254780730

254780730

hypothetical protein CLIBASIA_03085

GeneID in NCBI database:8209735Locus tag:CLIBASIA_03085
Protein GI in NCBI database:254780730Protein Accession:YP_003065143.1
Gene range:+(537063, 537425)Protein Length:120aa
Gene description:hypothetical protein
COG prediction:none
KEGG prediction:hypothetical protein
SEED prediction:Flp pilus assembly protein, pilin Flp
Pathway involved in KEGG:not defined
Subsystem involved in SEED:Widespread colonization island
sequencesequence profile

Prediction of Local Sequence Properties

SourceSummaryResult
scaler
NCBI Databasesequence
PSIPREDsecondary structure
SSPROsecondary structure
DISEMBLcoil and loop
DISEMBLflexible loop
SEGlow complexity
DISOPREDdisordered
DISEMBLmissing residues
DISPROdisordered
TMHMM1 TM-Helix
TOPPRED1 TM-Helix
HMMTOP1 TM-Helix
MEMSAT1 TM-Helix
MEMSAT_SVMnone TM-Helix
PHOBIUS1 TM-Helix
SignalP_HMMno
SignalP_NNyes
COILScoiled coil
70% MSAconservation map
90% MSAconservation map
  
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120
MKMNIIKKILKNGSGATAIEYGLLASLVSVAIISAVSTLGDRMKGVYQTISTELDKGDVPPTKPGSVPMQPESSNPSTRLQPPAKPTSIPVKTKSSKKSPKRIQSPAKNKKSYVKPNKSS
cHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccHHHccccccc
ccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccc
MKMNIIKKILKNGSGATAIEYGLLASLVSVAIISAVSTLGDRMKGVYQTISteldkgdvpptkpgsvpmqpessnpstrlqppakptsipvktksskkspkriqspaknkksyvkpnkss
MKMNIIKKILKNGSGATAIEYGLLASLVSVAIISAVSTLGDRMKGVYQTIsteldkgdvpptkpgsvpmqpessnpstrlqppakptsipvktksskkspkriqspaknkksyvkpnkss
mkmniikkilknGSGATAIEYGllaslvsvaiisavsTLGDRMKGVYQTISTELDKGDVPPTKPGSVPMQPESSNPSTRLQPPAkptsipvktksskkspkRIQSPAKNKKSYVKPNKSS
***NI*KKILKNGSGATAIEYGLLASLVSVAIISAVSTLGDRMKGVYQTISTELDKG***************************************************************
MKMNIIKKILKNGSGATAIEYGLLASLVSVAIISAVSTLGDRMKGVYQTISTELDKGDVPP***********************************************************
MKMNIIKKILKNGSGATAIEYGLLASLVSVAIISAVSTLGDRMKGVYQTISTELDKGDVPPTK*********************************************************
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxHHHHHHHHHHHHHHHHHHHHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
oooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
MKMNIIKKILKNGSGATAIEYGLLASLVSVAIISAVSTLGDRMKGVYQTISTELDKGDVPPTKPGSVPMQPESSNPSTRLQPPAKPTSIPVKTKSSKKSPKRIQSPAKNKKSYVKPNKSS
MKMNIIKKILKNGSGATAIEYGLLASLVSVAIISAVSTLGDRMKGVYQTISTELDKGDVPPTKPGSVPMQPESSNPSTRLQPPAKPTSIPVKTKSSKKSPKRIQSPAKNKKSYVKPNKSS
MKMNIIKKILKNGSGATAIEYGLLASLVSVAIISAVSTLGDRMKGVYQTISTELDKGDVPPTKPGSVPMQPESSNPSTRLQPPAKPTSIPVKTKSSKKSPKRIQSPAKNKKSYVKPNKSS

Close Homologs Detected by BLAST or PSI-BLAST

Homolog within the Genome Detected by BLAST

IdentityAlignment graphLength Definition E-value
Target120 hypothetical protein CLIBASIA_03085 [Candidatus Liberib
25478073258 hypothetical protein CLIBASIA_03095 [Candidatus Li 6e-15
25478073356 hypothetical protein CLIBASIA_03100 [Candidatus Li 1e-14
25478073462 Flp/Fap pilin component [Candidatus Liberibacter a 7e-13
25478073660 hypothetical protein CLIBASIA_03115 [Candidatus Li 4e-04
>gi|254780732|ref|YP_003065145.1| hypothetical protein CLIBASIA_03095 [Candidatus Liberibacter asiaticus str. psy62] Length = 58 Back     alignment
 Score = 70.9 bits (172), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 47/55 (85%)

Query: 1  MKMNIIKKILKNGSGATAIEYGLLASLVSVAIISAVSTLGDRMKGVYQTISTELD 55
          MKM+I+K  L++ SGATAIEYGLLASL++VAII++V+TLG ++  V+  IS++L+
Sbjct: 1  MKMHIVKNFLQDESGATAIEYGLLASLIAVAIIASVTTLGGKLTAVFADISSKLN 55

>gi|254780733|ref|YP_003065146.1| hypothetical protein CLIBASIA_03100 [Candidatus Liberibacter asiaticus str. psy62] Length = 56 Back     alignment
 Score = 69.7 bits (169), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 32/50 (64%), Positives = 43/50 (86%)

Query: 1  MKMNIIKKILKNGSGATAIEYGLLASLVSVAIISAVSTLGDRMKGVYQTI 50
          MKMNI+K  LK+ SGATAIEYGLLASL++VAII++V+TLG ++  V++ I
Sbjct: 1  MKMNIVKDFLKDESGATAIEYGLLASLIAVAIIASVTTLGGKLSKVFEDI 50

>gi|254780734|ref|YP_003065147.1| Flp/Fap pilin component [Candidatus Liberibacter asiaticus str. psy62] Length = 62 Back     alignment
 Score = 64.3 bits (155), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 28/50 (56%), Positives = 41/50 (82%)

Query: 1  MKMNIIKKILKNGSGATAIEYGLLASLVSVAIISAVSTLGDRMKGVYQTI 50
          MKM+I+K  L++ SGATAIEYGLL SL++V II++V+TLG ++K  ++ I
Sbjct: 1  MKMHIVKNFLQDESGATAIEYGLLVSLIAVVIITSVTTLGGKLKKAFEAI 50

>gi|254780736|ref|YP_003065149.1| hypothetical protein CLIBASIA_03115 [Candidatus Liberibacter asiaticus str. psy62] Length = 60 Back     alignment
 Score = 35.0 bits (79), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 37/46 (80%)

Query: 3  MNIIKKILKNGSGATAIEYGLLASLVSVAIISAVSTLGDRMKGVYQ 48
          +N + K+LK+ SGA AIEYG+L +L++VAII+AV+ LG  +KG ++
Sbjct: 2  INCMNKLLKDESGAAAIEYGMLVALIAVAIIAAVTMLGGSLKGTFE 47

Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations

IdentityAlignment graphLength Definition Round E-value
Target120 hypothetical protein CLIBASIA_03085 [Candidatus Liberib
25478073258 hypothetical protein CLIBASIA_03095 [Candidatus Liberib 1 5e-11
25478073356 hypothetical protein CLIBASIA_03100 [Candidatus Liberib 1 1e-10
31512189764 hypothetical protein CKC_00735 [Candidatus Liberibacter 1 1e-09
25478073462 Flp/Fap pilin component [Candidatus Liberibacter asiati 1 6e-09
11624997861 pilus subunit protein [Rhizobium leguminosarum bv. vici 1 9e-08
8385935469 hypothetical protein OA2633_13155 [Oceanicaulis alexand 1 1e-07
25429321159 Flp/Fap pilin component [Hirschia baltica ATCC 49814] L 1 1e-07
8585914356 flp/Fap pilin component [Syntrophus aciditrophicus SB] 1 2e-07
22208446560 component of type IV pilus [Agrobacterium radiobacter K 1 3e-07
3359302058 hypothetical protein BP1991 [Bordetella pertussis Toham 1 4e-07
>gi|254780732|ref|YP_003065145.1| hypothetical protein CLIBASIA_03095 [Candidatus Liberibacter asiaticus str. psy62] Length = 58 Back     alignment and organism information
 Score = 70.9 bits (172), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 47/55 (85%)

Query: 1  MKMNIIKKILKNGSGATAIEYGLLASLVSVAIISAVSTLGDRMKGVYQTISTELD 55
          MKM+I+K  L++ SGATAIEYGLLASL++VAII++V+TLG ++  V+  IS++L+
Sbjct: 1  MKMHIVKNFLQDESGATAIEYGLLASLIAVAIIASVTTLGGKLTAVFADISSKLN 55


Species: Candidatus Liberibacter asiaticus
Genus: Candidatus Liberibacter
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria
>gi|254780733|ref|YP_003065146.1| hypothetical protein CLIBASIA_03100 [Candidatus Liberibacter asiaticus str. psy62] Length = 56 Back     alignment and organism information
>gi|315121897|ref|YP_004062386.1| hypothetical protein CKC_00735 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 64 Back     alignment and organism information
>gi|254780734|ref|YP_003065147.1| Flp/Fap pilin component [Candidatus Liberibacter asiaticus str. psy62] Length = 62 Back     alignment and organism information
>gi|116249978|ref|YP_765816.1| pilus subunit protein [Rhizobium leguminosarum bv. viciae 3841] Length = 61 Back     alignment and organism information
>gi|83859354|ref|ZP_00952875.1| hypothetical protein OA2633_13155 [Oceanicaulis alexandrii HTCC2633] Length = 69 Back     alignment and organism information
>gi|254293211|ref|YP_003059234.1| Flp/Fap pilin component [Hirschia baltica ATCC 49814] Length = 59 Back     alignment and organism information
>gi|85859143|ref|YP_461345.1| flp/Fap pilin component [Syntrophus aciditrophicus SB] Length = 56 Back     alignment and organism information
>gi|222084465|ref|YP_002542994.1| component of type IV pilus [Agrobacterium radiobacter K84] Length = 60 Back     alignment and organism information
>gi|33593020|ref|NP_880664.1| hypothetical protein BP1991 [Bordetella pertussis Tohama I] Length = 58 Back     alignment and organism information

Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch

Conserved Domains in CDD Database Detected by RPS-BLAST

IdentityAlignment graphLength Definition E-value
Target120 hypothetical protein CLIBASIA_03085 [Candidatus Liberib
pfam0496447 pfam04964, Flp_Fap, Flp/Fap pilin component 1e-09
COG384758 COG3847, Flp, Flp pilus assembly protein, pilin Flp [In 1e-10
>gnl|CDD|113726 pfam04964, Flp_Fap, Flp/Fap pilin component Back     alignment and domain information
>gnl|CDD|33638 COG3847, Flp, Flp pilus assembly protein, pilin Flp [Intracellular trafficking and secretion] Back     alignment and domain information

Conserved Domains in CDD Database Detected by HHsearch

IdentityAlignment graphLength Definition Probability
Target 120 hypothetical protein CLIBASIA_03085 [Candidatus Liberib
COG384758 Flp Flp pilus assembly protein, pilin Flp [Intracellula 99.67
pfam0496447 Flp_Fap Flp/Fap pilin component. 99.59
COG4961185 TadG Flp pilus assembly protein TadG [Intracellular tra 97.21
>COG3847 Flp Flp pilus assembly protein, pilin Flp [Intracellular trafficking and secretion] Back     alignment and domain information
>pfam04964 Flp_Fap Flp/Fap pilin component Back     alignment and domain information
>COG4961 TadG Flp pilus assembly protein TadG [Intracellular trafficking and secretion] Back     alignment and domain information

Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch

Homologous Structures Detected by PSI-BLAST against Nonredundant Database

No homologous structure with e-value below 0.005

Homologous Structures in PDB70 Database Detected by RPS-BLAST

No hit with e-value below 0.005

Homologous Structures in PDB70 Database Detected by HHsearch

No hit with probability above 90.00


Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch

Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST

No hit with e-value below 0.005

Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch

No hit with probability above 90.00

Homologous Domains in MMDB70 Database Detected by RPS-BLAST

No hit with e-value below 0.005

Homologous Domains in MMDB70 Database Detected by HHsearch

No hit with probability higher than 90.00