (425)
Q Consensus       353 ~ll~~~~~~~~~~~p~~~~~p~~tlp~~Iy~~~~~~~~~~~~~~~aa~lvLl~~~~~~n~~a~~lr~r~~~~  424 (425)
                      ...++++.             ..++|..+|....+.+.   +.+.+.+++++++.+.++.+..++++|-+.|
T Consensus       225 ~~~~l~~~-------------~~~~~~~i~~~~~~~~~---~~~~a~a~il~~i~l~~~~~~~~l~~r~~~~  280 (284)
T 2onk_C          225 AVVVIAYY-------------PMIAPTLIYERYLSEGL---SAAMPVAAILILLSLAVFVALRIIVGREDVS  280 (284)
T ss_dssp             HHHTTCCS-------------SCCHHHHHHHHHHHHCG---GGTHHHHHHHHHHHHHHHHHHHHTTC-----
T ss_pred             HHHHHHCC-------------CCHHHHHHHHHHHCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99988289-------------85299999999980589---9999999999999999999999999713774
>3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: f.58.1.1 Back     alignment and structure
>3dhw_A D-methionine transport system permease protein METI; ABC-transporter, methionine uptake transporter, membrane protein, amino-acid transport; 3.70A {Escherichia coli K12} SCOP: f.58.1.1 Back     alignment and structure
>2r6g_F Maltose transport system permease protein MALF; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} SCOP: e.70.1.1 f.58.1.1 PDB: 3fh6_F Back     alignment and structure
>2r6g_G Maltose transport system permease protein MALG; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} SCOP: f.58.1.1 PDB: 3fh6_G Back     alignment and structure

Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch

Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

IdentityAlignment graphLength Definition E-value
Target 425 phosphate ABC transporter, permease protein PstA [Candi
d3dhwa1203 f.58.1.1 (A:6-208) D-methionine transport system permea 7e-08
>d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease protein MetI {Escherichia coli [TaxId: 562]} Length = 203 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: MetI-like
superfamily: MetI-like
family: MetI-like
domain: D-methionine transport system permease protein MetI
species: Escherichia coli [TaxId: 562]

 Score = 52.4 bits (125), Expect = 7e-08
 Identities = 31/160 (19%), Positives = 61/160 (38%), Gaps = 2/160 (1%)

Query: 200 VAGIGVAVVGSLYMMLIVIGLSFPLGIASAIYL-EEFSHKGFFSSFVQANINNLASVPSI 258
           V G+   +  +         +  P+G+   +    +          V A +N   S+P I
Sbjct: 5   VRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFI 64

Query: 259 VYGILGSAVLINFFKMPRSTALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGA 318
           +  +                     + L +   P I      AL  +P+ +  A+  +GA
Sbjct: 65  ILLVWMIPFTRVIVGTSIG-LQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGA 123

Query: 319 SKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVG 358
           + +Q V   +LP A+P ++  +T++L   +G +A    VG
Sbjct: 124 TPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVG 163

Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

IdentityAlignment graphLength Definition Probability
Target425 phosphate ABC transporter, permease protein PstA [Candi
d3d31c1248 Sulfate/molybdate ABC transporter, permease protein {Me 99.92
d2r6gg1290 Maltose transport system permease protein MalG {Escheri 99.9
d2onkc1252 Molybdate/tungstate transport system permease protein W 99.9
d2r6gf2244 Maltose transport system permease protein MalF {Escheri 99.88
d3dhwa1203 D-methionine transport system permease protein MetI {Es 99.87
>d3d31c1 f.58.1.1 (C:13-260) Sulfate/molybdate ABC transporter, permease protein {Methanosarcina acetivorans [TaxId: 2214]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: MetI-like
superfamily: MetI-like
family: MetI-like
domain: Sulfate/molybdate ABC transporter, permease protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.92  E-value=1.1e-23  Score=166.71  Aligned_cols=194  Identities=21%  Similarity=0.217  Sum_probs=157.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------
Q ss_conf             20266789999999999999999999999999864373024567898998876533699999999999986266------
Q gi|254780705|r  201 AGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSAVLINFFKM------  274 (425)
Q Consensus       201 ~Gi~~ai~gTl~~~~ia~~ia~pigv~~aiyl~e~a~~~~~~~~i~~~i~~la~vPSIv~Gl~gl~~~~~~~~~------  274 (425)
                      ...+.++..|++.+.++.++++++|+..|++++++  +.+.++.++........+|++++|+..+..+.+....      
T Consensus        43 ~~~~~~l~~Sl~~a~~s~~i~~~lg~~~a~~~~~~--~~~~~~~~~~l~~~p~~ip~vv~~~~~~~~~~~~~~~~~~~~~  120 (248)
T d3d31c1          43 RSVISSIFLSLYAGFLATLLALLLGAPTGYILARF--DFPGKRLVESIIDVPVVVPHTVAGIALLTVFGSRGLIGEPLES  120 (248)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--CCTTHHHHHHHHHGGGTSCHHHHHHHHHHHHSTTSTTTGGGTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCC
T ss_conf             89999999999999999999999999999999864--6512568999999999999720002445203432111112222


Q ss_pred             ---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             ---63004689753345436689999999985110678989987077212777788397533258999999999987677
Q gi|254780705|r  275 ---PRSTALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGET  351 (425)
Q Consensus       275 ---~~~~~l~g~~~l~~m~lP~i~~~~~~al~~vp~~~~eaa~~LGas~~~~~~~v~lp~a~pgi~~g~il~~~ra~GEt  351 (425)
                         ...+.....++...+.+|++++..+++++++|++++|||..+|+|+||+++||++|.++|+++++.++++.++++|.
T Consensus       121 ~~~~~~~~~~iii~~~~~~~p~~~~~~~~~l~~i~~~~~eAA~~lGas~~~~~~~I~lP~~~p~i~~~~~l~f~~~~~~~  200 (248)
T d3d31c1         121 YIQFRDALPGIVVAMLFVSMPYLANSAREGFKSVDPRLENAARSLGAPLWKAFFFVTLPLSARYLLIGSVMTWARAISEF  200 (248)
T ss_dssp             TCCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCCEEEHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             11245642001001101100368888899997103368999876310423477898899999999999999999999999


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999985432101366561344557999999860366500699999999999999999999
Q gi|254780705|r  352 APLLFVGMVAFVTDYPVGVTDIATAFPVQIYLWAADAERPFVERTFGAILLLLIFLAVINT  412 (425)
Q Consensus       352 a~ll~~~~~~~~~~~p~~~~~p~~tlp~~Iy~~~~~~~~~~~~~~~aa~lvLl~~~~~~n~  412 (425)
                      .+..++|+.             ..+++..+|....+.+.+   .+.+.+++++++.+.+..
T Consensus       201 ~~~~~l~~~-------------~~~~~~~i~~~~~~~~~~---~a~a~a~il~~~~l~~~~  245 (248)
T d3d31c1         201 GAVVILAYY-------------PMVGPTLIYDRFISYGLS---ASRPIAVLLILVTLSIFL  245 (248)
T ss_dssp             HHHHHHHCT-------------TCCHHHHHHHHHHHSTTT---TTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCC-------------CCHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHHHHHH
T ss_conf             988733189-------------840999999999955899---999999999999999999
>d2r6gg1 f.58.1.1 (G:7-296) Maltose transport system permease protein MalG {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2onkc1 f.58.1.1 (C:1-252) Molybdate/tungstate transport system permease protein WtpB (ModB) {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2r6gf2 f.58.1.1 (F:261-504) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease protein MetI {Escherichia coli [TaxId: 562]} Back     information, alignment and structure

Homologous Domains in MMDB70 Database Detected by RPS-BLAST

Original result of RPS-BLAST against MMDB70 database

IdentityAlignment graphLength Definition E-value
Target 425 phosphate ABC transporter, permease protein PstA [
3dhw_A_217 (A:) D-methionine transport system permease protei 2e-13
3d31_C_295 (C:) Sulfate/molybdate ABC transporter, permease p 1e-09
2r6g_G_73-244172 (G:73-244) Maltose transport system permease prote 2e-13
2onk_C_69-249181 (C:69-249) Molybdate/tungstate ABC transporter, pe 6e-13
2r6g_F_269-326_360-453152 (F:269-326,F:360-453) Maltose transport system per 3e-10
>3dhw_A (A:) D-methionine transport system permease protein METI; ABC-transporter, methionine uptake transporter, membrane protein, amino-acid transport; 3.70A {Escherichia coli K12}Length = 217 Back     alignment and structure
 Score = 71.5 bits (175), Expect = 2e-13
 Identities = 38/226 (16%), Positives = 77/226 (34%), Gaps = 19/226 (8%)

Query: 200 VAGIGVAVVGSLYMMLIVIGLSFPLGIASAIYL-EEFSHKGFFSSFVQANINNLASVPSI 258
           V G+   +  +         +  P+G+   +    +          V A +N   S+P I
Sbjct: 10  VRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPFI 69

Query: 259 VYGILGSAVLINFFKMPRSTALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGA 318
           +  +                     + L +   P I      AL  +P+ +  A+  +GA
Sbjct: 70  ILLVWMIPFTRVIVGTS-IGLQAAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGA 128

Query: 319 SKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVGMVAFVTDYPVGVTDIATAFP 378
           + +Q V   +LP A+P ++  +T++L   +G +A    VG                    
Sbjct: 129 TPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAGGLGQ-------------- 174

Query: 379 VQIYLWAADAERPFVERTFGAILLLLIFLAVINTAMLWLRNRFKKR 424
              Y +        V      ++LL+I + +I  A   +     ++
Sbjct: 175 -IGYQYGYIGYNATV--MNTVLVLLVILVYLIQFAGDRIVRAVTRK 217
>3d31_C (C:) Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans}Length = 295 Back     alignment and structure
>2r6g_G (G:73-244) Maltose transport system permease protein MALG; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12}Length = 172 Back     alignment and structure
>2onk_C (C:69-249) Molybdate/tungstate ABC transporter, permease protein; membrane protein; 3.10A {Archaeoglobus fulgidus}Length = 181 Back     alignment and structure
>2r6g_F (F:269-326,F:360-453) Maltose transport system permease protein MALF; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12}Length = 152 Back     alignment and structure

Homologous Domains in MMDB70 Database Detected by HHsearch

Original result of HHsearch against MMDB70 database

IdentityAlignment graphLength Definition Probability
Target425 phosphate ABC transporter, permease protein PstA [Candi
3d31_C_295 Sulfate/molybdate ABC transporter, permease protei 99.94
3dhw_A_217 D-methionine transport system permease protein MET 99.91
2r6g_G_73-244172 Maltose transport system permease protein MALG; AB 99.9
2onk_C_69-249181 Molybdate/tungstate ABC transporter, permease prot 99.89
2r6g_F_269-326_360-453152 Maltose transport system permease protein MALF; AB 99.8
>3d31_C (C:) Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} Back     alignment and structure
Probab=99.94  E-value=2.7e-25  Score=179.57  Aligned_cols=208  Identities=20%  Similarity=0.194  Sum_probs=177.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----
Q ss_conf             0120266789999999999999999999999999864373024567898998876533699999999999986266----
Q gi|254780705|r  199 EVAGIGVAVVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSAVLINFFKM----  274 (425)
Q Consensus       199 e~~Gi~~ai~gTl~~~~ia~~ia~pigv~~aiyl~e~a~~~~~~~~i~~~i~~la~vPSIv~Gl~gl~~~~~~~~~----  274 (425)
                      ...+.+.++.+|++.++++++++.++|+++|++++++  +.+.++.++..+.....+|.++.++..+..+......    
T Consensus        76 ~~~~~~~~l~~Tl~~~~~~~~~~~~ig~~~a~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (295)
T 3d31_C           76 GNRSVISSIFLSLYAGFLATLLALLLGAPTGYILARF--DFPGKRLVESIIDVPVVVPHTVAGIALLTVFGSRGLIGEPL  153 (295)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--CCTTHHHHHHHHHGGGTSCHHHHHHHHHHHHSTTSTTTGGG
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf             5989999999999999999999999999999999963--66479999999999999999999999999997266324303


Q ss_pred             -----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             -----630046897533454366899999999851106789899870772127777883975332589999999999876
Q gi|254780705|r  275 -----PRSTALVGGLILALMTLPSIIIATGVALRTVPSSIRSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALG  349 (425)
Q Consensus       275 -----~~~~~l~g~~~l~~m~lP~i~~~~~~al~~vp~~~~eaa~~LGas~~~~~~~v~lp~a~pgi~~g~il~~~ra~G  349 (425)
                           ...+.....+++.++.+|+++...+++++++|++++|||..+|||+||++++|++|+++|++++|.++++..+++
T Consensus       154 ~~~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~l~~i~~~l~eAA~~~Gas~~~~f~~I~lP~~~p~i~~~~~l~~~~~~~  233 (295)
T 3d31_C          154 ESYIQFRDALPGIVVAMLFVSMPYLANSAREGFKSVDPRLENAARSLGAPLWKAFFFVTLPLSARYLLIGSVMTWARAIS  233 (295)
T ss_dssp             TTTCCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             32167123999999999999999999999999975050589999876998262127746996999999999999999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             779999985432101366561344557999999860366500699999999999999999999999999974104
Q gi|254780705|r  350 ETAPLLFVGMVAFVTDYPVGVTDIATAFPVQIYLWAADAERPFVERTFGAILLLLIFLAVINTAMLWLRNRFKKR  424 (425)
Q Consensus       350 Eta~ll~~~~~~~~~~~p~~~~~p~~tlp~~Iy~~~~~~~~~~~~~~~aa~lvLl~~~~~~n~~a~~lr~r~~~~  424 (425)
                      |+....++++.             ..++++.+|....+.+.+.   +++.+++++++++.++.+...+.+|.++|
T Consensus       234 ~~~~~~~l~~~-------------~~~~~~~i~~~~~~~~~~~---~~a~~~i~~~~~~~~~~~~~~~~~r~~~~  292 (295)
T 3d31_C          234 EFGAVVILAYY-------------PMVGPTLIYDRFISYGLSA---SRPIAVLLILVTLSIFLVIRTLSAGWSIY  292 (295)
T ss_dssp             CCHHHHHHHCT-------------TCCHHHHHHHHHHHSTTTT---THHHHHHHHHHHHHHHHHHC---------
T ss_pred             HHHHHHHHHCC-------------CCHHHHHHHHHHHHCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999589-------------7319999999999448999---99999999999999999999999760364
>3dhw_A (A:) D-methionine transport system permease protein METI; ABC-transporter, methionine uptake transporter, membrane protein, amino-acid transport; 3.70A {Escherichia coli K12} Back     alignment and structure
>2r6g_G (G:73-244) Maltose transport system permease protein MALG; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} Back     alignment and structure
>2onk_C (C:69-249) Molybdate/tungstate ABC transporter, permease protein; membrane protein; 3.10A {Archaeoglobus fulgidus} Back     alignment and structure
>2r6g_F (F:269-326,F:360-453) Maltose transport system permease protein MALF; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} Back     alignment and structure