254780717
zinc uptake ABC transporter
GeneID in NCBI database: | 8209722 | Locus tag: | CLIBASIA_03020 |
Protein GI in NCBI database: | 254780717 | Protein Accession: | YP_003065130.1 |
Gene range: | +(548673, 549557) | Protein Length: | 294aa |
Gene description: | zinc uptake ABC transporter | ||
COG prediction: | [P] ABC-type Zn2+ transport system, periplasmic component/surface adhesin | ||
KEGG prediction: | znuA; zinc uptake ABC transporter; K09815 zinc transport system substrate-binding protein | ||
SEED prediction: | Zinc ABC transporter, periplasmic-binding protein ZnuA | ||
Pathway involved in KEGG: | ABC transporters [PATH:las02010] | ||
Subsystem involved in SEED: | - none - | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
Identity | Alignment graph | Length | Definition | E-value | |
Target | 294 | zinc uptake ABC transporter [Candidatus Liberibacter as | |||
254780537 | 294 | periplasmic solute binding protein [Candidatus Lib | 5e-12 |
>gi|254780537|ref|YP_003064950.1| periplasmic solute binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 294 | Back alignment |
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Score = 63.2 bits (152), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 64/288 (22%), Positives = 126/288 (43%), Gaps = 10/288 (3%) Query: 1 MKNFLIILIFLFFILSSVARAGSLQVVVSIKPIHSIVSCIMQGIGTPALLVKGASSPHEY 60 M + I L+F + +S+ A V+ S I I I + + T LV+ + H Y Sbjct: 1 MLRYFICLLFSYIPMSASATTQKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSY 60 Query: 61 SLRISEAMMLENADIIFWLGAEMESFLVKPLHSLNKQSNVVTLSHSPDLHRILLRDNHSH 120 + ++A+ ++NAD+I G +E +K +L K + ++T++ ++ I + ++ S Sbjct: 61 QVTSADAIKIQNADLILCNGLHLEETYMKYFTNLKKGTKIITVTDG--INPIGVSEDTS- 117 Query: 121 FHDSEADDLHLWLNPLNVQYIAHVIAMELIKKDPRNKIIYEKNEEEFKNQLSQLDKELHS 180 DSE + H W++ N I L DP N YE N E+ ++ L + Sbjct: 118 -VDSEPNP-HAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKT 175 Query: 181 ILQPV--EKKKIIVFHEAYRYFASHYNL-SIVTFPMSHSVFMGAASLRNIRSKIISDKIS 237 ++ V EK+ + Y A + S+ +P++ + +R+ +++ S KI Sbjct: 176 RIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIK 235 Query: 238 CLFYGPEFDSKIIRSITNDTGV-MSAILDPEGMLIAEGPE-LYFQLMR 283 +F + + + +T +L + + +GP Y L+R Sbjct: 236 FIFSESTNSDQPAKQVAYETNASYGGVLYVDSLSKPDGPAPTYLDLLR 283 |
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 294 | zinc uptake ABC transporter [Candidatus Liberibacter as | |||
315121882 | 297 | zinc uptake ABC transporter [Candidatus Liberibacter so | 1 | 1e-104 | |
222086278 | 313 | zinc uptake ABC transporter [Agrobacterium radiobacter | 1 | 2e-60 | |
86358318 | 352 | zinc uptake ABC transporter, substrate-binding protein | 1 | 1e-55 | |
241205424 | 344 | periplasmic solute binding protein [Rhizobium leguminos | 1 | 2e-55 | |
209549968 | 351 | periplasmic solute binding protein [Rhizobium leguminos | 1 | 8e-55 | |
325292922 | 328 | High-affinity zinc uptake system protein znuA [Agrobact | 1 | 1e-54 | |
23500837 | 334 | zinc ABC transporter periplasmic zinc-binding protein [ | 1 | 7e-54 | |
62317941 | 334 | zinc ABC transporter periplasmic zinc-bnding protein [B | 1 | 7e-54 | |
110636330 | 303 | periplasmic solute binding protein [Mesorhizobium sp. B | 1 | 7e-54 | |
225628412 | 340 | zinc ABC transporter, periplasmic zinc-binding protein | 1 | 7e-54 |
>gi|315121882|ref|YP_004062371.1| zinc uptake ABC transporter [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 297 | Back alignment and organism information |
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Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 183/295 (62%), Positives = 232/295 (78%), Gaps = 2/295 (0%) Query: 1 MKNFLIILIFLFFILSSVARAGSLQVVVSIKPIHSIVSCIMQGIGTPALLVKGASSPHEY 60 MKN LI IF F +L + +RA SLQVV SIKPIHSIV+ IM G+G P+LLVKG SSPHEY Sbjct: 1 MKNTLISFIFFFPLLCATSRASSLQVVASIKPIHSIVASIMNGVGKPSLLVKGNSSPHEY 60 Query: 61 SLRISEAMMLENADIIFWLGAEMESFLVKPLHSLNKQSNVVTLSHSPDLHRILLRDNHSH 120 SLR S+ MML+NADIIFWLG+EME FLVKPL ++KQSN++TLS+SP+LH+I L Sbjct: 61 SLRPSDTMMLKNADIIFWLGSEMEFFLVKPLGYVDKQSNIITLSNSPNLHKITLPQKQQD 120 Query: 121 FHDSEA--DDLHLWLNPLNVQYIAHVIAMELIKKDPRNKIIYEKNEEEFKNQLSQLDKEL 178 H A D+HLWL P+N +++AHVIA ELIK DP+NK IY KNEE+F +L +LDKEL Sbjct: 121 HHHGGAVVYDMHLWLAPINAKHMAHVIAQELIKNDPKNKEIYTKNEEDFGTKLDKLDKEL 180 Query: 179 HSILQPVEKKKIIVFHEAYRYFASHYNLSIVTFPMSHSVFMGAASLRNIRSKIISDKISC 238 H IL PV+ KKIIV H AYRYF HYNL I+ M +++ +GA SL+ I+ +I+S+K+SC Sbjct: 181 HDILLPVQGKKIIVSHGAYRYFEKHYNLQIIDSIMPNTILLGAKSLQKIKDRIVSEKVSC 240 Query: 239 LFYGPEFDSKIIRSITNDTGVMSAILDPEGMLIAEGPELYFQLMRSMSNSIAKNC 293 LFY PEFDSKII+SI N+TG++ +LDPEG+L+ EGP+LYFQL+R++S SIA+NC Sbjct: 241 LFYEPEFDSKIIQSIANNTGIIVGMLDPEGLLLPEGPDLYFQLLRNLSKSIAQNC 295 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|222086278|ref|YP_002544811.1| zinc uptake ABC transporter [Agrobacterium radiobacter K84] Length = 313 | Back alignment and organism information |
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>gi|86358318|ref|YP_470210.1| zinc uptake ABC transporter, substrate-binding protein [Rhizobium etli CFN 42] Length = 352 | Back alignment and organism information |
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>gi|241205424|ref|YP_002976520.1| periplasmic solute binding protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 344 | Back alignment and organism information |
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>gi|209549968|ref|YP_002281885.1| periplasmic solute binding protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 351 | Back alignment and organism information |
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>gi|325292922|ref|YP_004278786.1| High-affinity zinc uptake system protein znuA [Agrobacterium sp. H13-3] Length = 328 | Back alignment and organism information |
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>gi|23500837|ref|NP_700277.1| zinc ABC transporter periplasmic zinc-binding protein [Brucella suis 1330] Length = 334 | Back alignment and organism information |
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>gi|62317941|ref|YP_223794.1| zinc ABC transporter periplasmic zinc-bnding protein [Brucella abortus bv. 1 str. 9-941] Length = 334 | Back alignment and organism information |
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>gi|110636330|ref|YP_676538.1| periplasmic solute binding protein [Mesorhizobium sp. BNC1] Length = 303 | Back alignment and organism information |
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>gi|225628412|ref|ZP_03786446.1| zinc ABC transporter, periplasmic zinc-binding protein [Brucella ceti str. Cudo] Length = 340 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 294 | zinc uptake ABC transporter [Candidatus Liberibacter as | ||
cd01019 | 286 | cd01019, ZnuA, Zinc binding protein ZnuA | 4e-59 | |
pfam01297 | 272 | pfam01297, SBP_bac_9, Periplasmic solute binding protei | 5e-57 | |
PRK09545 | 311 | PRK09545, znuA, high-affinity zinc transporter periplas | 1e-48 | |
COG0803 | 303 | COG0803, LraI, ABC-type metal ion transport system, per | 7e-37 | |
cd01017 | 282 | cd01017, AdcA, Metal binding protein AcdA | 5e-32 | |
cd01018 | 266 | cd01018, ZntC, Metal binding protein ZntC | 7e-29 | |
cd01137 | 287 | cd01137, PsaA, Metal binding protein PsaA | 5e-28 | |
cd01016 | 276 | cd01016, TroA, Metal binding protein TroA | 4e-15 | |
COG4531 | 318 | COG4531, ZnuA, ABC-type Zn2+ transport system, periplas | 1e-64 | |
cd01145 | 203 | cd01145, TroA_c, Periplasmic binding protein TroA_c | 5e-16 | |
cd01020 | 264 | cd01020, TroA_b, Metal binding protein TroA_b | 3e-13 | |
TIGR03772 | 479 | TIGR03772, anch_rpt_subst, anchored repeat ABC transpor | 1e-10 |
>gnl|CDD|29738 cd01019, ZnuA, Zinc binding protein ZnuA | Back alignment and domain information |
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>gnl|CDD|144773 pfam01297, SBP_bac_9, Periplasmic solute binding protein family | Back alignment and domain information |
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>gnl|CDD|181940 PRK09545, znuA, high-affinity zinc transporter periplasmic component; Reviewed | Back alignment and domain information |
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>gnl|CDD|31146 COG0803, LraI, ABC-type metal ion transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism] | Back alignment and domain information |
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>gnl|CDD|29736 cd01017, AdcA, Metal binding protein AcdA | Back alignment and domain information |
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>gnl|CDD|29737 cd01018, ZntC, Metal binding protein ZntC | Back alignment and domain information |
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>gnl|CDD|29740 cd01137, PsaA, Metal binding protein PsaA | Back alignment and domain information |
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>gnl|CDD|29735 cd01016, TroA, Metal binding protein TroA | Back alignment and domain information |
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>gnl|CDD|34180 COG4531, ZnuA, ABC-type Zn2+ transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism] | Back alignment and domain information |
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>gnl|CDD|29748 cd01145, TroA_c, Periplasmic binding protein TroA_c | Back alignment and domain information |
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>gnl|CDD|29739 cd01020, TroA_b, Metal binding protein TroA_b | Back alignment and domain information |
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>gnl|CDD|163484 TIGR03772, anch_rpt_subst, anchored repeat ABC transporter, substrate-binding protein | Back alignment and domain information |
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Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 294 | zinc uptake ABC transporter [Candidatus Liberibacter as | ||
PRK09545 | 308 | znuA high-affinity zinc transporter periplasmic compone | 100.0 | |
cd01019 | 286 | ZnuA Zinc binding protein ZnuA. These proteins have bee | 100.0 | |
cd01017 | 282 | AdcA Metal binding protein AcdA. These proteins have be | 100.0 | |
cd01137 | 287 | PsaA Metal binding protein PsaA. These proteins have be | 100.0 | |
cd01016 | 276 | TroA Metal binding protein TroA. These proteins have be | 100.0 | |
cd01018 | 266 | ZntC Metal binding protein ZntC. These proteins are pre | 100.0 | |
pfam01297 | 272 | SBP_bac_9 Periplasmic solute binding protein family. Th | 100.0 | |
cd01020 | 264 | TroA_b Metal binding protein TroA_b. These proteins are | 100.0 | |
COG0803 | 303 | LraI ABC-type metal ion transport system, periplasmic c | 100.0 | |
COG4531 | 318 | ZnuA ABC-type Zn2+ transport system, periplasmic compon | 100.0 | |
COG4607 | 320 | CeuA ABC-type enterochelin transport system, periplasmi | 96.12 | |
cd01145 | 203 | TroA_c Periplasmic binding protein TroA_c. These protei | 100.0 | |
cd00636 | 148 | TroA-like Helical backbone metal receptor (TroA-like do | 98.21 | |
cd01977 | 415 | Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitr | 94.78 |
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed | Back alignment and domain information |
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>cd01019 ZnuA Zinc binding protein ZnuA | Back alignment and domain information |
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>cd01017 AdcA Metal binding protein AcdA | Back alignment and domain information |
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>cd01137 PsaA Metal binding protein PsaA | Back alignment and domain information |
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>cd01016 TroA Metal binding protein TroA | Back alignment and domain information |
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>cd01018 ZntC Metal binding protein ZntC | Back alignment and domain information |
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>pfam01297 SBP_bac_9 Periplasmic solute binding protein family | Back alignment and domain information |
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>cd01020 TroA_b Metal binding protein TroA_b | Back alignment and domain information |
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>COG0803 LraI ABC-type metal ion transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism] | Back alignment and domain information |
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>COG4531 ZnuA ABC-type Zn2+ transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism] | Back alignment and domain information |
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>COG4607 CeuA ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism] | Back alignment and domain information |
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>cd01145 TroA_c Periplasmic binding protein TroA_c | Back alignment and domain information |
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>cd00636 TroA-like Helical backbone metal receptor (TroA-like domain) | Back alignment and domain information |
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>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like | Back alignment and domain information |
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Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
Identity | Alignment graph | Length | Definition | E-value |
Target | 294 | zinc uptake ABC transporter [Candidatus Liberibacter as | ||
1psz_A | 303 | Pneumococcal Surface Antigen Psaa Length = 303 | 5e-45 | |
2xh8_A | 291 | X-Ray Structure Of 119-141 Znua Deletion Mutant Fro | 9e-45 | |
2xqv_A | 288 | The X-Ray Structure Of The Zn(Ii) Bound Znua From S | 3e-44 | |
1xvl_A | 321 | The Three-Dimensional Structure Of Mntc From Synech | 5e-44 | |
2osv_A | 284 | Crystal Structure Of Znua From E. Coli Length = 284 | 7e-44 | |
3hh8_A | 294 | Crystal Structure And Metal Binding Properties Of T | 3e-43 | |
2ogw_A | 310 | Structure Of Abc Type Zinc Transporter From E. Coli | 7e-43 | |
2o1e_A | 312 | Crystal Structure Of The Metal-Dependent Lipoprotei | 9e-43 | |
3gi1_A | 286 | Crystal Structure Of The Laminin-Binding Protein Lb | 7e-41 | |
3hjt_A | 287 | Structure Of Laminin Binding Protein (Lmb) Of Strep | 2e-38 | |
3cx3_A | 284 | Crystal Structure Analysis Of The Streptococcus Pne | 1e-37 | |
2ov1_A | 260 | Crystal Structure Of Apo Form Of Znua With Flexible | 6e-37 | |
1toa_A | 313 | Periplasmic Zinc Binding Protein Troa From Treponem | 1e-35 | |
1pq4_A | 291 | Crystal Structure Of Znua Length = 291 | 3e-35 | |
1k0f_A | 277 | Crystal Structure Of Zn(Ii)-Free T. Pallidum Troa L | 1e-34 | |
3mfq_A | 282 | A Glance Into The Metal Binding Specificity Of Troa | 2e-31 |
>gi|7767025|pdb|1PSZ|A Chain A, Pneumococcal Surface Antigen Psaa Length = 303 | Back alignment and structure |
Score = 185 bits (470), Expect = 5e-45, Method: Composition-based stats. Identities = 72/287 (25%), Positives = 121/287 (42%), Gaps = 15/287 (5%) Query: 18 VARAGSLQVVVSIKPIHSIVSCIMQGIGTPALLVKGASSPHEYSLRISEAMMLENADIIF 77 L+VV + I I I +V PHEY + AD+IF Sbjct: 21 TTSGQKLKVVATNSIIADITKNIAGDKIDLHSIVPIGQDPHEYEPLPEDVKKTSEADLIF 80 Query: 78 WLGAEMES----FLVKPLHSLNKQSNVVTLSHSPDLHRILLRDNHSHFHDSEADDLHLWL 133 + G +E+ + K + + K N + S + I L + + +D H WL Sbjct: 81 YNGINLETGGNAWFTKLVENAKKTENKDYFAVSDGVDVIYLEGQN----EKGKEDPHAWL 136 Query: 134 NPLNVQYIAHVIAMELIKKDPRNKIIYEKNEEEFKNQLSQLDKELHSILQ--PVEKKKII 191 N N A IA +L KDP NK YEKN +E+ ++L +LDKE P EKK I+ Sbjct: 137 NLENGIIFAKNIAKQLSAKDPNNKEFYEKNLKEYTDKLDKLDKESKDKFNKIPAEKKLIV 196 Query: 192 VFHEAYRYFASHYNL-SIVTFPMSHSVFMGAASLRNIRSKIISDKISCLFYGPEFDSKII 250 A++YF+ Y + S + ++ ++ + K+ K+ LF D + + Sbjct: 197 TSEGAFKYFSKAYGVPSAYIWEINTEEEGTPEQIKTLVEKLRQTKVPSLFVESSVDDRPM 256 Query: 251 RSITNDTGVMSAI---LDPEGMLIAEGPELYFQLMRSMSNSIAKNCS 294 ++++ DT + D EG + Y+ +M+ + IA+ + Sbjct: 257 KTVSQDTNIPIYAQIFTDSIAEQGKEG-DSYYSMMKYNLDKIAEGLA 302 |
>gi|330689298|pdb|2XH8|A Chain A, X-Ray Structure Of 119-141 Znua Deletion Mutant From Salmonella Enterica Length = 291 | Back alignment and structure |
>gi|330689303|pdb|2XQV|A Chain A, The X-Ray Structure Of The Zn(Ii) Bound Znua From Salmonella Enterica Length = 288 | Back alignment and structure |
>gi|66360618|pdb|1XVL|A Chain A, The Three-Dimensional Structure Of Mntc From Synechocystis 6803 Length = 321 | Back alignment and structure |
>gi|146387330|pdb|2OSV|A Chain A, Crystal Structure Of Znua From E. Coli Length = 284 | Back alignment and structure |
>gi|134105166|pdb|2OGW|A Chain A, Structure Of Abc Type Zinc Transporter From E. Coli Length = 310 | Back alignment and structure |
>gi|122921273|pdb|2O1E|A Chain A, Crystal Structure Of The Metal-Dependent Lipoprotein Ycdh From Bacillus Subtilis, Northeast Structural Genomics Target Sr583 Length = 312 | Back alignment and structure |
>gi|255311808|pdb|3GI1|A Chain A, Crystal Structure Of The Laminin-Binding Protein Lbp Of Streptococcus Pyogenes Length = 286 | Back alignment and structure |
>gi|270047650|pdb|3HJT|A Chain A, Structure Of Laminin Binding Protein (Lmb) Of Streptococcus Agalactiae A Bifunctional Protein With Adhesin And Metal Transporting Activity Length = 287 | Back alignment and structure |
>gi|195927500|pdb|3CX3|A Chain A, Crystal Structure Analysis Of The Streptococcus Pneumoniae Adcaii Protein Length = 284 | Back alignment and structure |
>gi|152149231|pdb|2OV1|A Chain A, Crystal Structure Of Apo Form Of Znua With Flexible Loop Deletion Length = 260 | Back alignment and structure |
>gi|5542493|pdb|1TOA|A Chain A, Periplasmic Zinc Binding Protein Troa From Treponema Pallidum Length = 313 | Back alignment and structure |
>gi|38492833|pdb|1PQ4|A Chain A, Crystal Structure Of Znua Length = 291 | Back alignment and structure |
>gi|20663982|pdb|1K0F|A Chain A, Crystal Structure Of Zn(Ii)-Free T. Pallidum Troa Length = 277 | Back alignment and structure |
>gi|328877178|pdb|3MFQ|A Chain A, A Glance Into The Metal Binding Specificity Of Troa: Where Elaborate Behaviors Occur In The Active Center Length = 282 | Back alignment and structure |
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 294 | zinc uptake ABC transporter [Candidatus Liberibacter as | ||
3gi1_A | 286 | LBP, laminin-binding protein of group A streptococci; z | 2e-47 | |
1pq4_A | 291 | Periplasmic binding protein component of AN ABC type zi | 3e-45 | |
3hh8_A | 294 | Metal ABC transporter substrate-binding lipoprotein; me | 2e-43 | |
2prs_A | 284 | High-affinity zinc uptake system protein ZNUA; protein | 4e-42 | |
2o1e_A | 312 | YCDH; alpha-beta protein, structural genomics, PSI-2, p | 8e-40 | |
3cx3_A | 284 | Lipoprotein; zinc-binding, transport, lipid binding pro | 1e-33 | |
1xvl_A | 321 | Mn transporter, MNTC protein; manganese, ABC-type trans | 2e-32 | |
1toa_A | 313 | Tromp-1, protein (periplasmic binding protein TROA); zi | 1e-31 |
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A Length = 286 | Back alignment and structure |
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Score = 184 bits (467), Expect = 2e-47 Identities = 55/277 (19%), Positives = 105/277 (37%), Gaps = 7/277 (2%) Query: 21 AGSLQVVVSIKPIHSIVSCIMQGIGTPALLVKGASSPHEYSLRISEAMMLENADIIFWLG 80 + VV S P++++ + + ++ GA H + +++ + +AD+ + Sbjct: 10 TQGMSVVTSFYPMYAMTKEVSGDLNDVRMIQSGAG-IHSFEPSVNDVAAIYDADLFVYHS 68 Query: 81 AEMESFLVKPLHSLNKQSNVVTLSHSPDLHRILLRDNHSHFHDSEAD----DLHLWLNPL 136 +E++ +L K V + P + D H W +P+ Sbjct: 69 HTLEAWARDLDPNLKKSKVDVFEASKPLTLDRVKGLEDMEVTQGIDPATLYDPHTWTDPV 128 Query: 137 NVQYIAHVIAMELIKKDPRNKIIYEKNEEEFKNQLSQLDKELHSILQPVEKKKIIVFHEA 196 A IA EL + DP++K Y KN + FK + QL +E + V K + H A Sbjct: 129 LAGEEAVNIAKELGRLDPKHKDSYTKNAKAFKKEAEQLTEEYTQKFKKVRSKTFVTQHTA 188 Query: 197 YRYFASHYNLSIVTFP-MSHSVFMGAASLRNIRSKIISDKISCLFYGPEFDSKIIRSITN 255 + Y A + L + +S L+ I+ + + +F + KI +I Sbjct: 189 FSYLAKRFGLKQLGISGISPEQEPSPRQLKEIQDFVKEYNVKTIFAEDNVNPKIAHAIAK 248 Query: 256 DTGVMSAILDPEGMLIAEGPELYFQLMRSMSNSIAKN 292 TG L P G + Y + +R+ + + Sbjct: 249 STGAKVKTLSPLEAAP-SGNKTYLENLRANLEVLYQQ 284 |
>1pq4_A Periplasmic binding protein component of AN ABC type zinc uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A Length = 291 | Back alignment and structure |
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>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A Length = 284 | Back alignment and structure |
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>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis} Length = 312 | Back alignment and structure |
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>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae} Length = 284 | Back alignment and structure |
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>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2 Length = 321 | Back alignment and structure |
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>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC transporter; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A Length = 313 | Back alignment and structure |
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Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 294 | zinc uptake ABC transporter [Candidatus Liberibacter as | ||
2o1e_A | 312 | YCDH; alpha-beta protein, structural genomics, PSI-2, p | 100.0 | |
2prs_A | 284 | High-affinity zinc uptake system protein ZNUA; protein | 100.0 | |
3cx3_A | 284 | Lipoprotein; zinc-binding, transport, lipid binding pro | 100.0 | |
3gi1_A | 286 | LBP, laminin-binding protein of group A streptococci; z | 100.0 | |
3hh8_A | 294 | Metal ABC transporter substrate-binding lipoprotein; me | 100.0 | |
1toa_A | 313 | Tromp-1, protein (periplasmic binding protein TROA); zi | 100.0 | |
1pq4_A | 291 | Periplasmic binding protein component of AN ABC type zi | 100.0 | |
1xvl_A | 321 | Mn transporter, MNTC protein; manganese, ABC-type trans | 100.0 |
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis} | Back alignment and structure |
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Probab=100.00 E-value=0 Score=453.62 Aligned_cols=274 Identities=24% Similarity=0.394 Sum_probs=243.6 Q ss_pred CCCCEEEEEECHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCC Q ss_conf 23880599972289999999707944178870589983533568024566502578999676610356899973145576 Q gi|254780717|r 20 RAGSLQVVVSIKPIHSIVSCIMQGIGTPALLVKGASSPHEYSLRISEAMMLENADIIFWLGAEMESFLVKPLHSLNKQSN 99 (294) Q Consensus 20 ~~~~~~Vv~s~~pl~~lv~~I~gd~~~V~~L~~~g~dpH~y~~tp~d~~~l~~Adlii~~G~~~E~~~~~~~~~~~~~~~ 99 (294) +.++++||||++|+++||++|+||+++|++|+|+|.|||+|+|+|+|+++|++||+|||||++||+|+.++++.+.+... T Consensus 18 ~~~kl~VvtS~~pl~~~v~~I~gd~v~V~~li~~g~dPH~ye~~p~d~~~l~~Adliv~~G~~le~~l~~~~~~~~~~~~ 97 (312) T 2o1e_A 18 KGDKLHVVTTFYPMYEFTKQIVKDKGDVDLLIPSSVEPHDWEPTPKDIANIQDADLFVYNSEYMETWVPSAEKSMGQGHA 97 (312) T ss_dssp ---CEEEEESSHHHHHHHHHHHGGGEEEEESSCTTSCTTTCCCCHHHHHHHHHSSEEEESCTTTSTTHHHHHHTTCSSSC T ss_pred CCCCCEEEEECHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHCCCEEEECCCCHHHHHHHHHHHCCCCCC T ss_conf 78985899987899999999828951799805989898367589999999971999999287516789999986457784 Q ss_pred EEEEEECCCCCCCC------CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 79975135446210------012111233212247567765555678999999997421865658899899998631222 Q gi|254780717|r 100 VVTLSHSPDLHRIL------LRDNHSHFHDSEADDLHLWLNPLNVQYIAHVIAMELIKKDPRNKIIYEKNEEEFKNQLSQ 173 (294) Q Consensus 100 ~i~~~~~~~~~~~~------~~~~~~~~~~~~~~dpH~Wl~p~n~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~L~~ 173 (294) +......++..+. ..+++++++++++.|||+|+||.|++.++++|+++|+++||+++++|++|+++|.++|++ T Consensus 98 -~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~dPH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~n~~~~~~~l~~ 176 (312) T 2o1e_A 98 -VFVNASKGIDLMEGSEEEHEEHDHGEHEHSHAMDPHVWLSPVLAQKEVKNITAQIVKQDPDNKEYYEKNSKEYIAKLQD 176 (312) T ss_dssp -EEEETTTTCCCCCC----------------CCCCCGGGGSHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH T ss_pred -EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH T ss_conf -1454046754332222223456665444457889821330889999999999998521800069999999999988999 Q ss_pred HHHHHHHHCCCCCCCEEEECCCHHHHHHHHCCCCEEC-CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHH Q ss_conf 3589998503002781462062157789874981200-346775444978899999999754993899818889789999 Q gi|254780717|r 174 LDKELHSILQPVEKKKIIVFHEAYRYFASHYNLSIVT-FPMSHSVFMGAASLRNIRSKIISDKISCLFYGPEFDSKIIRS 252 (294) Q Consensus 174 l~~~~~~~~~~~~~~~~i~~H~a~~Yf~~~~gl~~~~-~~~~~~~~~s~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ 252 (294) |++++++.+.+.+++.++++|++|+||+++|||++.+ ++.+++.+||++++.++++.||+++|+|||+|++++++.++. T Consensus 177 l~~~~~~~~~~~~~~~~v~~H~a~~Yf~~~~gl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~ 256 (312) T 2o1e_A 177 LDKLYRTTAKKAEKKEFITQHTAFGYLAKEYGLKQVPIAGLSPDQEPSAASLAKLKTYAKEHNVKVIYFEEIASSKVADT 256 (312) T ss_dssp HHHHHHHHHHSCSCCEEEESSCTTHHHHHHTTCEEEECSSCCSSSCCCHHHHHHHHHHTTSSCCCEEECSSCCCHHHHHH T ss_pred HHHHHHHHHHHHCCCCCEEECCCCHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHH T ss_conf 99999998655124531012430010687689658863035764576756799999999983997899828989099999 Q ss_pred HHHHHCCCEEEECCCCCCCCC---CCCCHHHHHHHHHHHHHHHCC Q ss_conf 999719908998053367877---816789999999999987419 Q gi|254780717|r 253 ITNDTGVMSAILDPEGMLIAE---GPELYFQLMRSMSNSIAKNCS 294 (294) Q Consensus 253 ia~e~~~~~~~ld~~~~~~~~---~~~~Y~~~m~~n~~~l~k~ls 294 (294) |++++|++++.++|++..... .+.+|++||+.|+++|.++|+ T Consensus 257 la~e~g~~~~~l~~l~~~~~~~~~~~~~Y~~~m~~N~~~i~~aL~ 301 (312) T 2o1e_A 257 LASEIGAKTEVLNTLEGLSKEEQDKGLGYIDIMKQNLDALKDSLL 301 (312) T ss_dssp HHHHTCCEEECCCCTTCCCHHHHHHCCCHHHHHHHHHHHHHHHHC T ss_pred HHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC T ss_conf 999829976644566566645687647799999999999999866 |
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A | Back alignment and structure |
---|
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae} | Back alignment and structure |
---|
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A | Back alignment and structure |
---|
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC transporter; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A | Back alignment and structure |
---|
>1pq4_A Periplasmic binding protein component of AN ABC type zinc uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A | Back alignment and structure |
---|
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2 | Back alignment and structure |
---|
Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | E-value |
294 | zinc uptake ABC transporter [Candidatus Liberibacter as | |||
d1pq4a_ | 289 | c.92.2.2 (A:) Periplasmic zinc binding protein ZnuA {Sy | 1e-38 | |
d1psza_ | 286 | c.92.2.2 (A:) Pneumococcal surface antigen PssA {Pneumo | 2e-34 | |
d1xvla1 | 279 | c.92.2.2 (A:49-327) Mn transporter MntC {Synechocystis | 2e-32 | |
d1toaa_ | 277 | c.92.2.2 (A:) Periplasmic zinc binding protein TroA {Tr | 1e-31 |
>d1pq4a_ c.92.2.2 (A:) Periplasmic zinc binding protein ZnuA {Synechocystis sp. pcc 6803 [TaxId: 1148]} Length = 289 | Back information, alignment and structure |
---|
class: Alpha and beta proteins (a/b) fold: Chelatase-like superfamily: "Helical backbone" metal receptor family: TroA-like domain: Periplasmic zinc binding protein ZnuA species: Synechocystis sp. pcc 6803 [TaxId: 1148] Score = 153 bits (388), Expect = 1e-38 Identities = 69/295 (23%), Positives = 121/295 (41%), Gaps = 32/295 (10%) Query: 24 LQVVVSIKPIHSIVSCIMQGIGTPALLVKGASSPHEYSLRISEAMMLENADIIFWLGAEM 83 + + VSI P + I + ++LV G + PH Y + + L A+ +G Sbjct: 3 MDITVSIPPQQYFLEKIGGDLVRVSVLVPGNNDPHTYEPKPQQLAALSEAEAYVLIGLGF 62 Query: 84 ESFLVKPLHSLNKQSNVVTLSHSPDLHRILLRDNHSHFHDSEAD---------------- 127 E ++ L + N ++ + + D+ + D Sbjct: 63 EQPWLEKLKAANANMKLIDSAQGITPLEMEKHDHSHGEEEGHDDHSHDGHDHGSESEKEK 122 Query: 128 --------DLHLWLNPLNVQYIAHVIAMELIKKDPRNKIIYEKNEEEFKNQLSQLDKELH 179 D H+WL+P V+ A IA EL + DP N+ YE N F +L +L++EL Sbjct: 123 AKGALMVADPHIWLSPTLVKRQATTIAKELAELDPDNRDQYEANLAAFLAELERLNQELG 182 Query: 180 SILQPVEKKKIIVFHEAYRYFASHYNLSIVTFPMSHSVFMGAASLRNIRSKIISDKISCL 239 ILQP+ ++K IVFH ++ YFA YNL + A L+ + + ++ + Sbjct: 183 QILQPLPQRKFIVFHPSWAYFARDYNL-VQIPIEVEGQEPSAQELKQLIDTAKENNLTMV 241 Query: 240 FYGPEFDSKIIRSITNDTGVMSAILDPEGMLIAEGPELYFQLMRSMSNSIAKNCS 294 F +F +K +I + G +LDP + +++++ IA S Sbjct: 242 FGETQFSTKSSEAIAAEIGAGVELLDPLA-------ADWSSNLKAVAQKIANANS 289 |
>d1psza_ c.92.2.2 (A:) Pneumococcal surface antigen PssA {Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]} Length = 286 | Back information, alignment and structure |
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>d1xvla1 c.92.2.2 (A:49-327) Mn transporter MntC {Synechocystis sp. pcc 6803 [TaxId: 1148]} Length = 279 | Back information, alignment and structure |
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>d1toaa_ c.92.2.2 (A:) Periplasmic zinc binding protein TroA {Treponema pallidum [TaxId: 160]} Length = 277 | Back information, alignment and structure |
---|
Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | Probability |
Target | 294 | zinc uptake ABC transporter [Candidatus Liberibacter as | ||
d1pq4a_ | 289 | Periplasmic zinc binding protein ZnuA {Synechocystis sp | 100.0 | |
d1psza_ | 286 | Pneumococcal surface antigen PssA {Pneumococcus (Strept | 100.0 | |
d1xvla1 | 279 | Mn transporter MntC {Synechocystis sp. pcc 6803 [TaxId: | 100.0 | |
d1toaa_ | 277 | Periplasmic zinc binding protein TroA {Treponema pallid | 100.0 |
>d1pq4a_ c.92.2.2 (A:) Periplasmic zinc binding protein ZnuA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
---|
class: Alpha and beta proteins (a/b) fold: Chelatase-like superfamily: "Helical backbone" metal receptor family: TroA-like domain: Periplasmic zinc binding protein ZnuA species: Synechocystis sp. pcc 6803 [TaxId: 1148] Probab=100.00 E-value=0 Score=456.44 Aligned_cols=265 Identities=25% Similarity=0.399 Sum_probs=238.1 Q ss_pred CCEEEEEECHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCEE Q ss_conf 88059997228999999970794417887058998353356802456650257899967661035689997314557679 Q gi|254780717|r 22 GSLQVVVSIKPIHSIVSCIMQGIGTPALLVKGASSPHEYSLRISEAMMLENADIIFWLGAEMESFLVKPLHSLNKQSNVV 101 (294) Q Consensus 22 ~~~~Vv~s~~pl~~lv~~I~gd~~~V~~L~~~g~dpH~y~~tp~d~~~l~~Adlii~~G~~~E~~~~~~~~~~~~~~~~i 101 (294) .+++||||++|+++||++|+||+++|++|+|+|.|||+|+|||+|+++|++||+|||||.+||.|+.+.+.+.+++..++ T Consensus 1 d~l~Vv~si~pl~~lv~~i~gd~~~V~~L~p~g~dPH~y~~~psd~~~l~~ADliv~~G~~lE~~~~~~~~~~~~~~~~v 80 (289) T d1pq4a_ 1 DAMDITVSIPPQQYFLEKIGGDLVRVSVLVPGNNDPHTYEPKPQQLAALSEAEAYVLIGLGFEQPWLEKLKAANANMKLI 80 (289) T ss_dssp CCEEEEESSHHHHHHHHHHHGGGEEEEESSCTTSCGGGCCCCHHHHHHGGGCSEEEECCTTTTTTTHHHHHHHCSSSEEE T ss_pred CCCEEEEECHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCCCCC T ss_conf 99889997689999999983893479980698979835768999999996599999969632678999998745698741 Q ss_pred EEEECCCCCCCC------------------------CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCH Q ss_conf 975135446210------------------------01211123321224756776555567899999999742186565 Q gi|254780717|r 102 TLSHSPDLHRIL------------------------LRDNHSHFHDSEADDLHLWLNPLNVQYIAHVIAMELIKKDPRNK 157 (294) Q Consensus 102 ~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~dpH~Wl~p~n~~~~a~~I~~~L~~~dP~~~ 157 (294) ..+.+....... ..++++++|+++..|||+||||.|++.++++|+++|+++||+++ T Consensus 81 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DPH~Wldp~n~~~~a~~I~~~L~~~dP~~~ 160 (289) T d1pq4a_ 81 DSAQGITPLEMEKHDHSHGEEEGHDDHSHDGHDHGSESEKEKAKGALMVADPHIWLSPTLVKRQATTIAKELAELDPDNR 160 (289) T ss_dssp ETTTTCCCCBSCC----------------------------------CCBCCCGGGCHHHHHHHHHHHHHHHHHHCGGGH T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 02366443110135665532466665544564455421211000133455512200430178999999999987504203 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCC Q ss_conf 88998999986312223589998503002781462062157789874981200346775444978899999999754993 Q gi|254780717|r 158 IIYEKNEEEFKNQLSQLDKELHSILQPVEKKKIIVFHEAYRYFASHYNLSIVTFPMSHSVFMGAASLRNIRSKIISDKIS 237 (294) Q Consensus 158 ~~y~~N~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~H~a~~Yf~~~~gl~~~~~~~~~~~~~s~~~l~~~~~~ik~~~v~ 237 (294) +.|++|+++|.++|.+|++++++++++++++.++++||+|+||+++|||++.++. .++.+||++++.++++.+|+++|+ T Consensus 161 ~~y~~N~~~~~~~L~~l~~~~~~~l~~~~~~~~v~~H~a~~Yf~~~ygl~~~~~~-~~~~eps~~~l~~l~~~ik~~~i~ 239 (289) T d1pq4a_ 161 DQYEANLAAFLAELERLNQELGQILQPLPQRKFIVFHPSWAYFARDYNLVQIPIE-VEGQEPSAQELKQLIDTAKENNLT 239 (289) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCSCCEEEESSCCCHHHHHHTTCEEEESC-BTTBCCCHHHHHHHHHHHHTTTCC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHCCCEEEEEE-CCCCCCCHHHHHHHHHHHHHCCCC T ss_conf 4565518988765899989999872532478323325328779885485044421-368899989999999999974998 Q ss_pred EEEEECCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCC Q ss_conf 899818889789999999719908998053367877816789999999999987419 Q gi|254780717|r 238 CLFYGPEFDSKIIRSITNDTGVMSAILDPEGMLIAEGPELYFQLMRSMSNSIAKNCS 294 (294) Q Consensus 238 ~if~e~~~~~~~~~~ia~e~~~~~~~ld~~~~~~~~~~~~Y~~~m~~n~~~l~k~ls 294 (294) |||+|+|++++.++.|++++|++++.+||+|. +|.++|+.|+++|++|+| T Consensus 240 ~if~e~q~~~~~~~~la~~~gv~v~~ldpl~~-------~y~~~m~~n~~~i~~A~s 289 (289) T d1pq4a_ 240 MVFGETQFSTKSSEAIAAEIGAGVELLDPLAA-------DWSSNLKAVAQKIANANS 289 (289) T ss_dssp EEEEETTSCCHHHHHHHHHHTCEEEEECTTCS-------SHHHHHHHHHHHHHHHHC T ss_pred EEEECCCCCCHHHHHHHHHCCCCEEEECCCCC-------CHHHHHHHHHHHHHHHCC T ss_conf 99973898939999999980998798788732-------599999999999998649 |
>d1psza_ c.92.2.2 (A:) Pneumococcal surface antigen PssA {Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]} | Back information, alignment and structure |
---|
>d1xvla1 c.92.2.2 (A:49-327) Mn transporter MntC {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
---|
>d1toaa_ c.92.2.2 (A:) Periplasmic zinc binding protein TroA {Treponema pallidum [TaxId: 160]} | Back information, alignment and structure |
---|
Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 294 | zinc uptake ABC transporter [Candidatus Liberibact | ||
2o1e_A_1-189_284-312 | 218 | (A:1-189,A:284-312) YCDH; alpha-beta protein, stru | 3e-30 | |
1xvl_A_1-201_292-321 | 231 | (A:1-201,A:292-321) Mn transporter, MNTC protein; | 5e-30 | |
1pq4_A_1-188_271-291 | 209 | (A:1-188,A:271-291) Periplasmic binding protein co | 3e-29 | |
3cx3_A_1-176_262-284 | 199 | (A:1-176,A:262-284) Lipoprotein; zinc-binding, tra | 2e-28 | |
3hh8_A_1-179 | 179 | (A:1-179) Metal ABC transporter substrate-binding | 7e-28 | |
3gi1_A_1-177 | 177 | (A:1-177) LBP, laminin-binding protein of group A | 6e-26 | |
1toa_A_1-195 | 195 | (A:1-195) Tromp-1, protein (periplasmic binding pr | 3e-25 | |
2prs_A_1-172 | 172 | (A:1-172) High-affinity zinc uptake system protein | 2e-24 | |
2prs_A_173-284 | 112 | (A:173-284) High-affinity zinc uptake system prote | 3e-18 | |
3hh8_A_180-294 | 115 | (A:180-294) Metal ABC transporter substrate-bindin | 5e-18 | |
3gi1_A_178-286 | 109 | (A:178-286) LBP, laminin-binding protein of group | 1e-16 | |
1toa_A_196-313 | 118 | (A:196-313) Tromp-1, protein (periplasmic binding | 1e-16 | |
3cx3_A_177-261 | 85 | (A:177-261) Lipoprotein; zinc-binding, transport, | 1e-14 | |
1xvl_A_202-291 | 90 | (A:202-291) Mn transporter, MNTC protein; manganes | 2e-14 | |
2o1e_A_190-271 | 82 | (A:190-271) YCDH; alpha-beta protein, structural g | 2e-14 | |
1pq4_A_189-270 | 82 | (A:189-270) Periplasmic binding protein component | 1e-13 |
>2o1e_A (A:1-189,A:284-312) YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}Length = 218 | Back alignment and structure |
---|
Score = 126 bits (317), Expect = 3e-30 Identities = 41/177 (23%), Positives = 79/177 (44%), Gaps = 7/177 (3%) Query: 16 SSVARAGSLQVVVSIKPIHSIVSCIMQGIGTPALLVKGASSPHEYSLRISEAMMLENADI 75 S+ ++ L VV + P + I++ G LL+ + PH++ + +++AD+ Sbjct: 14 SADSKGDKLHVVTTFYPXYEFTKQIVKDKGDVDLLIPSSVEPHDWEPTPKDIANIQDADL 73 Query: 76 IFWLGAEMESFLVKPLHSLNKQSNVVTLSHSPDLHRILLRDNHSHFHDSEAD------DL 129 + E+++ S + + V ++ S + + HD D Sbjct: 74 FVYNSEYXETWVPSAEKSXGQ-GHAVFVNASKGIDLXEGSEEEHEEHDHGEHEHSHAXDP 132 Query: 130 HLWLNPLNVQYIAHVIAMELIKKDPRNKIIYEKNEEEFKNQLSQLDKELHSILQPVE 186 H+WL+P+ Q I +++K+DP NK YEKN +E+ +L LDK + + E Sbjct: 133 HVWLSPVLAQKEVKNITAQIVKQDPDNKEYYEKNSKEYIAKLQDLDKLYRTTAKKAE 189 |
>1xvl_A (A:1-201,A:292-321) Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP}Length = 231 | Back alignment and structure |
---|
>1pq4_A (A:1-188,A:271-291) Periplasmic binding protein component of AN ABC type zinc uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP}Length = 209 | Back alignment and structure |
---|
>3cx3_A (A:1-176,A:262-284) Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}Length = 199 | Back alignment and structure |
---|
>3gi1_A (A:1-177) LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_ALength = 177 | Back alignment and structure |
---|
>1toa_A (A:1-195) Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC transporter; 1.80A {Treponema pallidum}Length = 195 | Back alignment and structure |
---|
>2prs_A (A:1-172) High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_ALength = 172 | Back alignment and structure |
---|
>2prs_A (A:173-284) High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_ALength = 112 | Back alignment and structure |
---|
>3gi1_A (A:178-286) LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_ALength = 109 | Back alignment and structure |
---|
>1toa_A (A:196-313) Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC transporter; 1.80A {Treponema pallidum}Length = 118 | Back alignment and structure |
---|
>3cx3_A (A:177-261) Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}Length = 85 | Back alignment and structure |
---|
>1xvl_A (A:202-291) Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP}Length = 90 | Back alignment and structure |
---|
>2o1e_A (A:190-271) YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}Length = 82 | Back alignment and structure |
---|
>1pq4_A (A:189-270) Periplasmic binding protein component of AN ABC type zinc uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP}Length = 82 | Back alignment and structure |
---|
Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 294 | zinc uptake ABC transporter [Candidatus Liberibacter as | ||
1xvl_A_1-201_292-321 | 231 | Mn transporter, MNTC protein; manganese, ABC-type | 100.0 | |
1pq4_A_1-188_271-291 | 209 | Periplasmic binding protein component of AN ABC ty | 100.0 | |
1toa_A_1-195 | 195 | Tromp-1, protein (periplasmic binding protein TROA | 100.0 | |
2o1e_A_1-189_284-312 | 218 | YCDH; alpha-beta protein, structural genomics, PSI | 100.0 | |
3hh8_A_1-179 | 179 | Metal ABC transporter substrate-binding lipoprotei | 100.0 | |
2prs_A_1-172 | 172 | High-affinity zinc uptake system protein ZNUA; pro | 100.0 | |
3cx3_A_1-176_262-284 | 199 | Lipoprotein; zinc-binding, transport, lipid bindin | 100.0 | |
3gi1_A_1-177 | 177 | LBP, laminin-binding protein of group A streptococ | 100.0 | |
2prs_A_173-284 | 112 | High-affinity zinc uptake system protein ZNUA; pro | 99.9 | |
3hh8_A_180-294 | 115 | Metal ABC transporter substrate-binding lipoprotei | 99.9 | |
3gi1_A_178-286 | 109 | LBP, laminin-binding protein of group A streptococ | 99.89 | |
1toa_A_196-313 | 118 | Tromp-1, protein (periplasmic binding protein TROA | 99.89 | |
1xvl_A_202-291 | 90 | Mn transporter, MNTC protein; manganese, ABC-type | 99.78 | |
3cx3_A_177-261 | 85 | Lipoprotein; zinc-binding, transport, lipid bindin | 99.76 | |
1pq4_A_189-270 | 82 | Periplasmic binding protein component of AN ABC ty | 99.77 | |
2o1e_A_190-271 | 82 | YCDH; alpha-beta protein, structural genomics, PSI | 99.76 |
>1xvl_A (A:1-201,A:292-321) Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} | Back alignment and structure |
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Probab=100.00 E-value=9.4e-44 Score=297.88 Aligned_cols=176 Identities=19% Similarity=0.292 Sum_probs=159.6 Q ss_pred CCCEEEEEECHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCE Q ss_conf 38805999722899999997079441788705899835335680245665025789996766103568999731455767 Q gi|254780717|r 21 AGSLQVVVSIKPIHSIVSCIMQGIGTPALLVKGASSPHEYSLRISEAMMLENADIIFWLGAEMESFLVKPLHSLNKQSNV 100 (294) Q Consensus 21 ~~~~~Vv~s~~pl~~lv~~I~gd~~~V~~L~~~g~dpH~y~~tp~d~~~l~~Adlii~~G~~~E~~~~~~~~~~~~~~~~ 100 (294) .++++||||++|+++++++|+||+++|++|+|+|.|||+|||||+|++++++||+|||+|.+||+|+.+++.+. ++.++ T Consensus 43 ~~~l~VvaT~~pl~~~vk~IaGd~v~V~~Li~~g~dPH~yeptp~d~~~i~~ADlii~~G~~~e~~l~~~~~~~-~~~~~ 121 (231) T 1xvl_A 43 EEKKKVLTTFTVLADMVQNVAGDKLVVESITRIGAEIHGYEPTPSDIVKAQDADLILYNGMNLERWFEQFLGNV-KDVPS 121 (231) T ss_dssp CCCCEEEESSHHHHHHHHHHHTTTSEEEESSCSSCCCSSCCCCHHHHHHHHTCSEEEECCTTSSTTHHHHHHTS-SSCCE T ss_pred CCCCEEEEECHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEECCCCCCHHHHHHHHHC-CCCCC T ss_conf 89858999775999999998088269998269897953576899999999669999995997308999987633-45542 Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99751354462100121112332122475677655556789999999974218656588998999986312223589998 Q gi|254780717|r 101 VTLSHSPDLHRILLRDNHSHFHDSEADDLHLWLNPLNVQYIAHVIAMELIKKDPRNKIIYEKNEEEFKNQLSQLDKELHS 180 (294) Q Consensus 101 i~~~~~~~~~~~~~~~~~~~~~~~~~~dpH~Wl~p~n~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~L~~l~~~~~~ 180 (294) +.++++.+.. +..++++++..|||+|+||.|++.++++|++.|+++||+++++|++|+++|.++|+++++++++ T Consensus 122 i~~~~~~~~~------~~~~~~~~~~~dPH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~L~~l~~~~~~ 195 (231) T 1xvl_A 122 VVLTEGIEPI------PIADGPYTDKPNPHAWMSPRNALVYVENIRQAFVELDPDNAKYYNANAAVYSEQLKAIDRQLGA 195 (231) T ss_dssp EETTTTCCCC------BCCSSSSTTSBCCCGGGSHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred EEECCCCCCC------CCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 0111354555------4346765356761110165889999999999987638012579999999999778888999998 Q ss_pred HCCCCCCCEEEECCCHHHHHHHH Q ss_conf 50300278146206215778987 Q gi|254780717|r 181 ILQPVEKKKIIVFHEAYRYFASH 203 (294) Q Consensus 181 ~~~~~~~~~~i~~H~a~~Yf~~~ 203 (294) .+++++..++-++-|-+.|=+|- T Consensus 196 ~~~~i~~~~~~~~~~~~~~~~~~ 218 (231) T 1xvl_A 196 DLEQVPEGPVPTFLDLLEYDARV 218 (231) T ss_dssp HHTTSCSSSCCSHHHHHHHHHHH T ss_pred HHHHCCCCCCCCHHHHHHHHHHH T ss_conf 76427798867799999999999 |
>1pq4_A (A:1-188,A:271-291) Periplasmic binding protein component of AN ABC type zinc uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} | Back alignment and structure |
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>1toa_A (A:1-195) Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC transporter; 1.80A {Treponema pallidum} | Back alignment and structure |
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>2o1e_A (A:1-189,A:284-312) YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis} | Back alignment and structure |
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>2prs_A (A:1-172) High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A | Back alignment and structure |
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>3cx3_A (A:1-176,A:262-284) Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae} | Back alignment and structure |
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>3gi1_A (A:1-177) LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A | Back alignment and structure |
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>2prs_A (A:173-284) High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A | Back alignment and structure |
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>3gi1_A (A:178-286) LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A | Back alignment and structure |
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>1toa_A (A:196-313) Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC transporter; 1.80A {Treponema pallidum} | Back alignment and structure |
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>1xvl_A (A:202-291) Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} | Back alignment and structure |
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>3cx3_A (A:177-261) Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae} | Back alignment and structure |
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>1pq4_A (A:189-270) Periplasmic binding protein component of AN ABC type zinc uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} | Back alignment and structure |
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>2o1e_A (A:190-271) YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis} | Back alignment and structure |
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