254780715

254780715

50S ribosomal protein L19

GeneID in NCBI database:8209720Locus tag:CLIBASIA_03010
Protein GI in NCBI database:254780715Protein Accession:YP_003065128.1
Gene range:-(551191, 551616)Protein Length:141aa
Gene description:50S ribosomal protein L19
COG prediction:[J] Ribosomal protein L19
KEGG prediction:rplS; 50S ribosomal protein L19; K02884 large subunit ribosomal protein L19
SEED prediction:LSU ribosomal protein L19p
Pathway involved in KEGG:Ribosome [PATH:las03010]
Subsystem involved in SEED:Ribosome LSU bacterial
sequencesequence profile

Prediction of Local Sequence Properties

SourceSummaryResult
scaler
NCBI Databasesequence
PSIPREDsecondary structure
SSPROsecondary structure
DISEMBLcoil and loop
DISEMBLflexible loop
SEGlow complexity
DISOPREDdisordered
DISEMBLmissing residues
DISPROdisordered
TMHMMnone TM-Helix
TOPPREDnone TM-Helix
HMMTOP1 TM-Helix
MEMSATnone TM-Helix
MEMSAT_SVMnone TM-Helix
PHOBIUSnone TM-Helix
SignalP_HMMno
SignalP_NNno
COILScoiled coil
70% MSAconservation map
90% MSAconservation map
  
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-
MNIIDELDHEEMVRIESKRSLPKFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGINKNFTVRKISYGEGMNRLFPLYSPMIQDITVIRRGKVRRSKLYYLQDLRGKAARIKENTGKRAKALNEEVRRAALPEKEMSK
ccHHHHHHHHHHHHHHHcccccccccccEEEEEEEEEccccEEEEEEEEEEEEEcccccccEEEEEEEcccccEEEEEEcccccEEEEEEEEEcHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHcccHHHHcc
ccHHHHHHHHHHHHHHHcccccccccccEEEEEEEEEEccccEEEEEcEEEEEEccccccccEEEEEEEccccEEEEEcccccccccEEEEEccHHHHHHHHHHHHcccccHHHHHHccccHHHHHHHHHHHHHHHcHHcc
mniideldHEEMVRIeskrslpkfspgdtlcVKTIITEGDKSRIQAYEGVCIarsgrginknftvrkisygegmnrlfplyspmiqditvirrgkvrrsKLYYLQDLRGKAARIKENTGKRAKALNEEVRRaalpekemsk
mniideldheemvrieskrslpkfspgdtLCVKTiitegdksriQAYEGVciarsgrginknfTVRKISYGEGMNRLFPLYSPMIqditvirrgkvrrsklyylqdlrgkaarikentgkrakalneevrraalpekemsk
MNIIDELDHEEMVRIESKRSLPKFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGINKNFTVRKISYGEGMNRLFPLYSPMIQDITVIRRGKVRRSKLYYLQDLRGKAARIKENTGKRAKALNEEVRRAALPEKEMSK
MNIIDELDHEEMV**E*KRSLPKFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGINKNFTVRKISYGEGMNRLFPLYSPMIQDITVIRRGKVRRSKLYYLQDLRGKAA*****************************
MNIIDELDHEEMVRIESKRSLPKFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGINKNFTVRKISYGEGMNRLFPLYSPMIQDITVIRRGKVRRSKLYYLQDLRGKAARIKENTGKRAKALNEEVRRA*********
MNIIDELDHEEMVRIESKRSLPKFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGINKNFTVRKISYGEGMNRLFPLYSPMIQDITVIRRGKVRRSKLYYLQDLRGKAAR*K*****RAKALNEEVRRAA********
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MNIIDELDHEEMVRIESKRSLPKFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGINKNFTVRKISYGEGMNRLFPLYSPMIQDITVIRRGKVRRSKLYYLQDLRGKAARIKENTGKRAKALNEEVRRAALPEKEMSK
MNIIDELDHEEMVRIESKRSLPKFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGINKNFTVRKISYGEGMNRLFPLYSPMIQDITVIRRGKVRRSKLYYLQDLRGKAARIKENTGKRAKALNEEVRRAALPEKEMSK
MNIIDELDHEEMVRIESKRSLPKFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGINKNFTVRKISYGEGMNRLFPLYSPMIQDITVIRRGKVRRSKLYYLQDLRGKAARIKENTGKRAKALNEEVRRAALPEKEMSK

Close Homologs Detected by BLAST or PSI-BLAST

Homolog within the Genome Detected by BLAST

No hits with e-value below 0.05

Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations

IdentityAlignment graphLength Definition Round E-value
Target141 50S ribosomal protein L19 [Candidatus Liberibacter asia
315121880137 50S ribosomal protein L19 [Candidatus Liberibacter sola 1 2e-64
222087538184 ribosomal protein L19 [Agrobacterium radiobacter K84] L 1 2e-48
15889957179 50S ribosomal protein L19 [Agrobacterium tumefaciens st 1 2e-47
118591418156 50S ribosomal protein L19 [Stappia aggregata IAM 12614] 1 7e-47
325294074179 50S ribosomal protein L19 [Agrobacterium sp. H13-3] Len 1 7e-47
86359542178 50S ribosomal protein L19 [Rhizobium etli CFN 42] Lengt 1 1e-46
222150106180 50S ribosomal protein L19 [Agrobacterium vitis S4] Leng 1 2e-46
209551326183 50S ribosomal protein L19 [Rhizobium leguminosarum bv. 1 2e-46
15966999177 50S ribosomal protein L19 [Sinorhizobium meliloti 1021] 1 2e-46
304392664173 50S ribosomal protein L19 [Ahrensia sp. R2A130] Length 1 2e-46
>gi|315121880|ref|YP_004062369.1| 50S ribosomal protein L19 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 137 Back     alignment and organism information
 Score =  248 bits (633), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 118/137 (86%), Positives = 129/137 (94%)

Query: 1   MNIIDELDHEEMVRIESKRSLPKFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGIN 60
           MNIIDELDHEEM RIES R LP+FSPGDT+ VKTIITEG+KSRIQ+YEG+CIARSGRGIN
Sbjct: 1   MNIIDELDHEEMARIESMRMLPEFSPGDTIAVKTIITEGEKSRIQSYEGICIARSGRGIN 60

Query: 61  KNFTVRKISYGEGMNRLFPLYSPMIQDITVIRRGKVRRSKLYYLQDLRGKAARIKENTGK 120
           KNFTVRKISYGEG+NRLFPLYSPMIQDITVIRRGKVRRSKLYYLQDLRGKAARI ENTGK
Sbjct: 61  KNFTVRKISYGEGINRLFPLYSPMIQDITVIRRGKVRRSKLYYLQDLRGKAARITENTGK 120

Query: 121 RAKALNEEVRRAALPEK 137
           RAKALNE+ R++  P++
Sbjct: 121 RAKALNEKARKSMAPKR 137


Species: Candidatus Liberibacter solanacearum
Genus: Candidatus Liberibacter
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria
>gi|222087538|ref|YP_002546075.1| ribosomal protein L19 [Agrobacterium radiobacter K84] Length = 184 Back     alignment and organism information
>gi|15889957|ref|NP_355638.1| 50S ribosomal protein L19 [Agrobacterium tumefaciens str. C58] Length = 179 Back     alignment and organism information
>gi|118591418|ref|ZP_01548816.1| 50S ribosomal protein L19 [Stappia aggregata IAM 12614] Length = 156 Back     alignment and organism information
>gi|325294074|ref|YP_004279938.1| 50S ribosomal protein L19 [Agrobacterium sp. H13-3] Length = 179 Back     alignment and organism information
>gi|86359542|ref|YP_471434.1| 50S ribosomal protein L19 [Rhizobium etli CFN 42] Length = 178 Back     alignment and organism information
>gi|222150106|ref|YP_002551063.1| 50S ribosomal protein L19 [Agrobacterium vitis S4] Length = 180 Back     alignment and organism information
>gi|209551326|ref|YP_002283243.1| 50S ribosomal protein L19 [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 183 Back     alignment and organism information
>gi|15966999|ref|NP_387352.1| 50S ribosomal protein L19 [Sinorhizobium meliloti 1021] Length = 177 Back     alignment and organism information
>gi|304392664|ref|ZP_07374604.1| 50S ribosomal protein L19 [Ahrensia sp. R2A130] Length = 173 Back     alignment and organism information

Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch

Conserved Domains in CDD Database Detected by RPS-BLAST

IdentityAlignment graphLength Definition E-value
Target141 50S ribosomal protein L19 [Candidatus Liberibacter asia
PRK05338116 PRK05338, rplS, 50S ribosomal protein L19; Provisional 1e-46
TIGR01024113 TIGR01024, rplS_bact, ribosomal protein L19, bacterial 4e-36
COG0335115 COG0335, RplS, Ribosomal protein L19 [Translation, ribo 9e-35
CHL00084117 CHL00084, rpl19, ribosomal protein L19 2e-30
KOG1698201 KOG1698, KOG1698, KOG1698, Mitochondrial/chloroplast ri 1e-16
pfam01245113 pfam01245, Ribosomal_L19, Ribosomal protein L19 6e-43
>gnl|CDD|180025 PRK05338, rplS, 50S ribosomal protein L19; Provisional Back     alignment and domain information
>gnl|CDD|130096 TIGR01024, rplS_bact, ribosomal protein L19, bacterial type Back     alignment and domain information
>gnl|CDD|30683 COG0335, RplS, Ribosomal protein L19 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|177023 CHL00084, rpl19, ribosomal protein L19 Back     alignment and domain information
>gnl|CDD|36911 KOG1698, KOG1698, KOG1698, Mitochondrial/chloroplast ribosomal protein L19 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|144730 pfam01245, Ribosomal_L19, Ribosomal protein L19 Back     alignment and domain information

Conserved Domains in CDD Database Detected by HHsearch

IdentityAlignment graphLength Definition Probability
Target 141 50S ribosomal protein L19 [Candidatus Liberibacter asia
PRK05338112 rplS 50S ribosomal protein L19; Provisional 100.0
CHL00084117 rpl19 ribosomal protein L19 100.0
pfam01245113 Ribosomal_L19 Ribosomal protein L19. 100.0
COG0335115 RplS Ribosomal protein L19 [Translation, ribosomal stru 100.0
KOG1698201 consensus 100.0
TIGR01024116 rplS_bact ribosomal protein L19; InterPro: IPR001857 Ri 99.93
>PRK05338 rplS 50S ribosomal protein L19; Provisional Back     alignment and domain information
>CHL00084 rpl19 ribosomal protein L19 Back     alignment and domain information
>pfam01245 Ribosomal_L19 Ribosomal protein L19 Back     alignment and domain information
>COG0335 RplS Ribosomal protein L19 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1698 consensus Back     alignment and domain information
>TIGR01024 rplS_bact ribosomal protein L19; InterPro: IPR001857 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information

Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch

Homologous Structures Detected by PSI-BLAST against Nonredundant Database

IdentityAlignment graphLength Definition E-value
Target141 50S ribosomal protein L19 [Candidatus Liberibacter asia
1p85_N114 Real Space Refined Coordinates Of The 50s Subunit F 4e-27
1vs6_P115 Crystal Structure Of The Bacterial Ribosome From Es 5e-27
1nkw_N166 Crystal Structure Of The Large Ribosomal Subunit Fr 3e-24
1pnu_N125 Crystal Structure Of A Streptomycin Dependent Ribos 2e-23
1vsa_N146 Crystal Structure Of A 70s Ribosome-Trna Complex Re 2e-21
3pyo_P137 Crystal Structure Of A Complex Containing Domain 3 8e-21
3fin_T138 T. Thermophilus 70s Ribosome In Complex With Mrna, 8e-21
2j01_T146 Structure Of The Thermus Thermophilus 70s Ribosome 1e-20
3bbo_R233 Homology Model For The Spinach Chloroplast 50s Subu 3e-17
2ftc_K98 Structural Model For The Large Subunit Of The Mamma 1e-13
>gi|33357915|pdb|1P85|N Chain N, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 114 Back     alignment and structure
 Score =  124 bits (311), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 62/118 (52%), Positives = 83/118 (70%), Gaps = 5/118 (4%)

Query: 2   NIIDELDHEEMVRIESKRSLPKFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGINK 61
           NII +L+ E+M     K+ +P F PGDT+ VK  + EG K R+QA+EGV IA   RG++ 
Sbjct: 2   NIIKQLEQEQM-----KQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHS 56

Query: 62  NFTVRKISYGEGMNRLFPLYSPMIQDITVIRRGKVRRSKLYYLQDLRGKAARIKENTG 119
            FTVRKIS GEG+ R+F  +SP++  I+V RRG VR++KLYYL++  GKAARIKE   
Sbjct: 57  AFTVRKISNGEGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLRERTGKAARIKERLN 114


gi|116666585|pdb|1VS6|P Chain P, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 115 Back     alignment and structure
gi|28948933|pdb|1NKW|N Chain N, Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans Length = 166 Back     alignment and structure
>gi|34811567|pdb|1PNU|N Chain N, Crystal Structure Of A Streptomycin Dependent Ribosome From Escherichia Coli, 50s Subunit Of 70s Ribosome. This File, 1pnu, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site Trna Are In The Pdb File 1pns. Length = 125 Back     alignment and structure
gi|149240899|pdb|1VSA|N Chain N, Crystal Structure Of A 70s Ribosome-Trna Complex Reveals Functional Interactions And Rearrangements. This File, 1vsa, Contains The 50s Ribosome Subunit. 30s Ribosome Subunit Is In The File 2ow8 Length = 146 Back     alignment and structure
>gi|322812587|pdb|3PYO|P Chain P, Crystal Structure Of A Complex Containing Domain 3 From The Psiv Igr Ires Rna Bound To The 70s Ribosome. This File Contains The 50s Subunit Of The First 70s Ribosome. Length = 137 Back     alignment and structure
>gi|224510795|pdb|3FIN|T Chain T, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef-Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 50s Subunit Length = 138 Back     alignment and structure
gi|116668251|pdb|2J01|T Chain T, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4). This File Contains The 50s Subunit From Molecule I. Length = 146 Back     alignment and structure
gi|189096140|pdb|3BBO|R Chain R, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 233 Back     alignment and structure
>gi|99032317|pdb|2FTC|K Chain K, Structural Model For The Large Subunit Of The Mammalian Mitochondrial Ribosome Length = 98 Back     alignment and structure

Homologous Structures in PDB70 Database Detected by RPS-BLAST

IdentityAlignment graphLength Definition E-value
Target141 50S ribosomal protein L19 [Candidatus Liberibacter asia
3bbo_R233 Ribosomal protein L19; large ribosomal subunit, spinach 7e-38
3ofq_P114 50S ribosomal protein L19; protein biosynthesis, riboso 4e-34
3i1n_P115 50S ribosomal protein L19; ribosome structure, protein- 6e-33
2j01_T146 50S ribosomal protein L19; ribosome, tRNA, paromomycin, 2e-27
2zjr_M166 50S ribosomal protein L19; ribosome, large ribosomal su 4e-27
2ftc_K98 39S ribosomal protein L19, mitochondrial; mitochondrial 4e-26
>3bbo_R Ribosomal protein L19; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 233 Back     alignment and structure
 Score =  151 bits (382), Expect = 7e-38
 Identities = 38/115 (33%), Positives = 66/115 (57%), Gaps = 1/115 (0%)

Query: 1   MNIIDELDHEEMVRIESKRSLPKFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGIN 60
            +I+  L+ + +   E  R +P    GD + ++  + E  K R+  Y+G+ I+R   GI+
Sbjct: 120 GDIMGILNKKAVHAAEELRPVPGIRTGDIVQIRLEVPEN-KRRLSVYKGIVISRQNAGIH 178

Query: 61  KNFTVRKISYGEGMNRLFPLYSPMIQDITVIRRGKVRRSKLYYLQDLRGKAARIK 115
               +R+I  G G+  +FPLYSP I++I V+   KVR+++LYYL+D   + +  K
Sbjct: 179 TTIRIRRIIAGVGVEIVFPLYSPNIKEIKVVSHRKVRKARLYYLRDKLPRLSTFK 233


>3ofq_P 50S ribosomal protein L19; protein biosynthesis, ribosomes, RNA, tRNA, transfer, antibi EXIT, peptidyl, ribosomal subunit, large; 3.10A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ... Length = 114 Back     alignment and structure
>3i1n_P 50S ribosomal protein L19; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1vs8_P 3e1b_I 3e1d_I 1vs6_P 3i1p_P 3i1r_P 3i1t_P 3i20_P 3i22_P 2qam_P* 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* ... Length = 115 Back     alignment and structure
>2j01_T 50S ribosomal protein L19; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} SCOP: b.34.5.6 PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 3hux_T 3huz_T 3f1f_T 1vsp_N 1vsa_N 3d5d_T ... Length = 146 Back     alignment and structure
>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N* 1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q Length = 166 Back     alignment and structure
>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus} Length = 98 Back     alignment and structure

Homologous Structures in PDB70 Database Detected by HHsearch

IdentityAlignment graphLength Definition Probability
Target141 50S ribosomal protein L19 [Candidatus Liberibacter asia
2zjr_M166 50S ribosomal protein L19; ribosome, large ribosomal su 100.0
2j01_T146 50S ribosomal protein L19; ribosome, tRNA, paromomycin, 100.0
3ofq_P114 50S ribosomal protein L19; protein biosynthesis, riboso 100.0
3bbo_R233 Ribosomal protein L19; large ribosomal subunit, spinach 100.0
2ftc_K98 39S ribosomal protein L19, mitochondrial; mitochondrial 100.0
>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N* 1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q Back     alignment and structure
Probab=100.00  E-value=1.4e-45  Score=307.85  Aligned_cols=116  Identities=52%  Similarity=0.955  Sum_probs=107.1

Q ss_pred             CHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCCEEEEECC
Q ss_conf             35899979999997602798973789989999998358877401234535431366664338863003561302899910
Q gi|254780715|r    2 NIIDELDHEEMVRIESKRSLPKFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGINKNFTVRKISYGEGMNRLFPLY   81 (141)
Q Consensus         2 nli~~le~~~~~~~~~k~~~P~f~~GD~v~V~~~i~eg~k~R~Q~F~GvvI~~~~~G~~stftvRki~~g~GVE~~fpl~   81 (141)
                      ++|+.+|++++      +++|+|+|||||+|+++|.||+|+|+|.|+|+||+++++|+++||||||+++|+|||++||||
T Consensus        11 ~li~~ie~~~~------k~iP~f~~GDtv~V~~~i~Eg~k~RiQ~FeGvvIa~~~~g~~stftvRki~~G~GVEr~fpl~   84 (166)
T 2zjr_M           11 ELLRGIEQDHT------RQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVRKISFGEGVERVFPFA   84 (166)
T ss_dssp             HHHHHTTGGGC------CCCCCCSSSEEEEEECCTTSSSCCCCEEEECCEEECCCCGGGCEEEEEEEETTEEEEEEEETT
T ss_pred             HHHHHHHHHHC------CCCCCCCCCCEEEEEEEECCCCCEEEEEEEEEEEEEECCCCCCEEEEEEEECCCCEEEEEEEC
T ss_conf             99999999847------789984899899999997268840513677999998279987538868885485369998716


Q ss_pred             CCCEEEEEEEECCHHHHHHHHHHCCCCCCEEEHHHHCCCCCC
Q ss_conf             786101222000204678768750888410220120012123
Q gi|254780715|r   82 SPMIQDITVIRRGKVRRSKLYYLQDLRGKAARIKENTGKRAK  123 (141)
Q Consensus        82 SP~i~~Iev~r~gkvRrakLyYLR~~~gk~arik~~~~~~~~  123 (141)
                      ||+|++|+|+++|+|||||||||||+.||+|||+++......
T Consensus        85 SP~I~~IeVvr~gkvRRAKLYYLR~~~GK~aRike~~~~~~~  126 (166)
T 2zjr_M           85 SPLVNQVTIVERGKVRRAKLYYLRELRGKAARIKSDRSRVMK  126 (166)
T ss_dssp             CTTEEEEEEEECCCCSSSCCGGGCC-----------------
T ss_pred             CCCCCEEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHHCC
T ss_conf             987425889870541456667663372267777787752211



>2j01_T 50S ribosomal protein L19; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} SCOP: b.34.5.6 PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ... Back     alignment and structure
>3ofq_P 50S ribosomal protein L19; protein biosynthesis, ribosomes, RNA, tRNA, transfer, antibi EXIT, peptidyl, ribosomal subunit, large; 3.10A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ... Back     alignment and structure
>3bbo_R Ribosomal protein L19; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Back     alignment and structure
>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus} Back     alignment and structure

Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch

Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST

IdentityAlignment graphLength Definition E-value
Target 141 50S ribosomal protein L19 [Candidatus Liberibacter asia
d2gycn1114 b.34.5.6 (N:1-114) Ribosomal protein L19 {Escherichia c 3e-33
d2j01t1138 b.34.5.6 (T:1-138) Ribosomal protein L19 {Thermus therm 2e-30
d2zjrm1108 b.34.5.6 (M:2-109) Ribosomal protein L19 {Deinococcus r 7e-28
>d2gycn1 b.34.5.6 (N:1-114) Ribosomal protein L19 {Escherichia coli [TaxId: 562]} Length = 114 Back     information, alignment and structure

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L19
domain: Ribosomal protein L19
species: Escherichia coli [TaxId: 562]
 Score =  134 bits (338), Expect = 3e-33
 Identities = 62/115 (53%), Positives = 83/115 (72%), Gaps = 5/115 (4%)

Query: 2   NIIDELDHEEMVRIESKRSLPKFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGINK 61
           NII +L+ E+M     K+ +P F PGDT+ VK  + EG K R+QA+EGV IA   RG++ 
Sbjct: 2   NIIKQLEQEQM-----KQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHS 56

Query: 62  NFTVRKISYGEGMNRLFPLYSPMIQDITVIRRGKVRRSKLYYLQDLRGKAARIKE 116
            FTVRKIS GEG+ R+F  +SP++  I+V RRG VR++KLYYL++  GKAARIKE
Sbjct: 57  AFTVRKISNGEGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLRERTGKAARIKE 111


>d2j01t1 b.34.5.6 (T:1-138) Ribosomal protein L19 {Thermus thermophilus [TaxId: 274]} Length = 138 Back     information, alignment and structure
>d2zjrm1 b.34.5.6 (M:2-109) Ribosomal protein L19 {Deinococcus radiodurans [TaxId: 1299]} Length = 108 Back     information, alignment and structure

Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch

IdentityAlignment graphLength Definition Probability
Target141 50S ribosomal protein L19 [Candidatus Liberibacter asia
d2j01t1138 Ribosomal protein L19 {Thermus thermophilus [TaxId: 274 100.0
d2gycn1114 Ribosomal protein L19 {Escherichia coli [TaxId: 562]} 100.0
d2zjrm1108 Ribosomal protein L19 {Deinococcus radiodurans [TaxId: 100.0
d1zq1a174 Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD {Py 90.17
>d2j01t1 b.34.5.6 (T:1-138) Ribosomal protein L19 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L19
domain: Ribosomal protein L19
species: Thermus thermophilus [TaxId: 274]
Probab=100.00  E-value=1.4e-45  Score=305.87  Aligned_cols=119  Identities=41%  Similarity=0.789  Sum_probs=111.1

Q ss_pred             CCH---HHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCCEEE
Q ss_conf             935---89997999999760279897378998999999835887740123453543136666433886300356130289
Q gi|254780715|r    1 MNI---IDELDHEEMVRIESKRSLPKFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGINKNFTVRKISYGEGMNRL   77 (141)
Q Consensus         1 Mnl---i~~le~~~~~~~~~k~~~P~f~~GD~v~V~~~i~eg~k~R~Q~F~GvvI~~~~~G~~stftvRki~~g~GVE~~   77 (141)
                      ||.   |+.+|++++     +.++|+|++||||+|+++|.||+|+|+|.|+|+||+++++|+++||||||+++|+|||++
T Consensus         1 mn~~~Li~~iE~~~~-----k~~iP~fr~GDtV~V~~~i~Eg~k~RiQ~f~GvvI~~~~~g~~~tftvRki~~gvGVEr~   75 (138)
T d2j01t1           1 MNRGALIKLVESRYV-----RTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYGVGVERI   75 (138)
T ss_dssp             CTTHHHHHHHHCCCC-----CSCSCCCCSSCBBCCCCCCBTTBSCCCCCCBCEEEEEECCSSSCEEEEEEEETTEEEEEE
T ss_pred             CCHHHHHHHHHHHHH-----CCCCCCCCCCCEEEEEEEECCCCCEEEEEEEEEEEEEECCCCCEEEEEEEEECCCCEEEE
T ss_conf             988999999999860-----145998389989999999758883578888899998717885307998898558448999


Q ss_pred             EECCCCCEEEEEEEECCHHHHHHHHHHCCCCCCEEEHHHHCCCCCCC
Q ss_conf             99107861012220002046787687508884102201200121236
Q gi|254780715|r   78 FPLYSPMIQDITVIRRGKVRRSKLYYLQDLRGKAARIKENTGKRAKA  124 (141)
Q Consensus        78 fpl~SP~i~~Iev~r~gkvRrakLyYLR~~~gk~arik~~~~~~~~~  124 (141)
                      ||||||+|++|+|+++|+|||||||||||+.||+|||+++.......
T Consensus        76 fpl~SP~I~~IeVvr~gkvRRAKLyYLR~~~gk~arike~~~~~~~~  122 (138)
T d2j01t1          76 FPLHSPLIQKIDIVQRGRARRAKLYFIRNLSDREIRRKLRADRKRID  122 (138)
T ss_dssp             ECSSSSCSCCCBCCCCBCCSSSSCGGGSSSCSSSHHHHSBCCHHHHH
T ss_pred             EECCCCCCCCEEEEECCCEEHHHEEEHHHCCCHHHHHHHHHCCCCCC
T ss_conf             86359986640776327153211341120513566554540022233



>d2gycn1 b.34.5.6 (N:1-114) Ribosomal protein L19 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2zjrm1 b.34.5.6 (M:2-109) Ribosomal protein L19 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1zq1a1 b.38.3.1 (A:2-75) Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure

Homologous Domains in MMDB70 Database Detected by RPS-BLAST

IdentityAlignment graphLength Definition E-value
Target 141 50S ribosomal protein L19 [Candidatus Liberibacter
2zjr_M_24-166143 (M:24-166) 50S ribosomal protein L19; ribosome, la 4e-36
3i1n_P_115 (P:) 50S ribosomal protein L19; ribosome structure 1e-35
2ftc_K_98 (K:) 39S ribosomal protein L19, mitochondrial; mit 1e-32
3bbo_R_143-23391 (R:143-233) Ribosomal protein L19; large ribosomal 5e-31
2j01_T_19-9880 (T:19-98) 50S ribosomal protein L19; ribosome, tRN 1e-27
>2zjr_M (M:24-166) 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans}Length = 143 Back     alignment and structure
 Score =  144 bits (365), Expect = 4e-36
 Identities = 60/121 (49%), Positives = 83/121 (68%)

Query: 21  LPKFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGINKNFTVRKISYGEGMNRLFPL 80
           LP F PGDT+ V T + EG+++R QA+EGV IA +G G  K+FTVRKIS+GEG+ R+FP 
Sbjct: 1   LPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVRKISFGEGVERVFPF 60

Query: 81  YSPMIQDITVIRRGKVRRSKLYYLQDLRGKAARIKENTGKRAKALNEEVRRAALPEKEMS 140
            SP++  +T++ RGKVRR+KLYYL++LRGKAARIK +  +  K      +  A      +
Sbjct: 61  ASPLVNQVTIVERGKVRRAKLYYLRELRGKAARIKSDRSRVMKDAARAQQDKANASASQA 120

Query: 141 K 141
            
Sbjct: 121 A 121


>3i1n_P (P:) 50S ribosomal protein L19; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1vs8_P 3e1b_I 3e1d_I 1vs6_P 3i1p_P 3i1r_P 3i1t_P 3i20_P 3i22_P 2qam_P* 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* ...Length = 115 Back     alignment and structure
>2ftc_K (K:) 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus}Length = 98 Back     alignment and structure
>3bbo_R (R:143-233) Ribosomal protein L19; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}Length = 91 Back     alignment and structure
>2j01_T (T:19-98) 50S ribosomal protein L19; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus}Length = 80 Back     alignment and structure

Homologous Domains in MMDB70 Database Detected by HHsearch

IdentityAlignment graphLength Definition Probability
Target141 50S ribosomal protein L19 [Candidatus Liberibacter asia
3i1n_P_115 50S ribosomal protein L19; ribosome structure, pro 100.0
2zjr_M_24-166143 50S ribosomal protein L19; ribosome, large ribosom 100.0
2ftc_K_98 39S ribosomal protein L19, mitochondrial; mitochon 100.0
3bbo_R_143-23391 Ribosomal protein L19; large ribosomal subunit, sp 100.0
2j01_T_19-9880 50S ribosomal protein L19; ribosome, tRNA, paromom 99.96
>3i1n_P (P:) 50S ribosomal protein L19; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1vs8_P 3e1b_I 3e1d_I 1vs6_P 3i1p_P 3i1r_P 3i1t_P 3i20_P 3i22_P 2qam_P* 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* ... Back     alignment and structure
Probab=100.00  E-value=2e-43  Score=294.25  Aligned_cols=113  Identities=55%  Similarity=0.905  Sum_probs=109.6

Q ss_pred             CCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCCCCCCEEEEEEECCCCCCEEEEEC
Q ss_conf             93589997999999760279897378998999999835887740123453543136666433886300356130289991
Q gi|254780715|r    1 MNIIDELDHEEMVRIESKRSLPKFSPGDTLCVKTIITEGDKSRIQAYEGVCIARSGRGINKNFTVRKISYGEGMNRLFPL   80 (141)
Q Consensus         1 Mnli~~le~~~~~~~~~k~~~P~f~~GD~v~V~~~i~eg~k~R~Q~F~GvvI~~~~~G~~stftvRki~~g~GVE~~fpl   80 (141)
                      +|+|+.+|++++     +.++|+|+|||||+|++++.||+|+|+|.|+|+||+++++|+++||||||+++|+|||++||+
T Consensus         2 ~~Li~~ie~~~~-----k~~~p~f~~GD~v~V~~~i~e~~k~r~q~f~GvvI~~~~~g~~~tftlR~i~~gvGVE~~fpl   76 (115)
T 3i1n_P            2 SNIIKQLEQEQM-----KQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQT   76 (115)
T ss_dssp             CCTTTHHHHTTC-----CSCCCCCCTTCCCEEEEEEECSSCEEEEEEECEEEEECCCGGGCCEEEECCBTTBCEEEEECT
T ss_pred             HHHHHHHHHHHH-----HCCCCCCCCCCEEEEEEEECCCCCEEEEEEEEEEEEEECCCCCEEEEEEEECCCCCEEEEEEC
T ss_conf             589999999984-----056998499989999999846885158899999999968984037988996377567999981


Q ss_pred             CCCCEEEEEEEECCHHHHHHHHHHCCCCCCEEEHHHHC
Q ss_conf             07861012220002046787687508884102201200
Q gi|254780715|r   81 YSPMIQDITVIRRGKVRRSKLYYLQDLRGKAARIKENT  118 (141)
Q Consensus        81 ~SP~i~~Iev~r~gkvRrakLyYLR~~~gk~arik~~~  118 (141)
                      |||+|++|+|+++|||||||||||||+.||+|||||+.
T Consensus        77 ~SP~I~~IeV~~~~kvRRaKLyYLR~~~gk~arike~~  114 (115)
T 3i1n_P           77 HSPVVDSISVKRRGAVRKAKLYYLRERTGKAARIKERL  114 (115)
T ss_dssp             TCTTTCEEECCSCBCCSCSCCGGGGGTCSGGGCCCBCC
T ss_pred             CCCCCCCEEEECCCCEEEEEEEEECCCCCHHHHHHHHC
T ss_conf             79982202443158152100555204722677644521



>2zjr_M (M:24-166) 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} Back     alignment and structure
>2ftc_K (K:) 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus} Back     alignment and structure
>3bbo_R (R:143-233) Ribosomal protein L19; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Back     alignment and structure
>2j01_T (T:19-98) 50S ribosomal protein L19; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} Back     alignment and structure