255764486

255764486

ABC transporter, membrane spanning protein

GeneID in NCBI database:8209710Locus tag:CLIBASIA_02965
Protein GI in NCBI database:255764486Protein Accession:YP_003065119.2
Gene range:+(559867, 561348)Protein Length:493aa
Gene description:ABC transporter, membrane spanning protein
COG prediction:[P] ABC-type phosphate transport system, permease component
KEGG prediction:pstC; ABC transporter, membrane spanning protein; K02037 phosphate transport system permease protein
SEED prediction:Phosphate transport system permease protein PstC (TC 3.A.1.7.1)
Pathway involved in KEGG:ABC transporters [PATH:las02010]
Subsystem involved in SEED:High affinity phosphate transporter and control of PHO regulon;
Phosphate metabolism
sequencesequence profile

Prediction of Local Sequence Properties

SourceSummaryResult
scaler
NCBI Databasesequence
PSIPREDsecondary structure
SSPROsecondary structure
DISEMBLcoil and loop
DISEMBLflexible loop
SEGlow complexity
DISOPREDdisordered
DISEMBLmissing residues
DISPROdisordered
TMHMM9 TM-Helix
TOPPRED9 TM-Helix
HMMTOP9 TM-Helix
MEMSAT7 TM-Helix
MEMSAT_SVM9 TM-Helix
PHOBIUS11 TM-Helix
SignalP_HMMno
SignalP_NNno
COILScoiled coil
70% MSAconservation map
90% MSAconservation map
  
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490---
MLLLSGFSIIFLGLVSYFLGCLRARFLSKKNAIRLYSKESYYGVYVALYSIIPYIFIFLLWFLFSPYIIDFQVSNSFSHYLNSLAEGDRQFSYSILHKIVDSLSSLDPDTKFKIQKGDGDISDLLRYQNVISGYVPSPWIIEAAFYQEILSRKSRILMNVCMFLFSFLGCSYAILRIKPSFCARSAVEKFIVFLLRNSLLLSIVISFGIIISLFANTFKFFSIISATDFFFGIVWDPRFPALGSSNVMGQFGLIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGFFALSLVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVLAAGVAARLQFNPFESMTTITVKIMNQLTGDLDFSSPQTLVAFALGLTLFCITFFLNIYAMYIMKKYQRKYE
ccccccHHHHHHHHHHHHHHHHHHHHHccccHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHcccEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
cHHHHHHHHHHHHHHHHHHcHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccHHcccccHHHHHHHHHHHHHHHcccccccHHHHHHHcccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
MLLLSGFSIIFLGLVSYFLGCLRARFLSKKNAIRLYSKESYYGVYVALYSIIPYIFIFLLWFLfspyiidfqvsnsfSHYLNSLAEGDRQFSYSILHKIVDslssldpdtkfkiqkgdgdisDLLRYQNVIsgyvpspwiIEAAFYQEILSRKSRILMNVCMFLFSFLGCSYAIlrikpsfcARSAVEKFIVFLLRNSLLLSIVISFGIIISLFANTFKFFSIISatdfffgivwdprfpalgssnvmgqfglipLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGFFALSLVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYvsslsedvissiprslrdgslglgatrseTMKYvifpaafpgiAGAILMTASRTIGETMIVVLAAGVAarlqfnpfesMTTITVKIMNQltgdldfsspQTLVAFALGLTLFCITFFLNIYAMYIMKKYQRKYE
MLLLSGFSIIFLGLVSYFLGCLRARFLSKKNAIRLYSKESYYGVYVALYSIIPYIFIFLLWFLFSPYIIDFQVSNSFSHYLNSLAEGDRQFSYSILHKIVDslssldpdTKFKIQKGDGDISDLLRYQNVISGYVPSPWIIEAAFYQEILSRKSRILMNVCMFLFSFLGCSYAILRIKPSFCARSAVEKFIVFLLRNSLLLSIVISFGIIISLFANTFKFFSIISATDFFFGIVWDPRFPALGSSNVMGQFGLIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGFFALSLVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSiprslrdgslglGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVLAAGVAARLQFNPFESMTTITVKIMNQLTGDLDFSSPQTLVAFALGLTLFCITFFLNIYAMYIMKKYQRKYE
MLLLSGFSIIFLGLVSYFLGCLRARFLSKKNAIRLYSKESYYGVYVALYSIIPYIFIFLLWFLFSPYIIDFQVSNSFSHYLNSLAEGDRQFSYSILHKIVDSLSSLDPDTKFKIQKGDGDISDLLRYQNVISGYVPSPWIIEAAFYQEILSRKSRILMNVCMFLFSFLGCSYAILRIKPSFCARSAVEKFIVFLLRNSLLLSIVISFGIIISLFANTFKFFSIISATDFFFGIVWDPRFPALGSSNVMGQFGLIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGFFALSLVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVLAAGVAARLQFNPFESMTTITVKIMNQLTGDLDFSSPQTLVAFALGLTLFCITFFLNIYAMYIMKKYQRKYE
MLLLSGFSIIFLGLVSYFLGCLRA************SKESYYGVYVALYSIIPYIFIFLLWFLFSPYIIDFQVSNSFSH****LAEGDRQFSYSILHKIVDSLSSLDPDTKFKIQKGDGDISDLLRYQNVISGYVPSPWIIEAAFYQEILSRKSRILMNVCMFLFSFLGCSYAILRI*******SA*EKFIVFLLRNSLLLSIVISFGIIISLFANTFKFFSIISATDFFFGIVWDPRFPALGSSNVMGQFGLIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGFFALSLVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVLAAGVAARLQFNPFESMTTITVKIMNQLTGDLDFSSPQTLVAFALGLTLFCITFFLNIYAMYIMKKY*****
MLLLSGFSIIFLGLVSYFLGCLRARFLSKKNAIRLYSKESYYGVYVALYSIIPYIFIFLLWFLFSPYIIDFQVSNSFSHYLNSLAEGDRQFSYSILHKIVDSLSSLDPDTKFKIQKGDGDISDLLRYQNVISGYVPSPWIIEAAFYQEILSRKSRILMNVCMFLFSFLGCSYAILRIKPSFCARSAVEKFIVFLLRNSLLLSIVISFGIIISLFANTFKFFSIISATDFFFGIVWDPRFPALGSSNVMGQFGLIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGFFALSLVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVLAAGVAARLQFNPFESMTTITVKIMNQLTGDLDFSSPQTLVAFALGLTLFCITFFLNIYAMYIMKKYQRKYE
MLLLSGFSIIFLGLVSYFLGCLRARFLSKKNAIRLYSKESYYGVYVALYSIIPYIFIFLLWFLFSPYIIDFQVSNSFSHYLNSLAEGDRQFSYSILHKIVDSLSSLDPDTKFKIQKGDGDISDLLRYQNVISGYVPSPWIIEAAFYQEILSRKSRILMNVCMFLFSFLGCSYAILRIKPSFCARSAVEKFIVFLLRNSLLLSIVISFGIIISLFANTFKFFSIISATDFFFGIVWDPRFPALGSSNVMGQFGLIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGFFALSLVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVLAAGVAARLQFNPFESMTTITVKIMNQLTGDLDFSSPQTLVAFALGLTLFCITFFLNIYAMYIMKKYQRKYE
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MLLLSGFSIIFLGLVSYFLGCLRARFLSKKNAIRLYSKESYYGVYVALYSIIPYIFIFLLWFLFSPYIIDFQVSNSFSHYLNSLAEGDRQFSYSILHKIVDSLSSLDPDTKFKIQKGDGDISDLLRYQNVISGYVPSPWIIEAAFYQEILSRKSRILMNVCMFLFSFLGCSYAILRIKPSFCARSAVEKFIVFLLRNSLLLSIVISFGIIISLFANTFKFFSIISATDFFFGIVWDPRFPALGSSNVMGQFGLIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGFFALSLVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVLAAGVAARLQFNPFESMTTITVKIMNQLTGDLDFSSPQTLVAFALGLTLFCITFFLNIYAMYIMKKYQRKYE
MLLLSGFSIIFLGLVSYFLGCLRARFLSKKNAIRLYSKESYYGVYVALYSIIPYIFIFLLWFLFSPYIIDFQVSNSFSHYLNSLAEGDRQFSYSILHKIVDSLSSLDPDTKFKIQKGDGDISDLLRYQNVISGYVPSPWIIEAAFYQEILSRKSRILMNVCMFLFSFLGCSYAILRIKPSFCARSAVEKFIVFLLRNSLLLSIVISFGIIISLFANTFKFFSIISATDFFFGIVWDPRFPALGSSNVMGQFGLIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGFFALSLVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVLAAGVAARLQFNPFESMTTITVKIMNQLTGDLDFSSPQTLVAFALGLTLFCITFFLNIYAMYIMKKYQRKYE
MLLLSGFSIIFLGLVSYFLGCLRARFLSKKNAIRLYSKESYYGVYVALYSIIPYIFIFLLWFLFSPYIIDFQVSNSFSHYLNSLAEGDRQFSYSILHKIVDSLSSLDPDTKFKIQKGDGDISDLLRYQNVISGYVPSPWIIEAAFYQEILSRKSRILMNVCMFLFSFLGCSYAILRIKPSFCARSAVEKFIVFLLRNSLLLSIVISFGIIISLFANTFKFFSIISATDFFFGIVWDPRFPALGSSNVMGQFGLIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGFFALSLVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVLAAGVAARLQFNPFESMTTITVKIMNQLTGDLDFSSPQTLVAFALGLTLFCITFFLNIYAMYIMKKYQRKYE

Close Homologs Detected by BLAST or PSI-BLAST

Homolog within the Genome Detected by BLAST

IdentityAlignment graphLength Definition E-value
Target493 ABC transporter, membrane spanning protein [Candidatus
254780705425 phosphate ABC transporter, permease protein PstA [ 6e-13
254780341281 proline/glycine betaine ABC transporter, permease 0.005
>gi|254780705|ref|YP_003065118.1| phosphate ABC transporter, permease protein PstA [Candidatus Liberibacter asiaticus str. psy62] Length = 425 Back     alignment
 Score = 67.4 bits (163), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 86/172 (50%), Gaps = 18/172 (10%)

Query: 257 LIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKL-RAVIKPITEMLVGIPTIVYGFFALS 315
           ++G+ Y+  I +  S P+G+  AIY+ E++ K    + ++     L  +P+IVYG    +
Sbjct: 207 VVGSLYMMLIVIGLSFPLGIASAIYLEEFSHKGFFSSFVQANINNLASVPSIVYGILGSA 266

Query: 316 LVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPRSL 375
           ++  F +                 +   + L  GL++ +M +P +   +   + ++P S+
Sbjct: 267 VLINFFK-----------------MPRSTALVGGLILALMTLPSIIIATGVALRTVPSSI 309

Query: 376 RDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVLAAGVA 427
           R  +LGLGA++ +T+ + + P A P I     ++ +R +GET  ++    VA
Sbjct: 310 RSAALGLGASKVQTVFHHVLPLAMPAILTGSTVSLARALGETAPLLFVGMVA 361

>gi|254780341|ref|YP_003064754.1| proline/glycine betaine ABC transporter, permease protein [Candidatus Liberibacter asiaticus str. psy62] Length = 281 Back     alignment
 Score = 34.3 bits (77), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 67/159 (42%), Gaps = 32/159 (20%)

Query: 265 FIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGFFALSLVGPFLRDI 324
           FI+M   VP+G+L A Y       +  ++I+   + +  IPT VY   AL L G      
Sbjct: 105 FISMFIGVPLGVLAAWY------PRFYSIIRLFLDSMQTIPTFVYLIPALVLFG------ 152

Query: 325 SIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPRSLRDGSLGLGA 384
                G++ G   + + +              IP    L+   I S P  L++ +   GA
Sbjct: 153 ----LGMVPGIVATIVFS--------------IPTSVRLTRLGIISTPPILKEAACAFGA 194

Query: 385 TRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVLA 423
           T  +  + V  P A P I  +  +T +  +  +M+VV A
Sbjct: 195 TPFQVFRKVELPFAIPQIVAS--LTQTIMLSLSMVVVTA 231

Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations

IdentityAlignment graphLength Definition Round E-value
Target493 ABC transporter, membrane spanning protein [Candidatus
315121871491 ABC transporter, membrane spanning protein [Candidatus 1 0.0
159184302494 ABC transporter, membrane spanning protein [Agrobacteri 1 1e-148
116250315493 transmembrane component of ABC transporter [Rhizobium l 1 1e-145
241202933493 phosphate ABC transporter membrane protein [Rhizobium l 1 1e-144
209547778493 phosphate ABC transporter inner membrane subunit PstC [ 1 1e-144
327192731493 phosphate ABC transporter, permease protein [Rhizobium 1 1e-143
190890213493 phosphate ABC transporter permease [Rhizobium etli CIAT 1 1e-143
325291854494 phosphate ABC transporter transmembrane protein [Agroba 1 1e-143
222084780517 phosphate ABC transporter, permease protein PstC [Agrob 1 1e-142
86356164493 phosphate ABC transporter, permease protein [Rhizobium 1 1e-141
>gi|315121871|ref|YP_004062360.1| ABC transporter, membrane spanning protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 491 Back     alignment and organism information
 Score =  746 bits (1925), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/491 (77%), Positives = 431/491 (87%)

Query: 3   LLSGFSIIFLGLVSYFLGCLRARFLSKKNAIRLYSKESYYGVYVALYSIIPYIFIFLLWF 62
           +L G  +IFLGLVSYF GC+RARFLS ++  RLYSKESYYG+YVA Y++IP  F+FL+WF
Sbjct: 1   MLFGLYMIFLGLVSYFFGCMRARFLSNRDKARLYSKESYYGIYVAFYAVIPCAFVFLIWF 60

Query: 63  LFSPYIIDFQVSNSFSHYLNSLAEGDRQFSYSILHKIVDSLSSLDPDTKFKIQKGDGDIS 122
           LFS Y ID QV  +FS  +NSL EGDR FSY+++ KI +SL SLD D + KIQ+G+G+I 
Sbjct: 61  LFSSYFIDLQVRETFSPQINSLVEGDRDFSYNMVQKIAESLPSLDLDMREKIQRGEGNIL 120

Query: 123 DLLRYQNVISGYVPSPWIIEAAFYQEILSRKSRILMNVCMFLFSFLGCSYAILRIKPSFC 182
           DLLR Q +I    PSPWII+AAFY+  LS KSRI+MN+CM L + LG SYA  RIKP  C
Sbjct: 121 DLLRSQGIILARSPSPWIIKAAFYRLSLSFKSRIIMNLCMLLLAVLGFSYAFFRIKPHLC 180

Query: 183 ARSAVEKFIVFLLRNSLLLSIVISFGIIISLFANTFKFFSIISATDFFFGIVWDPRFPAL 242
           ARS VE+++VFLL+   LLSI+IS GIIISLF+++ KFF IIS  DFFFG VWDPRFP  
Sbjct: 181 ARSKVEQYLVFLLKVCSLLSIIISLGIIISLFSSSLKFFYIISPKDFFFGTVWDPRFPPP 240

Query: 243 GSSNVMGQFGLIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLV 302
           GSSNV+GQFG+IPLL+GTFYIG +AMLFSVPIGLLIA+YMAEYA K+LR++IKPITE+LV
Sbjct: 241 GSSNVVGQFGIIPLLVGTFYIGLVAMLFSVPIGLLIAMYMAEYASKRLRSIIKPITEILV 300

Query: 303 GIPTIVYGFFALSLVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSS 362
           GIPTIVYGFFALSL+GPFLRDIS+YMNGLITG+YKSFIEAQSVLTAGLVMGIMLIPYVSS
Sbjct: 301 GIPTIVYGFFALSLIGPFLRDISVYMNGLITGHYKSFIEAQSVLTAGLVMGIMLIPYVSS 360

Query: 363 LSEDVISSIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVL 422
           LSEDVIS++PR+LRDGSLGLGATRSETMKYV+FPAAFPGI GAILMTASRTIGETMIVVL
Sbjct: 361 LSEDVISAVPRALRDGSLGLGATRSETMKYVVFPAAFPGIVGAILMTASRTIGETMIVVL 420

Query: 423 AAGVAARLQFNPFESMTTITVKIMNQLTGDLDFSSPQTLVAFALGLTLFCITFFLNIYAM 482
           AAGVAARLQF+PFESMTTITVKIMNQLTGDLDFSSPQ LVAFALGLTLFCITFFLNI AM
Sbjct: 421 AAGVAARLQFSPFESMTTITVKIMNQLTGDLDFSSPQMLVAFALGLTLFCITFFLNICAM 480

Query: 483 YIMKKYQRKYE 493
           YIMKKYQRKYE
Sbjct: 481 YIMKKYQRKYE 491


Species: Candidatus Liberibacter solanacearum
Genus: Candidatus Liberibacter
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria
>gi|159184302|ref|NP_353450.2| ABC transporter, membrane spanning protein [Agrobacterium tumefaciens str. C58] Length = 494 Back     alignment and organism information
>gi|116250315|ref|YP_766153.1| transmembrane component of ABC transporter [Rhizobium leguminosarum bv. viciae 3841] Length = 493 Back     alignment and organism information
>gi|241202933|ref|YP_002974029.1| phosphate ABC transporter membrane protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 493 Back     alignment and organism information
>gi|209547778|ref|YP_002279695.1| phosphate ABC transporter inner membrane subunit PstC [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 493 Back     alignment and organism information
>gi|327192731|gb|EGE59667.1| phosphate ABC transporter, permease protein [Rhizobium etli CNPAF512] Length = 493 Back     alignment and organism information
>gi|190890213|ref|YP_001976755.1| phosphate ABC transporter permease [Rhizobium etli CIAT 652] Length = 493 Back     alignment and organism information
>gi|325291854|ref|YP_004277718.1| phosphate ABC transporter transmembrane protein [Agrobacterium sp. H13-3] Length = 494 Back     alignment and organism information
>gi|222084780|ref|YP_002543309.1| phosphate ABC transporter, permease protein PstC [Agrobacterium radiobacter K84] Length = 517 Back     alignment and organism information
>gi|86356164|ref|YP_468056.1| phosphate ABC transporter, permease protein [Rhizobium etli CFN 42] Length = 493 Back     alignment and organism information

Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch

Conserved Domains in CDD Database Detected by RPS-BLAST

IdentityAlignment graphLength Definition E-value
Target493 ABC transporter, membrane spanning protein [Candidatus
TIGR02138295 TIGR02138, phosphate_pstC, phosphate ABC transporter, p 3e-69
TIGR00974271 TIGR00974, 3a0107s02c, phosphate ABC transporter, perme 3e-33
COG0581292 COG0581, PstA, ABC-type phosphate transport system, per 6e-33
PRK11275319 PRK11275, pstC, phosphate transporter permease subunit 6e-21
COG0555274 COG0555, CysU, ABC-type sulfate transport system, perme 4e-10
COG1178 540 COG1178, ThiP, ABC-type Fe3+ transport system, permease 6e-08
COG1176287 COG1176, PotB, ABC-type spermidine/putrescine transport 4e-06
COG0573310 COG0573, PstC, ABC-type phosphate transport system, per 1e-63
COG4590733 COG4590, COG4590, ABC-type uncharacterized transport sy 3e-28
TIGR02141208 TIGR02141, modB_ABC, molybdate ABC transporter, permeas 3e-09
COG1178540 COG1178, ThiP, ABC-type Fe3+ transport system, permease 3e-07
TIGR02139265 TIGR02139, permease_CysT, sulfate ABC transporter, perm 2e-06
COG1175295 COG1175, UgpA, ABC-type sugar transport systems, permea 0.004
pfam12501127 pfam12501, DUF3708, Phosphate ATP-binding cassette tran 2e-17
cd06261190 cd06261, TM_PBP2, Transmembrane subunit (TM) found in P 2e-12
PRK11268295 PRK11268, pstA, phosphate transporter permease subunit 8e-10
COG4149225 COG4149, ModC, ABC-type molybdate transport system, per 2e-09
COG2011222 COG2011, AbcD, ABC-type metal ion transport system, per 6e-06
COG0765222 COG0765, HisM, ABC-type amino acid transport system, pe 8e-06
pfam00528183 pfam00528, BPD_transp_1, Binding-protein-dependent tran 1e-05
CHL00187237 CHL00187, cysT, sulfate transport protein; Provisional 2e-05
TIGR00969271 TIGR00969, 3a0106s02, sulfate ABC transporter, permease 3e-04
TIGR03416267 TIGR03416, ABC_choXWV_perm, choline ABC transporter, pe 5e-04
TIGR01581225 TIGR01581, Mo_ABC_porter, NifC-like ABC-type porter 0.001
PRK10782217 PRK10782, PRK10782, DL-methionine transporter permease 0.004
COG4590733 COG4590, COG4590, ABC-type uncharacterized transport sy 2e-11
COG1177267 COG1177, PotC, ABC-type spermidine/putrescine transport 7e-09
COG4176290 COG4176, ProW, ABC-type proline/glycine betaine transpo 8e-04
>gnl|CDD|162724 TIGR02138, phosphate_pstC, phosphate ABC transporter, permease protein PstC Back     alignment and domain information
>gnl|CDD|162141 TIGR00974, 3a0107s02c, phosphate ABC transporter, permease protein PstA Back     alignment and domain information
>gnl|CDD|30926 COG0581, PstA, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|183070 PRK11275, pstC, phosphate transporter permease subunit PstC; Provisional Back     alignment and domain information
>gnl|CDD|30901 COG0555, CysU, ABC-type sulfate transport system, permease component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|31371 COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|31369 COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|30918 COG0573, PstC, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|34228 COG4590, COG4590, ABC-type uncharacterized transport system, permease component [General function prediction only] Back     alignment and domain information
>gnl|CDD|162726 TIGR02141, modB_ABC, molybdate ABC transporter, permease protein Back     alignment and domain information
>gnl|CDD|31371 COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|131194 TIGR02139, permease_CysT, sulfate ABC transporter, permease protein CysT Back     alignment and domain information
>gnl|CDD|31368 COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|152935 pfam12501, DUF3708, Phosphate ATP-binding cassette transporter Back     alignment and domain information
>gnl|CDD|119394 cd06261, TM_PBP2, Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs Back     alignment and domain information
>gnl|CDD|183065 PRK11268, pstA, phosphate transporter permease subunit PtsA; Provisional Back     alignment and domain information
>gnl|CDD|33901 COG4149, ModC, ABC-type molybdate transport system, permease component [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|32194 COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|31108 COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|144205 pfam00528, BPD_transp_1, Binding-protein-dependent transport system inner membrane component Back     alignment and domain information
>gnl|CDD|164564 CHL00187, cysT, sulfate transport protein; Provisional Back     alignment and domain information
>gnl|CDD|162139 TIGR00969, 3a0106s02, sulfate ABC transporter, permease protein Back     alignment and domain information
>gnl|CDD|132457 TIGR03416, ABC_choXWV_perm, choline ABC transporter, permease protein Back     alignment and domain information
>gnl|CDD|130643 TIGR01581, Mo_ABC_porter, NifC-like ABC-type porter Back     alignment and domain information
>gnl|CDD|182726 PRK10782, PRK10782, DL-methionine transporter permease subunit; Provisional Back     alignment and domain information
>gnl|CDD|34228 COG4590, COG4590, ABC-type uncharacterized transport system, permease component [General function prediction only] Back     alignment and domain information
>gnl|CDD|31370 COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|33916 COG4176, ProW, ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism] Back     alignment and domain information

Conserved Domains in CDD Database Detected by HHsearch

IdentityAlignment graphLength Definition Probability
Target 493 ABC transporter, membrane spanning protein [Candidatus
TIGR02138317 phosphate_pstC phosphate ABC transporter, permease prot 100.0
COG0573310 PstC ABC-type phosphate transport system, permease comp 100.0
PRK11275319 pstC phosphate transporter permease subunit; Provisiona 100.0
PRK11268292 pstA phosphate transporter permease subunit; Provisiona 100.0
TIGR00974302 3a0107s02c phosphate ABC transporter, permease protein 100.0
COG0581292 PstA ABC-type phosphate transport system, permease comp 100.0
TIGR03226312 PhnU 2-aminoethylphosphonate ABC transporter, permease 99.92
TIGR02139265 permease_CysT sulfate ABC transporter, permease protein 99.9
TIGR00969280 3a0106s02 sulfate ABC transporter, permease protein; In 99.88
PRK10998296 malG maltose transporter permease; Provisional 99.68
COG4209309 LplB ABC-type polysaccharide transport system, permease 99.66
PRK10973281 glycerol-3-phosphate transporter membrane protein; Prov 99.64
TIGR02790258 nickel_nikC nickel ABC transporter, permease subunit Ni 98.66
COG4135551 ABC-type uncharacterized transport system, permease com 97.81
COG4590733 ABC-type uncharacterized transport system, permease com 100.0
PRK09421229 modB molybdate ABC transporter permease protein; Review 99.97
COG4149225 ModC ABC-type molybdate transport system, permease comp 99.95
PRK10971277 sulfate/thiosulfate transporter subunit; Provisional 99.95
COG0555274 CysU ABC-type sulfate transport system, permease compon 99.95
TIGR01581226 Mo_ABC_porter NifC-like ABC-type porter; InterPro: IPR0 99.94
PRK10592281 putrescine transporter subunit: membrane component of A 99.94
PRK10782217 DL-methionine transporter permease subunit; Provisional 99.94
COG1177267 PotC ABC-type spermidine/putrescine transport system, p 99.93
TIGR03255272 PhnV 2-aminoethylphosphonate ABC transport system, memb 99.93
PRK11602291 cysW sulfate/thiosulfate transporter permease subunit; 99.93
TIGR03262546 PhnU2 putative 2-aminoethylphosphonate ABC transport sy 99.93
PRK09433536 thiP thiamine transporter membrane protein; Reviewed 99.93
PRK09500257 potC spermidine/putrescine ABC transporter membrane pro 99.92
COG1178540 ThiP ABC-type Fe3+ transport system, permease component 99.92
PRK09497285 potB spermidine/putrescine ABC transporter membrane pro 99.91
PRK10683317 putrescine transporter subunit: membrane component of A 99.9
TIGR03262 546 PhnU2 putative 2-aminoethylphosphonate ABC transport sy 99.89
COG1178 540 ThiP ABC-type Fe3+ transport system, permease component 99.88
PRK09433 536 thiP thiamine transporter membrane protein; Reviewed 99.84
COG1176287 PotB ABC-type spermidine/putrescine transport system, p 99.83
COG4662227 TupA ABC-type tungstate transport system, periplasmic c 99.82
TIGR02140275 permease_CysW sulfate ABC transporter, permease protein 99.8
PRK10561280 glycerol-3-phosphate transporter permease; Provisional 99.79
COG1175295 UgpA ABC-type sugar transport systems, permease compone 99.78
PRK10952354 glycine betaine transporter membrane protein; Provision 99.74
PRK10160275 taurine transporter subunit; Provisional 99.73
COG2011222 AbcD ABC-type metal ion transport system, permease comp 99.72
PRK11123238 arginine transporter permease subunit ArtQ; Provisional 99.7
PRK11365263 ssuC alkanesulfonate transporter permease subunit; Prov 99.69
PRK09494219 glnP glutamine ABC transporter permease protein; Review 99.68
PRK11122222 artM arginine transporter permease subunit ArtM; Provis 99.62
COG0765222 HisM ABC-type amino acid transport system, permease com 99.62
COG4208287 CysW ABC-type sulfate transport system, permease compon 99.61
COG0395281 UgpE ABC-type sugar transport system, permease componen 99.6
PRK10999520 malF maltose transporter membrane protein; Provisional 99.54
COG3639283 ABC-type phosphate/phosphonate transport system, permea 99.52
PRK09881296 ATP-dependent peptide transporter membrane subunit; Pro 99.5
COG0600258 TauC ABC-type nitrate/sulfonate/bicarbonate transport s 99.5
COG4132282 ABC-type uncharacterized transport system, permease com 99.46
PRK10913300 dipeptide transporter; Provisional 99.44
COG3833282 MalG ABC-type maltose transport systems, permease compo 99.34
COG4215230 ArtQ ABC-type arginine transport system, permease compo 99.28
PRK09471306 oppB oligopeptide transporter permease; Reviewed 99.08
COG0601317 DppB ABC-type dipeptide/oligopeptide/nickel transport s 99.08
PRK10914339 dipeptide transporter permease DppB; Provisional 99.07
PRK10352314 nickel transporter permease NikB; Provisional 99.04
TIGR03003218 ectoine_ehuD ectoine/hydroxyectoine ABC transporter, pe 98.97
COG4171296 SapC ABC-type antimicrobial peptide transport system, p 98.23
COG4239341 ABC-type uncharacterized transport system, permease com 97.7
TIGR01253519 thiP thiamine/thiamine pyrophosphate ABC transporter, p 97.44
TIGR02789315 nickel_nikB nickel ABC transporter, permease subunit Ni 97.34
pfam12501127 DUF3708 Phosphate ATP-binding cassette transporter. Thi 99.97
TIGR02141212 modB_ABC molybdate ABC transporter, permease protein; I 99.95
pfam00528183 BPD_transp_1 Binding-protein-dependent transport system 99.69
PRK10417272 nikC nickel transporter permease NikC; Provisional 99.48
COG1173289 DppC ABC-type dipeptide/oligopeptide/nickel transport s 99.4
TIGR03004216 ectoine_ehuC ectoine/hydroxyectoine ABC transporter, pe 99.03
TIGR01097192 3A0109s02M phosphonate ABC transporter, permease protei 98.8
CHL00187235 cysT sulfate transport protein; Provisional 99.93
cd06261190 TM_PBP2 Transmembrane subunit (TM) found in Periplasmic 99.88
TIGR01183203 ntrB nitrate ABC transporter, permease protein; InterPr 97.59
TIGR03416267 ABC_choXWV_perm choline ABC transporter, permease prote 99.77
COG4176290 ProW ABC-type proline/glycine betaine transport system, 99.61
COG1174221 OpuBB ABC-type proline/glycine betaine transport system 99.55
COG4160228 ArtM ABC-type arginine/histidine transport system, perm 98.59
COG4986523 ABC-type anion transport system, duplicated permease co 98.57
COG4986523 ABC-type anion transport system, duplicated permease co 98.24
COG4597397 BatB ABC-type amino acid transport system, permease com 98.05
TIGR0172699 HEQRo_perm_3TM amino acid ABC transporter, permease pro 92.48
>TIGR02138 phosphate_pstC phosphate ABC transporter, permease protein PstC; InterPro: IPR011864 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems Back     alignment and domain information
>COG0573 PstC ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK11275 pstC phosphate transporter permease subunit; Provisional Back     alignment and domain information
>PRK11268 pstA phosphate transporter permease subunit; Provisional Back     alignment and domain information
>TIGR00974 3a0107s02c phosphate ABC transporter, permease protein PstA; InterPro: IPR005672 Bacterial binding protein-dependent transport systems , are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system Back     alignment and domain information
>COG0581 PstA ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR03226 PhnU 2-aminoethylphosphonate ABC transporter, permease protein Back     alignment and domain information
>TIGR02139 permease_CysT sulfate ABC transporter, permease protein CysT; InterPro: IPR011865 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems Back     alignment and domain information
>TIGR00969 3a0106s02 sulfate ABC transporter, permease protein; InterPro: IPR005667 Bacterial binding protein-dependent transport systems , are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system Back     alignment and domain information
>PRK10998 malG maltose transporter permease; Provisional Back     alignment and domain information
>COG4209 LplB ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK10973 glycerol-3-phosphate transporter membrane protein; Provisional Back     alignment and domain information
>TIGR02790 nickel_nikC nickel ABC transporter, permease subunit NikC; InterPro: IPR014157 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems Back     alignment and domain information
>COG4135 ABC-type uncharacterized transport system, permease component [General function prediction only] Back     alignment and domain information
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] Back     alignment and domain information
>PRK09421 modB molybdate ABC transporter permease protein; Reviewed Back     alignment and domain information
>COG4149 ModC ABC-type molybdate transport system, permease component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10971 sulfate/thiosulfate transporter subunit; Provisional Back     alignment and domain information
>COG0555 CysU ABC-type sulfate transport system, permease component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR01581 Mo_ABC_porter NifC-like ABC-type porter; InterPro: IPR006469 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems Back     alignment and domain information
>PRK10592 putrescine transporter subunit: membrane component of ABC superfamily; Provisional Back     alignment and domain information
>PRK10782 DL-methionine transporter permease subunit; Provisional Back     alignment and domain information
>COG1177 PotC ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03255 PhnV 2-aminoethylphosphonate ABC transport system, membrane component PhnV Back     alignment and domain information
>PRK11602 cysW sulfate/thiosulfate transporter permease subunit; Provisional Back     alignment and domain information
>TIGR03262 PhnU2 putative 2-aminoethylphosphonate ABC transport system, permease protein Back     alignment and domain information
>PRK09433 thiP thiamine transporter membrane protein; Reviewed Back     alignment and domain information
>PRK09500 potC spermidine/putrescine ABC transporter membrane protein; Reviewed Back     alignment and domain information
>COG1178 ThiP ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK09497 potB spermidine/putrescine ABC transporter membrane protein; Reviewed Back     alignment and domain information
>PRK10683 putrescine transporter subunit: membrane component of ABC superfamily; Provisional Back     alignment and domain information
>TIGR03262 PhnU2 putative 2-aminoethylphosphonate ABC transport system, permease protein Back     alignment and domain information
>COG1178 ThiP ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK09433 thiP thiamine transporter membrane protein; Reviewed Back     alignment and domain information
>COG1176 PotB ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism] Back     alignment and domain information
>COG4662 TupA ABC-type tungstate transport system, periplasmic component [Coenzyme metabolism] Back     alignment and domain information
>TIGR02140 permease_CysW sulfate ABC transporter, permease protein CysW; InterPro: IPR011866 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems Back     alignment and domain information
>PRK10561 glycerol-3-phosphate transporter permease; Provisional Back     alignment and domain information
>COG1175 UgpA ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK10952 glycine betaine transporter membrane protein; Provisional Back     alignment and domain information
>PRK10160 taurine transporter subunit; Provisional Back     alignment and domain information
>COG2011 AbcD ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK11123 arginine transporter permease subunit ArtQ; Provisional Back     alignment and domain information
>PRK11365 ssuC alkanesulfonate transporter permease subunit; Provisional Back     alignment and domain information
>PRK09494 glnP glutamine ABC transporter permease protein; Reviewed Back     alignment and domain information
>PRK11122 artM arginine transporter permease subunit ArtM; Provisional Back     alignment and domain information
>COG0765 HisM ABC-type amino acid transport system, permease component [Amino acid transport and metabolism] Back     alignment and domain information
>COG4208 CysW ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG0395 UgpE ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK10999 malF maltose transporter membrane protein; Provisional Back     alignment and domain information
>COG3639 ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK09881 ATP-dependent peptide transporter membrane subunit; Provisional Back     alignment and domain information
>COG0600 TauC ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG4132 ABC-type uncharacterized transport system, permease component [General function prediction only] Back     alignment and domain information
>PRK10913 dipeptide transporter; Provisional Back     alignment and domain information
>COG3833 MalG ABC-type maltose transport systems, permease component [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG4215 ArtQ ABC-type arginine transport system, permease component [Amino acid transport and metabolism] Back     alignment and domain information
>PRK09471 oppB oligopeptide transporter permease; Reviewed Back     alignment and domain information
>COG0601 DppB ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10914 dipeptide transporter permease DppB; Provisional Back     alignment and domain information
>PRK10352 nickel transporter permease NikB; Provisional Back     alignment and domain information
>TIGR03003 ectoine_ehuD ectoine/hydroxyectoine ABC transporter, permease protein EhuD; InterPro: IPR014341 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems Back     alignment and domain information
>COG4171 SapC ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms] Back     alignment and domain information
>COG4239 ABC-type uncharacterized transport system, permease component [General function prediction only] Back     alignment and domain information
>TIGR01253 thiP thiamine/thiamine pyrophosphate ABC transporter, permease protein; InterPro: IPR005947 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems Back     alignment and domain information
>TIGR02789 nickel_nikB nickel ABC transporter, permease subunit NikB; InterPro: IPR014156 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems Back     alignment and domain information
>pfam12501 DUF3708 Phosphate ATP-binding cassette transporter Back     alignment and domain information
>TIGR02141 modB_ABC molybdate ABC transporter, permease protein; InterPro: IPR011867 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems Back     alignment and domain information
>pfam00528 BPD_transp_1 Binding-protein-dependent transport system inner membrane component Back     alignment and domain information
>PRK10417 nikC nickel transporter permease NikC; Provisional Back     alignment and domain information
>COG1173 DppC ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR03004 ectoine_ehuC ectoine/hydroxyectoine ABC transporter, permease protein EhuC; InterPro: IPR014342 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems Back     alignment and domain information
>TIGR01097 3A0109s02M phosphonate ABC transporter, permease protein; InterPro: IPR005769 Bacterial binding protein-dependent transport systems , are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system Back     alignment and domain information
>CHL00187 cysT sulfate transport protein; Provisional Back     alignment and domain information
>cd06261 TM_PBP2 Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs Back     alignment and domain information
>TIGR01183 ntrB nitrate ABC transporter, permease protein; InterPro: IPR005889 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems Back     alignment and domain information
>TIGR03416 ABC_choXWV_perm choline ABC transporter, permease protein Back     alignment and domain information
>COG4176 ProW ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism] Back     alignment and domain information
>COG1174 OpuBB ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism] Back     alignment and domain information
>COG4160 ArtM ABC-type arginine/histidine transport system, permease component [Amino acid transport and metabolism] Back     alignment and domain information
>COG4986 ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG4986 ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG4597 BatB ABC-type amino acid transport system, permease component [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR01726 HEQRo_perm_3TM amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; InterPro: IPR010065 This entry represents one of several classes of multiple membrane spanning regions found in the inner membrane component of binding-protein-dependent transport systems Back     alignment and domain information

Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch

Homologous Structures Detected by PSI-BLAST against Nonredundant Database

IdentityAlignment graphLength Definition E-value
Target493 ABC transporter, membrane spanning protein [Candidatus
2onk_C284 Abc Transporter Modbc In Complex With Its Binding P 1e-04
3d31_C295 Modbc From Methanosarcina Acetivorans Length = 295 4e-04
>gi|134105247|pdb|2ONK|C Chain C, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 284 Back     alignment and structure
 Score = 52.8 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/251 (15%), Positives = 88/251 (35%), Gaps = 28/251 (11%)

Query: 237 PRFPALGSSNVMGQFGLIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKP 296
             F             +  +++ T+Y   I+ L +V  G  +A  +A       ++V++ 
Sbjct: 54  QLFNFDEFLKAASDPAVWKVVLTTYYAALISTLIAVIFGTPLAYILAR-KSFPGKSVVEG 112

Query: 297 ITEMLVGIPTIVYGFFALSLVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIML 356
           I ++ V IP  V G   L + G          +  + G++       ++    + M  + 
Sbjct: 113 IVDLPVVIPHTVAGIALLVVFG----------SSGLIGSFSPLKFVDALPGIVVAMLFVS 162

Query: 357 IPYVSSLSEDVISSIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGE 416
           +P   + +++  +S+   L   +  LG++       V  P +   I    +M+ +R I E
Sbjct: 163 VPIYINQAKEGFASVDVRLEHVARTLGSSPLRVFFTVSLPLSVRHIVAGAIMSWARGISE 222

Query: 417 TMIVVLAAGVAARLQFNPFESMTTITVKIMNQLTGDLDFSSPQTLVAFALGLTLFCITFF 476
              VV+ A          +E                  + S     A  +   L  ++  
Sbjct: 223 FGAVVVIAYYPMIAPTLIYE-----------------RYLSEGLSAAMPVAAILILLSLA 265

Query: 477 LNIYAMYIMKK 487
           + +    I+ +
Sbjct: 266 VFVALRIIVGR 276


>gi|190016397|pdb|3D31|C Chain C, Modbc From Methanosarcina Acetivorans Length = 295 Back     alignment and structure

Homologous Structures in PDB70 Database Detected by RPS-BLAST

IdentityAlignment graphLength Definition E-value
Target493 ABC transporter, membrane spanning protein [Candidatus
3d31_C295 Sulfate/molybdate ABC transporter, permease protein; AT 1e-12
2r6g_F514 Maltose transport system permease protein MALF; ABC tra 1e-08
3dhw_A217 D-methionine transport system permease protein METI; AB 2e-06
>3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: f.58.1.1 Length = 295 Back     alignment and structure
 Score = 70.0 bits (171), Expect = 1e-12
 Identities = 48/296 (16%), Positives = 106/296 (35%), Gaps = 35/296 (11%)

Query: 195 LRNSLLLSIVISFGIIISLFANTFKFFSIISATDFFFGIVWDPRFPALGSSNVMGQFGLI 254
            R    L+ V SF +++      F F ++ +         +     A G+ +V+    L 
Sbjct: 31  TRKFEPLTFVFSFLLLVLFL---FIFLTLSNMIFEQITEDFSGLVKAAGNRSVISSIFL- 86

Query: 255 PLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGFFAL 314
                + Y GF+A L ++ +G      +A +     + +++ I ++ V +P  V G   L
Sbjct: 87  -----SLYAGFLATLLALLLGAPTGYILARF-DFPGKRLVESIIDVPVVVPHTVAGIALL 140

Query: 315 SLVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPRS 374
           ++ G            +            ++    + M  + +PY+++ + +   S+   
Sbjct: 141 TVFGS--------RGLIGEPLESYIQFRDALPGIVVAMLFVSMPYLANSAREGFKSVDPR 192

Query: 375 LRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVLAAGVAARLQFNP 434
           L + +  LGA   +   +V  P +   +    +MT +R I E   VV+ A          
Sbjct: 193 LENAARSLGAPLWKAFFFVTLPLSARYLLIGSVMTWARAISEFGAVVILAY--------- 243

Query: 435 FESMTTITVKIMNQLTGDLDFSSPQTLVAFALGLTLFCITFFLNIYAMYIMKKYQR 490
                     I ++      F S     +  + + L  +T  + +    +   +  
Sbjct: 244 --YPMVGPTLIYDR------FISYGLSASRPIAVLLILVTLSIFLVIRTLSAGWSI 291


>2r6g_F Maltose transport system permease protein MALF; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} SCOP: e.70.1.1 f.58.1.1 PDB: 3fh6_F Length = 514 Back     alignment and structure
>3dhw_A D-methionine transport system permease protein METI; ABC-transporter, methionine uptake transporter, membrane protein, amino-acid transport; 3.70A {Escherichia coli K12} SCOP: f.58.1.1 Length = 217 Back     alignment and structure

Homologous Structures in PDB70 Database Detected by HHsearch

IdentityAlignment graphLength Definition Probability
Target493 ABC transporter, membrane spanning protein [Candidatus
2onk_C284 Molybdate/tungstate ABC transporter, permease protein; 99.94
3d31_C295 Sulfate/molybdate ABC transporter, permease protein; AT 99.94
2r6g_F514 Maltose transport system permease protein MALF; ABC tra 99.88
3dhw_A217 D-methionine transport system permease protein METI; AB 99.85
2r6g_G296 Maltose transport system permease protein MALG; ABC tra 99.82
>2onk_C Molybdate/tungstate ABC transporter, permease protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: f.58.1.1 Back     alignment and structure
Probab=99.94  E-value=7.5e-25  Score=175.25  Aligned_cols=213  Identities=18%  Similarity=0.211  Sum_probs=171.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             74999999999999999999999999999998633055789999999998754489999999999999987532210013
Q gi|255764486|r  252 GLIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGFFALSLVGPFLRDISIYMNGL  331 (493)
Q Consensus       252 Gi~p~i~GTl~i~~iA~lia~Pigl~~Aiyl~eya~~~~~~~~~~~iellagiPSVVyG~f~~~~l~p~~~~~~~~~~~~  331 (493)
                      +.++.+.+|+.++++++++++++|+..|..++++ +.|.|++++.+..++-.+|++++++.-.....|...     .   
T Consensus        69 ~~~~~~~~Sl~~a~~s~~l~~~ig~~~a~~l~~~-~~~~~~~~~~l~~~p~~iP~~v~~~~~~~~~~~~~~-----~---  139 (284)
T 2onk_C           69 AVWKVVLTTYYAALISTLIAVIFGTPLAYILARK-SFPGKSVVEGIVDLPVVIPHTVAGIALLVVFGSSGL-----I---  139 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC-CCSSHHHHHHHHHHHHHSCHHHHHHHHHHHHSTTST-----T---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC-----C---
T ss_conf             9999999999999999999999999999999982-644899999999978744514456666553312255-----6---


Q ss_pred             HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             23421035575301799999999887768999999986212999988766088568999999998303369999999999
Q gi|255764486|r  332 ITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTAS  411 (493)
Q Consensus       332 ~~~~~~~~~~~~s~l~a~l~l~imilP~i~~~~~~al~~vp~~lreaa~aLGat~~~ti~~vvlP~a~~gI~~~~iL~~~  411 (493)
                        ..........+.....+++....+|++....+++++++|++++|+|..+|+++||+++||++|.++|+|+++.++++.
T Consensus       140 --~~~~~~~~~~~~~~iil~~~~~~~p~~~~~~~~~l~~i~~~l~eaA~~lGas~~~~~~~IilP~~~p~i~~~~il~f~  217 (284)
T 2onk_C          140 --GSFSPLKFVDALPGIVVAMLFVSVPIYINQAKEGFASVDVRLEHVARTLGSSPLRVFFTVSLPLSVRHIVAGAIMSWA  217 (284)
T ss_dssp             --TTTCSSCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCCHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred             --CCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEHEEEHHHHHHHHHHHHHHHHH
T ss_conf             --762100032106999999886146502223435531588568999997598935301102499999999999999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99875999999941222578670467112799999985022345754589999999999999999999999999997542
Q gi|255764486|r  412 RTIGETMIVVLAAGVAARLQFNPFESMTTITVKIMNQLTGDLDFSSPQTLVAFALGLTLFCITFFLNIYAMYIMKKYQRK  491 (493)
Q Consensus       412 RaiGETm~v~m~~G~~~~~~~~~~~~~~tlt~~I~~~~~g~~~~~~~~~~~~fa~gl~L~~~tl~~N~~a~~i~~r~r~~  491 (493)
                      ++++|..++.+..|+           ..+++..++.... +.+     +..+.+.+.++++++++++.+..++.+|.|.|
T Consensus       218 ~~~~~~~~~~~l~~~-----------~~~~~~~i~~~~~-~~~-----~~~~~a~a~il~~i~l~~~~~~~~l~~r~~~~  280 (284)
T 2onk_C          218 RGISEFGAVVVIAYY-----------PMIAPTLIYERYL-SEG-----LSAAMPVAAILILLSLAVFVALRIIVGREDVS  280 (284)
T ss_dssp             HHHHCCHHHHTTCCS-----------SCCHHHHHHHHHH-HHC-----GGGTHHHHHHHHHHHHHHHHHHHHTTC-----
T ss_pred             HHHHHHHHHHHHHCC-----------CCHHHHHHHHHHH-CCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999988289-----------8529999999998-058-----99999999999999999999999999713774


Q ss_pred             C
Q ss_conf             2
Q gi|255764486|r  492 Y  492 (493)
Q Consensus       492 y  492 (493)
                      .
T Consensus       281 ~  281 (284)
T 2onk_C          281 E  281 (284)
T ss_dssp             -
T ss_pred             C
T ss_conf             3



>3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: f.58.1.1 Back     alignment and structure
>2r6g_F Maltose transport system permease protein MALF; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} SCOP: e.70.1.1 f.58.1.1 PDB: 3fh6_F Back     alignment and structure
>3dhw_A D-methionine transport system permease protein METI; ABC-transporter, methionine uptake transporter, membrane protein, amino-acid transport; 3.70A {Escherichia coli K12} SCOP: f.58.1.1 Back     alignment and structure
>2r6g_G Maltose transport system permease protein MALG; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} SCOP: f.58.1.1 PDB: 3fh6_G Back     alignment and structure

Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch

Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST

IdentityAlignment graphLength Definition E-value
Target 493 ABC transporter, membrane spanning protein [Candidatus
d3dhwa1203 f.58.1.1 (A:6-208) D-methionine transport system permea 2e-06
d2r6gf2244 f.58.1.1 (F:261-504) Maltose transport system permease 9e-06
>d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease protein MetI {Escherichia coli [TaxId: 562]} Length = 203 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: MetI-like
superfamily: MetI-like
family: MetI-like
domain: D-methionine transport system permease protein MetI
species: Escherichia coli [TaxId: 562]
 Score = 47.8 bits (113), Expect = 2e-06
 Identities = 32/176 (18%), Positives = 67/176 (38%), Gaps = 24/176 (13%)

Query: 253 LIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEY------APKKLRAVIKPITEMLVGIPT 306
           L+  +  T  + F++  F   IGL + + +         A  KL   +  I  +   IP 
Sbjct: 4   LVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSAIVNIFRSIPF 63

Query: 307 IVYGFFALSLVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSED 366
           I+   + +                           +  +  A + + +   P+++ + E+
Sbjct: 64  IILLVWMIPFTRVI------------------VGTSIGLQAAIVPLTVGAAPFIARMVEN 105

Query: 367 VISSIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVL 422
            +  IP  L + S  +GAT  + ++ V+ P A PG+  A  +T    +G + +   
Sbjct: 106 ALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGA 161


>d2r6gf2 f.58.1.1 (F:261-504) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]} Length = 244 Back     information, alignment and structure

Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch

IdentityAlignment graphLength Definition Probability
Target493 ABC transporter, membrane spanning protein [Candidatus
d3d31c1248 Sulfate/molybdate ABC transporter, permease protein {Me 99.93
d2onkc1252 Molybdate/tungstate transport system permease protein W 99.91
d2r6gf2244 Maltose transport system permease protein MalF {Escheri 99.87
d2r6gg1290 Maltose transport system permease protein MalG {Escheri 99.84
d3dhwa1203 D-methionine transport system permease protein MetI {Es 99.84
>d3d31c1 f.58.1.1 (C:13-260) Sulfate/molybdate ABC transporter, permease protein {Methanosarcina acetivorans [TaxId: 2214]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: MetI-like
superfamily: MetI-like
family: MetI-like
domain: Sulfate/molybdate ABC transporter, permease protein
species: Methanosarcina acetivorans [TaxId: 2214]
Probab=99.93  E-value=7.3e-24  Score=167.41  Aligned_cols=203  Identities=18%  Similarity=0.231  Sum_probs=164.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             74999999999999999999999999999998633055789999999998754489999999999999987532210013
Q gi|255764486|r  252 GLIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGFFALSLVGPFLRDISIYMNGL  331 (493)
Q Consensus       252 Gi~p~i~GTl~i~~iA~lia~Pigl~~Aiyl~eya~~~~~~~~~~~iellagiPSVVyG~f~~~~l~p~~~~~~~~~~~~  331 (493)
                      ..+..+.+|+.+++++..+++++|+..|.+++++ +.|.|+.++.+..++..+|++++|+.-...+++.        +..
T Consensus        44 ~~~~~l~~Sl~~a~~s~~i~~~lg~~~a~~~~~~-~~~~~~~~~~l~~~p~~ip~vv~~~~~~~~~~~~--------~~~  114 (248)
T d3d31c1          44 SVISSIFLSLYAGFLATLLALLLGAPTGYILARF-DFPGKRLVESIIDVPVVVPHTVAGIALLTVFGSR--------GLI  114 (248)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CCTTHHHHHHHHHGGGTSCHHHHHHHHHHHHSTT--------STT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCC--------CCC
T ss_conf             9999999999999999999999999999999864-6512568999999999999720002445203432--------111


Q ss_pred             HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             23421035575301799999999887768999999986212999988766088568999999998303369999999999
Q gi|255764486|r  332 ITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTAS  411 (493)
Q Consensus       332 ~~~~~~~~~~~~s~l~a~l~l~imilP~i~~~~~~al~~vp~~lreaa~aLGat~~~ti~~vvlP~a~~gI~~~~iL~~~  411 (493)
                      ............+.....+++..+.+|++....+++++++|++++|||..+|+||||+.+||++|..+|+++++.++++.
T Consensus       115 ~~~~~~~~~~~~~~~~iii~~~~~~~p~~~~~~~~~l~~i~~~~~eAA~~lGas~~~~~~~I~lP~~~p~i~~~~~l~f~  194 (248)
T d3d31c1         115 GEPLESYIQFRDALPGIVVAMLFVSMPYLANSAREGFKSVDPRLENAARSLGAPLWKAFFFVTLPLSARYLLIGSVMTWA  194 (248)
T ss_dssp             TGGGTTTCCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCCHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCEEEHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             11222211245642001001101100368888899997103368999876310423477898899999999999999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             998759999999412225786704671127999999850223457545899999999999999999999
Q gi|255764486|r  412 RTIGETMIVVLAAGVAARLQFNPFESMTTITVKIMNQLTGDLDFSSPQTLVAFALGLTLFCITFFLNIY  480 (493)
Q Consensus       412 RaiGETm~v~m~~G~~~~~~~~~~~~~~tlt~~I~~~~~g~~~~~~~~~~~~fa~gl~L~~~tl~~N~~  480 (493)
                      ++++|..++.++.|+           ..|++..|.++.. +.+.     ..+.|.+++++++++++..+
T Consensus       195 ~~~~~~~~~~~l~~~-----------~~~~~~~i~~~~~-~~~~-----~~a~a~a~il~~~~l~~~~v  246 (248)
T d3d31c1         195 RAISEFGAVVILAYY-----------PMVGPTLIYDRFI-SYGL-----SASRPIAVLLILVTLSIFLV  246 (248)
T ss_dssp             HHHTCCHHHHHHHCT-----------TCCHHHHHHHHHH-HSTT-----TTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCC-----------CCHHHHHHHHHHH-HCCH-----HHHHHHHHHHHHHHHHHHHH
T ss_conf             999999988733189-----------8409999999999-5589-----99999999999999999998



>d2onkc1 f.58.1.1 (C:1-252) Molybdate/tungstate transport system permease protein WtpB (ModB) {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2r6gf2 f.58.1.1 (F:261-504) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2r6gg1 f.58.1.1 (G:7-296) Maltose transport system permease protein MalG {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3dhwa1 f.58.1.1 (A:6-208) D-methionine transport system permease protein MetI {Escherichia coli [TaxId: 562]} Back     information, alignment and structure

Homologous Domains in MMDB70 Database Detected by RPS-BLAST

IdentityAlignment graphLength Definition E-value
Target 493 ABC transporter, membrane spanning protein [Candid
2onk_C_69-249181 (C:69-249) Molybdate/tungstate ABC transporter, pe 4e-13
2r6g_G_73-244172 (G:73-244) Maltose transport system permease prote 9e-13
2r6g_F_269-326_360-453152 (F:269-326,F:360-453) Maltose transport system per 3e-06
3d31_C_295 (C:) Sulfate/molybdate ABC transporter, permease p 3e-12
3dhw_A_217 (A:) D-methionine transport system permease protei 5e-11
>2onk_C (C:69-249) Molybdate/tungstate ABC transporter, permease protein; membrane protein; 3.10A {Archaeoglobus fulgidus}Length = 181 Back     alignment and structure
 Score = 70.7 bits (173), Expect = 4e-13
 Identities = 34/174 (19%), Positives = 70/174 (40%), Gaps = 11/174 (6%)

Query: 252 GLIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGF 311
            +  +++ T+Y   I+ L +V  G  +A  +A       ++V++ I ++ V IP  V G 
Sbjct: 1   AVWKVVLTTYYAALISTLIAVIFGTPLAYILARK-SFPGKSVVEGIVDLPVVIPHTVAGI 59

Query: 312 FALSLVGPFLRDISIYMNGLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSI 371
             L + G      S      +           ++    + M  + +P   + +++  +S+
Sbjct: 60  ALLVVFGSSGLIGSFSPLKFVD----------ALPGIVVAMLFVSVPIYINQAKEGFASV 109

Query: 372 PRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMTASRTIGETMIVVLAAG 425
              L   +  LG++       V  P +   I    +M+ +R I E   VV+ A 
Sbjct: 110 DVRLEHVARTLGSSPLRVFFTVSLPLSVRHIVAGAIMSWARGISEFGAVVVIAY 163


>2r6g_G (G:73-244) Maltose transport system permease protein MALG; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12}Length = 172 Back     alignment and structure
>2r6g_F (F:269-326,F:360-453) Maltose transport system permease protein MALF; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12}Length = 152 Back     alignment and structure
>3d31_C (C:) Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans}Length = 295 Back     alignment and structure
>3dhw_A (A:) D-methionine transport system permease protein METI; ABC-transporter, methionine uptake transporter, membrane protein, amino-acid transport; 3.70A {Escherichia coli K12}Length = 217 Back     alignment and structure

Homologous Domains in MMDB70 Database Detected by HHsearch

IdentityAlignment graphLength Definition Probability
Target493 ABC transporter, membrane spanning protein [Candidatus
3d31_C_295 Sulfate/molybdate ABC transporter, permease protei 99.95
3dhw_A_217 D-methionine transport system permease protein MET 99.88
2r6g_G_73-244172 Maltose transport system permease protein MALG; AB 99.91
2onk_C_69-249181 Molybdate/tungstate ABC transporter, permease prot 99.87
2r6g_F_269-326_360-453152 Maltose transport system permease protein MALF; AB 99.79
2r6g_F_64-99_249-268_454-514117 Maltose transport system permease protein MALF; AB 92.3
>3d31_C (C:) Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} Back     alignment and structure
Probab=99.95  E-value=2.9e-25  Score=178.86  Aligned_cols=215  Identities=17%  Similarity=0.196  Sum_probs=178.7

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             67749999999999999999999999999999986330557899999999987544899999999999999875322100
Q gi|255764486|r  250 QFGLIPLLIGTFYIGFIAMLFSVPIGLLIAIYMAEYAPKKLRAVIKPITEMLVGIPTIVYGFFALSLVGPFLRDISIYMN  329 (493)
Q Consensus       250 ~~Gi~p~i~GTl~i~~iA~lia~Pigl~~Aiyl~eya~~~~~~~~~~~iellagiPSVVyG~f~~~~l~p~~~~~~~~~~  329 (493)
                      +...++.+.+|+.++++++++++++|+..|++++++ +.|.|+..+....+...+|.++.++.......+..        
T Consensus        77 ~~~~~~~l~~Tl~~~~~~~~~~~~ig~~~a~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  147 (295)
T 3d31_C           77 NRSVISSIFLSLYAGFLATLLALLLGAPTGYILARF-DFPGKRLVESIIDVPVVVPHTVAGIALLTVFGSRG--------  147 (295)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CCTTHHHHHHHHHGGGTSCHHHHHHHHHHHHSTTS--------
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------
T ss_conf             989999999999999999999999999999999963-66479999999999999999999999999997266--------


Q ss_pred             HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             13234210355753017999999998877689999999862129999887660885689999999983033699999999
Q gi|255764486|r  330 GLITGNYKSFIEAQSVLTAGLVMGIMLIPYVSSLSEDVISSIPRSLRDGSLGLGATRSETMKYVIFPAAFPGIAGAILMT  409 (493)
Q Consensus       330 ~~~~~~~~~~~~~~s~l~a~l~l~imilP~i~~~~~~al~~vp~~lreaa~aLGat~~~ti~~vvlP~a~~gI~~~~iL~  409 (493)
                      ..............+.....+++.++..|++....+++++++|++++|+|..+||++||+++||++|.++|+|+++.+++
T Consensus       148 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~l~~i~~~l~eAA~~~Gas~~~~f~~I~lP~~~p~i~~~~~l~  227 (295)
T 3d31_C          148 LIGEPLESYIQFRDALPGIVVAMLFVSMPYLANSAREGFKSVDPRLENAARSLGAPLWKAFFFVTLPLSARYLLIGSVMT  227 (295)
T ss_dssp             TTTGGGTTTCCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCCHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             32430332167123999999999999999999999999975050589999876998262127746996999999999999


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99998759999999412225786704671127999999850223457545899999999999999999999999999975
Q gi|255764486|r  410 ASRTIGETMIVVLAAGVAARLQFNPFESMTTITVKIMNQLTGDLDFSSPQTLVAFALGLTLFCITFFLNIYAMYIMKKYQ  489 (493)
Q Consensus       410 ~~RaiGETm~v~m~~G~~~~~~~~~~~~~~tlt~~I~~~~~g~~~~~~~~~~~~fa~gl~L~~~tl~~N~~a~~i~~r~r  489 (493)
                      +..+++|..++.+..|+..           +++..+.++. .+.+     +..+.|.++++++++++++.+..++.||++
T Consensus       228 ~~~~~~~~~~~~~l~~~~~-----------~~~~~i~~~~-~~~~-----~~~~~a~~~i~~~~~~~~~~~~~~~~~r~~  290 (295)
T 3d31_C          228 WARAISEFGAVVILAYYPM-----------VGPTLIYDRF-ISYG-----LSASRPIAVLLILVTLSIFLVIRTLSAGWS  290 (295)
T ss_dssp             HHHHHTCCHHHHHHHCTTC-----------CHHHHHHHHH-HHST-----TTTTHHHHHHHHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHHHHHHCCCC-----------HHHHHHHHHH-HHCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999958973-----------1999999999-9448-----999999999999999999999999997603


Q ss_pred             H
Q ss_conf             4
Q gi|255764486|r  490 R  490 (493)
Q Consensus       490 ~  490 (493)
                      .
T Consensus       291 ~  291 (295)
T 3d31_C          291 I  291 (295)
T ss_dssp             -
T ss_pred             H
T ss_conf             6



>3dhw_A (A:) D-methionine transport system permease protein METI; ABC-transporter, methionine uptake transporter, membrane protein, amino-acid transport; 3.70A {Escherichia coli K12} Back     alignment and structure
>2r6g_G (G:73-244) Maltose transport system permease protein MALG; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} Back     alignment and structure
>2onk_C (C:69-249) Molybdate/tungstate ABC transporter, permease protein; membrane protein; 3.10A {Archaeoglobus fulgidus} Back     alignment and structure
>2r6g_F (F:269-326,F:360-453) Maltose transport system permease protein MALF; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} Back     alignment and structure
>2r6g_F (F:64-99,F:249-268,F:454-514) Maltose transport system permease protein MALF; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} Back     alignment and structure