254780747
putative protease IV transmembrane protein
| GeneID in NCBI database: | 8209752 | Locus tag: | CLIBASIA_03170 |
| Protein GI in NCBI database: | 254780747 | Protein Accession: | YP_003065160.1 |
| Gene range: | -(524153, 525034) | Protein Length: | 293aa |
| Gene description: | putative protease IV transmembrane protein | ||
| COG prediction: | [O] [U] Periplasmic serine proteases (ClpP class) | ||
| KEGG prediction: | putative protease IV transmembrane protein; K04773 protease IV [EC:3.4.21.-] | ||
| SEED prediction: | macromolecule metabolism; macromolecule degradation; degradation of proteins, peptides, glycopeptides | ||
| Pathway involved in KEGG: | not defined | ||
| Subsystem involved in SEED: | - none - | ||
| sequence | sequence profile | ||
Prediction of Local Sequence Properties
| Source | Summary | Result |
|---|
|
|
Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
| Identity | Alignment graph | Length | Definition | E-value | |
| Target | 293 | putative protease IV transmembrane protein [Candidatus | |||
| 254780272 | 216 | ATP-dependent Clp protease proteolytic subunit [Ca | 0.025 |
| >gi|254780272|ref|YP_003064685.1| ATP-dependent Clp protease proteolytic subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 216 | Back alignment |
|---|
Score = 30.8 bits (68), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 16/109 (14%)
Query: 41 IAIRGQIEDSQE--LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP 98
+ + GQIED + ++ + ++ + + ++SPGG AG AI+ +Q +K P
Sbjct: 45 VFVTGQIEDHMATLICAQLLFLEAENPQKEISLYINSPGGVVTAGMAIYDTMQFIK--PP 102
Query: 99 VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK 147
+ T AAS G L+ A G G+ F P + L +
Sbjct: 103 ISTFCMGQAASMGSLLLSA------------GEKGMRFALPNARILLHQ 139
|
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
| Identity | Alignment graph | Length | Definition | Round | E-value |
| Target | 293 | putative protease IV transmembrane protein [Candidatus | |||
| 315121910 | 295 | putative protease IV transmembrane protein [Candidatus | 1 | 5e-95 | |
| 15964138 | 319 | putative protease IV transmembrane protein [Sinorhizobi | 1 | 9e-63 | |
| 150395248 | 319 | signal peptide peptidase SppA, 36K type [Sinorhizobium | 1 | 4e-62 | |
| 227820608 | 319 | signal peptide peptidase S49, SppA [Sinorhizobium fredi | 1 | 1e-61 | |
| 209547656 | 316 | signal peptide peptidase SppA, 36K type [Rhizobium legu | 1 | 5e-60 | |
| 116250187 | 327 | peptidase [Rhizobium leguminosarum bv. viciae 3841] Len | 1 | 3e-59 | |
| 241202814 | 316 | signal peptide peptidase SppA, 36K type [Rhizobium legu | 1 | 3e-59 | |
| 15887687 | 317 | proteinase IV [Agrobacterium tumefaciens str. C58] Leng | 1 | 7e-59 | |
| 190890072 | 316 | proteinase IV protein [Rhizobium etli CIAT 652] Length | 1 | 8e-59 | |
| 218458242 | 269 | signal peptide peptidase SppA, 36K type [Rhizobium etli | 1 | 4e-58 |
| >gi|315121910|ref|YP_004062399.1| putative protease IV transmembrane protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 295 | Back alignment and organism information |
|---|
Score = 352 bits (902), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 157/290 (54%), Positives = 221/290 (76%), Gaps = 2/290 (0%)
Query: 6 KKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQI-EDSQELIERIERISRDD 64
K IK R+++ L+ L + YF+W S D +PHVARI I G I +D+++L++RI R+ DD
Sbjct: 6 KNIKKRHIVYLLIALGITYFAWDSIFPDRTPHVARITISGSIGDDNEDLLDRIHRVGTDD 65
Query: 65 SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA 124
SA AL++ +SSPGG+ Y E++F A++KVK RKPV+T V +AAS GYLISCASN I+A+
Sbjct: 66 SAKALVLWISSPGGTVYGSESLFEAVKKVKLRKPVVTLVGGVAASGGYLISCASNAIIAS 125
Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184
++S++GSIGV YP KPFLDKLG+S++++KSSP+K EPSP+S+ NP+ +Q ++++V+
Sbjct: 126 QSSIIGSIGVFLSYPQFKPFLDKLGISVETIKSSPLKGEPSPYSKPNPQTIQNLKELVND 185
Query: 185 SYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244
YHWFV+LVSE R+IPYDK L LS G +W+G +AKK+GLID +GG +EVW+SLY+LGVD+
Sbjct: 186 EYHWFVKLVSEERHIPYDKALTLSSGLVWSGTKAKKLGLIDAIGGNDEVWKSLYSLGVDK 245
Query: 245 SIRKIKDWNPPKNYWFCDLK-NLSISSLLEDTIPLMKQTKVQGLWAVWNP 293
++ IKDW PKNYWF D + S LED++P ++Q +GL AVW P
Sbjct: 246 DVKIIKDWKSPKNYWFFDFNFKKYVKSTLEDSVPFIRQANFEGLLAVWRP 295
|
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|15964138|ref|NP_384491.1| putative protease IV transmembrane protein [Sinorhizobium meliloti 1021] Length = 319 | Back alignment and organism information |
|---|
Score = 244 bits (624), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 127/272 (46%), Positives = 180/272 (66%), Gaps = 5/272 (1%)
Query: 20 LTVVYFS-WSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGG 78
L + FS W E HVAR+A+ G I+D +EL+ER+ERI+ + S ALIV++SSPGG
Sbjct: 32 LALFAFSGWGDVTERARDHVARVAVTGLIQDDRELVERLERIADNQSVKALIVTISSPGG 91
Query: 79 SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
+ Y GE I++AI+KV +KPV+++V +AASAGYLI+ A + IVA ETS+ GSIGV+FQY
Sbjct: 92 TTYGGEVIYKAIRKVAEKKPVVSDVRTLAASAGYLIALAGDRIVAGETSITGSIGVIFQY 151
Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
P VK +DKLGVS++S+KS P+KAEPSPF + +A M+Q ++D SY WFV LV+E R
Sbjct: 152 PQVKTLMDKLGVSLESIKSRPLKAEPSPFHPPSDEARAMIQAMIDDSYGWFVDLVAERRK 211
Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
+P + L L+DGRI+TG +A + L+D +GG +E+ L V + + + DW P
Sbjct: 212 LPRPEALALADGRIFTGRQALEGKLVDELGGDDEIRAFLAERKVSKDL-PVLDWEAPSGT 270
Query: 259 WFCDLKNL---SISSLLEDTIPLMKQTKVQGL 287
L +L S+ +L + P MK + GL
Sbjct: 271 LSFGLGSLLAESVKALGYEAFPTMKSLEKTGL 302
|
Species: Sinorhizobium meliloti Genus: Sinorhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|150395248|ref|YP_001325715.1| signal peptide peptidase SppA, 36K type [Sinorhizobium medicae WSM419] Length = 319 | Back alignment and organism information |
|---|
Score = 242 bits (618), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 125/272 (45%), Positives = 181/272 (66%), Gaps = 5/272 (1%)
Query: 20 LTVVYFS-WSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGG 78
L + FS W E HVAR+A+ G I+D +EL+ER+ERI+ + S ALIV++SSPGG
Sbjct: 32 LALFAFSGWGDVTERARDHVARVAVTGLIQDDRELVERLERIAENQSVKALIVTISSPGG 91
Query: 79 SAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
+ Y GE I++A++KV +KPV+++V +AASAGYLI+ A + IVA ETS+ GSIGV+FQY
Sbjct: 92 TTYGGEVIYKAVRKVAAKKPVVSDVRTLAASAGYLIALAGDRIVAGETSITGSIGVIFQY 151
Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
P VK +DKLGVS++S+KS P+KAEPSPF + +A M+Q ++D SY WFV LV+E R
Sbjct: 152 PQVKTLMDKLGVSLESIKSRPLKAEPSPFHPPSDEARAMIQAMIDDSYGWFVDLVAERRK 211
Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
+P + L L+DGRI+TG +A + L+D +GG +E+ L V + + + DW P +
Sbjct: 212 LPRAEALGLADGRIFTGRQALEGKLVDELGGDDEIRAFLAERKVSKDL-PVLDWEAPSST 270
Query: 259 WFCDLKNL---SISSLLEDTIPLMKQTKVQGL 287
L +L ++ +L + P MK + GL
Sbjct: 271 LSFGLGSLLAEAVKALGYEAFPAMKGLEKTGL 302
|
Species: Sinorhizobium medicae Genus: Sinorhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|227820608|ref|YP_002824578.1| signal peptide peptidase S49, SppA [Sinorhizobium fredii NGR234] Length = 319 | Back alignment and organism information |
|---|
Score = 241 bits (614), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 128/296 (43%), Positives = 191/296 (64%), Gaps = 15/296 (5%)
Query: 10 TRYVMLSLVTLTVVYFS-WSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATA 68
T +L L ++ FS W+ E HVAR+ + G I+D +EL+ER+ERI+ + SA A
Sbjct: 22 TAAAILVLGGFALIAFSGWTEVSERAREHVARVTVSGVIQDDRELVERLERIADNKSAKA 81
Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128
LIV++SSPGG+ Y GE +++AI+KV +KPV+++V +AASAGY+I+ A + IVA ETS+
Sbjct: 82 LIVTISSPGGTTYGGEVLYKAIRKVAAKKPVVSDVRTLAASAGYMIALAGDRIVAGETSI 141
Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188
GSIGV+FQYP VK +DK+GVS++S+KS P+KAEPSPF +P+A M+Q ++D SY+W
Sbjct: 142 TGSIGVIFQYPQVKQLMDKVGVSLESIKSRPLKAEPSPFHPPSPEARAMIQTMIDDSYNW 201
Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
FV LV+E R +P + L L+DGRI+TG +A + L+D +GG +E+ L V + +
Sbjct: 202 FVDLVAERRKLPRPEALALADGRIFTGRQALQGKLVDTIGGDDEIRAFLADRKVSKDL-P 260
Query: 249 IKDWNPPKNYWFCDLKNLSISSLLE----DTIPLMKQTK--------VQGLWAVWN 292
+ DW P + L + +S+ L+ D P M + + GL +VW
Sbjct: 261 VVDWEAPGGSFPFGLSTV-VSNWLKLLGYDAFPAMNGLEKIGGDKLFLDGLVSVWQ 315
|
Species: Sinorhizobium fredii Genus: Sinorhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|209547656|ref|YP_002279573.1| signal peptide peptidase SppA, 36K type [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 316 | Back alignment and organism information |
|---|
Score = 235 bits (600), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 111/253 (43%), Positives = 175/253 (69%), Gaps = 3/253 (1%)
Query: 11 RYVMLSL-VTLTVVYFSWS-SHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATA 68
R V ++L V L + ++S++ + PH+A + I G I D EL+ER++++ D A
Sbjct: 20 RIVAVALIVALGLAFYSFAFGNAGTERPHIAHVTISGLIVDDDELLERLKKVETSDQVKA 79
Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128
++S+SSPGG+ Y GE IF+AI+ + +KPV+++V +AASAGY+I+ A + I+A ++S+
Sbjct: 80 AVISISSPGGTTYGGEKIFKAIRAIAAKKPVVSDVRTLAASAGYMIATAGDTIIAGDSSI 139
Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188
GSIGV+FQYP ++P LDK+GVS++ +KSSP+KAEPSPF E + +A M++++V SY+W
Sbjct: 140 TGSIGVIFQYPQIQPLLDKIGVSLQEIKSSPLKAEPSPFHEASEEAKAMIRNMVVDSYNW 199
Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
FV LV++ R +P D+ L L+DG I+TG +A KV L+D +GG+ E+ L + GVD +
Sbjct: 200 FVDLVADRRKLPRDEVLKLADGTIYTGRQALKVKLVDTIGGEPEIRAYLKSRGVDADLPM 259
Query: 249 IKDWNPPKNYWFC 261
+ DW+ N F
Sbjct: 260 V-DWDKKSNTPFL 271
|
Species: Rhizobium leguminosarum Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|116250187|ref|YP_766025.1| peptidase [Rhizobium leguminosarum bv. viciae 3841] Length = 327 | Back alignment and organism information |
|---|
Score = 233 bits (593), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 107/246 (43%), Positives = 168/246 (68%), Gaps = 2/246 (0%)
Query: 17 LVTLTVVYFSWS-SHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSS 75
+V L ++ ++ PH+A + I G I D EL+ER++++ D A ++S+SS
Sbjct: 38 IVALGFAFYRFALGDAGTQRPHIAHVTISGLIVDDDELLERLKKVETSDQVKAAVISISS 97
Query: 76 PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135
PGG+ Y GE IF+AI+ + +KPV+++V +AASAGY+I+ A + I+A ++S+ GSIGV+
Sbjct: 98 PGGTTYGGEKIFKAIRAISAKKPVVSDVRTLAASAGYMIATAGDTIIAGDSSITGSIGVI 157
Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195
FQYP ++P LDK+GVS++ +KSSP+KAEPSPF E + +A M++++V SY+WFV LV++
Sbjct: 158 FQYPQIQPLLDKIGVSLQEIKSSPLKAEPSPFHEASEEAKTMIRNMVVDSYNWFVDLVAD 217
Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255
R +P D+ L L+DG I+TG +A KV L+D +GG+ E+ L + GVD + + DW+
Sbjct: 218 RRKLPRDEVLKLADGTIYTGRQALKVKLVDAIGGEAEIRAYLTSRGVDSDLPMV-DWDKK 276
Query: 256 KNYWFC 261
N F
Sbjct: 277 SNTPFL 282
|
Species: Rhizobium leguminosarum Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|241202814|ref|YP_002973910.1| signal peptide peptidase SppA, 36K type [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 316 | Back alignment and organism information |
|---|
Score = 233 bits (593), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 107/246 (43%), Positives = 169/246 (68%), Gaps = 2/246 (0%)
Query: 17 LVTLTVVYFSWS-SHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSS 75
+V L ++ ++ PH+A + I G I D EL+ER++++ D A+++S+SS
Sbjct: 27 IVALGFAFYRFALGDAGTERPHIAHVTISGLIVDDDELLERLKKVEISDQVKAVVISISS 86
Query: 76 PGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135
PGG+ Y GE IF+AI+ + +KPV+++V +AASAGY+I+ A + I+A ++S+ GSIGV+
Sbjct: 87 PGGTTYGGEKIFKAIRAISAKKPVVSDVRTLAASAGYMIATAGDTIIAGDSSITGSIGVI 146
Query: 136 FQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195
FQYP ++P LDK+GVS++ +KSSP+KAEPSPF E + +A M++++V SY+WFV LV++
Sbjct: 147 FQYPQIQPLLDKIGVSLQEIKSSPLKAEPSPFHEASEEAKAMIRNMVVDSYNWFVDLVAD 206
Query: 196 SRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPP 255
R +P D+ L L+DG I+TG +A KV L+D +GG+ E+ L + GVD + + DW+
Sbjct: 207 RRKLPRDEVLKLADGTIYTGRQALKVKLVDAIGGEAEIRAYLTSRGVDSDLPMV-DWDKK 265
Query: 256 KNYWFC 261
N F
Sbjct: 266 SNTPFL 271
|
Species: Rhizobium leguminosarum Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|15887687|ref|NP_353368.1| proteinase IV [Agrobacterium tumefaciens str. C58] Length = 317 | Back alignment and organism information |
|---|
Score = 231 bits (590), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 121/290 (41%), Positives = 182/290 (62%), Gaps = 11/290 (3%)
Query: 13 VMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVS 72
++L + + F W + PH+ARI + G I D+ EL+ER+++I++ D+ LIVS
Sbjct: 25 LLLVVGAFGLYRFFWQGPQQSAKPHIARIEVSGLITDNTELLERLDKIAKSDNVKGLIVS 84
Query: 73 LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
+SSPGG+ Y GE IF+ I+ V +KPV+++V +AASAGY+I+ A ++IVA ETS+ GSI
Sbjct: 85 ISSPGGTTYGGERIFKVIRSVAEKKPVVSDVRTLAASAGYMIASAGDVIVAGETSITGSI 144
Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
GV+FQYP + ++KLGVS++ +KSSPMKAEPSPF E +A M++ +V SY WFV L
Sbjct: 145 GVIFQYPQLGQLMEKLGVSLQEIKSSPMKAEPSPFHEAPEEAKTMIRAMVMDSYGWFVDL 204
Query: 193 VSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDW 252
V++ R +P ++ L L+DG I+TG +A L+D +GG++EV GV + + I +W
Sbjct: 205 VADRRKLPREEVLKLADGSIFTGRQALANKLVDTLGGEKEVRAYFETRGVAKDL-PIVEW 263
Query: 253 NPP-KNYWFCDLKNLSISSLL--EDTIPLMKQTK-------VQGLWAVWN 292
P N F I+ LL +D IP ++ + GL +VW
Sbjct: 264 RAPSSNSPFALFSVAQIAKLLGYDDLIPFAGPSQLGADKLFLDGLVSVWQ 313
|
Species: Agrobacterium tumefaciens Genus: Agrobacterium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|190890072|ref|YP_001976614.1| proteinase IV protein [Rhizobium etli CIAT 652] Length = 316 | Back alignment and organism information |
|---|
Score = 231 bits (590), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 109/253 (43%), Positives = 173/253 (68%), Gaps = 3/253 (1%)
Query: 11 RYVMLSLV-TLTVVYFSWS-SHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATA 68
R V ++LV L + ++ ++ PH+A + I G I D EL+ER++++ D A
Sbjct: 20 RIVAVALVVALGLAFYGFAFGGAGTERPHIAHVTISGLIVDDDELLERLKKVETSDQVKA 79
Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128
++S+SSPGG+ + GE IF+AI+ + +KPV+++V +AASAGY+I+ A + I+A ++S+
Sbjct: 80 AVISISSPGGTTFGGEKIFKAIRAISAKKPVVSDVRTLAASAGYMIATAGDTIIAGDSSI 139
Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188
GSIGV+FQYP ++P LDK+GVS++ +KSSP+KAEPSPF E + +A M++++V SY+W
Sbjct: 140 TGSIGVIFQYPQIQPLLDKIGVSLQEIKSSPLKAEPSPFHEASEEAKAMIRNMVVDSYNW 199
Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
FV LV++ R +P D+ L L+DG I+TG +A K+ LID +GG+ E+ L + GVD +
Sbjct: 200 FVDLVADRRKLPRDEVLKLADGTIYTGRQALKMKLIDTIGGEPEIRAYLKSRGVDTDLPM 259
Query: 249 IKDWNPPKNYWFC 261
+ DW+ N F
Sbjct: 260 V-DWDKKSNTPFL 271
|
Species: Rhizobium etli Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|218458242|ref|ZP_03498333.1| signal peptide peptidase SppA, 36K type [Rhizobium etli Kim 5] Length = 269 | Back alignment and organism information |
|---|
Score = 229 bits (584), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 107/253 (42%), Positives = 172/253 (67%), Gaps = 3/253 (1%)
Query: 11 RYVMLSLV-TLTVVYFSWS-SHVEDNSPHVARIAIRGQIEDSQELIERIERISRDDSATA 68
R V ++LV L + ++ ++ PH+A + I G I D EL+ER++++ D A
Sbjct: 1 RIVAVALVVALGLAFYGFAFGGAGTERPHIAHVTISGLIVDDDELLERLKKVETSDQVKA 60
Query: 69 LIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128
++S+SSPGG+ Y GE IF+AI+ + +KPV+++V +AASAGY+++ A + I+A ++S+
Sbjct: 61 AVISISSPGGTTYGGEKIFKAIRAISAKKPVVSDVRTLAASAGYMVATAGDTIIAGDSSI 120
Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188
GSIGV+FQYP ++P LDK+GVS++ +KSSP+KAEPSPF E + +A M++++V SY+W
Sbjct: 121 TGSIGVIFQYPQIQPLLDKIGVSLQEIKSSPLKAEPSPFHEASEEAKAMIRNMVVDSYNW 180
Query: 189 FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRK 248
FV LV++ R +P ++ L L+DG I+TG +A + LID +GG+ E+ L + GVD +
Sbjct: 181 FVDLVADRRKLPREEALKLADGTIFTGRQALQAKLIDTIGGEPEIRAYLKSRGVDADLPM 240
Query: 249 IKDWNPPKNYWFC 261
+ DW+ N F
Sbjct: 241 V-DWDKKSNTPFL 252
|
Species: Rhizobium etli Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
| Identity | Alignment graph | Length | Definition | E-value |
| Target | 293 | putative protease IV transmembrane protein [Candidatus | ||
| COG0616 | 317 | COG0616, SppA, Periplasmic serine proteases (ClpP class | 6e-47 | |
| TIGR00706 | 207 | TIGR00706, SppA_dom, signal peptide peptidase SppA, 36K | 4e-42 | |
| TIGR00705 | 584 | TIGR00705, SppA_67K, signal peptide peptidase SppA, 67K | 2e-33 | |
| cd07022 | 214 | cd07022, S49_Sppa_36K_type, Signal peptide peptidase A | 8e-27 | |
| PRK10949 | 618 | PRK10949, PRK10949, protease 4; Provisional | 1e-24 | |
| cd07019 | 211 | cd07019, S49_SppA_1, Signal peptide peptidase A (SppA), | 4e-23 | |
| cd07018 | 222 | cd07018, S49_SppA_67K_type, Signal peptide peptidase A | 2e-19 | |
| cd00394 | 161 | cd00394, Clp_protease_like, Caseinolytic protease (ClpP | 1e-17 | |
| cd07014 | 177 | cd07014, S49_SppA, Signal peptide peptidase A | 3e-11 | |
| TIGR00705 | 584 | TIGR00705, SppA_67K, signal peptide peptidase SppA, 67K | 3e-07 | |
| COG0740 | 200 | COG0740, ClpP, Protease subunit of ATP-dependent Clp pr | 5e-07 | |
| cd07021 | 178 | cd07021, Clp_protease_NfeD_like, Nodulation formation e | 5e-07 | |
| cd06558 | 195 | cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (Co | 2e-06 | |
| cd07023 | 208 | cd07023, S49_Sppa_N_C, Signal peptide peptidase A (SppA | 4e-58 | |
| pfam01343 | 154 | pfam01343, Peptidase_S49, Peptidase family S49 | 3e-31 | |
| PRK11778 | 330 | PRK11778, PRK11778, putative inner membrane peptidase; | 7e-10 | |
| COG1030 | 436 | COG1030, NfeD, Membrane-bound serine protease (ClpP cla | 1e-07 | |
| cd07020 | 187 | cd07020, Clp_protease_NfeD_1, Nodulation formation effi | 1e-06 | |
| cd07015 | 172 | cd07015, Clp_protease_NfeD, Nodulation formation effici | 4e-06 | |
| cd07016 | 160 | cd07016, S14_ClpP_1, Caseinolytic protease (ClpP) is an | 7e-06 | |
| PRK12553 | 207 | PRK12553, PRK12553, ATP-dependent Clp protease proteoly | 9e-05 | |
| cd07013 | 162 | cd07013, S14_ClpP, Caseinolytic protease (ClpP) is an A | 0.002 | |
| PRK14512 | 197 | PRK14512, PRK14512, ATP-dependent Clp protease proteoly | 0.002 | |
| pfam01972 | 286 | pfam01972, SDH_sah, Serine dehydrogenase proteinase | 7e-05 | |
| pfam00574 | 182 | pfam00574, CLP_protease, Clp protease | 9e-04 | |
| cd07017 | 171 | cd07017, S14_ClpP_2, Caseinolytic protease (ClpP) is an | 0.001 |
| >gnl|CDD|30961 COG0616, SppA, Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 183 bits (465), Expect = 6e-47
Identities = 70/234 (29%), Positives = 122/234 (52%), Gaps = 9/234 (3%)
Query: 32 EDNSPHVARIAIRGQIEDS---------QELIERIERISRDDSATALIVSLSSPGGSAYA 82
+ S +A I + G I ++ E + D S A+++ ++SPGGS A
Sbjct: 55 KRGSKVIAVIHVEGAIVAGGGPLRFIGGDDIEEILRAARADPSVKAVVLRINSPGGSVVA 114
Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
E I RA+++++ +KPV+ V AAS GY I+ A++ IVA +S+ GSIGV+ P +
Sbjct: 115 SELIARALKRLRAKKPVVVSVGGYAASGGYYIALAADKIVADPSSITGSIGVISGAPNFE 174
Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
L+KLGV + + + K SPF + + +++Q +D +Y FV V+E R + +
Sbjct: 175 ELLEKLGVEKEVITAGEYKDILSPFRPLTEEEREILQKEIDETYDEFVDKVAEGRGLSDE 234
Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPK 256
L+ GR+WTG +A ++GL+D +GG ++ + L + + +
Sbjct: 235 AVDKLATGRVWTGQQALELGLVDELGGLDDAVKDAAELAGVKDVPVVYYLEEKS 288
|
Length = 317 |
| >gnl|CDD|129789 TIGR00706, SppA_dom, signal peptide peptidase SppA, 36K type | Back alignment and domain information |
|---|
Score = 167 bits (424), Expect = 4e-42
Identities = 71/195 (36%), Positives = 123/195 (63%), Gaps = 1/195 (0%)
Query: 38 VARIAIRGQIEDSQE-LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96
+A + + G I S E ++I+RI D S AL++ ++SPGG+ A E I+ ++K+K +
Sbjct: 2 IAILPVSGAIAVSPEDFDKKIKRIKDDKSIKALLLRINSPGGTVVASEEIYEKLKKLKAK 61
Query: 97 KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156
KPV+ + +AAS GY I+ A++ IVA ++ GSIGV+ Q V+ +KLG+ + +K
Sbjct: 62 KPVVASMGGVAASGGYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIK 121
Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA 216
S K SP E+ P+ ++Q++V+ SY FV++V++ RN+P + +DGR++TG
Sbjct: 122 SGEYKDIGSPTRELTPEERDILQNLVNESYEQFVQVVAKGRNLPVEDVKKFADGRVFTGR 181
Query: 217 EAKKVGLIDVVGGQE 231
+A K+ L+D +G ++
Sbjct: 182 QALKLRLVDKLGTED 196
|
The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively. Length = 207 |
| >gnl|CDD|162004 TIGR00705, SppA_67K, signal peptide peptidase SppA, 67K type | Back alignment and domain information |
|---|
Score = 138 bits (348), Expect = 2e-33
Identities = 66/210 (31%), Positives = 112/210 (53%), Gaps = 11/210 (5%)
Query: 33 DNSPHVARIAIRGQI---EDSQELI--ERIERISR----DDSATALIVSLSSPGGSAYAG 83
D + + + G I D++ + + + R D A+++ ++SPGGS +A
Sbjct: 305 DVQDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSPGGSVFAS 364
Query: 84 EAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
E I R + + + R KPVI + MAAS GY I+ A++ IVA+ ++ GSIGV P +
Sbjct: 365 EIIRRELARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTITGSIGVFSVLPTFE 424
Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
LD++GV + V + + A S + + +MQ V++ Y F+ +VS RN+
Sbjct: 425 NSLDRIGVHVDGVSTHEL-ANVSLLRPLTAEDQAIMQLSVEAGYRRFLSVVSAGRNLTPT 483
Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232
+ ++ GR+WTG +A GL+D +GG +E
Sbjct: 484 QVDKVAQGRVWTGEDAVSNGLVDALGGLDE 513
|
E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both. Length = 584 |
| >gnl|CDD|132933 cd07022, S49_Sppa_36K_type, Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 8e-27
Identities = 54/193 (27%), Positives = 93/193 (48%), Gaps = 11/193 (5%)
Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAY----AGEAIFRAIQKVKNRKPVITEVHEM 106
+ + I D A+++ + SPGG +AI A + KP++ V+ +
Sbjct: 28 EGIAAAIRAALADPDVRAIVLDIDSPGGEVAGVFELADAIRAA----RAGKPIVAFVNGL 83
Query: 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166
AASA Y I+ A++ IV T+ VGSIGV+ + L+K G+ + + + K + +P
Sbjct: 84 AASAAYWIASAADRIVVTPTAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKVDGNP 143
Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGAEAKKVGLID 225
++ +A +Q VD+ Y FV V+ +R + V + G ++ G EA GL D
Sbjct: 144 DEPLSDEARARLQAEVDALYAMFVAAVARNRGLSAAA--VRATEGGVFRGQEAVAAGLAD 201
Query: 226 VVGGQEEVWQSLY 238
VG ++ +L
Sbjct: 202 AVGTLDDALAALA 214
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. Length = 214 |
| >gnl|CDD|182860 PRK10949, PRK10949, protease 4; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 1e-24
Identities = 70/212 (33%), Positives = 106/212 (50%), Gaps = 23/212 (10%)
Query: 33 DNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGGSAYAG 83
D +A I G I D +E +I D A+++ ++SPGGS A
Sbjct: 323 DTGGSIAVIFANGAIMDGEETPGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTAS 382
Query: 84 EAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
E I + + KPV+ + MAAS GY IS +N IVA+ ++L GSIG+ V+
Sbjct: 383 EVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVINTVE 442
Query: 143 PFLDKLGVSIKSVKSSPM------KAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
LD +GV V +SP+ KA P F QMMQ +++ Y F+ LV++S
Sbjct: 443 NSLDSIGVHTDGVSTSPLADVSITKALPPEFQ-------QMMQLSIENGYKRFITLVADS 495
Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228
R+ ++ ++ G +WTG +AK GL+D +G
Sbjct: 496 RHKTPEQIDKIAQGHVWTGQDAKANGLVDSLG 527
|
Length = 618 |
| >gnl|CDD|132930 cd07019, S49_SppA_1, Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 4e-23
Identities = 58/175 (33%), Positives = 95/175 (54%), Gaps = 2/175 (1%)
Query: 55 ERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR-KPVITEVHEMAASAGYL 113
+I D A+++ ++SPGGS A E I + + KPV+ AAS GY
Sbjct: 28 AQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSAGGAAASGGYW 87
Query: 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPK 173
IS +N IVA ++L GSIG+ V+ LD +GV V +SP+ A+ S + P+
Sbjct: 88 ISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPL-ADVSITRALPPE 146
Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228
A +Q +++ Y F+ LV+++R+ ++ ++ G +WTG +AK GL+D +G
Sbjct: 147 AQLGLQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLG 201
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-terminal domain, similar to Arabidopsis thaliana SppA1 peptidase. Others, including sohB peptidase, protein C and archaeal signal peptide peptidase, do not contain the amino-terminal domain. Interestingly, the single membrane spanning E. coli SppA carries out catalysis using a Ser-Lys dyad with the serine located in the conserved carboxy-terminal protease domain and the lysine in the non-conserved amino-terminal domain. Length = 211 |
| >gnl|CDD|132929 cd07018, S49_SppA_67K_type, Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Score = 91.4 bits (228), Expect = 2e-19
Identities = 46/190 (24%), Positives = 93/190 (48%), Gaps = 4/190 (2%)
Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAAS 109
++L+E +E+ + DD +++ L G E + +A+++ + KPVI + +
Sbjct: 32 RDLLEALEKAAEDDRIKGIVLDLDGLSGGLAKLEELRQALERFRASGKPVIAYA-DGYSQ 90
Query: 110 AGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169
Y ++ A++ I + V G+ + + K LDKLGV ++ + K+ PF+
Sbjct: 91 GQYYLASAADEIYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTR 150
Query: 170 VN--PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227
+ P+A + Q ++DS + ++ V+ SR + D L D + EA + GL+D +
Sbjct: 151 DDMSPEAREQTQALLDSLWDQYLADVAASRGLSPDALEALIDLGGDSAEEALEAGLVDGL 210
Query: 228 GGQEEVWQSL 237
++E+ L
Sbjct: 211 AYRDELEARL 220
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. Interestingly, the single membrane spanning E. coli SppA carries out catalysis using a Ser-Lys dyad with the serine located in the conserved carboxy-terminal protease domain and the lysine in the non-conserved amino-terminal domain. Length = 222 |
| >gnl|CDD|132923 cd00394, Clp_protease_like, Caseinolytic protease (ClpP) is an ATP-dependent protease | Back alignment and domain information |
|---|
Score = 86.3 bits (214), Expect = 1e-17
Identities = 58/190 (30%), Positives = 84/190 (44%), Gaps = 33/190 (17%)
Query: 41 IAIRGQIED-SQELIERIERISRDD-SATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP 98
I I G IED S + + R + D S A+++ +++PGG AG I A+Q RKP
Sbjct: 2 IFINGVIEDVSADQLAAQIRFAEADNSVKAIVLEVNTPGGRVDAGMNIVDALQAS--RKP 59
Query: 99 VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158
VI V AASAGY I+ A+N IV A + VGS G + Y
Sbjct: 60 VIAYVGGQAASAGYYIATAANKIVMAPGTRVGSHGPIGGYGGNG---------------- 103
Query: 159 PMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAE 217
NP A + Q ++ F+ LV+E+R +K + + T E
Sbjct: 104 ------------NPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKDLVLTAQE 151
Query: 218 AKKVGLIDVV 227
A + GL+D +
Sbjct: 152 ALEYGLVDAL 161
|
Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradecamer made up of two heptameric rings stacked back-to-back such that the catalytic triad of each subunit is located at the interface between three monomers, thus making oligomerization essential for function. Another family included in this class of enzymes is the signal peptide peptidase A (SppA; S49) which is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Mutagenesis studies suggest that the catalytic center of SppA comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-terminal domain. Others, including sohB peptidase, protein C, protein 1510-N and archaeal signal peptide peptidase, do not contain the amino-terminal domain. The third family included in this hierarchy is nodulation formation efficiency D (NfeD) which is a membrane-bound Clp-class protease and only found in bacteria and archaea. Majority of the NfeD genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named stomatin operon partner protein (STOPP). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 from Pyrococcus horikoshii has been shown to possess serine protease activity having a Ser-Lys catalytic dyad. Length = 161 |
| >gnl|CDD|132925 cd07014, S49_SppA, Signal peptide peptidase A | Back alignment and domain information |
|---|
Score = 64.6 bits (157), Expect = 3e-11
Identities = 51/193 (26%), Positives = 85/193 (44%), Gaps = 40/193 (20%)
Query: 48 EDSQELIERIERISRDDSA-TALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHE 105
S + R +R D A+++ ++SPGGS A E I + + KPV+
Sbjct: 21 NVSGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVASGGG 80
Query: 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165
AAS GY IS +N IVA ++LVGSIG+
Sbjct: 81 NAASGGYWISTPANYIVANPSTLVGSIGIF------------------------------ 110
Query: 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLI 224
A Q+ +++ Y F+ LV+++R+ ++ + ++ G +WTG +AK GL+
Sbjct: 111 ----GVQLADQLS---IENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGLV 163
Query: 225 DVVGGQEEVWQSL 237
D +G ++ L
Sbjct: 164 DSLGSFDDAVAKL 176
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-terminal domain (sometimes referred to as 67K type). Others, including sohB peptidase, protein C, protein 1510-N and archaeal signal peptide peptidase, do not contain the amino-terminal domain (sometimes referred to as 36K type). Interestingly, the single membrane spanning E. coli SppA carries out catalysis using a Ser-Lys dyad with the serine located in the conserved carboxy-terminal protease domain and the lysine in the non-conserved amino-terminal domain. This family also contains homologs that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Length = 177 |
| >gnl|CDD|162004 TIGR00705, SppA_67K, signal peptide peptidase SppA, 67K type | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 3e-07
Identities = 42/207 (20%), Positives = 78/207 (37%), Gaps = 14/207 (6%)
Query: 57 IERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASAGYLIS 115
I + + D L+ LS+ G I A+ + K+ + + Y ++
Sbjct: 85 IRQAADDRRIEGLVFDLSNFSGWDSPHLVEIGSALSEFKDSGKPVYAYGTNYSQGQYYLA 144
Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS--EVNPK 173
++ I+ V G + + K LDKLGV + K PFS +++P+
Sbjct: 145 SFADEIILNPMGSVDLHGFYTETLFYKGMLDKLGVRWHXFRVGTYKGAVEPFSRKDMSPE 204
Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI-----WTGAEAKKV---GLID 225
A + Q + + ++ VS +R IP + + G + G A+ L+
Sbjct: 205 ARRNYQRWLGELWQNYLSSVSRNRAIPVQQLAPYAQGLLELLQKLNGDGARYALAEKLVT 264
Query: 226 VVGGQEEVWQSLYAL---GVDQSIRKI 249
V E ++L L D++ I
Sbjct: 265 AVCSYAEAGKALKFLFEDDYDKAKNFI 291
|
E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both. Length = 584 |
| >gnl|CDD|31083 COG0740, ClpP, Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 5e-07
Identities = 45/195 (23%), Positives = 76/195 (38%), Gaps = 33/195 (16%)
Query: 41 IAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP 98
I + G+IED ++ ++ + +D + + ++SPGGS AG AI+ +Q +K P
Sbjct: 30 IFLGGEIEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGLAIYDTMQFIK--PP 87
Query: 99 VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158
V T AAS G ++ A G G F P +
Sbjct: 88 VSTICMGQAASMGSVLLMA------------GDKGKRFALPN----------------AR 119
Query: 159 PMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGAE 217
M +PS ++ +++ + R+ +E +K +D + E
Sbjct: 120 IMIHQPSGGAQGQASDIEIHAREILKIKERLNRIYAEHTGQTLEKIEKDTDRDTWMSAEE 179
Query: 218 AKKVGLIDVVGGQEE 232
AK+ GLID V E
Sbjct: 180 AKEYGLIDKVIESRE 194
|
Length = 200 |
| >gnl|CDD|132932 cd07021, Clp_protease_NfeD_like, Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 5e-07
Identities = 45/200 (22%), Positives = 82/200 (41%), Gaps = 35/200 (17%)
Query: 41 IAIRGQIEDSQE-LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV 99
I I G+I+ +ER + ++++ A A+++ + +PGG + I I P
Sbjct: 4 IPIEGEIDPGLAAFVERALKEAKEEGADAVVLDIDTPGGRVDSALEIVDLILNS--PIPT 61
Query: 100 ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSP 159
I V++ AASAG LI+ A++ I A + +G+ + P K S
Sbjct: 62 IAYVNDRAASAGALIALAADEIYMAPGATIGAAEPI-------PGDGNGAADEKVQ--SY 112
Query: 160 MKAEPSPFSE---VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWT-- 214
+A+ +E +P + M V + +P + + G + T
Sbjct: 113 WRAKMRAAAEKKGRDPDIAEAM--------------VDKDIEVP---GVGIKGGELLTLT 155
Query: 215 GAEAKKVGLID-VVGGQEEV 233
EA KVG + + G +E+
Sbjct: 156 ADEALKVGYAEGIAGSLDEL 175
|
Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cleaving hydrophobic substrates. Difference in oligomeric form and catalytic residues between 1510-N (forming a dimer) and ClpP (forming a tetradecamer) shows a possible functional difference: 1510-N is likely to have a regulatory function while ClpP is involved in protein quality control. Length = 178 |
| >gnl|CDD|119339 cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 2e-06
Identities = 43/209 (20%), Positives = 73/209 (34%), Gaps = 65/209 (31%)
Query: 51 QELIERIERISRDDSATALIVS--------------LSSPGGSAYAGEAIFRAIQKV--- 93
EL ++ D ++++ L++ + A R +Q++
Sbjct: 29 DELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFIRELQELLRA 88
Query: 94 --KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151
+ KPVI V+ A G ++ A +I +AAE + F P V KLG+
Sbjct: 89 LLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDA-------KFGLPEV-----KLGLV 136
Query: 152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGR 211
P RLV +R + L+L+ GR
Sbjct: 137 ------------PGG-----------------GGTQRLPRLVGPARA----RELLLT-GR 162
Query: 212 IWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240
+ EA ++GL+D V EE+ + L
Sbjct: 163 RISAEEALELGLVDEVVPDEELLAAALEL 191
|
This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.. Length = 195 |
| >gnl|CDD|132934 cd07023, S49_Sppa_N_C, Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Score = 220 bits (562), Expect = 4e-58
Identities = 77/202 (38%), Positives = 127/202 (62%), Gaps = 6/202 (2%)
Query: 37 HVARIAIRGQIED-----SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91
+A I I G I D + LIE++ + DDS A+++ ++SPGGS A E I+R I+
Sbjct: 1 KIAVIDIEGTISDGGGIGADSLIEQLRKAREDDSVKAVVLRINSPGGSVVASEEIYREIR 60
Query: 92 KVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150
+++ KPV+ + ++AAS GY I+ A++ IVA T++ GSIGV+ Q P ++ LDKLG+
Sbjct: 61 RLRKAKKPVVASMGDVAASGGYYIAAAADKIVANPTTITGSIGVIGQGPNLEELLDKLGI 120
Query: 151 SIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG 210
++KS P K + SP + + ++Q +VD Y FV +V+E R + ++ L+DG
Sbjct: 121 ERDTIKSGPGKDKGSPDRPLTEEERAILQALVDDIYDQFVDVVAEGRGMSGERLDKLADG 180
Query: 211 RIWTGAEAKKVGLIDVVGGQEE 232
R+WTG +A ++GL+D +GG ++
Sbjct: 181 RVWTGRQALELGLVDELGGLDD 202
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. Interestingly, the single membrane spanning E. coli SppA carries out catalysis using a Ser-Lys dyad with the serine located in the conserved carboxy-terminal protease domain and the lysine in the non-conserved amino-terminal domain. Length = 208 |
| >gnl|CDD|144805 pfam01343, Peptidase_S49, Peptidase family S49 | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 3e-31
Identities = 51/141 (36%), Positives = 87/141 (61%)
Query: 97 KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156
KPV+ AAS GY ++ A++ IVA T++VGSIGV+ Q + LDKLGV I +++
Sbjct: 7 KPVVAYAGNYAASGGYYLASAADKIVANPTTIVGSIGVIMQGLNYEGLLDKLGVKIDTIR 66
Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA 216
+ K S F + P+ + +Q ++D +Y FV+ V+++RN+ D+ +++GR+WTG
Sbjct: 67 AGEYKDAGSLFRPLTPEEREALQRMLDETYQMFVQKVAKNRNLTVDQVDKIAEGRVWTGQ 126
Query: 217 EAKKVGLIDVVGGQEEVWQSL 237
+A + GL+D +G ++ L
Sbjct: 127 QAVEAGLVDELGTLDDAIARL 147
|
Length = 154 |
| >gnl|CDD|183309 PRK11778, PRK11778, putative inner membrane peptidase; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (146), Expect = 7e-10
Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 13/165 (7%)
Query: 70 IVSLSSPGG--SAYAGEAIFRAIQKVKNRK---PVITEVHEMAASAGYLISCASNIIVAA 124
++ L SPGG Y G A A Q + R P+ V ++AAS GY+++C ++ I+AA
Sbjct: 127 LLRLESPGGVVHGY-GLA---ASQLQRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAA 182
Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184
++VGSIGV+ Q P L K + ++ + K + F E + + ++ ++
Sbjct: 183 PFAIVGSIGVVAQIPNFHRLLKKHDIDVELHTAGEYKRTLTLFGENTEEGREKFREELEE 242
Query: 185 SYHWFVRLVSESR-NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228
++ F V R + DK + G W G +A ++GL+D +
Sbjct: 243 THQLFKDFVQRYRPQLDIDKV---ATGEHWYGQQALELGLVDEIQ 284
|
Length = 330 |
| >gnl|CDD|31233 COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 1e-07
Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 8/125 (6%)
Query: 11 RYVMLSLVTLTVVYFSWSSHVEDNSPHVARIAIRGQIED-SQELIERIERISRDDSATAL 69
R ++ L L + + S V V I I G I+ S + ++R + + +++A A+
Sbjct: 3 RAGLIILALLLLALAAPS--VATAEKKVYVIEIDGAIDPASADYLQRALQSAEEENAAAV 60
Query: 70 IVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE---MAASAGYLISCASNIIVAAET 126
++ L +PGG + I RAI PVI V AASAG I A++I A
Sbjct: 61 VLELDTPGGLLDSMRQIVRAILNSPV--PVIGYVVPDGARAASAGTYILMATHIAAMAPG 118
Query: 127 SLVGS 131
+ +G+
Sbjct: 119 TNIGA 123
|
Length = 436 |
| >gnl|CDD|132931 cd07020, Clp_protease_NfeD_1, Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 1e-06
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 6/98 (6%)
Query: 38 VARIAIRGQIED-SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96
V + I G I + + +ER + + A ALI+ L +PGG + I +AI +
Sbjct: 1 VYVLEINGAITPATADYLERAIDQAEEGGADALIIELDTPGGLLDSTREIVQAIL--ASP 58
Query: 97 KPVITEVH---EMAASAGYLISCASNIIVAAETSLVGS 131
PV+ V+ AASAG I A++I A + +G+
Sbjct: 59 VPVVVYVYPSGARAASAGTYILLAAHIAAMAPGTNIGA 96
|
Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cleaving hydrophobic substrates. Difference in oligomeric form and catalytic residues between 1510-N (forming a dimer) and ClpP (forming a tetradecamer) shows a possible functional difference: 1510-N is likely to have a regulatory function while ClpP is involved in protein quality control. Length = 187 |
| >gnl|CDD|132926 cd07015, Clp_protease_NfeD, Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease | Back alignment and domain information |
|---|
Score = 47.8 bits (113), Expect = 4e-06
Identities = 36/105 (34%), Positives = 53/105 (50%), Gaps = 6/105 (5%)
Query: 38 VARIAIRGQIEDSQE-LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96
V I+GQI +R I+ D+A A+I+ L +PGG A A I + IQ+ K
Sbjct: 1 VYVAQIKGQITSYTYDQFDRYITIAEQDNAEAIIIELDTPGGRADAAGNIVQRIQQSK-- 58
Query: 97 KPVITEVH---EMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
PVI V+ AASAG I+ S++I A + +G+ + Y
Sbjct: 59 IPVIIYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGY 103
|
Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cleaving hydrophobic substrates. Difference in oligomeric form and catalytic residues between 1510-N (forming a dimer) and ClpP (forming a tetradecamer) shows a possible functional difference: 1510-N is likely to have a regulatory function while ClpP is involved in protein quality control. Length = 172 |
| >gnl|CDD|132927 cd07016, S14_ClpP_1, Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 7e-06
Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 41 IAIRGQIEDS-----QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN 95
I I G I +E + ++ + D + V ++SPGG +AG AI+ A+++ K
Sbjct: 3 IYIYGDIGSDWGVTAKEFKDALDALGDDSD---ITVRINSPGGDVFAGLAIYNALKRHKG 59
Query: 96 RKPVITEVHEMAASAGYLISCASNIIVAAETSL 128
+ V ++ +AASA +I+ A + + ++
Sbjct: 60 K--VTVKIDGLAASAASVIAMAGDEVEMPPNAM 90
|
Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP, although the proteolytic subunit alone does possess some catalytic activity. Active site consists of the triad Ser, His and Asp; some members have lost all of these active site residues and are therefore inactive, while others may have one or two large insertions. ClpP seems to prefer hydrophobic or non-polar residues at P1 or P1' positions in its substrate. The protease exists as a tetradecamer made up of two heptameric rings stacked back-to-back such that the catalytic triad of each subunit is located at the interface between three monomers, thus making oligomerization essential for function. Length = 160 |
| >gnl|CDD|183589 PRK12553, PRK12553, ATP-dependent Clp protease proteolytic subunit; Reviewed | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 9e-05
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 14/85 (16%)
Query: 40 RIAIRGQIED-------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK 92
I + GQ++D +Q L+ +E I D T I +SPGGS AG+AI+ IQ
Sbjct: 37 IIFLGGQVDDASANDVMAQLLV--LESIDPDRDITLYI---NSPGGSVTAGDAIYDTIQF 91
Query: 93 VKNRKPVITEVHEMAASAGYLISCA 117
++ V T AASAG ++ A
Sbjct: 92 IRP--DVQTVCTGQAASAGAVLLAA 114
|
Length = 207 |
| >gnl|CDD|132924 cd07013, S14_ClpP, Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease | Back alignment and domain information |
|---|
Score = 38.4 bits (89), Expect = 0.002
Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 39 ARIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96
I + G++ED + + ++ + + + + ++SPGG +AG AI+ I+ +K
Sbjct: 1 REIMLTGEVEDISANQFAAQLLFLGAVNPEKDIYLYINSPGGDVFAGMAIYDTIKFIK-- 58
Query: 97 KPVITEVHEMAASAGYLISCA 117
V+T + +AAS G +I+ A
Sbjct: 59 ADVVTIIDGLAASMGSVIAMA 79
|
Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP, although the proteolytic subunit alone does possess some catalytic activity. Active site consists of the triad Ser, His and Asp; some members have lost all of these active site residues and are therefore inactive, while others may have one or two large insertions. ClpP seems to prefer hydrophobic or non-polar residues at P1 or P1' positions in its substrate. The protease exists as a tetradecamer made up of two heptameric rings stacked back-to-back such that the catalytic triad of each subunit is located at the interface between three monomers, thus making oligomerization essential for function. Length = 162 |
| >gnl|CDD|184720 PRK14512, PRK14512, ATP-dependent Clp protease proteolytic subunit; Provisional | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 0.002
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
Query: 41 IAIRGQIEDSQELIERIER----ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96
I I G+I +++L E + + DS + V + S GG AG AIF I+ VK
Sbjct: 26 IVIAGEI--NKDLSELFQEKILLLEALDSKKPIFVYIDSEGGDIDAGFAIFNMIRFVK-- 81
Query: 97 KPVITEVHEMAASAGYLISCAS 118
V T + ASA LI A+
Sbjct: 82 PKVFTIGVGLVASAAALIFLAA 103
|
Length = 197 |
| >gnl|CDD|110924 pfam01972, SDH_sah, Serine dehydrogenase proteinase | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 7e-05
Identities = 42/141 (29%), Positives = 72/141 (51%), Gaps = 19/141 (13%)
Query: 47 IEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEM 106
IEDS+E++ I R++ D LI+ +PGG A A I +A+++ K + VI V
Sbjct: 75 IEDSEEILRAI-RLTPKDMPIDLIIH--TPGGLALAATQIAKALKEHKAKTTVI--VPHY 129
Query: 107 AASAGYLISCASNIIVAAETSLVGSIG-VLFQYPYVKPFLDKLGVSIKSV--KSSPMKAE 163
A S G LI+ A++ I+ E +++G + + QYP SI K P K +
Sbjct: 130 AMSGGTLIALAADEIIMDENAVLGPVDPQIGQYP---------AASILKAVEKKGPKKID 180
Query: 164 PSPF--SEVNPKAVQMMQDVV 182
++++ KA++ M++ V
Sbjct: 181 DQTLILADISKKAIKQMEEFV 201
|
This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan. Length = 286 |
| >gnl|CDD|144241 pfam00574, CLP_protease, Clp protease | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 9e-04
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 75 SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCA 117
SPGGS AG AI+ +Q +K V T +AAS G + A
Sbjct: 55 SPGGSVTAGLAIYDTMQFIKP--DVSTICLGLAASMGSFLLAA 95
|
The Clp protease has an active site catalytic triad. In E. coli Clp protease, ser-111, his-136 and asp-185 form the catalytic triad. A putative Clp protease from Cyanophora paradoxa has lost all of these active site residues and is therefore inactive. A member from Chlamydomonas eugametos contains two large insertions, a member from Chlamydomonas reinhardtii contains one large insertion. Length = 182 |
| >gnl|CDD|132928 cd07017, S14_ClpP_2, Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 0.001
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 73 LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCA 117
++SPGGS AG AI+ +Q +K PV T +AAS G L+ A
Sbjct: 46 INSPGGSVTAGLAIYDTMQYIKP--PVSTICLGLAASMGALLLAA 88
|
Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP, although the proteolytic subunit alone does possess some catalytic activity. Active site consists of the triad Ser, His and Asp; some members have lost all of these active site residues and are therefore inactive, while others may have one or two large insertions. ClpP seems to prefer hydrophobic or non-polar residues at P1 or P1' positions in its substrate. The protease exists as a tetradecamer made up of two heptameric rings stacked back-to-back such that the catalytic triad of each subunit is located at the interface between three monomers, thus making oligomerization essential for function. Length = 171 |
Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
| Identity | Alignment graph | Length | Definition | Probability |
| Target | 293 | putative protease IV transmembrane protein [Candidatus | ||
| TIGR00706 | 224 | SppA_dom signal peptide peptidase SppA, 36K type; Inter | 100.0 | |
| PRK10949 | 618 | protease 4; Provisional | 100.0 | |
| cd07022 | 214 | S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K | 100.0 | |
| TIGR00705 | 614 | SppA_67K signal peptide peptidase SppA, 67K type; Inter | 100.0 | |
| cd07023 | 208 | S49_Sppa_N_C Signal peptide peptidase A (SppA), a serin | 100.0 | |
| cd07019 | 211 | S49_SppA_1 Signal peptide peptidase A (SppA), a serine | 100.0 | |
| COG0616 | 317 | SppA Periplasmic serine proteases (ClpP class) [Posttra | 100.0 | |
| cd07018 | 222 | S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K | 100.0 | |
| cd07014 | 177 | S49_SppA Signal peptide peptidase A. Signal peptide pep | 100.0 | |
| cd00394 | 161 | Clp_protease_like Caseinolytic protease (ClpP) is an AT | 99.97 | |
| cd07016 | 160 | S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-depen | 99.87 | |
| cd07021 | 178 | Clp_protease_NfeD_like Nodulation formation efficiency | 99.87 | |
| cd07020 | 187 | Clp_protease_NfeD_1 Nodulation formation efficiency D ( | 99.85 | |
| cd07015 | 172 | Clp_protease_NfeD Nodulation formation efficiency D (Nf | 99.78 | |
| COG1030 | 436 | NfeD Membrane-bound serine protease (ClpP class) [Postt | 99.74 | |
| pfam00574 | 182 | CLP_protease Clp protease. The Clp protease has an acti | 99.68 | |
| cd07013 | 162 | S14_ClpP Caseinolytic protease (ClpP) is an ATP-depende | 99.68 | |
| COG0740 | 200 | ClpP Protease subunit of ATP-dependent Clp proteases [P | 99.67 | |
| PRK12553 | 204 | ATP-dependent Clp protease proteolytic subunit; Reviewe | 99.6 | |
| PRK00277 | 197 | clpP ATP-dependent Clp protease proteolytic subunit; Re | 99.6 | |
| CHL00028 | 201 | clpP ATP-dependent Clp protease proteolytic subunit | 99.59 | |
| PRK12551 | 196 | ATP-dependent Clp protease proteolytic subunit; Reviewe | 99.56 | |
| pfam01972 | 286 | SDH_sah Serine dehydrogenase proteinase. This family of | 99.41 | |
| PRK12552 | 222 | ATP-dependent Clp protease-like protein; Reviewed | 99.38 | |
| KOG0840 | 275 | consensus | 99.26 | |
| PRK05869 | 225 | enoyl-CoA hydratase; Validated | 99.19 | |
| PRK06495 | 257 | enoyl-CoA hydratase; Provisional | 99.19 | |
| PRK08138 | 260 | enoyl-CoA hydratase; Provisional | 99.19 | |
| PRK06688 | 263 | enoyl-CoA hydratase; Provisional | 99.17 | |
| PRK09674 | 257 | enoyl-CoA hydratase-isomerase; Provisional | 99.15 | |
| PRK07657 | 261 | enoyl-CoA hydratase; Provisional | 99.13 | |
| PRK07511 | 259 | enoyl-CoA hydratase; Provisional | 99.13 | |
| PRK07854 | 243 | enoyl-CoA hydratase; Provisional | 99.13 | |
| PRK07830 | 267 | consensus | 99.12 | |
| PRK06951 | 254 | consensus | 99.11 | |
| PRK09076 | 258 | enoyl-CoA hydratase; Provisional | 99.11 | |
| PRK07658 | 257 | enoyl-CoA hydratase; Provisional | 99.1 | |
| PRK06494 | 259 | enoyl-CoA hydratase; Provisional | 99.1 | |
| PRK05864 | 269 | enoyl-CoA hydratase; Provisional | 99.09 | |
| PRK06144 | 262 | enoyl-CoA hydratase; Provisional | 99.09 | |
| PRK06142 | 271 | enoyl-CoA hydratase; Provisional | 99.09 | |
| PRK05995 | 261 | enoyl-CoA hydratase; Provisional | 99.09 | |
| TIGR03210 | 256 | badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members o | 99.09 | |
| PRK07938 | 249 | enoyl-CoA hydratase; Provisional | 99.07 | |
| PRK07510 | 266 | consensus | 99.07 | |
| PRK08139 | 265 | enoyl-CoA hydratase; Validated | 99.06 | |
| PRK06210 | 272 | enoyl-CoA hydratase; Provisional | 99.06 | |
| PRK07110 | 257 | polyketide biosynthesis enoyl-CoA hydratase; Validated | 99.06 | |
| PRK09245 | 266 | enoyl-CoA hydratase; Provisional | 99.06 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex subun | 99.06 | |
| PRK05674 | 271 | gamma-carboxygeranoyl-CoA hydratase; Validated | 99.06 | |
| PRK06023 | 248 | enoyl-CoA hydratase; Provisional | 99.05 | |
| PRK05862 | 257 | enoyl-CoA hydratase; Provisional | 99.05 | |
| PRK06190 | 258 | enoyl-CoA hydratase; Provisional | 99.05 | |
| PRK05980 | 260 | enoyl-CoA hydratase; Provisional | 99.05 | |
| PRK03580 | 262 | carnitinyl-CoA dehydratase; Provisional | 99.04 | |
| PRK06143 | 260 | enoyl-CoA hydratase; Provisional | 99.04 | |
| PRK09120 | 277 | p-hydroxycinnamoyl CoA hydratase/lyase; Validated | 99.04 | |
| PRK11154 | 706 | fadJ multifunctional fatty acid oxidation complex subun | 99.04 | |
| PRK07629 | 261 | consensus | 99.04 | |
| PRK05809 | 260 | 3-hydroxybutyryl-CoA dehydratase; Validated | 99.04 | |
| cd06558 | 195 | crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydrata | 99.03 | |
| PRK05870 | 254 | enoyl-CoA hydratase; Provisional | 99.03 | |
| PRK07396 | 273 | naphthoate synthase; Validated | 99.02 | |
| PRK05981 | 266 | enoyl-CoA hydratase; Provisional | 99.02 | |
| PRK07260 | 260 | enoyl-CoA hydratase; Provisional | 99.02 | |
| PRK06563 | 255 | enoyl-CoA hydratase; Provisional | 99.01 | |
| PRK07509 | 262 | enoyl-CoA hydratase; Provisional | 99.01 | |
| PRK08260 | 293 | enoyl-CoA hydratase; Provisional | 99.01 | |
| PRK07799 | 263 | enoyl-CoA hydratase; Provisional | 99.0 | |
| PRK08272 | 308 | enoyl-CoA hydratase; Provisional | 99.0 | |
| PRK07327 | 271 | enoyl-CoA hydratase; Provisional | 99.0 | |
| PRK08290 | 284 | enoyl-CoA hydratase; Provisional | 99.0 | |
| PRK11423 | 261 | methylmalonyl-CoA decarboxylase; Provisional | 98.99 | |
| PRK07468 | 262 | enoyl-CoA hydratase; Provisional | 98.99 | |
| PRK06127 | 269 | enoyl-CoA hydratase; Provisional | 98.99 | |
| PRK12478 | 298 | enoyl-CoA hydratase; Provisional | 98.99 | |
| PRK08140 | 262 | enoyl-CoA hydratase; Provisional | 98.96 | |
| PRK07659 | 260 | enoyl-CoA hydratase; Provisional | 98.95 | |
| PRK08252 | 254 | enoyl-CoA hydratase; Provisional | 98.95 | |
| PRK08259 | 254 | enoyl-CoA hydratase; Provisional | 98.94 | |
| PRK08258 | 270 | enoyl-CoA hydratase; Provisional | 98.93 | |
| PRK08321 | 302 | naphthoate synthase; Validated | 98.92 | |
| PRK08150 | 264 | enoyl-CoA hydratase; Provisional | 98.87 | |
| TIGR03189 | 251 | dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydrata | 98.87 | |
| PRK07827 | 255 | enoyl-CoA hydratase; Provisional | 98.85 | |
| COG1024 | 257 | CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid met | 98.84 | |
| KOG1680 | 290 | consensus | 98.84 | |
| pfam00378 | 169 | ECH Enoyl-CoA hydratase/isomerase family. This family c | 98.74 | |
| PRK06213 | 229 | enoyl-CoA hydratase; Provisional | 98.67 | |
| PRK06072 | 240 | enoyl-CoA hydratase; Provisional | 98.66 | |
| PRK07112 | 251 | polyketide biosynthesis enoyl-CoA hydratase; Validated | 98.65 | |
| TIGR00493 | 192 | clpP ATP-dependent Clp protease, proteolytic subunit Cl | 98.36 | |
| TIGR02440 | 732 | FadJ fatty oxidation complex, alpha subunit FadJ; Inter | 97.81 | |
| KOG1681 | 292 | consensus | 97.79 | |
| PRK12319 | 256 | acetyl-CoA carboxylase subunit alpha; Provisional | 97.69 | |
| PRK05724 | 318 | acetyl-CoA carboxylase carboxyltransferase subunit alph | 97.58 | |
| CHL00198 | 322 | accA acetyl-CoA carboxylase carboxyltransferase alpha s | 97.5 | |
| COG0447 | 282 | MenB Dihydroxynaphthoic acid synthase [Coenzyme metabol | 97.46 | |
| TIGR02280 | 259 | PaaB1 phenylacetate degradation probable enoyl-CoA hydr | 97.45 | |
| KOG1679 | 291 | consensus | 97.15 | |
| PRK05654 | 288 | acetyl-CoA carboxylase subunit beta; Validated | 96.88 | |
| COG0825 | 317 | AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabo | 96.81 | |
| , MenB or dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Menaquinone (vitamin K2), is an essential quinone used in electron-transfer pathways serving as the major electron carrier during anaerobic growth. In the bacterium, the biosynthetic pathway in bacteria typically comprises 6-7 steps . Together with o-succinylbenzoate-CoA ligase (menE IPR010192 from INTERPRO),MenB takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoic acid (DHNA) , , , . The conversion of o-succinylbenzoate-CoA ligase to DHNA is mediated by the enzyme DHNA synthase, which is encoded by menB . The protein structure of naphthoate synthase has been expressed in Escherichia coli, purified and crystallized, and found to have fold characteristics of the crotonase family of enzymes, which is notable for the presence of several highly flexible regions around the active site. The C-terminal region of the protein may play a critical role both in completion of the binding pocket and in stabilisation of the hexamer, suggesting a link between oligomerization and catalytic activity . Included in this entry are two enzymes from Arabidopsis thaliana and one from Staphylococcus aureus, which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.; GO: 0008935 naphthoate synthase activity, 0009234 menaquinone biosynthetic process." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=TIGR01929">TIGR01929 | 278 | menB naphthoate synthase; InterPro: IPR010198 This entr | 96.57 | |
| ). It catalyzes the first step in the synthesis of long-chain fatty acids which involves the carboxylation of acetyl-CoA to malonyl-CoA. The acetyl-CoA carboxylase complex ( | 329 | accA acetyl-CoA carboxylase, carboxyl transferase, alph | 96.51 | |
| COG0777 | 294 | AccD Acetyl-CoA carboxylase beta subunit [Lipid metabol | 96.28 | |
| KOG0016 | 266 | consensus | 96.0 | |
| KOG1682 | 287 | consensus | 95.37 | |
| CHL00174 | 305 | accD acetyl-CoA carboxylase beta subunit; Reviewed | 95.03 | |
| TIGR00515 | 292 | accD acetyl-CoA carboxylase, carboxyl transferase, beta | 94.79 | |
| TIGR02437 | 716 | FadB fatty oxidation complex, alpha subunit FadB; Inter | 94.63 | |
| PRK10949 | 618 | protease 4; Provisional | 100.0 | |
| TIGR00705 | 614 | SppA_67K signal peptide peptidase SppA, 67K type; Inter | 100.0 | |
| PRK11778 | 317 | putative periplasmic protease; Provisional | 100.0 | |
| pfam01343 | 154 | Peptidase_S49 Peptidase family S49. | 100.0 | |
| PRK08788 | 286 | enoyl-CoA hydratase; Validated | 98.12 | |
| TIGR02441 | 740 | fa_ox_alpha_mit fatty acid oxidation complex, alpha sub | 98.31 | |
| PRK05617 | 356 | enoyl-CoA hydratase; Provisional | 98.19 | |
| PRK07189 | 302 | malonate decarboxylase subunit beta; Reviewed | 97.4 | |
| TIGR03133 | 274 | malonate_beta malonate decarboxylase, beta subunit. Mem | 97.19 | |
| TIGR03222 | 548 | benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presen | 97.12 | |
| TIGR03200 | 360 | dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrola | 97.01 | |
| pfam00549 | 128 | Ligase_CoA CoA-ligase. This family includes the CoA lig | 96.65 | |
| PRK08184 | 558 | enoyl-CoA hydratase; Provisional | 96.46 | |
| PTZ00187 | 309 | succinyl-CoA synthetase alpha subunit; Provisional | 96.45 | |
| COG0074 | 293 | SucD Succinyl-CoA synthetase, alpha subunit [Energy pro | 96.1 | |
| PRK05678 | 289 | succinyl-CoA synthetase subunit alpha; Validated | 95.58 | |
| COG0793 | 406 | Prc Periplasmic protease [Cell envelope biogenesis, out | 95.26 | |
| TIGR03134 | 238 | malonate_gamma malonate decarboxylase, gamma subunit. M | 95.05 | |
| pfam06833 | 234 | MdcE Malonate decarboxylase gamma subunit (MdcE). This | 94.69 | |
| pfam03572 | 166 | Peptidase_S41 Peptidase family S41. | 94.28 | |
| COG3904 | 245 | Predicted periplasmic protein [Function unknown] | 93.8 | |
| TIGR02717 | 457 | AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP formi | 92.86 | |
| pfam01039 | 487 | Carboxyl_trans Carboxyl transferase domain. All of the | 91.8 | |
| pfam08496 | 154 | Peptidase_S49_N Peptidase family S49 N-terminal. This d | 95.55 | |
| PRK11186 | 673 | carboxy-terminal protease; Provisional | 92.95 | |
| smart00245 | 192 | TSPc tail specific protease. tail specific protease | 93.64 | |
| pfam01740 | 106 | STAS STAS domain. The STAS (after Sulphate Transporter | 93.07 | |
| cd07560 | 211 | Peptidase_S41_CPP C-terminal processing peptidase; seri | 92.91 |
| >TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type; InterPro: IPR004635 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=420.79 Aligned_cols=206 Identities=34% Similarity=0.623 Sum_probs=201.0 Q ss_pred EEEEEEEEEEE--------------CCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCCEE Q ss_conf 28999976662--------------38699999999986189987999975888888899999999999841--478679 Q gi|254780747|r 37 HVARIAIRGQI--------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK--NRKPVI 100 (293) Q Consensus 37 ~i~~i~i~G~I--------------~~~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k--~~kpvv 100 (293) T Consensus 1 ~IA~~~v~G~I~~~~~~~~~~~~Dg~~~~~~~k~~~~~~~~~~~ka~~l~i~SPGG~V~~S~Eiy~~l~~~~k~~kkPVv 80 (224) T TIGR00706 1 KIASLEVTGAIASDAALSILLFSDGVSPEDVLKKIKRIKDDKSIKALVLRIDSPGGTVVASEEIYEKLKKLKKEAKKPVV 80 (224) T ss_pred CEEEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEE T ss_conf 93588841266303442101256899756799998877408970069998637999752268999999863453088589 Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHH Q ss_conf 96033233223210001110001301353455565302102456777420422553155211234666789999887777 Q gi|254780747|r 101 TEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180 (293) Q Consensus 101 a~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~ 180 (293) T Consensus 81 ~~~g~~aaSGGYYia~aa~~I~A~~~t~tGSIGVIl~~~n~~~L~~k~GI~~~~iK~G~yKd~~~~~R~lt~eE~~~lQ~ 160 (224) T TIGR00706 81 ASMGGVAASGGYYIAMAADEIVANPGTITGSIGVILQGANVEKLLEKLGIEFEAIKSGEYKDIGSPTRELTPEERKILQS 160 (224) T ss_pred EEECCCCHHHHHHHHHCCCEEEECCCCCEECHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHH T ss_conf 98368322679999813882463477420203755203579999986491565665166567898757762999999999 Q ss_pred HHHHHHHHHHHHHHHCCC--CCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCC Q ss_conf 766666778999985149--99889988734982378899877980623898999999997418 Q gi|254780747|r 181 VVDSSYHWFVRLVSESRN--IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 (293) Q Consensus 181 ~l~~~~~~f~~~Va~~R~--~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~~ 242 (293) T Consensus 161 ~v~~~Y~~F~~~V~~~R~nkl~~~~vK~~AdGRvf~GrqA~~l~LVD~lG~~d~A~~~l~~L~g 224 (224) T TIGR00706 161 LVNESYEQFVQVVAKGRNNKLSVEDVKKFADGRVFTGRQALKLRLVDKLGTLDDALKWLAKLAG 224 (224) T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCEECHHHHHHCCCEECCCCHHHHHHHHHHHCC T ss_conf 8888875789999984167789788765206860104334311460012898999999997449 |
They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. This group of sequences represent both long and short forms of the bacterial SppA and homologs found in the archaea and plants. Signal peptides of secretory proteins seem to serve at least two important biological functions. First, they are required for protein targeting to and translocation across membranes, such as the eubacterial plasma membrane and the endoplasmic reticular membrane of eukaryotes. Second, in addition to their role as determinants for protein targeting and translocation, certain signal peptides have a signaling function. During or shortly after pre-protein translocation, the signal peptide is removed by signal peptidases. The integral membrane protein, SppA (protease IV), of Escherichia coli was shown experimentally to degrade signal peptides. The member of this family from Bacillus subtilis has only been shown to be required for efficient processing of pre-proteins under conditions of hyper-secretion . ; GO: 0008233 peptidase activity, 0006508 proteolysis. |
| >PRK10949 protease 4; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=397.17 Aligned_cols=231 Identities=29% Similarity=0.448 Sum_probs=213.8 Q ss_pred CCCCCCEEEEEEEEEEECC---------HHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCCEE Q ss_conf 5677872899997666238---------699999999986189987999975888888899999999999841-478679 Q gi|254780747|r 31 VEDNSPHVARIAIRGQIED---------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVI 100 (293) Q Consensus 31 ~~~~~~~i~~i~i~G~I~~---------~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k-~~kpvv 100 (293) T Consensus 321 ~~~~~~~IAVI~a~G~Iv~G~~~~g~ig~dt~~~~lr~a~~D~~VKAvVLRVnSPGGSa~ASE~I~~el~~lk~~gKPVV 400 (618) T PRK10949 321 PADTGGQIAVIFANGAIMDGEETPGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVV 400 (618) T ss_pred CCCCCCEEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEE T ss_conf 88779838999968768548887886655899999999730867228999985899866789999999999984499799 Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHH Q ss_conf 96033233223210001110001301353455565302102456777420422553155211234666789999887777 Q gi|254780747|r 101 TEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQD 180 (293) Q Consensus 101 a~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~ 180 (293) T Consensus 401 vSMG~vAASGGYwIa~~Ad~I~A~p~TITGSIGVfg~~p~~~~~l~~lGI~~D~V~t~~~a~~-s~~~~l~~~~~~~~q~ 479 (618) T PRK10949 401 VSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLADV-SITKALPPEFQQMMQL 479 (618) T ss_pred EEECCCCCCCCEEEECCCCEEEECCCCEEEECEEEEEHHHHHHHHHHCCCEEEEEECCCCCCC-CCCCCCCHHHHHHHHH T ss_conf 997010156625885168769988986788640477610499999964952468854567778-8777999999999999 Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEECCCCCCHHH Q ss_conf 76666677899998514999889988734982378899877980623898999999997418776530120144211245 Q gi|254780747|r 181 VVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWF 260 (293) Q Consensus 181 ~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 260 (293) T Consensus 480 ~i~~~Y~~Fl~~Va~gR~mt~e~Vd~iAqGRVWsG~~A~~~GLVD~LGgl~dAI~~Aa~lA~l~~-y~v~~~~~~~s~~e 558 (618) T PRK10949 480 SIENGYKRFITLVADARHKTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKLKQ-WHLNWYVDEPTFFD 558 (618) T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCC-CEEEEECCCCCHHH T ss_conf 99999999999998657999899998648837769999986893654999999999999749985-06786179999999 Q ss_pred HHH Q ss_conf 565 Q gi|254780747|r 261 CDL 263 (293) Q Consensus 261 ~~~ 263 (293) T Consensus 559 ~~~ 561 (618) T PRK10949 559 MVM 561 (618) T ss_pred HHH T ss_conf 999 |
|
| >cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=381.07 Aligned_cols=201 Identities=28% Similarity=0.404 Sum_probs=193.9 Q ss_pred EEEEEEEEEEEC-------------CHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEE Q ss_conf 289999766623-------------8699999999986189987999975888888899999999999841478679960 Q gi|254780747|r 37 HVARIAIRGQIE-------------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV 103 (293) Q Consensus 37 ~i~~i~i~G~I~-------------~~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~ 103 (293) T Consensus 1 giAvI~i~G~i~~~~~~~~~~~g~~~~~~i~~~l~~A~~d~~vkaivL~InSPGG~~~~s~~i~~~I~~~~~~KPVva~~ 80 (214) T cd07022 1 GVAVIPVHGVLVPRGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDIDSPGGEVAGVFELADAIRAARAGKPIVAFV 80 (214) T ss_pred CEEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEE T ss_conf 97999989899369876555777558999999999995099975899999798976899999999999860899899998 Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 33233223210001110001301353455565302102456777420422553155211234666789999887777766 Q gi|254780747|r 104 HEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVD 183 (293) Q Consensus 104 ~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~ 183 (293) T Consensus 81 ~~~~aSggY~iAsaad~I~a~~~s~vGSIGv~~~~~~~~~ll~k~Gi~~~~~~sg~~K~~~~p~~~~s~e~~~~~q~~ld 160 (214) T cd07022 81 NGLAASAAYWIASAADRIVVTPTAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKVDGNPDEPLSDEARARLQAEVD 160 (214) T ss_pred CCCHHHHHHHHHHHCCCEEECCCCEEEEEEEEEECCCHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH T ss_conf 88115689999872570587776468764148861776888986795478740576332368756568899999999999 Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHH Q ss_conf 6667789999851499988998873498237889987798062389899999999 Q gi|254780747|r 184 SSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 (293) Q Consensus 184 ~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~ 238 (293) T Consensus 161 ~~~~~F~~~Va~~R~~~~~~~~~~-~G~v~~g~~A~~~GLVD~iG~~~dai~~la 214 (214) T cd07022 161 ALYAMFVAAVARNRGLSAAAVRAT-EGGVFRGQEAVAAGLADAVGTLDDALAALA 214 (214) T ss_pred HHHHHHHHHHHHHCCCCHHHHHHH-CCCEEEHHHHHHCCCCCCCCCHHHHHHHHC T ss_conf 999999999998579997788871-698988999998599754699999999749 |
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. |
| >TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type; InterPro: IPR004634 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=378.69 Aligned_cols=235 Identities=29% Similarity=0.491 Sum_probs=215.9 Q ss_pred CCCCCEEEEEEEEEEECC----------HHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-C-CCE Q ss_conf 677872899997666238----------6999999999861899879999758888888999999999998414-7-867 Q gi|254780747|r 32 EDNSPHVARIAIRGQIED----------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN-R-KPV 99 (293) Q Consensus 32 ~~~~~~i~~i~i~G~I~~----------~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~-~-kpv 99 (293) T Consensus 316 ~~~~~~iaiv~~~G~I~~G~~t~~nG~ggD~~a~lLr~a~~D~~iKAvvLRinSPGGsv~Ase~IR~e~~~~~~~GkKPV 395 (614) T TIGR00705 316 YDVDDKIAIVYLEGSIVDGRDTEENGVGGDTVAALLRKARSDPDIKAVVLRINSPGGSVFASEIIRRELERLQARGKKPV 395 (614) T ss_pred CCCCCCEEEEEEECCEECCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEHHHHHHHHHHHHHHCCCCCE T ss_conf 27988169997006423577566786003679999998707998128998863898634287899999999982689978 Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHH-HHHCCEEEEECCCCCCCCCCCCCCHHHHHHH Q ss_conf 996033233223210001110001301353455565302102456777-4204225531552112346667899998877 Q gi|254780747|r 100 ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDK-LGVSIKSVKSSPMKAEPSPFSEVNPKAVQMM 178 (293) Q Consensus 100 va~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k-~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~ 178 (293) T Consensus 396 ivSMG~~AASGgYWiasaA~yIvA~p~TiTGSIGvfsvl~t~En~~~~y~Gv~~D~V~t~~la~~GS~~~~~t~~~~~~~ 475 (614) T TIGR00705 396 IVSMGAMAASGGYWIASAADYIVADPNTITGSIGVFSVLPTVENSLDRYIGVHVDGVSTSELANVGSLLRPLTEEEQAIM 475 (614) T ss_pred EEECCHHHHCCCCHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCEECEEECCEEECCCCCCCCCCCCCCHHHHHHH T ss_conf 98435023205300204557133478743100144532522554231000223163342464463223477884788886 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCCCC-----CCCCEEECC Q ss_conf 777666667789999851499988998873498237889987798062389899999999741877-----653012014 Q gi|254780747|r 179 QDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ-----SIRKIKDWN 253 (293) Q Consensus 179 ~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~~~~-----~~~~~~~~~ 253 (293) T Consensus 476 Q~~v~~~Y~~FL~~Vs~aR~ls~~~vd~vAqG~vw~G~dA~~~GLVD~LG~l~~AVa~Aa~~~~~rqdtaV~q~~v~~y~ 555 (614) T TIGR00705 476 QLSVEAGYERFLEVVSKARNLSPTQVDKVAQGRVWTGEDAVKNGLVDELGGLDEAVAKAAKLAELRQDTAVKQWSVEVYK 555 (614) T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCEEEHHHHHHCCCEECCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEEE T ss_conf 33088899999999862303888899877568400015676638620268877899999999744776530111777860 Q ss_pred CCCCHHHHHHHHH Q ss_conf 4211245565110 Q gi|254780747|r 254 PPKNYWFCDLKNL 266 (293) Q Consensus 254 ~~~~~~~~~~~~~ 266 (293) T Consensus 556 ~~~~s~~~~ll~~ 568 (614) T TIGR00705 556 DEATSLISELLDN 568 (614) T ss_pred CCCCHHHHHHHHH T ss_conf 7863058889988 |
They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. Signal peptides of secretory proteins seem to serve at least two important biological functions. First, they are required for protein targeting to and translocation across membranes, such as the eubacterial plasma membrane and the endoplasmic reticular membrane of eukaryotes. Second, in addition to their role as determinants for protein targeting and translocation, certain signal peptides have a signalling function. During or shortly after pre-protein translocation, the signal peptide is removed by signal peptidases. The integral membrane protein, SppA (protease IV), of Escherichia coli was shown experimentally to degrade signal peptides. The member of this family from Bacillus subtilis has only been shown to be required for efficient processing of pre-proteins under conditions of hyper-secretion . These enzymes have a molecular mass around 67 kDa and a duplication such that the N-terminal half shares extensive homology with the C-terminal half and was shown in E. coli to form homotetramers. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both. ; GO: 0009003 signal peptidase activity, 0006465 signal peptide processing, 0016021 integral to membrane. |
| >cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=376.81 Aligned_cols=201 Identities=38% Similarity=0.669 Sum_probs=196.1 Q ss_pred EEEEEEEEEEEC-----CHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-CCCEEEEECCCCCCC Q ss_conf 289999766623-----86999999999861899879999758888888999999999998414-786799603323322 Q gi|254780747|r 37 HVARIAIRGQIE-----DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASA 110 (293) Q Consensus 37 ~i~~i~i~G~I~-----~~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~-~kpvva~~~~~~~S~ 110 (293) T Consensus 1 ~iavi~~~G~i~~~~~~~~~~i~~~l~~A~~d~~vk~ivL~idSpGG~~~~s~ei~~~i~~~k~~~KpV~a~~~~~aaSg 80 (208) T cd07023 1 KIAVIDIEGTISDGGGIGADSLIEQLRKAREDDSVKAVVLRINSPGGSVVASEEIYREIRRLRKAKKPVVASMGDVAASG 80 (208) T ss_pred CEEEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHCH T ss_conf 97999988788899986999999999999508997489999748996299999999999987514985999977711133 Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 32100011100013013534555653021024567774204225531552112346667899998877777666667789 Q gi|254780747|r 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190 (293) Q Consensus 111 ~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~ 190 (293) T Consensus 81 ~Y~lAs~ad~I~a~p~s~vGSIGv~~~~~~~~~~l~k~Gi~~~~~~~G~~K~~~~~~~~~s~e~~~~~~~~ld~~~~~F~ 160 (208) T cd07023 81 GYYIAAAADKIVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPDRPLTEEERAILQALVDDIYDQFV 160 (208) T ss_pred HHHHHHCCCEEEECCCCEECCCCEEEECCCHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 45655128779977876333200366326889999976970699952562334577778999999999999999999999 Q ss_pred HHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHH Q ss_conf 99985149998899887349823788998779806238989999999 Q gi|254780747|r 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237 (293) Q Consensus 191 ~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l 237 (293) T Consensus 161 ~~Va~~R~~~~~~v~~~~~g~v~~~~~A~~~GLiD~ig~~~eai~~~ 207 (208) T cd07023 161 DVVAEGRGMSGERLDKLADGRVWTGRQALELGLVDELGGLDDAIAKA 207 (208) T ss_pred HHHHHHCCCCHHHHHHHHCCCEEEHHHHHHCCCCCCCCCHHHHHHHH T ss_conf 99998669998999998579867099999869975339999999975 |
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad |
| >cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=369.84 Aligned_cols=201 Identities=30% Similarity=0.477 Sum_probs=192.8 Q ss_pred EEEEEEEEEEECC---------HHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-CCCEEEEECCC Q ss_conf 2899997666238---------6999999999861899879999758888888999999999998414-78679960332 Q gi|254780747|r 37 HVARIAIRGQIED---------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEM 106 (293) Q Consensus 37 ~i~~i~i~G~I~~---------~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~-~kpvva~~~~~ 106 (293) T Consensus 1 ~iaVi~~~G~I~~~~~~~~~~~~~~i~~~l~~A~~d~~Vkavvl~InSpGG~~~~s~~i~~~i~~~~~~~KPVva~~~~~ 80 (211) T cd07019 1 SIGVVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSAGGA 80 (211) T ss_pred CEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCC T ss_conf 98999988788379887887589999999999952899738999976969768999999999999864699799997784 Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 33223210001110001301353455565302102456777420422553155211234666789999887777766666 Q gi|254780747|r 107 AASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186 (293) Q Consensus 107 ~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~ 186 (293) T Consensus 81 aaSggY~iAsaad~I~a~p~s~vGSIGV~~~~~~~~~~~~k~Gi~~~~i~~~~~~~-~~~~~~lt~e~r~~~q~~vd~~~ 159 (211) T cd07019 81 AASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLAD-VSITRALPPEAQLGLQLSIENGY 159 (211) T ss_pred CCHHHHHHHHCCCEEEECCCCCEEEEEEEEEECCHHHHHHHCCEEEEEEECCCCCC-CCCCCCCCHHHHHHHHHHHHHHH T ss_conf 43488999855898998488735655689983376777774683578997456666-78889999999999999999999 Q ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHH Q ss_conf 7789999851499988998873498237889987798062389899999999 Q gi|254780747|r 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 (293) Q Consensus 187 ~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~ 238 (293) T Consensus 160 ~~F~~~Va~~R~~~~~~v~~~a~G~v~~g~~A~~~GLiD~ig~~~~ai~~aa 211 (211) T cd07019 160 KRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAA 211 (211) T ss_pred HHHHHHHHHHCCCCHHHHHHHCCCCEEEHHHHHHCCCCCCCCCHHHHHHHHC T ss_conf 9999999976799957837546855787899998699655699999999759 |
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te |
| >COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=359.47 Aligned_cols=212 Identities=33% Similarity=0.553 Sum_probs=203.1 Q ss_pred CCEEEEEEEEEEEC---------CHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECC Q ss_conf 87289999766623---------869999999998618998799997588888889999999999984147867996033 Q gi|254780747|r 35 SPHVARIAIRGQIE---------DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE 105 (293) Q Consensus 35 ~~~i~~i~i~G~I~---------~~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~ 105 (293) T Consensus 58 ~~~Iavi~~~G~I~~~~~~~~~~~~~~~~~~l~~~~~~~~vk~vvL~inSPGG~v~as~~i~~~l~~l~~~~PV~v~v~~ 137 (317) T COG0616 58 SKVIAVIHVEGAIVAGGGPLRFIGGDDIEEILRAARADPSVKAVVLRINSPGGSVVASELIARALKRLRAKKPVVVSVGG 137 (317) T ss_pred CCEEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEECC T ss_conf 85699997454653487763446677799999998508998738999989498468999999999987532989999887 Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 23322321000111000130135345556530210245677742042255315521123466678999988777776666 Q gi|254780747|r 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185 (293) Q Consensus 106 ~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~ 185 (293) T Consensus 138 ~AASGGY~IA~aAd~I~a~p~si~GSIGVi~~~~~~~~l~~k~Gv~~~~~~ag~~k~~~~~~~~~t~e~~~~~q~~~~e~ 217 (317) T COG0616 138 YAASGGYYIALAADKIVADPSSITGSIGVISGAPNFEELLEKLGVEKEVITAGEYKDILSPFRPLTEEEREILQKEIDET 217 (317) T ss_pred CCCCHHHHHHHCCCEEEECCCCCCCCCCEEEECCCHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHH T ss_conf 32028999984078798779860213501774566899998659860344232421114533336989999999999999 Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCC Q ss_conf 6778999985149998899887349823788998779806238989999999974187765 Q gi|254780747|r 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSI 246 (293) Q Consensus 186 ~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~~~~~~ 246 (293) T Consensus 218 y~~F~~~V~~~R~~~~~~~~~~a~g~v~~g~~A~~~gLVDelg~~~~av~~~~~~~~~~~~ 278 (317) T COG0616 218 YDEFVDKVAEGRGLSDEAVDKLATGRVWTGQQALELGLVDELGGLDDAVKDAAELAGVKDV 278 (317) T ss_pred HHHHHHHHHCCCCCCCHHHHHHHCCCEECHHHHCCCCCHHHHCCHHHHHHHHHHHCCCCCC T ss_conf 9999999972679970156787357686466624244427646788999999874366655 |
|
| >cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=352.07 Aligned_cols=190 Identities=24% Similarity=0.360 Sum_probs=182.1 Q ss_pred CHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCCCCCCCCCCCCCCHHH Q ss_conf 86999999999861899879999758888888999999999998414-78679960332332232100011100013013 Q gi|254780747|r 49 DSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETS 127 (293) Q Consensus 49 ~~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~-~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s 127 (293) T Consensus 30 ~l~~l~~~l~~A~~D~~ik~vvL~i~s~gg~~~~~~ei~~ai~~~k~~gKpVva~~~-~~~s~~Y~lAs~ad~I~a~p~~ 108 (222) T cd07018 30 SLRDLLEALEKAAEDDRIKGIVLDLDGLSGGLAKLEELRQALERFRASGKPVIAYAD-GYSQGQYYLASAADEIYLNPSG 108 (222) T ss_pred CHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEC-CCCCHHHHHHHHCCEEEECCCC T ss_conf 599999999998339996389996689997699999999999999860993999952-5661665887527855776887 Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH Q ss_conf 5345556530210245677742042255315521123466--67899998877777666667789999851499988998 Q gi|254780747|r 128 LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL 205 (293) Q Consensus 128 ~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~--~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~ 205 (293) T Consensus 109 ~vg~iGv~~~~~~~k~ll~klGi~~~~~~~G~yK~a~epf~~~~~s~e~re~~~~~l~~~~~~f~~~Va~~R~~~~~~~~ 188 (222) T cd07018 109 SVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQTQALLDSLWDQYLADVAASRGLSPDALE 188 (222) T ss_pred EEEEEEEEEECCCHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH T ss_conf 68776437542127889998698069984245466768655566589999999999999999999999964799989999 Q ss_pred HHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHH Q ss_conf 8734982378899877980623898999999997 Q gi|254780747|r 206 VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 (293) Q Consensus 206 ~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~ 239 (293) T Consensus 189 ~~~~~~~~~~~~A~~~GLVD~lg~~de~~~~l~~ 222 (222) T cd07018 189 ALIDLGGDSAEEALEAGLVDGLAYRDELEARLKE 222 (222) T ss_pred HHHHCCCCCHHHHHHCCCCCCCCCHHHHHHHHCC T ss_conf 9984798729999986997507989999998509 |
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys |
| >cd07014 S49_SppA Signal peptide peptidase A | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=293.77 Aligned_cols=162 Identities=31% Similarity=0.491 Sum_probs=149.9 Q ss_pred EEEEEEEECC-------------HHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCCEEEEECC Q ss_conf 9997666238-------------699999999986189987999975888888899999999999841-47867996033 Q gi|254780747|r 40 RIAIRGQIED-------------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVK-NRKPVITEVHE 105 (293) Q Consensus 40 ~i~i~G~I~~-------------~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k-~~kpvva~~~~ 105 (293) T Consensus 1 vi~~~G~I~~g~~~~~~~~g~~~~~~i~~~l~~a~~d~~vkaIvL~InSPGGs~~~s~~i~~~I~~~r~~~KPV~a~~~~ 80 (177) T cd07014 1 VVFANGVIVDGEESSSDTQGNVSGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVASGGG 80 (177) T ss_pred CEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECC T ss_conf 98999789768887888888716999999999995199962899996189818899999999999988659989999778 Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 23322321000111000130135345556530210245677742042255315521123466678999988777776666 Q gi|254780747|r 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185 (293) Q Consensus 106 ~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~ 185 (293) T Consensus 81 ~aASg~Y~iA~aad~I~a~p~s~vGSIGV~~~-------------------------------------~~~~q~~vd~~ 123 (177) T cd07014 81 NAASGGYWISTPANYIVANPSTLVGSIGIFGV-------------------------------------QLADQLSIENG 123 (177) T ss_pred CCCCHHHHHHHCCCEEEECCCCEEEEEEEEEE-------------------------------------HHHHHHHHHHH T ss_conf 56205778761278899869972776269866-------------------------------------68999999999 Q ss_pred HHHHHHHHHHCCCCCHHHH-HHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHH Q ss_conf 6778999985149998899-8873498237889987798062389899999999 Q gi|254780747|r 186 YHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 (293) Q Consensus 186 ~~~f~~~Va~~R~~~~~~~-~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~ 238 (293) T Consensus 124 ~~~Fv~~Va~~R~~~~~~~~~~~~~G~v~~g~~A~~~GLiD~iG~~~dai~~~A 177 (177) T cd07014 124 YKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGLVDSLGSFDDAVAKLA 177 (177) T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCCEEEHHHHHHCCCCCCCCCHHHHHHHHC T ss_conf 999999999747999678687606867788999998699765699999999759 |
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p |
| >cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=207.07 Aligned_cols=158 Identities=37% Similarity=0.482 Sum_probs=141.9 Q ss_pred EEEEEEEECC--HHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCC Q ss_conf 9997666238--69999999998618998799997588888889999999999984147867996033233223210001 Q gi|254780747|r 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCA 117 (293) Q Consensus 40 ~i~i~G~I~~--~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ 117 (293) T Consensus 1 ii~l~g~I~~~~a~~iv~~L~~l~~~~~~k~I~l~InSpGG~v~~~~~i~d~i~~~--~~~v~t~~~g~aaS~g~~i~~a 78 (161) T cd00394 1 VIFINGVIEDVSADQLAAQIRFAEADNSVKAIVLEVNTPGGRVDAGMNIVDALQAS--RKPVIAYVGGQAASAGYYIATA 78 (161) T ss_pred CEEECCEECHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHC--CCCEEEECCCCEEEHHHHHHHC T ss_conf 98966555789999999999999838999978999989998889999999999961--9999996687377604566515 Q ss_pred CCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 11000130135345556530210245677742042255315521123466678999988777776666677899998514 Q gi|254780747|r 118 SNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESR 197 (293) Q Consensus 118 ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R 197 (293) T Consensus 79 ~~~~~~~p~s~v~~h~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 130 (161) T cd00394 79 ANKIVMAPGTRVGSHGPIGGYG----------------------------GNGNPTAQEADQRIILYFIARFISLVAENR 130 (161) T ss_pred CCCCCCCCCCEEEEECCCCCCC----------------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 8853308874045525621478----------------------------889999999999999999999999999753 Q ss_pred CCCHHHHHH-HHCCCCCCHHHHHHCCCCCCC Q ss_conf 999889988-734982378899877980623 Q gi|254780747|r 198 NIPYDKTLV-LSDGRIWTGAEAKKVGLIDVV 227 (293) Q Consensus 198 ~~~~~~~~~-~~~g~~~~~~~A~~~GLvD~i 227 (293) T Consensus 131 g~~~~~i~~~~~~~~~lta~eA~e~GliD~I 161 (161) T cd00394 131 GQTTEKLEEDIEKDLVLTAQEALEYGLVDAL 161 (161) T ss_pred CCCHHHHHHHHCCCCEECHHHHHHCCCCCCC T ss_conf 9999999998507958849999986996409 |
Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec |
| >cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-21 Score=154.39 Aligned_cols=153 Identities=22% Similarity=0.368 Sum_probs=120.3 Q ss_pred EEEEEEEECCH-----HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC Q ss_conf 99976662386-----9999999998618998799997588888889999999999984147867996033233223210 Q gi|254780747|r 40 RIAIRGQIEDS-----QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLI 114 (293) Q Consensus 40 ~i~i~G~I~~~-----~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~i 114 (293) T Consensus 2 ~i~~~g~i~~~~~~~~~~~~~~L~~---~~~~k~I~l~INSpGG~v~~~~~I~d~i~~~--~~~V~t~~~G~aaS~g~~I 76 (160) T cd07016 2 EIYIYGDIGSDWGVTAKEFKDALDA---LGDDSDITVRINSPGGDVFAGLAIYNALKRH--KGKVTVKIDGLAASAASVI 76 (160) T ss_pred EEEEEEEECCCCCCCHHHHHHHHHH---CCCCCCEEEEEECCCCCHHHHHHHHHHHHHC--CCCEEEEEECHHHHHHHHH T ss_conf 6999955637768399999999982---7999997999989985899999999999867--9598999927077889999 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 00111000130135345556530210245677742042255315521123466678999988777776666677899998 Q gi|254780747|r 115 SCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVS 194 (293) Q Consensus 115 As~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va 194 (293) T Consensus 77 ~~ag~kr~~~~~s~im------iH~------------~s~~~~G~------------~~d~~~~~~~~~~~~~~~~~~~~ 126 (160) T cd07016 77 AMAGDEVEMPPNAMLM------IHN------------PSTGAAGN------------ADDLRKAADLLDKIDESIANAYA 126 (160) T ss_pred HHCCCEEEECHHHHHH------HCC------------CCCCCCCC------------HHHHHHHHHHHHHHHHHHHHHHH T ss_conf 8549859984578754------168------------66567878------------89999999999999999999999 Q ss_pred HCCCCCHHHHHHHHCCCCC-CHHHHHHCCCCCCC Q ss_conf 5149998899887349823-78899877980623 Q gi|254780747|r 195 ESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227 (293) Q Consensus 195 ~~R~~~~~~~~~~~~g~~~-~~~~A~~~GLvD~i 227 (293) T Consensus 127 ~~tg~~~~~i~~~~~~d~w~sa~EA~e~GliD~I 160 (160) T cd07016 127 EKTGLSEEEISALMDAETWLTAQEAVELGFADEI 160 (160) T ss_pred HHHCCCHHHHHHHHCCCEEECHHHHHHCCCCCCC T ss_conf 8819999999998659908439999984898729 |
Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a |
| >cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-21 Score=154.99 Aligned_cols=160 Identities=25% Similarity=0.315 Sum_probs=124.7 Q ss_pred EEEEEEEEEECCH--HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCC Q ss_conf 8999976662386--99999999986189987999975888888899999999999841478679960332332232100 Q gi|254780747|r 38 VARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLIS 115 (293) Q Consensus 38 i~~i~i~G~I~~~--~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iA 115 (293) T Consensus 1 Vyvi~i~g~I~~~~~~~l~r~l~~A~~-~~a~~ivl~idTpGG~v~~~~~I~~~I~~~--~~pvv~~V~~~AaSAG~~Ia 77 (178) T cd07021 1 VYVIPIEGEIDPGLAAFVERALKEAKE-EGADAVVLDIDTPGGRVDSALEIVDLILNS--PIPTIAYVNDRAASAGALIA 77 (178) T ss_pred CEEEEECCEECHHHHHHHHHHHHHHHH-CCCCEEEEEEECCCCCHHHHHHHHHHHHHC--CCCEEEEECCCHHHHHHHHH T ss_conf 989997356868899999999999996-899789999979998689999999999848--99999999992077999999 Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 01110001301353455565302102456777420422553155211234666789999887777766666778999985 Q gi|254780747|r 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 (293) Q Consensus 116 s~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~ 195 (293) T Consensus 78 ~aad~i~m~p~t~iG~a~Pv~~~g-------------------------~---~-------~~~~K~~s~~~a~~r~~Ae 122 (178) T cd07021 78 LAADEIYMAPGATIGAAEPIPGDG-------------------------N---G-------AADEKVQSYWRAKMRAAAE 122 (178) T ss_pred HHCCEEEECCCCCEECCCCCCCCC-------------------------C---C-------HHHHHHHHHHHHHHHHHHH T ss_conf 846700488998530154255888-------------------------6---3-------1467899999999999999 Q ss_pred CCCCCHHHHHHHHCCC--------------CCCHHHHHHCCCCCCCCC-HHHHHH Q ss_conf 1499988998873498--------------237889987798062389-899999 Q gi|254780747|r 196 SRNIPYDKTLVLSDGR--------------IWTGAEAKKVGLIDVVGG-QEEVWQ 235 (293) Q Consensus 196 ~R~~~~~~~~~~~~g~--------------~~~~~~A~~~GLvD~ig~-~~~a~~ 235 (293) T Consensus 123 ~~GRn~~~aeamV~~~~~v~~~~~~~g~~Ltlta~EAl~~g~~d~ia~~~~~Ll~ 177 (178) T cd07021 123 KKGRDPDIAEAMVDKDIEVPGVGIKGGELLTLTADEALKVGYAEGIAGSLDELLV 177 (178) T ss_pred HCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEECCHHHHHH T ss_conf 8399899999997514444211233455443589999973982788689999951 |
Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall |
| >cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-20 Score=148.67 Aligned_cols=169 Identities=26% Similarity=0.304 Sum_probs=129.9 Q ss_pred EEEEEEEEEECCH--HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEC---CCCCCCCC Q ss_conf 8999976662386--999999999861899879999758888888999999999998414786799603---32332232 Q gi|254780747|r 38 VARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVH---EMAASAGY 112 (293) Q Consensus 38 i~~i~i~G~I~~~--~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~---~~~~S~~Y 112 (293) T Consensus 1 V~vi~i~g~I~~~~~~~l~r~l~~A~~-~~a~avvl~idTpGG~v~~~~~I~~~i~--~s~vpvi~~V~p~G~~A~SAGa 77 (187) T cd07020 1 VYVLEINGAITPATADYLERAIDQAEE-GGADALIIELDTPGGLLDSTREIVQAIL--ASPVPVVVYVYPSGARAASAGT 77 (187) T ss_pred CEEEEECCEECHHHHHHHHHHHHHHHH-CCCCEEEEEEECCCCHHHHHHHHHHHHH--CCCCCEEEEECCCCCCHHHHHH T ss_conf 989996146768899999999999986-8998999998589607899999999998--1899989998789760771899 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 10001110001301353455565302102456777420422553155211234666789999887777766666778999 Q gi|254780747|r 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 (293) Q Consensus 113 ~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~ 192 (293) T Consensus 78 ~I~~a~~~~~MaPgt~iGaA~PV~~~~---------------------------~~~~~~----~~~~K~~n~~~a~~rs 126 (187) T cd07020 78 YILLAAHIAAMAPGTNIGAAHPVAIGG---------------------------GGGSDP----VMEKKILNDAVAYIRS 126 (187) T ss_pred HHHHHCCHHHCCCCCCEECCCCEECCC---------------------------CCCCCH----HHHHHHHHHHHHHHHH T ss_conf 999836075478987500144120689---------------------------887605----7899999999999999 Q ss_pred HHHCCCCCHHHHHH-HHCCCCCCHHHHHHCCCCCCCC-CHHHHHHHHHHH Q ss_conf 98514999889988-7349823788998779806238-989999999974 Q gi|254780747|r 193 VSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVG-GQEEVWQSLYAL 240 (293) Q Consensus 193 Va~~R~~~~~~~~~-~~~g~~~~~~~A~~~GLvD~ig-~~~~a~~~l~~~ 240 (293) T Consensus 127 ~Ae~rGRn~~~Ae~~V~e~~~lta~eAl~~gviD~ia~~~~eLL~~l~G~ 176 (187) T cd07020 127 LAELRGRNAEWAEKAVRESLSLTAEEALKLGVIDLIAADLNELLKKLDGR 176 (187) T ss_pred HHHHCCCCHHHHHHHHHHCCCCCHHHHHHCCCCEEEECCHHHHHHHCCCC T ss_conf 99983999899999876147668999997698178849999999876891 |
Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c |
| >cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.3e-18 Score=135.50 Aligned_cols=164 Identities=27% Similarity=0.347 Sum_probs=125.1 Q ss_pred EEEEEEEEEECCH--HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEE---CCCCCCCCC Q ss_conf 8999976662386--99999999986189987999975888888899999999999841478679960---332332232 Q gi|254780747|r 38 VARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEV---HEMAASAGY 112 (293) Q Consensus 38 i~~i~i~G~I~~~--~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~---~~~~~S~~Y 112 (293) T Consensus 1 Vyvi~i~g~I~~~~~~~l~r~l~~A~~~-~a~~vii~ldTPGG~~~a~~~I~~~i~--~s~vPv~~yV~P~g~~A~SAGa 77 (172) T cd07015 1 VYVAQIKGQITSYTYDQFDRYITIAEQD-NAEAIIIELDTPGGRADAAGNIVQRIQ--QSKIPVIIYVYPPGASAASAGT 77 (172) T ss_pred CEEEEECCEECHHHHHHHHHHHHHHHHC-CCCEEEEEEECCCCHHHHHHHHHHHHH--CCCCCEEEEEECCCCCHHHHHH T ss_conf 9899972678688999999999999977-998999998689628999999999998--2999989999479962676999 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 10001110001301353455565302102456777420422553155211234666789999887777766666778999 Q gi|254780747|r 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 (293) Q Consensus 113 ~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~ 192 (293) T Consensus 78 ~I~~aa~~~~MaPgt~iGaA~PV~~~-------------------g~---------~~~~~~---~~~K~~n~~~a~~rs 126 (172) T cd07015 78 YIALGSHLIAMAPGTSIGACRPILGY-------------------SQ---------NGSIIE---APPKITNYFIAYIKS 126 (172) T ss_pred HHHHHCCHHEECCCCCCCCCCEEECC-------------------CC---------CCCCCC---CCHHHHHHHHHHHHH T ss_conf 99985543206799874357632068-------------------98---------888665---547789999999999 Q ss_pred HHHCCCCCHHHHHH-HHCCCCCCHHHHHHCCCCCCCCC-HHHHHH Q ss_conf 98514999889988-73498237889987798062389-899999 Q gi|254780747|r 193 VSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVGG-QEEVWQ 235 (293) Q Consensus 193 Va~~R~~~~~~~~~-~~~g~~~~~~~A~~~GLvD~ig~-~~~a~~ 235 (293) T Consensus 127 ~Ae~rGRn~~~ae~~V~e~~slta~eAl~~gviD~iA~~~~eLL~ 171 (172) T cd07015 127 LAQESGRNATIAEEFITKDLSLTPEEALKYGVIEVVARDINELLK 171 (172) T ss_pred HHHHCCCCHHHHHHHHHHHCCCCHHHHHHCCCCEEEECCHHHHHH T ss_conf 999859988999999874247599999976981788599999950 |
Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle |
| >COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.74 E-value=8e-16 Score=119.54 Aligned_cols=173 Identities=25% Similarity=0.294 Sum_probs=132.4 Q ss_pred CCCCCCEEEEEEEEEEECCH--HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECC--- Q ss_conf 56778728999976662386--9999999998618998799997588888889999999999984147867996033--- Q gi|254780747|r 31 VEDNSPHVARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHE--- 105 (293) Q Consensus 31 ~~~~~~~i~~i~i~G~I~~~--~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~--- 105 (293) T Consensus 21 ~~~~~~~v~vi~i~g~I~~~s~~~l~r~l~~A~~-~~a~~vvl~ldTPGGl~~sm~~iv~~i~--~s~vPV~~yv~p~ga 97 (436) T COG1030 21 VATAEKKVYVIEIDGAIDPASADYLQRALQSAEE-ENAAAVVLELDTPGGLLDSMRQIVRAIL--NSPVPVIGYVVPDGA 97 (436) T ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHH-CCCCEEEEEECCCCCHHHHHHHHHHHHH--CCCCCEEEEECCCCC T ss_conf 1256771899992574277799999999999985-7984799996089726799999999987--599977999948985 Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 23322321000111000130135345556530210245677742042255315521123466678999988777776666 Q gi|254780747|r 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185 (293) Q Consensus 106 ~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~ 185 (293) T Consensus 98 ~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~------------------------------g~~~~~~~-----~~n~ 142 (436) T COG1030 98 RAASAGTYILMATHIAAMAPGTNIGAATPIAGG------------------------------GTSAKEAN-----TTNA 142 (436) T ss_pred CHHCHHHHHHHHCCHHHHCCCCCCCCCCEECCC------------------------------CCCCCCHH-----HHHH T ss_conf 110403279885676551798743546502479------------------------------98855014-----3789 Q ss_pred HHHHHHHHHHCCCCCHHHHHHHH-CCCCCCHHHHHHCCCCCCCCC-HHHHHHHHHHHC Q ss_conf 67789999851499988998873-498237889987798062389-899999999741 Q gi|254780747|r 186 YHWFVRLVSESRNIPYDKTLVLS-DGRIWTGAEAKKVGLIDVVGG-QEEVWQSLYALG 241 (293) Q Consensus 186 ~~~f~~~Va~~R~~~~~~~~~~~-~g~~~~~~~A~~~GLvD~ig~-~~~a~~~l~~~~ 241 (293) T Consensus 143 ~~ay~~~~A~~~gRN~~~ae~~v~~~~~l~a~eA~~~~vid~iA~~~~ell~~~~g~~ 200 (436) T COG1030 143 AVAYIRSLAEERGRNPTWAERFVTENLSLTAEEALRQGVIDLIARDLNELLKKLDGRS 200 (436) T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCHHHHHHHCCCCC T ss_conf 9999999999839986999998642157786679855940035587899998704775 |
|
| >pfam00574 CLP_protease Clp protease | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.5e-15 Score=117.87 Aligned_cols=158 Identities=23% Similarity=0.278 Sum_probs=119.1 Q ss_pred EEEEEEEECC--HHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCC Q ss_conf 9997666238--69999999998618998799997588888889999999999984147867996033233223210001 Q gi|254780747|r 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCA 117 (293) Q Consensus 40 ~i~i~G~I~~--~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ 117 (293) T Consensus 18 ii~l~~~i~~~~a~~~i~~l~~L~~e~~~~~I~l~INS~GG~v~~g~aI~d~i~~~~--~~V~Ti~~G~aaS~aslI~~a 95 (182) T pfam00574 18 IIFLGGEIDDEVANLIIAQLLFLESEDPDKDIYLYINSPGGSVTAGLAIYDTMQFIK--PDVSTICLGLAASMGSFLLAA 95 (182) T ss_pred EEEECCEECHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCC--CCCEEEEEEEEECCCCCHHHC T ss_conf 899898436899999999999985629699989999899967899999999998479--984899920361455320102 Q ss_pred CC--CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 11--0001301353455565302102456777420422553155211234666789999887777766666778999985 Q gi|254780747|r 118 SN--IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 (293) Q Consensus 118 ad--~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~ 195 (293) T Consensus 96 G~~g~R~~~p~s~~M------iHq------------~~~~~~G------------~~~di~~~~~~l~~~~~~i~~~ya~ 145 (182) T pfam00574 96 GTKGKRFALPNARIM------IHQ------------PLGGAQG------------QASDIEIQAEEILKIRERLNEIYAE 145 (182) T ss_pred CCCCCEEECCCCCEE------EEC------------CCCCCCC------------CHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 677744456570102------563------------6546664------------8999999999999999999999998 Q ss_pred CCCCCHHHHHHHHCCC-CCCHHHHHHCCCCCCCCC Q ss_conf 1499988998873498-237889987798062389 Q gi|254780747|r 196 SRNIPYDKTLVLSDGR-IWTGAEAKKVGLIDVVGG 229 (293) Q Consensus 196 ~R~~~~~~~~~~~~g~-~~~~~~A~~~GLvD~ig~ 229 (293) T Consensus 146 ~tg~~~~~i~~~~~~d~~lta~EA~~~GliD~Ii~ 180 (182) T pfam00574 146 HTGQPLEKIEKDLDRDTFMSAEEAKEYGLIDEVIE 180 (182) T ss_pred HHCCCHHHHHHHHCCCCCCCHHHHHHCCCCCEECC T ss_conf 86949999999850783246999998399868505 |
The Clp protease has an active site catalytic triad. In E. coli Clp protease, ser-111, his-136 and asp-185 form the catalytic triad. A putative Clp protease from Cyanophora paradoxa has lost all of these active site residues and is therefore inactive. A member from Chlamydomonas eugametos contains two large insertions, a member from Chlamydomonas reinhardtii contains one large insertion. |
| >cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.7e-15 Score=117.54 Aligned_cols=156 Identities=18% Similarity=0.256 Sum_probs=117.2 Q ss_pred EEEEEEEECC--HHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCC Q ss_conf 9997666238--69999999998618998799997588888889999999999984147867996033233223210001 Q gi|254780747|r 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCA 117 (293) Q Consensus 40 ~i~i~G~I~~--~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ 117 (293) T Consensus 2 ii~l~~~i~~~~a~~~i~~ll~L~~~~~~k~I~l~INS~GG~v~~g~aI~d~i~~~~--~~v~tv~~G~aaS~as~i~~a 79 (162) T cd07013 2 EIMLTGEVEDISANQFAAQLLFLGAVNPEKDIYLYINSPGGDVFAGMAIYDTIKFIK--ADVVTIIDGLAASMGSVIAMA 79 (162) T ss_pred EEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCC--CCEEEEEECHHHHHHHHHHHC T ss_conf 899888017899999999999972629799989999799857999999999998479--998999630465165899973 Q ss_pred CC--CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 11--0001301353455565302102456777420422553155211234666789999887777766666778999985 Q gi|254780747|r 118 SN--IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 (293) Q Consensus 118 ad--~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~ 195 (293) T Consensus 80 G~~g~R~~~~~s~~Mi------Hq~~~---------------g--------~~-G~~~di~~~~~~l~~~~~~i~~i~a~ 129 (162) T cd07013 80 GAKGKRFILPNAMMMI------HQPWG---------------G--------TL-GDATDMRIYADLLLKVEGNLVSAYAH 129 (162) T ss_pred CCCCCCEECCCHHHHH------HCCCC---------------C--------CC-CCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 7888817676689988------06345---------------6--------57-79999999999999999999999999 Q ss_pred CCCCCHHHHHHHHCCC-CCCHHHHHHCCCCCCC Q ss_conf 1499988998873498-2378899877980623 Q gi|254780747|r 196 SRNIPYDKTLVLSDGR-IWTGAEAKKVGLIDVV 227 (293) Q Consensus 196 ~R~~~~~~~~~~~~g~-~~~~~~A~~~GLvD~i 227 (293) T Consensus 130 ~tg~~~e~i~~~~~~d~~lsa~EA~~yGliD~I 162 (162) T cd07013 130 KTGQSEEELHADLERDTWLSAREAVEYGFADTI 162 (162) T ss_pred HHCCCHHHHHHHCCCCCCCCHHHHHHCCCCCCC T ss_conf 889099999986148823669999985998809 |
Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas |
| >COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.5e-16 Score=119.07 Aligned_cols=162 Identities=23% Similarity=0.263 Sum_probs=124.2 Q ss_pred EEEEEEECCH--HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCC Q ss_conf 9976662386--99999999986189987999975888888899999999999841478679960332332232100011 Q gi|254780747|r 41 IAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS 118 (293) Q Consensus 41 i~i~G~I~~~--~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~a 118 (293) T Consensus 30 I~l~g~I~~~~a~~i~aqll~Lea~~~~k~I~lyINSpGG~V~aG~AIydtm~~i--k~~V~ti~~G~AaSmgs~l~~aG 107 (200) T COG0740 30 IFLGGEIEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGLAIYDTMQFI--KPPVSTICMGQAASMGSVLLMAG 107 (200) T ss_pred EEEEEEECHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHC--CCCEEEEEECHHHHHHHHHHHCC T ss_conf 9996422507788899999999833998986999968996610569999999855--99869997467876899999658 Q ss_pred CCC--CCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 100--013013534555653021024567774204225531552112346667899998877777666667789999851 Q gi|254780747|r 119 NII--VAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 (293) Q Consensus 119 d~I--~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~ 196 (293) T Consensus 108 ~~g~r~~lPnsrim------IHqP~----------------gg-------~~-G~a~Di~i~A~ei~~~~~~l~~i~a~~ 157 (200) T COG0740 108 DKGKRFALPNARIM------IHQPS----------------GG-------AQ-GQASDIEIHAREILKIKERLNRIYAEH 157 (200) T ss_pred CCCCCEECCCCEEE------EECCC----------------CC-------CC-CCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 87871367864389------86687----------------56-------76-678799999999999999999999988 Q ss_pred CCCCHHHHHHHHC-CCCCCHHHHHHCCCCCCCCCHHHHH Q ss_conf 4999889988734-9823788998779806238989999 Q gi|254780747|r 197 RNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVVGGQEEVW 234 (293) Q Consensus 197 R~~~~~~~~~~~~-g~~~~~~~A~~~GLvD~ig~~~~a~ 234 (293) T Consensus 158 TGq~~e~i~~d~drd~~msa~eA~~yGLiD~V~~~~~~~ 196 (200) T COG0740 158 TGQTLEKIEKDTDRDTWMSAEEAKEYGLIDKVIESREAA 196 (200) T ss_pred HCCCHHHHHHHHCCCCCCCHHHHHHCCCCCEECCCCCCC T ss_conf 099889999861234457999999748855321333212 |
|
| >PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.5e-14 Score=109.18 Aligned_cols=162 Identities=23% Similarity=0.304 Sum_probs=118.6 Q ss_pred EEEEEEEECCH--HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCC Q ss_conf 99976662386--9999999998618998799997588888889999999999984147867996033233223210001 Q gi|254780747|r 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCA 117 (293) Q Consensus 40 ~i~i~G~I~~~--~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ 117 (293) T Consensus 34 iifl~~~i~~~~a~~iia~ll~L~~~~~~kpI~lyINSpGG~v~~glaIyD~m~~~~--~~V~Ti~~G~aaS~aslil~a 111 (204) T PRK12553 34 IIFLGGQVDDASANDVMAQLLVLESIDPDRPITMYINSPGGSVTSGDAIYDTIQFVR--PDVQTVGTGQAASAGAVLLAA 111 (204) T ss_pred EEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCC--CCEEEEEEEEHHHHHHHHHHC T ss_conf 899888338899999999999974739599989999799855768999999999569--984999974755568899961 Q ss_pred CC--CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 11--0001301353455565302102456777420422553155211234666789999887777766666778999985 Q gi|254780747|r 118 SN--IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 (293) Q Consensus 118 ad--~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~ 195 (293) T Consensus 112 G~kgkR~a~pns~iMi-----HqP~~---------------~gg-------~~-G~a~di~i~a~ei~~~~~~i~~iya~ 163 (204) T PRK12553 112 GTPGKRFALPNTRFLI-----HQPSL---------------GGG-------IQ-GQASDLEIQAREILRMRERLERTLAE 163 (204) T ss_pred CCCCCEEECCCCEEEE-----CCCCC---------------CCC-------CC-CCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 7746646368874677-----37653---------------478-------65-55768999999999999999999998 Q ss_pred CCCCCHHHHHHHHC-CCCCCHHHHHHCCCCCCCCCHH Q ss_conf 14999889988734-9823788998779806238989 Q gi|254780747|r 196 SRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVVGGQE 231 (293) Q Consensus 196 ~R~~~~~~~~~~~~-g~~~~~~~A~~~GLvD~ig~~~ 231 (293) T Consensus 164 ~Tg~~~e~i~~~~~rd~~msa~EA~eyGliD~Ii~~~ 200 (204) T PRK12553 164 ATGQPREKIRKDTDRDKWLTAEEAKDYGLVDQILTSR 200 (204) T ss_pred HHCCCHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCH T ss_conf 8697999999872478515799999819997871632 |
|
| >PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=5e-14 Score=108.22 Aligned_cols=159 Identities=24% Similarity=0.300 Sum_probs=118.1 Q ss_pred EEEEEEEECC--HHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCC Q ss_conf 9997666238--69999999998618998799997588888889999999999984147867996033233223210001 Q gi|254780747|r 40 RIAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCA 117 (293) Q Consensus 40 ~i~i~G~I~~--~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ 117 (293) T Consensus 29 iifl~~~i~~~~a~~iia~llyL~~~~~~kpI~lyINSpGG~v~~glaIyD~m~~~~--~~V~Tv~~G~aaS~aslIl~a 106 (197) T PRK00277 29 IIFLGGEVEDHMANLIVAQLLFLEAEDPTKDIYLYINSPGGSVTAGMAIYDTMQFIK--PDVSTICMGQAASMGAFLLAA 106 (197) T ss_pred EEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCC--CCEEEEEEEEECCCCCHHHHC T ss_conf 899898107899999999999864619699989999799866878999999997179--973999874600210257760 Q ss_pred CC--CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 11--0001301353455565302102456777420422553155211234666789999887777766666778999985 Q gi|254780747|r 118 SN--IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 (293) Q Consensus 118 ad--~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~ 195 (293) T Consensus 107 G~kgkR~~~pns~iMiH-----qp----------------~~g--------~~-G~a~di~~~a~el~~~~~~i~~iya~ 156 (197) T PRK00277 107 GTKGKRFALPNSRIMIH-----QP----------------LGG--------FQ-GQATDIEIHAREILKIKKRLNEILAE 156 (197) T ss_pred CCCCCEEECCCHHHHHC-----CC----------------CCC--------CC-CCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 78663422604466631-----46----------------546--------67-77999999999999999999999999 Q ss_pred CCCCCHHHHHHHHCCC-CCCHHHHHHCCCCCCCCCH Q ss_conf 1499988998873498-2378899877980623898 Q gi|254780747|r 196 SRNIPYDKTLVLSDGR-IWTGAEAKKVGLIDVVGGQ 230 (293) Q Consensus 196 ~R~~~~~~~~~~~~g~-~~~~~~A~~~GLvD~ig~~ 230 (293) T Consensus 157 ~Tg~~~~~i~~~~~rd~~msa~EA~~yGliD~Il~~ 192 (197) T PRK00277 157 HTGQSLEKIEKDTDRDNFMSAEEAKEYGLIDKVITK 192 (197) T ss_pred HHCCCHHHHHHHCCCCEECCHHHHHHHCCCCEEECC T ss_conf 879399999986247802469999980999788141 |
|
| >CHL00028 clpP ATP-dependent Clp protease proteolytic subunit | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.9e-14 Score=107.35 Aligned_cols=160 Identities=24% Similarity=0.264 Sum_probs=118.1 Q ss_pred EEEEEEEECCH--HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCC Q ss_conf 99976662386--9999999998618998799997588888889999999999984147867996033233223210001 Q gi|254780747|r 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCA 117 (293) Q Consensus 40 ~i~i~G~I~~~--~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ 117 (293) T Consensus 32 iifl~~~i~~~~a~~iia~ll~L~~e~~~kpI~lyINSpGG~v~~glaIyD~m~~~~--~~V~Ti~~G~AaS~aslilaa 109 (201) T CHL00028 32 LLFLGQELDDEIANQLIGLMVYLSIEDDTKDLYLFINSPGGSVISGIAIYDTMQFVK--PDVHTICLGLAASMGSFILAG 109 (201) T ss_pred EEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCC--CCEEEEEEEHHCCHHHHHHHC T ss_conf 899898017899999999999972649799989999899854868999999998559--995899760010536788614 Q ss_pred CC--CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 11--0001301353455565302102456777420422553155211234666789999887777766666778999985 Q gi|254780747|r 118 SN--IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 (293) Q Consensus 118 ad--~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~ 195 (293) T Consensus 110 G~kgkR~~~pns~iMIH-----qp----------------~~g~-------~-~G~a~di~~~a~el~~~~~~i~~iya~ 160 (201) T CHL00028 110 GEITKRLAFPHARVMIH-----QP----------------ASSF-------Y-EGQASEFVLEAEELLKLRETLTRVYVQ 160 (201) T ss_pred CCCCCEEECCCHHHHEE-----CC----------------CCCC-------C-CCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 88763562658556124-----45----------------4676-------7-897899999999999999999999998 Q ss_pred CCCCCHHHHHHHHCCC-CCCHHHHHHCCCCCCCCCH Q ss_conf 1499988998873498-2378899877980623898 Q gi|254780747|r 196 SRNIPYDKTLVLSDGR-IWTGAEAKKVGLIDVVGGQ 230 (293) Q Consensus 196 ~R~~~~~~~~~~~~g~-~~~~~~A~~~GLvD~ig~~ 230 (293) T Consensus 161 ~Tg~~~~~I~~~~~rd~~msa~EA~~yGliD~Il~~ 196 (201) T CHL00028 161 RTGKPLWVISEDMERDVFMSATEAKAYGIVDLVAVE 196 (201) T ss_pred HHCCCHHHHHHHHCCCCCCCHHHHHHCCCCCEECCC T ss_conf 879599999987157842679999981998888257 |
|
| >PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.4e-14 Score=106.50 Aligned_cols=160 Identities=23% Similarity=0.302 Sum_probs=116.8 Q ss_pred EEEEEEEECCH--HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCC Q ss_conf 99976662386--9999999998618998799997588888889999999999984147867996033233223210001 Q gi|254780747|r 40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCA 117 (293) Q Consensus 40 ~i~i~G~I~~~--~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ 117 (293) T Consensus 27 iifl~~~i~~~~a~~ii~~ll~L~~e~~~k~I~lyINSpGG~v~~glaIyD~m~~~~--~~V~Ti~~G~aaS~as~il~a 104 (196) T PRK12551 27 IIFLGEPVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDGLGIFDTMQHVK--PDVHTVCVGLAASMGAFLLCA 104 (196) T ss_pred EEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCC--CCEEEEEEEEEHHHHHHHHHC T ss_conf 899898127899999999999860729799979999799866655699999996269--997999962402256789974 Q ss_pred CC--CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 11--0001301353455565302102456777420422553155211234666789999887777766666778999985 Q gi|254780747|r 118 SN--IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 (293) Q Consensus 118 ad--~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~ 195 (293) T Consensus 105 G~kgkR~~~pns~iMIH-----qp----------------~~~--------~~-G~a~di~~~a~el~~~~~~i~~i~a~ 154 (196) T PRK12551 105 GAKGKRSSLQHSRIMIH-----QP----------------LGG--------AR-GQASDIRIQADEILFLKERLNTELSE 154 (196) T ss_pred CCCCCCCCCCCCEEEEC-----CC----------------CCC--------CC-CCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 88886012656024770-----56----------------767--------56-75879999999999999999999999 Q ss_pred CCCCCHHHHHHHHCCC-CCCHHHHHHCCCCCCCCCHH Q ss_conf 1499988998873498-23788998779806238989 Q gi|254780747|r 196 SRNIPYDKTLVLSDGR-IWTGAEAKKVGLIDVVGGQE 231 (293) Q Consensus 196 ~R~~~~~~~~~~~~g~-~~~~~~A~~~GLvD~ig~~~ 231 (293) T Consensus 155 ~Tg~~~~~I~~~~~rd~~msa~EA~~yGliD~Il~~r 191 (196) T PRK12551 155 RTGQPLERIQEDTDRDFFMSPSEAVEYGLIDLVIDKR 191 (196) T ss_pred HHCCCHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCC T ss_conf 8795999999873578606799999829987860789 |
|
| >pfam01972 SDH_sah Serine dehydrogenase proteinase | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.4e-11 Score=92.87 Aligned_cols=188 Identities=24% Similarity=0.308 Sum_probs=119.3 Q ss_pred CCCCEEEEEEEEEEE-------------CCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCE Q ss_conf 778728999976662-------------3869999999998618998799997588888889999999999984147867 Q gi|254780747|r 33 DNSPHVARIAIRGQI-------------EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV 99 (293) Q Consensus 33 ~~~~~i~~i~i~G~I-------------~~~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpv 99 (293) T Consensus 48 r~srVItlIHRQE~is~lGiP~~ryI~ieDSE~VLRAIr~Tp~d~---PIDlIlHTPGGlvLAa~QIA~AL~~H--~akv 122 (286) T pfam01972 48 RGSRVITMIHRQESIGFLGIPIYKFITIEDSEEILRAIRLTPKDM---PIDLIIHTPGGLALAATQIAKALKEH--KAKT 122 (286) T ss_pred HCCEEEEEEEHHHHHHHCCCCHHHCCCHHHHHHHHHHHHCCCCCC---CEEEEEECCCHHHHHHHHHHHHHHHC--CCCE T ss_conf 388699985201246543852743226232899999997599999---85799857961689999999999958--9973 Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-HCCCHH--HHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHH Q ss_conf 996033233223210001110001301353455565-302102--45677742042255315521123466678999988 Q gi|254780747|r 100 ITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL-FQYPYV--KPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176 (293) Q Consensus 100 va~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~-~~~~~~--~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~ 176 (293) T Consensus 123 tV~VPHYAMSGGTlIALAADEIvMd~nAVLGPvDPQlG~~PAaSIl~v~e~K~~~~----------idD~TLIlaDva~K 192 (286) T pfam01972 123 TVIVPHYAMSGGTLIALAADEIIMDENAVLGPVDPQIGQYPAASILKAVEKKGPKK----------IDDQTLILADISKK 192 (286) T ss_pred EEEEECCCCCCCEEEEEECCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC----------CCCHHHHHHHHHHH T ss_conf 99950310567420321066055677655588782026876799999997479131----------46400127888999 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH----CCC-----CCCHHHHHHCCCCCCCCCHHHHHH--HHHHHC Q ss_conf 77777666667789999851499988998873----498-----237889987798062389899999--999741 Q gi|254780747|r 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLS----DGR-----IWTGAEAKKVGLIDVVGGQEEVWQ--SLYALG 241 (293) Q Consensus 177 ~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~----~g~-----~~~~~~A~~~GLvD~ig~~~~a~~--~l~~~~ 241 (293) T Consensus 193 Ai~Qv~~~v~-----~LL~~-k~~eeka~~ia~~L~~G~wTHDyPit~e~ak~lGl~V~t~~P~evy~LM~LypQp 262 (286) T pfam01972 193 AIKQMEEFVY-----NLLKD-KYGEEKAKEIAKILTEGRWTHDYPLTVEELKELGLEVNTNVPEEVYELMELYPQP 262 (286) T ss_pred HHHHHHHHHH-----HHHHC-CCCHHHHHHHHHHHHCCCEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHCCCC T ss_conf 9999999999-----99874-3888999999999806844178888999999859966689989999999847787 |
This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan. |
| >PRK12552 ATP-dependent Clp protease-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.2e-12 Score=94.64 Aligned_cols=158 Identities=20% Similarity=0.152 Sum_probs=109.3 Q ss_pred EEEEEEEECCHH------------HHHHHHHHHHCCCCCCEEEEECCCCC---------CCHHHHHHHHHHHHHHCCCCC Q ss_conf 999766623869------------99999999861899879999758888---------888999999999998414786 Q gi|254780747|r 40 RIAIRGQIEDSQ------------ELIERIERISRDDSATALIVSLSSPG---------GSAYAGEAIFRAIQKVKNRKP 98 (293) Q Consensus 40 ~i~i~G~I~~~~------------~l~~~l~~a~~d~~ik~ivL~i~SpG---------G~~~~~~~i~~ai~~~k~~kp 98 (293) T Consensus 32 Iiflg~pi~~~d~~~~~~~~~vanliiAqLL~L~~ed~~k~I~lYINSpGgs~~~G~~~G~vt~~lAIyDtMq~Ik~--~ 109 (222) T PRK12552 32 IVYLGLPLFSDDDAKRQLGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGDAIGFETEAFAICDTMRYIKP--P 109 (222) T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCC--C T ss_conf 89867865642001101207899999999998514389999799983899765567643432306789899851599--8 Q ss_pred EEEEECCCCCCCCCCCCCCCCC--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHH Q ss_conf 7996033233223210001110--00130135345556530210245677742042255315521123466678999988 Q gi|254780747|r 99 VITEVHEMAASAGYLISCASNI--IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176 (293) Q Consensus 99 vva~~~~~~~S~~Y~iAs~ad~--I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~ 176 (293) T Consensus 110 V~Tic~G~AaSmgalLLaaG~kGkR~alPnsriMiH-----QP-----------------~gg~-------~-GqAsDI~ 159 (222) T PRK12552 110 VHTICIGQAMGTAAMILSAGTKGQRASLPHASIVLH-----QP-----------------RSGA-------R-GQATDIQ 159 (222) T ss_pred EEEEEHHHHHHHHHHHHHCCCCCCCEECCCCHHHHC-----CC-----------------CCCC-------C-CCHHHHH T ss_conf 578852787709999986388877212687113223-----87-----------------7677-------7-7799999 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHC-CCCCCHHHHHHCCCCCCCCC Q ss_conf 777776666677899998514999889988734-98237889987798062389 Q gi|254780747|r 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVVGG 229 (293) Q Consensus 177 ~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~-g~~~~~~~A~~~GLvD~ig~ 229 (293) T Consensus 160 i~a~Eil~~r~~l~~ila~~TGq~~e~I~~d~~RD~~msA~EA~eYGLID~Il~ 213 (222) T PRK12552 160 IRAKEVLHNKRTMLEILSRNTGQTVEKLSKDSDRMFYLTPQEAKEYGLIDRVLE 213 (222) T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCHHHHHHHCCCCEEEC T ss_conf 999999999999999999987969999998718775678999998098768722 |
|
| >KOG0840 consensus | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.8e-11 Score=88.94 Aligned_cols=158 Identities=24% Similarity=0.294 Sum_probs=107.1 Q ss_pred EEEEEEECCH--HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCC Q ss_conf 9976662386--99999999986189987999975888888899999999999841478679960332332232100011 Q gi|254780747|r 41 IAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS 118 (293) Q Consensus 41 i~i~G~I~~~--~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~a 118 (293) T Consensus 95 i~lg~~Idd~va~~viaqlL~Ld~ed~~K~I~lyINSPGG~vtaglAIYDtMq~ik~--~V~Tic~G~Aas~aalLLaaG 172 (275) T KOG0840 95 VFLGQPIDDDVANLVIAQLLYLDSEDPKKPIYLYINSPGGSVTAGLAIYDTMQYIKP--DVSTICVGLAASMAALLLAAG 172 (275) T ss_pred EEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCC--CCEEEEHHHHHHHHHHHHHCC T ss_conf 641885768999999999998632388887689984899733102568988876379--711220556776888998668 Q ss_pred CC--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 10--0013013534555653021024567774204225531552112346667899998877777666667789999851 Q gi|254780747|r 119 NI--IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 (293) Q Consensus 119 d~--I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~ 196 (293) T Consensus 173 ~KG~R~alPnsriMI-----hQP-----------------~gga~---Gqa~Di~i~akE-----~~~~k~~l~~i~a~~ 222 (275) T KOG0840 173 AKGKRYALPNSRIMI-----HQP-----------------SGGAG---GQATDIVIQAKE-----LMRIKEYLNEIYAKH 222 (275) T ss_pred CCCCEEECCCCEEEE-----ECC-----------------CCCCC---CCCHHHHHHHHH-----HHHHHHHHHHHHHHH T ss_conf 876400067750578-----656-----------------77767---661379998999-----999999999999976 Q ss_pred CCCCHHHHHHHHC-CCCCCHHHHHHCCCCCCCCCH Q ss_conf 4999889988734-982378899877980623898 Q gi|254780747|r 197 RNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVVGGQ 230 (293) Q Consensus 197 R~~~~~~~~~~~~-g~~~~~~~A~~~GLvD~ig~~ 230 (293) T Consensus 223 Tgq~~e~i~~d~dRd~fmsa~EA~eyGliD~v~~~ 257 (275) T KOG0840 223 TGQPLEVIEKDMDRDRFMSAEEAKEYGLIDKVIDH 257 (275) T ss_pred CCCCHHHHHHHHCCCCCCCHHHHHHHCCHHHHHCC T ss_conf 39969999754032302799999881633455328 |
|
| >PRK05869 enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.5e-10 Score=83.37 Aligned_cols=163 Identities=20% Similarity=0.313 Sum_probs=110.6 Q ss_pred CCCCEEEEEEEEEEECC------HHHHHHHHHHHHCCCCCCEEEEECC----CCCCCHHH------------HHHHHHHH Q ss_conf 77872899997666238------6999999999861899879999758----88888899------------99999999 Q gi|254780747|r 33 DNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLS----SPGGSAYA------------GEAIFRAI 90 (293) Q Consensus 33 ~~~~~i~~i~i~G~I~~------~~~l~~~l~~a~~d~~ik~ivL~i~----SpGG~~~~------------~~~i~~ai 90 (293) T Consensus 13 ~~d~gVa~itlnrP~~Nal~~~~~~~L~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 92 (225) T PRK05869 13 SQDAGLATLLLSRPPTNALTRQVYREIVAAADELGRRDDVAAVILFGGHEIFSAGDDMPELRTLSAQEADTAARVRQQAV 92 (225) T ss_pred CCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHHHHCCCHHHHHHHHHHHHHHH T ss_conf 78699899996787667899999999999999996489945999988997477267778772268334557899999999 Q ss_pred HHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCC Q ss_conf 9841-478679960332332232100011100013013534555653021024567774204225531552112346667 Q gi|254780747|r 91 QKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 (293) Q Consensus 91 ~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~ 169 (293) T Consensus 93 ~~i~~~pkPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~------------~~G~~p~---------------- 144 (225) T PRK05869 93 DAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEI------------LAGLAPR---------------- 144 (225) T ss_pred HHHHHCCCCEEEEECCCCCHHHHHHHHHHCHHHHCCCCEEECCCC------------CCCCCCC---------------- T ss_conf 999838998999982800347899999704463079849988210------------6474877---------------- Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC Q ss_conf 899998877777666667789999851499988998873498237889987798062389899999999741 Q gi|254780747|r 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293) Q Consensus 170 ~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293) T Consensus 145 ~g-------------~~~~l~~~iG~~~-----a~el~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 198 (225) T PRK05869 145 GD-------------GMARLTRAAGPSR-----AKELVFSGRFFDAEEALALGLIDEMVAPDDVYDAAAAWA 198 (225) T ss_pred CC-------------HHHHHHHHHHHHH-----HHHHHHCCCCCCHHHHHHCCCCCEEECCCHHHHHHHHHH T ss_conf 68-------------9999999977999-----999998599777999998498627658128999999999 |
|
| >PRK06495 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.3e-10 Score=84.21 Aligned_cols=158 Identities=22% Similarity=0.328 Sum_probs=107.4 Q ss_pred CCCEEEEEEEEEEECC------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHH--------------HHHHHHHH Q ss_conf 7872899997666238------69999999998618998799997588----888889--------------99999999 Q gi|254780747|r 34 NSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSS----PGGSAY--------------AGEAIFRA 89 (293) Q Consensus 34 ~~~~i~~i~i~G~I~~------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~--------------~~~~i~~a 89 (293) T Consensus 10 ~~~~Va~itlnrP~~Nal~~~m~~el~~al~~~~~d~~vr~vvl~g~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (257) T PRK06495 10 VSDHVAVVTLDNPPVNALSREMRDELIAVFDSLNDRPDVRVVVLTGAGKVFCAGADLKNRPDLESGPGALWAHNRRTREV 89 (257) T ss_pred EECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHHCCCCCCCCHHHHHHHHHHHHH T ss_conf 99999999976775368999999999999999972999169999767981276887565146556703589999999999 Q ss_pred HHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCC Q ss_conf 99841-47867996033233223210001110001301353455565302102456777420422553155211234666 Q gi|254780747|r 90 IQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168 (293) Q Consensus 90 i~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~ 168 (293) T Consensus 90 ~~~i~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~-------pe~-----~~Gl~------g---------- 141 (257) T PRK06495 90 FYCIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGL-------PEI-----DVGLA------G---------- 141 (257) T ss_pred HHHHHHCCCCEEEEECCEEECCCHHHHHHHHHHEECCCCEEEC-------CCC-----CEEEE------C---------- T ss_conf 9999958998999971377417225665432410047888986-------323-----74120------5---------- Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC Q ss_conf 7899998877777666667789999851499988-998873498237889987798062389899999999741 Q gi|254780747|r 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293) Q Consensus 169 ~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~-~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293) T Consensus 142 -g~----~~l~-----------r~------iG~~~a~~l~ltg~~~~aeeA~~~Glv~~vv~~~~l~~~a~~~a 193 (257) T PRK06495 142 -GG----KHAM-----------RL------FPHSLTRRMMLTGYRVPASELYRLGIIEACLPPDELMPEAMALA 193 (257) T ss_pred -CH----HHHH-----------HH------HCHHHHHHHHHHCCCCCHHHHHHCCCCCEEECHHHHHHHHHHHH T ss_conf -36----7899-----------98------47999999986189678999998799748748779999999999 |
|
| >PRK08138 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.1e-10 Score=82.12 Aligned_cols=163 Identities=23% Similarity=0.275 Sum_probs=108.7 Q ss_pred CCCCEEEEEEEEEEECC-------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHH----------HHHHHHHH Q ss_conf 77872899997666238-------69999999998618998799997588----88888999----------99999999 Q gi|254780747|r 33 DNSPHVARIAIRGQIED-------SQELIERIERISRDDSATALIVSLSS----PGGSAYAG----------EAIFRAIQ 91 (293) Q Consensus 33 ~~~~~i~~i~i~G~I~~-------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~----------~~i~~ai~ 91 (293) T Consensus 12 ~~~dgVa~itlnrP~~~Nal~~~m~~el~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 91 (260) T PRK08138 12 RPADGVALLRLNRPDARNALNMEVRQQLAEHFTSLSEDPDIRVIVLTGGGTVFAAGADLKEFATAGAIELYLRHTERYWE 91 (260) T ss_pred ECCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHHHHCCCCHHHHHHHHHHHHH T ss_conf 82898899997478878998999999999999999768996699997899876468788888445846789999999999 Q ss_pred HHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCC Q ss_conf 841-4786799603323322321000111000130135345556530210245677742042255315521123466678 Q gi|254780747|r 92 KVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 (293) Q Consensus 92 ~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~ 170 (293) T Consensus 92 ~i~~~~kPvIaaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~------------~~Gl~p~---------~g~----- 145 (260) T PRK08138 92 AIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEI------------KVGLMPG---------AGG----- 145 (260) T ss_pred HHHHCCCCEEEEECCEEECCCHHHHHHCCCCCCCCCCCEECCCC------------EECCCCC---------CCH----- T ss_conf 99838998999978940333079987410113354442446410------------1687888---------558----- Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC Q ss_conf 99998877777666667789999851499988998873498237889987798062389899999999741 Q gi|254780747|r 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293) Q Consensus 171 s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293) T Consensus 146 ----~~-----------~l~r~iG~~~-----A~ellltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 196 (260) T PRK08138 146 ----TQ-----------RLVRAVGKFK-----AMRMALTGCMVPAPEALAIGLVSEVVEDEETLPRALELA 196 (260) T ss_pred ----HH-----------HHHHHHHHHH-----HHHHHHCCCCCCHHHHHHCCCCCEEECHHHHHHHHHHHH T ss_conf ----99-----------9999975999-----999986088257999998699538748169999999999 |
|
| >PRK06688 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=9e-10 Score=81.45 Aligned_cols=161 Identities=21% Similarity=0.253 Sum_probs=108.7 Q ss_pred CCCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHH---------------HHHHH Q ss_conf 787289999766623-8------69999999998618998799997588----8888899---------------99999 Q gi|254780747|r 34 NSPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLSS----PGGSAYA---------------GEAIF 87 (293) Q Consensus 34 ~~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~---------------~~~i~ 87 (293) T Consensus 11 ~~~~ia~itlNrP~~~Nal~~~~~~~l~~~~~~~~~d~~v~~iVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~ 90 (263) T PRK06688 11 LADGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVLLTGAGGAFSAGGDIKDFDAAPGGGPTYPEDELAPVN 90 (263) T ss_pred EECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHH T ss_conf 98999999974777579999999999999999996389936999977998676897679887256665055789899999 Q ss_pred HHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCC Q ss_conf 9999841-478679960332332232100011100013013534555653021024567774204225531552112346 Q gi|254780747|r 88 RAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 (293) Q Consensus 88 ~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p 166 (293) T Consensus 91 ~~~~~i~~~~kPvIaai~G~a~GgG~~la~~cD~ria~~~a~f~~pe------------~~~Gl~p~------------- 145 (263) T PRK06688 91 RFLRAIAALPKPVVAAVNGAAVGVGVSLALACDLVYASDSAKFSLPF------------AKLGLCPD------------- 145 (263) T ss_pred HHHHHHHHCCCCEEEEECCEECCCCHHHHHHCCCHHCCCCCEECCCC------------CCEECCCC------------- T ss_conf 99999995899889997576614527888623401004566660651------------24636888------------- Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC Q ss_conf 6678999988777776666677899998514999889-98873498237889987798062389899999999741 Q gi|254780747|r 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293) Q Consensus 167 ~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~-~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293) T Consensus 146 ---~~~~--~~-----------l~------r~iG~~~a~~llltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a 199 (263) T PRK06688 146 ---AGGS--AL-----------LP------RLIGRARAAELLLLGEPLTAAEALRIGLVNRVVPAAELDAEADAQA 199 (263) T ss_pred ---CCHH--HH-----------HH------HHHCHHHHHHHHHCCCCCCHHHHHHCCCCCEECCHHHHHHHHHHHH T ss_conf ---3188--99-----------99------9838999999874089878999998799426658068999999999 |
|
| >PRK09674 enoyl-CoA hydratase-isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.4e-09 Score=80.33 Aligned_cols=162 Identities=20% Similarity=0.258 Sum_probs=105.0 Q ss_pred CCCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHH----------HHHHHHHHH Q ss_conf 787289999766623-8------69999999998618998799997588----88888999----------999999998 Q gi|254780747|r 34 NSPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLSS----PGGSAYAG----------EAIFRAIQK 92 (293) Q Consensus 34 ~~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~----------~~i~~ai~~ 92 (293) T Consensus 10 ~~~~ia~itlnRP~~~Nal~~~m~~el~~a~~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~ 89 (257) T PRK09674 10 RQQRVLLLTLNRPEARNALNTALLAQLVNELEAAATDTSISVCVITGNARFFAAGADLNEMAEKDLVATLNDPRPQLWQR 89 (257) T ss_pred EECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHH T ss_conf 99999999965888889989999999999999986389906999978998770776527650245144554189999999 Q ss_pred HC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCC Q ss_conf 41-47867996033233223210001110001301353455565302102456777420422553155211234666789 Q gi|254780747|r 93 VK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171 (293) Q Consensus 93 ~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s 171 (293) T Consensus 90 i~~~~kPvIaav~G~a~GgG~~la~~cD~~ias~~a~f~~pe------------~~~Gl~p~---------~-----g~- 142 (257) T PRK09674 90 IQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPE------------ITLGIMPG---------A-----GG- 142 (257) T ss_pred HHHCCCCEEEEECCEEEEEEHHHHHHCCCCHHHHHHHHCCCC------------CEEEECCC---------C-----CH- T ss_conf 983899899998893123145765530210233321105720------------32762788---------4-----49- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC Q ss_conf 9998877777666667789999851499988998873498237889987798062389899999999741 Q gi|254780747|r 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293) Q Consensus 172 ~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293) T Consensus 143 ---~~~-----------l~~~iG~~-----~a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 193 (257) T PRK09674 143 ---TQR-----------LIRSVGKS-----LASQMVLTGESITAQQAQQAGLVSEVFPPELTLERALQLA 193 (257) T ss_pred ---HHH-----------HHHHHHHH-----HHHHHHHHCCCCCHHHHHHCCCEEEECCHHHHHHHHHHHH T ss_conf ---999-----------99997599-----9999998589987999997897335658168999999999 |
|
| >PRK07657 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.3e-09 Score=80.54 Aligned_cols=164 Identities=21% Similarity=0.330 Sum_probs=111.5 Q ss_pred CCCCCCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECCC-----CCCCHHHH------------HHH Q ss_conf 567787289999766623-8------69999999998618998799997588-----88888999------------999 Q gi|254780747|r 31 VEDNSPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLSS-----PGGSAYAG------------EAI 86 (293) Q Consensus 31 ~~~~~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~S-----pGG~~~~~------------~~i 86 (293) T Consensus 8 ~~~~~~~Va~itlnrPe~~Nal~~~m~~~l~~al~~~~~d~~vr~vvl~g~G~~~F~aG~Dl~e~~~~~~~~~~~~~~~~ 87 (261) T PRK07657 8 VDYVTPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSLI 87 (261) T ss_pred EEEECCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHCCCHHHHHHHHHHH T ss_conf 97853998999982898779989999999999999997589964999966998764289984766038877899999999 Q ss_pred HHHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCC Q ss_conf 99999841-47867996033233223210001110001301353455565302102456777420422553155211234 Q gi|254780747|r 87 FRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165 (293) Q Consensus 87 ~~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~ 165 (293) T Consensus 88 ~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe------------~~~Gl~p~---------~g~ 146 (261) T PRK07657 88 RTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTE------------TTLAIIPG---------AGG 146 (261) T ss_pred HHHHHHHHHCCCCEEEEECCEEEEHHHHHHHHCCCCCCCCCCEEEEEE------------EEECCCCC---------CCH T ss_conf 999999982999899997796640318998844603012554044200------------00467887---------468 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC Q ss_conf 66678999988777776666677899998514999889-98873498237889987798062389899999999741 Q gi|254780747|r 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293) Q Consensus 166 p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~-~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293) T Consensus 147 ---------~~~l-----------~r~------iG~~~a~~llltg~~~~aeeA~~~Glv~~v~~~~~l~~~a~~la 197 (261) T PRK07657 147 ---------TQRL-----------PRL------IGVGRAKELIYTGRRISAQEAKEIGLVEFVVPAHLLEEKAIEIA 197 (261) T ss_pred ---------HHHH-----------HHH------HHHHHHHHHHHCCCCCCHHHHHHCCCHHEECCHHHHHHHHHHHH T ss_conf ---------9999-----------998------66999999998099988999997798403758368999999999 |
|
| >PRK07511 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.5e-09 Score=80.04 Aligned_cols=160 Identities=21% Similarity=0.314 Sum_probs=106.4 Q ss_pred CCCEEEEEEEEEEECC-------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHH---------------HHHHH Q ss_conf 7872899997666238-------69999999998618998799997588----8888899---------------99999 Q gi|254780747|r 34 NSPHVARIAIRGQIED-------SQELIERIERISRDDSATALIVSLSS----PGGSAYA---------------GEAIF 87 (293) Q Consensus 34 ~~~~i~~i~i~G~I~~-------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~---------------~~~i~ 87 (293) T Consensus 9 ~~g~va~ItlnrP~~~Nal~~~m~~el~~al~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~ 88 (259) T PRK07511 9 RSGSTLVLTLSNPGARNALHPDMYAAGIEALATAERDPSIRAVVLTGADGFFCAGGNLNRLLENRAKPPSVQAASIDLLH 88 (259) T ss_pred EECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHH T ss_conf 98999999962778789979999999999999997689965999989999623643689886342489889999999999 Q ss_pred HHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCC Q ss_conf 9999841-478679960332332232100011100013013534555653021024567774204225531552112346 Q gi|254780747|r 88 RAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 (293) Q Consensus 88 ~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p 166 (293) T Consensus 89 ~~~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~-------p~-----~~~Gl~p~---------~--- 144 (259) T PRK07511 89 DWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAADDAKFVM-------AY-----VKVGLTPD---------G--- 144 (259) T ss_pred HHHHHHHHCCCCEEEEECCCEEHHHHHHHHHCCCCCCCCCCEEEC-------CC-----CCEEECCC---------C--- T ss_conf 999999839998999965703113389998327265454556745-------76-----66301688---------7--- Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHH Q ss_conf 6678999988777776666677899998514999889-9887349823788998779806238989999999974 Q gi|254780747|r 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 (293) Q Consensus 167 ~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~-~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~ 240 (293) T Consensus 145 ----g~~--~~l-----------~r~i------G~~~A~~llltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~ 196 (259) T PRK07511 145 ----GGS--WFL-----------ARAL------PRQLATEILLEGKPISAERLHALGVVNRLAKPGAALDEALAL 196 (259) T ss_pred ----CHH--HHH-----------HHHH------CHHHHHHHHHHCCCCCHHHHHHCCCCCEECCCHHHHHHHHHH T ss_conf ----699--999-----------9996------899999999848999799998889965743811899999999 |
|
| >PRK07854 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.6e-09 Score=79.95 Aligned_cols=163 Identities=18% Similarity=0.259 Sum_probs=109.5 Q ss_pred CCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHH-------HHHHHHHHHHHC-C Q ss_conf 87289999766623-8------69999999998618998799997588----8888899-------999999999841-4 Q gi|254780747|r 35 SPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLSS----PGGSAYA-------GEAIFRAIQKVK-N 95 (293) Q Consensus 35 ~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~-------~~~i~~ai~~~k-~ 95 (293) T Consensus 7 ~g~Va~itlnrP~~~NAl~~~m~~~l~~al~~~-~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~i~~~ 85 (243) T PRK07854 7 DGQVLTIELQRPERRNALNSELVEELREAVRKA-GDAGARAIVLTGQGTVFCAGADLSGDVYADDFPDALIELLHAIDAA 85 (243) T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHH-CCCCCEEEEEECCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHC T ss_conf 899999997587767997999999999999972-3899559999788981668998655211667789999999999858 Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHH Q ss_conf 78679960332332232100011100013013534555653021024567774204225531552112346667899998 Q gi|254780747|r 96 RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAV 175 (293) Q Consensus 96 ~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~ 175 (293) T Consensus 86 ~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~p------------~~~~Gl~~~------------~----g--~~ 135 (243) T PRK07854 86 PVPVIAAINGPAIGAGLQLALACDLRVVAPEAYFQFP------------VAKYGLALD------------N----W--TI 135 (243) T ss_pred CCCEEEEECCEECCCHHHHHHCCCEEEECCCCEEECC------------CCCEEECCC------------C----C--HH T ss_conf 9988999758323351578860999996477657566------------554145779------------6----2--99 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCCCC Q ss_conf 877777666667789999851499988998873498237889987798062389899999999741877 Q gi|254780747|r 176 QMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 (293) Q Consensus 176 ~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~~~~ 244 (293) T Consensus 136 ~-----------~l~~~vG~~~-----A~~llltg~~i~A~eA~~~Glv~~v~~~~~a~~~A~~ia~~~ 188 (243) T PRK07854 136 R-----------RLSSLVGGGR-----ARAMLLGAEKLTAEQALATGMANRIGTLADAQAWAAEIAGLA 188 (243) T ss_pred H-----------HHHHHHHHHH-----HHHHHHHCCEECHHHHHHCCCCCEECCHHHHHHHHHHHHCCC T ss_conf 9-----------9999864999-----999999399425999987799668518899999999998759 |
|
| >PRK07830 consensus | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.7e-09 Score=79.78 Aligned_cols=161 Identities=17% Similarity=0.200 Sum_probs=107.8 Q ss_pred CCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECC----CCCCCHHHH-------------HHHHHHH Q ss_conf 87289999766623-8------6999999999861899879999758----888888999-------------9999999 Q gi|254780747|r 35 SPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLS----SPGGSAYAG-------------EAIFRAI 90 (293) Q Consensus 35 ~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~----SpGG~~~~~-------------~~i~~ai 90 (293) T Consensus 18 ~~~Va~itlnrP~~~Nal~~~m~~el~~a~~~~~~d~~vr~vvl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 97 (267) T PRK07830 18 TDGVLSVTINRPDSLNSLTVPVLTGLADALEGAATDPRVKVVRLGGAGRGFSSGAGISADDVWGGGEPPTAVVDEANRAV 97 (267) T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHH T ss_conf 89999999827998899899999999999998854899559999689987717887055540266565899999999999 Q ss_pred HHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCC Q ss_conf 9841-478679960332332232100011100013013534555653021024567774204225531552112346667 Q gi|254780747|r 91 QKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 (293) Q Consensus 91 ~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~ 169 (293) T Consensus 98 ~~i~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~p------------~~~lGi~p~---------------- 149 (267) T PRK07830 98 RAIVALPVPVVAVVQGPAAGVGVSLALACDLVLASESAFFMLA------------FTKIGLMPD---------------- 149 (267) T ss_pred HHHHHCCCCEEEEECCEEEEHHHHHHHHHCCCCCCCCCEEECC------------CCCEEEECC---------------- T ss_conf 9999689989999778377025799974321333457477167------------677775178---------------- Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC Q ss_conf 899998877777666667789999851499988998873498237889987798062389899999999741 Q gi|254780747|r 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293) Q Consensus 170 ~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293) T Consensus 150 ~g~--~~~l-----------~~~iG~~~-----A~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~A 203 (267) T PRK07830 150 GGA--SALV-----------AAAIGRIR-----AMRMALLAERLPAAEALAWGLVSAVYPADDFDAEVDKVI 203 (267) T ss_pred CCH--HHHH-----------HHHHHHHH-----HHHHHHCCCCCCHHHHHHCCCCCEECCHHHHHHHHHHHH T ss_conf 559--9999-----------99966999-----999986289887999998799758638589999999999 |
|
| >PRK06951 consensus | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.6e-09 Score=79.83 Aligned_cols=160 Identities=18% Similarity=0.269 Sum_probs=108.9 Q ss_pred CCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHH---------HHHHHHHHHHHC Q ss_conf 87289999766623-8------69999999998618998799997588----8888899---------999999999841 Q gi|254780747|r 35 SPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLSS----PGGSAYA---------GEAIFRAIQKVK 94 (293) Q Consensus 35 ~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~---------~~~i~~ai~~~k 94 (293) T Consensus 8 ~~~Va~itLnrP~~~Nal~~~m~~el~~~~~~~~~d~~vrvvvl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~i~ 87 (254) T PRK06951 8 AAGVLTITFARPAKKNAITAAMYQTMADALAAAQDDAAVRAILIRGSDGIFSAGNDLEDFLKAPPKDEDAPVFQFLRQIS 87 (254) T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEECCCCHHHHHHCCCCCCCCHHHHHHHHHH T ss_conf 89999999748874689899999999999999866889179999879998768997598861876433328999999998 Q ss_pred -CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHH Q ss_conf -4786799603323322321000111000130135345556530210245677742042255315521123466678999 Q gi|254780747|r 95 -NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPK 173 (293) Q Consensus 95 -~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e 173 (293) T Consensus 88 ~~~kPvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~------------~~Gl~p~----------------~g~~ 139 (254) T PRK06951 88 SAPKPIVAAVCGPAVGIGTTMLLHCDLVYAADTAAFSLPFA------------QLGLCPE----------------AASS 139 (254) T ss_pred HCCCCEEEEECCEEECCCHHHHHHCCCHHHCCCCCCCCHHH------------CCCCCCC----------------CCHH T ss_conf 38999899986875144157766043012203670136653------------7304888----------------5399 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC Q ss_conf 988777776666677899998514999889-98873498237889987798062389899999999741 Q gi|254780747|r 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293) Q Consensus 174 ~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~-~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293) T Consensus 140 --~~l~-----------~~------iG~~~a~ellltg~~~~A~eA~~~Glv~~vv~~~~l~~~a~~~a 189 (254) T PRK06951 140 --LLLP-----------RL------AGYQRAAEKLLLGEPFDALEAHEIGLVNRVLPAAELDAFAAQQA 189 (254) T ss_pred --HHHH-----------HH------HCHHHHHHHHHHCCCCCHHHHHHCCCCCEECCHHHHHHHHHHHH T ss_conf --9999-----------98------79999998877487546999998799416618679999999999 |
|
| >PRK09076 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.5e-09 Score=78.62 Aligned_cols=161 Identities=19% Similarity=0.208 Sum_probs=108.7 Q ss_pred CCCEEEEEEEEEEECCH------HHHHHHHHHHHCCCCCCEEEEECCCC-----CCCHHH------------HHHHHHHH Q ss_conf 78728999976662386------99999999986189987999975888-----888899------------99999999 Q gi|254780747|r 34 NSPHVARIAIRGQIEDS------QELIERIERISRDDSATALIVSLSSP-----GGSAYA------------GEAIFRAI 90 (293) Q Consensus 34 ~~~~i~~i~i~G~I~~~------~~l~~~l~~a~~d~~ik~ivL~i~Sp-----GG~~~~------------~~~i~~ai 90 (293) T Consensus 9 ~~~~va~ItlnrP~~Nal~~~m~~~l~~~l~~~~~d~~vrvvvl~g~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~ 88 (258) T PRK09076 9 IDGHVAILTLNNPPANTWTADSLQALKQLVLELNANKDVYALVITGDGEKFFSAGADLNLFADGDKAVAREMARRFGEAF 88 (258) T ss_pred EECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEECCCCHHHHCCCCHHHHHHHHHHHHHHH T ss_conf 98999999977766266999999999999999962999559999658998640670277660478445899999999999 Q ss_pred HHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCC Q ss_conf 9841-478679960332332232100011100013013534555653021024567774204225531552112346667 Q gi|254780747|r 91 QKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 (293) Q Consensus 91 ~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~ 169 (293) T Consensus 89 ~~l~~~~~pvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe------------~~~Gl~p~---------~g~---- 143 (258) T PRK09076 89 EALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPE------------ASVGLLPC---------AGG---- 143 (258) T ss_pred HHHHHCCCCEEEEECCEEEEHHHHHHHHCCEEEECCCCCCCCCH------------HEECCCCC---------CCH---- T ss_conf 99995899999998990764349998606755431565422612------------10166888---------668---- Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC Q ss_conf 899998877777666667789999851499988-998873498237889987798062389899999999741 Q gi|254780747|r 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293) Q Consensus 170 ~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~-~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293) T Consensus 144 -----~~~l~-----------r~i------G~~~A~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 194 (258) T PRK09076 144 -----TQNLP-----------WLV------GEGWAKRMILCGERVDAATALRIGLVEEVVEKGEARDAALALA 194 (258) T ss_pred -----HHHHH-----------HHH------HHHHHHHHHHCCCCCCHHHHHHCCCCCEECCCHHHHHHHHHHH T ss_conf -----99999-----------997------2999999986499682999987699023559007999999999 |
|
| >PRK07658 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.3e-09 Score=77.94 Aligned_cols=161 Identities=24% Similarity=0.319 Sum_probs=108.1 Q ss_pred CCEEEEEEEEEEECC------HHHHHHHHHHHHCCCCCCEEEEECC----CCCCCHHHH---------HHH----HHHHH Q ss_conf 872899997666238------6999999999861899879999758----888888999---------999----99999 Q gi|254780747|r 35 SPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLS----SPGGSAYAG---------EAI----FRAIQ 91 (293) Q Consensus 35 ~~~i~~i~i~G~I~~------~~~l~~~l~~a~~d~~ik~ivL~i~----SpGG~~~~~---------~~i----~~ai~ 91 (293) T Consensus 9 ~~~ia~itlnrP~~Nal~~~~~~~l~~a~~~~~~d~~vr~vvl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 88 (257) T PRK07658 9 EDHVAVITLNHPPANALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTEAEQATELAQLGQQTFE 88 (257) T ss_pred ECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHH T ss_conf 99999999718987899999999999999999878895699997899872289977887435664668999999999999 Q ss_pred HHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCC Q ss_conf 841-4786799603323322321000111000130135345556530210245677742042255315521123466678 Q gi|254780747|r 92 KVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 (293) Q Consensus 92 ~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~ 170 (293) T Consensus 89 ~i~~~~kPvIaaV~G~a~GgG~~lal~cD~~ia~~~a~f~~p------------e~~~Gl~p~----------------~ 140 (257) T PRK07658 89 RVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLP------------ELNLGLIPG----------------F 140 (257) T ss_pred HHHHCCCCEEEEECCHHHHCCHHHHHCCCEEEECCCCCCCCH------------HCCEEECCC----------------C T ss_conf 999589989999767253142577532653431100404664------------216751787----------------4 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC Q ss_conf 99998877777666667789999851499988998873498237889987798062389899999999741 Q gi|254780747|r 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293) Q Consensus 171 s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293) T Consensus 141 g~~--~~-----------l~r~iG~~~-----a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 193 (257) T PRK07658 141 AGT--QR-----------LPRYVGKAK-----ALEMMLTSEPITGAEALKWGLVNGAFSEEELLDDAKKLA 193 (257) T ss_pred CHH--HH-----------HHHHHHHHH-----HHHHHHCCCCCCHHHHHHCCCCCEEECHHHHHHHHHHHH T ss_conf 579--99-----------999967999-----999997589898999997799567708689999999999 |
|
| >PRK06494 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.6e-09 Score=78.58 Aligned_cols=160 Identities=18% Similarity=0.247 Sum_probs=106.5 Q ss_pred CCEEEEEEEEEEEC----C---HHHHHHHHHHHHCCCCCCEEEEECCC-----CCCCHHHH---------HHHHHHH-HH Q ss_conf 87289999766623----8---69999999998618998799997588-----88888999---------9999999-98 Q gi|254780747|r 35 SPHVARIAIRGQIE----D---SQELIERIERISRDDSATALIVSLSS-----PGGSAYAG---------EAIFRAI-QK 92 (293) Q Consensus 35 ~~~i~~i~i~G~I~----~---~~~l~~~l~~a~~d~~ik~ivL~i~S-----pGG~~~~~---------~~i~~ai-~~ 92 (293) T Consensus 11 ~~~Va~itlnrP~~~Nal~~~~~~el~~al~~~~~d~~vrvvvl~g~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~ 90 (259) T PRK06494 11 KGPITIVTLNRPEVMNALHSDAHFELEKVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKWQAAGGKRGWPESGFAGLTSR 90 (259) T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEECCCCHHHHHHCCCCCCCHHHHHHHHHH T ss_conf 99999999737776789899999999999999863999359999758998157787767664224456526678999999 Q ss_pred HCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCH Q ss_conf 41478679960332332232100011100013013534555653021024567774204225531552112346667899 Q gi|254780747|r 93 VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 (293) Q Consensus 93 ~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~ 172 (293) T Consensus 91 ~~~~kPvIaaV~G~a~GgG~~lal~cD~~ias~~a~f~~pe------------~~~Gl~p~---------~g~------- 142 (259) T PRK06494 91 FDLDKPIIAAVNGVAMGGGFEIALACDLIIAAENATFALPE------------PRVGLAAL---------AGG------- 142 (259) T ss_pred HCCCCCEEEEECCEEEECCCEEEHHHCCCCCCCCCEEECHH------------HCCCCCCC---------CCH------- T ss_conf 61999889997065862543000210105667783892746------------51488887---------309------- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC Q ss_conf 9988777776666677899998514999889-98873498237889987798062389899999999741 Q gi|254780747|r 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293) Q Consensus 173 e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~-~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293) T Consensus 143 --~~~-----------l~~~i------G~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a 193 (259) T PRK06494 143 --LHR-----------LPRQI------GLKRAMGMILTGRHVTAREGLELGFVNEVVPAGEALAAAERWA 193 (259) T ss_pred --HHH-----------HHHHH------HHHHHHHHHHCCCCCCHHHHHHCCCCCEEECHHHHHHHHHHHH T ss_conf --999-----------99997------2999999998399665999998699628878779999999999 |
|
| >PRK05864 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.9e-09 Score=78.28 Aligned_cols=164 Identities=21% Similarity=0.356 Sum_probs=107.4 Q ss_pred CCCCCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHH------------------ Q ss_conf 67787289999766623-8------69999999998618998799997588----8888899------------------ Q gi|254780747|r 32 EDNSPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLSS----PGGSAYA------------------ 82 (293) Q Consensus 32 ~~~~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~------------------ 82 (293) T Consensus 7 ~~~~~~Va~itlnRP~k~NAl~~~m~~el~~a~~~~~~d~~vrvvVltG~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~ 86 (269) T PRK05864 7 DHPRPEIALVTLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGSVPHVEGLTRPTYALR 86 (269) T ss_pred EECCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHH T ss_conf 96679989999817132589899999999999998864899279999789998146856565045433344423567888 Q ss_pred -HHHHHHHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCC Q ss_conf -999999999841-478679960332332232100011100013013534555653021024567774204225531552 Q gi|254780747|r 83 -GEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPM 160 (293) Q Consensus 83 -~~~i~~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~ 160 (293) T Consensus 87 ~~~~~~~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~cD~ria~~~A~f~~~~~------------~~Gl~~~------- 147 (269) T PRK05864 87 SMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGI------------NNGLTAS------- 147 (269) T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCEEEECCHHHHHCCCEEEECCCCEEECCCC------------CEEECCC------- T ss_conf 999999999999858998899973857646357764177024358868955644------------7412578------- Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHH Q ss_conf 112346667899998877777666667789-9998514999889988734982378899877980623898999999997 Q gi|254780747|r 161 KAEPSPFSEVNPKAVQMMQDVVDSSYHWFV-RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYA 239 (293) Q Consensus 161 K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~-~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~ 239 (293) T Consensus 148 -~~-----G~----------------~~~L~r~vG~~~-----A~el~ltg~~i~A~eA~~~Glv~~vv~~~~l~~~a~~ 200 (269) T PRK05864 148 -EL-----GL----------------SYLLPRAIGSSR-----AFEIMLTGRDVDAEEAERIGLVSRQVPDEQLLDTCYA 200 (269) T ss_pred -CH-----HH----------------HHHHHHHHHHHH-----HHHHHHHCCCCCHHHHHHCCCCCEEECCCHHHHHHHH T ss_conf -41-----27----------------788899868999-----9999981991279999977973368871089999999 Q ss_pred HC Q ss_conf 41 Q gi|254780747|r 240 LG 241 (293) Q Consensus 240 ~~ 241 (293) T Consensus 201 lA 202 (269) T PRK05864 201 IA 202 (269) T ss_pred HH T ss_conf 99 |
|
| >PRK06144 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.2e-09 Score=78.96 Aligned_cols=163 Identities=21% Similarity=0.268 Sum_probs=107.7 Q ss_pred CCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECC-----CCCCCHHHH-------------HHHHHH Q ss_conf 87289999766623-8------6999999999861899879999758-----888888999-------------999999 Q gi|254780747|r 35 SPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLS-----SPGGSAYAG-------------EAIFRA 89 (293) Q Consensus 35 ~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~-----SpGG~~~~~-------------~~i~~a 89 (293) T Consensus 15 ~~~v~~itLnrP~~~Nal~~~m~~el~~~l~~~~~d~~vr~vVl~gag~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 94 (262) T PRK06144 15 QGGIARITFNRPAARNAMTWAMYEGLAAICEEIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAVAYERRIDRV 94 (262) T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEECCCCHHHHHCCCCHHHHHHHHHHHHHH T ss_conf 99999999748875799999999999999999863899149999579986253476578761457704578999999999 Q ss_pred HHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCC Q ss_conf 99841-47867996033233223210001110001301353455565302102456777420422553155211234666 Q gi|254780747|r 90 IQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168 (293) Q Consensus 90 i~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~ 168 (293) T Consensus 95 ~~~i~~~~kPvIaav~G~a~GgG~~lal~cD~~ias~~a~f~~-------p~~~----~lG~~~---------------- 147 (262) T PRK06144 95 LGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGF-------PIAR----TLGNCL---------------- 147 (262) T ss_pred HHHHHHCCCCEEEEECCEEEECCCEEHHCCCEEEECCCCEEEC-------CEEE----ECCCCC---------------- T ss_conf 9999958998899975878607222011077767789978975-------4345----147777---------------- Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCC Q ss_conf 78999988777776666677899998514999889988734982378899877980623898999999997418 Q gi|254780747|r 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 (293) Q Consensus 169 ~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~~ 242 (293) T Consensus 148 --~~~~~~-----------~l~~~iG~~~-----A~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~la~ 203 (262) T PRK06144 148 --SMSNLA-----------RLVALLGAAR-----VKDMLFTARLLEAEEALAAGLLNEVVPDAALDARADALAE 203 (262) T ss_pred --CHHHHH-----------HHHHHHCHHH-----HHHHHHCCCEECHHHHHHCCCHHHCCCHHHHHHHHHHHHH T ss_conf --714899-----------9999868999-----9999750887079999977984612490689999999999 |
|
| >PRK06142 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.4e-09 Score=78.72 Aligned_cols=159 Identities=22% Similarity=0.220 Sum_probs=103.4 Q ss_pred CCEEEEEEEEEEE-----CC--HHHHHHHHHHHHCCCCCCEEEEECC----CCCCCHHHH----------------H--- Q ss_conf 8728999976662-----38--6999999999861899879999758----888888999----------------9--- Q gi|254780747|r 35 SPHVARIAIRGQI-----ED--SQELIERIERISRDDSATALIVSLS----SPGGSAYAG----------------E--- 84 (293) Q Consensus 35 ~~~i~~i~i~G~I-----~~--~~~l~~~l~~a~~d~~ik~ivL~i~----SpGG~~~~~----------------~--- 84 (293) T Consensus 12 ~~~Va~itlnrP~~~Nal~~~m~~el~~~~~~~~~d~~vr~vvltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 91 (271) T PRK06142 12 ADHVAQVTLNRPGKGNAMNPAFWSEIPEIFRWLDADPEVRAVVLSGAGKHFSYGIDLMAMAGVFGQLGKDGLGRNRTDLR 91 (271) T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHH T ss_conf 99999999768887799899999999999999874889489998389986078768898733344333331125499999 Q ss_pred ----HHHHHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECC Q ss_conf ----9999999841-47867996033233223210001110001301353455565302102456777420422553155 Q gi|254780747|r 85 ----AIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSP 159 (293) Q Consensus 85 ----~i~~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~ 159 (293) T Consensus 92 ~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~la~~cD~~ia~~~a~f~~pe------------~~~Gl~p~------ 153 (271) T PRK06142 92 REILRLQASINAVADCRKPVLAAVQGWCIGGAVDLISACDMRYASADAKFSIRE------------IDLGMVAD------ 153 (271) T ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCEEEEHHHHHHHHHCCCCCCCCCEEECCC------------CCCCCCCC------ T ss_conf 999999999999972899899998884440758999861512227985898950------------20344888------ Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH-HHHCCCCCCHHHHHHCCCCCCCCC-HHHHHHHH Q ss_conf 2112346667899998877777666667789999851499988998-873498237889987798062389-89999999 Q gi|254780747|r 160 MKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGG-QEEVWQSL 237 (293) Q Consensus 160 ~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~-~~~~g~~~~~~~A~~~GLvD~ig~-~~~a~~~l 237 (293) T Consensus 154 ---~g-------~~--~~-----------l~~~i------G~~~a~~l~ltg~~i~A~eA~~~Glv~~vv~~~e~l~~~a 204 (271) T PRK06142 154 ---VG-------TL--QR-----------LPRII------GDGHLRELAYTGRDIDAAEAEKIGLVNRVYDDAEALLAAA 204 (271) T ss_pred ---CC-------HH--HH-----------HHHHH------CHHHHHHHHHHCCEECHHHHHHCCCCCEECCCHHHHHHHH T ss_conf ---45-------99--99-----------99997------8999999983097615999998798406419889999999 Q ss_pred HHH Q ss_conf 974 Q gi|254780747|r 238 YAL 240 (293) Q Consensus 238 ~~~ 240 (293) T Consensus 205 ~~~ 207 (271) T PRK06142 205 HAT 207 (271) T ss_pred HHH T ss_conf 999 |
|
| >PRK05995 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.2e-09 Score=78.97 Aligned_cols=159 Identities=22% Similarity=0.282 Sum_probs=107.6 Q ss_pred CCEEEEEEEEEEEC----C---HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHH---------------HHHHHH Q ss_conf 87289999766623----8---69999999998618998799997588----8888899---------------999999 Q gi|254780747|r 35 SPHVARIAIRGQIE----D---SQELIERIERISRDDSATALIVSLSS----PGGSAYA---------------GEAIFR 88 (293) Q Consensus 35 ~~~i~~i~i~G~I~----~---~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~---------------~~~i~~ 88 (293) T Consensus 11 ~~~ia~itlnrP~~~Nal~~~m~~el~~al~~~~~d~~vrvvvl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 90 (261) T PRK05995 11 RGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSDDENRADARRLAD 90 (261) T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHHHHHHCCCCHHHHHHHHHHHHH T ss_conf 99999999758676789899999999999999972999369999789984365767798875203782355667999999 Q ss_pred HHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCC Q ss_conf 999841-4786799603323322321000111000130135345556530210245677742042255315521123466 Q gi|254780747|r 89 AIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 (293) Q Consensus 89 ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~ 167 (293) T Consensus 91 l~~~i~~~~kPvIaai~G~a~GgG~~Lal~~D~~ia~~~a~f~~pe~------------~~Gl~p~---------~~~~- 148 (261) T PRK05995 91 MLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEV------------RLGLIPA---------TISP- 148 (261) T ss_pred HHHHHHHCCCCEEEEECCEEEECCHHHHHHCCEEECCCCCEEECHHH------------HEEECCC---------CCHH- T ss_conf 99999968998999978988604177765166530338857865264------------4534465---------1100- Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH-HHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC Q ss_conf 678999988777776666677899998514999889988-73498237889987798062389899999999741 Q gi|254780747|r 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293) Q Consensus 168 ~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~-~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293) T Consensus 149 ---------~l-----------~------~~iG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~~~~la 197 (261) T PRK05995 149 ---------YV-----------I------RAMGERAARRYFLTAERFDAAEALRLGLVHEVVPADALDAKVAELA 197 (261) T ss_pred ---------HH-----------H------HCCCHHHHHHHHHHCCCCCHHHHHHCCCCCEECCHHHHHHHHHHHH T ss_conf ---------24-----------4------2015999999887489687999997798023568679999999999 |
|
| >TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.4e-09 Score=78.78 Aligned_cols=157 Identities=22% Similarity=0.315 Sum_probs=105.0 Q ss_pred CCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECCC-----CCCCHHH--------------HHHHHH Q ss_conf 87289999766623-8------69999999998618998799997588-----8888899--------------999999 Q gi|254780747|r 35 SPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLSS-----PGGSAYA--------------GEAIFR 88 (293) Q Consensus 35 ~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~S-----pGG~~~~--------------~~~i~~ 88 (293) T Consensus 9 ~~~va~ItlnRP~~~NAl~~~~~~~l~~al~~~~~d~~vr~vIltg~G~~~FcaG~D~~~~~~~~~~~~~~~~~~~~~~~ 88 (256) T TIGR03210 9 RNGIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYDGRGTIGLPMEELHS 88 (256) T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHH T ss_conf 99999999737464689999999999999998733999629999679974110477532221475411233016999999 Q ss_pred HHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCC Q ss_conf 99984147867996033233223210001110001301353455565302102456777420422553155211234666 Q gi|254780747|r 89 AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168 (293) Q Consensus 89 ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~ 168 (293) T Consensus 89 ~i~~--~~kPvIaav~G~a~GgG~~lal~~D~~iA~~~a~f~~p~~------------~lG~~~~--------------- 139 (256) T TIGR03210 89 AIRD--VPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGP------------KVGSVDP--------------- 139 (256) T ss_pred HHHH--CCCCEEEEECCEEEHHHHHHHHHHCCCCCCCCCEEECCCC------------EECCCCC--------------- T ss_conf 9984--8998999988866668699998524152347871777556------------1442078--------------- Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH-HHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHH Q ss_conf 789999887777766666778999985149998899-887349823788998779806238989999999974 Q gi|254780747|r 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 (293) Q Consensus 169 ~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~-~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~ 240 (293) T Consensus 140 -~~~--~~~l-----------------~r~iG~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~ 192 (256) T TIGR03210 140 -GYG--TALL-----------------ARVVGEKKAREIWYLCRRYTAQEALAMGLVNAVVPHDQLDAEVQKW 192 (256) T ss_pred -CCH--HHHH-----------------HHHCCHHHHHHHHHHCCCCCHHHHHHCCCCCEECCHHHHHHHHHHH T ss_conf -506--8999-----------------9852399999999919907699999869705342846999999999 |
Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen. |
| >PRK07938 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.3e-09 Score=77.88 Aligned_cols=160 Identities=21% Similarity=0.275 Sum_probs=107.0 Q ss_pred CCCCCEEEEEEEEEEECC------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHH------H-------HHHH Q ss_conf 677872899997666238------69999999998618998799997588----88888999------9-------9999 Q gi|254780747|r 32 EDNSPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSS----PGGSAYAG------E-------AIFR 88 (293) Q Consensus 32 ~~~~~~i~~i~i~G~I~~------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~------~-------~i~~ 88 (293) T Consensus 6 ~~~edGVa~ItlnrP~~NAl~~~m~~el~~~~~~~~~d~~vrvvVltG~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 85 (249) T PRK07938 6 TTPEPGIAEVTVDYPPVNALPSRGWFALADAITAAGRDPDTRVVILRAEGRGFNAGVDIKELQATPGFTALIDANRGCFA 85 (249) T ss_pred EECCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEECCCHHHHHCCCCHHHHHHHHHHHHH T ss_conf 87369989999788877899999999999999998558992699997799972625767887537744567776525799 Q ss_pred HHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCC Q ss_conf 999841-4786799603323322321000111000130135345556530210245677742042255315521123466 Q gi|254780747|r 89 AIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 (293) Q Consensus 89 ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~ 167 (293) T Consensus 86 ~~~~i~~~~kPvIaaV~G~a~GgG~~lal~cD~~ias~~a~f~~-------pev-----~~G~---------~---g--- 138 (249) T PRK07938 86 AFRAVYECPVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGL-------PEV-----DRGA---------L---G--- 138 (249) T ss_pred HHHHHHHCCCCEEEEECCEEEEEEEEEEECCCHHHHCCCCEEEC-------CCC-----CCCC---------C---C--- T ss_conf 99999829998999975757661213120433444426877977-------565-----7511---------0---3--- Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH-HHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC Q ss_conf 6789999887777766666778999985149998899-8873498237889987798062389899999999741 Q gi|254780747|r 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293) Q Consensus 168 ~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~-~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293) T Consensus 139 -----~-~~~L-----------~rlv------G~~~A~el~ltg~~i~A~eA~~~GLvn~vv~~~~l~~~a~~~A 190 (249) T PRK07938 139 -----A-ATHL-----------SRLV------PQHLMRRLFFTAATIDAAELHHFGSVHEVVPRDELDEAALRVA 190 (249) T ss_pred -----H-HHHH-----------HHHH------CHHHHHHHHHHCCCCCHHHHHHCCCHHEEECHHHHHHHHHHHH T ss_conf -----7-7799-----------9982------6999999997298147999997797260308459999999999 |
|
| >PRK07510 consensus | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.9e-09 Score=76.83 Aligned_cols=162 Identities=21% Similarity=0.290 Sum_probs=107.1 Q ss_pred CCCEEEEEEEEEEECC-------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHH------------------H Q ss_conf 7872899997666238-------69999999998618998799997588----88888999------------------9 Q gi|254780747|r 34 NSPHVARIAIRGQIED-------SQELIERIERISRDDSATALIVSLSS----PGGSAYAG------------------E 84 (293) Q Consensus 34 ~~~~i~~i~i~G~I~~-------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~------------------~ 84 (293) T Consensus 11 ~~~~ia~itlnrP~~~NAl~~~m~~el~~~~~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~ 90 (266) T PRK07510 11 LDDGVLTITLNRPERRNALNDDLTRALVEAARRAADDPEVRAVLLTGAGGAFCAGGDVKSMAAARAAPPFEGAQRVANLR 90 (266) T ss_pred EECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHH T ss_conf 99999999975778789989999999999999986489945999978998605565789886144777632778999999 Q ss_pred HHHHHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCC Q ss_conf 9999999841-478679960332332232100011100013013534555653021024567774204225531552112 Q gi|254780747|r 85 AIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163 (293) Q Consensus 85 ~i~~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~ 163 (293) T Consensus 91 ~~~~~~~~i~~~~kPvIaav~G~a~GgG~~la~~cD~rias~~a~f~~~------------~~~~Gl~p~---------- 148 (266) T PRK07510 91 RRMEVSRLLHQMPKPTVAQIDGAAAGAGLSLALACDLRVAGASAKLTTA------------FAKVGLSGD---------- 148 (266) T ss_pred HHHHHHHHHHHCCCCEEEEECCEEEEHHHHHHHCCCCHHCCCCCEEECC------------CCCEECCCC---------- T ss_conf 9999999998399988999879776422567650460101544378457------------654302886---------- Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC Q ss_conf 346667899998877777666667789999851499988998873498237889987798062389899999999741 Q gi|254780747|r 164 PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293) Q Consensus 164 ~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293) T Consensus 149 ------~g~~--~~-----------l~r~iG~~~-----a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~la 202 (266) T PRK07510 149 ------FGGT--YF-----------LTRLVGPAK-----ARELYLTSPVLSAAEALALGLVNRVVPDAEVEAEARALA 202 (266) T ss_pred ------CCHH--HH-----------HHHHHHHHH-----HHHHHHHCCCCCHHHHHHCCCCCEEECHHHHHHHHHHHH T ss_conf ------3489--99-----------999962999-----999998299947999997797543458579999999999 |
|
| >PRK08139 enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.6e-09 Score=76.97 Aligned_cols=160 Identities=22% Similarity=0.314 Sum_probs=106.7 Q ss_pred CCCEEEEEEEEEEECC-------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHH---------H----HHHHH Q ss_conf 7872899997666238-------69999999998618998799997588----88888999---------9----99999 Q gi|254780747|r 34 NSPHVARIAIRGQIED-------SQELIERIERISRDDSATALIVSLSS----PGGSAYAG---------E----AIFRA 89 (293) Q Consensus 34 ~~~~i~~i~i~G~I~~-------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~---------~----~i~~a 89 (293) T Consensus 16 ~~~~Va~ItlnRP~~~Nal~~~m~~el~~~l~~~~~d~~vr~vvltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l 95 (265) T PRK08139 16 DRDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRADPGLAYFRALFARCSRV 95 (265) T ss_pred EECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHH T ss_conf 77999999976887678989999999999999997589935999967998642787868975556778899999999999 Q ss_pred HHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCC Q ss_conf 99841-47867996033233223210001110001301353455565302102456777420422553155211234666 Q gi|254780747|r 90 IQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168 (293) Q Consensus 90 i~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~ 168 (293) T Consensus 96 ~~~l~~~~kPvIaav~G~a~GgG~~lal~~D~~ias~~a~f~~pe~------------~~Gl~--------------~~~ 149 (265) T PRK08139 96 MQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGV------------NIGLF--------------CST 149 (265) T ss_pred HHHHHHCCCCEEEEECCEEEEEECHHHCCCCEEEECCCCCCCCCCC------------EECCC--------------CCC T ss_conf 9999859998999977823541401100476645326522038655------------36625--------------576 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC Q ss_conf 78999988777776666677899998514999889-98873498237889987798062389899999999741 Q gi|254780747|r 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293) Q Consensus 169 ~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~-~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293) T Consensus 150 ~~~~-----L-----------~------r~ig~~~a~~l~ltg~~~~A~eA~~~Glv~~vv~~~~l~~~a~~~a 201 (265) T PRK08139 150 PMVA-----L-----------S------RNVPRKQAMEMLLTGEFIDAATAREWGLVNRVVPADALDAAVARLA 201 (265) T ss_pred CHHH-----H-----------H------CCCHHHHHHHHHHCCCCCHHHHHHHCCCCEEECCHHHHHHHHHHHH T ss_conf 2654-----4-----------0------1000888899986478406999998798047628779999999999 |
|
| >PRK06210 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.9e-09 Score=76.30 Aligned_cols=161 Identities=18% Similarity=0.275 Sum_probs=106.7 Q ss_pred CCCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECC----CCCCCHHHHHHH---------------- Q ss_conf 787289999766623-8------6999999999861899879999758----888888999999---------------- Q gi|254780747|r 34 NSPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLS----SPGGSAYAGEAI---------------- 86 (293) Q Consensus 34 ~~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~----SpGG~~~~~~~i---------------- 86 (293) T Consensus 12 ~d~~Va~itlnrP~k~Nal~~~~~~eL~~~l~~~~~d~~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 91 (272) T PRK06210 12 ADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDGRRDTDVRPFVG 91 (272) T ss_pred ECCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEECCCCHHHHHHCCCCCCCCHHHHHHHHH T ss_conf 47988999974756268999999999999999997299907999978999665167779886068410000014557776 Q ss_pred ------HHHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECC Q ss_conf ------99999841-47867996033233223210001110001301353455565302102456777420422553155 Q gi|254780747|r 87 ------FRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSP 159 (293) Q Consensus 87 ------~~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~ 159 (293) T Consensus 92 ~~~~~~~~~~~~~~~~~kPvIaav~G~a~GgG~~la~~cD~rias~~a~f~~-------p~~-----~~Gl~p~------ 153 (272) T PRK06210 92 NRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTT-------AFA-----RRGLIAE------ 153 (272) T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCEEEECCCEEEECCCCEEEC-------CCC-----CCCCCCC------ T ss_conf 5426789999999848998899982366048751221365434247757966-------745-----5276887------ Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHH Q ss_conf 2112346667899998877777666667789999851499988-998873498237889987798062389899999999 Q gi|254780747|r 160 MKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 (293) Q Consensus 160 ~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~-~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~ 238 (293) T Consensus 154 ---~g-----~~----~~l~-----------r~------iG~~~a~el~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~ 204 (272) T PRK06210 154 ---HG-----IS----WILP-----------RL------VGHANALDLLLSARTFYAEEALRLGLVNRVVPPDELMERTL 204 (272) T ss_pred ---CC-----HH----HHHH-----------HH------HHHHHHHHHHHCCCCCCHHHHHHCCCCEEECCHHHHHHHHH T ss_conf ---32-----99----9999-----------98------76999999998499998899997798527538158999999 Q ss_pred HHC Q ss_conf 741 Q gi|254780747|r 239 ALG 241 (293) Q Consensus 239 ~~~ 241 (293) T Consensus 205 ~~a 207 (272) T PRK06210 205 AYA 207 (272) T ss_pred HHH T ss_conf 999 |
|
| >PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.9e-09 Score=77.42 Aligned_cols=162 Identities=18% Similarity=0.252 Sum_probs=104.9 Q ss_pred CCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHH------------------HH Q ss_conf 87289999766623-8------69999999998618998799997588----88888999------------------99 Q gi|254780747|r 35 SPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLSS----PGGSAYAG------------------EA 85 (293) Q Consensus 35 ~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~------------------~~ 85 (293) T Consensus 11 ~~gIa~ItlnrP~~~Nal~~~m~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~D~~~l~~~~~~~~~~~~~~~~~~~~ 90 (257) T PRK07110 11 EEGIAQVTMQDRENKNAFSDELVRQLHGAFDTIAQDPRCKVVILTGYPNYFATGGTQEGLLSLSEGKGTFTDYKTNIEHE 90 (257) T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHH T ss_conf 89989999738887899899999999999999976899169999889986525666788875441553114678889999 Q ss_pred HHHHHHHH-CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCC Q ss_conf 99999984-14786799603323322321000111000130135345556530210245677742042255315521123 Q gi|254780747|r 86 IFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEP 164 (293) Q Consensus 86 i~~ai~~~-k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~ 164 (293) T Consensus 91 ~~~~~~~~~~~~kPvIaavnG~a~GgG~~lal~cD~ria~~~a~f~~-------pe-----~~lGl~p~----------- 147 (257) T PRK07110 91 YANLYSLALNCPIPVIAAMQGHAIGGGFVMGLYADFVVLSEESVYTT-------NF-----MKYGFTPG----------- 147 (257) T ss_pred HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCEEEECCCCEEEC-------CC-----CCCCCCCC----------- T ss_conf 99999999819998999978788577689973268789869977977-------50-----05675977----------- Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCC Q ss_conf 466678999988777776666677899998514999889988734982378899877980623898999999997418 Q gi|254780747|r 165 SPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 (293) Q Consensus 165 ~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~~ 242 (293) T Consensus 148 -----~g--~~~~l-----------~~~vG~~~-----a~~llltg~~i~a~eA~~~Glv~~vvp~~~l~~~a~~~A~ 202 (257) T PRK07110 148 -----MG--ATAIL-----------PEKLGYYL-----GQEMLLTARSYRGAELQKRGVPFPVLPRAEVLEKALELAR 202 (257) T ss_pred -----CC--HHHHH-----------HHHHHHHH-----HHHHHHCCCCCCHHHHHHCCCCCEEECHHHHHHHHHHHHH T ss_conf -----43--99999-----------99866999-----9999984997689999974987467786389999999999 |
|
| >PRK09245 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.4e-09 Score=76.55 Aligned_cols=162 Identities=23% Similarity=0.300 Sum_probs=106.9 Q ss_pred CCCEEEEEEEEEEE-----CC---HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHHH---------------H- Q ss_conf 78728999976662-----38---69999999998618998799997588----888889999---------------9- Q gi|254780747|r 34 NSPHVARIAIRGQI-----ED---SQELIERIERISRDDSATALIVSLSS----PGGSAYAGE---------------A- 85 (293) Q Consensus 34 ~~~~i~~i~i~G~I-----~~---~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~~---------------~- 85 (293) T Consensus 9 ~~~~Va~itlnrP~~~Nal~~~~~~~el~~~l~~~~~d~~vrvvVitg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 88 (266) T PRK09245 9 RDGHIVTLTMNRPETRNALSGNDAVDALVAACARINADRSVRAVILTGAGTAFSSGGNVKDMRARAGAFGGSPADIRQGY 88 (266) T ss_pred EECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEECCCCHHHHHHHCCCCCCCHHHHHHHH T ss_conf 99999999975867467879999999999999988409982699997888704256568999753156667677899999 Q ss_pred ---HHHHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCC Q ss_conf ---999999841-4786799603323322321000111000130135345556530210245677742042255315521 Q gi|254780747|r 86 ---IFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161 (293) Q Consensus 86 ---i~~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K 161 (293) T Consensus 89 ~~~~~~~~~~i~~~~kPvIaai~G~a~GgG~~lal~cD~~va~~~a~f~~-------pe-----~~~Gi~p~-------- 148 (266) T PRK09245 89 RRGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAE-------SF-----VKLGLIPG-------- 148 (266) T ss_pred HHHHHHHHHHHHHCCCCEEEEECCEECCCHHHHHHCCCEEEECCCCEEEC-------CC-----CCCCCCCC-------- T ss_conf 99999999999838998899982666253057776077545135757967-------40-----27655877-------- Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC Q ss_conf 12346667899998877777666667789999851499988998873498237889987798062389899999999741 Q gi|254780747|r 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293) Q Consensus 162 ~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293) T Consensus 149 --------~g~~--~~-----------l~r~iG~~~-----a~el~ltg~~~~a~eA~~~Glv~~vv~~~el~~~a~~~a 202 (266) T PRK09245 149 --------DGGA--WL-----------LPRIIGMAR-----AAEMAFTGDAIDAATALEWGLVSRVVPADQLLPAARALA 202 (266) T ss_pred --------CCHH--HH-----------HHHHHHHHH-----HHHHHHCCCCCCHHHHHHCCCCEEEECHHHHHHHHHHHH T ss_conf --------6799--99-----------999974999-----999998199987999998798417508678999999999 |
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.1e-10 Score=81.42 Aligned_cols=160 Identities=17% Similarity=0.182 Sum_probs=104.7 Q ss_pred CCCCCEEEEEEEEEE-ECC------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHH---------------HH Q ss_conf 677872899997666-238------69999999998618998799997588----88888999---------------99 Q gi|254780747|r 32 EDNSPHVARIAIRGQ-IED------SQELIERIERISRDDSATALIVSLSS----PGGSAYAG---------------EA 85 (293) Q Consensus 32 ~~~~~~i~~i~i~G~-I~~------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~---------------~~ 85 (293) T Consensus 11 ~~~~DGVA~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~AGaDl~e~~~~~~~~~~~~~~~~~~ 90 (715) T PRK11730 11 DWLEDGIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFAVPEEELSQWLHF 90 (715) T ss_pred EEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEECCCHHHHHHCCCCCHHHHHHHHHH T ss_conf 99458889999638876789899999999999999850999759999789981572708787852546887889888888 Q ss_pred HHHHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCC Q ss_conf 999999841-4786799603323322321000111000130135345556530210245677742042255315521123 Q gi|254780747|r 86 IFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEP 164 (293) Q Consensus 86 i~~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~ 164 (293) T Consensus 91 ~~~~~~~ie~~~kPvIAAI~G~AlGgGlelALacd~Rias~~a~~g~pev------------~lGl~p---------g~G 149 (715) T PRK11730 91 ANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPTARIGLPET------------KLGIMP---------GFG 149 (715) T ss_pred HHHHHHHHHCCCCCEEEEECCEEEHHHHHHHHHCCEEEECCCCEEECCCC------------CCCCCC---------CCC T ss_conf 89999999719998899988884279899999689999639988978654------------757287---------984 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHH Q ss_conf 46667899998877777666667789999851499988-998873498237889987798062389899999999 Q gi|254780747|r 165 SPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 (293) Q Consensus 165 ~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~-~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~ 238 (293) T Consensus 150 gt---------~rLp-----------------rliG~~~A~~l~l~G~~~~a~~A~~~GLvd~vv~~~~L~~~A~ 198 (715) T PRK11730 150 GT---------VRLP-----------------RLIGADNALEWIAAGKDVRAEDALKVGAVDAVVAPEKLQEAAL 198 (715) T ss_pred HH---------HHHH-----------------HHCCHHHHHHHHHHCCCCCHHHHHHCCCCCEECCHHHHHHHHH T ss_conf 25---------3754-----------------1326999973541179788999986898646258067899999 |
|
| >PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.7e-09 Score=76.92 Aligned_cols=160 Identities=14% Similarity=0.166 Sum_probs=109.2 Q ss_pred CCCEEEEEEEEEEEC----C---HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHH---------------HHHHHH Q ss_conf 787289999766623----8---69999999998618998799997588----888889---------------999999 Q gi|254780747|r 34 NSPHVARIAIRGQIE----D---SQELIERIERISRDDSATALIVSLSS----PGGSAY---------------AGEAIF 87 (293) Q Consensus 34 ~~~~i~~i~i~G~I~----~---~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~---------------~~~~i~ 87 (293) T Consensus 12 ~~~GVa~itLnRP~~~Nal~~~m~~~l~~al~~~~~d~~vr~vvltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~ 91 (271) T PRK05674 12 DPRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLDYNTNLDDARELA 91 (271) T ss_pred CCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEECCCCHHHHHHCCCCCCCCCHHHHHHHH T ss_conf 49978999972878668989999999999999886589917999988999732787347665324566100267899999 Q ss_pred HHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCC Q ss_conf 9999841-478679960332332232100011100013013534555653021024567774204225531552112346 Q gi|254780747|r 88 RAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 (293) Q Consensus 88 ~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p 166 (293) T Consensus 92 ~~~~~i~~~~kPvIaaV~G~a~GgG~~lal~cD~~ia~~~a~f~~pe-------~-----~lGl~p~---------~~~- 149 (271) T PRK05674 92 ELMYALARLKIPTLAVVQGAAFGGALGLISCCDMAIGAEDAQFCLSE-------V-----RIGLAPA---------VIS- 149 (271) T ss_pred HHHHHHHHCCCCEEEEECCHHHEHHHHHHHHCCEEECCCCCEEECCC-------C-----CEEECCC---------CHH- T ss_conf 99999996899899997783002468887630622211156160545-------5-----4667456---------148- Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC Q ss_conf 667899998877777666667789999851499988-998873498237889987798062389899999999741 Q gi|254780747|r 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293) Q Consensus 167 ~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~-~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293) T Consensus 150 --------------------~~l~~~i------G~~~A~~llltg~~~sA~eA~~~Glv~~vv~~~el~~~a~~~a 199 (271) T PRK05674 150 --------------------PFVVKAI------GERAARRYALTAERFDGRRARELGLLAESYPAAELDAQVEAWI 199 (271) T ss_pred --------------------HHHHHHH------HHHHHHHHHHHCCCCCHHHHHHCCCEEEEECHHHHHHHHHHHH T ss_conf --------------------7899996------3999999998489347999998799206857779999999999 |
|
| >PRK06023 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.9e-09 Score=76.80 Aligned_cols=160 Identities=18% Similarity=0.225 Sum_probs=107.2 Q ss_pred CCEEEEEEEEEEE-C---C---HHHHHHHHHHHHCCCCCCEEEEECC----CCCCCHHH-----------HHHHHHHHHH Q ss_conf 8728999976662-3---8---6999999999861899879999758----88888899-----------9999999998 Q gi|254780747|r 35 SPHVARIAIRGQI-E---D---SQELIERIERISRDDSATALIVSLS----SPGGSAYA-----------GEAIFRAIQK 92 (293) Q Consensus 35 ~~~i~~i~i~G~I-~---~---~~~l~~~l~~a~~d~~ik~ivL~i~----SpGG~~~~-----------~~~i~~ai~~ 92 (293) T Consensus 10 ~~~va~ItlNrPek~Nals~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (248) T PRK06023 10 KGAVQVIRFNRPEKKNAITRAMYAAMAKALKAGDADDAIRAHVFLGVPGAFSSGNDMQDFMAAAMGGTSFGSEILDFLIA 89 (248) T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHH T ss_conf 99999999748888899899999999999999854899369999789986608988688864123551457999999999 Q ss_pred HC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCC Q ss_conf 41-47867996033233223210001110001301353455565302102456777420422553155211234666789 Q gi|254780747|r 93 VK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171 (293) Q Consensus 93 ~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s 171 (293) T Consensus 90 l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~p~------------~~~Gl~p~----------------~g 141 (248) T PRK06023 90 LAETEKPIVSGVDGLAIGIGTTIHLHCDLTFATPRSLFRTPF------------VDLGLVPE----------------AG 141 (248) T ss_pred HHHCCCCEEEEEECEEEHHHHHHHHCCCEEEECCCCEEECHH------------CCEEECCC----------------CC T ss_conf 995899899998153301468997234645634786382320------------26734876----------------52 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC Q ss_conf 99988777776666677899998514999889-98873498237889987798062389899999999741 Q gi|254780747|r 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293) Q Consensus 172 ~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~-~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293) T Consensus 142 ~--~~~l~-----------r~------iG~~~a~~llltg~~~~A~eA~~~Glv~~vv~~~~l~~~a~~~A 193 (248) T PRK06023 142 S--SLLAP-----------RL------MGHQRAFALLALGEGFSAEAAQEAGLIYKIVDEEALEAEVLKAA 193 (248) T ss_pred H--HHHHH-----------HH------HHHHHHHHHHHCCCCCCHHHHHHCCCCCEECCHHHHHHHHHHHH T ss_conf 9--99999-----------99------74999999998399410999816899133358689999999999 |
|
| >PRK05862 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.2e-09 Score=76.17 Aligned_cols=161 Identities=25% Similarity=0.298 Sum_probs=108.0 Q ss_pred CCEEEEEEEEEEECC-------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHH----------HHHHHHHHHH Q ss_conf 872899997666238-------69999999998618998799997588----88888999----------9999999984 Q gi|254780747|r 35 SPHVARIAIRGQIED-------SQELIERIERISRDDSATALIVSLSS----PGGSAYAG----------EAIFRAIQKV 93 (293) Q Consensus 35 ~~~i~~i~i~G~I~~-------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~----------~~i~~ai~~~ 93 (293) T Consensus 11 ~~~Ia~itlnrp~~~Nal~~~m~~el~~~~~~~~~d~~vrvvvl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~l 90 (257) T PRK05862 11 RGRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSFMDVYKGDYITNWEKV 90 (257) T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHHHCCCCHHHHHHHHHHHHHHHH T ss_conf 99999999758998789899999999999999985999359999889983146878577435661557777799999999 Q ss_pred C-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCH Q ss_conf 1-478679960332332232100011100013013534555653021024567774204225531552112346667899 Q gi|254780747|r 94 K-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 (293) Q Consensus 94 k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~ 172 (293) T Consensus 91 ~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~p------------~~~~Gl~p~----------------~g~ 142 (257) T PRK05862 91 ARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQP------------EIKLGVLPG----------------MGG 142 (257) T ss_pred HHCCCCEEEEECCEEECCHHHHHHHCCEEECCCCCEEECH------------HHCCCCCCC----------------CCH T ss_conf 8589998999768860424588773453130478637154------------420466888----------------459 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC Q ss_conf 998877777666667789999851499988998873498237889987798062389899999999741 Q gi|254780747|r 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293) Q Consensus 173 e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293) T Consensus 143 ~--~~l-----------~r~iG~~~-----a~~llltg~~~~a~ea~~~Glv~~v~~~~~l~~~a~~~a 193 (257) T PRK05862 143 S--QRL-----------TRAVGKAK-----AMDLCLTGRMMDAAEAERAGLVSRVVPADKLLDEALAAA 193 (257) T ss_pred H--HHH-----------HHHHHHHH-----HHHHHHHCCCCCHHHHHHCCCCEEECCHHHHHHHHHHHH T ss_conf 9--999-----------99987999-----999998289986999998799147638458999999999 |
|
| >PRK06190 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=3e-09 Score=78.16 Aligned_cols=160 Identities=17% Similarity=0.257 Sum_probs=105.4 Q ss_pred CCEEEEEEEEEEEC----C---HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHH----------HHHHHHHHHHHH Q ss_conf 87289999766623----8---69999999998618998799997588----888889----------999999999984 Q gi|254780747|r 35 SPHVARIAIRGQIE----D---SQELIERIERISRDDSATALIVSLSS----PGGSAY----------AGEAIFRAIQKV 93 (293) Q Consensus 35 ~~~i~~i~i~G~I~----~---~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~----------~~~~i~~ai~~~ 93 (293) T Consensus 11 ~~~Va~ItlnRP~~~Nal~~~m~~el~~al~~~~~d~~vrvvVltg~G~~FcAG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 90 (258) T PRK06190 11 HDRVRTLTLNRPQARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGLAYGAADALPDIVPAW 90 (258) T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHH T ss_conf 89999999758998899899999999999998865899369999789987528879788704641013566688999999 Q ss_pred C-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCH Q ss_conf 1-478679960332332232100011100013013534555653021024567774204225531552112346667899 Q gi|254780747|r 94 K-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 (293) Q Consensus 94 k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~ 172 (293) T Consensus 91 ~~~~kPvIAav~G~a~GgG~~lal~cD~~ias~~a~f~~pe------------~~~Gl~p~---------~-----g~~- 143 (258) T PRK06190 91 PAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTH------------ARVGILPG---------W-----GLS- 143 (258) T ss_pred HHCCCCEEEEECCCHHHHHHHHHHCCCEEEECCCCEEECCC------------CCCCCCCC---------C-----CHH- T ss_conf 96899999997770304438987247668855981897852------------21287998---------6-----599- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC Q ss_conf 9988777776666677899998514999889-98873498237889987798062389899999999741 Q gi|254780747|r 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293) Q Consensus 173 e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~-~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293) T Consensus 144 ---~-----------~L~r~v------G~~~A~ellltg~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~A 193 (258) T PRK06190 144 ---V-----------RLPQKV------GIGRARRMSLTGNFLDAEDALRAGLVTEVVPHDELLPAARRLA 193 (258) T ss_pred ---H-----------HHHHHH------CHHHHHHHHHCCCCCCHHHHHHCCCCCEEECHHHHHHHHHHHH T ss_conf ---9-----------999997------9999999998099985999997797434508569999999999 |
|
| >PRK05980 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=7.1e-09 Score=75.82 Aligned_cols=160 Identities=22% Similarity=0.291 Sum_probs=105.8 Q ss_pred CCEEEEEEEEEEEC----C---HHHHHHHHHHHHCCCCCCEEEEECCC-----CCCCHHHH---------HHH------- Q ss_conf 87289999766623----8---69999999998618998799997588-----88888999---------999------- Q gi|254780747|r 35 SPHVARIAIRGQIE----D---SQELIERIERISRDDSATALIVSLSS-----PGGSAYAG---------EAI------- 86 (293) Q Consensus 35 ~~~i~~i~i~G~I~----~---~~~l~~~l~~a~~d~~ik~ivL~i~S-----pGG~~~~~---------~~i------- 86 (293) T Consensus 10 ~~~va~itlnrP~~~Nal~~~~~~~l~~~l~~~~~d~~ir~vVl~g~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~ 89 (260) T PRK05980 10 RDGIALLTLNRPEKLNALSYALIDRLMARLDAIEVDESVRAVILTGAGERAFSAGADIHEFSASVAAGPDVALRDFVRRG 89 (260) T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEECCCCHHHHHHHCCCCCHHHHHHHHHHH T ss_conf 99999999737675799999999999999999862999339999669983443576767641210147247899999999 Q ss_pred HHHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCC Q ss_conf 99999841-47867996033233223210001110001301353455565302102456777420422553155211234 Q gi|254780747|r 87 FRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165 (293) Q Consensus 87 ~~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~ 165 (293) T Consensus 90 ~~~~~~l~~~~kPvIa~v~G~a~GgG~~lal~cD~~ia~~~a~f~~pe------------~~~Gl~p~------------ 145 (260) T PRK05980 90 QTMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERARFAKPE------------IKLAMPPT------------ 145 (260) T ss_pred HHHHHHHHHCCCCEEEEECCEEEECCCHHHHHCCCCCCCCCCEECCCC------------CCEEECCC------------ T ss_conf 999999997899989997788877753544204130147778353752------------51753877------------ Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC Q ss_conf 66678999988777776666677899998514999889-98873498237889987798062389899999999741 Q gi|254780747|r 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293) Q Consensus 166 p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~-~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293) T Consensus 146 ----~g~~--~~l-----------~r~------iG~~~A~~~~l~g~~i~a~eA~~~Glv~~vv~~~~l~~~a~~la 199 (260) T PRK05980 146 ----FGGT--QRL-----------PRL------AGRKRALELLLTGDAFSAQRALEIGLVNAVVPHDELIPAARALA 199 (260) T ss_pred ----CCHH--HHH-----------HHH------HHHHHHHHHHHCCCCCCHHHHHHCCCCCEEECHHHHHHHHHHHH T ss_conf ----3679--999-----------999------64999999998099868999987699716528668999999999 |
|
| >PRK03580 carnitinyl-CoA dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.5e-09 Score=76.51 Aligned_cols=161 Identities=21% Similarity=0.246 Sum_probs=107.9 Q ss_pred CCEEEEEEEEEEECC------HHHHHHHHHHHHCCCCCCEEEEECCC-----CCCCHHHHH-----------HHHHHHHH Q ss_conf 872899997666238------69999999998618998799997588-----888889999-----------99999998 Q gi|254780747|r 35 SPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSS-----PGGSAYAGE-----------AIFRAIQK 92 (293) Q Consensus 35 ~~~i~~i~i~G~I~~------~~~l~~~l~~a~~d~~ik~ivL~i~S-----pGG~~~~~~-----------~i~~ai~~ 92 (293) T Consensus 11 ~g~Va~itlnrP~~NAl~~~m~~~l~~al~~~~~d~~vrvvvltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 90 (262) T PRK03580 11 NGSILEITLDRPKANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTE 90 (262) T ss_pred ECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHHHHHCCCCCCHHHHHHHHHHHHH T ss_conf 99999999558764779999999999999998619996599996699960426710766534786431342667899999 Q ss_pred HC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCC Q ss_conf 41-47867996033233223210001110001301353455565302102456777420422553155211234666789 Q gi|254780747|r 93 VK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171 (293) Q Consensus 93 ~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s 171 (293) T Consensus 91 l~~~~kPvIaaV~G~a~GgG~~LalacD~~ia~~~a~f~~pe~------------~lGl~p~----------------~g 142 (262) T PRK03580 91 IFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEA------------KLGIVPD----------------SG 142 (262) T ss_pred HHHCCCCEEEEECCEEEEHHHHHHHHCCEEEECCCCCEECHHH------------CCCCCCC----------------CC T ss_conf 9819999999986866618699988527024147876515776------------0367888----------------54 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC Q ss_conf 9998877777666667789999851499988998873498237889987798062389899999999741 Q gi|254780747|r 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293) Q Consensus 172 ~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293) T Consensus 143 ~--~~-----------~l~r~iG~~~-----A~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~la 194 (262) T PRK03580 143 G--VL-----------RLPKRLPPAI-----VNEMLMTGRRMDAEEALRWGLVNRVVSQAELMDRARELA 194 (262) T ss_pred H--HH-----------HHHHHHHHHH-----HHHHHHCCCCCCHHHHHHCCCEEEECCHHHHHHHHHHHH T ss_conf 9--99-----------9999970999-----999987189875999988799105438469999999999 |
|
| >PRK06143 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1e-08 Score=74.87 Aligned_cols=165 Identities=20% Similarity=0.262 Sum_probs=110.2 Q ss_pred CCCCCCCEEEEEEEEEEEC----C---HHHHHHHHHHHHCCCCCCEEEEECC-----CCCCCHHH------------HHH Q ss_conf 5567787289999766623----8---6999999999861899879999758-----88888899------------999 Q gi|254780747|r 30 HVEDNSPHVARIAIRGQIE----D---SQELIERIERISRDDSATALIVSLS-----SPGGSAYA------------GEA 85 (293) Q Consensus 30 ~~~~~~~~i~~i~i~G~I~----~---~~~l~~~l~~a~~d~~ik~ivL~i~-----SpGG~~~~------------~~~ 85 (293) T Consensus 11 ~v~~~e~gVa~ItlnrP~~~Nal~~~m~~eL~~~~~~~~~d~~vrvvVltg~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~ 90 (260) T PRK06143 11 GVTRDDRGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEAFISR 90 (260) T ss_pred EEEEECCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHCCHHHHHHHHHH T ss_conf 48980898899997589887999999999999999988538995599996588776348856798861596568999999 Q ss_pred HHHHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCC Q ss_conf 999999841-4786799603323322321000111000130135345556530210245677742042255315521123 Q gi|254780747|r 86 IFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEP 164 (293) Q Consensus 86 i~~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~ 164 (293) T Consensus 91 ~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~~ias~~a~f~~-------pe-----~~~Gi-p~---------~- 147 (260) T PRK06143 91 LRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGM-------PE-----VRVGI-PS---------V- 147 (260) T ss_pred HHHHHHHHHHCCCCEEEEECCEEECCCHHHHHCCCEEEECCCCCEEC-------CC-----CCCCC-CC---------C- T ss_conf 99999999948998899987961104257664477653223652317-------10-----15575-88---------6- Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC Q ss_conf 46667899998877777666667789999851499988998873498237889987798062389899999999741 Q gi|254780747|r 165 SPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293) Q Consensus 165 ~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293) T Consensus 148 -----~~---~~~l-----------~r~iG~~~-----A~el~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~A 200 (260) T PRK06143 148 -----IH---AALL-----------PRLIGWAR-----TRWLLLTGETIDAAQALAWGLVDRVVPLAELDAAVERLA 200 (260) T ss_pred -----CH---HHHH-----------HHHHHHHH-----HHHHHHCCCCCCHHHHHHCCCCCEECCHHHHHHHHHHHH T ss_conf -----38---9999-----------99987999-----999998599888999998496143518579999999999 |
|
| >PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.8e-09 Score=76.36 Aligned_cols=161 Identities=17% Similarity=0.255 Sum_probs=105.9 Q ss_pred CCEEEEEEEEEEEC----C---HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHH------------HHH----- Q ss_conf 87289999766623----8---69999999998618998799997588----88888999------------999----- Q gi|254780747|r 35 SPHVARIAIRGQIE----D---SQELIERIERISRDDSATALIVSLSS----PGGSAYAG------------EAI----- 86 (293) Q Consensus 35 ~~~i~~i~i~G~I~----~---~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~------------~~i----- 86 (293) T Consensus 16 ~~~Va~itlnRP~~~NAl~~~m~~eL~~al~~~~~d~~vrvvVltG~G~~FcaG~Dl~e~~~~~~~~~~~~~~~~~~~~~ 95 (277) T PRK09120 16 EDGIAWVTLNRPEKRNAMSPTLNREMIDVLDELEFDDDAGVLVLTGEGEAWTAGMDLKEYFRETDAQPEILQEKIRRESS 95 (277) T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHHHHHCCCCCCHHHHHHHHHHHH T ss_conf 99999999778776789999999999999999972999559999889997246868899852144663356899999876 Q ss_pred HHHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCC Q ss_conf 99999841-47867996033233223210001110001301353455565302102456777420422553155211234 Q gi|254780747|r 87 FRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPS 165 (293) Q Consensus 87 ~~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~ 165 (293) T Consensus 96 ~~~~~~l~~~~kPvIAaVnG~a~GgG~~lalacDi~ia~~~A~f~~pe------------~~~Gl~p~---------~g- 153 (277) T PRK09120 96 GWQWRRLRMYAKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSE------------INWGIPPG---------GL- 153 (277) T ss_pred HHHHHHHHCCCCCEEEEECCEEEHHHHHHHHHHHHHHHCCCCEEECCC------------CCCCCCCC---------CC- T ss_conf 899999971899999998884540779999975111105582895772------------03587888---------66- Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC Q ss_conf 6667899998877777666667789999851499988998873498237889987798062389899999999741 Q gi|254780747|r 166 PFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293) Q Consensus 166 p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293) T Consensus 154 ----~~---------------~~l~r~vG~~~-----A~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~lA 205 (277) T PRK09120 154 ----VS---------------KAMADTVGHRD-----ALYYIMTGETFDGRKAAEMGLVNESVPLAQLRARVRELA 205 (277) T ss_pred ----HH---------------HHHHHHHCHHH-----HHHHHHHCCCCCHHHHHHCCCCCEEECHHHHHHHHHHHH T ss_conf ----89---------------99999969799-----999986389377999998799505608889999999999 |
|
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.6e-09 Score=78.57 Aligned_cols=164 Identities=17% Similarity=0.225 Sum_probs=106.8 Q ss_pred CCCCCCEEEEEEEEEE--ECC------HHHHHHHHHHHHCCCCCCEEEEECC-----CCCCCHHH---------H----H Q ss_conf 5677872899997666--238------6999999999861899879999758-----88888899---------9----9 Q gi|254780747|r 31 VEDNSPHVARIAIRGQ--IED------SQELIERIERISRDDSATALIVSLS-----SPGGSAYA---------G----E 84 (293) Q Consensus 31 ~~~~~~~i~~i~i~G~--I~~------~~~l~~~l~~a~~d~~ik~ivL~i~-----SpGG~~~~---------~----~ 84 (293) T Consensus 9 ~~~~~dgIa~itlnrP~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~sg~g~~F~AGaDl~~~~~~~~~~~~~~~~~ 88 (706) T PRK11154 9 LNVRLDNIAILTIDVPGEKMNTLKAEFAEQVRAILKQIKEDKSLKGVVFISGKPDNFIAGADINMLAACKTAQEAEALAR 88 (706) T ss_pred EEECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEECCCHHHHHCCCCHHHHHHHHH T ss_conf 99867998999989999776789999999999999998509996699995179980470729776724787577999998 Q ss_pred HHHHHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHH--HHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCC Q ss_conf 9999999841-478679960332332232100011100013013--5345556530210245677742042255315521 Q gi|254780747|r 85 AIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETS--LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161 (293) Q Consensus 85 ~i~~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s--~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K 161 (293) T Consensus 89 ~~~~~~~~i~~~~kPvIAAvnG~a~GgG~ElaLacD~RiAs~~a~~~~g~Pev------------~lGl~P--------- 147 (706) T PRK11154 89 QGQQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEV------------QLGLLP--------- 147 (706) T ss_pred HHHHHHHHHHHCCCCEEEEECCEEEHHHHHHHHHCCEEEECCCCCCCCCCCCC------------EECCCC--------- T ss_conf 88999999980999889998786418999999968999961784632136431------------027788--------- Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHH Q ss_conf 12346667899998877777666667789999851499988-99887349823788998779806238989999999974 Q gi|254780747|r 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 (293) Q Consensus 162 ~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~-~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~ 240 (293) T Consensus 148 g~Ggt---------~rLp-----------------RliG~~~A~eliltG~~i~A~eA~~~GLVd~VVp~~~L~~~A~~~ 201 (706) T PRK11154 148 GSGGT---------QRLP-----------------RLIGVSTALDMILTGKQLRAKQALKLGLVDDVVPQSILLEVAVEL 201 (706) T ss_pred CCCCH---------HHCC-----------------HHCCHHHHHHHHHCCCCCCHHHHHHCCCCCEECCCHHHHHHHHHH T ss_conf 99724---------0221-----------------123899999764007878899999779875515908999999999 Q ss_pred C Q ss_conf 1 Q gi|254780747|r 241 G 241 (293) Q Consensus 241 ~ 241 (293) T Consensus 202 a 202 (706) T PRK11154 202 A 202 (706) T ss_pred H T ss_conf 9 |
|
| >PRK07629 consensus | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.3e-09 Score=75.72 Aligned_cols=160 Identities=20% Similarity=0.245 Sum_probs=107.0 Q ss_pred CCCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHH---------------HHHH Q ss_conf 787289999766623-8------69999999998618998799997588----88888999---------------9999 Q gi|254780747|r 34 NSPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLSS----PGGSAYAG---------------EAIF 87 (293) Q Consensus 34 ~~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~---------------~~i~ 87 (293) T Consensus 10 ~~~~va~itlnrP~~~Nal~~~m~~el~~a~~~~~~d~~vrvvvltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~ 89 (261) T PRK07629 10 QAGRVATVTLNRPDVRNAFNETMIAELTAAFRALDADDDVRAVVLAARGPAFCAGADLNWMKRMAGYSDDENRADARKLA 89 (261) T ss_pred EECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHHHHHHCCCCHHHHHHHHHHHH T ss_conf 99999999976847568979999999999999996299916999977998214676708888511367255677799999 Q ss_pred HHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCC Q ss_conf 9999841-478679960332332232100011100013013534555653021024567774204225531552112346 Q gi|254780747|r 88 RAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 (293) Q Consensus 88 ~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p 166 (293) T Consensus 90 ~~~~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~p~------------~~~Gl~p~---------~~~- 147 (261) T PRK07629 90 RMLRTIYECPKPTIARVHGDAYAGGMGLVAACDIAVAADTAKFCLSE------------VRLGLIPA---------TIS- 147 (261) T ss_pred HHHHHHHHCCCCEEEEECCEEECCHHHHHHHCCEEECCCCCEEECHH------------CCCCCCCC---------CHH- T ss_conf 99999995899899997895443607997733421314787575510------------34461777---------558- Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC Q ss_conf 6678999988777776666677899998514999889-98873498237889987798062389899999999741 Q gi|254780747|r 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293) Q Consensus 167 ~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~-~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293) T Consensus 148 --------------------~~~~r~i------G~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~A 197 (261) T PRK07629 148 --------------------PYVIRAM------GERAARRYFLTAERFDAAEALRLGFVHEVVPADALDAKVAELA 197 (261) T ss_pred --------------------HHHHHHH------CHHHHHHHHHHCCCCCHHHHHHCCCCEEECCHHHHHHHHHHHH T ss_conf --------------------8999997------8999999998687226999997798618738679999999999 |
|
| >PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated | Back alignment and domain information |
|---|
Probab=99.04 E-value=8.4e-09 Score=75.33 Aligned_cols=161 Identities=22% Similarity=0.323 Sum_probs=108.3 Q ss_pred CCEEEEEEEEEEEC----C---HHHHHHHHHHHHCCCCCCEEEEECCC-----CCCCHHHH--------HHH----HHHH Q ss_conf 87289999766623----8---69999999998618998799997588-----88888999--------999----9999 Q gi|254780747|r 35 SPHVARIAIRGQIE----D---SQELIERIERISRDDSATALIVSLSS-----PGGSAYAG--------EAI----FRAI 90 (293) Q Consensus 35 ~~~i~~i~i~G~I~----~---~~~l~~~l~~a~~d~~ik~ivL~i~S-----pGG~~~~~--------~~i----~~ai 90 (293) T Consensus 11 ~~~va~itlnrP~~~Nal~~~~~~el~~al~~~~~d~~vr~vvl~g~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~ 90 (260) T PRK05809 11 EGNIAVVTINRPKALNALNSETLKELDTVLDDLENDDNVYAVILTGAGEKAFVAGADISEMKDLNEEEGRKFGLLGNKVF 90 (260) T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEECCCCHHHHHHCCHHHHHHHHHHHHHHH T ss_conf 99999999758987789799999999999999986899569999668988740799747653068767899999999999 Q ss_pred HHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCC Q ss_conf 9841-478679960332332232100011100013013534555653021024567774204225531552112346667 Q gi|254780747|r 91 QKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 (293) Q Consensus 91 ~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~ 169 (293) T Consensus 91 ~~l~~~~kPvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe------------~~~Gl~p~---------------- 142 (260) T PRK05809 91 RRLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPE------------VGLGITPG---------------- 142 (260) T ss_pred HHHHHCCCCEEEEECCEEEECCHHHHHHCCEEEECCCCEEECCH------------HCCCCCCC---------------- T ss_conf 99983899889997596666502765420134515897286520------------02345887---------------- Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH-HHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCC Q ss_conf 89999887777766666778999985149998899-88734982378899877980623898999999997418 Q gi|254780747|r 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 (293) Q Consensus 170 ~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~-~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~~ 242 (293) T Consensus 143 ~g~--~~~-----------l~~~------iG~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~la~ 197 (260) T PRK05809 143 FGG--TQR-----------LARI------VGPGKAKELIYTGDMIKAEEALRIGLVNKVVEPEKLMEEAKALAN 197 (260) T ss_pred CCH--HHH-----------HHHH------HCHHHHHHHHHCCCCCCHHHHHHCCCCCEEECHHHHHHHHHHHHH T ss_conf 448--999-----------9998------599999999970982579999987997087484689999999999 |
|
| >cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.1e-09 Score=75.12 Aligned_cols=160 Identities=24% Similarity=0.301 Sum_probs=108.4 Q ss_pred CCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECC----CCCCCHHH--------------HHHHHHH Q ss_conf 87289999766623-8------6999999999861899879999758----88888899--------------9999999 Q gi|254780747|r 35 SPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLS----SPGGSAYA--------------GEAIFRA 89 (293) Q Consensus 35 ~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~----SpGG~~~~--------------~~~i~~a 89 (293) T Consensus 6 ~~~i~~i~ln~p~~~Nal~~~~~~~l~~~~~~~~~d~~~~~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 85 (195) T cd06558 6 DGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFIRELQEL 85 (195) T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHHHHHCCCCHHHHHHHHHHHHHH T ss_conf 89999999858886799899999999999999974999579999749987047997588872666668899999999999 Q ss_pred HHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCC Q ss_conf 99841-47867996033233223210001110001301353455565302102456777420422553155211234666 Q gi|254780747|r 90 IQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168 (293) Q Consensus 90 i~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~ 168 (293) T Consensus 86 ~~~i~~~~kPvIaai~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~------------~~G~~p~--------------- 138 (195) T cd06558 86 LRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEV------------KLGLVPG--------------- 138 (195) T ss_pred HHHHHHCCCCEEEEECCCCCCCCCHHHHHCCEEEEECCCEEECCHH------------CCCCCCC--------------- T ss_conf 9999978999999868852777506466188899808985746621------------1433887--------------- Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC Q ss_conf 78999988777776666677899998514999889-98873498237889987798062389899999999741 Q gi|254780747|r 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293) Q Consensus 169 ~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~-~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293) T Consensus 139 -~--~~~~~-----------l~~~------~g~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a 192 (195) T cd06558 139 -G--GGTQR-----------LPRL------VGPARARELLLTGRRISAEEALELGLVDEVVPDEELLAAALELA 192 (195) T ss_pred -C--HHHHH-----------HHHH------HCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECHHHHHHHHHHHH T ss_conf -2--19999-----------9998------59999999997398577999997696206857879999999999 |
This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole. |
| >PRK05870 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.2e-08 Score=74.31 Aligned_cols=165 Identities=21% Similarity=0.249 Sum_probs=107.9 Q ss_pred CCCEEEEEEEEEEEC----C---HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHH------------HHHHHHHH Q ss_conf 787289999766623----8---69999999998618998799997588----8888899------------99999999 Q gi|254780747|r 34 NSPHVARIAIRGQIE----D---SQELIERIERISRDDSATALIVSLSS----PGGSAYA------------GEAIFRAI 90 (293) Q Consensus 34 ~~~~i~~i~i~G~I~----~---~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~------------~~~i~~ai 90 (293) T Consensus 9 ~~~~Va~itlnrP~k~Nal~~~m~~eL~~al~~~~~d~~vr~vvltG~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~ 88 (254) T PRK05870 9 VDDHVALITVNDPDRRNAVTDEMSAQLRAAVQAAEADPDVHALVVTGAGKAFCAGADLTALGAAVGGPAEDGLRRVYDGF 88 (254) T ss_pred EECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHHHHHCCCCCHHHHHHHHHHHH T ss_conf 99999999974788689989999999999999986199956999987998257278468876054642789999999999 Q ss_pred HHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCC Q ss_conf 9841-478679960332332232100011100013013534555653021024567774204225531552112346667 Q gi|254780747|r 91 QKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 (293) Q Consensus 91 ~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~ 169 (293) T Consensus 89 ~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~-------p~-----~~lGl~p~---------~g~---- 143 (254) T PRK05870 89 MAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPAALFDP-------RF-----QKLGLHPG---------GGA---- 143 (254) T ss_pred HHHHHCCCCEEEEECCCCCCCCCHHHHCCCEEEECCCCEEEC-------CC-----CCCCCCCC---------CCH---- T ss_conf 999968999999987714656716664176899859978835-------20-----27720888---------788---- Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCC--HHHHHHHHHHHCCCC Q ss_conf 899998877777666667789999851499988998873498237889987798062389--899999999741877 Q gi|254780747|r 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG--QEEVWQSLYALGVDQ 244 (293) Q Consensus 170 ~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~--~~~a~~~l~~~~~~~ 244 (293) T Consensus 144 -----~~~-----------L~r~iG~~~-----A~ellltg~~i~A~eA~~~Glv~~Vv~d~~~~a~~lA~~ia~~p 199 (254) T PRK05870 144 -----TWM-----------LQRAVGPQV-----ARAALLFGMRFDAEEAVRHGLALMVADDPVAAALELAAGPAAAP 199 (254) T ss_pred -----HHH-----------HHHHHHHHH-----HHHHHHHCCCCCHHHHHHCCCCCEECCCHHHHHHHHHHHHHCCC T ss_conf -----999-----------999970999-----99999939988699999869986677855899999999998579 |
|
| >PRK07396 naphthoate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.8e-09 Score=78.37 Aligned_cols=161 Identities=20% Similarity=0.309 Sum_probs=104.1 Q ss_pred CCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECCC-----CCCCHHH-----------HH--HHHHH Q ss_conf 87289999766623-8------69999999998618998799997588-----8888899-----------99--99999 Q gi|254780747|r 35 SPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLSS-----PGGSAYA-----------GE--AIFRA 89 (293) Q Consensus 35 ~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~S-----pGG~~~~-----------~~--~i~~a 89 (293) T Consensus 20 ~~~Va~ItLnRP~~~NAl~~~m~~eL~~al~~~~~d~~vrvvVltG~G~~~FcAG~Dl~~~~~~~~~~~~~~~~~~~~~~ 99 (273) T PRK07396 20 SDGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGDGGYVDDDGVPRLNVLDL 99 (273) T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEECCCCHHHHCCCCCCCCCCCHHHHHHHH T ss_conf 89999999678665799999999999999999850998269999789985042587645422456678420103208999 Q ss_pred HHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCC Q ss_conf 99841-47867996033233223210001110001301353455565302102456777420422553155211234666 Q gi|254780747|r 90 IQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168 (293) Q Consensus 90 i~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~ 168 (293) T Consensus 100 ~~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~A~f~~~~~------------~~G~~~~---------~----- 153 (273) T PRK07396 100 QRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGP------------KVGSFDG---------G----- 153 (273) T ss_pred HHHHHHCCCCEEEEECCEEEEHHHHHHHHCCCCEECCCCEEECCCC------------CCCCCCC---------C----- T ss_conf 9999829999999985877607699998528012237988977665------------1470677---------3----- Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC Q ss_conf 7899998877777666667789999851499988998873498237889987798062389899999999741 Q gi|254780747|r 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293) Q Consensus 169 ~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293) T Consensus 154 -~g---~~~-----------L~r~vG~~~-----A~el~ltg~~i~A~eA~~~Glv~~vv~~~~l~~~a~~~A 206 (273) T PRK07396 154 -YG---ASY-----------LARIVGQKK-----AREIWFLCRQYNAQEALDMGLVNTVVPLEDLEKETVRWC 206 (273) T ss_pred -CH---HHH-----------HHHHHHHHH-----HHHHHHHCCCCCHHHHHHCCCCCEECCHHHHHHHHHHHH T ss_conf -25---789-----------999856999-----999998289877999997798113558768999999999 |
|
| >PRK05981 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.1e-08 Score=74.62 Aligned_cols=160 Identities=18% Similarity=0.239 Sum_probs=102.7 Q ss_pred CCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCC-CCCEEEEECC----CCCCCHHHH--------------HH--- Q ss_conf 87289999766623-8------699999999986189-9879999758----888888999--------------99--- Q gi|254780747|r 35 SPHVARIAIRGQIE-D------SQELIERIERISRDD-SATALIVSLS----SPGGSAYAG--------------EA--- 85 (293) Q Consensus 35 ~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~-~ik~ivL~i~----SpGG~~~~~--------------~~--- 85 (293) T Consensus 11 ~~~ia~ItlnrP~~~Nal~~~m~~el~~al~~~~~~~~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~ 90 (266) T PRK05981 11 DGGVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDKKAEVRCLVITGAGRGFCTGANLQGRGSGNKMSQSGKDAGAALET 90 (266) T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHH T ss_conf 99999999747887899999999999999999983999879999988998722775366540122112234036899999 Q ss_pred -HHHHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCC Q ss_conf -999999841-478679960332332232100011100013013534555653021024567774204225531552112 Q gi|254780747|r 86 -IFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163 (293) Q Consensus 86 -i~~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~ 163 (293) T Consensus 91 ~~~~~~~~i~~~~kPvIaai~G~a~GgG~~lal~cD~~ias~~a~f~~~------------~~~lGl~p~---------~ 149 (266) T PRK05981 91 AYHPFLRRLRNLHCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQA------------FRRIGLVPD---------G 149 (266) T ss_pred HHHHHHHHHHHCCCCEEEEEECEEECCCHHHHHCCCCCCCCCCCEEECC------------CCCEEECCC---------C T ss_conf 9999999999589998999807663263677630640565788789756------------656601787---------6 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC Q ss_conf 3466678999988777776666677899998514999889-98873498237889987798062389899999999741 Q gi|254780747|r 164 PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293) Q Consensus 164 ~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~-~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293) T Consensus 150 g~-------~--~~l~-----------r~i------G~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~A 202 (266) T PRK05981 150 GS-------T--WLLP-----------RLV------GKARAMELSLLGEKLPAETALEWGLVNRVYDDAELMAEAMKLA 202 (266) T ss_pred CH-------H--HHHH-----------HHH------HHHHHHHHHHCCCCCCHHHHHHCCCEEEECCHHHHHHHHHHHH T ss_conf 39-------9--9999-----------986------6999999998299875999997798126708579999999999 |
|
| >PRK07260 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.1e-08 Score=74.63 Aligned_cols=161 Identities=20% Similarity=0.245 Sum_probs=104.8 Q ss_pred CCEEEEEEEEEEEC----C---HHHHHHHHHHHHCCCCCCEEEEECC----CCCCCHHHH------------HHHHHHHH Q ss_conf 87289999766623----8---6999999999861899879999758----888888999------------99999999 Q gi|254780747|r 35 SPHVARIAIRGQIE----D---SQELIERIERISRDDSATALIVSLS----SPGGSAYAG------------EAIFRAIQ 91 (293) Q Consensus 35 ~~~i~~i~i~G~I~----~---~~~l~~~l~~a~~d~~ik~ivL~i~----SpGG~~~~~------------~~i~~ai~ 91 (293) T Consensus 11 ~~~ia~ItlnrP~~~Nal~~~m~~~l~~~~~~~~~d~~vrvvil~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 90 (260) T PRK07260 11 VDDLATLTLNRPEVSNGFNIPMCQEILEALALAKEDTSVRFLLINAVGKVFSVGGDLVEMKRAVAKDDVQSLVKIAELVN 90 (260) T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHH T ss_conf 99999999737464689999999999999999976899179999789998889768888873225641678999999999 Q ss_pred ----HH-CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCC Q ss_conf ----84-1478679960332332232100011100013013534555653021024567774204225531552112346 Q gi|254780747|r 92 ----KV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 (293) Q Consensus 92 ----~~-k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p 166 (293) T Consensus 91 ~~~~~~~~~~kPvIaav~G~a~GgG~~la~~~D~~ia~~~a~f~~-------pe-----~~~Gl~p~---------~g~- 148 (260) T PRK07260 91 EISFAIKQLPKPVIMCVDGAVAGAAANIAVAADFCIASTKTKFIQ-------AF-----VGVGLAPD---------AGG- 148 (260) T ss_pred HHHHHHHHCCCCEEEEECCEECCCHHHHHHHHCCCCCCCCCEEEC-------CC-----CCCCCCCC---------CCH- T ss_conf 999999848999899976854011758988605222356877955-------76-----68612888---------559- Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC Q ss_conf 667899998877777666667789999851499988998873498237889987798062389899999999741 Q gi|254780747|r 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293) Q Consensus 167 ~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293) T Consensus 149 --------~~~-----------l~r~iG~~~-----a~~llltg~~~~a~eA~~~Glv~~vv~~e~l~~~a~~~a 199 (260) T PRK07260 149 --------LFL-----------LTRAIGLNR-----ATHLAMTGEGLTAEKALDYGIVYRVAESEKLEKTCLQLL 199 (260) T ss_pred --------HHH-----------HHHHHHHHH-----HHHHHHCCCCCCHHHHHHCCCCCEECCHHHHHHHHHHHH T ss_conf --------999-----------999975999-----999998199715999987797134558779999999999 |
|
| >PRK06563 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.6e-09 Score=76.47 Aligned_cols=161 Identities=19% Similarity=0.214 Sum_probs=105.4 Q ss_pred CCCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHHH--------HH-HHHHH-- Q ss_conf 787289999766623-8------69999999998618998799997588----888889999--------99-99999-- Q gi|254780747|r 34 NSPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLSS----PGGSAYAGE--------AI-FRAIQ-- 91 (293) Q Consensus 34 ~~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~~--------~i-~~ai~-- 91 (293) T Consensus 5 ~~g~Va~itlnrP~~~Nal~~~m~~el~~~l~~~~~d~~vr~vvl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~ 84 (255) T PRK06563 5 RRGHLLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAGGFPFPEGGIDPW 84 (255) T ss_pred EECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHH T ss_conf 88999999964887568999999999999999986399944999976898740565788874321253033566665399 Q ss_pred --H-HCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCC Q ss_conf --8-4147867996033233223210001110001301353455565302102456777420422553155211234666 Q gi|254780747|r 92 --K-VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168 (293) Q Consensus 92 --~-~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~ 168 (293) T Consensus 85 ~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ias~~a~f~~pe~------------~~Gi~p~--------------- 137 (255) T PRK06563 85 GTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAAENTRFAQLEV------------QRGILPF--------------- 137 (255) T ss_pred HHHHHCCCCCEEEEECCEEEEHHHHHHHHCCEEECCCCCEEECCHH------------CCCCCCC--------------- T ss_conf 9876407999899985887608699998426423469983536201------------0561887--------------- Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC Q ss_conf 78999988777776666677899998514999889-98873498237889987798062389899999999741 Q gi|254780747|r 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDK-TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293) Q Consensus 169 ~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~-~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293) T Consensus 138 -~g-~-~~~-----------l~r~------iG~~~a~el~ltg~~~~a~eA~~~Glv~~v~~~~~~~~~a~~~a 191 (255) T PRK06563 138 -GG-A-TLR-----------FPRA------AGWGNAMRYLLTGDEFDAQEALRLGLVQEVVPPGEQLDRAIELA 191 (255) T ss_pred -CC-H-HHH-----------HHHH------HCHHHHHHHHHCCCEECHHHHHHCCCCCEEECCCHHHHHHHHHH T ss_conf -40-9-999-----------9999------78999999875098645999997797006658118999999999 |
|
| >PRK07509 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.5e-08 Score=73.83 Aligned_cols=161 Identities=19% Similarity=0.226 Sum_probs=103.1 Q ss_pred CCEEEEEEEEEEEC----C---HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHHH------------------- Q ss_conf 87289999766623----8---69999999998618998799997588----888889999------------------- Q gi|254780747|r 35 SPHVARIAIRGQIE----D---SQELIERIERISRDDSATALIVSLSS----PGGSAYAGE------------------- 84 (293) Q Consensus 35 ~~~i~~i~i~G~I~----~---~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~~------------------- 84 (293) T Consensus 10 ~~~va~itlnrP~~~Nal~~~m~~eL~~~~~~~~~d~~vr~vvltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (262) T PRK07509 10 EDGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSPKNAVKLLFKRLPGNAN 89 (262) T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHHHHCCCCHHHHHHHHHHHHHHH T ss_conf 99999999758877799899999999999999975899569999889984234667898843881046789886044568 Q ss_pred HHHHHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCC Q ss_conf 9999999841-478679960332332232100011100013013534555653021024567774204225531552112 Q gi|254780747|r 85 AIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163 (293) Q Consensus 85 ~i~~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~ 163 (293) T Consensus 90 ~~~~~~~~~~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~p-------e-----~~~Gl~p~---------~ 148 (262) T PRK07509 90 LAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIM-------E-----AKWGLVPD---------M 148 (262) T ss_pred HHHHHHHHHHHCCCCEEEEEECEEEECCCEEECCCCEEEECCCCEEECC-------C-----CCCCCCCC---------C T ss_conf 9999999986099988999807688864021114655563698689565-------3-----04168988---------5 Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCC--HHHHHHHHHHHC Q ss_conf 346667899998877777666667789999851499988998873498237889987798062389--899999999741 Q gi|254780747|r 164 PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG--QEEVWQSLYALG 241 (293) Q Consensus 164 ~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~--~~~a~~~l~~~~ 241 (293) T Consensus 149 g~-------~--~-----------~l~~~vG~~~-----A~~l~ltg~~~~a~eA~~~Glv~~v~e~~~~~a~~~A~~i~ 203 (262) T PRK07509 149 AG-------T--V-----------SLRGLVRKDV-----ARELTYTARVFSAEEALELGLVTHVSDDPLAAAQALAREIA 203 (262) T ss_pred CH-------H--H-----------HHHHHHHHHH-----HHHHHHCCCCCCHHHHHHCCCCCEECCCHHHHHHHHHHHHH T ss_conf 59-------9--9-----------9999999999-----99999708957399998889950367107999999999998 |
|
| >PRK08260 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.7e-09 Score=76.40 Aligned_cols=160 Identities=24% Similarity=0.354 Sum_probs=103.2 Q ss_pred CCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECC----CCCCCHHH--------------HHH---- Q ss_conf 87289999766623-8------6999999999861899879999758----88888899--------------999---- Q gi|254780747|r 35 SPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLS----SPGGSAYA--------------GEA---- 85 (293) Q Consensus 35 ~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~----SpGG~~~~--------------~~~---- 85 (293) T Consensus 11 ~~~Va~ItLnRPe~~NAl~~~m~~el~~al~~~~~d~~vrvvVltG~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 90 (293) T PRK08260 11 ADGIATITLNRPDKLNAFTVTMARELIEAFDAADADDDVRAVIVTGAGRAFCAGADLSSGGNTFDLDGLVPRLEDDRADL 90 (293) T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCEECCCCCCCCCHHHHCCCCHHHHHHH T ss_conf 99999999748776789899999999999999964899069999889998665607622123233022112222355542 Q ss_pred ----HH----HHHHHH-CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEE Q ss_conf ----99----999984-147867996033233223210001110001301353455565302102456777420422553 Q gi|254780747|r 86 ----IF----RAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156 (293) Q Consensus 86 ----i~----~ai~~~-k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~ 156 (293) T Consensus 91 ~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~rias~~a~f~~~------------~~~~Gl~p~--- 155 (293) T PRK08260 91 SDPGVRDGGGRVTLRIFDCLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFV------------FGRRGIVPE--- 155 (293) T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEHHHHHHHHCCCCCCCCCCCEEECC------------CCCCCCCCC--- T ss_conf 01777767779999998489988999889851265898760360010247887366------------656156877--- Q ss_pred ECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHH Q ss_conf 1552112346667899998877777666667789999851499988-998873498237889987798062389899999 Q gi|254780747|r 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 (293) Q Consensus 157 ~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~-~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~ 235 (293) T Consensus 156 ------~g~~---------~~L~-----------rlv------G~~~A~el~ltG~~i~A~eA~~~GlV~~vv~~~~l~~ 203 (293) T PRK08260 156 ------AASS---------WFLP-----------RLV------GISTALEWVYSGRVFDAQEALDGGLVRSVHPPDDLLD 203 (293) T ss_pred ------CCHH---------HHHH-----------HHH------CHHHHHHHHHHCCCCCHHHHHHCCCEEEECCHHHHHH T ss_conf ------5399---------9999-----------997------9999999997589466999987795456758178999 Q ss_pred HHHHHC Q ss_conf 999741 Q gi|254780747|r 236 SLYALG 241 (293) Q Consensus 236 ~l~~~~ 241 (293) T Consensus 204 ~a~~~A 209 (293) T PRK08260 204 AARALA 209 (293) T ss_pred HHHHHH T ss_conf 999999 |
|
| >PRK07799 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.9e-09 Score=75.52 Aligned_cols=161 Identities=22% Similarity=0.239 Sum_probs=104.8 Q ss_pred CCEEEEEEEEEEEC----C---HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHHH---------------HHHH Q ss_conf 87289999766623----8---69999999998618998799997588----888889999---------------9999 Q gi|254780747|r 35 SPHVARIAIRGQIE----D---SQELIERIERISRDDSATALIVSLSS----PGGSAYAGE---------------AIFR 88 (293) Q Consensus 35 ~~~i~~i~i~G~I~----~---~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~~---------------~i~~ 88 (293) T Consensus 12 ~g~va~itlnrP~~~Nal~~~m~~el~~al~~~~~d~~vr~vvltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 91 (263) T PRK07799 12 RGHTLIVTMNRPEARNALSTEMLAIMVDAWDRVDNDPDIRSCILTGAGGYFCAGMDLKAATQKPPGDSFKDGSYDPSRID 91 (263) T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEECCCCHHHHHCCCCCHHHHHHHCCHHHHH T ss_conf 89999999758887899899999999999999861999279999888982535866688750685124554110278999 Q ss_pred HHHH-HCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCC Q ss_conf 9998-414786799603323322321000111000130135345556530210245677742042255315521123466 Q gi|254780747|r 89 AIQK-VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 (293) Q Consensus 89 ai~~-~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~ 167 (293) T Consensus 92 ~~~~~~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~------------~lGi~p~---------~g--- 147 (263) T PRK07799 92 ALLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEA------------KWSLYPM---------GG--- 147 (263) T ss_pred HHHHHCCCCCCEEEEECCEEEHHHHHHHHHCCEEEECCCCCCCCCCC------------EEECCCC---------CH--- T ss_conf 99986359998899985875568899988457666306654147424------------3611787---------13--- Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC Q ss_conf 67899998877777666667789999851499988998873498237889987798062389899999999741 Q gi|254780747|r 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293) Q Consensus 168 ~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293) T Consensus 148 -----~-~~~-----------l~r~iG~~~-----A~ellltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~A 199 (263) T PRK07799 148 -----S-AVR-----------LVRQIPYTV-----ACDLLLTGRHITAAEAKEIGLIGHVVPDGQALDKALEIA 199 (263) T ss_pred -----H-HHH-----------HHHHHHHHH-----HHHHHHHCCCCCHHHHHHCCCEEEECCCCHHHHHHHHHH T ss_conf -----9-999-----------999864999-----999997189997999997798048718337999999999 |
|
| >PRK08272 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.3e-08 Score=74.21 Aligned_cols=159 Identities=20% Similarity=0.245 Sum_probs=104.6 Q ss_pred CCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHH-------------------- Q ss_conf 87289999766623-8------69999999998618998799997588----88888999-------------------- Q gi|254780747|r 35 SPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLSS----PGGSAYAG-------------------- 83 (293) Q Consensus 35 ~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~-------------------- 83 (293) T Consensus 17 ~~~Va~ItLNRP~~~NAls~~m~~eL~~al~~~~~d~~vrvvVltG~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 96 (308) T PRK08272 17 TGRIARITLNRPEKGNAINADTPLELSAAVERADLDPGVHVILVSGAGRGFCAGYDLSAYAEGSSSAGGGGAYRGTVLDG 96 (308) T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCHHH T ss_conf 99999999648675689999999999999999850999439999678997106848898841334333221000000013 Q ss_pred ----------------------HHHHHHHHHH-CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCH Q ss_conf ----------------------9999999984-14786799603323322321000111000130135345556530210 Q gi|254780747|r 84 ----------------------EAIFRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPY 140 (293) Q Consensus 84 ----------------------~~i~~ai~~~-k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~ 140 (293) T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~Lal~cD~~iaa~~A~fg~p-------~ 169 (308) T PRK08272 97 KTQAVNHLPDQPWDPMIDYQMMSRFVRGFMSLLHAHKPTVAKIHGYCVAGGTDIALHCDQVIAADDAKIGYP-------P 169 (308) T ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEEHHHHHHHHCCCEEECCCCEEECC-------C T ss_conf 444311244221114678999999999999986399988999888656287999996780055488879775-------5 Q ss_pred HHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHH Q ss_conf 24567774204225531552112346667899998877777666667789999851499988998873498237889987 Q gi|254780747|r 141 VKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKK 220 (293) Q Consensus 141 ~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~ 220 (293) T Consensus 170 ~-----~~gg--------------~p---~~--~----------~---~~~~v----G~~-~A~el~ltg~~i~A~eA~~ 207 (308) T PRK08272 170 T-----RVWG--------------VP---AA--G----------M---WAHRL----GDQ-RAKRLLFTGDCITGAQAAE 207 (308) T ss_pred H-----HHCE--------------EC---CH--H----------H---HHHHH----CHH-HHHHHHHHCCCCCHHHHHH T ss_conf 6-----4372--------------46---21--2----------8---89883----699-9999987189678999998 Q ss_pred CCCCCCCCCHHHHHHHHHHHCC Q ss_conf 7980623898999999997418 Q gi|254780747|r 221 VGLIDVVGGQEEVWQSLYALGV 242 (293) Q Consensus 221 ~GLvD~ig~~~~a~~~l~~~~~ 242 (293) T Consensus 208 ~GLvn~vvp~~eL~~~a~~lA~ 229 (308) T PRK08272 208 WGLAVEAPPPEDLDERTERLVE 229 (308) T ss_pred CCCCCEECCHHHHHHHHHHHHH T ss_conf 6984355188899999999999 |
|
| >PRK07327 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=6.3e-09 Score=76.15 Aligned_cols=164 Identities=19% Similarity=0.275 Sum_probs=108.3 Q ss_pred CCCCEEEEEEEEEEEC----C---HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHH--------------HHHH Q ss_conf 7787289999766623----8---69999999998618998799997588----88888999--------------9999 Q gi|254780747|r 33 DNSPHVARIAIRGQIE----D---SQELIERIERISRDDSATALIVSLSS----PGGSAYAG--------------EAIF 87 (293) Q Consensus 33 ~~~~~i~~i~i~G~I~----~---~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~--------------~~i~ 87 (293) T Consensus 17 ~~~~GVa~itlnrP~~~Nals~~m~~~l~~a~~~~~~d~~vrvvvltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 96 (271) T PRK07327 17 RHPPGVLEIVLNRPEGLNAADARMHRELADIWRDVDRDPDVRVVVIRGEGKAFSAGGDLALVEEMAGDFEVRARVWREAR 96 (271) T ss_pred EECCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHH T ss_conf 80895899998289877898999999999999999768991699997899865567564777631578788999999999 Q ss_pred HHHHHH-CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCC Q ss_conf 999984-1478679960332332232100011100013013534555653021024567774204225531552112346 Q gi|254780747|r 88 RAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 (293) Q Consensus 88 ~ai~~~-k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p 166 (293) T Consensus 97 ~~~~~~~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~------------~~~Gl~p~------------- 151 (271) T PRK07327 97 DLVYNVINCSKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGH------------TRLGVAAG------------- 151 (271) T ss_pred HHHHHHHHCCCCEEEEEECEEECCCCHHHHHCCEEEECCCCEEECCC------------CCEEECCC------------- T ss_conf 99999997899889998033304550877636843684898587651------------30605777------------- Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCC Q ss_conf 6678999988777776666677899998514999889988734982378899877980623898999999997418 Q gi|254780747|r 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 (293) Q Consensus 167 ~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~~ 242 (293) T Consensus 152 ---~~~~--~~l-----------~~~vG~~~-----A~ellltg~~i~A~eA~~~Glv~~vv~~~~l~~~a~~lA~ 206 (271) T PRK07327 152 ---DHAA--IVW-----------PLLCGMAK-----AKYYLLLCEPVSGEEAERIGLVSLAVDDDELLPKALEVAE 206 (271) T ss_pred ---CCHH--HHH-----------HHHHHHHH-----HHHHHHHCCCCCHHHHHHCCCCCEEECHHHHHHHHHHHHH T ss_conf ---4178--889-----------98731999-----9999987798679999987992288687789999999999 |
|
| >PRK08290 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.1e-08 Score=74.53 Aligned_cols=159 Identities=17% Similarity=0.285 Sum_probs=104.4 Q ss_pred CCEEEEEEEEEEECC-------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHH--------------------- Q ss_conf 872899997666238-------69999999998618998799997588----8888899--------------------- Q gi|254780747|r 35 SPHVARIAIRGQIED-------SQELIERIERISRDDSATALIVSLSS----PGGSAYA--------------------- 82 (293) Q Consensus 35 ~~~i~~i~i~G~I~~-------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~--------------------- 82 (293) T Consensus 11 ~~~Va~ItLnRP~~~NAl~~~m~~eL~~al~~~~~D~~vrvvVLtG~G~~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~ 90 (284) T PRK08290 11 DDGIARITLNRPEARNAQNRGMLYELDAAFTRAEADDAVRVIVLAGAGKHFSAGHDLGSPGRERRPGPDHPTLWWNGATK 90 (284) T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHHHHHHCCCCCCCHHHHHCCCCH T ss_conf 99999999847264689999999999999999964979179999669996254716153553124564310233201102 Q ss_pred --HHHHH--------HHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHC Q ss_conf --99999--------9999841-478679960332332232100011100013013534555653021024567774204 Q gi|254780747|r 83 --GEAIF--------RAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVS 151 (293) Q Consensus 83 --~~~i~--------~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~ 151 (293) T Consensus 91 ~~~~~~~~~e~~~~l~~~~~i~~~~KPvIAaV~G~a~GgG~~lalacDi~iAse~A~F~~p------------~~~lGl~ 158 (284) T PRK08290 91 PGVEFRYAREWEYYLGYCRRWRDLPKPTIAQVQGACIAGGLMLAWPCDLIVASDDAFFSDP------------VVRMGIP 158 (284) T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEEHHHHHHHHCCEEEECCCCEEECC------------CCCCCCC T ss_conf 4578888898999999999985299988999868752120687853778997399899775------------3054514 Q ss_pred CEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHCCCCCCHHHHHHCCCCCCCCCH Q ss_conf 225531552112346667899998877777666667789999851499988-9988734982378899877980623898 Q gi|254780747|r 152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 (293) Q Consensus 152 ~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~-~~~~~~~g~~~~~~~A~~~GLvD~ig~~ 230 (293) T Consensus 159 ------g-----~-----------~~~---~~-p~-----~l------G~~rA~ellltg~~i~A~eA~~~GLVn~Vvp~ 201 (284) T PRK08290 159 ------G-----V-----------EYF---AH-PW-----EL------GPRKAKELLFTGDRLSADEAHRLGMVNRVVPR 201 (284) T ss_pred ------C-----H-----------HHH---HH-HH-----HH------HHHHHHHHHHHCCCCCHHHHHHCCCCCEECCH T ss_conf ------2-----3-----------577---88-88-----86------09999999982997579999976980334288 Q ss_pred HHHHHHHHHHCC Q ss_conf 999999997418 Q gi|254780747|r 231 EEVWQSLYALGV 242 (293) Q Consensus 231 ~~a~~~l~~~~~ 242 (293) T Consensus 202 ~~L~~~a~~lA~ 213 (284) T PRK08290 202 DELEAATLELAR 213 (284) T ss_pred HHHHHHHHHHHH T ss_conf 899999999999 |
|
| >PRK11423 methylmalonyl-CoA decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1e-08 Score=74.74 Aligned_cols=159 Identities=17% Similarity=0.230 Sum_probs=104.7 Q ss_pred CCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECC------CCCCCHHH-----------HHHHHHHH Q ss_conf 87289999766623-8------6999999999861899879999758------88888899-----------99999999 Q gi|254780747|r 35 SPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLS------SPGGSAYA-----------GEAIFRAI 90 (293) Q Consensus 35 ~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~------SpGG~~~~-----------~~~i~~ai 90 (293) T Consensus 11 ~d~Va~itlnrP~~~Nal~~~m~~~l~~al~~~~~-~~~r~vvl~~~~g~~~F~AG~Dl~e~~~~~~~~~~~~~~~~~~~ 89 (261) T PRK11423 11 INKIATITFNNPAKRNALSKVLIDDLMQALSDLNR-PEIRVVILRAPSGSKVWSAGHDIHELPAGGRDPLSYDDPLRQIL 89 (261) T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHC-CCCEEEEEECCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHH T ss_conf 99999999748687799899999999999999857-99879999658887542378665453225766677877999999 Q ss_pred HHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCC Q ss_conf 9841-478679960332332232100011100013013534555653021024567774204225531552112346667 Q gi|254780747|r 91 QKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 (293) Q Consensus 91 ~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~ 169 (293) T Consensus 90 ~~i~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~------------~~~Gl~~~---------------- 141 (261) T PRK11423 90 RMIQKFPKPVIAMVEGSVWGGAFDLVMSCDLIIAASTSTFAMTP------------ANLGVPYN---------------- 141 (261) T ss_pred HHHHHCCCCEEEEECCHHHHCHHHHHHHHHHHCCCCCCEEECCC------------HHCCCCCC---------------- T ss_conf 99994899899996773321408999987542101162695762------------00277768---------------- Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH-HHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC Q ss_conf 89999887777766666778999985149998899-8873498237889987798062389899999999741 Q gi|254780747|r 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293) Q Consensus 170 ~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~-~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293) T Consensus 142 ~~~-------------~~~l~~~------iG~~~A~ellltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~la 195 (261) T PRK11423 142 LSG-------------ILNFTND------AGIHIVKEMFFTASPITAERALAVGILNHLVEVEELEDFTLQMA 195 (261) T ss_pred CCH-------------HHHHHHH------HHHHHHHHHHHCCCCCCHHHHHHCCCCEEECCHHHHHHHHHHHH T ss_conf 538-------------9999999------76999999886289673999998798407548579999999999 |
|
| >PRK07468 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.8e-08 Score=72.10 Aligned_cols=156 Identities=16% Similarity=0.226 Sum_probs=105.4 Q ss_pred CCCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHH---------------HHHH Q ss_conf 787289999766623-8------69999999998618998799997588----88888999---------------9999 Q gi|254780747|r 34 NSPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLSS----PGGSAYAG---------------EAIF 87 (293) Q Consensus 34 ~~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~---------------~~i~ 87 (293) T Consensus 11 d~~GVa~itlnrP~~~NAl~~~m~~el~~a~~~~~~d~~vr~vvltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~ 90 (262) T PRK07468 11 DARGVATLTLNRPEKHNALSARMIAELTTAALRLAADAAVRVVVLTGAGKSFCAGGDLGWMREQMNADRATRIEEARKLA 90 (262) T ss_pred ECCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHHHHHHCCCCHHHHHHHHHHHH T ss_conf 18988999982888779989999999999999986589916999978998604788778776411367667778887999 Q ss_pred HHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCC Q ss_conf 9999841-478679960332332232100011100013013534555653021024567774204225531552112346 Q gi|254780747|r 88 RAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 (293) Q Consensus 88 ~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p 166 (293) T Consensus 91 ~~~~~i~~~~kPvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe------------~~~Gl~p~---------~~-- 147 (262) T PRK07468 91 LMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIGVSGARFGLTE------------TRLGLIPA---------TI-- 147 (262) T ss_pred HHHHHHHHCCCCEEEEECCEEEECCCEEECCCCEEEECCCCCCCCHH------------HHCCCCCC---------CC-- T ss_conf 99999984899899997476755554020457678973787544475------------30556778---------43-- Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHH Q ss_conf 667899998877777666667789999851499988-99887349823788998779806238989999999 Q gi|254780747|r 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSL 237 (293) Q Consensus 167 ~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~-~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l 237 (293) T Consensus 148 -------------------~~~~l~ri------G~~~A~ellltg~~i~a~eA~~~GlV~~vv~~~~l~~~~ 194 (262) T PRK07468 148 -------------------GPYVVARM------GEANARRVFMSARLFDAEEAVRLGLLARVVPAERLDAAV 194 (262) T ss_pred -------------------HHHHHHHH------HHHHHHHHHHCCCCCCHHHHHHCCCCCEEECHHHHHHHH T ss_conf -------------------88999886------299999998508825799999769871652887999999 |
|
| >PRK06127 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.6e-08 Score=73.59 Aligned_cols=160 Identities=21% Similarity=0.283 Sum_probs=104.9 Q ss_pred CCEEEEEEEEEEEC----C---HHHHHHHHHHHHCCCCCCEEEEECCC-----CCCCHHHH----------HHHHH---- Q ss_conf 87289999766623----8---69999999998618998799997588-----88888999----------99999---- Q gi|254780747|r 35 SPHVARIAIRGQIE----D---SQELIERIERISRDDSATALIVSLSS-----PGGSAYAG----------EAIFR---- 88 (293) Q Consensus 35 ~~~i~~i~i~G~I~----~---~~~l~~~l~~a~~d~~ik~ivL~i~S-----pGG~~~~~----------~~i~~---- 88 (293) T Consensus 18 ~~~V~~itlnrP~~~Nals~~~~~~l~~~l~~~~~d~~vr~vVl~g~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~ 97 (269) T PRK06127 18 TGGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAVAAYEQAVEA 97 (269) T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHH T ss_conf 89999999748875689899999999999999863899159999689977413686457775224786788999999999 Q ss_pred HHHHH-CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCC Q ss_conf 99984-14786799603323322321000111000130135345556530210245677742042255315521123466 Q gi|254780747|r 89 AIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF 167 (293) Q Consensus 89 ai~~~-k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~ 167 (293) T Consensus 98 ~~~~i~~~~kPvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~-------p-----e~~~Gl~p~-------------- 151 (269) T PRK06127 98 AQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGI-------P-----AARLGLGYG-------------- 151 (269) T ss_pred HHHHHHHCCCCEEEEECCCCCCCCHHHHCCCCEEEECCCCEEEC-------C-----HHHCCCCCC-------------- T ss_conf 99999958998999976812026413320676677569957979-------3-----164096889-------------- Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH-HHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC Q ss_conf 67899998877777666667789999851499988998-873498237889987798062389899999999741 Q gi|254780747|r 168 SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293) Q Consensus 168 ~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~-~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293) T Consensus 152 --~g~--~~~-----------l~~------~iG~~~a~~llltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~la 205 (269) T PRK06127 152 --YDG--VKN-----------LVD------LVGPSAAKDLFYTARRFDAAEALRIGLVHRVTAADDLETALADYA 205 (269) T ss_pred --CCH--HHH-----------HHH------HHCHHHHHHHHHHCCCCCHHHHHHCCCCCEECCHHHHHHHHHHHH T ss_conf --539--999-----------998------868899999987479888999998899247508769999999999 |
|
| >PRK12478 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1e-08 Score=74.84 Aligned_cols=157 Identities=18% Similarity=0.243 Sum_probs=101.4 Q ss_pred CCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHH-----------------HHHH Q ss_conf 87289999766623-8------69999999998618998799997588----8888899-----------------9999 Q gi|254780747|r 35 SPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLSS----PGGSAYA-----------------GEAI 86 (293) Q Consensus 35 ~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~-----------------~~~i 86 (293) T Consensus 12 ~~~Va~ItLNRPe~~NAl~~~m~~eL~~al~~~~~d~~vrvvVltG~G~~FcAG~Dl~~~~~~~~~~~~~~~~~~p~~~~ 91 (298) T PRK12478 12 AGPVATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMMTDGRWDPGKDF 91 (298) T ss_pred ECCEEEEEECCHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCCHHHHHHHHHHHHCCCCCCCCHHH T ss_conf 99999999718401279999999999999999820899539999789987025635422565543553103566741237 Q ss_pred ----------HHHHHHH-CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEE Q ss_conf ----------9999984-14786799603323322321000111000130135345556530210245677742042255 Q gi|254780747|r 87 ----------FRAIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155 (293) Q Consensus 87 ----------~~ai~~~-k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~ 155 (293) T Consensus 92 ~~~~~~~~~~~~~~~~i~~~~kPvIAaVnG~a~GgG~~Lal~cDi~iAs~~A~f~~p~~-------~-----lg------ 153 (298) T PRK12478 92 AMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASEDAVIGTPYS-------R-----MW------ 153 (298) T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEHHHHHHHHHCCEEEECCCCEEECCCC-------C-----CC------ T ss_conf 88988863068999999818998899987987367789998679478538878866620-------1-----27------ Q ss_pred EECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH-HHHHCCCCCCHHHHHHCCCCCCCCCHHHHH Q ss_conf 3155211234666789999887777766666778999985149998899-887349823788998779806238989999 Q gi|254780747|r 156 KSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVGGQEEVW 234 (293) Q Consensus 156 ~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~-~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~ 234 (293) T Consensus 154 --g~------~---~~~------------~---~~~rl----g--~~~a~~l~ltg~~i~A~eA~~~GLVn~VVp~eeL~ 201 (298) T PRK12478 154 --GA------Y---LTG------------M---WLYRL----S--LAKVKWHSLTGRPLTGVQAAEAELINEAVPFERLE 201 (298) T ss_pred --CC------C---HHH------------H---HHHHH----H--HHHHHHHHHCCCCCCHHHHHHCCCHHEECCHHHHH T ss_conf --65------4---147------------9---99976----8--99999999719965499999859604452888999 Q ss_pred HHHHHHC Q ss_conf 9999741 Q gi|254780747|r 235 QSLYALG 241 (293) Q Consensus 235 ~~l~~~~ 241 (293) T Consensus 202 ~~a~~~A 208 (298) T PRK12478 202 ARVAEVA 208 (298) T ss_pred HHHHHHH T ss_conf 9999999 |
|
| >PRK08140 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.6e-08 Score=73.56 Aligned_cols=160 Identities=24% Similarity=0.316 Sum_probs=102.4 Q ss_pred CCEEEEEEEEEEEC----C---HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHH------------HHHHH---- Q ss_conf 87289999766623----8---69999999998618998799997588----8888899------------99999---- Q gi|254780747|r 35 SPHVARIAIRGQIE----D---SQELIERIERISRDDSATALIVSLSS----PGGSAYA------------GEAIF---- 87 (293) Q Consensus 35 ~~~i~~i~i~G~I~----~---~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~------------~~~i~---- 87 (293) T Consensus 11 ~~~Va~ItlnrP~~~NAl~~~m~~el~~al~~~~-d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (262) T PRK08140 11 EAGVATLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAGRGFCAGQDLADRDVTPGGAMPDLGESIERFYN 89 (262) T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHH-CCCCEEEEEECCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHH T ss_conf 9999999976877668999999999999999856-789708999788986006665686610545673468999999999 Q ss_pred HHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCC Q ss_conf 9999841-478679960332332232100011100013013534555653021024567774204225531552112346 Q gi|254780747|r 88 RAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 (293) Q Consensus 88 ~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p 166 (293) T Consensus 90 ~~~~~i~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~-------p~-----~~lGl~p~---------~gg- 147 (262) T PRK08140 90 PLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQ-------AF-----VKIGLVPD---------SGG- 147 (262) T ss_pred HHHHHHHHCCCCEEEEECCEEECCHHHHHHHCCEEEECCCCEECC-------CC-----CCEEECCC---------CCH- T ss_conf 999999958998899987976410579987355433036750305-------65-----54651488---------669- Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC Q ss_conf 667899998877777666667789999851499988998873498237889987798062389899999999741 Q gi|254780747|r 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293) Q Consensus 167 ~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293) T Consensus 148 ------~--~~l-----------~r~vG~~~-----A~~llltg~~~~A~eA~~~Glv~~vv~~~~l~~~a~~lA 198 (262) T PRK08140 148 ------T--WFL-----------PRLVGMAR-----ALGLALLGEKLSAEQAEQWGLIWRVVDDAALADEARQLA 198 (262) T ss_pred ------H--HHH-----------HHHHHHHH-----HHHHHHCCCCCCHHHHHHCCCEEEECCHHHHHHHHHHHH T ss_conf ------9--999-----------99987999-----999998399877067997898578748679999999999 |
|
| >PRK07659 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.4e-08 Score=72.49 Aligned_cols=149 Identities=21% Similarity=0.299 Sum_probs=97.0 Q ss_pred CCCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHH---------HH----HHHHH Q ss_conf 787289999766623-8------69999999998618998799997588----8888899---------99----99999 Q gi|254780747|r 34 NSPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLSS----PGGSAYA---------GE----AIFRA 89 (293) Q Consensus 34 ~~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~---------~~----~i~~a 89 (293) T Consensus 12 ~~~~Va~itlnrP~~~Nal~~~m~~~l~~~l~~~~-d~~~r~vVl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~ 90 (260) T PRK07659 12 YEGHVATIMLNRPEALNALDEPMLKELLEALKEVA-ESSAHIVVLRGNGRGFSAGGDIKMMLSSNDESKFDRVMNTISEI 90 (260) T ss_pred EECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHH-CCCCEEEEEECCCCCEECCCCHHHHHCCCCHHHHHHHHHHHHHH T ss_conf 99999999974888889989999999999999975-79986999975798438886768875357867899999999999 Q ss_pred HHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCC Q ss_conf 99841-47867996033233223210001110001301353455565302102456777420422553155211234666 Q gi|254780747|r 90 IQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS 168 (293) Q Consensus 90 i~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~ 168 (293) T Consensus 91 ~~~~~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe------------~~~Gl~p~---------~g~--- 146 (260) T PRK07659 91 VVTLYTMPKLVISAIHGPAAGLGLSLALTADYVMADISAKLAMNF------------IGIGLIPD---------GGG--- 146 (260) T ss_pred HHHHHHCCCCEEEEECCEEEECHHHHHHHCCCCCCCCCCCEECCC------------CCEEECCC---------CCH--- T ss_conf 999996899899996370664134998742745556776351663------------65665778---------639--- Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCC Q ss_conf 7899998877777666667789999851499988998873498237889987798062389 Q gi|254780747|r 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG 229 (293) Q Consensus 169 ~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~ 229 (293) T Consensus 147 ----~--~~-----------l~r~iG~~~-----a~ellltg~~~~A~eA~~~GlV~~vvp 185 (260) T PRK07659 147 ----H--FF-----------LQKRVGENK-----AKQIIWEGKKLSATEALDLGLIDEVFG 185 (260) T ss_pred ----H--HH-----------HHHHHHHHH-----HHHHHHCCCCCCHHHHHHCCCCCEECC T ss_conf ----9--99-----------999983999-----999998299756999987797234439 |
|
| >PRK08252 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.9e-08 Score=73.09 Aligned_cols=161 Identities=22% Similarity=0.291 Sum_probs=105.3 Q ss_pred CCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECC----CCCCCHHHHHH------HHH---HHHHHC Q ss_conf 87289999766623-8------6999999999861899879999758----88888899999------999---999841 Q gi|254780747|r 35 SPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLS----SPGGSAYAGEA------IFR---AIQKVK 94 (293) Q Consensus 35 ~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~----SpGG~~~~~~~------i~~---ai~~~k 94 (293) T Consensus 10 ~~~ia~itlnrP~~~Nal~~~m~~el~~~l~~~~~d~~vrvvvltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (254) T PRK08252 10 RGRVLIITINRPEARNAVNLAVAQGLAAALDQLDADDDLSVGILTGAGGTFCAGMDLKAFARGERPSIPGRGFAGLTERP 89 (254) T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEECCCCHHHHHCCCCCCCHHHHHHHHHHCC T ss_conf 99999999758998899899999999999999973999179999889973555536787863897431132579999705 Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHH Q ss_conf 47867996033233223210001110001301353455565302102456777420422553155211234666789999 Q gi|254780747|r 95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174 (293) Q Consensus 95 ~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~ 174 (293) T Consensus 90 ~~kPvIaav~G~a~GgG~~la~~~D~~ias~~a~f~~pe-------~-----~~Gl~p~---------~g---------~ 139 (254) T PRK08252 90 PRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPE-------V-----KRGLVAA---------GG---------G 139 (254) T ss_pred CCCCEEEEECCEEEHHHHHHHHHCCEEEECCCCCCCCCC-------C-----EECCCCC---------CH---------H T ss_conf 799889998787761759999747899852444212760-------1-----1476888---------33---------9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHH-HHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCC Q ss_conf 887777766666778999985149998899-88734982378899877980623898999999997418 Q gi|254780747|r 175 VQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 (293) Q Consensus 175 ~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~-~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~~ 242 (293) T Consensus 140 ~~~-----------l~~~------~G~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~ 191 (254) T PRK08252 140 LLR-----------LPRR------IPYHIAMELALTGDMLPAERAHALGLVNRLTEPGQALDAALELAE 191 (254) T ss_pred HHH-----------HHHH------HHHHHHHHHHHCCCCCCHHHHHHCCCEEEECCHHHHHHHHHHHHH T ss_conf 999-----------9999------629999999967898779999988981586280389999999999 |
|
| >PRK08259 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.6e-08 Score=73.55 Aligned_cols=161 Identities=19% Similarity=0.238 Sum_probs=106.8 Q ss_pred CCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHHH------HHH----HH-HHH Q ss_conf 87289999766623-8------69999999998618998799997588----888889999------999----99-998 Q gi|254780747|r 35 SPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLSS----PGGSAYAGE------AIF----RA-IQK 92 (293) Q Consensus 35 ~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~~------~i~----~a-i~~ 92 (293) T Consensus 10 ~g~Va~ItLnrP~~~Nal~~~m~~~L~~al~~~~~d~~vrvvVltG~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (254) T PRK08259 10 NGPVTTVIINRPEARNAVDGPTAAALAAAFRAFDADDAASVAVLTGAGGTFCAGADLKAVATPRANRVHRSGPGPMGPSR 89 (254) T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHHHHCCCCCCHHHCCCCHHHHHH T ss_conf 89999999858365799899999999999999860999349999779872645668666505553200111210567999 Q ss_pred HCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCH Q ss_conf 41478679960332332232100011100013013534555653021024567774204225531552112346667899 Q gi|254780747|r 93 VKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 (293) Q Consensus 93 ~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~ 172 (293) T Consensus 90 ~~~~kPvIAaV~G~a~GgG~~lal~cD~~ia~~~A~f~~~~------------~~~Gl~~~~---------gg-----t- 142 (254) T PRK08259 90 MRLSKPVIAAISGYAVAGGLELALWCDLRVAEEDAVFGVFC------------RRWGVPLID---------GG-----T- 142 (254) T ss_pred HHCCCCEEEEECCEEEECCHHHHHHCCEEEECCCCEEECCH------------HHCCCCCCC---------CC-----C- T ss_conf 85899889997788655744664415666855896897702------------640878676---------54-----2- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCC Q ss_conf 998877777666667789999851499988-9988734982378899877980623898999999997418 Q gi|254780747|r 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 (293) Q Consensus 173 e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~-~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~~ 242 (293) T Consensus 143 -------------~-~L~r~v------G~~~A~ellltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~lA~ 193 (254) T PRK08259 143 -------------V-RLPRLI------GHSRAMDLILTGRPVDADEALAIGLANRVVPKGQARAAAEELAA 193 (254) T ss_pred -------------H-HHHHHH------CHHHHHHHHHHCCCCCHHHHHHCCCCCEEECHHHHHHHHHHHHH T ss_conf -------------0-167774------89999999985883269999986996178785789999999999 |
|
| >PRK08258 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.9e-08 Score=72.01 Aligned_cols=162 Identities=18% Similarity=0.311 Sum_probs=104.1 Q ss_pred CCEEEEEEEEEEEC----C---HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHH---------HHHH-------H Q ss_conf 87289999766623----8---69999999998618998799997588----8888899---------9999-------9 Q gi|254780747|r 35 SPHVARIAIRGQIE----D---SQELIERIERISRDDSATALIVSLSS----PGGSAYA---------GEAI-------F 87 (293) Q Consensus 35 ~~~i~~i~i~G~I~----~---~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~---------~~~i-------~ 87 (293) T Consensus 17 ~~~Ia~Itlnrp~~~NAls~~m~~el~~~~~~~~~d~~vrvvvl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 96 (270) T PRK08258 17 DGGVATITLNRPERKNPLTFDSYAELRDLFRALVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELLDFTRMTG 96 (270) T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHCHHCCCCHHHHHHHHHHHH T ss_conf 99999999747332589999999999999998855899549999679986506658787734001378688899999999 Q ss_pred HHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCC Q ss_conf 9999841-478679960332332232100011100013013534555653021024567774204225531552112346 Q gi|254780747|r 88 RAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 (293) Q Consensus 88 ~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p 166 (293) T Consensus 97 ~~~~~i~~~~kPvIaav~G~a~GgG~~la~~cD~~ia~~~a~f~~p------------~~~iGl~~-------------~ 151 (270) T PRK08258 97 DLVKAMRACPQPVIAAVDGVCAGAGAILAMASDLRLATPSAKTAFL------------FTRVGLAG-------------A 151 (270) T ss_pred HHHHHHHHCCCCEEEEECCEEEHHHHHHHHHCCCCCCCCCCEECCC------------CCEEEECC-------------C T ss_conf 9999998589998999878754676999985262414666612166------------55251157-------------7 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC Q ss_conf 667899998877777666667789999851499988998873498237889987798062389899999999741 Q gi|254780747|r 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293) Q Consensus 167 ~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293) T Consensus 152 --~~g~~--~~l-----------~r~vG~~~-----a~~llltG~~~~A~eA~~~Glv~~vv~~~~l~~~a~~~A 206 (270) T PRK08258 152 --DMGAC--ALL-----------PRIIGQGR-----ASELLYTGRSMSAEEGERWGFFNRLVEPAALLAEAQALA 206 (270) T ss_pred --CCHHH--HHH-----------HHHHHHHH-----HHHHHHHCCCCCHHHHHHCCCCCEECCHHHHHHHHHHHH T ss_conf --72178--688-----------88855999-----998787289685999998698306518789999999999 |
|
| >PRK08321 naphthoate synthase; Validated | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.3e-08 Score=72.56 Aligned_cols=160 Identities=16% Similarity=0.206 Sum_probs=101.3 Q ss_pred CCEEEEEEEEEEEC----C---HHHHHHHHHHHHCCCCCCEEEEECCC-----------CCCCHHH-------------- Q ss_conf 87289999766623----8---69999999998618998799997588-----------8888899-------------- Q gi|254780747|r 35 SPHVARIAIRGQIE----D---SQELIERIERISRDDSATALIVSLSS-----------PGGSAYA-------------- 82 (293) Q Consensus 35 ~~~i~~i~i~G~I~----~---~~~l~~~l~~a~~d~~ik~ivL~i~S-----------pGG~~~~-------------- 82 (293) T Consensus 32 ddGVa~ItLNRPek~NAl~~~m~~eL~~al~~~~~D~~vrvvVLtG~G~~~~~~gRaFcAG~Dl~~~~~~~~~~~~~~~~ 111 (302) T PRK08321 32 DQGTVRIAFDRPEVRNAFRPHTVDELYRALDHARQSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDGYQYEGGETA 111 (302) T ss_pred CCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEECCCCHHHHCCCCHHHCCCCCC T ss_conf 08589999758344589889999999999999875899549999699887666656143267645412221000134332 Q ss_pred -------HH--HHHHHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHC Q ss_conf -------99--9999999841-47867996033233223210001110001301-3534555653021024567774204 Q gi|254780747|r 83 -------GE--AIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAET-SLVGSIGVLFQYPYVKPFLDKLGVS 151 (293) Q Consensus 83 -------~~--~i~~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~-s~vGsiGv~~~~~~~~~ll~k~gi~ 151 (293) T Consensus 112 ~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~~ias~~~a~f~~~~------------~~~G~~ 179 (302) T PRK08321 112 DTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTD------------ADVGSF 179 (302) T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEHHHHHHHHHCCHHHHHHCCCEEECCC------------CCEECC T ss_conf 32015566567799999999629999999986804237499999603155511263752454------------566214 Q ss_pred CEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH-HHHHCCCCCCHHHHHHCCCCCCCCCH Q ss_conf 22553155211234666789999887777766666778999985149998899-88734982378899877980623898 Q gi|254780747|r 152 IKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVGGQ 230 (293) Q Consensus 152 ~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~-~~~~~g~~~~~~~A~~~GLvD~ig~~ 230 (293) T Consensus 180 ~~--------~~g~~----------~-----------L~r------~iG~~~A~ellltG~~i~A~eA~~~GLv~~vv~~ 224 (302) T PRK08321 180 DG--------GYGSA----------Y-----------LAR------QVGQKFAREIFFLGRTYSAEEAFQMGAVNAVVPH 224 (302) T ss_pred CC--------CCCCC----------C-----------CHH------HCCHHHHHHHHHCCCEECHHHHHHCCCCCEECCH T ss_conf 67--------55443----------4-----------025------5069999999832856449999987984144385 Q ss_pred HHHHHHHHHHC Q ss_conf 99999999741 Q gi|254780747|r 231 EEVWQSLYALG 241 (293) Q Consensus 231 ~~a~~~l~~~~ 241 (293) T Consensus 225 ~~l~~~a~~~A 235 (302) T PRK08321 225 AELETEALEWA 235 (302) T ss_pred HHHHHHHHHHH T ss_conf 78999999999 |
|
| >PRK08150 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.8e-08 Score=70.60 Aligned_cols=159 Identities=21% Similarity=0.314 Sum_probs=102.6 Q ss_pred CCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHH------------HHHHHHHH Q ss_conf 87289999766623-8------69999999998618998799997588----88888999------------99999999 Q gi|254780747|r 35 SPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLSS----PGGSAYAG------------EAIFRAIQ 91 (293) Q Consensus 35 ~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~------------~~i~~ai~ 91 (293) T Consensus 18 ~~~va~itlnrP~~~NAl~~~m~~eL~~~~~~~~--~dvrvvvl~g~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 95 (264) T PRK08150 18 DGDVATIGLNRPAKRNALNDGLIEALRDAFARLP--EEARAVVLHGEGDHFCAGLDLSELRERDATEGMRHSQRWHRVFD 95 (264) T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCC--CCCCEEEEECCCCCEECCCCHHHHHHCCCHHHHHHHHHHHHHHH T ss_conf 9999999974888689989999999999998524--48858999877986003345798751682367888889999999 Q ss_pred HHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCC Q ss_conf 841-4786799603323322321000111000130135345556530210245677742042255315521123466678 Q gi|254780747|r 92 KVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 (293) Q Consensus 92 ~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~ 170 (293) T Consensus 96 ~i~~~~~PvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe------------~~~Gl~p~----------------~ 147 (264) T PRK08150 96 KIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPE------------GQRGIFVG----------------G 147 (264) T ss_pred HHHHCCCCEEEEECCEEEEEEEEEECCCEEEECCCCCEEECHH------------CCCCCCCC----------------C T ss_conf 9982899889997268987024310230455415786771611------------13376888----------------5 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC Q ss_conf 99998877777666667789999851499988998873498237889987798062389899999999741 Q gi|254780747|r 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293) Q Consensus 171 s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293) T Consensus 148 g~~--~~-----------l~r~vG~~~-----a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~la 200 (264) T PRK08150 148 GGS--VR-----------IPRLIGVAR-----MTDMMLTGRVYSAQEGVRLGLAQYLVPAGEALDKALELA 200 (264) T ss_pred CHH--HH-----------HHHHHHHHH-----HHHHHHCCCCCCHHHHHHCCCCCEEECCCHHHHHHHHHH T ss_conf 299--99-----------999970999-----999998399516999998699738738008999999999 |
|
| >TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.5e-08 Score=69.74 Aligned_cols=149 Identities=19% Similarity=0.251 Sum_probs=100.0 Q ss_pred CCEEEEEEEEEEECC------HHHHHHHHHHHHCCCCCCEEEEECC----CCCCCHHH---------HHHHHHHHHHH-C Q ss_conf 872899997666238------6999999999861899879999758----88888899---------99999999984-1 Q gi|254780747|r 35 SPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLS----SPGGSAYA---------GEAIFRAIQKV-K 94 (293) Q Consensus 35 ~~~i~~i~i~G~I~~------~~~l~~~l~~a~~d~~ik~ivL~i~----SpGG~~~~---------~~~i~~ai~~~-k 94 (293) T Consensus 8 ~g~v~~I~LnRPk~Na~~~~m~~~l~~al~~~~~d~~vr~vvltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 87 (251) T TIGR03189 8 DGKLLRLRLARPKANIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMPDQCAAMLASLHKLVIAMLD 87 (251) T ss_pred ECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHH T ss_conf 89999999588887999999999999999999649792799996879877577664552951589999999999999996 Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHH Q ss_conf 47867996033233223210001110001301353455565302102456777420422553155211234666789999 Q gi|254780747|r 95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174 (293) Q Consensus 95 ~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~ 174 (293) T Consensus 88 ~~~PvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe------------~~~Gl~~-----------------~~--~ 136 (251) T TIGR03189 88 SPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPE------------IVLGVFA-----------------PA--A 136 (251) T ss_pred CCCCEEEEEEEEEECCHHHHHHHCCCCEECCCCCCCCCC------------CEEEECC-----------------CC--H T ss_conf 899889998227862207889866745234764334840------------0261068-----------------81--8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH-HHHCCCCCCHHHHHHCCCCCCCCCHH Q ss_conf 8877777666667789999851499988998-87349823788998779806238989 Q gi|254780747|r 175 VQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGGQE 231 (293) Q Consensus 175 ~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~-~~~~g~~~~~~~A~~~GLvD~ig~~~ 231 (293) T Consensus 137 ~-----------~~l~~~i------G~~~a~~l~ltG~~i~A~eA~~~GlVn~v~~d~ 177 (251) T TIGR03189 137 S-----------CLLPERM------GRVAAEDLLYSGRSIDGAEGARIGLANAVAEDP 177 (251) T ss_pred H-----------HHHHHHH------HHHHHHHHHHCCCCCCHHHHHHCCCCHHCCCCH T ss_conf 9-----------9999998------699999998208826699999769836005978 |
This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation. |
| >PRK07827 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.4e-07 Score=67.64 Aligned_cols=156 Identities=19% Similarity=0.258 Sum_probs=101.2 Q ss_pred CCEEEEEEEEEEEC----C---HHHHHHHHHHHHCCCCCCEEEEECC----CCCCCHHH-------------HHHHHHHH Q ss_conf 87289999766623----8---6999999999861899879999758----88888899-------------99999999 Q gi|254780747|r 35 SPHVARIAIRGQIE----D---SQELIERIERISRDDSATALIVSLS----SPGGSAYA-------------GEAIFRAI 90 (293) Q Consensus 35 ~~~i~~i~i~G~I~----~---~~~l~~~l~~a~~d~~ik~ivL~i~----SpGG~~~~-------------~~~i~~ai 90 (293) T Consensus 10 ~~~Va~ItlnrP~~~Nal~~~m~~eL~~~~~~~~~d~~vrvivltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 89 (255) T PRK07827 10 DGGVARLTLDSPHNRNALSTALVSQLHDGLTDAAADPGVRAVVLTHTGGTFCAGADLSEAGGGDPYDMAVDRAREMTALL 89 (255) T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHH T ss_conf 99999999717875799899999999999999975899559999779987447886054323781445788899999999 Q ss_pred HHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCC Q ss_conf 9841-478679960332332232100011100013013534555653021024567774204225531552112346667 Q gi|254780747|r 91 QKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 (293) Q Consensus 91 ~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~ 169 (293) T Consensus 90 ~~i~~~~kPvIaav~G~a~GgG~~la~~cD~~ia~~~a~f~~pe------------~~lGl~p~---------~g~---- 144 (255) T PRK07827 90 RAIVELPKPVIAAIDGHVRAGGLGLVGACDIAVAGPGSTFALTE------------ARIGVAPA---------IIS---- 144 (255) T ss_pred HHHHHCCCCEEEEECCEEEECCHHHHHCCCEEECCCCCEEECCC------------CCCCCCCC---------CCH---- T ss_conf 99996899889997786763404665516554148998550500------------15625887---------539---- Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCC-HHHHHHHH Q ss_conf 899998877777666667789999851499988998873498237889987798062389-89999999 Q gi|254780747|r 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGG-QEEVWQSL 237 (293) Q Consensus 170 ~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~-~~~a~~~l 237 (293) T Consensus 145 -----------------~~~l~rlg~~~-----a~~l~ltg~~~~a~eA~~~Glv~~~~e~l~~~~~~~ 191 (255) T PRK07827 145 -----------------LTLLPKLSPRA-----AARYYLTGEKFGAAEAARIGLVTVAADDVDAAVAAL 191 (255) T ss_pred -----------------HHHHHHHHHHH-----HHHHHHCCCCCCHHHHHHCCCEEEECCCHHHHHHHH T ss_conf -----------------99999999999-----998861088278999998799245665599999999 |
|
| >COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.1e-07 Score=68.30 Aligned_cols=159 Identities=23% Similarity=0.255 Sum_probs=104.2 Q ss_pred CEEEEEEEEEEECC-------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHHH-------------HHHHHHH Q ss_conf 72899997666238-------69999999998618998799997588----888889999-------------9999999 Q gi|254780747|r 36 PHVARIAIRGQIED-------SQELIERIERISRDDSATALIVSLSS----PGGSAYAGE-------------AIFRAIQ 91 (293) Q Consensus 36 ~~i~~i~i~G~I~~-------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~~-------------~i~~ai~ 91 (293) T Consensus 13 ~~v~~itl~rp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvltG~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 92 (257) T COG1024 13 DGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLSPEDGNAAENLMQPGQDLLR 92 (257) T ss_pred CCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHHHHCCCCHHHHHHHHHHHHHHHH T ss_conf 88899997067623588999999999999999629981699998189716717498877422310468888878899999 Q ss_pred HHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCC Q ss_conf 841-4786799603323322321000111000130135345556530210245677742042255315521123466678 Q gi|254780747|r 92 KVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEV 170 (293) Q Consensus 92 ~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~ 170 (293) T Consensus 93 ~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~------------iGl~pg----------------~ 144 (257) T COG1024 93 ALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVN------------LGLLPG----------------D 144 (257) T ss_pred HHHHCCCCEEEEECCHHHHHHHHHHHHCCEEEECCCCEEECCCCC------------CCCCCC----------------C T ss_conf 998589999998365014678899870887983477788554134------------265878----------------4 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH-HHHCCCCCCHHHHHHCCCCCCCCCH-HHHHHHHHHHC Q ss_conf 99998877777666667789999851499988998-8734982378899877980623898-99999999741 Q gi|254780747|r 171 NPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDVVGGQ-EEVWQSLYALG 241 (293) Q Consensus 171 s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~-~~~~g~~~~~~~A~~~GLvD~ig~~-~~a~~~l~~~~ 241 (293) T Consensus 145 --g~~~~l~-----------------r~~G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a 198 (257) T COG1024 145 --GGTQRLP-----------------RLLGRGRAKELLLTGEPISAAEALELGLVDEVVPDAEELLERALELA 198 (257) T ss_pred --CHHHHHH-----------------HHCCHHHHHHHHHCCCCCCHHHHHHCCCCCEECCCHHHHHHHHHHHH T ss_conf --5889999-----------------97396889999982898889999978991466587688999999999 |
|
| >KOG1680 consensus | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.1e-08 Score=71.77 Aligned_cols=160 Identities=23% Similarity=0.331 Sum_probs=105.8 Q ss_pred CCCEEEEEEEEEEEC-------CHHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHHHH-------------HHHH Q ss_conf 787289999766623-------869999999998618998799997588----8888899999-------------9999 Q gi|254780747|r 34 NSPHVARIAIRGQIE-------DSQELIERIERISRDDSATALIVSLSS----PGGSAYAGEA-------------IFRA 89 (293) Q Consensus 34 ~~~~i~~i~i~G~I~-------~~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~~~-------------i~~a 89 (293) T Consensus 43 ~d~~I~lItlNRP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~~~~~~~~~~~~ 122 (290) T KOG1680 43 EDNGIALITLNRPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDVSDGIFLRVWDL 122 (290) T ss_pred CCCCEEEEEECCHHHHCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCCHHHH T ss_conf 47876899837867752115899999999999740467654799976887523643789875211234454430012566 Q ss_pred HHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCC Q ss_conf 99841478679960332332232100011100013013534555653021024567774204225531552112346667 Q gi|254780747|r 90 IQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE 169 (293) Q Consensus 90 i~~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~ 169 (293) T Consensus 123 ~~--~~~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~------------~Gi~p----------------- 171 (290) T KOG1680 123 VS--RLKKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIR------------MGIIP----------------- 171 (290) T ss_pred HH--HCCCCEEEEEECEEECCCHHHHHHCCEEECCCCCEECCCCCC------------CCCCC----------------- T ss_conf 65--246551375503664361222353134752677752464431------------27764----------------- Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC Q ss_conf 899998877777666667789999851499988998873498237889987798062389899999999741 Q gi|254780747|r 170 VNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293) Q Consensus 170 ~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293) T Consensus 172 -~~GGT~rl~-----------r~vG~s~-----Ale~~ltg~~~~AqeA~~~GlVn~Vvp~~~~l~eAv~l~ 226 (290) T KOG1680 172 -SWGGTQRLP-----------RIVGKSR-----ALEMILTGRRLGAQEAKKIGLVNKVVPSGDALGEAVKLA 226 (290) T ss_pred -CCCCHHHHH-----------HHHCHHH-----HHHHHHHCCCCCHHHHHHCCCEEEEECCHHHHHHHHHHH T ss_conf -777210688-----------7857678-----999997168364778875785247524306799999999 |
|
| >pfam00378 ECH Enoyl-CoA hydratase/isomerase family | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.1e-07 Score=68.21 Aligned_cols=131 Identities=27% Similarity=0.344 Sum_probs=87.1 Q ss_pred HHHHHHHHHHHCCCCCCEEEEECC----CCCCCHHHH------------HHHHHHHHHHC-CCCCEEEEECCCCCCCCCC Q ss_conf 999999999861899879999758----888888999------------99999999841-4786799603323322321 Q gi|254780747|r 51 QELIERIERISRDDSATALIVSLS----SPGGSAYAG------------EAIFRAIQKVK-NRKPVITEVHEMAASAGYL 113 (293) Q Consensus 51 ~~l~~~l~~a~~d~~ik~ivL~i~----SpGG~~~~~------------~~i~~ai~~~k-~~kpvva~~~~~~~S~~Y~ 113 (293) T Consensus 20 ~~l~~~~~~~~~d~~i~vvil~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~PvIa~v~G~a~GgG~~ 99 (169) T pfam00378 20 TELIQALEKLEQDPSVRAVVLTGAPGAFSAGADIKEMAAKRPAQQAQFSLEALDLWSRLEDLPKPVIAAVNGYALGGGLE 99 (169) T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEECCCHH T ss_conf 99999999998689945999978996422588889986168377889999999999999968998999966836504608 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 00011100013013534555653021024567774204225531552112346667899998877777666667789999 Q gi|254780747|r 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193 (293) Q Consensus 114 iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~V 193 (293) T Consensus 100 la~~~D~~va~~~a~f~~pe~------------~~Gl~p~----------------~~--~~~~l-----------~~-- 136 (169) T pfam00378 100 LALACDYRIAADNAKFGLPET------------KLGIIPG----------------AG--GTQRL-----------PR-- 136 (169) T ss_pred HHHHCCCHHHCCCCEEECCCC------------CCCCCCC----------------CC--HHHHH-----------HH-- T ss_conf 887376065357984747503------------3775864----------------46--99999-----------99-- Q ss_pred HHCCCCCHHHH-HHHHCCCCCCHHHHHHCCCCCCCC Q ss_conf 85149998899-887349823788998779806238 Q gi|254780747|r 194 SESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVG 228 (293) Q Consensus 194 a~~R~~~~~~~-~~~~~g~~~~~~~A~~~GLvD~ig 228 (293) T Consensus 137 ----~~g~~~a~~l~ltg~~~~a~eA~~~Glv~~vV 168 (169) T pfam00378 137 ----IIGHSAALEMLLTGRRIRAQEALKMGLVDKVV 168 (169) T ss_pred ----HHCHHHHHHHHHCCCCCCHHHHHHCCCEEECC T ss_conf ----97999999999819946799999829653215 |
This family contains a diverse set of enzymes including: Enoyl-CoA hydratase. Napthoate synthase. Carnitate racemase. 3-hydoxybutyryl-CoA dehydratase. Dodecanoyl-CoA delta-isomerase. |
| >PRK06213 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.5e-07 Score=64.48 Aligned_cols=160 Identities=16% Similarity=0.187 Sum_probs=95.6 Q ss_pred CCEEEEEEEEEEECC------HHHHHHHHHHHHCCCCCCEEEEECC----CCCCCHHHH-----------HHHHHHHHHH Q ss_conf 872899997666238------6999999999861899879999758----888888999-----------9999999984 Q gi|254780747|r 35 SPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLS----SPGGSAYAG-----------EAIFRAIQKV 93 (293) Q Consensus 35 ~~~i~~i~i~G~I~~------~~~l~~~l~~a~~d~~ik~ivL~i~----SpGG~~~~~-----------~~i~~ai~~~ 93 (293) T Consensus 10 ~~~Va~itlnr~~~Nal~~~~~~~l~~al~~~~~d~--~vvvltg~g~~FsAG~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 87 (229) T PRK06213 10 EDGVATITLDDGKVNAISPDMIDALNAALDQAEDDR--AAVVLTGQPGIFSGGFDLKVMTSGAQAAIALLTAGSTLARRL 87 (229) T ss_pred ECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEEECCCCCEECCCCHHHHHCCCHHHHHHHHHHHHHHHHH T ss_conf 999999998999878999999999999999753598--299998899862178767766017276899999899999999 Q ss_pred C-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCC Q ss_conf 1-478679960332332232100011100013013-53455565302102456777420422553155211234666789 Q gi|254780747|r 94 K-NRKPVITEVHEMAASAGYLISCASNIIVAAETS-LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171 (293) Q Consensus 94 k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s-~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s 171 (293) T Consensus 88 ~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~~~~~~~-------~e-----~~iGl~~-------------~---~- 138 (229) T PRK06213 88 LSHPKPVIVACTGHAIAKGAFLLLSGDYRIGVHGPFKIGL-------NE-----VAIGMTM-------------P---H- 138 (229) T ss_pred HHCCCCEEEEECCCCCHHHHHHHHHCCEEEEECCCCCCCC-------CC-----CEECCCC-------------C---H- T ss_conf 9579999999878651199899871888999668612168-------62-----3268888-------------6---5- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCC Q ss_conf 99988777776666677899998514999889988734982378899877980623898999999997418 Q gi|254780747|r 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 (293) Q Consensus 172 ~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~~ 242 (293) T Consensus 139 -~g~~~~-----------~~~~~~~~-----~~~~~ltg~~~~a~eA~~~GlV~~vv~~~~l~~~a~~~A~ 192 (229) T PRK06213 139 -AGIELA-----------RDRLTPSA-----FQRSVINAEMFDPETAVAAGFLDEVVPPEQLLTRAQAAAR 192 (229) T ss_pred -HHHHHH-----------HHHHHHHH-----HHHHHHCCCCCCHHHHHHCCCCCEEECHHHHHHHHHHHHH T ss_conf -599999-----------99889999-----9999984997509999987986167688899999999999 |
|
| >PRK06072 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.1e-06 Score=62.15 Aligned_cols=158 Identities=17% Similarity=0.246 Sum_probs=101.1 Q ss_pred EEEEEEEEEEC----C---HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHH-----HHH----HHHHHHHHC-CC Q ss_conf 89999766623----8---69999999998618998799997588----8888899-----999----999999841-47 Q gi|254780747|r 38 VARIAIRGQIE----D---SQELIERIERISRDDSATALIVSLSS----PGGSAYA-----GEA----IFRAIQKVK-NR 96 (293) Q Consensus 38 i~~i~i~G~I~----~---~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~-----~~~----i~~ai~~~k-~~ 96 (293) T Consensus 2 Va~itlnRP~~~Nal~~~m~~eL~~a~~~~~~d~~vr~vVl~g~G~~FcAG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (240) T PRK06072 2 VAVITIDRPDKLNALNLETRNELISALREINADPKIRVVILTGEGRAFSVGADLSEISEDITEDLRDSFHPIIKEIRFSN 81 (240) T ss_pred EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 79999748988899899999999999999975899069999879986551588788745446889999999999998389 Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHH Q ss_conf 86799603323322321000111000130135345556530210245677742042255315521123466678999988 Q gi|254780747|r 97 KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQ 176 (293) Q Consensus 97 kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~ 176 (293) T Consensus 82 kp~Iaav~G~a~GgG~~la~~cD~rias~~a~f~~~------------~~~~Gl~p~---------~g-----~------ 129 (240) T PRK06072 82 KIYISAVNGVVAGAGISIALSTDFRFASKDVRFVTA------------FQRIGLAPD---------TG-----L------ 129 (240) T ss_pred CCEEEEECCEEEHHHHHHHHHCCEEEECCCCCEECC------------CCCCCCCCC---------CC-----H------ T ss_conf 998999888755687999986276553023210067------------556050899---------76-----9------ Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCH-HHHHHHHHHHCC Q ss_conf 777776666677899998514999889988734982378899877980623898-999999997418 Q gi|254780747|r 177 MMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQ-EEVWQSLYALGV 242 (293) Q Consensus 177 ~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~-~~a~~~l~~~~~ 242 (293) T Consensus 130 ----------~~~l~~l~g-----~~a~~~ll~g~~~~a~eA~~~Glv~~~~~~l~~a~~la~~ia~ 181 (240) T PRK06072 130 ----------AYILLKLGG-----VRFYDHLILGGEFTAEDAEEWGILKISEDPLSDALKMAEEISS 181 (240) T ss_pred ----------HHHHHHHHH-----HHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHH T ss_conf ----------999999999-----9999988618973799999879941166658999999999983 |
|
| >PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.2e-07 Score=64.08 Aligned_cols=152 Identities=14% Similarity=0.152 Sum_probs=97.7 Q ss_pred CCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHHH----------HHHHHHHHHH Q ss_conf 87289999766623-8------69999999998618998799997588----88888999----------9999999984 Q gi|254780747|r 35 SPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLSS----PGGSAYAG----------EAIFRAIQKV 93 (293) Q Consensus 35 ~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~~----------~~i~~ai~~~ 93 (293) T Consensus 11 ~~~Va~itLnRP~~~NAl~~~m~~el~~al~~~~~d--~~vvVltG~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~l 88 (251) T PRK07112 11 DGDICFLQLHRPDAQNAINNRLIAECMDVLDRCEHA--ATIVVLEGLPDVFCFGADFSDIAEKPDALIDSEPLYGLWHRL 88 (251) T ss_pred ECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCC--CCEEEEECCCCCEECCCCHHHHHHCCCCCCCHHHHHHHHHHH T ss_conf 999999997388877887999999999999851669--808999889987056777276651632212467999999999 Q ss_pred C-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCH Q ss_conf 1-478679960332332232100011100013013534555653021024567774204225531552112346667899 Q gi|254780747|r 94 K-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNP 172 (293) Q Consensus 94 k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~ 172 (293) T Consensus 89 ~~~p~pvIAaV~G~a~GgG~~lal~cD~~ia~~~A~f~~pe------------~~~Gl~p~---------~~-------- 139 (251) T PRK07112 89 ATGPYITIAHVQGKVNAGGIGFVAASDIAIADENVPFSLSE------------LLFGLIPA---------CV-------- 139 (251) T ss_pred HHCCCCEEEEECCEEEEHHHHHHHHCCEEEECCCCEEECCC------------CCCCCCCC---------CH-------- T ss_conf 84998299996165666156776521502457998898741------------06373777---------37-------- Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHH Q ss_conf 998877777666667789999851499988998873498237889987798062389899999 Q gi|254780747|r 173 KAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 (293) Q Consensus 173 e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~ 235 (293) T Consensus 140 -------------~~~L~r~iG~~~-----A~~l~ltg~~i~A~eA~~~GLv~~vv~~~~~~~ 184 (251) T PRK07112 140 -------------LPFLARRIGTQK-----AHYMTLMTQPVTAQQAFSWGLVDAIDANSDTLL 184 (251) T ss_pred -------------HHHHHHHHHHHH-----HHHHHHHCCCCCHHHHHHCCCCCEECCCHHHHH T ss_conf -------------999999997999-----999999399624999998799788619778999 |
|
| >TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP; InterPro: IPR001907 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.6e-06 Score=61.07 Aligned_cols=154 Identities=23% Similarity=0.297 Sum_probs=99.1 Q ss_pred EEEEEEECCH--HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCC Q ss_conf 9976662386--99999999986189987999975888888899999999999841478679960332332232100011 Q gi|254780747|r 41 IAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCAS 118 (293) Q Consensus 41 i~i~G~I~~~--~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~a 118 (293) T Consensus 30 ~~l~~~~~d~~a~~~vaqllfl~~e~~~k~i~ly~nsPGG~~~aG~~iydtm~~i~P--~v~t~C~G~aasmGafll~~G 107 (192) T TIGR00493 30 IFLSGEVEDEVANLIVAQLLFLEAEDPEKDIYLYINSPGGSITAGLAIYDTMQFIKP--DVSTICIGQAASMGAFLLAAG 107 (192) T ss_pred HHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEHHHHHHHHHHHHHCC--CHHEEEHHHHHHHHHHHHHCC T ss_conf 332020013578899999887513687551588983688500144688877875163--220000101666778987437 Q ss_pred C--CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 1--00013013534555653021024567774204225531552112346667--8999988777776666677899998 Q gi|254780747|r 119 N--IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSE--VNPKAVQMMQDVVDSSYHWFVRLVS 194 (293) Q Consensus 119 d--~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~--~s~e~~~~~~~~l~~~~~~f~~~Va 194 (293) T Consensus 108 ~~Gkr~~l~~~~~m------i--------------------------hqPlGG~~Gqa~~i~i~a~~il~~~~~~~~~l~ 155 (192) T TIGR00493 108 AKGKRAALPNSRIM------I--------------------------HQPLGGAQGQASDIEIQAKEILKLKKLLNEILA 155 (192) T ss_pred CCCCHHCCCCCEEE------E--------------------------ECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 65310002434057------8--------------------------647788665401345668999999999999998 Q ss_pred HCCCCCHHHHHHHHC-CCCCCHHHHHHCCCCCCCC Q ss_conf 514999889988734-9823788998779806238 Q gi|254780747|r 195 ESRNIPYDKTLVLSD-GRIWTGAEAKKVGLIDVVG 228 (293) Q Consensus 195 ~~R~~~~~~~~~~~~-g~~~~~~~A~~~GLvD~ig 228 (293) T Consensus 156 ~~~G~~~e~~~~d~~rd~f~~a~~a~~yGl~d~~l 190 (192) T TIGR00493 156 EHTGQSLEKIEKDTERDFFMSAEEAKEYGLIDKVL 190 (192) T ss_pred HHHCCHHHHHHHHHHHHHHHCHHHHHHCCHHHHHH T ss_conf 74073167887654222210225565303078884 |
They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin . It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP , although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0008462 endopeptidase Clp activity, 0006508 proteolysis. |
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ; InterPro: IPR012802 Members of this family represent the alpha subunit of the multifunctional enzyme complex of the fatty acid degradation cycle, which plays a minor role in aerobic beta-oxidation of fatty acids | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00041 Score=45.83 Aligned_cols=164 Identities=18% Similarity=0.292 Sum_probs=103.9 Q ss_pred CCCCEEEEEEEE--EEECCH------HHHHHHHHHHHCCCCCCEEEEECCCC-----CCCHH---------HHHHHHH-- Q ss_conf 778728999976--662386------99999999986189987999975888-----88889---------9999999-- Q gi|254780747|r 33 DNSPHVARIAIR--GQIEDS------QELIERIERISRDDSATALIVSLSSP-----GGSAY---------AGEAIFR-- 88 (293) Q Consensus 33 ~~~~~i~~i~i~--G~I~~~------~~l~~~l~~a~~d~~ik~ivL~i~Sp-----GG~~~---------~~~~i~~-- 88 (293) T Consensus 6 ~r~d~ia~ltiDVpge~mNTLkaeF~~qv~~il~q~~~~~~l~GlV~~SgKpD~FiAGADI~Ml~aC~TA~~A~~La~~G 85 (732) T TIGR02440 6 VREDGIAILTIDVPGEKMNTLKAEFADQVSEILKQLKEKKELRGLVLVSGKPDSFIAGADISMLAACQTADDAKALAQKG 85 (732) T ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHH T ss_conf 46786279997127885202255446899999999972888735899852788712254188886137767999999865 Q ss_pred --HHHHHCC-CCCEEEEECCCCCCCCCCCCCCCCCCCCCHH--HHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCC Q ss_conf --9998414-7867996033233223210001110001301--3534555653021024567774204225531552112 Q gi|254780747|r 89 --AIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAET--SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163 (293) Q Consensus 89 --ai~~~k~-~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~--s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~ 163 (293) T Consensus 86 q~~~~~l~ALp~~VvAAIHGaCLGGGLELALACH~RvCsdD~KT~LGlPEVQ------------LGLLP---------G- 143 (732) T TIGR02440 86 QELFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQ------------LGLLP---------G- 143 (732) T ss_pred HHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHCCCCEECCCCCEEECCCCHH------------HCCCC---------C- T ss_conf 8999864117840788504886550489999708760258987230686040------------12458---------7- Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCC Q ss_conf 3466678999988777776666677899998514999889988734982378899877980623898999999997418 Q gi|254780747|r 164 PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGV 242 (293) Q Consensus 164 ~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~~ 242 (293) T Consensus 144 ----sGGT----QRLPRLv---------------Gv~-~ALdMiLTGKQlRakqAlklGLV~dvVP~~ILL~~A~~~A~ 198 (732) T TIGR02440 144 ----SGGT----QRLPRLV---------------GVS-TALDMILTGKQLRAKQALKLGLVDDVVPRSILLDVAVELAL 198 (732) T ss_pred ----CCCC----CCCHHHH---------------HHH-HHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHH T ss_conf ----7763----3002587---------------798-89887630321015778525872324641579999999985 |
The FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (4.2.1.17 from EC), 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC), and 3-hydroxybutyryl-CoA epimerase (5.1.2.3 from EC). A representative is the Escherichia coli FadJ protein (also named YfcX) (P77399 from SWISSPROT). This entry excludes FadB of IPR012799 from INTERPRO.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0004300 enoyl-CoA hydratase activity, 0008692 3-hydroxybutyryl-CoA epimerase activity, 0051287 NAD binding, 0006635 fatty acid beta-oxidation, 0016507 fatty acid beta-oxidation multienzyme complex. |
| >KOG1681 consensus | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00025 Score=47.24 Aligned_cols=165 Identities=22% Similarity=0.327 Sum_probs=106.1 Q ss_pred CCCCCEEEEEEEEEEEC-------CHHHHHHHHHHHHCCCCCCEEEEECC-------------------CCCCC-HH-HH Q ss_conf 67787289999766623-------86999999999861899879999758-------------------88888-89-99 Q gi|254780747|r 32 EDNSPHVARIAIRGQIE-------DSQELIERIERISRDDSATALIVSLS-------------------SPGGS-AY-AG 83 (293) Q Consensus 32 ~~~~~~i~~i~i~G~I~-------~~~~l~~~l~~a~~d~~ik~ivL~i~-------------------SpGG~-~~-~~ 83 (293) T Consensus 26 k~~~~~V~hv~lnRPsk~Nal~~~~w~E~~~cf~~l~~dpdcr~iilsg~GKhFcaGIDl~~~~~~~~~~~~~dd~aR~g 105 (292) T KOG1681 26 KSAQPFVYHVQLNRPSKLNALNKVFWREFKECFDSLDRDPDCRAIILSGAGKHFCAGIDLNDMASDRILQPEGDDVARKG 105 (292) T ss_pred CCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEECCCCCCHHHHHHCCCCCCCHHHHHH T ss_conf 37887479998468310004669999999999875346988429999568751213657302455520264330376653 Q ss_pred HHHHHHHHHH--------CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEE Q ss_conf 9999999984--------14786799603323322321000111000130135345556530210245677742042255 Q gi|254780747|r 84 EAIFRAIQKV--------KNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSV 155 (293) Q Consensus 84 ~~i~~ai~~~--------k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~ 155 (293) T Consensus 106 ~~lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffs---------------------vkEV 164 (292) T KOG1681 106 RSLRRIIKRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFS---------------------VKEV 164 (292) T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCEEECCEEEECCCCEEE---------------------EEEE T ss_conf 9999999999999899983890189998753205552101202445641230146---------------------5654 Q ss_pred EECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH-HCCCCCCHHHHHHCCCCCCC-CCHHHH Q ss_conf 3155211234666789999887777766666778999985149998899887-34982378899877980623-898999 Q gi|254780747|r 156 KSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVL-SDGRIWTGAEAKKVGLIDVV-GGQEEV 233 (293) Q Consensus 156 ~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~-~~g~~~~~~~A~~~GLvD~i-g~~~~a 233 (293) T Consensus 165 DvglaADvGT---------L~RlpkvVGn----------------~s~~~elafTar~f~a~EAl~~GLvSrvf~dk~~l 219 (292) T KOG1681 165 DVGLAADVGT---------LNRLPKVVGN----------------QSLARELAFTARKFSADEALDSGLVSRVFPDKEEL 219 (292) T ss_pred EEEHHHCHHH---------HHHHHHHHCC----------------HHHHHHHHHHHHHCCHHHHHHCCCCHHHCCCHHHH T ss_conf 2201113146---------7665687553----------------67888887665223403566437410106978998 Q ss_pred HHHHHHHCC Q ss_conf 999997418 Q gi|254780747|r 234 WQSLYALGV 242 (293) Q Consensus 234 ~~~l~~~~~ 242 (293) T Consensus 220 l~~~l~mA~ 228 (292) T KOG1681 220 LNGALPMAE 228 (292) T ss_pred HHHHHHHHH T ss_conf 750477888 |
|
| >PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00043 Score=45.71 Aligned_cols=122 Identities=15% Similarity=0.273 Sum_probs=88.0 Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCCH-------HHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCCCCCCCCCCCC Q ss_conf 999999999861899879999758888888-------999999999998414-786799603323322321000111000 Q gi|254780747|r 51 QELIERIERISRDDSATALIVSLSSPGGSA-------YAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIV 122 (293) Q Consensus 51 ~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~-------~~~~~i~~ai~~~k~-~kpvva~~~~~~~S~~Y~iAs~ad~I~ 122 (293) T Consensus 85 RKA~Rlm~lAekf~-~-PvitfIDTpGA~pg~~AEerGqaeaIA~~l~~m~~l~VPiIsvIiGEGgSGGALAl~~~D~Vl 162 (256) T PRK12319 85 RKALRLMKQAEKFG-R-PVVTFINTAGAYPGVGAEERGQGEAIARNLMEMSDLKVPIIAIIIGEGGSGGALALAVADQVW 162 (256) T ss_pred HHHHHHHHHHHHHC-C-CEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEECCCEEE T ss_conf 99999999999809-9-879996079867885321038999999999999769998799997687663210111257045 Q ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH Q ss_conf 13013534555653021024567774204225531552112346667899998877777666667789999851499988 Q gi|254780747|r 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 (293) Q Consensus 123 a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~ 202 (293) T Consensus 163 MlE~a~--------------------------------------YSVISPEGcASI------Lwr------------d~~ 186 (256) T PRK12319 163 MLENTM--------------------------------------YAVLSPEGFASI------LWK------------DGS 186 (256) T ss_pred EECCEE--------------------------------------EEECCHHHHHHH------HHC------------CHH T ss_conf 445718--------------------------------------996588887888------616------------734 Q ss_pred HHHHHHCCCCCCHHHHHHCCCCCCCCCH Q ss_conf 9988734982378899877980623898 Q gi|254780747|r 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 (293) Q Consensus 203 ~~~~~~~g~~~~~~~A~~~GLvD~ig~~ 230 (293) T Consensus 187 ka~eAAealklTa~dL~~lgiID~II~E 214 (256) T PRK12319 187 RATEAAELMKITAGELYQMGIVDKVIPE 214 (256) T ss_pred HHHHHHHHCCCCHHHHHHCCCCCEEEEC T ss_conf 4599999834799999868997188508 |
|
| >PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00081 Score=43.99 Aligned_cols=122 Identities=20% Similarity=0.310 Sum_probs=88.1 Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCCH-------HHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCCCCCCCCCCCC Q ss_conf 999999999861899879999758888888-------999999999998414-786799603323322321000111000 Q gi|254780747|r 51 QELIERIERISRDDSATALIVSLSSPGGSA-------YAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIV 122 (293) Q Consensus 51 ~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~-------~~~~~i~~ai~~~k~-~kpvva~~~~~~~S~~Y~iAs~ad~I~ 122 (293) T Consensus 137 RKAlRlm~lAekf~--~Pvit~IDTpGAypG~~AEerGqaeAIA~~l~~m~~l~vPiisviiGEGgSGGALal~~~d~v~ 214 (318) T PRK05724 137 RKALRLMEMAERFG--LPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIICTVIGEGGSGGALAIGVGDRVL 214 (318) T ss_pred HHHHHHHHHHHHCC--CCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHCCCEEE T ss_conf 99999999999709--9779993489767898763138899999999999689998799997788744477772468588 Q ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH Q ss_conf 13013534555653021024567774204225531552112346667899998877777666667789999851499988 Q gi|254780747|r 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 (293) Q Consensus 123 a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~ 202 (293) T Consensus 215 Mle~a~--------------------------------------YSViSPEgcAsI------Lwk------------d~~ 238 (318) T PRK05724 215 MLEHST--------------------------------------YSVISPEGCASI------LWK------------DAA 238 (318) T ss_pred EECCEE--------------------------------------EEECCHHHHHHH------HHC------------CHH T ss_conf 844718--------------------------------------885487776687------625------------886 Q ss_pred HHHHHHCCCCCCHHHHHHCCCCCCCCCH Q ss_conf 9988734982378899877980623898 Q gi|254780747|r 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 (293) Q Consensus 203 ~~~~~~~g~~~~~~~A~~~GLvD~ig~~ 230 (293) T Consensus 239 ~a~eAAe~lkiTa~dL~~lgiiD~II~E 266 (318) T PRK05724 239 KAPEAAEAMKITAQDLKELGIIDEIIPE 266 (318) T ss_pred HHHHHHHHCCCCHHHHHHCCCCCEECCC T ss_conf 7599999758999999867997165469 |
|
| >CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0012 Score=42.96 Aligned_cols=122 Identities=19% Similarity=0.276 Sum_probs=85.9 Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCCH-------HHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCCCCCCCCCCCC Q ss_conf 999999999861899879999758888888-------999999999998414-786799603323322321000111000 Q gi|254780747|r 51 QELIERIERISRDDSATALIVSLSSPGGSA-------YAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIV 122 (293) Q Consensus 51 ~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~-------~~~~~i~~ai~~~k~-~kpvva~~~~~~~S~~Y~iAs~ad~I~ 122 (293) T Consensus 141 RKAlRlm~lAekf-~-~Pvit~IDTpGAypG~~AEerGQaeAIA~nL~~m~~L~vPiisvViGEGGSGGALAl~vaDrvl 218 (322) T CHL00198 141 RKALRLMEHANRF-G-LPILTFIDTPGAWAGLKAEKLGQGEAIAVNLREMFSFEVPIICTIIGEGGSGGALGIGIGDSIL 218 (322) T ss_pred HHHHHHHHHHHHC-C-CCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCEEE T ss_conf 9999999999970-9-9779983289867887633158799999999999679998799997688762332201467466 Q ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH Q ss_conf 13013534555653021024567774204225531552112346667899998877777666667789999851499988 Q gi|254780747|r 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 (293) Q Consensus 123 a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~ 202 (293) T Consensus 219 Mle~s~--------------------------------------YSVISPEGcAsI------Lwk------------d~~ 242 (322) T CHL00198 219 MLEYAV--------------------------------------YTVATPEACAAI------LWK------------DSK 242 (322) T ss_pred EECCEE--------------------------------------EEECCHHHHHHH------HCC------------CHH T ss_conf 452517--------------------------------------885488887787------336------------802 Q ss_pred HHHHHHCCCCCCHHHHHHCCCCCCCCCH Q ss_conf 9988734982378899877980623898 Q gi|254780747|r 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQ 230 (293) Q Consensus 203 ~~~~~~~g~~~~~~~A~~~GLvD~ig~~ 230 (293) T Consensus 243 ~a~eAAealkiTA~dL~~lgIID~II~E 270 (322) T CHL00198 243 KSAEAAEALKITSEDLLVLGIIDEILPE 270 (322) T ss_pred HHHHHHHHCCCCHHHHHHCCCCCEECCC T ss_conf 4799998701169999977997276368 |
|
| >COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0025 Score=40.86 Aligned_cols=158 Identities=20% Similarity=0.280 Sum_probs=101.9 Q ss_pred CCEEEEEEEEEEEC-------CHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHH------------------------H Q ss_conf 87289999766623-------8699999999986189987999975888888899------------------------9 Q gi|254780747|r 35 SPHVARIAIRGQIE-------DSQELIERIERISRDDSATALIVSLSSPGGSAYA------------------------G 83 (293) Q Consensus 35 ~~~i~~i~i~G~I~-------~~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~------------------------~ 83 (293) T Consensus 26 ~~giakItinRPevrNAfrP~TV~Em~~Af~~Ar~d~~iGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~~d~~~~rLnv 105 (282) T COG0447 26 VDGIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYVDDDGIPRLNV 105 (282) T ss_pred CCCEEEEEECCHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCEEEECCCCCEECCCCCCCCCCCCCCCCCC T ss_conf 68557998468666236787329999999986301788328998547888843505887121167777457666763000 Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCC- Q ss_conf 9999999984147867996033233223210001110001301353455565302102456777420422553155211- Q gi|254780747|r 84 EAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA- 162 (293) Q Consensus 84 ~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~- 162 (293) T Consensus 106 LdlQrlIR~--~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~---------------------VGSFD~G 162 (282) T COG0447 106 LDLQRLIRT--MPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPK---------------------VGSFDGG 162 (282) T ss_pred HHHHHHHHH--CCCCEEEEECCEEECCCCEEEEEEEEEEECCCCHHCCCCCC---------------------CCCCCCC T ss_conf 238889874--89655999703750586279998542550001311378998---------------------3420586 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHH----HHHHHH Q ss_conf 2346667899998877777666667789999851499988998873498237889987798062389899----999999 Q gi|254780747|r 163 EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEE----VWQSLY 238 (293) Q Consensus 163 ~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~----a~~~l~ 238 (293) T Consensus 163 ~Gs----------~yla-----------r~VGq----K-kArEIwfLcR~Y~A~eal~MGlVN~Vvp~~~LE~e~v~W~~ 216 (282) T COG0447 163 YGS----------SYLA-----------RIVGQ----K-KAREIWFLCRQYDAEEALDMGLVNTVVPHADLEKETVQWAR 216 (282) T ss_pred CCH----------HHHH-----------HHHHH----H-HHHHHHHHHHCCCHHHHHHCCCEEEECCHHHHHHHHHHHHH T ss_conf 447----------8999-----------98642----5-65654123310569999856871231338888899999999 Q ss_pred HHC Q ss_conf 741 Q gi|254780747|r 239 ALG 241 (293) Q Consensus 239 ~~~ 241 (293) T Consensus 217 E~l 219 (282) T COG0447 217 EML 219 (282) T ss_pred HHH T ss_conf 998 |
|
| >TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB; InterPro: IPR011968 This family of proteins are found within apparent operons for the degradation of phenylacetic acid | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00057 Score=44.94 Aligned_cols=162 Identities=31% Similarity=0.417 Sum_probs=110.6 Q ss_pred CCEEEEEEEEEEEC--CH-----HHHHHHHHHHHCCCCCCEEEEE-----------CC----CCCCCHH----HHHHHHH Q ss_conf 87289999766623--86-----9999999998618998799997-----------58----8888889----9999999 Q gi|254780747|r 35 SPHVARIAIRGQIE--DS-----QELIERIERISRDDSATALIVS-----------LS----SPGGSAY----AGEAIFR 88 (293) Q Consensus 35 ~~~i~~i~i~G~I~--~~-----~~l~~~l~~a~~d~~ik~ivL~-----------i~----SpGG~~~----~~~~i~~ 88 (293) T Consensus 6 ~~GV~~LTLNRPd~LNSF~~~MH~~l~~aL~~ver~~~~R~l~LTGAGRGFcAGQDL~dr~v~~~G~~pDLG~~ve~fYn 85 (259) T TIGR02280 6 EKGVARLTLNRPDKLNSFTAEMHAELREALERVERDDDARALLLTGAGRGFCAGQDLSDRNVTPGGAAPDLGETVEKFYN 85 (259) T ss_pred HCCEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC T ss_conf 25601431377001024008899999999866401575458887388874344655544678874225853221777507 Q ss_pred -HHHHHCC-CCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCC Q ss_conf -9998414-78679960332332232100011100013013534555653021024567774204225531552112346 Q gi|254780747|r 89 -AIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 (293) Q Consensus 89 -ai~~~k~-~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p 166 (293) T Consensus 86 PLvRrL~~Lp~PVv~AVNGVAAGAGAnLALAcDIvlAa~sA~------------FiqAF~klGL~PD--------sGGTw 145 (259) T TIGR02280 86 PLVRRLRALPKPVVCAVNGVAAGAGANLALACDIVLAARSAK------------FIQAFAKLGLIPD--------SGGTW 145 (259) T ss_pred HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHCCCCC--------CCCHH T ss_conf 489999726997798535103447788887511999987557------------9988875246779--------85000 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHH-HHHHHHHHHCC Q ss_conf 66789999887777766666778999985149998899887349823788998779806238989-99999997418 Q gi|254780747|r 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE-EVWQSLYALGV 242 (293) Q Consensus 167 ~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~-~a~~~l~~~~~ 242 (293) T Consensus 146 ~LP---------------------r~vG~ARA----~GLAl-lG~~LdA~~A~~WGLIW~~v~D~k~L~~~~~~LA~ 196 (259) T TIGR02280 146 LLP---------------------RLVGRARA----MGLAL-LGEKLDARTAAEWGLIWQVVDDAKALMDEAQALAA 196 (259) T ss_pred HHH---------------------HHHHHHHH----HHHHH-HCCCCCHHHHHHCCCEEEEEHHHHHHHHHHHHHHH T ss_conf 466---------------------89999999----99885-04846868897438644220057899999999999 |
These proteins contain the enoyl-CoA hydratase domain. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).. |
| >KOG1679 consensus | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0016 Score=42.11 Aligned_cols=134 Identities=22% Similarity=0.296 Sum_probs=88.6 Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHH-----------------HHHHHHHHHHHC-CCCCEEEEECCCCCCCCC Q ss_conf 99999999986189987999975888888899-----------------999999999841-478679960332332232 Q gi|254780747|r 51 QELIERIERISRDDSATALIVSLSSPGGSAYA-----------------GEAIFRAIQKVK-NRKPVITEVHEMAASAGY 112 (293) Q Consensus 51 ~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~-----------------~~~i~~ai~~~k-~~kpvva~~~~~~~S~~Y 112 (293) T Consensus 61 ~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~~Ev~~fV~~lR~~~~dIe~Lp~P~IAAidG~ALGGGL 140 (291) T KOG1679 61 KQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSPSEVTRFVNGLRGLFNDIERLPQPVIAAIDGAALGGGL 140 (291) T ss_pred HHHHHHHHHHHHCCCEEEEEEECCCCCEEECCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEHHCCHHCCCCH T ss_conf 99999999974078626999823898605447465765127999999999999999999985786501110200006515 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 10001110001301353455565302102456777420422553155211234666789999887777766666778999 Q gi|254780747|r 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 (293) Q Consensus 113 ~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~ 192 (293) T Consensus 141 ElALACDiRva~s~akmGLvET~------------laiiP---------GaG-----Gt----QRLpR------------ 178 (291) T KOG1679 141 ELALACDIRVAASSAKMGLVETK------------LAIIP---------GAG-----GT----QRLPR------------ 178 (291) T ss_pred HHHHHCCCEEHHHHCCCCCCCCC------------EEEEC---------CCC-----CC----CHHHH------------ T ss_conf 65554011002000300420012------------35510---------898-----64----12378------------ Q ss_pred HHHCCCCCHHHH-HHHHCCCCCCHHHHHHCCCCCCCCCHH Q ss_conf 985149998899-887349823788998779806238989 Q gi|254780747|r 193 VSESRNIPYDKT-LVLSDGRIWTGAEAKKVGLIDVVGGQE 231 (293) Q Consensus 193 Va~~R~~~~~~~-~~~~~g~~~~~~~A~~~GLvD~ig~~~ 231 (293) T Consensus 179 -----~vg~alaKELIftarvl~g~eA~~lGlVnhvv~qn 213 (291) T KOG1679 179 -----IVGVALAKELIFTARVLNGAEAAKLGLVNHVVEQN 213 (291) T ss_pred -----HHHHHHHHHHHHHHEECCCHHHHHCCHHHHHHHCC T ss_conf -----77488887673221012636677500679998627 |
|
| >PRK05654 acetyl-CoA carboxylase subunit beta; Validated | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.021 Score=35.07 Aligned_cols=125 Identities=19% Similarity=0.319 Sum_probs=79.8 Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCC-------CHHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCC--CCCCCCCC Q ss_conf 9999999998618998799997588888-------88999999999998414-78679960332332232--10001110 Q gi|254780747|r 51 QELIERIERISRDDSATALIVSLSSPGG-------SAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGY--LISCASNI 120 (293) Q Consensus 51 ~~l~~~l~~a~~d~~ik~ivL~i~SpGG-------~~~~~~~i~~ai~~~k~-~kpvva~~~~~~~S~~Y--~iAs~ad~ 120 (293) T Consensus 146 Eki~~a~e~A~~~-~~P-lI~~~~SGGaRMQEGi~SLmQMaKts~A~~~l~~~~lpyI~vlt~Pt-tGGvtASfa~lgDi 222 (288) T PRK05654 146 EKIVRAVERALEE-KCP-LVIFSASGGARMQEGLLSLMQMAKTSAALKRLSEAGLPYISVLTDPT-TGGVSASFAMLGDI 222 (288) T ss_pred HHHHHHHHHHHHC-CCC-EEEEECCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC-CCCEEEEECCCCCE T ss_conf 9999999999974-997-89996787633327467899889999999999976996899966898-58944430247877 Q ss_pred CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 00130135345556530210245677742042255315521123466678999988777776666677899998514999 Q gi|254780747|r 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 (293) Q Consensus 121 I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~ 200 (293) T Consensus 223 iiaEp~A~IgFAG~R-----------------------------------------VIeqt-----------i--~~~LP 248 (288) T PRK05654 223 IIAEPKALIGFAGPR-----------------------------------------VIEQT-----------V--REKLP 248 (288) T ss_pred EEEECCCEEEECCCH-----------------------------------------HHHHH-----------C--CCCCC T ss_conf 998058458731538-----------------------------------------99985-----------0--89899 Q ss_pred HHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC Q ss_conf 88998873498237889987798062389899999999741 Q gi|254780747|r 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293) Q Consensus 201 ~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293) T Consensus 249 ---------~~FQtae~ll~~G~iD~iv~R~~lk~~l~~ll 280 (288) T PRK05654 249 ---------EGFQRAEFLLEHGAIDMIVHRRELRDTLASLL 280 (288) T ss_pred ---------CCHHHHHHHHHCCCCCEEECHHHHHHHHHHHH T ss_conf ---------74011899997799636645899999999999 |
|
| >COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0033 Score=40.14 Aligned_cols=120 Identities=19% Similarity=0.299 Sum_probs=79.5 Q ss_pred HHHHHHHHHCCCCCCEEEEECCCCCCCHH-------HHHHHHHHHHHHCC-CCCEEEEECCCCCCCCCCCCCCCCCCCCC Q ss_conf 99999998618998799997588888889-------99999999998414-78679960332332232100011100013 Q gi|254780747|r 53 LIERIERISRDDSATALIVSLSSPGGSAY-------AGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAA 124 (293) Q Consensus 53 l~~~l~~a~~d~~ik~ivL~i~SpGG~~~-------~~~~i~~ai~~~k~-~kpvva~~~~~~~S~~Y~iAs~ad~I~a~ 124 (293) T Consensus 139 AlRlm~~Aek--F~lPiitfIDT~GAypG~~AEErGQ~eAIA~nL~em~~LkvP~I~iVIGEGgSGGALAi~vad~V~ml 216 (317) T COG0825 139 ALRLMKLAEK--FGLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIISIVIGEGGSGGALAIGVADRVLML 216 (317) T ss_pred HHHHHHHHHH--HCCCEEEEECCCCCCCCCCHHHCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH T ss_conf 9999999998--59987999508987788545650628999999999857999879999657875246776577899998 Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH Q ss_conf 01353455565302102456777420422553155211234666789999887777766666778999985149998899 Q gi|254780747|r 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT 204 (293) Q Consensus 125 p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~ 204 (293) T Consensus 217 e~s~--------------------------------------ySVisPEG~AsI------LWk------------D~~ka 240 (317) T COG0825 217 ENST--------------------------------------YSVISPEGCASI------LWK------------DASKA 240 (317) T ss_pred HHCE--------------------------------------EEECCHHHHHHH------HHC------------CHHHH T ss_conf 8441--------------------------------------220473132445------525------------83242 Q ss_pred HHHHCCCCCCHHHHHHCCCCCCCCCH Q ss_conf 88734982378899877980623898 Q gi|254780747|r 205 LVLSDGRIWTGAEAKKVGLIDVVGGQ 230 (293) Q Consensus 205 ~~~~~g~~~~~~~A~~~GLvD~ig~~ 230 (293) T Consensus 241 ~eAAe~mkita~dL~~lgiID~II~E 266 (317) T COG0825 241 KEAAEAMKITAHDLKELGIIDGIIPE 266 (317) T ss_pred HHHHHHCCCCHHHHHHCCCCCEECCC T ss_conf 99999827878889767975123468 |
|
| >TIGR01929 menB naphthoate synthase; InterPro: IPR010198 This entry represents an enzyme, naphthoate synthase |
|---|
Probab=96.57 E-value=0.038 Score=33.45 Aligned_cols=157 Identities=22% Similarity=0.307 Sum_probs=106.7 Q ss_pred CCEEEEEEEEEEECC-------HHHHHHHHHHHHCCCCCCEEEEECCCC---------------------------CCC- Q ss_conf 872899997666238-------699999999986189987999975888---------------------------888- Q gi|254780747|r 35 SPHVARIAIRGQIED-------SQELIERIERISRDDSATALIVSLSSP---------------------------GGS- 79 (293) Q Consensus 35 ~~~i~~i~i~G~I~~-------~~~l~~~l~~a~~d~~ik~ivL~i~Sp---------------------------GG~- 79 (293) T Consensus 11 ~d~i~~i~i~RP~V~NAFRP~T~~E~~~al~~aR~~~~iGVv~LtG~GPsPkdG~~AFCsGGDQ~irg~~GgY~d~~G~t 90 (278) T TIGR01929 11 DDGIAKITINRPQVRNAFRPRTVDEIIRALDDAREDPDIGVVILTGAGPSPKDGDKAFCSGGDQKIRGKSGGYIDESGVT 90 (278) T ss_pred CCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCEEEEECCCEEEECCCCCEECCCCCC T ss_conf 26378998437821147780048999999997137999627986176777888871265368523755877535578721 Q ss_pred -----HH-----HHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHCCCHHHHHHHHH Q ss_conf -----89-----9999999999841478679960332332232100011100013-013534555653021024567774 Q gi|254780747|r 80 -----AY-----AGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAA-ETSLVGSIGVLFQYPYVKPFLDKL 148 (293) Q Consensus 80 -----~~-----~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~-p~s~vGsiGv~~~~~~~~~ll~k~ 148 (293) T Consensus 91 adtvdPara~~LnvL~~qr~IR~~--PKpVia~V~Gya~GGGh~Lh~~CDLTiAsre~A~fgQtgp-------------- 154 (278) T TIGR01929 91 ADTVDPARASRLNVLEVQRLIRTL--PKPVIAMVNGYAIGGGHVLHVVCDLTIASREHARFGQTGP-------------- 154 (278) T ss_pred CCCCCCCCCCCCCHHHHHHHHHCC--CCCEEEEECCEEECCCEEEHHHHHHHHHHHHCCCCCCCCC-------------- T ss_conf 133363124656346554586418--9816887537532576201332302265321340147887-------------- Q ss_pred HHCCEEEEECCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH-HHHCCCCCCHHHHHHCCCCCC Q ss_conf 20422553155211-2346667899998877777666667789999851499988998-873498237889987798062 Q gi|254780747|r 149 GVSIKSVKSSPMKA-EPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLIDV 226 (293) Q Consensus 149 gi~~~~~~~g~~K~-~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~-~~~~g~~~~~~~A~~~GLvD~ 226 (293) T Consensus 155 -------kVGSFDgGyGs----------aYlA-----------R~v----G--QKkaREiwFlcrqY~A~~a~~MG~VN~ 200 (278) T TIGR01929 155 -------KVGSFDGGYGS----------AYLA-----------RIV----G--QKKAREIWFLCRQYDAEEAEKMGLVNA 200 (278) T ss_pred -------CCCCCCCCHHH----------HHHH-----------HHH----C--CCHHHHEEECCCCCCHHHHHHCCCCEE T ss_conf -------73566563457----------8998-----------640----5--500011000156325688973795301 Q ss_pred CCCHHH----HHHHHHHHC Q ss_conf 389899----999999741 Q gi|254780747|r 227 VGGQEE----VWQSLYALG 241 (293) Q Consensus 227 ig~~~~----a~~~l~~~~ 241 (293) T Consensus 201 VV~~a~Le~~~i~wa~~il 219 (278) T TIGR01929 201 VVPLADLEKETIEWAREIL 219 (278) T ss_pred ECCHHHHHHHHHHHHHHHH T ss_conf 0035445589999999986 |
1.3.36 "/>, MenB or dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Menaquinone (vitamin K2), is an essential quinone used in electron-transfer pathways serving as the major electron carrier during anaerobic growth. In the bacterium, the biosynthetic pathway in bacteria typically comprises 6-7 steps . Together with o-succinylbenzoate-CoA ligase (menE IPR010192 from INTERPRO),MenB takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoic acid (DHNA) , , , . The conversion of o-succinylbenzoate-CoA ligase to DHNA is mediated by the enzyme DHNA synthase, which is encoded by menB . The protein structure of naphthoate synthase has been expressed in Escherichia coli, purified and crystallized, and found to have fold characteristics of the crotonase family of enzymes, which is notable for the presence of several highly flexible regions around the active site. The C-terminal region of the protein may play a critical role both in completion of the binding pocket and in stabilisation of the hexamer, suggesting a link between oligomerization and catalytic activity . Included in this entry are two enzymes from Arabidopsis thaliana and one from Staphylococcus aureus, which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.; GO: 0008935 naphthoate synthase activity, 0009234 menaquinone biosynthetic process. |
| >TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; InterPro: IPR001095 This entry contains the alpha subunit the acetyl coenzyme A carboxylase complex ( |
|---|
Probab=96.51 E-value=0.0066 Score=38.22 Aligned_cols=121 Identities=20% Similarity=0.288 Sum_probs=80.5 Q ss_pred HHHHHHHHHHCCCC-CCEEEEECCCCCCCH-------HHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCCCCCCCCCCCC Q ss_conf 99999999861899-879999758888888-------999999999998414-786799603323322321000111000 Q gi|254780747|r 52 ELIERIERISRDDS-ATALIVSLSSPGGSA-------YAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIV 122 (293) Q Consensus 52 ~l~~~l~~a~~d~~-ik~ivL~i~SpGG~~-------~~~~~i~~ai~~~k~-~kpvva~~~~~~~S~~Y~iAs~ad~I~ 122 (293) T Consensus 144 GYRKALrLm~~AerF~~PIi~fiDT~GAYPGigAEerGQsEAIA~NL~Ema~L~VPvic~vIGEGGSGGALaiGVGDkv~ 223 (329) T TIGR00513 144 GYRKALRLMKMAERFNLPIITFIDTPGAYPGIGAEERGQSEAIAKNLREMARLKVPVICTVIGEGGSGGALAIGVGDKVN 223 (329) T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHH T ss_conf 04799999987776179858865388887562044505278999998997109988799985268614789998988998 Q ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH Q ss_conf 13013534555653021024567774204225531552112346667899998877777666667789999851499988 Q gi|254780747|r 123 AAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 (293) Q Consensus 123 a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~ 202 (293) T Consensus 224 MLeyS~--------------------------------------YSViSPEGCAai------LWk------------da~ 247 (329) T TIGR00513 224 MLEYST--------------------------------------YSVISPEGCAAI------LWK------------DAS 247 (329) T ss_pred HHHHHH--------------------------------------HCCCCHHHHHHH------CCC------------CHH T ss_conf 876202--------------------------------------200087889986------067------------962 Q ss_pred HHHHHHCCCCCCHHHHHHCCCCCCCC Q ss_conf 99887349823788998779806238 Q gi|254780747|r 203 KTLVLSDGRIWTGAEAKKVGLIDVVG 228 (293) Q Consensus 203 ~~~~~~~g~~~~~~~A~~~GLvD~ig 228 (293) T Consensus 248 ka~~Aa~amkItA~dLkel~lID~iI 273 (329) T TIGR00513 248 KAEKAAEAMKITAPDLKELGLIDSII 273 (329) T ss_pred HHHHHHHHHCCCHHHHHHCCCCCCCC T ss_conf 67999998378921566401343101 |
4.1.2" />). It catalyzes the first step in the synthesis of long-chain fatty acids which involves the carboxylation of acetyl-CoA to malonyl-CoA. The acetyl-CoA carboxylase complex ( |
| >COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.094 Score=30.97 Aligned_cols=125 Identities=22% Similarity=0.353 Sum_probs=81.9 Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCC-------CHHHHHHHHHHHHHHCC-CCCEEEEECCCCCCCCCC--CCCCCCC Q ss_conf 9999999998618998799997588888-------88999999999998414-786799603323322321--0001110 Q gi|254780747|r 51 QELIERIERISRDDSATALIVSLSSPGG-------SAYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYL--ISCASNI 120 (293) Q Consensus 51 ~~l~~~l~~a~~d~~ik~ivL~i~SpGG-------~~~~~~~i~~ai~~~k~-~kpvva~~~~~~~S~~Y~--iAs~ad~ 120 (293) T Consensus 144 eki~ra~E~A~e~k-~P~v~f~-aSGGARMQEg~lSLMQMaktsaAl~~l~ea~lpyIsVLt~PT-tGGVsASfA~lGDi 220 (294) T COG0777 144 EKITRAIERAIEDK-LPLVLFS-ASGGARMQEGILSLMQMAKTSAALKRLSEAGLPYISVLTDPT-TGGVSASFAMLGDI 220 (294) T ss_pred HHHHHHHHHHHHHC-CCEEEEE-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC-CCCHHHHHHHCCCE T ss_conf 99999999999857-9889995-676465768899999999999999999875996699955898-66646767752674 Q ss_pred CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 00130135345556530210245677742042255315521123466678999988777776666677899998514999 Q gi|254780747|r 121 IVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIP 200 (293) Q Consensus 121 I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~ 200 (293) T Consensus 221 ~iAEP~AlIGFAGpRVI--------------------------------------E--QTire--------------~LP 246 (294) T COG0777 221 IIAEPGALIGFAGPRVI--------------------------------------E--QTIRE--------------KLP 246 (294) T ss_pred EECCCCCCCCCCCCHHH--------------------------------------H--HHHCC--------------CCC T ss_conf 65176300015763244--------------------------------------6--56443--------------168 Q ss_pred HHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC Q ss_conf 88998873498237889987798062389899999999741 Q gi|254780747|r 201 YDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293) Q Consensus 201 ~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293) T Consensus 247 --------eg-fQ~aEfLlehG~iD~iv~R~elr~tla~ll 278 (294) T COG0777 247 --------EG-FQTAEFLLEHGMIDMIVHRDELRTTLASLL 278 (294) T ss_pred --------CC-HHHHHHHHHCCCCCEEECHHHHHHHHHHHH T ss_conf --------62-346899997587305633588999999999 |
|
| >KOG0016 consensus | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.12 Score=30.23 Aligned_cols=140 Identities=19% Similarity=0.174 Sum_probs=82.9 Q ss_pred HHHHHHHHHHHHCCCCCCEEEEECC----CCCCCHH------------HHHHHHH-------HHHHHC-CCCCEEEEECC Q ss_conf 6999999999861899879999758----8888889------------9999999-------999841-47867996033 Q gi|254780747|r 50 SQELIERIERISRDDSATALIVSLS----SPGGSAY------------AGEAIFR-------AIQKVK-NRKPVITEVHE 105 (293) Q Consensus 50 ~~~l~~~l~~a~~d~~ik~ivL~i~----SpGG~~~------------~~~~i~~-------ai~~~k-~~kpvva~~~~ 105 (293) T Consensus 37 y~~i~~al~~a~~dds~~~tv~s~~G~~f~sG~Df~~~~~~~~~d~~~~~~~~~~~v~~~~~~v~~fi~f~Kplia~vNG 116 (266) T KOG0016 37 YVYIQRALEEANDDDSVSITVLSSNGSYFCSGLDFSPFAKALDDDANEESDKASKFVKNVSCFVNTFINFPKPLVALVNG 116 (266) T ss_pred HHHHHHHHHHHHCCCCEEEEEEECCCCEEEECCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECC T ss_conf 99999999876504655899994376178506665156653798600011046777777999999974589877999437 Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 23322321000111000130135345556530210245677742042255315521123466678999988777776666 Q gi|254780747|r 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185 (293) Q Consensus 106 ~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~ 185 (293) T Consensus 117 PAIGlgasil~lcD~V~A~Dka~------------F~TPfa~lGq~PEG~Ss~t~------------------------- 159 (266) T KOG0016 117 PAIGLGASILPLCDYVWASDKAW------------FQTPFAKLGQSPEGCSSVTL------------------------- 159 (266) T ss_pred CCCCHHHHHHHHHHEEEECCCEE------------EECCCHHCCCCCCCCEEEEE------------------------- T ss_conf 73131257764311688525237------------85560122779886204662------------------------- Q ss_pred HHHHHHHHHHCCCCCHHH-HHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHH Q ss_conf 677899998514999889-988734982378899877980623898999999 Q gi|254780747|r 186 YHWFVRLVSESRNIPYDK-TLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQS 236 (293) Q Consensus 186 ~~~f~~~Va~~R~~~~~~-~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~ 236 (293) T Consensus 160 ----------p~imG~~~A~E~ll~~~kltA~Ea~~~glVskif~~~tf~~~ 201 (266) T KOG0016 160 ----------PKIMGSASANEMLLFGEKLTAQEACEKGLVSKIFPAETFNEE 201 (266) T ss_pred ----------HHHHCHHHHHHHHHHCCCCCHHHHHHCCCHHHHCCHHHHHHH T ss_conf ----------175352568889993883308899863825320675777899 |
|
| >KOG1682 consensus | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.23 Score=28.48 Aligned_cols=142 Identities=22% Similarity=0.289 Sum_probs=93.9 Q ss_pred HHHHHHHHHHCCCCCCEEEEECCCC---------------CCCHHH--HHHHHHHHHHHCC-CCCEEEEECCCCCCCCCC Q ss_conf 9999999986189987999975888---------------888899--9999999998414-786799603323322321 Q gi|254780747|r 52 ELIERIERISRDDSATALIVSLSSP---------------GGSAYA--GEAIFRAIQKVKN-RKPVITEVHEMAASAGYL 113 (293) Q Consensus 52 ~l~~~l~~a~~d~~ik~ivL~i~Sp---------------GG~~~~--~~~i~~ai~~~k~-~kpvva~~~~~~~S~~Y~ 113 (293) T Consensus 63 ~Lq~~ll~d~d~~dlr~viita~GkifSaGH~LKELt~e~g~d~haevFqtc~dvmn~Irn~pVPVia~VNG~AaAAGcQ 142 (287) T KOG1682 63 ALQDALLKDKDNLDLRCVIITAQGKIFSAGHNLKELTNEPGSDIHAEVFQTCTDVMNDIRNLPVPVIAKVNGYAAAAGCQ 142 (287) T ss_pred HHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHCCCE T ss_conf 99999851244465159999358852246545777624755207899999999999998649986698854433421554 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 00011100013013534555653021024567774204225531552112346667899998877777666667789999 Q gi|254780747|r 114 ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLV 193 (293) Q Consensus 114 iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~V 193 (293) T Consensus 143 LVaSCD~vVa~k~SkF~tPG~----------------~vGlFC-----ST-----P----------------------Gv 174 (287) T KOG1682 143 LVASCDMVVATKNSKFSTPGA----------------GVGLFC-----ST-----P----------------------GV 174 (287) T ss_pred EEEEEEEEEEECCCCCCCCCC----------------CEEEEE-----CC-----C----------------------CH T ss_conf 888603899705764458988----------------545675-----68-----5----------------------06 Q ss_pred HHCCCCCHH-HHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC Q ss_conf 851499988-998873498237889987798062389899999999741 Q gi|254780747|r 194 SESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293) Q Consensus 194 a~~R~~~~~-~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293) T Consensus 175 AlaRavpRkva~~ML~Tg~Pi~~eeAl~sGlvskvVp~~el~~e~~~i~ 223 (287) T KOG1682 175 ALARAVPRKVAAYMLMTGLPITGEEALISGLVSKVVPAEELDKEIEEIT 223 (287) T ss_pred HHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 6765155267799987179776499998404651477888778999999 |
|
| >CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.3 Score=27.85 Aligned_cols=138 Identities=19% Similarity=0.216 Sum_probs=81.5 Q ss_pred EEEEEEEEEEECC---------------------HHHHHHHHHHHHCCCCCCEEEEECCCCCC-----CHH---HHHHHH Q ss_conf 2899997666238---------------------69999999998618998799997588888-----889---999999 Q gi|254780747|r 37 HVARIAIRGQIED---------------------SQELIERIERISRDDSATALIVSLSSPGG-----SAY---AGEAIF 87 (293) Q Consensus 37 ~i~~i~i~G~I~~---------------------~~~l~~~l~~a~~d~~ik~ivL~i~SpGG-----~~~---~~~~i~ 87 (293) T Consensus 130 ~dAvv~g~G~I~g~~vvv~vmDF~FmGGSMGsvvGEki~ra~e~A~~~-k~P-lIi~saS-GGARMQEGilSLMQMaKts 206 (305) T CHL00174 130 TDAVQTGIGQLNGIPVALGVMDFQFMGGSMGSVVGEKITRLIEYATNE-SLP-LIIVCAS-GGARMQEGSLSLMQMAKIS 206 (305) T ss_pred CEEEEEEEEEECCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHC-CCC-EEEEECC-CCCCCCCCHHHHHHHHHHH T ss_conf 807999999999977999997240115652078899999999999973-997-8999078-7634346277898779999 Q ss_pred HHHHHH-CC-CCCEEEEECCCCCCCCCC--CCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCC Q ss_conf 999984-14-786799603323322321--00011100013013534555653021024567774204225531552112 Q gi|254780747|r 88 RAIQKV-KN-RKPVITEVHEMAASAGYL--ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAE 163 (293) Q Consensus 88 ~ai~~~-k~-~kpvva~~~~~~~S~~Y~--iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~ 163 (293) T Consensus 207 ~Al~~~~~~~~lpyIsvlt~PT-tGGVtASfA~lgDiiiAEP~AlIGFAG~R---V------------------------ 258 (305) T CHL00174 207 SALYDYQSNKKLFYISILTSPT-TGGVTASFGMLGDIIIAEPNAYIAFAGKR---V------------------------ 258 (305) T ss_pred HHHHHHHHCCCCCEEEEECCCC-CCCCEEEECCCCCEEEECCCCEEEECCCH---H------------------------ T ss_conf 9999998457873899973788-77801241025665897588667605617---8------------------------ Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC Q ss_conf 346667899998877777666667789999851499988998873498237889987798062389899999999741 Q gi|254780747|r 164 PSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293) Q Consensus 164 ~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293) T Consensus 259 --------------Ieq-----------Ti--~~~LP---------egFQtaEfllehG~iD~IV~R~~lk~~l~~lL 300 (305) T CHL00174 259 --------------IEQ-----------TL--NKTVP---------EGSQAAEYLFHKGLFDLIVPRNLLKGVLSELF 300 (305) T ss_pred --------------HHH-----------HH--CCCCC---------CCCCCHHHHHHCCCCCEEECHHHHHHHHHHHH T ss_conf --------------888-----------61--89899---------86322699997799716765899999999999 |
|
| >TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit; InterPro: IPR000438 Fatty acid synthesis involves a set of reactions, commencing with carboxylation of acetyl-CoA to malonyl-CoA | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.16 Score=29.51 Aligned_cols=139 Identities=19% Similarity=0.261 Sum_probs=89.9 Q ss_pred CEEEEEEEEEEECC---------------------HHHHHHHHHHHHCCCCCCEEEEECCCCCC-------CHHHHHHHH Q ss_conf 72899997666238---------------------69999999998618998799997588888-------889999999 Q gi|254780747|r 36 PHVARIAIRGQIED---------------------SQELIERIERISRDDSATALIVSLSSPGG-------SAYAGEAIF 87 (293) Q Consensus 36 ~~i~~i~i~G~I~~---------------------~~~l~~~l~~a~~d~~ik~ivL~i~SpGG-------~~~~~~~i~ 87 (293) T Consensus 113 ~~dAv~tg~G~l~~~P~~~av~dF~FmGGSmGSVvGeK~vraie~A~~~-~~P~~i~sA-SGGARMQE~~~SLMQMAKtS 190 (292) T TIGR00515 113 LKDAVVTGKGTLYGMPIVVAVMDFSFMGGSMGSVVGEKIVRAIEKAVAD-RVPLVIFSA-SGGARMQEGLLSLMQMAKTS 190 (292) T ss_pred CCCCEEEEEEEECCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHC-CCCEEEEEC-CCCHHHHHHHHHHHHHHHHH T ss_conf 8651686003754842799975143458863026888999999999873-798899967-87516899988898889999 Q ss_pred HHHHHHCCCC-CEEEEECCCCCCCCCC--CCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCC Q ss_conf 9999841478-6799603323322321--000111000130135345556530210245677742042255315521123 Q gi|254780747|r 88 RAIQKVKNRK-PVITEVHEMAASAGYL--ISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEP 164 (293) Q Consensus 88 ~ai~~~k~~k-pvva~~~~~~~S~~Y~--iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~ 164 (293) T Consensus 191 aAL~~~~E~~lp~ISvLTdP-T~GGVSASFA~LGDL~iAEPkAlIGFAGpRVI----------------eQT~re----- 248 (292) T TIGR00515 191 AALARLSEEKLPYISVLTDP-TTGGVSASFAMLGDLNIAEPKALIGFAGPRVI----------------EQTIRE----- 248 (292) T ss_pred HHHHHHHHCCCCEEEECCCC-CCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEE----------------EECCCC----- T ss_conf 99974212258724413688-97226789876402544156423127875023----------------232656----- Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHH Q ss_conf 4666789999887777766666778999985149998899887349823788998779806238989999999974 Q gi|254780747|r 165 SPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 (293) Q Consensus 165 ~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~ 240 (293) T Consensus 249 ---------------------------------kLPeg---------FQtsEFLL~hG~iD~iV~R~~lk~tL~~l 282 (292) T TIGR00515 249 ---------------------------------KLPEG---------FQTSEFLLEHGAIDMIVHRPDLKKTLASL 282 (292) T ss_pred ---------------------------------CCCCC---------HHHHHHHHHCCCEEEEECCHHHHHHHHHH T ss_conf ---------------------------------58670---------03589998459512566277999999999 |
This is an irreversible reaction, catalysed by the acetyl-CoA carboxylase complex (6.4.1.2 from EC); a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase and two non-identical carboxyl transferase subunits (alpha and beta) in a 2:2 association . The reaction involves two steps: |
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB; InterPro: IPR012799 Members of this family represent the alpha subunit of the multifunctional enzyme complex of the fatty acid degradation cycle | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.34 Score=27.48 Aligned_cols=139 Identities=19% Similarity=0.296 Sum_probs=95.0 Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCC----CCCCHHH------------------HHHHHHHHHHHCCCCCEEEEECCCCC Q ss_conf 9999999998618998799997588----8888899------------------99999999984147867996033233 Q gi|254780747|r 51 QELIERIERISRDDSATALIVSLSS----PGGSAYA------------------GEAIFRAIQKVKNRKPVITEVHEMAA 108 (293) Q Consensus 51 ~~l~~~l~~a~~d~~ik~ivL~i~S----pGG~~~~------------------~~~i~~ai~~~k~~kpvva~~~~~~~ 108 (293) T Consensus 38 a~L~~A~d~~~~~s~~kg~~l~S~K~~FIVGADITEFl~~F~~p~~~L~~w~~~AN~~F~~lEDL--pvPT~aa~~G~aL 115 (716) T TIGR02437 38 ASLDKALDALKAQSDLKGLLLTSGKDAFIVGADITEFLGLFAKPDEELLQWLEFANSVFNKLEDL--PVPTVAAVKGFAL 115 (716) T ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCC--CCCHHHHHCCCCC T ss_conf 99999999986325741789860873688617489998752488789999998888887540368--8874554045334 Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 22321000111000130135345556530210245677742042255315521123466678999988777776666677 Q gi|254780747|r 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHW 188 (293) Q Consensus 109 S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~ 188 (293) T Consensus 116 GGG~E~~LAtD~R~~~~~~~IGLPE------------~KLGI~P---------GFGG----------------------- 151 (716) T TIGR02437 116 GGGCECVLATDFRIADKTAKIGLPE------------TKLGIMP---------GFGG----------------------- 151 (716) T ss_pred CCHHHHHHHCCCCCCCCCCCCCCCC------------HHCCCCC---------CCCC----------------------- T ss_conf 6417878760100036765326873------------0104568---------8987----------------------- Q ss_pred HHHHHHHCCCCCHH-HHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHH Q ss_conf 89999851499988-998873498237889987798062389899999999 Q gi|254780747|r 189 FVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLY 238 (293) Q Consensus 189 f~~~Va~~R~~~~~-~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~ 238 (293) T Consensus 152 ---~VRlPR~iGaD~A~E~I~~Gk~~rAe~ALKvg~vDaVV~~~~L~~~A~ 199 (716) T TIGR02437 152 ---TVRLPRVIGADSALEIIASGKEVRAEDALKVGLVDAVVKADKLEAAAL 199 (716) T ss_pred ---CEECCHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHH T ss_conf ---440550113103678873574123034542124531045678999999 |
Activities include: enoyl-CoA hydratase (4.2.1.17 from EC), dodecenoyl-CoA delta-isomerase activity (5.3.3.8 from EC), 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) and 3-hydroxybutyryl-CoA epimerase (5.1.2.3 from EC). A representative is Escherichia coli FadB (P21177 from SWISSPROT). This entry excludes the FadJ family represented by P77399 from SWISSPROT.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0004165 dodecenoyl-CoA delta-isomerase activity, 0004300 enoyl-CoA hydratase activity, 0008692 3-hydroxybutyryl-CoA epimerase activity, 0009062 fatty acid catabolic process, 0016507 fatty acid beta-oxidation multienzyme complex. |
| >PRK10949 protease 4; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=318.55 Aligned_cols=240 Identities=19% Similarity=0.245 Sum_probs=200.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HCCCCCCCCCCEEEEEEEEEEECCH---------------------------HHH Q ss_conf 58999999999999999999997--0565556778728999976662386---------------------------999 Q gi|254780747|r 3 FVLKKIKTRYVMLSLVTLTVVYF--SWSSHVEDNSPHVARIAIRGQIEDS---------------------------QEL 53 (293) Q Consensus 3 ~~~~~i~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~i~~i~i~G~I~~~---------------------------~~l 53 (293) T Consensus 21 ~~R~~i~nl~f~~~i~~~v~~~~~~~~~~~~~~~~~~aL~ldl~G~lvdq~~~~~p~~~l~~~~~g~~~~~~~e~~L~Di 100 (618) T PRK10949 21 FVREMVLNLFFIFLILVGVGIWMQVSNGDSPETASRGALLLDISGVIVDKPSSNNKLRQLGRQLLGASSDRLQENSLFDI 100 (618) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCHHHH T ss_conf 99999999999999999999987404788855687857998488607616888885999999851788775441029999 Q ss_pred HHHHHHHHCCCCCCEEEEECCC-CCCCHHHHHHHHHHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHH Q ss_conf 9999998618998799997588-8888899999999999841-4786799603323322321000111000130135345 Q gi|254780747|r 54 IERIERISRDDSATALIVSLSS-PGGSAYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS 131 (293) Q Consensus 54 ~~~l~~a~~d~~ik~ivL~i~S-pGG~~~~~~~i~~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGs 131 (293) T Consensus 101 v~aI~~Aa~D~rI~givLdl~~~~g~~~a~l~eI~~AL~~FK~SGK~ViAy~d~y-sq~~YyLAS~AD~I~L~P~G~v~l 179 (618) T PRK10949 101 VNTIRQAKDDRNITGIVLDLKNFAGADQPSMQYIGKALREFRDSGKPVYAVGDNY-SQGQYYLASFANKIWLSPQGVVDL 179 (618) T ss_pred HHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCC-CCCCEEEEEECCEEEECCCCEEEE T ss_conf 9999985149982599997777888788999999999999998199399996677-853010211077789889966878 Q ss_pred HHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH----H Q ss_conf 556530210245677742042255315521123466--6789999887777766666778999985149998899----8 Q gi|254780747|r 132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT----L 205 (293) Q Consensus 132 iGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~--~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~----~ 205 (293) T Consensus 180 ~Gl~~~~~y~K~lLdKlgI~~~vfrvG~YKSAvEpf~r~~MS~e~re~~~~~l~~lw~~~~~~Ia~~R~l~~~~l~~~~~ 259 (618) T PRK10949 180 HGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQITPQQLFPGAQ 259 (618) T ss_pred ECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH T ss_conf 66301177899999974982899981375674651114459999999999999999999999999865999789777799 Q ss_pred HHHC----CCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCCC Q ss_conf 8734----9823788998779806238989999999974187 Q gi|254780747|r 206 VLSD----GRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243 (293) Q Consensus 206 ~~~~----g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~~~ 243 (293) T Consensus 260 ~~~~~l~~~~g~~a~~Al~~gLVD~l~~~~e~~~~l~~~~g~ 301 (618) T PRK10949 260 GILEGLTKVGGDTAKYALDNKLVDALASSAEIEKALTKAFGW 301 (618) T ss_pred HHHHHHHHHCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHCC T ss_conf 999999870884099998769985467688999999998488 |
|
| >TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type; InterPro: IPR004634 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-39 Score=265.63 Aligned_cols=238 Identities=23% Similarity=0.292 Sum_probs=196.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCC----CCCCCCEEEEEEEEEEECCH---------------------------HHHH Q ss_conf 9999999999999999999705655----56778728999976662386---------------------------9999 Q gi|254780747|r 6 KKIKTRYVMLSLVTLTVVYFSWSSH----VEDNSPHVARIAIRGQIEDS---------------------------QELI 54 (293) Q Consensus 6 ~~i~~~~~~~~~i~~~~~~~~~~~~----~~~~~~~i~~i~i~G~I~~~---------------------------~~l~ 54 (293) T Consensus 8 R~l~lnvvfl~L~~~~~~~l~~~~s~~~s~~~~~~galLL~~~G~~~~~~d~~~r~~~l~~~l~G~~~~~lq~~~l~dvv 87 (614) T TIGR00705 8 RELVLNVVFLLLVLLGVKILVILSSGEASKKLESKGALLLDLAGVVVDVQDESPRLSDLLQELLGNQKERLQKISLFDVV 87 (614) T ss_pred HHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHCCCEEEECCCEEEECCCCCHHHHHHHHHHCCCCCHHHHHCCHHHHH T ss_conf 89999999999999876564200277654134523313451473378547765579999997535753035540255899 Q ss_pred HHHHHHHCCCCCCEEEEECC-CCCCC-HHHHHHHHHHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHH Q ss_conf 99999861899879999758-88888-899999999999841-4786799603323322321000111000130135345 Q gi|254780747|r 55 ERIERISRDDSATALIVSLS-SPGGS-AYAGEAIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS 131 (293) Q Consensus 55 ~~l~~a~~d~~ik~ivL~i~-SpGG~-~~~~~~i~~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGs 131 (293) T Consensus 88 ~Ai~~A~~D~~I~~~~~DL~~~~g~dG~~~l~~~~~AL~~Fk~SgKpv~ay~~nY-S~~~YYLAsfAd~I~L~p~G~Vdl 166 (614) T TIGR00705 88 NAIRQAADDRRIEGLVLDLKNFEGVDGSPALSEIGKALSEFKDSGKPVYAYGENY-SQGQYYLASFADEILLNPMGSVDL 166 (614) T ss_pred HHHHHHCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCC-CCHHHHHHHHHHHHHCCCCCCEEC T ss_conf 9998301278708999733323576677327988999999985699089985253-402368876540240368872450 Q ss_pred HHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCHHHHHHH Q ss_conf 556530210245677742042255315521123466--678999988777776666677899998514--9998899887 Q gi|254780747|r 132 IGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--SEVNPKAVQMMQDVVDSSYHWFVRLVSESR--NIPYDKTLVL 207 (293) Q Consensus 132 iGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~--~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R--~~~~~~~~~~ 207 (293) T Consensus 167 ~Gl~~~~Lfy~~~l~K~~v~~~~~rvG~YKgavEpF~R~d~SPe~r~~~q~~l~~lWq~YL~~Va~NRsl~~~~~~~~~~ 246 (614) T TIGR00705 167 HGLATETLFYKGMLDKLGVSVHVFRVGTYKGAVEPFLREDMSPEARENQQRWLGELWQNYLSSVAENRSLAIPKEQVLPS 246 (614) T ss_pred CCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCC T ss_conf 35244764088799761286216896210242142355566888899999999999988888887031135708760211 Q ss_pred HCCCCC--------CHHHHHHCCCCCCCCCHHHHHHHHHHHCCCC Q ss_conf 349823--------7889987798062389899999999741877 Q gi|254780747|r 208 SDGRIW--------TGAEAKKVGLIDVVGGQEEVWQSLYALGVDQ 244 (293) Q Consensus 208 ~~g~~~--------~~~~A~~~GLvD~ig~~~~a~~~l~~~~~~~ 244 (293) T Consensus 247 a~~~L~~l~~~~g~~~~~a~~~~lV~~~~~~~~~~~~l~~~~e~~ 291 (614) T TIGR00705 247 AQGLLEALKKLKGDLAKYALEEKLVTAVVSQAEVEKALKELFEED 291 (614) T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCC T ss_conf 212467877513547899987657899873517531044444887 |
They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. Signal peptides of secretory proteins seem to serve at least two important biological functions. First, they are required for protein targeting to and translocation across membranes, such as the eubacterial plasma membrane and the endoplasmic reticular membrane of eukaryotes. Second, in addition to their role as determinants for protein targeting and translocation, certain signal peptides have a signalling function. During or shortly after pre-protein translocation, the signal peptide is removed by signal peptidases. The integral membrane protein, SppA (protease IV), of Escherichia coli was shown experimentally to degrade signal peptides. The member of this family from Bacillus subtilis has only been shown to be required for efficient processing of pre-proteins under conditions of hyper-secretion . These enzymes have a molecular mass around 67 kDa and a duplication such that the N-terminal half shares extensive homology with the C-terminal half and was shown in E. coli to form homotetramers. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both. ; GO: 0009003 signal peptidase activity, 0006465 signal peptide processing, 0016021 integral to membrane. |
| >PRK11778 putative periplasmic protease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=313.01 Aligned_cols=236 Identities=21% Similarity=0.345 Sum_probs=195.0 Q ss_pred CCCCEEEEEEEEEEECCH--H----HHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-CCCEEEEECC Q ss_conf 778728999976662386--9----99999999861899879999758888888999999999998414-7867996033 Q gi|254780747|r 33 DNSPHVARIAIRGQIEDS--Q----ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHE 105 (293) Q Consensus 33 ~~~~~i~~i~i~G~I~~~--~----~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~-~kpvva~~~~ 105 (293) T Consensus 66 ~~~~r~fvldF~Gdi~As~v~~LReeitaiL~~a~~~---DeV~~rles~GG~v~~yglaasql~rlr~~~i~ltv~vd~ 142 (317) T PRK11778 66 LGKPRVFVLDFKGDIDASEVESLREEITAILAVAKPG---DEVLLRLESPGGVVHGYGLAASQLQRLRDAGIPLTVCVDK 142 (317) T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCC---CEEEEEEECCCCEEEHHHHHHHHHHHHHHCCCCEEEEEEE T ss_conf 5786399995468603776777899999999748789---8699999789956660577999999998679928999701 Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 23322321000111000130135345556530210245677742042255315521123466678999988777776666 Q gi|254780747|r 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185 (293) Q Consensus 106 ~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~ 185 (293) T Consensus 143 VAASGGY~mAc~ADkIvA~P~tItGSIGVia~~Pnf~~lLkK~GI~~e~~taG~~K~tlt~f~e~T~e~r~k~q~~le~~ 222 (317) T PRK11778 143 VAASGGYMMACVADKIIAAPFAIVGSIGVVAQIPNFHRLLKKHDIDFELHTAGEYKRTLTLFGENTEEGREKFREELEET 222 (317) T ss_pred EECCCCEEEEECCCEEEECCCCEEEEEEEEEECCCHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHH T ss_conf 30243022652188799878634653210166658899999859965998145677777888999999999999999999 Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHH Q ss_conf 67789999851499988998873498237889987798062389899999999741877653012014421124556511 Q gi|254780747|r 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 (293) Q Consensus 186 ~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (293) T Consensus 223 h~~Fk~~Va~~Rp~--~did~VAtGrvW~G~qAlelGLVDeIgTsDd~l~~~~~~~~v---~~v-~~~~kk~-l~~r-l~ 294 (317) T PRK11778 223 HQLFKDFVQRYRPQ--LDIDKVATGEHWYGQQALELGLVDEIQTSDDYLLELMEEREV---LKV-RYQQKKK-LIER-LG 294 (317) T ss_pred HHHHHHHHHHCCCC--CCHHHHCCCCEEEHHHHHHCCCCCCCCCHHHHHHHHHCCCCE---EEE-EEEECCC-HHHH-HH T ss_conf 99999999863984--547875687577577698759974256689999987233848---999-9750799-8999-88 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 04778788888887 Q gi|254780747|r 266 LSISSLLEDTIPLM 279 (293) Q Consensus 266 ~~~~~~~~~~~~~l 279 (293) T Consensus 295 ~~~~~~~~~~~~~~ 308 (317) T PRK11778 295 GSAAESADRLLLRL 308 (317) T ss_pred HHHHHHHHHHHHHH T ss_conf 99999999999999 |
|
| >pfam01343 Peptidase_S49 Peptidase family S49 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=294.67 Aligned_cols=152 Identities=34% Similarity=0.590 Sum_probs=148.5 Q ss_pred HHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCC Q ss_conf 84147867996033233223210001110001301353455565302102456777420422553155211234666789 Q gi|254780747|r 92 KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171 (293) Q Consensus 92 ~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s 171 (293) T Consensus 2 ~~~~~KPV~a~~~~~aaSg~Y~lAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~~~~~~~~s 81 (154) T pfam01343 2 ALRAGKPVVAYAGNYAASGGYYLASAADKIVANPTTIVGSIGVIMQGLNYEGLLDKLGVKIDTIRAGEYKDAGSLFRPLT 81 (154) T ss_pred CCCCCCCEEEEECCHHHHHHHHHHHHCCEEEECCCCEEEEEEEEECHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCC T ss_conf 75589979999788457799999986698998799747467324011528799986487644663265455557567799 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCCC Q ss_conf 999887777766666778999985149998899887349823788998779806238989999999974187 Q gi|254780747|r 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVD 243 (293) Q Consensus 172 ~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~~~ 243 (293) T Consensus 82 ~e~r~~~~~~l~~~~~~F~~~Va~~R~~~~~~~~~~~~g~v~~g~~A~~~GLvD~ig~~deai~~l~~~~g~ 153 (154) T pfam01343 82 PEEREALQRMLDETYQMFVQKVAKNRNLTVDQVDKIAEGRVWTGQQAVEAGLVDELGTLDDAIARLAELAGV 153 (154) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCCC T ss_conf 999999999999999999999998669998999998679987799999879967379999999999998099 |
|
| >PRK08788 enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.8e-05 Score=54.34 Aligned_cols=94 Identities=18% Similarity=0.301 Sum_probs=61.3 Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHH Q ss_conf 47867996033233223210001110001301353455565302102456777420422553155211234666789999 Q gi|254780747|r 95 NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKA 174 (293) Q Consensus 95 ~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~ 174 (293) T Consensus 119 ~p~~tIAaV~G~a~GGG~elalacD~~IA~~~A~fg~pEv~------------lGl~P---------g~-------Gg-- 168 (286) T PRK08788 119 AGAISIALVQGNALGGGFEAALSHHTIIAEEGVKMGFPEIL------------FNLFP---------GM-------GA-- 168 (286) T ss_pred CCCCEEEEECCEECHHHHHHHHHCCEEEECCCCEEECCCCC------------CCCCC---------CC-------HH-- T ss_conf 99846999847312577999997898997399886363013------------48687---------86-------07-- Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHH Q ss_conf 8877777666667789999851499988-998873498237889987798062389899999 Q gi|254780747|r 175 VQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235 (293) Q Consensus 175 ~~~~~~~l~~~~~~f~~~Va~~R~~~~~-~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~ 235 (293) T Consensus 169 -----------~~~L~R------~iG~~~A~emiltG~~~sAeeA~~~GLVd~vvp~g~~~~ 213 (286) T PRK08788 169 -----------YSFLAR------RIGPQLAEELILSGKLYSAEELHDMGLVDQLVERGQGYA 213 (286) T ss_pred -----------HHHHHH------HHCHHHHHHHHHHCCCCCHHHHHHCCCCCEEECCCCHHH T ss_conf -----------889998------869999999998299168999997699838528984899 |
|
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial; InterPro: IPR012803 Members of this family represent the alpha subunit of the mitochondrial multifunctional fatty acid degradation enzyme complex | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.1e-06 Score=60.31 Aligned_cols=96 Identities=16% Similarity=0.326 Sum_probs=76.6 Q ss_pred CCEEEEEEEEEEECCH--------HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHH------------------HHHH Q ss_conf 8728999976662386--------9999999998618998799997588888889999------------------9999 Q gi|254780747|r 35 SPHVARIAIRGQIEDS--------QELIERIERISRDDSATALIVSLSSPGGSAYAGE------------------AIFR 88 (293) Q Consensus 35 ~~~i~~i~i~G~I~~~--------~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~------------------~i~~ 88 (293) T Consensus 20 ~gdVaVvkid~PN~KvN~L~k~l~~Ef~~v~~~l~~~~~v~SaVliSgKPg~FvAGADI~Ml~Ac~T~~e~t~lS~eaQ~ 99 (740) T TIGR02441 20 KGDVAVVKIDSPNSKVNTLSKELSAEFKEVLNELWTNEAVKSAVLISGKPGSFVAGADIQMLAACKTAQEVTQLSQEAQE 99 (740) T ss_pred ECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 06779998778997301113789999999998730682524688974699870325626789872268999998677899 Q ss_pred HHHHH-CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHH--HHHH Q ss_conf 99984-147867996033233223210001110001301--3534 Q gi|254780747|r 89 AIQKV-KNRKPVITEVHEMAASAGYLISCASNIIVAAET--SLVG 130 (293) Q Consensus 89 ai~~~-k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~--s~vG 130 (293) T Consensus 100 ~~~r~E~S~KPiVAAI~GsClGGGLElAlaChYRIAtkD~KT~Lg 144 (740) T TIGR02441 100 MFERIEKSKKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLG 144 (740) T ss_pred HHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCCEEECCCCCCCC T ss_conf 999974289875875226310416899875044112236545346 |
Subunit activities include: enoyl-CoA hydratase (4.2.1.17 from EC) and 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC). Some characterization of these proteins has been done in human (P40939 from SWISSPROT), pig (Q29554 from SWISSPROT) and rat (Q64428 from SWISSPROT). The beta subunit has acetyl-CoA C-acyltransferase (2.3.1.16 from EC) activity.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0004300 enoyl-CoA hydratase activity, 0006635 fatty acid beta-oxidation, 0005739 mitochondrion, 0016507 fatty acid beta-oxidation multienzyme complex. |
| >PRK05617 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=7.6e-06 Score=56.75 Aligned_cols=102 Identities=17% Similarity=0.255 Sum_probs=73.1 Q ss_pred CCCEEEEEEEEEEEC-C------HHHHHHHHHHHHCCCCCCEEEEECCC-----CCCCHHHHH------------HH--- Q ss_conf 787289999766623-8------69999999998618998799997588-----888889999------------99--- Q gi|254780747|r 34 NSPHVARIAIRGQIE-D------SQELIERIERISRDDSATALIVSLSS-----PGGSAYAGE------------AI--- 86 (293) Q Consensus 34 ~~~~i~~i~i~G~I~-~------~~~l~~~l~~a~~d~~ik~ivL~i~S-----pGG~~~~~~------------~i--- 86 (293) T Consensus 14 ~~g~v~~itLNRP~~lNAl~~~m~~~l~~~l~~~~~d~~v~~vvl~g~G~kaFcAGgDi~~l~~~~~~~~~~~~~~ff~~ 93 (356) T PRK05617 14 VEGGAGVITLNRPKALNALSLEMIRAIDQALDAWEDDDAVAAVVLEGAGERAFCAGGDIRALYEAARAGDALARDRFFRE 93 (356) T ss_pred EECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEECCCHHHHHHHHHCCCHHHHHHHHHH T ss_conf 88999999967862036899999999999999986299823999973887716677548989753113686789999999 Q ss_pred -HHHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHH----HHHHH Q ss_conf -99999841-478679960332332232100011100013013534----55565 Q gi|254780747|r 87 -FRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG----SIGVL 135 (293) Q Consensus 87 -~~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vG----siGv~ 135 (293) T Consensus 94 ey~l~~~i~~~~KP~IA~i~G~~mGGG~~Lal~~d~RIate~t~famPE~~iGl~ 148 (356) T PRK05617 94 EYRLNARIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFF 148 (356) T ss_pred HHHHHHHHHHCCCCEEEEEECEEEECHHHHHHHCCEEEECCCCEEECCCCCCCCC T ss_conf 9999999997799989995162664489997608757852664351553244757 |
|
| >PRK07189 malonate decarboxylase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00082 Score=43.94 Aligned_cols=83 Identities=22% Similarity=0.250 Sum_probs=64.7 Q ss_pred HHHHHHHHHHHCCCC---CCEEEEECCCCCCC-------HHHHHHHHHHHHHHCCCCCEEEEECCC--CCCCCCCCCCCC Q ss_conf 999999999861899---87999975888888-------899999999999841478679960332--332232100011 Q gi|254780747|r 51 QELIERIERISRDDS---ATALIVSLSSPGGS-------AYAGEAIFRAIQKVKNRKPVITEVHEM--AASAGYLISCAS 118 (293) Q Consensus 51 ~~l~~~l~~a~~d~~---ik~ivL~i~SpGG~-------~~~~~~i~~ai~~~k~~kpvva~~~~~--~~S~~Y~iAs~a 118 (293) T Consensus 90 ~KI~~llelA~~~~~~~~~~pvV~~~esGG~RlqE~~~gL~a~aei~~a~~~lsg~VP~I~VI~G~~gCfGG~a~~aal~ 169 (302) T PRK07189 90 AKLAGLLELAAEDNRNGIPTAVLLLFETGGVRLQEANAGLAAIAEIMRAIVDLRAAVPVIGLIGGRVGCFGGMGIAAGLC 169 (302) T ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHC T ss_conf 99999999999817557888889996588888565530588999999999984689988999448765616888998728 Q ss_pred CCCCCCHHHHHHHHH Q ss_conf 100013013534555 Q gi|254780747|r 119 NIIVAAETSLVGSIG 133 (293) Q Consensus 119 d~I~a~p~s~vGsiG 133 (293) T Consensus 170 D~IImT~~arigm~G 184 (302) T PRK07189 170 SYLVVSEEGRLGLSG 184 (302) T ss_pred CEEEEECCCEEECCC T ss_conf 589982787561446 |
|
| >TIGR03133 malonate_beta malonate decarboxylase, beta subunit | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0023 Score=41.08 Aligned_cols=83 Identities=18% Similarity=0.240 Sum_probs=62.0 Q ss_pred HHHHHHHHHHHCCCC--CC-EEEEECCCCCC-------CHHHHHHHHHHHHHHCCCCCEEEEECCC--CCCCCCCCCCCC Q ss_conf 999999999861899--87-99997588888-------8899999999999841478679960332--332232100011 Q gi|254780747|r 51 QELIERIERISRDDS--AT-ALIVSLSSPGG-------SAYAGEAIFRAIQKVKNRKPVITEVHEM--AASAGYLISCAS 118 (293) Q Consensus 51 ~~l~~~l~~a~~d~~--ik-~ivL~i~SpGG-------~~~~~~~i~~ai~~~k~~kpvva~~~~~--~~S~~Y~iAs~a 118 (293) T Consensus 81 ~Ki~r~~e~A~e~~~~~~~~PvI~l~dSGGaRl~e~~~gl~~~~ei~~~~~~~sg~IPqIsvV~G~~~c~GG~a~~~~l~ 160 (274) T TIGR03133 81 AKIVGALRLAIEDNRKGQPTAVVLLLDTGGVRLQEANAGLIAIAEIMRAILDARAAVPVIGVIGGRVGCFGGMGIAAGLC 160 (274) T ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEECCCCC T ss_conf 99999999999807445787779996178876443320012389999999996699987999955455667707700237 Q ss_pred CCCCCCHHHHHHHHH Q ss_conf 100013013534555 Q gi|254780747|r 119 NIIVAAETSLVGSIG 133 (293) Q Consensus 119 d~I~a~p~s~vGsiG 133 (293) T Consensus 161 D~iIm~~~~~ifl~G 175 (274) T TIGR03133 161 SYLIMTEEGRLGLSG 175 (274) T ss_pred CEEEEECCCEEECCC T ss_conf 389997895795338 |
Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase. |
| >TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00051 Score=45.24 Aligned_cols=74 Identities=18% Similarity=0.342 Sum_probs=51.5 Q ss_pred HHHHHHHHHH-CCCCCCEEEEECCCC-----CC-------CHHH--------HHHHHHHHHHHC--CCCCEEEEECCCCC Q ss_conf 9999999986-189987999975888-----88-------8899--------999999999841--47867996033233 Q gi|254780747|r 52 ELIERIERIS-RDDSATALIVSLSSP-----GG-------SAYA--------GEAIFRAIQKVK--NRKPVITEVHEMAA 108 (293) Q Consensus 52 ~l~~~l~~a~-~d~~ik~ivL~i~Sp-----GG-------~~~~--------~~~i~~ai~~~k--~~kpvva~~~~~~~ 108 (293) T Consensus 52 el~da~~r~rfehp~v~~vv~~s~~~r~fcaGani~mL~~s~h~~kvnfckftnetrn~~edss~~sg~~~iaavnG~~a 131 (548) T TIGR03222 52 ELHDAVQRLRFEHPEVRTVVMTSGKDKVFCAGANIRMLGGSTHAHKVNFCKFTNETRNGIEDASEHSGQKFLAAINGTAA 131 (548) T ss_pred EHHHHHHHHHCCCCCEEEEEEECCCCCEEECCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC T ss_conf 48989988742388658999933887457457455766256537752476541134566777676329679998515124 Q ss_pred CCCCCCCCCCCCCCCCH Q ss_conf 22321000111000130 Q gi|254780747|r 109 SAGYLISCASNIIVAAE 125 (293) Q Consensus 109 S~~Y~iAs~ad~I~a~p 125 (293) T Consensus 132 GGGYELALAcd~I~lvD 148 (548) T TIGR03222 132 GGGYELALACDEIMLVD 148 (548) T ss_pred CCCEEEHHHCCEEEEEC T ss_conf 77210003256789970 |
In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH. |
| >TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0025 Score=40.91 Aligned_cols=97 Identities=22% Similarity=0.298 Sum_probs=68.7 Q ss_pred EEEEEEEEECC-------HHHHHHHHHHHHCCCCCCEEEEECCC-----CCCCHHHHH--------------HH-HHHHH Q ss_conf 99997666238-------69999999998618998799997588-----888889999--------------99-99999 Q gi|254780747|r 39 ARIAIRGQIED-------SQELIERIERISRDDSATALIVSLSS-----PGGSAYAGE--------------AI-FRAIQ 91 (293) Q Consensus 39 ~~i~i~G~I~~-------~~~l~~~l~~a~~d~~ik~ivL~i~S-----pGG~~~~~~--------------~i-~~ai~ 91 (293) T Consensus 39 AwITINRP~~yNAft~~tVkEli~AF~~A~~D~sVgvIVLTGaGDKAFCTGGDqke~ae~yag~p~e~~~~~~l~~~m~~ 118 (360) T TIGR03200 39 AWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMVS 118 (360) T ss_pred EEEEECCHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCEECCCCHHHHCCCCCCCCCHHHHHHHHHHHHHH T ss_conf 26783587770478889999999999972428852399995587611215876787545777885235778789999999 Q ss_pred HHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 841-47867996033233223210001110001301353455565 Q gi|254780747|r 92 KVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVL 135 (293) Q Consensus 92 ~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~ 135 (293) T Consensus 119 ~Ir~cpKPVIArVNG~AVGGG~eL~maCDLtIAsD~A~FGQ~GPK 163 (360) T TIGR03200 119 AILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPK 163 (360) T ss_pred HHHCCCCCEEEEECCEEECCCCEEEEEEHHHHHHHHHHHCCCCCC T ss_conf 985799876998715884387178876301345444454278888 |
Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >pfam00549 Ligase_CoA CoA-ligase | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.01 Score=37.06 Aligned_cols=72 Identities=15% Similarity=0.254 Sum_probs=56.3 Q ss_pred EEEEEEEEEECCHHHHHHHHHHHHCCCCCCEEEEECCCCCCC-HHHHHHHHHHHHHHCC-CCCEEEEECCCCCC Q ss_conf 899997666238699999999986189987999975888888-8999999999998414-78679960332332 Q gi|254780747|r 38 VARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGS-AYAGEAIFRAIQKVKN-RKPVITEVHEMAAS 109 (293) Q Consensus 38 i~~i~i~G~I~~~~~l~~~l~~a~~d~~ik~ivL~i~SpGG~-~~~~~~i~~ai~~~k~-~kpvva~~~~~~~S 109 (293) T Consensus 23 a~~ldiGGd~~~~~~~~e~l~~~~~Dp~tk~Ili~~~~G~g~~e~~A~~~v~a~~~~~~~~~PvVa~i~Gt~a~ 96 (128) T pfam00549 23 HNFIDLGGDAFTPTTRIDALKLEAADPEVKVILLDIVLGYGACEDPAGGLLKAIKEARARELPVVARVCGTEAD 96 (128) T ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC T ss_conf 25888379998633799999999578886299999877436269999999999998469987589999302699 |
This family includes the CoA ligases Succinyl-CoA synthetase alpha and beta chains, malate CoA ligase and ATP-citrate lyase. Some members of the family utilize ATP others use GTP. |
| >PRK08184 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0015 Score=42.33 Aligned_cols=73 Identities=18% Similarity=0.318 Sum_probs=51.3 Q ss_pred HHHHHHHHHHCCCCCCEEEEECCC------------CCCCHHH--------HHHHHHHHHHHC--CCCCEEEEECCCCCC Q ss_conf 999999998618998799997588------------8888899--------999999999841--478679960332332 Q gi|254780747|r 52 ELIERIERISRDDSATALIVSLSS------------PGGSAYA--------GEAIFRAIQKVK--NRKPVITEVHEMAAS 109 (293) Q Consensus 52 ~l~~~l~~a~~d~~ik~ivL~i~S------------pGG~~~~--------~~~i~~ai~~~k--~~kpvva~~~~~~~S 109 (293) T Consensus 67 Da~qR~R--Fehp~v~~vv~~s~k~rvFcaGANI~MLg~s~H~~kVNFCKfTNETRn~~Edss~~sg~~fiaavnG~~AG 144 (558) T PRK08184 67 DALQRIR--FEHPEVRTVVLTSAKDRVFCSGANIFMLGGSSHAWKVNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAG 144 (558) T ss_pred HHHHHHH--CCCCCEEEEEEECCCCCEEECCCCEEEECCCCCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCCC T ss_conf 7898864--13885379999438863464577624413566421432454144001214444323584787543353347 Q ss_pred CCCCCCCCCCCCCCCHH Q ss_conf 23210001110001301 Q gi|254780747|r 110 AGYLISCASNIIVAAET 126 (293) Q Consensus 110 ~~Y~iAs~ad~I~a~p~ 126 (293) T Consensus 145 GGYELALAcd~I~LvDD 161 (558) T PRK08184 145 GGYELALACDEIILVDD 161 (558) T ss_pred CCEEEEHHCCEEEEECC T ss_conf 84211021566899707 |
|
| >PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.011 Score=36.73 Aligned_cols=71 Identities=18% Similarity=0.337 Sum_probs=52.9 Q ss_pred CEEEEEEEEEEECCH-------------------------HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHH Q ss_conf 728999976662386-------------------------9999999998618998799997588888889999999999 Q gi|254780747|r 36 PHVARIAIRGQIEDS-------------------------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAI 90 (293) Q Consensus 36 ~~i~~i~i~G~I~~~-------------------------~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai 90 (293) T Consensus 162 G~VGivSRSGTLTyE~~~~lt~~G~GqSt~VgIGGDpi~Gt~f~d~L~~f~~D~~T~aIVl-iGEIGG~~E--e~aA~~I 238 (309) T PTZ00187 162 GKIGIVSRSGTLTYEAVAQTTAVGLGQSTCVGIGGDPFNGTNFIDCLKLFLNDPETEGIIL-IGEIGGTAE--EEAADWI 238 (309) T ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCEEEE-EECCCCHHH--HHHHHHH T ss_conf 8358994477528999999986698669999846987589789999999862957658999-816598699--9999999 Q ss_pred HHHCCCCCEEEEECCCCCC Q ss_conf 9841478679960332332 Q gi|254780747|r 91 QKVKNRKPVITEVHEMAAS 109 (293) Q Consensus 91 ~~~k~~kpvva~~~~~~~S 109 (293) T Consensus 239 k~~~~~KPVva~IAG~~AP 257 (309) T PTZ00187 239 KNNPTKKPVVSFIAGITAP 257 (309) T ss_pred HHCCCCCCEEEEEEECCCC T ss_conf 9669999889998125689 |
|
| >COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.033 Score=33.81 Aligned_cols=71 Identities=21% Similarity=0.338 Sum_probs=52.3 Q ss_pred CCEEEEEEEEEEECCH-------------------------HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH Q ss_conf 8728999976662386-------------------------999999999861899879999758888888999999999 Q gi|254780747|r 35 SPHVARIAIRGQIEDS-------------------------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA 89 (293) Q Consensus 35 ~~~i~~i~i~G~I~~~-------------------------~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~a 89 (293) T Consensus 145 ~G~IGiVSrSGTLTyE~~~qlt~~G~GqS~~IGiGGDpi~Gt~fid~L~~fe~Dp~T~~ivmi-GEiGG~aE--e~AA~~ 221 (293) T COG0074 145 PGNIGIVSRSGTLTYEAVSQLTEAGLGQSTAIGIGGDPIPGTSFIDALEMFEADPETEAIVMI-GEIGGPAE--EEAAEY 221 (293) T ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEEE-ECCCCCHH--HHHHHH T ss_conf 885699966866399999999763885589998578876881599999986458674079999-26799389--999999 Q ss_pred HHHHCCCCCEEEEECCCCC Q ss_conf 9984147867996033233 Q gi|254780747|r 90 IQKVKNRKPVITEVHEMAA 108 (293) Q Consensus 90 i~~~k~~kpvva~~~~~~~ 108 (293) T Consensus 222 i~~~~~~KPVVa~iaG~ta 240 (293) T COG0074 222 IKANATRKPVVAYIAGRTA 240 (293) T ss_pred HHHHCCCCCEEEEEECCCC T ss_conf 9963468986999843679 |
|
| >PRK05678 succinyl-CoA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.048 Score=32.81 Aligned_cols=71 Identities=21% Similarity=0.300 Sum_probs=50.3 Q ss_pred CCEEEEEEEEEEECCH-------------------------HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH Q ss_conf 8728999976662386-------------------------999999999861899879999758888888999999999 Q gi|254780747|r 35 SPHVARIAIRGQIEDS-------------------------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRA 89 (293) Q Consensus 35 ~~~i~~i~i~G~I~~~-------------------------~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~a 89 (293) T Consensus 145 pG~VgiiSrSGtLtye~~~~l~~~g~G~S~~VgiGgD~i~G~~f~d~L~~f~~Dp~T~~IvliGE-iGG~~E--~~aa~~ 221 (289) T PRK05678 145 KGRVGIVSRSGTLTYEAVAQLTDLGLGQSTCVGIGGDPINGTNFIDVLKAFEEDPETDAIVMIGE-IGGSAE--EEAAEW 221 (289) T ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEC-CCCHHH--HHHHHH T ss_conf 98689997776579999999997698669898527887678449999999742977327999975-598799--999999 Q ss_pred HHHHCCCCCEEEEECCCCCC Q ss_conf 99841478679960332332 Q gi|254780747|r 90 IQKVKNRKPVITEVHEMAAS 109 (293) Q Consensus 90 i~~~k~~kpvva~~~~~~~S 109 (293) T Consensus 222 i~~-~~~KPVva~iaG~~AP 240 (289) T PRK05678 222 IKA-NVTKPVVGYIAGVTAP 240 (289) T ss_pred HHH-CCCCCEEEEEECCCCC T ss_conf 985-5899679999514589 |
|
| >COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.15 Score=29.61 Aligned_cols=78 Identities=22% Similarity=0.319 Sum_probs=53.0 Q ss_pred EEEEEEEEEEC-CHHHHHHHHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHH-----------------H--CC- Q ss_conf 89999766623-8699999999986189987999975-8888888999999999998-----------------4--14- Q gi|254780747|r 38 VARIAIRGQIE-DSQELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQK-----------------V--KN- 95 (293) Q Consensus 38 i~~i~i~G~I~-~~~~l~~~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~-----------------~--k~- 95 (293) T Consensus 205 IGyI~I~~F~~~~~~~~~~al~~L~~~~-~~GlIlDLR~N~GG~L~~av~i~~~f~~~g~iv~~~~r~g~~~~~~~~~~~ 283 (406) T COG0793 205 IGYIRIPSFGEGTYEDLEKALDELKKQG-AKGLILDLRNNPGGLLSQAVKLAGLFLPSGPIVSTRGRNGKVNVYFSASGE 283 (406) T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCC T ss_conf 8999933246525899999999998658-858999967899854999999997157887579981688851024556545 Q ss_pred ---CCCEEEEECCCCCCCCCCCCC Q ss_conf ---786799603323322321000 Q gi|254780747|r 96 ---RKPVITEVHEMAASAGYLISC 116 (293) Q Consensus 96 ---~kpvva~~~~~~~S~~Y~iAs 116 (293) T Consensus 284 ~~~~~PlvvLvn~~SASAsEI~ag 307 (406) T COG0793 284 ALYDGPLVVLVNEGSASASEIFAG 307 (406) T ss_pred CCCCCCEEEEECCCCCCHHHHHHH T ss_conf 578999899988998579999999 |
|
| >TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.074 Score=31.61 Aligned_cols=78 Identities=19% Similarity=0.295 Sum_probs=53.7 Q ss_pred HHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHH----------HHHHHHHHC-CCCCEEEEECCCCCCCCCCC-CCCCCC Q ss_conf 999999986189987999975888888899999----------999999841-47867996033233223210-001110 Q gi|254780747|r 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEA----------IFRAIQKVK-NRKPVITEVHEMAASAGYLI-SCASNI 120 (293) Q Consensus 53 l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~----------i~~ai~~~k-~~kpvva~~~~~~~S~~Y~i-As~ad~ 120 (293) T Consensus 53 lA~~Vl~~i~~d~krPIv~lvD~~gq~~g~r~E~~Gi~~~~A~l~~~~~~Ar~~GHp~i~lv~g~a~sGafla~gl~a~~ 132 (238) T TIGR03134 53 LAQAVLDVIEADPKRPIVVLVDTPSQAYGRREELLGINQALAHLAKALALARLAGHPVIGLIYGKAISGAFLAHGLQADR 132 (238) T ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCC T ss_conf 99999999983899977999807775456047872399999999999999985499869999657344899986642061 Q ss_pred CCCCHHHHHH Q ss_conf 0013013534 Q gi|254780747|r 121 IVAAETSLVG 130 (293) Q Consensus 121 I~a~p~s~vG 130 (293) T Consensus 133 ~~Alp~a~i~ 142 (238) T TIGR03134 133 IIALPGAMVH 142 (238) T ss_pred HHCCCCCHHH T ss_conf 1127874353 |
Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity. |
| >pfam06833 MdcE Malonate decarboxylase gamma subunit (MdcE) | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.11 Score=30.56 Aligned_cols=78 Identities=15% Similarity=0.239 Sum_probs=54.1 Q ss_pred HHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHH----------HHHHHHHC-CCCCEEEEECCCCCCCCCCC-CCCCCC Q ss_conf 9999999861899879999758888888999999----------99999841-47867996033233223210-001110 Q gi|254780747|r 53 LIERIERISRDDSATALIVSLSSPGGSAYAGEAI----------FRAIQKVK-NRKPVITEVHEMAASAGYLI-SCASNI 120 (293) Q Consensus 53 l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i----------~~ai~~~k-~~kpvva~~~~~~~S~~Y~i-As~ad~ 120 (293) T Consensus 51 LA~~Vld~i~~~~~rpIl~lvD~~~Q~~~rrdEllGi~~~lAhla~~~~~AR~~GHpvI~Lv~g~a~sGaFla~gl~a~~ 130 (234) T pfam06833 51 LAAAVLEAIEQRDKRPILALVDTPSQALSRRDELLGINQALAHLAKAYDLARLAGHPVIGLLYGKAMSGAFLAHGLQANR 130 (234) T ss_pred HHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHCC T ss_conf 99999999971999877999807765433489984099999999999999997599769987544011899998876352 Q ss_pred CCCCHHHHHH Q ss_conf 0013013534 Q gi|254780747|r 121 IVAAETSLVG 130 (293) Q Consensus 121 I~a~p~s~vG 130 (293) T Consensus 131 ~~ALp~a~i~ 140 (234) T pfam06833 131 LIALPGAMVH 140 (234) T ss_pred HHCCCCCHHH T ss_conf 3117985031 |
This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase. |
| >pfam03572 Peptidase_S41 Peptidase family S41 | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.24 Score=28.45 Aligned_cols=81 Identities=26% Similarity=0.369 Sum_probs=53.6 Q ss_pred EEEEEEEEEECC-HHHHHHHHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHH---------------------- Q ss_conf 899997666238-699999999986189987999975-88888889999999999984---------------------- Q gi|254780747|r 38 VARIAIRGQIED-SQELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQKV---------------------- 93 (293) Q Consensus 38 i~~i~i~G~I~~-~~~l~~~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~~~---------------------- 93 (293) T Consensus 2 IgYi~i~sf~~~~~~~~~~~l~~l~~-~~~~~lIiDlR~N~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (166) T pfam03572 2 IGYLRIPSFSENTPEELAEALKELKK-KNVKGLILDLRGNPGGLLSAAVEIASLFLPDGTIVSTRDRIGDRPPNTTTQSS 80 (166) T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHH-CCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEECCC T ss_conf 89999674574349999999999987-79976999954799976899999997216889689996667875505740246 Q ss_pred ----CCCCCEEEEECCCCCCCCCCCCCCCC Q ss_conf ----14786799603323322321000111 Q gi|254780747|r 94 ----KNRKPVITEVHEMAASAGYLISCASN 119 (293) Q Consensus 94 ----k~~kpvva~~~~~~~S~~Y~iAs~ad 119 (293) T Consensus 81 ~~~~~~~~pv~vL~~~~t~SaaE~~a~~lk 110 (166) T pfam03572 81 GERYLTKKPLVVLVNEGTASASEIFAGALK 110 (166) T ss_pred CCCCCCCCCEEEEECCCCCCHHHHHHHHHH T ss_conf 866557899999989997538999986575 |
|
| >COG3904 Predicted periplasmic protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.55 Score=26.13 Aligned_cols=89 Identities=20% Similarity=0.158 Sum_probs=55.2 Q ss_pred EEEEEEEEEEECCHHH---HHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC Q ss_conf 2899997666238699---9999999861899879999758888888999999999998414786799603323322321 Q gi|254780747|r 37 HVARIAIRGQIEDSQE---LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYL 113 (293) Q Consensus 37 ~i~~i~i~G~I~~~~~---l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~ 113 (293) T Consensus 75 r~l~VvVse~~a~~da~sal~~lir~~G~y-~--~t~v~lnSpGGsv~kA~~mgkLiRe~--gfdt~v~s~A~CasaCpl 149 (245) T COG3904 75 RQLPVVVSEPGANVDAASALGRLIRKAGLY-I--ATGVTLNSPGGSVAKACSMGKLIRED--GFDTAVDSGAMCASACPL 149 (245) T ss_pred CEEEEEECCCCCCCCHHHHHHHHHHCCCCE-E--EEEEEECCCCCCHHHHHHHHHHHHHC--CCCCCCCCHHHHHCCCHH T ss_conf 535699737977834899999998556761-6--77778507998578887640144340--567224535555234526 Q ss_pred CCCCCCCCCCCHHHHHH Q ss_conf 00011100013013534 Q gi|254780747|r 114 ISCASNIIVAAETSLVG 130 (293) Q Consensus 114 iAs~ad~I~a~p~s~vG 130 (293) T Consensus 150 ~fagGvrRvve~~ayiG 166 (245) T COG3904 150 MFAGGVRRVVEDFAYIG 166 (245) T ss_pred HHHCCEEEEECCCCEEE T ss_conf 63125146612562355 |
|
| >TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain; InterPro: IPR014089 This group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which they have been characterised , , | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.27 Score=28.09 Aligned_cols=99 Identities=15% Similarity=0.257 Sum_probs=65.1 Q ss_pred CCEEEEEEEEEEECCH-----------------------HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHH Q ss_conf 8728999976662386-----------------------99999999986189987999975888888899999999999 Q gi|254780747|r 35 SPHVARIAIRGQIEDS-----------------------QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQ 91 (293) Q Consensus 35 ~~~i~~i~i~G~I~~~-----------------------~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~ 91 (293) T Consensus 153 ~G~Iaf~SQSGAl~~a~Ldwa~~~~vGfS~~VS~GNkAD~~e~Dlley~~~D~~T~~I~~Y~Eg~~----DG~~Fl~~A~ 228 (457) T TIGR02717 153 KGGIAFISQSGALLTALLDWAEKNGVGFSYFVSLGNKADIDESDLLEYLADDPDTKVILLYLEGIK----DGRKFLKTAK 228 (457) T ss_pred CCCEEEEEHHHHHHHHHHHHHHHCCCCEEEEEECCCCEECCHHHHHHHHHCCCCCCEEEEECCCCC----CHHHHHHHHH T ss_conf 887778971258999999999872781347782674111165778889853989408999717870----4168999988 Q ss_pred HHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHH Q ss_conf 84147867996033233223210001110001301353455565302102456777420 Q gi|254780747|r 92 KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGV 150 (293) Q Consensus 92 ~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi 150 (293) T Consensus 229 ~~s~~KPiv~lKsG~s~~GakAA~SH-------TGaLAGs~------~~y~aaf~q~G~ 274 (457) T TIGR02717 229 EISKKKPIVVLKSGTSEAGAKAASSH-------TGALAGSD------EAYDAAFKQAGV 274 (457) T ss_pred HHHHCCCEEEEECCCCHHHHHHHHHC-------CCHHHHHH------HHHHHHHCCCCE T ss_conf 86305988999368883456765210-------23133668------999987430143 |
In most species this protein is bifunctional, existing as fused alpha-beta domains. In Pyrococcus and related species, however, the domains exist as separate polypeptides. This entry represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. One of these (along with its beta-domain partner) was characterised as ACS-II showing specificity for phenylacetyl-CoA . This entry excludes non-ACS-I paralogs. . |
| >pfam01039 Carboxyl_trans Carboxyl transferase domain | Back alignment and domain information |
|---|
Probab=91.80 E-value=1 Score=24.43 Aligned_cols=81 Identities=20% Similarity=0.172 Sum_probs=57.3 Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCC-------HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCC Q ss_conf 99999999986189987999975888888-------89999999999984147867996033233223210001110001 Q gi|254780747|r 51 QELIERIERISRDDSATALIVSLSSPGGS-------AYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVA 123 (293) Q Consensus 51 ~~l~~~l~~a~~d~~ik~ivL~i~SpGG~-------~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~ad~I~a 123 (293) T Consensus 79 ~Ki~~~~e~A~~~-~lP-~v~l~dsgG~r~~eg~~~l~~~g~i~~~~~~~s~~iP~is~v~G~~~GggA~~~~~sd~~im 156 (487) T pfam01039 79 FKITRAMELAIKE-GEP-LIGINDSGGARIQEGVENLRGYGLIFGANSRASGVIPQISLVTGPCAGGGAYSPALGDFIIM 156 (487) T ss_pred HHHHHHHHHHHHC-CCC-EEEEEECCCEECCCCEECCCCCCHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCEEEE T ss_conf 4479999999985-995-89998242403476313045311799999997499988999537886368888760871588 Q ss_pred CHH-HHHHHHH Q ss_conf 301-3534555 Q gi|254780747|r 124 AET-SLVGSIG 133 (293) Q Consensus 124 ~p~-s~vGsiG 133 (293) T Consensus 157 ~~~~s~l~~aG 167 (487) T pfam01039 157 VKGTSPMFLTG 167 (487) T ss_pred ECCCCCEECCC T ss_conf 21764332248 |
All of the members in this family are biotin dependent carboxylases. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognized types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxoacid as the acceptor molecule of carbon dioxide. All of the members in this family utilize acyl-CoA as the acceptor molecule. |
| >pfam08496 Peptidase_S49_N Peptidase family S49 N-terminal | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.092 Score=31.04 Aligned_cols=23 Identities=13% Similarity=0.157 Sum_probs=8.6 Q ss_pred EEEEECCCCCCCHHHHHHHHHHHH Q ss_conf 999975888888899999999999 Q gi|254780747|r 68 ALIVSLSSPGGSAYAGEAIFRAIQ 91 (293) Q Consensus 68 ~ivL~i~SpGG~~~~~~~i~~ai~ 91 (293) T Consensus 99 vfVldF~G-Di~As~V~~LREEIt 121 (154) T pfam08496 99 LFVLDFKG-DIDASEVESLREEIT 121 (154) T ss_pred EEEEECCC-CCCHHHHHHHHHHHH T ss_conf 89995358-726676688999999 |
This domain is found to the N-terminus of bacterial signal peptidases of the S49 family (pfam01343). |
| >PRK11186 carboxy-terminal protease; Provisional | Back alignment and domain information |
|---|
Probab=92.95 E-value=0.65 Score=25.68 Aligned_cols=40 Identities=10% Similarity=0.389 Sum_probs=33.6 Q ss_pred HHHHHHHHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHH Q ss_conf 699999999986189987999975-88888889999999999 Q gi|254780747|r 50 SQELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAI 90 (293) Q Consensus 50 ~~~l~~~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai 90 (293) T Consensus 370 ~~dv~~~l~~Lk~-~~v~glIlDLRnNgGG~L~eAv~l~glF 410 (673) T PRK11186 370 TDDVKKQLQKLEK-QNVEGIIIDLRGNGGGALTEAVSLSGLF 410 (673) T ss_pred HHHHHHHHHHHHH-CCCCEEEEECCCCCCCCHHHHHHHHHHC T ss_conf 7899999999986-6997699980579984389999999733 |
|
| >smart00245 TSPc tail specific protease | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.57 Score=26.07 Aligned_cols=55 Identities=20% Similarity=0.265 Sum_probs=38.5 Q ss_pred CEEEEEEEEEEECC-HHHHHHHHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHH Q ss_conf 72899997666238-699999999986189987999975-888888899999999999 Q gi|254780747|r 36 PHVARIAIRGQIED-SQELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQ 91 (293) Q Consensus 36 ~~i~~i~i~G~I~~-~~~l~~~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~ 91 (293) T Consensus 28 ~~igYi~i~~F~~~~~~~~~~al~~l~-~~~~~~LIlDLR~N~GG~~~~a~~ia~~f~ 84 (192) T smart00245 28 GNIGYIRIPEFSEHTSNLVEKAWKKLE-KTNVEGLILDLRNNPGGLLSAAIDVSSLFL 84 (192) T ss_pred CCEEEEEEEEECHHHHHHHHHHHHHHH-HCCCCEEEEEECCCCCCCHHHHHHHHHHHC T ss_conf 969999972507234999999999998-679968999957789987889999998633 |
tail specific protease |
| >pfam01740 STAS STAS domain | Back alignment and domain information |
|---|
Probab=93.07 E-value=0.73 Score=25.39 Aligned_cols=67 Identities=16% Similarity=0.331 Sum_probs=52.4 Q ss_pred CCCEEEEEEEEEEEC--CHHHHHHHHHHHHCCCCCCEEEEECCC-CCCCHHHHHHHHHHHHHHCCC-CCEE Q ss_conf 787289999766623--869999999998618998799997588-888889999999999984147-8679 Q gi|254780747|r 34 NSPHVARIAIRGQIE--DSQELIERIERISRDDSATALIVSLSS-PGGSAYAGEAIFRAIQKVKNR-KPVI 100 (293) Q Consensus 34 ~~~~i~~i~i~G~I~--~~~~l~~~l~~a~~d~~ik~ivL~i~S-pGG~~~~~~~i~~ai~~~k~~-kpvv 100 (293) T Consensus 6 ~~~gv~vi~l~G~Ld~~~a~~~~~~l~~~~~~~~~~~vvlD~~~v~~iDssgl~~l~~~~~~~~~~g~~l~ 76 (106) T pfam01740 6 EIPGILILRLDGPLDFANAEAFRERLLRAIEEGEIRHVILDLSGVPFIDSSGLGALLELYKELRRRGVELV 76 (106) T ss_pred EECCEEEEEEEEEEEHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEE T ss_conf 76999999967689788999999999999865899789999708988890299999999999997699099 |
The STAS (after Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C terminal region of Sulphate transporters and bacterial antisigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. |
| >cd07560 Peptidase_S41_CPP C-terminal processing peptidase; serine protease family S41 | Back alignment and domain information |
|---|
Probab=92.91 E-value=0.77 Score=25.24 Aligned_cols=54 Identities=22% Similarity=0.351 Sum_probs=42.8 Q ss_pred EEEEEEEEEEEC-CHHHHHHHHHHHHCCCCCCEEEEEC-CCCCCCHHHHHHHHHHHH Q ss_conf 289999766623-8699999999986189987999975-888888899999999999 Q gi|254780747|r 37 HVARIAIRGQIE-DSQELIERIERISRDDSATALIVSL-SSPGGSAYAGEAIFRAIQ 91 (293) Q Consensus 37 ~i~~i~i~G~I~-~~~~l~~~l~~a~~d~~ik~ivL~i-~SpGG~~~~~~~i~~ai~ 91 (293) T Consensus 49 ~IGyI~i~~F~~~t~~~~~~al~~l~~-~g~~glIlDLR~NpGG~l~~av~ia~~Fl 104 (211) T cd07560 49 PIGYIRITSFSENTAEELKKALKELKK-QGMKGLILDLRNNPGGLLDEAVEIADLFL 104 (211) T ss_pred CEEEEEEEEECCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCCHHHHHHHHHHHC T ss_conf 639999425565219999999999997-69967999878999815999999999864 |
The C-terminal processing peptidase (CPP, EC 3.4.21.102) also known as tail-specific protease (tsp), the photosystem II D1 C-terminal processing protease (D1P), and other related S41 protease family members are present in this CD. CPP is synthesized as a precursor form with a carboxyl-terminal extension. It specifically recognizes a C-terminal tripeptide, Xaa-Yaa-Zaa, in which Xaa is preferably Ala or Leu, Yaa is preferably Ala or Tyr and Zaa is preferably Ala, but then cleaves at a variable distance from the C-terminus. The C-terminal carboxylate group is essential, and proteins where this group is amidated are not substrates. This family of proteases contains the PDZ domain that promotes protein-protein interactions and is important for substrate recognition. The active site consists of a serine/lysine catalytic dyad. The bacterial CCP-1 is believed to be important for the degradation of incorrectl |
Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
| Identity | Alignment graph | Length | Definition | E-value |
| Target | 293 | putative protease IV transmembrane protein [Candidatus | ||
| 3bf0_A | 593 | Crystal Structure Of Escherichia Coli Signal Peptid | 3e-30 | |
| 3bez_A | 593 | Crystal Structure Of Escherichia Coli Signal Peptid | 5e-28 | |
| 3bf0_A | 593 | Crystal Structure Of Escherichia Coli Signal Peptid | 6e-16 | |
| 3bez_A | 593 | Crystal Structure Of Escherichia Coli Signal Peptid | 3e-15 |
| >gi|163311063|pdb|3BF0|A Chain A, Crystal Structure Of Escherichia Coli Signal Peptide Peptidase (Sppa), Native Crystals Length = 593 | Back alignment and structure |
Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats.
Identities = 72/271 (26%), Positives = 123/271 (45%), Gaps = 14/271 (5%)
Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
D + + G I D +E +I D A+++ ++SPGGS
Sbjct: 294 KTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 353
Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
A E I + + KPV+ + MAAS GY IS +N IVA ++L GSIG+
Sbjct: 354 VTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVI 413
Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
V+ LD +GV V +SP+ S + P+A MMQ +++ Y F+ LV+++R+
Sbjct: 414 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQLMMQLSIENGYKRFITLVADARH 472
Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
++ ++ G +WTG +AK GL+D +G ++ L ++ + +
Sbjct: 473 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 531
Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
+ + N+S S + +P Q + A
Sbjct: 532 FDKVMDNMSGS--VRAMLPDAFQAMLPAPLA 560
|
| >gi|163311059|pdb|3BEZ|A Chain A, Crystal Structure Of Escherichia Coli Signal Peptide Peptidase (Sppa), Semet Crystals Length = 593 | Back alignment and structure |
Score = 129 bits (323), Expect = 5e-28, Method: Composition-based stats.
Identities = 69/271 (25%), Positives = 117/271 (43%), Gaps = 14/271 (5%)
Query: 29 SHVEDNSPHVARIAIRGQIEDSQEL---------IERIERISRDDSATALIVSLSSPGGS 79
D + + G I D +E +I D A+++ ++SPGGS
Sbjct: 294 KTPADTGDSIGVVFANGAIXDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGS 353
Query: 80 AYAGEAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQY 138
A E I + + KPV+ AAS GY IS +N IVA ++L GSIG+
Sbjct: 354 VTASEVIRAELAAARAAGKPVVVSXGGXAASGGYWISTPANYIVANPSTLTGSIGIFGVI 413
Query: 139 PYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRN 198
V+ LD +GV V +SP+ S + P+A Q +++ Y F+ LV+++R+
Sbjct: 414 TTVENSLDSIGVHTDGVSTSPLADV-SITRALPPEAQLXXQLSIENGYKRFITLVADARH 472
Query: 199 IPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNY 258
++ ++ G +WTG +AK GL+D +G ++ L ++ + +
Sbjct: 473 STPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKV-KQWHLEYYVDEPTF 531
Query: 259 WFCDLKNLSISSLLEDTIPLMKQTKVQGLWA 289
+ N S S + +P Q + A
Sbjct: 532 FDKVXDNXSGS--VRAXLPDAFQAXLPAPLA 560
|
| >gi|163311063|pdb|3BF0|A Chain A, Crystal Structure Of Escherichia Coli Signal Peptide Peptidase (Sppa), Native Crystals Length = 593 | Back alignment and structure |
Score = 89.3 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 39/208 (18%), Positives = 83/208 (39%), Gaps = 11/208 (5%)
Query: 52 ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASA 110
+++ I + D + T +++ L + G + I +A+++ ++ + V E +
Sbjct: 74 DIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGENYSQG 133
Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--S 168
Y ++ +N I + +V G Y K LDKL VS + K+ PF
Sbjct: 134 QYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRD 193
Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT--------LVLSDGRIWTGAEAKK 220
+++P A + + + ++ V+ +R IP ++ L+ T A +
Sbjct: 194 DMSPAAREADSRWIGELWQNYLNTVAANRQIPAEQVFPGAQGLLEGLTKTGGDTAKYALE 253
Query: 221 VGLIDVVGGQEEVWQSLYALGVDQSIRK 248
L+D + E+ ++L K
Sbjct: 254 NKLVDALASSAEIEKALTKEFGWSKTDK 281
|
| >gi|163311059|pdb|3BEZ|A Chain A, Crystal Structure Of Escherichia Coli Signal Peptide Peptidase (Sppa), Semet Crystals Length = 593 | Back alignment and structure |
Score = 87.0 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 39/208 (18%), Positives = 81/208 (38%), Gaps = 11/208 (5%)
Query: 52 ELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASA 110
+++ I + D + T ++ L + G + I +A+++ ++ + V E +
Sbjct: 74 DIVNTIRQAKDDRNITGIVXDLKNFAGGDQPSXQYIGKALKEFRDSGKPVYAVGENYSQG 133
Query: 111 GYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPF--S 168
Y ++ +N I + +V G Y K LDKL VS + K+ PF
Sbjct: 134 QYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRD 193
Query: 169 EVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKT--------LVLSDGRIWTGAEAKK 220
+ +P A + + + ++ V+ +R IP ++ L+ T A +
Sbjct: 194 DXSPAAREADSRWIGELWQNYLNTVAANRQIPAEQVFPGAQGLLEGLTKTGGDTAKYALE 253
Query: 221 VGLIDVVGGQEEVWQSLYALGVDQSIRK 248
L+D + E+ ++L K
Sbjct: 254 NKLVDALASSAEIEKALTKEFGWSKTDK 281
|
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| Identity | Alignment graph | Length | Definition | E-value |
| Target | 293 | putative protease IV transmembrane protein [Candidatus | ||
| 3bf0_A | 593 | Protease 4; bacterial, hydrolase, inner membrane, membr | 1e-29 | |
| 3bf0_A | 593 | Protease 4; bacterial, hydrolase, inner membrane, membr | 4e-27 | |
| 3bpp_A | 230 | 1510-N membrane protease; specific for A stomatin homol | 1e-11 | |
| 1yg6_A | 193 | ATP-dependent CLP protease proteolytic subunit; endopep | 7e-07 | |
| 3moy_A | 263 | Probable enoyl-COA hydratase; ssgcid, seattle structura | 5e-06 | |
| 1tg6_A | 277 | Putative ATP-dependent CLP protease proteolytic subunit | 1e-04 | |
| 1y7o_A | 218 | ATP-dependent CLP protease proteolytic subunit; hydrola | 2e-04 | |
| 2cby_A | 208 | ATP-dependent CLP protease proteolytic subunit 1; serin | 5e-04 | |
| 3p2l_A | 201 | ATP-dependent CLP protease proteolytic subunit; structu | 4e-07 | |
| 2x58_A | 727 | Peroxisomal bifunctional enzyme; beta oxidation pathway | 1e-05 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); oxid | 2e-05 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 hete | 3e-04 | |
| 1mj3_A | 260 | Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; | 3e-04 | |
| 3myb_A | 286 | Enoyl-COA hydratase; ssgcid, struct genomics, seattle s | 0.001 | |
| 3p5m_A | 255 | Enoyl-COA hydratase/isomerase; seattle structural genom | 0.003 |
| >3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A Length = 593 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 1e-29
Identities = 70/259 (27%), Positives = 123/259 (47%), Gaps = 8/259 (3%)
Query: 34 NSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93
N + +G + +I D A+++ ++SPGGS A E I +
Sbjct: 309 NGAIMDGEETQGNV-GGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAA 367
Query: 94 KNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
+ KPV+ + MAAS GY IS +N IVA ++L GSIG+ V+ LD +GV
Sbjct: 368 RAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHT 427
Query: 153 KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI 212
V +SP+ + S + P+A MMQ +++ Y F+ LV+++R+ ++ ++ G +
Sbjct: 428 DGVSTSPLA-DVSITRALPPEAQLMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHV 486
Query: 213 WTGAEAKKVGLIDVVGGQEEVWQSLYAL-GVDQSIRKIKDWNPPKNYW--FCDLKNLSIS 269
WTG +AK GL+D +G ++ L V Q ++ + ++ D + S+
Sbjct: 487 WTGQDAKANGLVDSLGDFDDAVAKAAELAKVKQ--WHLEYYVDEPTFFDKVMDNMSGSVR 544
Query: 270 SLLEDTIPLMKQTKVQGLW 288
++L D M + +
Sbjct: 545 AMLPDAFQAMLPAPLASVA 563
|
| >3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A Length = 593 | Back alignment and structure |
|---|
Score = 117 bits (293), Expect = 4e-27
Identities = 42/223 (18%), Positives = 90/223 (40%), Gaps = 14/223 (6%)
Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNR-KPVITEVHEMAA 108
+++ I + D + T +++ L + G + I +A+++ ++ KPV V E +
Sbjct: 73 FDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYA-VGENYS 131
Query: 109 SAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA--EPSP 166
Y ++ +N I + +V G Y K LDKL VS + K+ EP
Sbjct: 132 QGQYYLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFI 191
Query: 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDG--------RIWTGAEA 218
+++P A + + + ++ V+ +R IP ++ + G T A
Sbjct: 192 RDDMSPAAREADSRWIGELWQNYLNTVAANRQIPAEQVFPGAQGLLEGLTKTGGDTAKYA 251
Query: 219 KKVGLIDVVGGQEEVWQSLY-ALGVDQSIRKIKDWNPPKNYWF 260
+ L+D + E+ ++L G ++ + + +
Sbjct: 252 LENKLVDALASSAEIEKALTKEFGWSKTDKNYRAISYYDYALK 294
|
| >3bpp_A 1510-N membrane protease; specific for A stomatin homolog, archaea, thermostable, catalytic DYAD, hydrolase; 2.30A {Pyrococcus horikoshii} PDB: 2deo_A Length = 230 | Back alignment and structure |
|---|
Score = 65.4 bits (158), Expect = 1e-11
Identities = 40/201 (19%), Positives = 73/201 (36%), Gaps = 34/201 (16%)
Query: 35 SPHVARIAIRGQIEDSQ-ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKV 93
V I+GQI + +R I+ D+A A+I+ L +PGG A A I + IQ+
Sbjct: 7 KNIVYVAQIKGQITSYTYDQFDRYITIAEQDNAEAIIIELDTPGGRADAMMNIVQRIQQS 66
Query: 94 KNRKPVIT-EVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSI 152
K + AASAG I+ S++I A + +G+ + Y
Sbjct: 67 KIPVIIYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGYS------------- 113
Query: 153 KSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTL-VLSDGR 211
++ + + + +++ +++ ++
Sbjct: 114 ------------------QNGSIIEAPPAITNYFIAYIKSLAQESGRNATIAEEFITKDL 155
Query: 212 IWTGAEAKKVGLIDVVGGQEE 232
T EA K G+I+VV
Sbjct: 156 SLTPEEALKYGVIEVVARDIN 176
|
| >1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 1yg8_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A Length = 193 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 7e-07
Identities = 33/190 (17%), Positives = 70/190 (36%), Gaps = 33/190 (17%)
Query: 41 IAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP 98
I + GQ+ED + ++ ++ + ++ + + ++SPGG AG +I+ +Q +K
Sbjct: 29 IFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKP--D 86
Query: 99 VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158
V T AAS G + A + G F P S
Sbjct: 87 VSTICMGQAASMGAFLLTAG------------AKGKRFCLPN----------------SR 118
Query: 159 PMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAE 217
M +P + +++ + L++ ++ ++ + + E
Sbjct: 119 VMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPE 178
Query: 218 AKKVGLIDVV 227
A + GL+D +
Sbjct: 179 AVEYGLVDSI 188
|
| >3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis} Length = 263 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 5e-06
Identities = 37/229 (16%), Positives = 70/229 (30%), Gaps = 72/229 (31%)
Query: 31 VEDNSPHVARI---------AIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSAY 81
V I A+ + E+++ D A++V+ S +A
Sbjct: 13 TSRPVAGVGLIRLDRPDALNALNQTL--EAEVLDAARDFDADLEIGAIVVTGSERAFAAG 70
Query: 82 AGEAIFRAIQKVKN---------------RKPVITEVHEMAASAGYLISCASNIIVAAET 126
A A + + RKP++ V A G ++ ++++AA+T
Sbjct: 71 ADIAEMVTLTPHQARERNLLSGWDSLTQVRKPIVAAVAGYALGGGCELAMLCDLVIAADT 130
Query: 127 SLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSY 186
+ F P + LG+ P
Sbjct: 131 A-------RFGQPEI-----TLGIL------------PG-----------------LGGT 149
Query: 187 HWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQ 235
R V +++ L L+ GR T EA++VGL+ + ++
Sbjct: 150 QRLTRAVGKAK----AMDLCLT-GRSLTAEEAERVGLVSRIVPAADLLD 193
|
| >1tg6_A Putative ATP-dependent CLP protease proteolytic subunit; mitochondrial CLPP, CLP/HSP 100, X-RAY crystallography, ATP- dependent protease; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1 Length = 277 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 1e-04
Identities = 34/190 (17%), Positives = 71/190 (37%), Gaps = 33/190 (17%)
Query: 41 IAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP 98
+ + G I+D + +I ++ + + + + + ++SPGG AG AI+ +Q + N P
Sbjct: 85 VCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPGGVVTAGLAIYDTMQYILN--P 142
Query: 99 VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158
+ T AAS G L+ A G+ G+ P S
Sbjct: 143 ICTWCVGQAASMGSLLLAA------------GTPGMRHSLPN----------------SR 174
Query: 159 PMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAE 217
M +PS + + + + + + ++ + + + E
Sbjct: 175 IMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPME 234
Query: 218 AKKVGLIDVV 227
A++ G++D V
Sbjct: 235 AQEFGILDKV 244
|
| >1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1 Length = 218 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 2e-04
Identities = 38/190 (20%), Positives = 72/190 (37%), Gaps = 31/190 (16%)
Query: 41 IAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP 98
I + G +ED + +I ++ + DS + + +++PGGS AG AI + +K
Sbjct: 48 IMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFIKA--D 105
Query: 99 VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158
V T V MAAS G +I+ + G+ G F P + I
Sbjct: 106 VQTIVMGMAASMGTVIASS------------GAKGKRFMLPNAE-------YMIHQPMGG 146
Query: 159 PMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAE 217
+ P+ + ++ ++ +E+ +K ++ W + E
Sbjct: 147 TGGGTQQTDMAIAPEHLLKTRNTLEKIL-------AENSGQSMEKVHADAERDNWMSAQE 199
Query: 218 AKKVGLIDVV 227
+ G ID +
Sbjct: 200 TLEYGFIDEI 209
|
| >2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopeptidase, ATP-dependent protease, hydrolase; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A Length = 208 | Back alignment and structure |
|---|
Score = 40.4 bits (94), Expect = 5e-04
Identities = 38/190 (20%), Positives = 72/190 (37%), Gaps = 33/190 (17%)
Query: 41 IAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP 98
I + ++ D + L +I ++ +D++ + + ++SPGGS AG AI+ +
Sbjct: 30 IFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTMV--LAPCD 87
Query: 99 VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSS 158
+ T MAAS G + A G+ G + P+ +
Sbjct: 88 IATYAMGMAASMGEFLLAA------------GTKGKRYALPH----------------AR 119
Query: 159 PMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIW-TGAE 217
+ +P + + + + RL +E P ++ SD W T AE
Sbjct: 120 ILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAE 179
Query: 218 AKKVGLIDVV 227
A + G +D +
Sbjct: 180 ALEYGFVDHI 189
|
| >3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} Length = 201 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 4e-07
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 41 IAIRGQIED--SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP 98
+ + G++ D + +I ++ + +D + ++SPGG AG ++ +Q +K
Sbjct: 33 VFLNGEVNDHSANLVIAQLLFLESEDPDKDIYFYINSPGGMVTAGMGVYDTMQFIKP--D 90
Query: 99 VITEVHEMAASAGYLISCA 117
V T +AAS G L+
Sbjct: 91 VSTICIGLAASMGSLLLAG 109
|
| >2x58_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, lyase, isomerase, peroxisome; HET: ADP COA; 2.80A {Rattus norvegicus} Length = 727 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 1e-05
Identities = 15/107 (14%), Positives = 37/107 (34%), Gaps = 26/107 (24%)
Query: 51 QELIERIERISRDDSATALIVSLSSPGGS---------------AYAGEAIFRAIQKVKN 95
+E+ +++ D + A++ + G+ A ++ IQ+
Sbjct: 35 REVRNGLQKAGSDHTVKAIV--ICGANGNFCAGADIHGFSAFTPGLALGSLVDEIQRY-- 90
Query: 96 RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
+KPV+ + +A G ++ + +A + P V
Sbjct: 91 QKPVLAAIQGVALGGGLELALGCHYRIANAKA-------RVGLPEVT 130
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} Length = 725 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 2e-05
Identities = 13/112 (11%), Positives = 35/112 (31%), Gaps = 27/112 (24%)
Query: 51 QELIERIERISRDDSATALIVS---------------LSSPGGSAYAGEAIFRAIQKVKN 95
L E + A++++ G+ +A + +I + +
Sbjct: 37 YNLKSNYEEALSRNDVKAIVITGAKGRFSGGFDISGFGEMQKGNVKEPKAGYISIDIITD 96
Query: 96 R-----KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
KP + + +A G ++ A + ++A + P ++
Sbjct: 97 LLEAARKPSVAAIDGLALGGGLELAMACHARISAPAA-------QLGLPELQ 141
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* Length = 715 | Back alignment and structure |
|---|
Score = 41.1 bits (95), Expect = 3e-04
Identities = 21/140 (15%), Positives = 43/140 (30%), Gaps = 35/140 (25%)
Query: 31 VEDNSPHVARIAI--RGQ------IEDSQELIERIERISRDDSATALIVS---------- 72
V + + +G+ EL + ++ I D S +IVS
Sbjct: 10 VTALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGKDVFIVGA 69
Query: 73 -----LSSPGGSAYAGEAIFRAIQKVKNR-----KPVITEVHEMAASAGYLISCASNIIV 122
+ + A K+ + P + ++ +A G + A++ V
Sbjct: 70 DITEFVENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRV 129
Query: 123 AAETSLVGSIGVLFQYPYVK 142
A+++ P VK
Sbjct: 130 MADSA-------KIGLPEVK 142
|
| >1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A* Length = 260 | Back alignment and structure |
|---|
Score = 40.7 bits (95), Expect = 3e-04
Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 30/111 (27%)
Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAGE-------------------AIFRAIQ 91
+EL + +E D + A++ L+ + AG + + I
Sbjct: 37 EELNQALETFEEDPAVGAIV--LTGGEKAFAAGADIKEMQNRTFQDCYSGKFLSHWDHIT 94
Query: 92 KVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
++ +KPVI V+ A G ++ +II A E + F P +
Sbjct: 95 RI--KKPVIAAVNGYALGGGCELAMMCDIIYAGEKA-------QFGQPEIL 136
|
| >3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis} Length = 286 | Back alignment and structure |
|---|
Score = 38.7 bits (90), Expect = 0.001
Identities = 21/102 (20%), Positives = 36/102 (35%), Gaps = 18/102 (17%)
Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAY-------------AGEAIFRAIQKVKNR- 96
L E ++ D+S A++++ S A E +F V
Sbjct: 56 AALGEAFGTLAEDESVRAVVLAASGKAFCAGHDLKEMRAEPSREYYEKLFARCTDVMLAI 115
Query: 97 ----KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV 134
PVI VH +A +AG + ++ VA + G+
Sbjct: 116 QRLPAPVIARVHGIATAAGCQLVAMCDLAVATRDARFAVSGI 157
|
| >3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium} Length = 255 | Back alignment and structure |
|---|
Score = 37.6 bits (87), Expect = 0.003
Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 19/95 (20%)
Query: 51 QELIERIERISRDDSATALIVSLSSPGGSAYAG---------------EAIFRAIQKVKN 95
+EL I D+S A++ L+ G + +G + RAI +
Sbjct: 36 EELSVHIRDAEADESVRAVL--LTGAGRAFCSGGDLTGGDTAGAADAANRVVRAITSL-- 91
Query: 96 RKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130
KPVI VH A G ++ A +++VAA S
Sbjct: 92 PKPVIAGVHGAAVGFGCSLALACDLVVAAPASYFQ 126
|
Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
| Identity | Alignment graph | Length | Definition | Probability |
| Target | 293 | putative protease IV transmembrane protein [Candidatus | ||
| 3bf0_A | 593 | Protease 4; bacterial, hydrolase, inner membrane, membr | 100.0 | |
| 3bf0_A | 593 | Protease 4; bacteri |