254780714
tRNA (guanine-N(1)-)-methyltransferase
GeneID in NCBI database: | 8209719 | Locus tag: | CLIBASIA_03005 |
Protein GI in NCBI database: | 254780714 | Protein Accession: | YP_003065127.1 |
Gene range: | -(551696, 552406) | Protein Length: | 236aa |
Gene description: | tRNA (guanine-N(1)-)-methyltransferase | ||
COG prediction: | [J] tRNA-(guanine-N1)-methyltransferase | ||
KEGG prediction: | trmD; tRNA (guanine-N(1)-)-methyltransferase (EC:2.1.1.31); K00554 tRNA (guanine-N1-)-methyltransferase [EC:2.1.1.31] | ||
SEED prediction: | tRNA (Guanine37-N1) -methyltransferase (EC 2.1.1.31) | ||
Pathway involved in KEGG: | not defined | ||
Subsystem involved in SEED: | tRNA modification Archaea;
Ribosome biogenesis bacterial | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
---|
|
|
Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 236 | tRNA (guanine-N(1)-)-methyltransferase [Candidatus Libe | |||
315121879 | 237 | tRNA (guanine-N(1)-)-methyltransferase [Candidatus Libe | 1 | 1e-111 | |
15889955 | 232 | tRNA (guanine-N(1)-)-methyltransferase [Agrobacterium t | 1 | 1e-88 | |
325294072 | 229 | tRNA guanine-N1-methyltransferase [Agrobacterium sp. H1 | 1 | 1e-87 | |
222150104 | 249 | tRNA (guanine-N1)-methyltransferase [Agrobacterium viti | 1 | 1e-86 | |
241206761 | 243 | tRNA (guanine-N(1)-)-methyltransferase [Rhizobium legum | 1 | 3e-86 | |
222087528 | 230 | tRNA (guanine-N1)-methyltransferase [Agrobacterium radi | 1 | 4e-86 | |
116254278 | 244 | tRNA (guanine-N(1)-)-methyltransferase [Rhizobium legum | 1 | 5e-86 | |
209551325 | 233 | tRNA (guanine-N(1)-)-methyltransferase [Rhizobium legum | 1 | 7e-86 | |
190893808 | 233 | tRNA guanine-N-1-methyltransferase [Rhizobium etli CIAT | 1 | 1e-85 | |
218680102 | 233 | tRNA (guanine-N(1)-)-methyltransferase [Rhizobium etli | 1 | 1e-85 |
>gi|315121879|ref|YP_004062368.1| tRNA (guanine-N(1)-)-methyltransferase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 237 | Back alignment and organism information |
---|
Score = 404 bits (1039), Expect = e-111, Method: Compositional matrix adjust. Identities = 183/230 (79%), Positives = 217/230 (94%) Query: 1 MTFHASILTLYPEMFPGHLEKSVAGKALACNLWSMDAIQIRNFSTDRHHSVDDTPAGGGA 60 MTFHA++LTLYPE+FPGHL KS+AGKALACN+WS+D +QIR+F+TDR++SVDDTPAGGGA Sbjct: 1 MTFHATVLTLYPEIFPGHLGKSMAGKALACNVWSIDTVQIRHFATDRNNSVDDTPAGGGA 60 Query: 61 GMVLRVDILGKAIDHAVSQYTHEDIPRILMSPRGKTLTQKRVRQLSQKLGVIIVCGRFEG 120 GM+L+ D+LGKAIDHA+S+YT +DIPRILMSPRG+ L Q+RVRQ+S K G II+CG FEG Sbjct: 61 GMILKADVLGKAIDHAISKYTQKDIPRILMSPRGQPLKQERVRQISNKSGAIIICGHFEG 120 Query: 121 IDERIIEARDLEEISVGDYILSGGEPAALILLDAVVRLLPGVLGNQQSTIHESFENGLLE 180 +DERI++ARDLEEISVGDYILSGGEPAAL+LLDA+VRLLPGVLGN+QSTIHESFENGLLE Sbjct: 121 VDERIVKARDLEEISVGDYILSGGEPAALVLLDAIVRLLPGVLGNKQSTIHESFENGLLE 180 Query: 181 FPQYTRPQIWEGLAIPPILNSGDHERIKKWRKEQSFALTKKHRPDLLSKK 230 FPQYT+PQIWEGL IP +LNSG+HE+I++WR+EQS ALTKKHRPDLLSKK Sbjct: 181 FPQYTKPQIWEGLRIPSVLNSGNHEKIRQWREEQSLALTKKHRPDLLSKK 230 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|15889955|ref|NP_355636.1| tRNA (guanine-N(1)-)-methyltransferase [Agrobacterium tumefaciens str. C58] Length = 232 | Back alignment and organism information |
---|
>gi|325294072|ref|YP_004279936.1| tRNA guanine-N1-methyltransferase [Agrobacterium sp. H13-3] Length = 229 | Back alignment and organism information |
---|
>gi|222150104|ref|YP_002551061.1| tRNA (guanine-N1)-methyltransferase [Agrobacterium vitis S4] Length = 249 | Back alignment and organism information |
---|
>gi|241206761|ref|YP_002977857.1| tRNA (guanine-N(1)-)-methyltransferase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 243 | Back alignment and organism information |
---|
>gi|222087528|ref|YP_002546065.1| tRNA (guanine-N1)-methyltransferase [Agrobacterium radiobacter K84] Length = 230 | Back alignment and organism information |
---|
>gi|116254278|ref|YP_770116.1| tRNA (guanine-N(1)-)-methyltransferase [Rhizobium leguminosarum bv. viciae 3841] Length = 244 | Back alignment and organism information |
---|
>gi|209551325|ref|YP_002283242.1| tRNA (guanine-N(1)-)-methyltransferase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 233 | Back alignment and organism information |
---|
>gi|190893808|ref|YP_001980350.1| tRNA guanine-N-1-methyltransferase [Rhizobium etli CIAT 652] Length = 233 | Back alignment and organism information |
---|
>gi|218680102|ref|ZP_03527999.1| tRNA (guanine-N(1)-)-methyltransferase [Rhizobium etli CIAT 894] Length = 233 | Back alignment and organism information |
---|
Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 236 | tRNA (guanine-N(1)-)-methyltransferase [Candidatus Libe | ||
PRK00026 | 244 | PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; | 1e-105 | |
TIGR00088 | 233 | TIGR00088, trmD, tRNA (guanine-N1)-methyltransferase | 4e-73 | |
PRK01037 | 357 | PRK01037, trmD, tRNA (guanine-N(1)-)-methyltransferase/ | 2e-55 | |
PRK14599 | 222 | PRK14599, trmD, tRNA (guanine-N(1)-)-methyltransferase/ | 3e-37 | |
COG0336 | 240 | COG0336, TrmD, tRNA-(guanine-N1)-methyltransferase [Tra | 2e-89 | |
pfam01746 | 185 | pfam01746, tRNA_m1G_MT, tRNA (Guanine-1)-methyltransfer | 3e-33 |
>gnl|CDD|178803 PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed | Back alignment and domain information |
---|
>gnl|CDD|129196 TIGR00088, trmD, tRNA (guanine-N1)-methyltransferase | Back alignment and domain information |
---|
>gnl|CDD|134469 PRK01037, trmD, tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed | Back alignment and domain information |
---|
>gnl|CDD|173063 PRK14599, trmD, tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Provisional | Back alignment and domain information |
---|
>gnl|CDD|30684 COG0336, TrmD, tRNA-(guanine-N1)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
---|
>gnl|CDD|110724 pfam01746, tRNA_m1G_MT, tRNA (Guanine-1)-methyltransferase | Back alignment and domain information |
---|
Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 236 | tRNA (guanine-N(1)-)-methyltransferase [Candidatus Libe | ||
TIGR00088 | 247 | trmD tRNA (guanine-N1)-methyltransferase; InterPro: IPR | 100.0 | |
PRK00026 | 226 | trmD tRNA (guanine-N(1)-)-methyltransferase; Reviewed | 100.0 | |
COG0336 | 240 | TrmD tRNA-(guanine-N1)-methyltransferase [Translation, | 100.0 | |
PRK01037 | 357 | trmD tRNA (guanine-N(1)-)-methyltransferase/unknown dom | 100.0 | |
pfam01746 | 185 | tRNA_m1G_MT tRNA (Guanine-1)-methyltransferase. This is | 100.0 | |
COG1576 | 155 | Uncharacterized conserved protein [Function unknown] | 96.08 | |
pfam02590 | 155 | SPOUT_MTase Predicted SPOUT methyltransferase. This fam | 95.87 | |
PRK00103 | 156 | SPOUT methyltransferase superfamily protein; Provisiona | 95.67 | |
KOG3073 | 236 | consensus | 90.15 |
>TIGR00088 trmD tRNA (guanine-N1)-methyltransferase; InterPro: IPR002649 In transfer RNA many different modified nucleosides are found, especially in the anticodon region | Back alignment and domain information |
---|
>PRK00026 trmD tRNA (guanine-N(1)-)-methyltransferase; Reviewed | Back alignment and domain information |
---|
>COG0336 TrmD tRNA-(guanine-N1)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
---|
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed | Back alignment and domain information |
---|
>pfam01746 tRNA_m1G_MT tRNA (Guanine-1)-methyltransferase | Back alignment and domain information |
---|
>COG1576 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
---|
>pfam02590 SPOUT_MTase Predicted SPOUT methyltransferase | Back alignment and domain information |
---|
>PRK00103 SPOUT methyltransferase superfamily protein; Provisional | Back alignment and domain information |
---|
>KOG3073 consensus | Back alignment and domain information |
---|
Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
Identity | Alignment graph | Length | Definition | E-value |
Target | 236 | tRNA (guanine-N(1)-)-methyltransferase [Candidatus Libe | ||
3ky7_A | 269 | 2.35 Angstrom Resolution Crystal Structure Of A Put | 4e-79 | |
1p9p_A | 261 | The Crystal Structure Of A M1g37 Trna Methyltransfe | 9e-76 | |
1uaj_A | 274 | Crystal Structure Of Trna(M1g37)methyltransferase: | 2e-75 | |
3knu_A | 253 | Crystal Structure Of Trna (Guanine-N1)-Methyltransf | 2e-72 | |
3ief_A | 233 | Crystal Structure Of Trna Guanine-N1-Methyltransfer | 5e-72 | |
3quv_A | 246 | Crystal Structure Of A Trna-Guanine-N1-Methyltransf | 5e-64 | |
1oy5_A | 257 | Crystal Structure Of Trna (M1g37) Methyltransferase | 9e-60 |
>gi|281501004|pdb|3KY7|A Chain A, 2.35 Angstrom Resolution Crystal Structure Of A Putative Trna (Guanine-7-)-Methyltransferase (Trmd) From Staphylococcus Aureus Subsp. Aureus Mrsa252 Length = 269 | Back alignment and structure |
Score = 298 bits (764), Expect = 4e-79, Method: Composition-based stats. Identities = 98/233 (42%), Positives = 144/233 (61%), Gaps = 3/233 (1%) Query: 2 TFHASILTLYPEMFPGHLEKSVAGKALACNLWSMDAIQIRNFSTDRHHSVDDTPAGGGAG 61 LTL+PEMF G L S+ +A N ++ + R+++ ++H+ VDD P GGG G Sbjct: 24 AMKIDYLTLFPEMFDGVLNHSIMKRAQENNKLQINTVNFRDYAINKHNQVDDYPYGGGQG 83 Query: 62 MVLRVDILGKAIDHAVSQYTHEDIPRILMSPRGKTLTQKRVRQLSQKLGVIIVCGRFEGI 121 MVL+ + + A++ E ILM P+G+ + ++ +LS+ ++ +CG +EG Sbjct: 84 MVLKPEPVFNAMEDLDVT---EQARVILMXPQGEPFSHQKAVELSKADHIVFICGHYEGY 140 Query: 122 DERIIEARDLEEISVGDYILSGGEPAALILLDAVVRLLPGVLGNQQSTIHESFENGLLEF 181 DERI +EIS+GDY+L+GGE A+ + DA+VRL+PGVLGN+QS +SF +GLLEF Sbjct: 141 DERIRTHLVTDEISMGDYVLTGGELPAMTMTDAIVRLIPGVLGNEQSHQDDSFSDGLLEF 200 Query: 182 PQYTRPQIWEGLAIPPILNSGDHERIKKWRKEQSFALTKKHRPDLLSKKGTLN 234 PQYTRP+ ++GL +P +L SG+H I WR EQ T RPDL+ K N Sbjct: 201 PQYTRPREFKGLTVPDVLLSGNHANIDAWRHEQKLIRTYNKRPDLIEKYPLTN 253 |
>gi|49258440|pdb|1P9P|A Chain A, The Crystal Structure Of A M1g37 Trna Methyltransferase, Trmd Length = 261 | Back alignment and structure |
>gi|33358175|pdb|1UAJ|A Chain A, Crystal Structure Of Trna(M1g37)methyltransferase: Insight Into Trna Recognition Length = 274 | Back alignment and structure |
>gi|269914658|pdb|3KNU|A Chain A, Crystal Structure Of Trna (Guanine-N1)-Methyltransferase From Anaplasma Phagocytophilum Length = 253 | Back alignment and structure |
>gi|255918022|pdb|3IEF|A Chain A, Crystal Structure Of Trna Guanine-N1-Methyltransferase From Bartonella Henselae Using Mpcs. Length = 233 | Back alignment and structure |
>gi|326328080|pdb|3QUV|A Chain A, Crystal Structure Of A Trna-Guanine-N1-Methyltransferase From Mycobacterium Abscessus Length = 246 | Back alignment and structure |
gi|39654400|pdb|1OY5|A Chain A, Crystal Structure Of Trna (M1g37) Methyltransferase From Aquifex Aeolicus Length = 257 | Back alignment and structure |
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 236 | tRNA (guanine-N(1)-)-methyltransferase [Candidatus Libe | ||
3ief_A | 233 | TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid, | 5e-97 | |
3ky7_A | 269 | TRNA (guanine-N(1)-)-methyltransferase; putative tRNA ( | 5e-84 | |
1oy5_A | 257 | TRNA (guanine-N(1)-)-methyltransferase; structural geno | 4e-80 | |
3knu_A | 253 | TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid, | 8e-71 | |
1ual_A | 274 | TRNA (guanine-N(1)-)-methyltransferase; spout class, TR | 1e-70 | |
2v3j_A | 258 | Essential for mitotic growth 1; EMG1, rRNA processing, | 5e-13 |
>3ief_A TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid, seattle structural genomics center for infectious diseases; 2.50A {Bartonella henselae} Length = 233 | Back alignment and structure |
---|
Score = 348 bits (896), Expect = 5e-97 Identities = 141/229 (61%), Positives = 178/229 (77%), Gaps = 5/229 (2%) Query: 1 MTFHASILTLYPEMFPGHLEKSVAGKALACNLWSMDAIQIRNFSTDRHHSVDDTPAGGGA 60 M F A +LTLYPEMFPG L S+AG+AL +WS++ +QIR+F+ D+HHSVDDTPAGGGA Sbjct: 2 MKFQARVLTLYPEMFPGFLGCSLAGQALKQGIWSLETVQIRDFALDKHHSVDDTPAGGGA 61 Query: 61 GMVLRVDILGKAIDHAVSQYTHEDIPRILMSPRGKTLTQKRVRQLSQKLGVIIVCGRFEG 120 GMV+R D+L A+D D PR+LMSPRG+ L Q R L++ GV +VCGRFEG Sbjct: 62 GMVMRADVLAAALDSC-----PNDSPRLLMSPRGRLLNQAYARSLARSSGVTLVCGRFEG 116 Query: 121 IDERIIEARDLEEISVGDYILSGGEPAALILLDAVVRLLPGVLGNQQSTIHESFENGLLE 180 +DERIIEAR+LEE+S+GDYILSGGE AAL+LLDA+VRLLPGV+GN+ S ESFENGLLE Sbjct: 117 VDERIIEARELEEVSIGDYILSGGETAALVLLDAIVRLLPGVMGNEISAKCESFENGLLE 176 Query: 181 FPQYTRPQIWEGLAIPPILNSGDHERIKKWRKEQSFALTKKHRPDLLSK 229 PQYTRP ++EG IPP+L SG H+ I WR++Q+ +LT++ RPDL + Sbjct: 177 HPQYTRPAVFEGRGIPPVLTSGHHKAIANWRQQQAESLTRQRRPDLYAL 225 |
>3ky7_A TRNA (guanine-N(1)-)-methyltransferase; putative tRNA (guanine-7-)-methyltransferase, structural genomics, infectious diseases; 2.35A {Staphylococcus aureus subsp} Length = 269 | Back alignment and structure |
---|
>1oy5_A TRNA (guanine-N(1)-)-methyltransferase; structural genomics, TRMD, tRNA (M1G37) methyltransferase, BSGC structure funded by NIH; 2.60A {Aquifex aeolicus} SCOP: c.116.1.4 Length = 257 | Back alignment and structure |
---|
>3knu_A TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid, seattle structural genomics center for infectious disease; 2.25A {Anaplasma phagocytophilum HZ} Length = 253 | Back alignment and structure |
---|
>1ual_A TRNA (guanine-N(1)-)-methyltransferase; spout class, TRMD, tRNA(M1G37) methyltransferase, tRNA modification; HET: SAH; 1.80A {Haemophilus influenzae} SCOP: c.116.1.4 PDB: 1uak_A* 1uaj_A* 1uam_A* 1p9p_A* Length = 274 | Back alignment and structure |
---|
>2v3j_A Essential for mitotic growth 1; EMG1, rRNA processing, nuclear protein, ribonucleoprotein, ribosome biogenesis; 2.00A {Saccharomyces cerevisiae} SCOP: c.116.1.6 PDB: 2v3k_A* Length = 258 | Back alignment and structure |
---|
Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 236 | tRNA (guanine-N(1)-)-methyltransferase [Candidatus Libe | ||
1ual_A | 274 | TRNA (guanine-N(1)-)-methyltransferase; spout class, TR | 100.0 | |
3ky7_A | 269 | TRNA (guanine-N(1)-)-methyltransferase; putative tRNA ( | 100.0 | |
3ief_A | 233 | TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid, | 100.0 | |
3knu_A | 253 | TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid, | 100.0 | |
1oy5_A | 257 | TRNA (guanine-N(1)-)-methyltransferase; structural geno | 100.0 | |
2v3j_A | 258 | Essential for mitotic growth 1; EMG1, rRNA processing, | 99.16 | |
1o6d_A | 163 | Hypothetical UPF0247 protein TM0844; structural genomic | 97.48 | |
1vh0_A | 161 | Hypothetical UPF0247 protein SAV0024/SA0023; structural | 97.25 | |
1to0_A | 167 | Hypothetical UPF0247 protein YYDA; structural genomics, | 96.73 | |
1ns5_A | 155 | Hypothetical protein YBEA; structural genomics, PSI, pr | 94.25 |
>1ual_A TRNA (guanine-N(1)-)-methyltransferase; spout class, TRMD, tRNA(M1G37) methyltransferase, tRNA modification; HET: SAH; 1.80A {Haemophilus influenzae} SCOP: c.116.1.4 PDB: 1uak_A* 1uaj_A* 1uam_A* 1p9p_A* | Back alignment and structure |
---|
Probab=100.00 E-value=0 Score=768.08 Aligned_cols=234 Identities=45% Similarity=0.791 Sum_probs=227.4 Q ss_pred CEEEEEEEECHHHHHHHHCCCHHHHHHHCCCEEEEEECCHHHCCCCCCEEEECCCCCCCCEEEECHHHHHHHHHHHHHCC Q ss_conf 54589985183564456403367999974965999960256358985135311306888617750588999998753114 Q gi|254780714|r 2 TFHASILTLYPEMFPGHLEKSVAGKALACNLWSMDAIQIRNFSTDRHHSVDDTPAGGGAGMVLRVDILGKAIDHAVSQYT 81 (236) Q Consensus 2 ~Mki~IITlFPe~f~~~l~~sIigkA~~~gli~i~~~dlRdfs~~kh~~VDD~PyGGG~GMVlk~epi~~ai~~~~~~~~ 81 (236) .|+|+|||||||||++++++||+|||+++|+|+++++|||||+.|||++|||+||||||||||||||+++|++++++.. T Consensus 20 ~M~i~IiTLFPe~f~~~l~~sIigrA~~kgli~i~~~nlRdfs~~kh~~VDD~PyGGG~GMVm~~ePl~~ai~~~~~~~- 98 (274) T 1ual_A 20 HMWIGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGMLMMVQPLRDAIHTAKAAA- 98 (274) T ss_dssp CEEEEEECSCGGGGHHHHSSHHHHHHHHTTSEEEEEECGGGGCCSTTCCCEECCTTCCSCCEECHHHHHHHHHHHHHHH- T ss_pred CCEEEEEEECHHHHHHHHHCCHHHHHHHCCCEEEEEECHHHHCCCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHCC- T ss_conf 7879999988565231433338999998797699987836608898886567868999852664488899999977415- Q ss_pred CCCCCEEEECCCCCEECHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCEEEHHEEECCCCHHHHHHHHHHHHHHCC Q ss_conf 77830899879987604899999730287599941501144899974045310033401117327799999999985057 Q gi|254780714|r 82 HEDIPRILMSPRGKTLTQKRVRQLSQKLGVIIVCGRFEGIDERIIEARDLEEISVGDYILSGGEPAALILLDAVVRLLPG 161 (236) Q Consensus 82 ~~~~~vI~lSP~Gk~l~Q~~a~~ls~~~~liliCGrYEGiDeRvid~~~d~eiSiGDyVLsGGEl~a~v~~dai~RlipG 161 (236) .++.+|||+||||++|||+.|++|+++++|||||||||||||||+|+++|+|||||||||||||+||||++||++||+|| T Consensus 99 ~~~~~VI~lSP~Gk~f~Q~~a~~ls~~~~liliCGrYEGiDeRvie~~vd~eiSIGDyVLsGGEl~AmviiDav~RllPG 178 (274) T 1ual_A 99 GEGAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDERLIQTEIDEEWSIGDYVLTGGELPAMTLIDAVARFIPG 178 (274) T ss_dssp CTTCEEEEEEEEEEECCHHHHHHHTTCSEEEEECCCTTCCCHHHHHHHCSEEEESSSSCCSCSHHHHHHHHHHHHTTSTT T ss_pred CCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCEEEECCCEEEECCHHHHHHHHHHHHHHCCC T ss_conf 88743998787507666899985335662899965510075999986351585404688608479999999999995788 Q ss_pred CCCCCCCCCCCCHHCCCCCCCCCCCHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCC Q ss_conf 467822233440114884621116725408988984341899899999999999999987686268630563469 Q gi|254780714|r 162 VLGNQQSTIHESFENGLLEFPQYTRPQIWEGLAIPPILNSGDHERIKKWRKEQSFALTKKHRPDLLSKKGTLNTQ 236 (236) Q Consensus 162 vlg~~~S~~~eSf~~~lLe~P~YTrP~~~~g~~VP~VLlSGnH~~I~~Wr~~~s~~~T~~~RPDL~~~~~~~~~e 236 (236) ||||++|+.+|||+||||||||||||++|+|++||+|||||||++|++||++||+++|+++|||||++.+++++| T Consensus 179 VLgn~~S~~~eSF~~~lLe~P~YTRP~~~~g~~VPeVLlSGnH~~I~~WR~~~sl~~T~~~RPDLl~~~~l~~~e 253 (274) T 1ual_A 179 VLGKQASAEEDSFADGLLDCPHYTRPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLRRPELLEGLALTDEQ 253 (274) T ss_dssp CC---------CCSSSSCCCCCCCSCSEETTEECCGGGGSCCHHHHHHHHHHHHHHHHHHHCHHHHHTCCCCHHH T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCHHH T ss_conf 668800111145758988898769942129998994224899799999999999999987696899875899999 |
>3ky7_A TRNA (guanine-N(1)-)-methyltransferase; putative tRNA (guanine-7-)-methyltransferase, structural genomics, infectious diseases; 2.35A {Staphylococcus aureus subsp} | Back alignment and structure |
---|
>3ief_A TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid, seattle structural genomics center for infectious diseases; 2.50A {Bartonella henselae} | Back alignment and structure |
---|
>3knu_A TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid, seattle structural genomics center for infectious disease; 2.25A {Anaplasma phagocytophilum HZ} | Back alignment and structure |
---|
>1oy5_A TRNA (guanine-N(1)-)-methyltransferase; structural genomics, TRMD, tRNA (M1G37) methyltransferase, BSGC structure funded by NIH; 2.60A {Aquifex aeolicus} SCOP: c.116.1.4 | Back alignment and structure |
---|
>2v3j_A Essential for mitotic growth 1; EMG1, rRNA processing, nuclear protein, ribonucleoprotein, ribosome biogenesis; 2.00A {Saccharomyces cerevisiae} SCOP: c.116.1.6 PDB: 2v3k_A* | Back alignment and structure |
---|
>1o6d_A Hypothetical UPF0247 protein TM0844; structural genomics, unknown function; 1.66A {Thermotoga maritima} SCOP: c.116.1.3 | Back alignment and structure |
---|
>1vh0_A Hypothetical UPF0247 protein SAV0024/SA0023; structural genomics, unknown function; 2.31A {Staphylococcus aureus} SCOP: c.116.1.3 | Back alignment and structure |
---|
>1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown function, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: c.116.1.3 | Back alignment and structure |
---|
>1ns5_A Hypothetical protein YBEA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.68A {Escherichia coli} SCOP: c.116.1.3 | Back alignment and structure |
---|
Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | E-value |
236 | tRNA (guanine-N(1)-)-methyltransferase [Candidatus Libe | |||
d1uala_ | 252 | c.116.1.4 (A:) tRNA(m1G37)-methyltransferase TrmD {Haem | 1e-69 | |
d1oy5a_ | 232 | c.116.1.4 (A:) tRNA(m1G37)-methyltransferase TrmD {Aqui | 2e-64 | |
d2v3ka1 | 227 | c.116.1.6 (A:25-251) Essential for mitotic growth 1, EM | 5e-18 |
>d1uala_ c.116.1.4 (A:) tRNA(m1G37)-methyltransferase TrmD {Haemophilus influenzae [TaxId: 727]} Length = 252 | Back information, alignment and structure |
---|
class: Alpha and beta proteins (a/b) fold: alpha/beta knot superfamily: alpha/beta knot family: tRNA(m1G37)-methyltransferase TrmD domain: tRNA(m1G37)-methyltransferase TrmD species: Haemophilus influenzae [TaxId: 727] Score = 256 bits (655), Expect = 1e-69 Identities = 105/226 (46%), Positives = 145/226 (64%), Gaps = 1/226 (0%) Query: 6 SILTLYPEMFPGHLEKSVAGKALACNLWSMDAIQIRNFSTDRHHSVDDTPAGGGAGMVLR 65 +++L+PEMF E V G+A+ NL ++ R+F+ D+H +VDD P GGG GM++ Sbjct: 6 GVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGMLMM 65 Query: 66 VDILGKAIDHAVSQYTHEDIPRILMSPRGKTLTQKRVRQLSQKLGVIIVCGRFEGIDERI 125 V L AI A E I +SP+G+ L Q V +L+Q +I+VCGR+EGIDER+ Sbjct: 66 VQPLRDAIHTAK-AAAGEGAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDERL 124 Query: 126 IEARDLEEISVGDYILSGGEPAALILLDAVVRLLPGVLGNQQSTIHESFENGLLEFPQYT 185 I+ EE S+GDY+L+GGE A+ L+DAV R +PGVLG Q S +SF +GLL+ P YT Sbjct: 125 IQTEIDEEWSIGDYVLTGGELPAMTLIDAVARFIPGVLGKQASAEEDSFADGLLDCPHYT 184 Query: 186 RPQIWEGLAIPPILNSGDHERIKKWRKEQSFALTKKHRPDLLSKKG 231 RP++ EGL +PP+L SG HE I+KWR +QS T RP+LL Sbjct: 185 RPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLRRPELLEGLA 230 |
>d1oy5a_ c.116.1.4 (A:) tRNA(m1G37)-methyltransferase TrmD {Aquifex aeolicus [TaxId: 63363]} Length = 232 | Back information, alignment and structure |
---|
>d2v3ka1 c.116.1.6 (A:25-251) Essential for mitotic growth 1, EMG1 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 227 | Back information, alignment and structure |
---|
Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | Probability |
Target | 236 | tRNA (guanine-N(1)-)-methyltransferase [Candidatus Libe | ||
d1uala_ | 252 | tRNA(m1G37)-methyltransferase TrmD {Haemophilus influen | 100.0 | |
d1oy5a_ | 232 | tRNA(m1G37)-methyltransferase TrmD {Aquifex aeolicus [T | 100.0 | |
d2v3ka1 | 227 | Essential for mitotic growth 1, EMG1 {Saccharomyces cer | 99.31 | |
d1o6da_ | 147 | Hypothetical protein TM0844 {Thermotoga maritima [TaxId | 96.76 | |
d1vh0a_ | 157 | Hypothetical protein SAV0024/SA0023 {Staphylococcus aur | 95.21 | |
d1to0a_ | 157 | Hypothetical protein YydA {Bacillus subtilis [TaxId: 14 | 94.43 | |
d1ns5a_ | 153 | Hypothetical protein YbeA {Escherichia coli [TaxId: 562 | 94.17 |
>d1uala_ c.116.1.4 (A:) tRNA(m1G37)-methyltransferase TrmD {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
---|
class: Alpha and beta proteins (a/b) fold: alpha/beta knot superfamily: alpha/beta knot family: tRNA(m1G37)-methyltransferase TrmD domain: tRNA(m1G37)-methyltransferase TrmD species: Haemophilus influenzae [TaxId: 727] Probab=100.00 E-value=0 Score=769.94 Aligned_cols=234 Identities=45% Similarity=0.795 Sum_probs=227.4 Q ss_pred CEEEEEEEECHHHHHHHHCCCHHHHHHHCCCEEEEEECCHHHCCCCCCEEEECCCCCCCCEEEECHHHHHHHHHHHHHCC Q ss_conf 54589985183564456403367999974965999960256358985135311306888617750588999998753114 Q gi|254780714|r 2 TFHASILTLYPEMFPGHLEKSVAGKALACNLWSMDAIQIRNFSTDRHHSVDDTPAGGGAGMVLRVDILGKAIDHAVSQYT 81 (236) Q Consensus 2 ~Mki~IITlFPe~f~~~l~~sIigkA~~~gli~i~~~dlRdfs~~kh~~VDD~PyGGG~GMVlk~epi~~ai~~~~~~~~ 81 (236) .|+|+|||||||||++++++||+|||+++|+|++++||||||+.|||++|||+||||||||||||||+++|++++++. . T Consensus 2 ~M~i~IiTLFPe~f~~~l~~sIigrA~~~~lv~i~~~nlRdfs~dkhr~VDD~PyGGGpGMVmk~ePl~~ai~~~~~~-~ 80 (252) T d1uala_ 2 HMWIGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGMLMMVQPLRDAIHTAKAA-A 80 (252) T ss_dssp CEEEEEECSCGGGGHHHHSSHHHHHHHHTTSEEEEEECGGGGCCSTTCCCEECCTTCCSCCEECHHHHHHHHHHHHHH-H T ss_pred CCEEEEEEECHHHHHHHHHCCHHHHHHHCCCEEEEEECHHHHCCCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHC-C T ss_conf 867999998846401122243899999879669999881661789886727786789986304135688999997640-3 Q ss_pred CCCCCEEEECCCCCEECHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCEEEHHEEECCCCHHHHHHHHHHHHHHCC Q ss_conf 77830899879987604899999730287599941501144899974045310033401117327799999999985057 Q gi|254780714|r 82 HEDIPRILMSPRGKTLTQKRVRQLSQKLGVIIVCGRFEGIDERIIEARDLEEISVGDYILSGGEPAALILLDAVVRLLPG 161 (236) Q Consensus 82 ~~~~~vI~lSP~Gk~l~Q~~a~~ls~~~~liliCGrYEGiDeRvid~~~d~eiSiGDyVLsGGEl~a~v~~dai~RlipG 161 (236) .++.+||||||||++|||++|++||+.++|||||||||||||||+|+++|+|||||||||||||+||||++||++||+|| T Consensus 81 ~~~~~vI~lSP~Gk~f~Q~~a~~ls~~~~liliCGrYEGiDeRv~~~~~d~eiSiGDyVLsGGEl~A~v~idai~Rl~PG 160 (252) T d1uala_ 81 GEGAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDERLIQTEIDEEWSIGDYVLTGGELPAMTLIDAVARFIPG 160 (252) T ss_dssp CTTCEEEEEEEEEEECCHHHHHHHTTCSEEEEECCCTTCCCHHHHHHHCSEEEESSSSCCSCSHHHHHHHHHHHHTTSTT T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCEEEECCCEEEECCCHHHHHHHHHHHHHHCC T ss_conf 77783798889987503699987513562899956510076788875211353314688716645776668999998448 Q ss_pred CCCCCCCCCCCCHHCCCCCCCCCCCHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCC Q ss_conf 467822233440114884621116725408988984341899899999999999999987686268630563469 Q gi|254780714|r 162 VLGNQQSTIHESFENGLLEFPQYTRPQIWEGLAIPPILNSGDHERIKKWRKEQSFALTKKHRPDLLSKKGTLNTQ 236 (236) Q Consensus 162 vlg~~~S~~~eSf~~~lLe~P~YTrP~~~~g~~VP~VLlSGnH~~I~~Wr~~~s~~~T~~~RPDL~~~~~~~~~e 236 (236) ||||++|+.+|||+||||||||||||++|+|++||+|||||||++|++||++||+++|+++|||||+++.++++| T Consensus 161 vlg~~~S~~~eSF~~~lLe~P~YTrP~~~~g~~VPeVLlSG~H~~I~~Wr~~~sl~~T~~~RPDL~~~~~l~~~~ 235 (252) T d1uala_ 161 VLGKQASAEEDSFADGLLDCPHYTRPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLRRPELLEGLALTDEQ 235 (252) T ss_dssp CC---------CCSSSSCCCCCCCSCSEETTEECCGGGGSCCHHHHHHHHHHHHHHHHHHHCHHHHHTCCCCHHH T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCHHH T ss_conf 567732221023548886875224745238999890110799699999999999999987796899866899999 |
>d1oy5a_ c.116.1.4 (A:) tRNA(m1G37)-methyltransferase TrmD {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
---|
>d2v3ka1 c.116.1.6 (A:25-251) Essential for mitotic growth 1, EMG1 {Saccharomyces cerevisiae [TaxId: 4932]} | Back information, alignment and structure |
---|
>d1o6da_ c.116.1.3 (A:) Hypothetical protein TM0844 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
---|
>d1vh0a_ c.116.1.3 (A:) Hypothetical protein SAV0024/SA0023 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
---|
>d1to0a_ c.116.1.3 (A:) Hypothetical protein YydA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
---|
>d1ns5a_ c.116.1.3 (A:) Hypothetical protein YbeA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
---|
Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 236 | tRNA (guanine-N(1)-)-methyltransferase [Candidatus | ||
3ief_A_1-168 | 168 | (A:1-168) TRNA (guanine-N(1)-)-methyltransferase; | 4e-66 | |
3ky7_A_1-192 | 192 | (A:1-192) TRNA (guanine-N(1)-)-methyltransferase; | 9e-66 | |
1ual_A_1-189 | 189 | (A:1-189) TRNA (guanine-N(1)-)-methyltransferase; | 1e-65 | |
3knu_A_1-188 | 188 | (A:1-188) TRNA (guanine-N(1)-)-methyltransferase; | 1e-65 | |
1oy5_A_1-171 | 171 | (A:1-171) TRNA (guanine-N(1)-)-methyltransferase; | 2e-63 | |
3ief_A_169-233 | 65 | (A:169-233) TRNA (guanine-N(1)-)-methyltransferase | 5e-22 | |
1ual_A_190-274 | 85 | (A:190-274) TRNA (guanine-N(1)-)-methyltransferase | 9e-22 | |
3knu_A_189-253 | 65 | (A:189-253) TRNA (guanine-N(1)-)-methyltransferase | 8e-21 | |
1oy5_A_172-221 | 50 | (A:172-221) TRNA (guanine-N(1)-)-methyltransferase | 2e-18 | |
3ky7_A_219-269 | 51 | (A:219-269) TRNA (guanine-N(1)-)-methyltransferase | 4e-07 |
>3ief_A (A:1-168) TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid, seattle structural genomics center for infectious diseases; 2.50A {Bartonella henselae}Length = 168 | Back alignment and structure |
---|
Score = 245 bits (627), Expect = 4e-66 Identities = 108/172 (62%), Positives = 134/172 (77%), Gaps = 5/172 (2%) Query: 1 MTFHASILTLYPEMFPGHLEKSVAGKALACNLWSMDAIQIRNFSTDRHHSVDDTPAGGGA 60 M F A +LTLYPEMFPG L S+AG+AL +WS++ +QIR+F+ D+HHSVDDTPAGGGA Sbjct: 2 MKFQARVLTLYPEMFPGFLGCSLAGQALKQGIWSLETVQIRDFALDKHHSVDDTPAGGGA 61 Query: 61 GMVLRVDILGKAIDHAVSQYTHEDIPRILMSPRGKTLTQKRVRQLSQKLGVIIVCGRFEG 120 GMV+R D+L A+D D PR+LMSPRG+ L Q R L++ GV +VCGRFEG Sbjct: 62 GMVMRADVLAAALDSC-----PNDSPRLLMSPRGRLLNQAYARSLARSSGVTLVCGRFEG 116 Query: 121 IDERIIEARDLEEISVGDYILSGGEPAALILLDAVVRLLPGVLGNQQSTIHE 172 +DERIIEAR+LEE+S+GDYILSGGE AAL+LLDA+VRLLPGV+GN+ S E Sbjct: 117 VDERIIEARELEEVSIGDYILSGGETAALVLLDAIVRLLPGVMGNEISAKCE 168 |
>3ky7_A (A:1-192) TRNA (guanine-N(1)-)-methyltransferase; putative tRNA (guanine-7-)-methyltransferase, structural genomics, infectious diseases; 2.35A {Staphylococcus aureus subsp}Length = 192 | Back alignment and structure |
---|
>1ual_A (A:1-189) TRNA (guanine-N(1)-)-methyltransferase; spout class, TRMD, tRNA(M1G37) methyltransferase, tRNA modification; HET: SAH; 1.80A {Haemophilus influenzae}Length = 189 | Back alignment and structure |
---|
>3knu_A (A:1-188) TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid, seattle structural genomics center for infectious disease; 2.25A {Anaplasma phagocytophilum HZ}Length = 188 | Back alignment and structure |
---|
>1oy5_A (A:1-171) TRNA (guanine-N(1)-)-methyltransferase; structural genomics, TRMD, tRNA (M1G37) methyltransferase, BSGC structure funded by NIH; 2.60A {Aquifex aeolicus}Length = 171 | Back alignment and structure |
---|
>3ief_A (A:169-233) TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid, seattle structural genomics center for infectious diseases; 2.50A {Bartonella henselae}Length = 65 | Back alignment and structure |
---|
>1ual_A (A:190-274) TRNA (guanine-N(1)-)-methyltransferase; spout class, TRMD, tRNA(M1G37) methyltransferase, tRNA modification; HET: SAH; 1.80A {Haemophilus influenzae}Length = 85 | Back alignment and structure |
---|
>3knu_A (A:189-253) TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid, seattle structural genomics center for infectious disease; 2.25A {Anaplasma phagocytophilum HZ}Length = 65 | Back alignment and structure |
---|
>1oy5_A (A:172-221) TRNA (guanine-N(1)-)-methyltransferase; structural genomics, TRMD, tRNA (M1G37) methyltransferase, BSGC structure funded by NIH; 2.60A {Aquifex aeolicus}Length = 50 | Back alignment and structure |
---|
>3ky7_A (A:219-269) TRNA (guanine-N(1)-)-methyltransferase; putative tRNA (guanine-7-)-methyltransferase, structural genomics, infectious diseases; 2.35A {Staphylococcus aureus subsp}Length = 51 | Back alignment and structure |
---|
Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 236 | tRNA (guanine-N(1)-)-methyltransferase [Candidatus Libe | ||
1ual_A_1-189 | 189 | TRNA (guanine-N(1)-)-methyltransferase; spout clas | 100.0 | |
3ky7_A_1-192 | 192 | TRNA (guanine-N(1)-)-methyltransferase; putative t | 100.0 | |
3knu_A_1-188 | 188 | TRNA (guanine-N(1)-)-methyltransferase; niaid, ssg | 100.0 | |
3ief_A_1-168 | 168 | TRNA (guanine-N(1)-)-methyltransferase; niaid, ssg | 100.0 | |
1oy5_A_1-171 | 171 | TRNA (guanine-N(1)-)-methyltransferase; structural | 100.0 | |
1o6d_A_ | 163 | Hypothetical UPF0247 protein TM0844; structural ge | 94.91 | |
1vh0_A_ | 161 | Hypothetical UPF0247 protein SAV0024/SA0023; struc | 94.22 | |
1ual_A_190-274 | 85 | TRNA (guanine-N(1)-)-methyltransferase; spout clas | 99.93 | |
3ief_A_169-233 | 65 | TRNA (guanine-N(1)-)-methyltransferase; niaid, ssg | 99.92 | |
3knu_A_189-253 | 65 | TRNA (guanine-N(1)-)-methyltransferase; niaid, ssg | 99.9 | |
1oy5_A_172-221 | 50 | TRNA (guanine-N(1)-)-methyltransferase; structural | 99.79 | |
3ky7_A_219-269 | 51 | TRNA (guanine-N(1)-)-methyltransferase; putative t | 99.08 | |
2v3j_A_ | 258 | Essential for mitotic growth 1; EMG1, rRNA process | 96.75 | |
1to0_A_ | 167 | Hypothetical UPF0247 protein YYDA; structural geno | 95.05 | |
1ns5_A_ | 155 | Hypothetical protein YBEA; structural genomics, PS | 95.08 |
>1ual_A (A:1-189) TRNA (guanine-N(1)-)-methyltransferase; spout class, TRMD, tRNA(M1G37) methyltransferase, tRNA modification; HET: SAH; 1.80A {Haemophilus influenzae} | Back alignment and structure |
---|
Probab=100.00 E-value=0 Score=545.22 Aligned_cols=170 Identities=44% Similarity=0.749 Sum_probs=165.2 Q ss_pred CEEEEEEEECHHHHHHHHCCCHHHHHHHCCCEEEEEECCHHHCCCCCCEEEECCCCCCCCEEEECHHHHHHHHHHHHHCC Q ss_conf 54589985183564456403367999974965999960256358985135311306888617750588999998753114 Q gi|254780714|r 2 TFHASILTLYPEMFPGHLEKSVAGKALACNLWSMDAIQIRNFSTDRHHSVDDTPAGGGAGMVLRVDILGKAIDHAVSQYT 81 (236) Q Consensus 2 ~Mki~IITlFPe~f~~~l~~sIigkA~~~gli~i~~~dlRdfs~~kh~~VDD~PyGGG~GMVlk~epi~~ai~~~~~~~~ 81 (236) .|+|+|+|||||||++++++||+|||+++|+|++++||||||+.||||+|||+||||||||||||||+++|+++++++. T Consensus 20 ~M~i~vlTLFPe~f~~~l~~siigrA~~~gl~~i~~~nlRdf~~dkh~~VDD~pyGGG~GMvm~~ePi~~al~~~~~~~- 98 (189) T 1ual_A 20 HMWIGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGMLMMVQPLRDAIHTAKAAA- 98 (189) T ss_dssp CEEEEEECSCGGGGHHHHSSHHHHHHHHTTSEEEEEECGGGGCCSTTCCCEECCTTCCSCCEECHHHHHHHHHHHHHHH- T ss_pred CCEEEEEEECHHHHHHHHHCCHHHHHHHCCCEEEEEECHHHHCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHHHC- T ss_conf 7889999988564011222348999998797689988826608898866467857899863152256788999987404- Q ss_pred CCCCCEEEECCCCCEECHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCEEEHHEEECCCCHHHHHHHHHHHHHHCC Q ss_conf 77830899879987604899999730287599941501144899974045310033401117327799999999985057 Q gi|254780714|r 82 HEDIPRILMSPRGKTLTQKRVRQLSQKLGVIIVCGRFEGIDERIIEARDLEEISVGDYILSGGEPAALILLDAVVRLLPG 161 (236) Q Consensus 82 ~~~~~vI~lSP~Gk~l~Q~~a~~ls~~~~liliCGrYEGiDeRvid~~~d~eiSiGDyVLsGGEl~a~v~~dai~RlipG 161 (236) .++++||||||||++|||++|++||++++|+|||||||||||||+|+++|+|||||||||||||+||||++|||+||+|| T Consensus 99 ~~~~~vi~lsP~G~~f~Q~~a~~La~~~~liliCGrYEGiDeRv~~~~vd~EiSIGDyVLtGGElaAmviiDav~RliPG 178 (189) T 1ual_A 99 GEGAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDERLIQTEIDEEWSIGDYVLTGGELPAMTLIDAVARFIPG 178 (189) T ss_dssp CTTCEEEEEEEEEEECCHHHHHHHTTCSEEEEECCCTTCCCHHHHHHHCSEEEESSSSCCSCSHHHHHHHHHHHHTTSTT T ss_pred CCCCCEEECCCCCHHHHHHHHHHHCCCCCEEEEECCEEHHHHHHHHHHCCEEEECCCEEEECCCHHHHHHHHHHHHHHCC T ss_conf 88984662476515550799997513563899965554076688875312363421488736645665568999988447 Q ss_pred CCCCCCCCCCC Q ss_conf 46782223344 Q gi|254780714|r 162 VLGNQQSTIHE 172 (236) Q Consensus 162 vlg~~~S~~~e 172 (236) ||||++|+++| T Consensus 179 VLg~~~S~~~e 189 (189) T 1ual_A 179 VLGKQASAEED 189 (189) T ss_dssp CC--------- T ss_pred CCCCCCCCCCC T ss_conf 46773222102 |
>3ky7_A (A:1-192) TRNA (guanine-N(1)-)-methyltransferase; putative tRNA (guanine-7-)-methyltransferase, structural genomics, infectious diseases; 2.35A {Staphylococcus aureus subsp} | Back alignment and structure |
---|
>3knu_A (A:1-188) TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid, seattle structural genomics center for infectious disease; 2.25A {Anaplasma phagocytophilum HZ} | Back alignment and structure |
---|
>3ief_A (A:1-168) TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid, seattle structural genomics center for infectious diseases; 2.50A {Bartonella henselae} | Back alignment and structure |
---|
>1oy5_A (A:1-171) TRNA (guanine-N(1)-)-methyltransferase; structural genomics, TRMD, tRNA (M1G37) methyltransferase, BSGC structure funded by NIH; 2.60A {Aquifex aeolicus} | Back alignment and structure |
---|
>1o6d_A (A:) Hypothetical UPF0247 protein TM0844; structural genomics, unknown function; 1.66A {Thermotoga maritima} | Back alignment and structure |
---|
>1vh0_A (A:) Hypothetical UPF0247 protein SAV0024/SA0023; structural genomics, unknown function; 2.31A {Staphylococcus aureus} | Back alignment and structure |
---|
>1ual_A (A:190-274) TRNA (guanine-N(1)-)-methyltransferase; spout class, TRMD, tRNA(M1G37) methyltransferase, tRNA modification; HET: SAH; 1.80A {Haemophilus influenzae} | Back alignment and structure |
---|
>3ief_A (A:169-233) TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid, seattle structural genomics center for infectious diseases; 2.50A {Bartonella henselae} | Back alignment and structure |
---|
>3knu_A (A:189-253) TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid, seattle structural genomics center for infectious disease; 2.25A {Anaplasma phagocytophilum HZ} | Back alignment and structure |
---|
>1oy5_A (A:172-221) TRNA (guanine-N(1)-)-methyltransferase; structural genomics, TRMD, tRNA (M1G37) methyltransferase, BSGC structure funded by NIH; 2.60A {Aquifex aeolicus} | Back alignment and structure |
---|
>3ky7_A (A:219-269) TRNA (guanine-N(1)-)-methyltransferase; putative tRNA (guanine-7-)-methyltransferase, structural genomics, infectious diseases; 2.35A {Staphylococcus aureus subsp} | Back alignment and structure |
---|
>2v3j_A (A:) Essential for mitotic growth 1; EMG1, rRNA processing, nuclear protein, ribonucleoprotein, ribosome biogenesis; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
---|
>1to0_A (A:) Hypothetical UPF0247 protein YYDA; structural genomics, unknown function, PSI, protein structure initiative; 2.50A {Bacillus subtilis} | Back alignment and structure |
---|
>1ns5_A (A:) Hypothetical protein YBEA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.68A {Escherichia coli} | Back alignment and structure |
---|