Conserved Domains in CDD Database Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity Alignment graph Length
Definition
E-value
Target 107
hypothetical protein CLIBASIA_03260 [Candidatus Liberib
PRK00153 104
PRK00153, PRK00153, hypothetical protein; Validated
1e-24
COG0718 105
COG0718, COG0718, Uncharacterized protein conserved in
2e-17
TIGR00103 102
TIGR00103, DNA_YbaB_EbfC, DNA-binding protein, YbaB/Ebf
1e-12
PRK14625 109
PRK14625, PRK14625, hypothetical protein; Provisional
4e-11
PRK14626 110
PRK14626, PRK14626, hypothetical protein; Provisional
4e-11
PRK14624 115
PRK14624, PRK14624, hypothetical protein; Provisional
2e-10
PRK14621 111
PRK14621, PRK14621, hypothetical protein; Provisional
2e-09
PRK14627 100
PRK14627, PRK14627, hypothetical protein; Provisional
5e-09
PRK03762 103
PRK03762, PRK03762, hypothetical protein; Provisional
3e-08
PRK14622 103
PRK14622, PRK14622, hypothetical protein; Provisional
1e-06
PRK14628 118
PRK14628, PRK14628, hypothetical protein; Provisional
6e-06
PRK14623 106
PRK14623, PRK14623, hypothetical protein; Provisional
3e-04
pfam02575 92
pfam02575, DUF149, Uncharacterized BCR, YbaB family COG
1e-20
>gnl|CDD|178904 PRK00153, PRK00153, hypothetical protein; Validated
Back Show alignment and domain information
Score = 106 bits (267), Expect = 1e-24
Identities = 44/101 (43%), Positives = 68/101 (67%)
Query: 1 MSNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLF 60
M N+ ++ Q +++Q KM+KM+E + +E EG AGGG+V V + GK + VKID SL+
Sbjct: 2 MGNMQNLMKQAQQMQEKMQKMQEELAQMEVEGEAGGGLVKVTMTGKKEVKRVKIDPSLVD 61
Query: 61 EDNVEILEDLIIAAHSDAHKKIEDLVATKTQEITEGLPIPP 101
++VE+LEDLI+AA +DA +K E+ + K ++T GL P
Sbjct: 62 PEDVEMLEDLILAAFNDALRKAEETMKEKMGKLTGGLLPPG 102
>gnl|CDD|31062 COG0718, COG0718, Uncharacterized protein conserved in bacteria [Function unknown]
Back Show alignment and domain information
Score = 83.0 bits (205), Expect = 2e-17
Identities = 47/104 (45%), Positives = 70/104 (67%), Gaps = 2/104 (1%)
Query: 1 MSNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLF 60
M ++ K++ Q +++Q KM+KM+E + E G AGGG+V+V INGK + V+ID SLL
Sbjct: 4 MMDMQKLMKQAQQMQKKMQKMQEELAQKEVTGKAGGGLVTVTINGKGEVKSVEIDPSLLD 63
Query: 61 EDNVEILEDLIIAAHSDAHKKIEDLVATKTQEITEGLPIPPGLK 104
++ E+LEDLI+AA +DA KK+E+ K +T G+ PPG K
Sbjct: 64 PEDKEMLEDLILAAFNDAKKKVEETRKEKMGALTGGM--PPGFK 105
>gnl|CDD|161709 TIGR00103, DNA_YbaB_EbfC, DNA-binding protein, YbaB/EbfC family
Back Show alignment and domain information
Score = 66.3 bits (162), Expect = 1e-12
Identities = 44/103 (42%), Positives = 66/103 (64%), Gaps = 4/103 (3%)
Query: 1 MSNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLF 60
N+ +++ Q +++Q KM+K++E I E G +G G+V+V ING L ++ID SLL
Sbjct: 4 KGNLGELMKQAQQMQEKMKKLQEEIAQFEVTGKSGAGLVTVTINGNLELKSIEIDPSLLE 63
Query: 61 EDNVEILEDLIIAAHSDAHKKIEDLVATKTQEITEGLPIPPGL 103
ED E LED+I A +DA KK+E T + +T G+P+PPGL
Sbjct: 64 EDK-EALEDMITEALNDAVKKVE---ETYKELMTSGMPLPPGL 102
The function of this protein is unknown, but it has been expressed and crystallized. Its gene nearly always occurs next to recR and/or dnaX. It is restricted to Bacteria and the plant Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A member is present even in the minimal gene complement of Mycoplasm genitalium. Length = 102
>gnl|CDD|184772 PRK14625, PRK14625, hypothetical protein; Provisional
Back Show alignment and domain information
Score = 61.9 bits (150), Expect = 4e-11
Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 4/109 (3%)
Query: 1 MSNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLF 60
M ++ ++ Q + +Q K+ + + EG +GGGMV+V + G L V +D SL+
Sbjct: 1 MKDLGGLMKQAQAMQQKLADAQARLAETTVEGTSGGGMVTVTLMGNGELVRVLMDESLVQ 60
Query: 61 EDNVEILEDLIIAAHSDAHKKIEDLVATKTQE----ITEGLPIPPGLKF 105
E++ DLI+AAH+DA KK++ A QE + + PG+KF
Sbjct: 61 PGEGEVIADLIVAAHADAKKKLDAKQAQLMQEAAGPMAGLMGGLPGMKF 109
>gnl|CDD|173089 PRK14626, PRK14626, hypothetical protein; Provisional
Back Show alignment and domain information
Score = 61.8 bits (150), Expect = 4e-11
Identities = 36/96 (37%), Positives = 59/96 (61%), Gaps = 1/96 (1%)
Query: 3 NIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLFED 62
N+ +++ Q + I+ +EK KE + E GGGMV V NG + V+ID+SLL ED
Sbjct: 6 NLAELMKQMQSIKENVEKAKEELKKEEIVVEVGGGMVKVVSNGLGEIKDVEIDKSLLNED 65
Query: 63 NVEILEDLIIAAHSDAHKKIEDLVATKTQEITEGLP 98
E+L+DL+IAA ++A ++ ++++ K + GLP
Sbjct: 66 EYEVLKDLLIAAFNEASRRSKEVMGEKMTQAA-GLP 100
>gnl|CDD|173087 PRK14624, PRK14624, hypothetical protein; Provisional
Back Show alignment and domain information
Score = 59.2 bits (143), Expect = 2e-10
Identities = 37/97 (38%), Positives = 60/97 (61%), Gaps = 3/97 (3%)
Query: 1 MSNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLF 60
MS + +G +E KME++K+ I S+ G+AG GMV+V G+ +T V I++ L
Sbjct: 8 MSEALSNMGNIRE---KMEEVKKRIASIRVVGDAGAGMVTVTATGEGQITNVFINKQLFD 64
Query: 61 EDNVEILEDLIIAAHSDAHKKIEDLVATKTQEITEGL 97
D+ ++LEDL++AA +DA KK ++ A + Q + GL
Sbjct: 65 ADDNKMLEDLVMAATNDALKKAKEATAYEFQNASGGL 101
>gnl|CDD|173084 PRK14621, PRK14621, hypothetical protein; Provisional
Back Show alignment and domain information
Score = 56.0 bits (135), Expect = 2e-09
Identities = 31/97 (31%), Positives = 57/97 (58%), Gaps = 2/97 (2%)
Query: 1 MSNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLF 60
M N+ M+ Q ++ KM+ +++ + L A G AGGGMV +NGK L + ID ++
Sbjct: 3 MPNLGDMMKQIQQAGEKMQDVQKQLEKLVAHGEAGGGMVKASVNGKQKLLSLAIDPEIM- 61
Query: 61 EDNVEILEDLIIAAHSDAHKKIEDLVATKTQEITEGL 97
D+VE+++DL++AA + A ++ L + ++ G+
Sbjct: 62 -DDVEMVQDLVVAAVNSALEESAKLAQEEISKVAGGM 97
>gnl|CDD|173090 PRK14627, PRK14627, hypothetical protein; Provisional
Back Show alignment and domain information
Score = 54.8 bits (131), Expect = 5e-09
Identities = 30/95 (31%), Positives = 60/95 (63%)
Query: 3 NIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLFED 62
N +++ +++Q +M+K++E + + EG AGGG ++V++NG + + I ++ D
Sbjct: 2 NQRQLMQMAQQMQRQMQKVQEELAATIVEGTAGGGAITVKMNGHREVQSITISPEVVDPD 61
Query: 63 NVEILEDLIIAAHSDAHKKIEDLVATKTQEITEGL 97
+VE+L+DL++ A +DA +K + L + Q +T GL
Sbjct: 62 DVEMLQDLLLVAINDASRKAQQLAEERMQPLTGGL 96
>gnl|CDD|179646 PRK03762, PRK03762, hypothetical protein; Provisional
Back Show alignment and domain information
Score = 52.0 bits (125), Expect = 3e-08
Identities = 29/84 (34%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 1 MSNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLF 60
+ K+ +++Q K ++++E + E +GGG+VSV NGK + + ID SLL
Sbjct: 4 NMDFSKLGEMLEQMQKKAKQLEEENANKEFTAKSGGGLVSVSANGKGEVIDISIDDSLL- 62
Query: 61 EDNVEILEDLIIAAHSDAHKKIED 84
ED E L+ L+I+A +D +K +E+
Sbjct: 63 EDK-ESLQILLISAINDVYKMVEE 85
>gnl|CDD|173085 PRK14622, PRK14622, hypothetical protein; Provisional
Back Show alignment and domain information
Score = 46.6 bits (110), Expect = 1e-06
Identities = 29/98 (29%), Positives = 52/98 (53%)
Query: 3 NIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLFED 62
+I ++ Q K+++ M KE + + E +GGG+V V +NGK +T + +D + +
Sbjct: 2 DIQYLMRQAKKLEKAMADAKEKLAEIAVEAESGGGLVKVAMNGKCEVTRLTVDPKAVDPN 61
Query: 63 NVEILEDLIIAAHSDAHKKIEDLVATKTQEITEGLPIP 100
+ +LEDL+ AA + A +K + T G+ IP
Sbjct: 62 DKAMLEDLVTAAVNAAVEKARTAADESMSKATGGIKIP 99
>gnl|CDD|173091 PRK14628, PRK14628, hypothetical protein; Provisional
Back Show alignment and domain information
Score = 44.6 bits (105), Expect = 6e-06
Identities = 29/103 (28%), Positives = 56/103 (54%), Gaps = 5/103 (4%)
Query: 1 MSNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLF 60
+ + KM +E+Q K+++++ES + +E E + GGG V + + ++ID L
Sbjct: 21 LKDFAKMQ---EELQKKIQELEESFSQIEVEASVGGGAVRIVATCDRRVKDIEIDEDLK- 76
Query: 61 EDNVEILEDLIIAAHSDAHKKIEDLVATKTQEITEGLPIPPGL 103
++ E L+DL+IA ++ +KIE + +IT+ IP +
Sbjct: 77 -EDFETLKDLLIAGMNEVMEKIEKRREEEMSKITQQFGIPGLM 118
>gnl|CDD|184771 PRK14623, PRK14623, hypothetical protein; Provisional
Back Show alignment and domain information
Score = 38.6 bits (90), Expect = 3e-04
Identities = 28/102 (27%), Positives = 54/102 (52%), Gaps = 3/102 (2%)
Query: 3 NIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLFED 62
++M M+G+ KE Q K+E K+ + ++ + + G++ V + + + ID LL ED
Sbjct: 2 DMMGMMGKLKEAQQKVEATKKRLDTVLIDEQSSDGLLKVTVTANREIKSISIDDELL-ED 60
Query: 63 NVEILEDLIIAAHSDAHKKIEDLVATKTQEIT-EGLPIPPGL 103
E LED ++ + A +K ++ + + EG+P PG+
Sbjct: 61 K-EQLEDYLVLTLNKAIEKATEINEAELGAVAKEGMPDIPGM 101
>gnl|CDD|145618 pfam02575, DUF149, Uncharacterized BCR, YbaB family COG0718
Back Show alignment and domain information
Score = 93.4 bits (233), Expect = 1e-20
Identities = 43/92 (46%), Positives = 62/92 (67%), Gaps = 1/92 (1%)
Query: 9 GQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLFEDNVEILE 68
Q +++Q KMEK +E + + E EG +GGG+V V +NGK + V+ID LL ED E+LE
Sbjct: 2 KQAQQMQEKMEKAQEELANKEVEGTSGGGLVKVTVNGKGEVKDVEIDPELLDED-KEMLE 60
Query: 69 DLIIAAHSDAHKKIEDLVATKTQEITEGLPIP 100
DLI+AA +DA KK E+L + ++T GL +P
Sbjct: 61 DLIVAAINDALKKAEELAKEEMGKLTGGLNLP 92
Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity Alignment graph Length
Definition
Probability
Target
107
hypothetical protein CLIBASIA_03260 [Candidatus Liberib
PRK00153 107
hypothetical protein; Validated
100.0
COG0718 105
Uncharacterized protein conserved in bacteria [Function
99.97
PRK03762 97
hypothetical protein; Provisional
99.96
PRK00587 99
hypothetical protein; Provisional
99.94
TIGR00103 112
TIGR00103 conserved hypothetical protein TIGR00103; Int
99.94
pfam02575 92
DUF149 Uncharacterized BCR, YbaB family COG0718.
99.92
PRK00587 99
hypothetical protein; Provisional
94.92
PRK00153 107
hypothetical protein; Validated
90.95
>PRK00153 hypothetical protein; Validated
Back Show alignment and domain information
Probab=100.00 E-value=1.8e-32 Score=228.11 Aligned_cols=105 Identities=43% Similarity=0.736 Sum_probs=103.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCEEEEEEECCCCEEEEEECHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 92179999999999999999999985308999976984999996483074688647882910068999999999999999
Q gi|254780763|r 1 MSNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLFEDNVEILEDLIIAAHSDAHK 80 (107)
Q Consensus 1 M~nm~~llkqaq~mq~~m~~~q~eL~~~~v~g~sg~g~V~V~~~G~~~i~~i~Id~~~l~~~d~e~Ledli~~A~N~A~~ 80 (107)
T Consensus 3 m~nm~~mmkqaq~mq~~~~~~q~el~~~~v~~~sg~glV~V~~nG~~~v~~i~Id~~ll~~~d~e~LedlI~~A~N~A~~ 82 (107)
T PRK00153 3 MGNMANLMKQAQQMQEKMQKMQEELANKEVTGTAGGGLVTVTMTGKKEVVRVKIDPSVVDPEDVEMLEDLVAAAFNDALR 82 (107)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEEEECCCEEEEEEECHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 43599999999999999999999983758999987985999995495699999888986941599999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 999999999999744899899999998
Q gi|254780763|r 81 KIEDLVATKTQEITEGLPIPPGLKFPF 107 (107)
Q Consensus 81 k~~~~~~~~m~~~tggl~lp~g~~lPf 107 (107)
T Consensus 83 ka~~~~~~~m~~~tgg~-~~PG~~-p~ 107 (107)
T PRK00153 83 KADETTQEKMGALTGGL-LPPGFK-PF 107 (107)
T ss_pred HHHHHHHHHHHHHHCCC-CCCCCC-CC
T ss_conf 99999999999984798-999999-98
>COG0718 Uncharacterized protein conserved in bacteria [Function unknown]
Back Show alignment and domain information
Probab=99.97 E-value=1.9e-29 Score=208.92 Aligned_cols=102 Identities=46% Similarity=0.734 Sum_probs=99.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCEEEEEEECCCCEEEEEECHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 92179999999999999999999985308999976984999996483074688647882910068999999999999999
Q gi|254780763|r 1 MSNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLFEDNVEILEDLIIAAHSDAHK 80 (107)
Q Consensus 1 M~nm~~llkqaq~mq~~m~~~q~eL~~~~v~g~sg~g~V~V~~~G~~~i~~i~Id~~~l~~~d~e~Ledli~~A~N~A~~ 80 (107)
T Consensus 4 ~~~~~~l~kqaqqmQ~~~~~~Q~ela~~ev~g~aggGlVtV~~~G~~ev~~v~Idp~l~dpeD~E~LeDLi~aA~ndA~~ 83 (105)
T COG0718 4 MMDMQKLMKQAQQMQKKMQKMQEELAQKEVTGKAGGGLVTVTINGKGEVKSVEIDPSLLDPEDKEMLEDLILAAFNDAKK 83 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCEEEEEEECCCCEEEEEECHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 13099999999999999999999998527765227847999994796478887287875964188999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 999999999999744899899999
Q gi|254780763|r 81 KIEDLVATKTQEITEGLPIPPGLK 104 (107)
Q Consensus 81 k~~~~~~~~m~~~tggl~lp~g~~ 104 (107)
T Consensus 84 kv~e~~~e~m~~~t~gm~-P-G~~ 105 (105)
T COG0718 84 KVEETRKEKMGALTGGMP-P-GFK 105 (105)
T ss_pred HHHHHHHHHHHHHHCCCC-C-CCC
T ss_conf 999999999998645489-9-999
>PRK03762 hypothetical protein; Provisional
Back Show alignment and domain information
Probab=99.96 E-value=2.1e-28 Score=202.23 Aligned_cols=94 Identities=31% Similarity=0.453 Sum_probs=92.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCEEEEEEECCCCEEEEEECHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 17999999999999999999998530899997698499999648307468864788291006899999999999999999
Q gi|254780763|r 3 NIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLFEDNVEILEDLIIAAHSDAHKKI 82 (107)
Q Consensus 3 nm~~llkqaq~mq~~m~~~q~eL~~~~v~g~sg~g~V~V~~~G~~~i~~i~Id~~~l~~~d~e~Ledli~~A~N~A~~k~ 82 (107)
T Consensus 2 d~~~mmkqaq~mQ~km~~~Qeel~~~~v~g~sGGGlVkV~~nGk~ev~~i~IDp~l~--eD~emLeDLI~aA~NdA~~k~ 79 (97)
T PRK03762 2 DFSKMGEMLEQMQEKAKQLEEENANTEFTAKSGGGLVSVSANGKGEIIDISIDDSLL--EDKESLQILLISAINDVLKMV 79 (97)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEEEECCCEEEEEEECHHHC--CCHHHHHHHHHHHHHHHHHHH
T ss_conf 889999999999999999999984879999974967999995573089999887880--768799999999999999999
Q ss_pred HHHHHHHHHHHHCCCC
Q ss_conf 9999999999744899
Q gi|254780763|r 83 EDLVATKTQEITEGLP 98 (107)
Q Consensus 83 ~~~~~~~m~~~tggl~ 98 (107)
T Consensus 80 ~~~~~~~m~~~tgGmg 95 (97)
T PRK03762 80 EENRKNLAFNMLGGFG 95 (97)
T ss_pred HHHHHHHHHHHHCCCC
T ss_conf 9999999998757788
>PRK00587 hypothetical protein; Provisional
Back Show alignment and domain information
Probab=99.94 E-value=2.6e-26 Score=188.90 Aligned_cols=98 Identities=18% Similarity=0.218 Sum_probs=93.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCEEEEEEECCCCEEEEEECHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 17999999999999999999998530899997698499999648307468864788291006899999999999999999
Q gi|254780763|r 3 NIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLFEDNVEILEDLIIAAHSDAHKKI 82 (107)
Q Consensus 3 nm~~llkqaq~mq~~m~~~q~eL~~~~v~g~sg~g~V~V~~~G~~~i~~i~Id~~~l~~~d~e~Ledli~~A~N~A~~k~ 82 (107)
T Consensus 2 Nm~~mmkQaqkMQ~~m~~~Qeel~~~~~~~s~-gG~V~v~~nG~~ei~~i~I~pe~VDPeD~EmLeDLi~aAvNeAl~~v 80 (99)
T PRK00587 2 NFQKLAQQLKKMQNTMEKKQKEFEEKEFDFDY-KKYILIKIKGNLNIEKIEINKELIDPEDKETLQDMLREAINEAISIT 80 (99)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEC-CCEEEEEEECCEEEEEEEECHHCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 88999999999999999999999737888855-98799999678469998727001694218899999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCC
Q ss_conf 999999999974489989999
Q gi|254780763|r 83 EDLVATKTQEITEGLPIPPGL 103 (107)
Q Consensus 83 ~~~~~~~m~~~tggl~lp~g~ 103 (107)
T Consensus 81 ~~~~~~~m~~~m~~~--tG~f 99 (99)
T PRK00587 81 CKERDAIMNSTIPKG--TGLF 99 (99)
T ss_pred HHHHHHHHHHHCCCC--CCCC
T ss_conf 999999998663788--8999
>TIGR00103 TIGR00103 conserved hypothetical protein TIGR00103; InterPro: IPR004401 The function of this protein is unknown
Back Show alignment and domain information
Probab=99.94 E-value=3e-26 Score=188.56 Aligned_cols=101 Identities=43% Similarity=0.656 Sum_probs=99.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCEEEEEEECCCCEEEEEECHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 17999999999999999999998530899997698499999648307468864788291006899999999999999999
Q gi|254780763|r 3 NIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLFEDNVEILEDLIIAAHSDAHKKI 82 (107)
Q Consensus 3 nm~~llkqaq~mq~~m~~~q~eL~~~~v~g~sg~g~V~V~~~G~~~i~~i~Id~~~l~~~d~e~Ledli~~A~N~A~~k~ 82 (107)
T Consensus 12 ~l~~~m~~a~~~q~~~~~l~eE~~~~~~~gksG~GlV~v~~~G~~~~~~~~Id~~l~d~~D~~~Le~~i~~A~NdA~~~v 91 (112)
T TIGR00103 12 NLGELMKQAQKVQEKMKKLQEEIAKLEVTGKSGAGLVTVTINGNLELKSIEIDPSLLDPEDKEALEDLITEALNDAVKKV 91 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCEEEEEEECCCCCEEEECCHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 79999999999999899999888721316423773578886368652021035533286664889999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCC
Q ss_conf 999999999974489989999
Q gi|254780763|r 83 EDLVATKTQEITEGLPIPPGL 103 (107)
Q Consensus 83 ~~~~~~~m~~~tggl~lp~g~ 103 (107)
T Consensus 92 ~e~~~~kM~~~~~~l~~~PGl 112 (112)
T TIGR00103 92 KEKYKEKMALVTKGLPLVPGL 112 (112)
T ss_pred HHHHHHHHHHHHHHCCCCCCC
T ss_conf 999988899999752789899
It is restricted to bacteria and a few plants, such as Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A crystal structure of one member, YbaB from Haemophilus influenzae, revealed a core structure consisting of two layers, alpha/beta; YbaB forms a tight dimer with a 3-layer structure, beta/alpha/beta . YbaB is co-transcribed with recR, which appears to protect DNA strands of the replilcation fork when it is blocked by DNA damage. A deletion of the YbaB operon resulted in increased sensitivity to DNA-damaging agents compared with the wild-type strain..
>pfam02575 DUF149 Uncharacterized BCR, YbaB family COG0718
Back Show alignment and domain information
Probab=99.92 E-value=2.3e-24 Score=176.58 Aligned_cols=92 Identities=45% Similarity=0.688 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHEEEEEEECCCEEEEEEECCCCEEEEEECHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999853089999769849999964830746886478829100689999999999999999999999
Q gi|254780763|r 8 VGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLFEDNVEILEDLIIAAHSDAHKKIEDLVA 87 (107)
Q Consensus 8 lkqaq~mq~~m~~~q~eL~~~~v~g~sg~g~V~V~~~G~~~i~~i~Id~~~l~~~d~e~Ledli~~A~N~A~~k~~~~~~ 87 (107)
T Consensus 1 ~~qaq~mq~~~~~~q~el~~~~~~~~s~~g~V~v~~~G~~~v~~i~Id~~l~~-~d~e~Ledli~~A~n~A~~~a~~~~~ 79 (92)
T pfam02575 1 MKQAQQMQEKMEKAQEELANKEVEGTSGGGLVKVTVNGKGEVKDVEIDPELLD-EDKEMLEDLIVAAINDALKKAEELAK 79 (92)
T ss_pred CHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEEECCCCEEEEEEECHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 95899999999999999727499999889839999826847999999889963-88999999999999999999999999
Q ss_pred HHHHHHHCCCCCC
Q ss_conf 9999974489989
Q gi|254780763|r 88 TKTQEITEGLPIP 100 (107)
Q Consensus 88 ~~m~~~tggl~lp 100 (107)
T Consensus 80 ~~m~~~~gg~~~p 92 (92)
T pfam02575 80 EEMGKLTGGLNLP 92 (92)
T ss_pred HHHHHHHCCCCCC
T ss_conf 9999983699999
>PRK00587 hypothetical protein; Provisional
Back Show alignment and domain information
Probab=94.92 E-value=0.28 Score=30.14 Aligned_cols=90 Identities=14% Similarity=0.145 Sum_probs=57.2
Q ss_pred CCCHHHHHHHHH----HHHHHHHHHHHHHH---HEEEEEEECCCEEEEEEECCCCEEEEEECHHHCCCCHHHHHHHHHHH
Q ss_conf 921799999999----99999999999985---30899997698499999648307468864788291006899999999
Q gi|254780763|r 1 MSNIMKMVGQFK----EIQGKMEKMKESIT---SLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLFEDNVEILEDLIIA 73 (107)
Q Consensus 1 M~nm~~llkqaq----~mq~~m~~~q~eL~---~~~v~g~sg~g~V~V~~~G~~~i~~i~Id~~~l~~~d~e~Ledli~~ 73 (107)
T Consensus 3 m~~mmkQaqkMQ~~m~~~Qeel~~~--~~~~s~gG~V~v~~nG~~ei~~i~I~pe~VDPe-D~EmL----eDLi~aAvNe 75 (99)
T PRK00587 3 FQKLAQQLKKMQNTMEKKQKEFEEK--EFDFDYKKYILIKIKGNLNIEKIEINKELIDPE-DKETL----QDMLREAINE 75 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC--EEEEECCCEEEEEEECCEEEEEEEECHHCCCCC-CHHHH----HHHHHHHHHH
T ss_conf 8999999999999999999999737--888855987999996784699987270016942-18899----9999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 999999999999999999974489
Q gi|254780763|r 74 AHSDAHKKIEDLVATKTQEITEGL 97 (107)
Q Consensus 74 A~N~A~~k~~~~~~~~m~~~tggl 97 (107)
T Consensus 76 Al~~v~~~~~~~m~~~m~~~tG~f 99 (99)
T PRK00587 76 AISITCKERDAIMNSTIPKGTGLF 99 (99)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 999999999999986637888999
>PRK00153 hypothetical protein; Validated
Back Show alignment and domain information
Probab=90.95 E-value=0.63 Score=27.87 Aligned_cols=93 Identities=15% Similarity=0.171 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHEEEEEEECCCEEEEEEECCCCEEEEEECHH--HCC-CCHHHHH----HHHHHHHHHHHHHH
Q ss_conf 9999999999999999853089999769849999964830746886478--829-1006899----99999999999999
Q gi|254780763|r 9 GQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRS--LLF-EDNVEIL----EDLIIAAHSDAHKK 81 (107)
Q Consensus 9 kqaq~mq~~m~~~q~eL~~~~v~g~sg~g~V~V~~~G~~~i~~i~Id~~--~l~-~~d~e~L----edli~~A~N~A~~k 81 (107)
T Consensus 4 ~nm~~mmkqaq~mq~~~~~~q~el~~----~~v~~~sg~glV~V~~nG~~~v~~i~Id~~ll~~~d~e~LedlI~~A~N~ 79 (107)
T PRK00153 4 GNMANLMKQAQQMQEKMQKMQEELAN----KEVTGTAGGGLVTVTMTGKKEVVRVKIDPSVVDPEDVEMLEDLVAAAFND 79 (107)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHC----CEEEEEECCCEEEEEEECCCEEEEEEECHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 35999999999999999999999837----58999987985999995495699999888986941599999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 99999999999744899899999998
Q gi|254780763|r 82 IEDLVATKTQEITEGLPIPPGLKFPF 107 (107)
Q Consensus 82 ~~~~~~~~m~~~tggl~lp~g~~lPf 107 (107)
T Consensus 80 A~~ka~~~~~~~m~~--~tgg~~~PG 103 (107)
T PRK00153 80 ALRKADETTQEKMGA--LTGGLLPPG 103 (107)
T ss_pred HHHHHHHHHHHHHHH--HHCCCCCCC
T ss_conf 999999999999999--847989999
Homologous Domains in SCOP and MMDB Database Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
Identity Alignment graph Length
Definition
E-value
Target
107
hypothetical protein CLIBASIA_03260 [Candidatus Liberib
d1j8ba_ 92
d.222.1.1 (A:) Hypothetical protein HI0442 {Haemophilus
1e-18
>d1j8ba_ d.222.1.1 (A:) Hypothetical protein HI0442 {Haemophilus influenzae [TaxId: 727]} Length = 92
Back Hide information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: YbaB-like
superfamily: YbaB-like
family: YbaB-like
domain: Hypothetical protein HI0442
species: Haemophilus influenzae [TaxId: 727]
Score = 85.5 bits (212), Expect = 1e-18
Identities = 39/96 (40%), Positives = 59/96 (61%), Gaps = 4/96 (4%)
Query: 1 MSNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLF 60
+ +MK Q +++Q KM+KM+E I LE G +G G+V + ING + + ID SL+
Sbjct: 1 LGGLMK---QAQQMQEKMQKMQEEIAQLEVTGESGAGLVKITINGAHNCRRIDIDPSLME 57
Query: 61 EDNVEILEDLIIAAHSDAHKKIEDLVATKTQEITEG 96
+D E+LEDLI AA +DA ++ E+L K +T G
Sbjct: 58 DD-KEMLEDLIAAAFNDAVRRAEELQKEKMASVTAG 92
Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
Identity Alignment graph Length
Definition
Probability
Target 107
hypothetical protein CLIBASIA_03260 [Candidatus Liberib
d1j8ba_ 92
Hypothetical protein HI0442 {Haemophilus influenzae [Ta
99.93
>d1j8ba_ d.222.1.1 (A:) Hypothetical protein HI0442 {Haemophilus influenzae [TaxId: 727]}
Back Hide information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: YbaB-like
superfamily: YbaB-like
family: YbaB-like
domain: Hypothetical protein HI0442
species: Haemophilus influenzae [TaxId: 727]
Probab=99.93 E-value=9e-26 Score=182.63 Aligned_cols=92 Identities=40% Similarity=0.621 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCEEEEEEECCCCEEEEEECHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79999999999999999999985308999976984999996483074688647882910068999999999999999999
Q gi|254780763|r 4 IMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLFEDNVEILEDLIIAAHSDAHKKIE 83 (107)
Q Consensus 4 m~~llkqaq~mq~~m~~~q~eL~~~~v~g~sg~g~V~V~~~G~~~i~~i~Id~~~l~~~d~e~Ledli~~A~N~A~~k~~ 83 (107)
|++||+|||+||++|+++|++|++.+|+|+||+|+|+|++||+++|++|+|||++++ +|+++|||||++|||+|+++++
T Consensus 1 m~~mmkqaq~mq~~m~~~q~eL~~~~v~~~sg~g~V~V~~~G~~~v~~i~Id~~~l~-~d~e~LedlI~~A~N~A~~k~~ 79 (92)
T d1j8ba_ 1 LGGLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKITINGAHNCRRIDIDPSLME-DDKEMLEDLIAAAFNDAVRRAE 79 (92)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHTTSEEEEEEGGGTEEEEEETTCCEEEEEECGGGGG-SCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCEEEEEEECCEEEEEEEECHHHHC-CCHHHHHHHHHHHHHHHHHHHH
T ss_conf 968999999999999999999747299999879879999988867999998878702-7599999999999999999999
Q ss_pred HHHHHHHHHHHCC
Q ss_conf 9999999997448
Q gi|254780763|r 84 DLVATKTQEITEG 96 (107)
Q Consensus 84 ~~~~~~m~~~tgg 96 (107)
+.++++|+++|||
T Consensus 80 ~~~~~~m~~~tGG 92 (92)
T d1j8ba_ 80 ELQKEKMASVTAG 92 (92)
T ss_dssp HHHHHHHHHHTCC
T ss_pred HHHHHHHHHHCCC
T ss_conf 9999998755399
Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
Identity Alignment graph Length
Definition
E-value
Target
107
hypothetical protein CLIBASIA_03260 [Candidatus Li
1ybx_A_ 143
(A:) Conserved hypothetical protein; structural ge
7e-23
1j8b_A_ 112
(A:) YBAB; hypothetical protein, structural genomi
3e-21
3f42_A_ 99
(A:) Protein HP0035; helicobacter pylori unknown-f
4e-20
>1ybx_A (A:) Conserved hypothetical protein; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MSE; 1.80A {Clostridium thermocellum}Length = 143
Back Hide alignment and structure
Score = 100 bits (251), Expect = 7e-23
Identities = 35/103 (33%), Positives = 59/103 (57%)
Query: 1 MSNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLF 60
NI +V Q ++ Q E+++E + E +AGGG V+V G+ + + I ++
Sbjct: 40 GGNINNLVKQAQKXQRDXERVQEELKEKTVEASAGGGAVTVVATGRKDIKEITIKPEVVD 99
Query: 61 EDNVEILEDLIIAAHSDAHKKIEDLVATKTQEITEGLPIPPGL 103
D+VE L+DLI+AA ++A +K ++ V + +IT GL PGL
Sbjct: 100 PDDVEXLQDLILAAVNEALRKADEXVTAEISKITGGLGGIPGL 142
>1j8b_A (A:) YBAB; hypothetical protein, structural genomics, structure 2 function project, S2F, unknown function; HET: MSE; 1.75A {Haemophilus influenzae rd KW20}Length = 112
Back Show alignment and structure
Score = 95.2 bits (237), Expect = 3e-21
Identities = 43/107 (40%), Positives = 61/107 (57%), Gaps = 1/107 (0%)
Query: 1 MSNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLF 60
+ + Q ++ Q K +K +E I LE G +G G+V + ING + + ID SL
Sbjct: 7 KGGLGGLXKQAQQXQEKXQKXQEEIAQLEVTGESGAGLVKITINGAHNCRRIDIDPSLXE 66
Query: 61 EDNVEILEDLIIAAHSDAHKKIEDLVATKTQEITEGLPIPPGLKFPF 107
+D E LEDLI AA +DA ++ E+L K +T G P+PPG KFPF
Sbjct: 67 DD-KEXLEDLIAAAFNDAVRRAEELQKEKXASVTAGXPLPPGXKFPF 112
>3f42_A (A:) Protein HP0035; helicobacter pylori unknown-function, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.78A {Helicobacter pylori}Length = 99
Back Show alignment and structure
Score = 91.6 bits (228), Expect = 4e-20
Identities = 21/98 (21%), Positives = 41/98 (41%), Gaps = 2/98 (2%)
Query: 1 MSNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLF 60
+ ++ G + + +++E +GGG VSV NG L ++ID SLL
Sbjct: 2 HXDFSQLGGLLDGXKKEFSQLEEKNKDTIHTSKSGGGXVSVSFNGLGELVDLQIDDSLL- 60
Query: 61 EDNVEILEDLIIAAHSDAHKKIEDLVATKTQEITEGLP 98
++ E + + +A +D +K +E+
Sbjct: 61 -EDKEAXQIYLXSALNDGYKAVEENRKNLAFNXLGNFA 97
Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
Identity Alignment graph Length
Definition
Probability
Target 107
hypothetical protein CLIBASIA_03260 [Candidatus Liberib
1j8b_A_ 112
YBAB; hypothetical protein, structural genomics, s
99.95
3f42_A_ 99
Protein HP0035; helicobacter pylori unknown-functi
99.94
1ybx_A_ 143
Conserved hypothetical protein; structural genomic
99.94
1ybx_A_ 143
Conserved hypothetical protein; structural genomic
91.73
1j8b_A_ 112
YBAB; hypothetical protein, structural genomics, s
90.7
>1j8b_A (A:) YBAB; hypothetical protein, structural genomics, structure 2 function project, S2F, unknown function; HET: MSE; 1.75A {Haemophilus influenzae rd KW20}
Back Hide alignment and structure
Probab=99.95 E-value=3.4e-27 Score=194.13 Aligned_cols=106 Identities=41% Similarity=0.662 Sum_probs=103.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCEEEEEEECCCCEEEEEECHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 92179999999999999999999985308999976984999996483074688647882910068999999999999999
Q gi|254780763|r 1 MSNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLFEDNVEILEDLIIAAHSDAHK 80 (107)
Q Consensus 1 M~nm~~llkqaq~mq~~m~~~q~eL~~~~v~g~sg~g~V~V~~~G~~~i~~i~Id~~~l~~~d~e~Ledli~~A~N~A~~ 80 (107)
|.|+++|+++||+||++++++|++|+..+|+++|++|+|+||+||+++|++|+|||+++. +|++.|+++|++|+|+|++
T Consensus 7 ~~n~~~m~~~aq~~q~~~~~~q~el~~~~~~~~s~dG~V~Vtv~g~g~v~~i~I~~~~~~-~d~e~L~~~i~~A~n~A~~ 85 (112)
T 1j8b_A 7 KGGLGGLXKQAQQXQEKXQKXQEEIAQLEVTGESGAGLVKITINGAHNCRRIDIDPSLXE-DDKEXLEDLIAAAFNDAVR 85 (112)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHHHTTSEEEEEEGGGTEEEEEETTCCEEEEEECGGGGG-SCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCEEEEEEECCCEEEEEEECHHHHC-CCHHHHHHHHHHHHHHHHH
T ss_conf 769999999999999999999999856099999779769999977827999998677714-7899999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 999999999999744899899999998
Q gi|254780763|r 81 KIEDLVATKTQEITEGLPIPPGLKFPF 107 (107)
Q Consensus 81 k~~~~~~~~m~~~tggl~lp~g~~lPf 107 (107)
++++..+++|.++|||+++|++.+|||
T Consensus 86 ~a~~~~~~~~~~l~g~~~lPg~~~~~~ 112 (112)
T 1j8b_A 86 RAEELQKEKXASVTAGXPLPPGXKFPF 112 (112)
T ss_dssp HHHHHHHHHHHHHTCC-----------
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 999999999999857999998999997
>3f42_A (A:) Protein HP0035; helicobacter pylori unknown-function, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.78A {Helicobacter pylori}
Back Show alignment and structure
Probab=99.94 E-value=3.1e-26 Score=188.05 Aligned_cols=98 Identities=22% Similarity=0.335 Sum_probs=94.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCEEEEEEECCCCEEEEEECHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 92179999999999999999999985308999976984999996483074688647882910068999999999999999
Q gi|254780763|r 1 MSNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLFEDNVEILEDLIIAAHSDAHK 80 (107)
Q Consensus 1 M~nm~~llkqaq~mq~~m~~~q~eL~~~~v~g~sg~g~V~V~~~G~~~i~~i~Id~~~l~~~d~e~Ledli~~A~N~A~~ 80 (107)
|+||++||+|||+||++++++|++|++.+|+|+|++|+|+||+||+++|++|+|||+++ +|+++|||+|++|||+|++
T Consensus 2 ~~n~~~mlkqaq~~q~~~~~~q~el~~~~~~g~s~~g~V~V~~~G~~~i~~i~Id~~~l--~d~e~Ledli~~A~N~A~~ 79 (99)
T 3f42_A 2 HXDFSQLGGLLDGXKKEFSQLEEKNKDTIHTSKSGGGXVSVSFNGLGELVDLQIDDSLL--EDKEAXQIYLXSALNDGYK 79 (99)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEGGGTEEEEEETTSCEEEEEECGGGG--GCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEEEECCCEEEEEEECHHHH--CCHHHHHHHHHHHHHHHHH
T ss_conf 98999999999999999999999984739999977988999998795499999897890--8899999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 99999999999974489989999
Q gi|254780763|r 81 KIEDLVATKTQEITEGLPIPPGL 103 (107)
Q Consensus 81 k~~~~~~~~m~~~tggl~lp~g~ 103 (107)
++++.++++|+++|||| |||
T Consensus 80 ka~~~~~~~m~~~~g~l---pG~ 99 (99)
T 3f42_A 80 AVEENRKNLAFNXLGNF---AKL 99 (99)
T ss_dssp HHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHCCC---CCC
T ss_conf 99999999999986575---799
>1ybx_A (A:) Conserved hypothetical protein; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MSE; 1.80A {Clostridium thermocellum}
Back Show alignment and structure
Probab=99.94 E-value=5e-26 Score=186.72 Aligned_cols=103 Identities=34% Similarity=0.519 Sum_probs=101.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCEEEEEEECCCCEEEEEECHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 92179999999999999999999985308999976984999996483074688647882910068999999999999999
Q gi|254780763|r 1 MSNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLFEDNVEILEDLIIAAHSDAHK 80 (107)
Q Consensus 1 M~nm~~llkqaq~mq~~m~~~q~eL~~~~v~g~sg~g~V~V~~~G~~~i~~i~Id~~~l~~~d~e~Ledli~~A~N~A~~ 80 (107)
+.|+.+|++++|++|++++++|++|+..+|+++|++|+|+||++|+++|++|+|||++++++|++.|+++|++|||+|.+
T Consensus 40 ~~dl~~mlk~aq~~q~~l~~~q~eL~~~~~~g~S~~GlV~Vtv~G~g~v~~I~Idp~~l~~~d~e~L~~lI~~Ain~A~~ 119 (143)
T 1ybx_A 40 GGNINNLVKQAQKXQRDXERVQEELKEKTVEASAGGGAVTVVATGRKDIKEITIKPEVVDPDDVEXLQDLILAAVNEALR 119 (143)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHCEEEEEETTTTEEEEEETTCCEEEEEECGGGCCTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEEEECCCEEEEEEECHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 74799999999999999999999984569999978986999997790589998688984965699999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 99999999999974489989999
Q gi|254780763|r 81 KIEDLVATKTQEITEGLPIPPGL 103 (107)
Q Consensus 81 k~~~~~~~~m~~~tggl~lp~g~ 103 (107)
++++..+++|.++||||++||||
T Consensus 120 ~a~~~~~e~m~~l~g~l~lppGm 142 (143)
T 1ybx_A 120 KADEXVTAEISKITGGLGGIPGL 142 (143)
T ss_dssp HHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 99999999999986799999988
>1ybx_A (A:) Conserved hypothetical protein; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MSE; 1.80A {Clostridium thermocellum}
Back Show alignment and structure
Probab=91.73 E-value=0.068 Score=33.61 Aligned_cols=100 Identities=10% Similarity=-0.001 Sum_probs=72.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCEEEEEEECCCCEEEEEECHHH--CC-CCHHHHH----HHHHHHH
Q ss_conf 217999999999999999999998530899997698499999648307468864788--29-1006899----9999999
Q gi|254780763|r 2 SNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSL--LF-EDNVEIL----EDLIIAA 74 (107)
Q Consensus 2 ~nm~~llkqaq~mq~~m~~~q~eL~~~~v~g~sg~g~V~V~~~G~~~i~~i~Id~~~--l~-~~d~e~L----edli~~A 74 (107)
+-+..++....+|.++++++|+++.+..-+-.. ++++.......+.|++|... .+ .-|++.+ .+.+.++
T Consensus 34 ~~~~~~~~dl~~mlk~aq~~q~~l~~~q~eL~~----~~~~g~S~~GlV~Vtv~G~g~v~~I~Idp~~l~~~d~e~L~~l 109 (143)
T 1ybx_A 34 GGFPGFGGNINNLVKQAQKXQRDXERVQEELKE----KTVEASAGGGAVTVVATGRKDIKEITIKPEVVDPDDVEXLQDL 109 (143)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHH----CEEEEEETTTTEEEEEETTCCEEEEEECGGGCCTTCHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC----CEEEEEECCCEEEEEEECCCEEEEEEECHHHCCCCCHHHHHHH
T ss_conf 899998747999999999999999999999845----6999997898699999779058999868898496569999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 999999999999999999744899899999998
Q gi|254780763|r 75 HSDAHKKIEDLVATKTQEITEGLPIPPGLKFPF 107 (107)
Q Consensus 75 ~N~A~~k~~~~~~~~m~~~tggl~lp~g~~lPf 107 (107)
+.+|+..+.+.+++.+....+. +.+||.+|.
T Consensus 110 I~~Ain~A~~~a~~~~~e~m~~--l~g~l~lpp 140 (143)
T 1ybx_A 110 ILAAVNEALRKADEXVTAEISK--ITGGLGGIP 140 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--HC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHCCCCCCC
T ss_conf 9999999999999999999999--867999999
>1j8b_A (A:) YBAB; hypothetical protein, structural genomics, structure 2 function project, S2F, unknown function; HET: MSE; 1.75A {Haemophilus influenzae rd KW20}
Back Show alignment and structure
Probab=90.70 E-value=0.057 Score=34.08 Aligned_cols=92 Identities=10% Similarity=0.111 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHEEEEEEECCCEEEEEEECCCCEEEEEECHHH--CC-CCHHHHH---HHHHHHHHHHHHHHHH
Q ss_conf 9999999999999998530899997698499999648307468864788--29-1006899---9999999999999999
Q gi|254780763|r 10 QFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSL--LF-EDNVEIL---EDLIIAAHSDAHKKIE 83 (107)
Q Consensus 10 qaq~mq~~m~~~q~eL~~~~v~g~sg~g~V~V~~~G~~~i~~i~Id~~~--l~-~~d~e~L---edli~~A~N~A~~k~~ 83 (107)
..++|.++++++|+++....-+-. .++|+.+...-.++|+++... .+ .-|.+.+ -+.+-.++-.|+..+.
T Consensus 9 n~~~m~~~aq~~q~~~~~~q~el~----~~~~~~~s~dG~V~Vtv~g~g~v~~i~I~~~~~~~d~e~L~~~i~~A~n~A~ 84 (112)
T 1j8b_A 9 GLGGLXKQAQQXQEKXQKXQEEIA----QLEVTGESGAGLVKITINGAHNCRRIDIDPSLXEDDKEXLEDLIAAAFNDAV 84 (112)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHT----TSEEEEEEGGGTEEEEEETTCCEEEEEECGGGGGSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH----CEEEEEEECCCEEEEEEECCCEEEEEEECHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999985----6099999779769999977827999998677714789999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 999999999744899899999998
Q gi|254780763|r 84 DLVATKTQEITEGLPIPPGLKFPF 107 (107)
Q Consensus 84 ~~~~~~m~~~tggl~lp~g~~lPf 107 (107)
+.+++.+...... +.+|++||+
T Consensus 85 ~~a~~~~~~~~~~--l~g~~~lPg 106 (112)
T 1j8b_A 85 RRAEELQKEKXAS--VTAGXPLPP 106 (112)
T ss_dssp HHHHHHHHHHHHH--HTCC-----
T ss_pred HHHHHHHHHHHHH--HHCCCCCCC
T ss_conf 9999999999999--857999998