254780763

 Score =  160 bits (405), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 79/105 (75%), Positives = 89/105 (84%)

Query: 3   NIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLFED 62
           NIMKM+GQFKEIQGKMEKMK SI +LE EGNAGGGMV VR+NGK+ML  VKI+ SLL ++
Sbjct: 2   NIMKMMGQFKEIQGKMEKMKSSIMALEVEGNAGGGMVRVRLNGKHMLLEVKIEDSLLCKE 61

Query: 63  NVEILEDLIIAAHSDAHKKIEDLVATKTQEITEGLPIPPGLKFPF 107
           N EILEDLI+AAH+DAHKKIEDLVA KTQE T GL +PPGL  P 
Sbjct: 62  NSEILEDLIVAAHNDAHKKIEDLVAEKTQEATAGLSLPPGLNLPL 106

Species: Candidatus Liberibacter solanacearum
Genus: Candidatus Liberibacter
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  136 bits (343), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 65/107 (60%), Positives = 85/107 (79%)

Query: 1   MSNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLF 60
           M +IM M+G+ KE+Q KMEKM+  I +LE EG +GGG+V+V++NGK  L G+KID SL  
Sbjct: 1   MRDIMGMMGKVKEMQAKMEKMQADIAALEVEGKSGGGLVTVKLNGKGSLLGLKIDPSLFK 60

Query: 61  EDNVEILEDLIIAAHSDAHKKIEDLVATKTQEITEGLPIPPGLKFPF 107
           ED+VEILEDLI+AAH+DA ++ E + A KT+EIT GLPIPPG+K PF
Sbjct: 61  EDDVEILEDLIVAAHNDAKERAEAITAEKTKEITAGLPIPPGMKLPF 107

Species: Agrobacterium sp. H13-3
Genus: Agrobacterium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  131 bits (330), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 64/107 (59%), Positives = 81/107 (75%)

Query: 1   MSNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLF 60
           M +IM M+G+ KE+Q KMEKM+E I SL+ EG +GGG+V+V + GK  L G+KID SL  
Sbjct: 1   MRDIMGMMGKVKEMQAKMEKMQEEIASLQVEGKSGGGLVTVTMTGKGELKGLKIDPSLFK 60

Query: 61  EDNVEILEDLIIAAHSDAHKKIEDLVATKTQEITEGLPIPPGLKFPF 107
           ED+VEILEDLI+AAH DA  K E + A KT+++T GLPIPPG K PF
Sbjct: 61  EDDVEILEDLIVAAHKDAKDKAEAIAAEKTKDMTAGLPIPPGFKLPF 107

Species: Agrobacterium vitis
Genus: Agrobacterium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  131 bits (330), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 61/107 (57%), Positives = 85/107 (79%)

Query: 1   MSNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLF 60
           M +IM M+G+ K++Q KME M+E I ++E EG +GGGMV+V+++GK  + G+KID S+  
Sbjct: 1   MKDIMGMMGKIKDMQAKMESMQEEIATMECEGVSGGGMVTVKLSGKGQMLGLKIDPSMFK 60

Query: 61  EDNVEILEDLIIAAHSDAHKKIEDLVATKTQEITEGLPIPPGLKFPF 107
           ED+VEILEDLIIAAH+DA  K E ++A +T+E+T GLPIPPG+K PF
Sbjct: 61  EDDVEILEDLIIAAHNDAKVKAETMMAERTKELTAGLPIPPGMKLPF 107

Species: Hoeflea phototrophica
Genus: Hoeflea
Family: Phyllobacteriaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  130 bits (327), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 62/107 (57%), Positives = 80/107 (74%)

Query: 1   MSNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLF 60
           M +IM M+G+ KE+Q KMEKM+  I  +  EG AGGG+V+V +NGK ++ G+KID SL  
Sbjct: 1   MRDIMGMMGKVKEMQAKMEKMQAEIADIRVEGKAGGGLVTVTVNGKGLMLGIKIDPSLFK 60

Query: 61  EDNVEILEDLIIAAHSDAHKKIEDLVATKTQEITEGLPIPPGLKFPF 107
           ED+VEILEDLI+AA+ DA  K E + A KT+E+T GLPIPPG K PF
Sbjct: 61  EDDVEILEDLIVAANKDAQDKAEAITAEKTRELTAGLPIPPGFKMPF 107

Species: Agrobacterium tumefaciens
Genus: Agrobacterium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  129 bits (324), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 62/107 (57%), Positives = 82/107 (76%)

Query: 1   MSNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLF 60
           M +IM M+G+ KE+Q KMEKM+  I +LE +G +GGG+V+VR++GK  +  +KID SL  
Sbjct: 1   MRDIMGMMGKVKEMQAKMEKMQAEIAALEIDGASGGGLVTVRLDGKGHMKSLKIDPSLFK 60

Query: 61  EDNVEILEDLIIAAHSDAHKKIEDLVATKTQEITEGLPIPPGLKFPF 107
           ED+VEILEDLI+AAH DA  K E + A KT+E+T GLPIPPG+K PF
Sbjct: 61  EDDVEILEDLIVAAHKDAKDKAEAVQAEKTRELTAGLPIPPGMKLPF 107

Species: Sinorhizobium medicae
Genus: Sinorhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  129 bits (324), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 61/107 (57%), Positives = 82/107 (76%)

Query: 1   MSNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLF 60
           M +IM M+G+ KE+Q KMEKM+  I +LE +G +GGG+V+VR++GK  +  +K+D SL  
Sbjct: 1   MRDIMGMMGKVKEMQAKMEKMQAEIAALEIDGTSGGGLVTVRLDGKGHMKSLKVDPSLFK 60

Query: 61  EDNVEILEDLIIAAHSDAHKKIEDLVATKTQEITEGLPIPPGLKFPF 107
           ED+VEILEDLI+AAH DA  K E + A KT+E+T GLPIPPG+K PF
Sbjct: 61  EDDVEILEDLIVAAHKDAKDKAEAVQAEKTRELTAGLPIPPGMKLPF 107

Species: Sinorhizobium meliloti
Genus: Sinorhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  129 bits (323), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 61/107 (57%), Positives = 83/107 (77%)

Query: 1   MSNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLF 60
           M +I+ M+G+ KE+Q KMEK++  I +LE +G +GGG+V+VR++GK  L  +KID SL  
Sbjct: 1   MRDIIGMMGKVKEMQAKMEKLQAEIAALEVDGTSGGGLVTVRLDGKGHLKSLKIDPSLFK 60

Query: 61  EDNVEILEDLIIAAHSDAHKKIEDLVATKTQEITEGLPIPPGLKFPF 107
           ED+VEILEDLI+AAH DA +K E + A KT+E+T GLPIPPG+K PF
Sbjct: 61  EDDVEILEDLIVAAHKDAKEKAEAVQAEKTRELTAGLPIPPGMKLPF 107

Species: Sinorhizobium fredii
Genus: Sinorhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  128 bits (321), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 64/107 (59%), Positives = 78/107 (72%)

Query: 1   MSNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLF 60
           M +IM M+G+ KE+Q KME+M+  I  L AEG AGGG+V+V I+GK  L  +KID SL  
Sbjct: 1   MRDIMGMMGKVKEMQAKMEQMQAEIAELTAEGKAGGGLVAVVISGKGELKSLKIDPSLFK 60

Query: 61  EDNVEILEDLIIAAHSDAHKKIEDLVATKTQEITEGLPIPPGLKFPF 107
           ED+VEILEDLI+AAH DA  K E L A KT+ +T GLPIPPG K PF
Sbjct: 61  EDDVEILEDLIVAAHKDAKDKAEALAAEKTKALTAGLPIPPGFKLPF 107

Species: Rhizobium leguminosarum
Genus: Rhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  128 bits (321), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 64/107 (59%), Positives = 78/107 (72%)

Query: 1   MSNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLF 60
           M +IM M+G+ KE+Q KME+M+  I  L AEG AGGG+V+V I+GK  L  +KID SL  
Sbjct: 1   MRDIMGMMGKVKEMQAKMEQMQAEIAELTAEGKAGGGLVTVVISGKGELKSLKIDPSLFK 60

Query: 61  EDNVEILEDLIIAAHSDAHKKIEDLVATKTQEITEGLPIPPGLKFPF 107
           ED+VEILEDLI+AAH DA  K E L A KT+ +T GLPIPPG K PF
Sbjct: 61  EDDVEILEDLIVAAHKDAKDKAEALAAEKTKALTAGLPIPPGFKLPF 107

Species: Rhizobium etli
Genus: Rhizobium
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score =  106 bits (267), Expect = 1e-24
 Identities = 44/101 (43%), Positives = 68/101 (67%)

Query: 1   MSNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLF 60
           M N+  ++ Q +++Q KM+KM+E +  +E EG AGGG+V V + GK  +  VKID SL+ 
Sbjct: 2   MGNMQNLMKQAQQMQEKMQKMQEELAQMEVEGEAGGGLVKVTMTGKKEVKRVKIDPSLVD 61

Query: 61  EDNVEILEDLIIAAHSDAHKKIEDLVATKTQEITEGLPIPP 101
            ++VE+LEDLI+AA +DA +K E+ +  K  ++T GL  P 
Sbjct: 62  PEDVEMLEDLILAAFNDALRKAEETMKEKMGKLTGGLLPPG 102

Length = 104

 Score = 83.0 bits (205), Expect = 2e-17
 Identities = 47/104 (45%), Positives = 70/104 (67%), Gaps = 2/104 (1%)

Query: 1   MSNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLF 60
           M ++ K++ Q +++Q KM+KM+E +   E  G AGGG+V+V INGK  +  V+ID SLL 
Sbjct: 4   MMDMQKLMKQAQQMQKKMQKMQEELAQKEVTGKAGGGLVTVTINGKGEVKSVEIDPSLLD 63

Query: 61  EDNVEILEDLIIAAHSDAHKKIEDLVATKTQEITEGLPIPPGLK 104
            ++ E+LEDLI+AA +DA KK+E+    K   +T G+  PPG K
Sbjct: 64  PEDKEMLEDLILAAFNDAKKKVEETRKEKMGALTGGM--PPGFK 105

Length = 105

 Score = 66.3 bits (162), Expect = 1e-12
 Identities = 44/103 (42%), Positives = 66/103 (64%), Gaps = 4/103 (3%)

Query: 1   MSNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLF 60
             N+ +++ Q +++Q KM+K++E I   E  G +G G+V+V ING   L  ++ID SLL 
Sbjct: 4   KGNLGELMKQAQQMQEKMKKLQEEIAQFEVTGKSGAGLVTVTINGNLELKSIEIDPSLLE 63

Query: 61  EDNVEILEDLIIAAHSDAHKKIEDLVATKTQEITEGLPIPPGL 103
           ED  E LED+I  A +DA KK+E    T  + +T G+P+PPGL
Sbjct: 64  EDK-EALEDMITEALNDAVKKVE---ETYKELMTSGMPLPPGL 102

The function of this protein is unknown, but it has been expressed and crystallized. Its gene nearly always occurs next to recR and/or dnaX. It is restricted to Bacteria and the plant Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A member is present even in the minimal gene complement of Mycoplasm genitalium. Length = 102

 Score = 61.9 bits (150), Expect = 4e-11
 Identities = 36/109 (33%), Positives = 59/109 (54%), Gaps = 4/109 (3%)

Query: 1   MSNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLF 60
           M ++  ++ Q + +Q K+   +  +     EG +GGGMV+V + G   L  V +D SL+ 
Sbjct: 1   MKDLGGLMKQAQAMQQKLADAQARLAETTVEGTSGGGMVTVTLMGNGELVRVLMDESLVQ 60

Query: 61  EDNVEILEDLIIAAHSDAHKKIEDLVATKTQE----ITEGLPIPPGLKF 105
               E++ DLI+AAH+DA KK++   A   QE    +   +   PG+KF
Sbjct: 61  PGEGEVIADLIVAAHADAKKKLDAKQAQLMQEAAGPMAGLMGGLPGMKF 109

Length = 109

 Score = 61.8 bits (150), Expect = 4e-11
 Identities = 36/96 (37%), Positives = 59/96 (61%), Gaps = 1/96 (1%)

Query: 3   NIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLFED 62
           N+ +++ Q + I+  +EK KE +   E     GGGMV V  NG   +  V+ID+SLL ED
Sbjct: 6   NLAELMKQMQSIKENVEKAKEELKKEEIVVEVGGGMVKVVSNGLGEIKDVEIDKSLLNED 65

Query: 63  NVEILEDLIIAAHSDAHKKIEDLVATKTQEITEGLP 98
             E+L+DL+IAA ++A ++ ++++  K  +   GLP
Sbjct: 66  EYEVLKDLLIAAFNEASRRSKEVMGEKMTQAA-GLP 100

Length = 110

 Score = 59.2 bits (143), Expect = 2e-10
 Identities = 37/97 (38%), Positives = 60/97 (61%), Gaps = 3/97 (3%)

Query: 1   MSNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLF 60
           MS  +  +G  +E   KME++K+ I S+   G+AG GMV+V   G+  +T V I++ L  
Sbjct: 8   MSEALSNMGNIRE---KMEEVKKRIASIRVVGDAGAGMVTVTATGEGQITNVFINKQLFD 64

Query: 61  EDNVEILEDLIIAAHSDAHKKIEDLVATKTQEITEGL 97
            D+ ++LEDL++AA +DA KK ++  A + Q  + GL
Sbjct: 65  ADDNKMLEDLVMAATNDALKKAKEATAYEFQNASGGL 101

Length = 115

 Score = 56.0 bits (135), Expect = 2e-09
 Identities = 31/97 (31%), Positives = 57/97 (58%), Gaps = 2/97 (2%)

Query: 1  MSNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLF 60
          M N+  M+ Q ++   KM+ +++ +  L A G AGGGMV   +NGK  L  + ID  ++ 
Sbjct: 3  MPNLGDMMKQIQQAGEKMQDVQKQLEKLVAHGEAGGGMVKASVNGKQKLLSLAIDPEIM- 61

Query: 61 EDNVEILEDLIIAAHSDAHKKIEDLVATKTQEITEGL 97
           D+VE+++DL++AA + A ++   L   +  ++  G+
Sbjct: 62 -DDVEMVQDLVVAAVNSALEESAKLAQEEISKVAGGM 97

Length = 111

 Score = 54.8 bits (131), Expect = 5e-09
 Identities = 30/95 (31%), Positives = 60/95 (63%)

Query: 3  NIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLFED 62
          N  +++   +++Q +M+K++E + +   EG AGGG ++V++NG   +  + I   ++  D
Sbjct: 2  NQRQLMQMAQQMQRQMQKVQEELAATIVEGTAGGGAITVKMNGHREVQSITISPEVVDPD 61

Query: 63 NVEILEDLIIAAHSDAHKKIEDLVATKTQEITEGL 97
          +VE+L+DL++ A +DA +K + L   + Q +T GL
Sbjct: 62 DVEMLQDLLLVAINDASRKAQQLAEERMQPLTGGL 96

Length = 100

 Score = 52.0 bits (125), Expect = 3e-08
 Identities = 29/84 (34%), Positives = 50/84 (59%), Gaps = 2/84 (2%)

Query: 1  MSNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLF 60
            +  K+    +++Q K ++++E   + E    +GGG+VSV  NGK  +  + ID SLL 
Sbjct: 4  NMDFSKLGEMLEQMQKKAKQLEEENANKEFTAKSGGGLVSVSANGKGEVIDISIDDSLL- 62

Query: 61 EDNVEILEDLIIAAHSDAHKKIED 84
          ED  E L+ L+I+A +D +K +E+
Sbjct: 63 EDK-ESLQILLISAINDVYKMVEE 85

Length = 103

 Score = 46.6 bits (110), Expect = 1e-06
 Identities = 29/98 (29%), Positives = 52/98 (53%)

Query: 3   NIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLFED 62
           +I  ++ Q K+++  M   KE +  +  E  +GGG+V V +NGK  +T + +D   +  +
Sbjct: 2   DIQYLMRQAKKLEKAMADAKEKLAEIAVEAESGGGLVKVAMNGKCEVTRLTVDPKAVDPN 61

Query: 63  NVEILEDLIIAAHSDAHKKIEDLVATKTQEITEGLPIP 100
           +  +LEDL+ AA + A +K          + T G+ IP
Sbjct: 62  DKAMLEDLVTAAVNAAVEKARTAADESMSKATGGIKIP 99

Length = 103

 Score = 44.6 bits (105), Expect = 6e-06
 Identities = 29/103 (28%), Positives = 56/103 (54%), Gaps = 5/103 (4%)

Query: 1   MSNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLF 60
           + +  KM    +E+Q K+++++ES + +E E + GGG V +       +  ++ID  L  
Sbjct: 21  LKDFAKMQ---EELQKKIQELEESFSQIEVEASVGGGAVRIVATCDRRVKDIEIDEDLK- 76

Query: 61  EDNVEILEDLIIAAHSDAHKKIEDLVATKTQEITEGLPIPPGL 103
            ++ E L+DL+IA  ++  +KIE     +  +IT+   IP  +
Sbjct: 77  -EDFETLKDLLIAGMNEVMEKIEKRREEEMSKITQQFGIPGLM 118

Length = 118

 Score = 38.6 bits (90), Expect = 3e-04
 Identities = 28/102 (27%), Positives = 54/102 (52%), Gaps = 3/102 (2%)

Query: 3   NIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLFED 62
           ++M M+G+ KE Q K+E  K+ + ++  +  +  G++ V +     +  + ID  LL ED
Sbjct: 2   DMMGMMGKLKEAQQKVEATKKRLDTVLIDEQSSDGLLKVTVTANREIKSISIDDELL-ED 60

Query: 63  NVEILEDLIIAAHSDAHKKIEDLVATKTQEIT-EGLPIPPGL 103
             E LED ++   + A +K  ++   +   +  EG+P  PG+
Sbjct: 61  K-EQLEDYLVLTLNKAIEKATEINEAELGAVAKEGMPDIPGM 101

Length = 106

 Score = 93.4 bits (233), Expect = 1e-20
 Identities = 43/92 (46%), Positives = 62/92 (67%), Gaps = 1/92 (1%)

Query: 9   GQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLFEDNVEILE 68
            Q +++Q KMEK +E + + E EG +GGG+V V +NGK  +  V+ID  LL ED  E+LE
Sbjct: 2   KQAQQMQEKMEKAQEELANKEVEGTSGGGLVKVTVNGKGEVKDVEIDPELLDED-KEMLE 60

Query: 69  DLIIAAHSDAHKKIEDLVATKTQEITEGLPIP 100
           DLI+AA +DA KK E+L   +  ++T GL +P
Sbjct: 61  DLIVAAINDALKKAEELAKEEMGKLTGGLNLP 92

Length = 92

Probab=100.00  E-value=1.8e-32  Score=228.11  Aligned_cols=105  Identities=43%  Similarity=0.736  Sum_probs=103.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCEEEEEEECCCCEEEEEECHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             92179999999999999999999985308999976984999996483074688647882910068999999999999999
Q gi|254780763|r    1 MSNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLFEDNVEILEDLIIAAHSDAHK   80 (107)
Q Consensus         1 M~nm~~llkqaq~mq~~m~~~q~eL~~~~v~g~sg~g~V~V~~~G~~~i~~i~Id~~~l~~~d~e~Ledli~~A~N~A~~   80 (107)
T Consensus         3 m~nm~~mmkqaq~mq~~~~~~q~el~~~~v~~~sg~glV~V~~nG~~~v~~i~Id~~ll~~~d~e~LedlI~~A~N~A~~   82 (107)
T PRK00153          3 MGNMANLMKQAQQMQEKMQKMQEELANKEVTGTAGGGLVTVTMTGKKEVVRVKIDPSVVDPEDVEMLEDLVAAAFNDALR   82 (107)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEEEECCCEEEEEEECHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             43599999999999999999999983758999987985999995495699999888986941599999999999999999


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             999999999999744899899999998
Q gi|254780763|r   81 KIEDLVATKTQEITEGLPIPPGLKFPF  107 (107)
Q Consensus        81 k~~~~~~~~m~~~tggl~lp~g~~lPf  107 (107)
T Consensus        83 ka~~~~~~~m~~~tgg~-~~PG~~-p~  107 (107)
T PRK00153         83 KADETTQEKMGALTGGL-LPPGFK-PF  107 (107)
T ss_pred             HHHHHHHHHHHHHHCCC-CCCCCC-CC
T ss_conf             99999999999984798-999999-98

Probab=99.97  E-value=1.9e-29  Score=208.92  Aligned_cols=102  Identities=46%  Similarity=0.734  Sum_probs=99.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCEEEEEEECCCCEEEEEECHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             92179999999999999999999985308999976984999996483074688647882910068999999999999999
Q gi|254780763|r    1 MSNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLFEDNVEILEDLIIAAHSDAHK   80 (107)
Q Consensus         1 M~nm~~llkqaq~mq~~m~~~q~eL~~~~v~g~sg~g~V~V~~~G~~~i~~i~Id~~~l~~~d~e~Ledli~~A~N~A~~   80 (107)
T Consensus         4 ~~~~~~l~kqaqqmQ~~~~~~Q~ela~~ev~g~aggGlVtV~~~G~~ev~~v~Idp~l~dpeD~E~LeDLi~aA~ndA~~   83 (105)
T COG0718           4 MMDMQKLMKQAQQMQKKMQKMQEELAQKEVTGKAGGGLVTVTINGKGEVKSVEIDPSLLDPEDKEMLEDLILAAFNDAKK   83 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCEEEEEEECCCCEEEEEECHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             13099999999999999999999998527765227847999994796478887287875964188999999999999999


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             999999999999744899899999
Q gi|254780763|r   81 KIEDLVATKTQEITEGLPIPPGLK  104 (107)
Q Consensus        81 k~~~~~~~~m~~~tggl~lp~g~~  104 (107)
T Consensus        84 kv~e~~~e~m~~~t~gm~-P-G~~  105 (105)
T COG0718          84 KVEETRKEKMGALTGGMP-P-GFK  105 (105)
T ss_pred             HHHHHHHHHHHHHHCCCC-C-CCC
T ss_conf             999999999998645489-9-999

Probab=99.96  E-value=2.1e-28  Score=202.23  Aligned_cols=94  Identities=31%  Similarity=0.453  Sum_probs=92.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCEEEEEEECCCCEEEEEECHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             17999999999999999999998530899997698499999648307468864788291006899999999999999999
Q gi|254780763|r    3 NIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLFEDNVEILEDLIIAAHSDAHKKI   82 (107)
Q Consensus         3 nm~~llkqaq~mq~~m~~~q~eL~~~~v~g~sg~g~V~V~~~G~~~i~~i~Id~~~l~~~d~e~Ledli~~A~N~A~~k~   82 (107)
T Consensus         2 d~~~mmkqaq~mQ~km~~~Qeel~~~~v~g~sGGGlVkV~~nGk~ev~~i~IDp~l~--eD~emLeDLI~aA~NdA~~k~   79 (97)
T PRK03762          2 DFSKMGEMLEQMQEKAKQLEEENANTEFTAKSGGGLVSVSANGKGEIIDISIDDSLL--EDKESLQILLISAINDVLKMV   79 (97)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEEEECCCEEEEEEECHHHC--CCHHHHHHHHHHHHHHHHHHH
T ss_conf             889999999999999999999984879999974967999995573089999887880--768799999999999999999


Q ss_pred             HHHHHHHHHHHHCCCC
Q ss_conf             9999999999744899
Q gi|254780763|r   83 EDLVATKTQEITEGLP   98 (107)
Q Consensus        83 ~~~~~~~m~~~tggl~   98 (107)
T Consensus        80 ~~~~~~~m~~~tgGmg   95 (97)
T PRK03762         80 EENRKNLAFNMLGGFG   95 (97)
T ss_pred             HHHHHHHHHHHHCCCC
T ss_conf             9999999998757788

Probab=99.94  E-value=2.6e-26  Score=188.90  Aligned_cols=98  Identities=18%  Similarity=0.218  Sum_probs=93.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCEEEEEEECCCCEEEEEECHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             17999999999999999999998530899997698499999648307468864788291006899999999999999999
Q gi|254780763|r    3 NIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLFEDNVEILEDLIIAAHSDAHKKI   82 (107)
Q Consensus         3 nm~~llkqaq~mq~~m~~~q~eL~~~~v~g~sg~g~V~V~~~G~~~i~~i~Id~~~l~~~d~e~Ledli~~A~N~A~~k~   82 (107)
T Consensus         2 Nm~~mmkQaqkMQ~~m~~~Qeel~~~~~~~s~-gG~V~v~~nG~~ei~~i~I~pe~VDPeD~EmLeDLi~aAvNeAl~~v   80 (99)
T PRK00587          2 NFQKLAQQLKKMQNTMEKKQKEFEEKEFDFDY-KKYILIKIKGNLNIEKIEINKELIDPEDKETLQDMLREAINEAISIT   80 (99)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEC-CCEEEEEEECCEEEEEEEECHHCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             88999999999999999999999737888855-98799999678469998727001694218899999999999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCC
Q ss_conf             999999999974489989999
Q gi|254780763|r   83 EDLVATKTQEITEGLPIPPGL  103 (107)
Q Consensus        83 ~~~~~~~m~~~tggl~lp~g~  103 (107)
T Consensus        81 ~~~~~~~m~~~m~~~--tG~f   99 (99)
T PRK00587         81 CKERDAIMNSTIPKG--TGLF   99 (99)
T ss_pred             HHHHHHHHHHHCCCC--CCCC
T ss_conf             999999998663788--8999

Probab=99.94  E-value=3e-26  Score=188.56  Aligned_cols=101  Identities=43%  Similarity=0.656  Sum_probs=99.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCEEEEEEECCCCEEEEEECHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             17999999999999999999998530899997698499999648307468864788291006899999999999999999
Q gi|254780763|r    3 NIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLFEDNVEILEDLIIAAHSDAHKKI   82 (107)
Q Consensus         3 nm~~llkqaq~mq~~m~~~q~eL~~~~v~g~sg~g~V~V~~~G~~~i~~i~Id~~~l~~~d~e~Ledli~~A~N~A~~k~   82 (107)
T Consensus        12 ~l~~~m~~a~~~q~~~~~l~eE~~~~~~~gksG~GlV~v~~~G~~~~~~~~Id~~l~d~~D~~~Le~~i~~A~NdA~~~v   91 (112)
T TIGR00103        12 NLGELMKQAQKVQEKMKKLQEEIAKLEVTGKSGAGLVTVTINGNLELKSIEIDPSLLDPEDKEALEDLITEALNDAVKKV   91 (112)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCEEEEEEECCCCCEEEECCHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             79999999999999899999888721316423773578886368652021035533286664889999999999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCC
Q ss_conf             999999999974489989999
Q gi|254780763|r   83 EDLVATKTQEITEGLPIPPGL  103 (107)
Q Consensus        83 ~~~~~~~m~~~tggl~lp~g~  103 (107)
T Consensus        92 ~e~~~~kM~~~~~~l~~~PGl  112 (112)
T TIGR00103        92 KEKYKEKMALVTKGLPLVPGL  112 (112)
T ss_pred             HHHHHHHHHHHHHHCCCCCCC
T ss_conf             999988899999752789899

It is restricted to bacteria and a few plants, such as Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A crystal structure of one member, YbaB from Haemophilus influenzae, revealed a core structure consisting of two layers, alpha/beta; YbaB forms a tight dimer with a 3-layer structure, beta/alpha/beta . YbaB is co-transcribed with recR, which appears to protect DNA strands of the replilcation fork when it is blocked by DNA damage. A deletion of the YbaB operon resulted in increased sensitivity to DNA-damaging agents compared with the wild-type strain..

Probab=99.92  E-value=2.3e-24  Score=176.58  Aligned_cols=92  Identities=45%  Similarity=0.688  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHEEEEEEECCCEEEEEEECCCCEEEEEECHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999853089999769849999964830746886478829100689999999999999999999999
Q gi|254780763|r    8 VGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLFEDNVEILEDLIIAAHSDAHKKIEDLVA   87 (107)
Q Consensus         8 lkqaq~mq~~m~~~q~eL~~~~v~g~sg~g~V~V~~~G~~~i~~i~Id~~~l~~~d~e~Ledli~~A~N~A~~k~~~~~~   87 (107)
T Consensus         1 ~~qaq~mq~~~~~~q~el~~~~~~~~s~~g~V~v~~~G~~~v~~i~Id~~l~~-~d~e~Ledli~~A~n~A~~~a~~~~~   79 (92)
T pfam02575         1 MKQAQQMQEKMEKAQEELANKEVEGTSGGGLVKVTVNGKGEVKDVEIDPELLD-EDKEMLEDLIVAAINDALKKAEELAK   79 (92)
T ss_pred             CHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEEECCCCEEEEEEECHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             95899999999999999727499999889839999826847999999889963-88999999999999999999999999


Q ss_pred             HHHHHHHCCCCCC
Q ss_conf             9999974489989
Q gi|254780763|r   88 TKTQEITEGLPIP  100 (107)
Q Consensus        88 ~~m~~~tggl~lp  100 (107)
T Consensus        80 ~~m~~~~gg~~~p   92 (92)
T pfam02575        80 EEMGKLTGGLNLP   92 (92)
T ss_pred             HHHHHHHCCCCCC
T ss_conf             9999983699999

Probab=94.92  E-value=0.28  Score=30.14  Aligned_cols=90  Identities=14%  Similarity=0.145  Sum_probs=57.2

Q ss_pred             CCCHHHHHHHHH----HHHHHHHHHHHHHH---HEEEEEEECCCEEEEEEECCCCEEEEEECHHHCCCCHHHHHHHHHHH
Q ss_conf             921799999999----99999999999985---30899997698499999648307468864788291006899999999
Q gi|254780763|r    1 MSNIMKMVGQFK----EIQGKMEKMKESIT---SLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLFEDNVEILEDLIIA   73 (107)
Q Consensus         1 M~nm~~llkqaq----~mq~~m~~~q~eL~---~~~v~g~sg~g~V~V~~~G~~~i~~i~Id~~~l~~~d~e~Ledli~~   73 (107)
T Consensus         3 m~~mmkQaqkMQ~~m~~~Qeel~~~--~~~~s~gG~V~v~~nG~~ei~~i~I~pe~VDPe-D~EmL----eDLi~aAvNe   75 (99)
T PRK00587          3 FQKLAQQLKKMQNTMEKKQKEFEEK--EFDFDYKKYILIKIKGNLNIEKIEINKELIDPE-DKETL----QDMLREAINE   75 (99)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHC--EEEEECCCEEEEEEECCEEEEEEEECHHCCCCC-CHHHH----HHHHHHHHHH
T ss_conf             8999999999999999999999737--888855987999996784699987270016942-18899----9999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             999999999999999999974489
Q gi|254780763|r   74 AHSDAHKKIEDLVATKTQEITEGL   97 (107)
Q Consensus        74 A~N~A~~k~~~~~~~~m~~~tggl   97 (107)
T Consensus        76 Al~~v~~~~~~~m~~~m~~~tG~f   99 (99)
T PRK00587         76 AISITCKERDAIMNSTIPKGTGLF   99 (99)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             999999999999986637888999

Probab=90.95  E-value=0.63  Score=27.87  Aligned_cols=93  Identities=15%  Similarity=0.171  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHEEEEEEECCCEEEEEEECCCCEEEEEECHH--HCC-CCHHHHH----HHHHHHHHHHHHHH
Q ss_conf             9999999999999999853089999769849999964830746886478--829-1006899----99999999999999
Q gi|254780763|r    9 GQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRS--LLF-EDNVEIL----EDLIIAAHSDAHKK   81 (107)
Q Consensus         9 kqaq~mq~~m~~~q~eL~~~~v~g~sg~g~V~V~~~G~~~i~~i~Id~~--~l~-~~d~e~L----edli~~A~N~A~~k   81 (107)
T Consensus         4 ~nm~~mmkqaq~mq~~~~~~q~el~~----~~v~~~sg~glV~V~~nG~~~v~~i~Id~~ll~~~d~e~LedlI~~A~N~   79 (107)
T PRK00153          4 GNMANLMKQAQQMQEKMQKMQEELAN----KEVTGTAGGGLVTVTMTGKKEVVRVKIDPSVVDPEDVEMLEDLVAAAFND   79 (107)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHC----CEEEEEECCCEEEEEEECCCEEEEEEECHHHCCCCCHHHHHHHHHHHHHH
T ss_conf             35999999999999999999999837----58999987985999995495699999888986941599999999999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             99999999999744899899999998
Q gi|254780763|r   82 IEDLVATKTQEITEGLPIPPGLKFPF  107 (107)
Q Consensus        82 ~~~~~~~~m~~~tggl~lp~g~~lPf  107 (107)
T Consensus        80 A~~ka~~~~~~~m~~--~tgg~~~PG  103 (107)
T PRK00153         80 ALRKADETTQEKMGA--LTGGLLPPG  103 (107)
T ss_pred             HHHHHHHHHHHHHHH--HHCCCCCCC
T ss_conf             999999999999999--847989999

 Score =  107 bits (269), Expect = 6e-25
 Identities = 45/107 (42%), Positives = 69/107 (64%), Gaps = 1/107 (0%)

Query: 1   MSNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLF 60
              +  ++ Q +++Q KM+KM+E I  LE  G +G G+V + ING +    + ID SL+ 
Sbjct: 7   KGGLGGLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKITINGAHNCRRIDIDPSLME 66

Query: 61  EDNVEILEDLIIAAHSDAHKKIEDLVATKTQEITEGLPIPPGLKFPF 107
           +D  E+LEDLI AA +DA ++ E+L   K   +T G+P+PPG+KFPF
Sbjct: 67  DD-KEMLEDLIAAAFNDAVRRAEELQKEKMASVTAGMPLPPGMKFPF 112

 Score =  103 bits (258), Expect = 1e-23
 Identities = 36/101 (35%), Positives = 63/101 (62%)

Query: 3   NIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLFED 62
           NI  +V Q +++Q  ME+++E +     E +AGGG V+V   G+  +  + I   ++  D
Sbjct: 42  NINNLVKQAQKMQRDMERVQEELKEKTVEASAGGGAVTVVATGRKDIKEITIKPEVVDPD 101

Query: 63  NVEILEDLIIAAHSDAHKKIEDLVATKTQEITEGLPIPPGL 103
           +VE+L+DLI+AA ++A +K +++V  +  +IT GL   PGL
Sbjct: 102 DVEMLQDLILAAVNEALRKADEMVTAEISKITGGLGGIPGL 142

 Score = 83.2 bits (206), Expect = 1e-17
 Identities = 22/97 (22%), Positives = 46/97 (47%), Gaps = 2/97 (2%)

Query: 1  MSNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLF 60
            +  ++ G    ++ +  +++E          +GGGMVSV  NG   L  ++ID SLL 
Sbjct: 2  HMDFSQLGGLLDGMKKEFSQLEEKNKDTIHTSKSGGGMVSVSFNGLGELVDLQIDDSLL- 60

Query: 61 EDNVEILEDLIIAAHSDAHKKIEDLVATKTQEITEGL 97
           ++ E ++  +++A +D +K +E+        +    
Sbjct: 61 -EDKEAMQIYLMSALNDGYKAVEENRKNLAFNMLGNF 96

Probab=100.00  E-value=7.3e-33  Score=229.13  Aligned_cols=106  Identities=42%  Similarity=0.734  Sum_probs=103.7

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCEEEEEEECCCCEEEEEECHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             92179999999999999999999985308999976984999996483074688647882910068999999999999999
Q gi|254780763|r    1 MSNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLFEDNVEILEDLIIAAHSDAHK   80 (107)
Q Consensus         1 M~nm~~llkqaq~mq~~m~~~q~eL~~~~v~g~sg~g~V~V~~~G~~~i~~i~Id~~~l~~~d~e~Ledli~~A~N~A~~   80 (107)
                      |+||++||+|||+||++++++|++|++++|+|+|++|+|+||+||+++|++|+|||++++ +|+++|+|+|++|||+|++
T Consensus         7 ~~nm~~mlkqaq~mq~~~~~~q~eL~~~~v~~~s~~g~V~V~~~G~~~v~~i~Id~~~l~-~d~e~LedlI~~A~N~A~~   85 (112)
T 1j8b_A            7 KGGLGGLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKITINGAHNCRRIDIDPSLME-DDKEMLEDLIAAAFNDAVR   85 (112)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHHHHTTSEEEEEEGGGTEEEEEETTCCEEEEEECGGGGG-SCHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEEEECCCEEEEEEECHHHHC-CCHHHHHHHHHHHHHHHHH
T ss_conf             778999999999999999999999856299999879769999976947999998888841-7899999999999999999


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             999999999999744899899999998
Q gi|254780763|r   81 KIEDLVATKTQEITEGLPIPPGLKFPF  107 (107)
Q Consensus        81 k~~~~~~~~m~~~tggl~lp~g~~lPf  107 (107)
                      ++++.++++|+++|||+++||||+|||
T Consensus        86 ka~~~~~~~m~~ltggl~lppg~~~p~  112 (112)
T 1j8b_A           86 RAEELQKEKMASVTAGMPLPPGMKFPF  112 (112)
T ss_dssp             HHHHHHHHHHHHHTCC-----------
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             999999999999857999998999997

Probab=99.97  E-value=1.7e-30  Score=214.06  Aligned_cols=102  Identities=35%  Similarity=0.575  Sum_probs=100.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCEEEEEEECCCCEEEEEECHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             21799999999999999999999853089999769849999964830746886478829100689999999999999999
Q gi|254780763|r    2 SNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLFEDNVEILEDLIIAAHSDAHKK   81 (107)
Q Consensus         2 ~nm~~llkqaq~mq~~m~~~q~eL~~~~v~g~sg~g~V~V~~~G~~~i~~i~Id~~~l~~~d~e~Ledli~~A~N~A~~k   81 (107)
                      +||++||+|||+||++|+++|++|++.+|+|+|++|+|+||+||+++|++|+|||++++++|+|+|||+|++|||+|+++
T Consensus        41 Gnm~~mmkqAq~mQ~km~~~QeeL~~~~veg~sg~GlVkVtvnG~~~V~~V~Idpell~~ed~e~LedlI~aAiNdA~~k  120 (143)
T 1ybx_A           41 GNINNLVKQAQKMQRDMERVQEELKEKTVEASAGGGAVTVVATGRKDIKEITIKPEVVDPDDVEMLQDLILAAVNEALRK  120 (143)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHCEEEEEETTTTEEEEEETTCCEEEEEECGGGCCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEEEECCEEEEEEEECHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             47999999999999999999999845699999889879999978916999997889849656999999999999999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             9999999999974489989999
Q gi|254780763|r   82 IEDLVATKTQEITEGLPIPPGL  103 (107)
Q Consensus        82 ~~~~~~~~m~~~tggl~lp~g~  103 (107)
                      +++..+++|+++||||+.||||
T Consensus       121 a~~~~~e~m~~ltGgl~~~PGl  142 (143)
T 1ybx_A          121 ADEMVTAEISKITGGLGGIPGL  142 (143)
T ss_dssp             HHHHHHHHHHHHC---------
T ss_pred             HHHHHHHHHHHHHCCCCCCCCC
T ss_conf             9999999999986799999988

Probab=99.93  E-value=2.1e-25  Score=181.85  Aligned_cols=96  Identities=23%  Similarity=0.378  Sum_probs=93.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCEEEEEEECCCCEEEEEECHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             92179999999999999999999985308999976984999996483074688647882910068999999999999999
Q gi|254780763|r    1 MSNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLFEDNVEILEDLIIAAHSDAHK   80 (107)
Q Consensus         1 M~nm~~llkqaq~mq~~m~~~q~eL~~~~v~g~sg~g~V~V~~~G~~~i~~i~Id~~~l~~~d~e~Ledli~~A~N~A~~   80 (107)
                      |.||++||+|+|+||++|+++|++|++.+|+|+|++|+|+|++||+++|++|+|||+++  +|+++|||+|++|||+|++
T Consensus         2 ~md~~~ml~~~q~mq~~m~~~q~eL~~~~v~~~s~~g~V~V~~~G~~~v~~i~Id~~~l--ed~e~LedlI~~A~n~A~~   79 (99)
T 3f42_A            2 HMDFSQLGGLLDGMKKEFSQLEEKNKDTIHTSKSGGGMVSVSFNGLGELVDLQIDDSLL--EDKEAMQIYLMSALNDGYK   79 (99)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEGGGTEEEEEETTSCEEEEEECGGGG--GCHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEEEECCCEEEEEEECHHHH--CCHHHHHHHHHHHHHHHHH
T ss_conf             98999999999999999999999973738999988976999997683399999896780--8999999999999999999


Q ss_pred             HHHHHHHHHHHHHHCCCC
Q ss_conf             999999999999744899
Q gi|254780763|r   81 KIEDLVATKTQEITEGLP   98 (107)
Q Consensus        81 k~~~~~~~~m~~~tggl~   98 (107)
                      ++++..+++|+++||||+
T Consensus        80 k~~~~~~~~m~~~tgg~g   97 (99)
T 3f42_A           80 AVEENRKNLAFNMLGNFA   97 (99)
T ss_dssp             HHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHCCCC
T ss_conf             999999999999856867

class: Alpha and beta proteins (a+b)
fold: YbaB-like
superfamily: YbaB-like
family: YbaB-like
domain: Hypothetical protein HI0442
species: Haemophilus influenzae [TaxId: 727]

 Score = 85.5 bits (212), Expect = 1e-18
 Identities = 39/96 (40%), Positives = 59/96 (61%), Gaps = 4/96 (4%)

Query: 1  MSNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLF 60
          +  +MK   Q +++Q KM+KM+E I  LE  G +G G+V + ING +    + ID SL+ 
Sbjct: 1  LGGLMK---QAQQMQEKMQKMQEEIAQLEVTGESGAGLVKITINGAHNCRRIDIDPSLME 57

Query: 61 EDNVEILEDLIIAAHSDAHKKIEDLVATKTQEITEG 96
          +D  E+LEDLI AA +DA ++ E+L   K   +T G
Sbjct: 58 DD-KEMLEDLIAAAFNDAVRRAEELQKEKMASVTAG 92

class: Alpha and beta proteins (a+b)
fold: YbaB-like
superfamily: YbaB-like
family: YbaB-like
domain: Hypothetical protein HI0442
species: Haemophilus influenzae [TaxId: 727]

Probab=99.93  E-value=9e-26  Score=182.63  Aligned_cols=92  Identities=40%  Similarity=0.621  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCEEEEEEECCCCEEEEEECHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             79999999999999999999985308999976984999996483074688647882910068999999999999999999
Q gi|254780763|r    4 IMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLFEDNVEILEDLIIAAHSDAHKKIE   83 (107)
Q Consensus         4 m~~llkqaq~mq~~m~~~q~eL~~~~v~g~sg~g~V~V~~~G~~~i~~i~Id~~~l~~~d~e~Ledli~~A~N~A~~k~~   83 (107)
                      |++||+|||+||++|+++|++|++.+|+|+||+|+|+|++||+++|++|+|||++++ +|+++|||||++|||+|+++++
T Consensus         1 m~~mmkqaq~mq~~m~~~q~eL~~~~v~~~sg~g~V~V~~~G~~~v~~i~Id~~~l~-~d~e~LedlI~~A~N~A~~k~~   79 (92)
T d1j8ba_           1 LGGLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKITINGAHNCRRIDIDPSLME-DDKEMLEDLIAAAFNDAVRRAE   79 (92)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHTTSEEEEEEGGGTEEEEEETTCCEEEEEECGGGGG-SCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCEEEEEEECCEEEEEEEECHHHHC-CCHHHHHHHHHHHHHHHHHHHH
T ss_conf             968999999999999999999747299999879879999988867999998878702-7599999999999999999999


Q ss_pred             HHHHHHHHHHHCC
Q ss_conf             9999999997448
Q gi|254780763|r   84 DLVATKTQEITEG   96 (107)
Q Consensus        84 ~~~~~~m~~~tgg   96 (107)
                      +.++++|+++|||
T Consensus        80 ~~~~~~m~~~tGG   92 (92)
T d1j8ba_          80 ELQKEKMASVTAG   92 (92)
T ss_dssp             HHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHCCC
T ss_conf             9999998755399

 Score =  100 bits (251), Expect = 7e-23
 Identities = 35/103 (33%), Positives = 59/103 (57%)

Query: 1   MSNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLF 60
             NI  +V Q ++ Q   E+++E +     E +AGGG V+V   G+  +  + I   ++ 
Sbjct: 40  GGNINNLVKQAQKXQRDXERVQEELKEKTVEASAGGGAVTVVATGRKDIKEITIKPEVVD 99

Query: 61  EDNVEILEDLIIAAHSDAHKKIEDLVATKTQEITEGLPIPPGL 103
            D+VE L+DLI+AA ++A +K ++ V  +  +IT GL   PGL
Sbjct: 100 PDDVEXLQDLILAAVNEALRKADEXVTAEISKITGGLGGIPGL 142

 Score = 95.2 bits (237), Expect = 3e-21
 Identities = 43/107 (40%), Positives = 61/107 (57%), Gaps = 1/107 (0%)

Query: 1   MSNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLF 60
              +  +  Q ++ Q K +K +E I  LE  G +G G+V + ING +    + ID SL  
Sbjct: 7   KGGLGGLXKQAQQXQEKXQKXQEEIAQLEVTGESGAGLVKITINGAHNCRRIDIDPSLXE 66

Query: 61  EDNVEILEDLIIAAHSDAHKKIEDLVATKTQEITEGLPIPPGLKFPF 107
           +D  E LEDLI AA +DA ++ E+L   K   +T G P+PPG KFPF
Sbjct: 67  DD-KEXLEDLIAAAFNDAVRRAEELQKEKXASVTAGXPLPPGXKFPF 112

 Score = 91.6 bits (228), Expect = 4e-20
 Identities = 21/98 (21%), Positives = 41/98 (41%), Gaps = 2/98 (2%)

Query: 1  MSNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLF 60
            +  ++ G     + +  +++E          +GGG VSV  NG   L  ++ID SLL 
Sbjct: 2  HXDFSQLGGLLDGXKKEFSQLEEKNKDTIHTSKSGGGXVSVSFNGLGELVDLQIDDSLL- 60

Query: 61 EDNVEILEDLIIAAHSDAHKKIEDLVATKTQEITEGLP 98
           ++ E  +  + +A +D +K +E+              
Sbjct: 61 -EDKEAXQIYLXSALNDGYKAVEENRKNLAFNXLGNFA 97

Probab=99.95  E-value=3.4e-27  Score=194.13  Aligned_cols=106  Identities=41%  Similarity=0.662  Sum_probs=103.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCEEEEEEECCCCEEEEEECHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             92179999999999999999999985308999976984999996483074688647882910068999999999999999
Q gi|254780763|r    1 MSNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLFEDNVEILEDLIIAAHSDAHK   80 (107)
Q Consensus         1 M~nm~~llkqaq~mq~~m~~~q~eL~~~~v~g~sg~g~V~V~~~G~~~i~~i~Id~~~l~~~d~e~Ledli~~A~N~A~~   80 (107)
                      |.|+++|+++||+||++++++|++|+..+|+++|++|+|+||+||+++|++|+|||+++. +|++.|+++|++|+|+|++
T Consensus         7 ~~n~~~m~~~aq~~q~~~~~~q~el~~~~~~~~s~dG~V~Vtv~g~g~v~~i~I~~~~~~-~d~e~L~~~i~~A~n~A~~   85 (112)
T 1j8b_A            7 KGGLGGLXKQAQQXQEKXQKXQEEIAQLEVTGESGAGLVKITINGAHNCRRIDIDPSLXE-DDKEXLEDLIAAAFNDAVR   85 (112)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHHHHTTSEEEEEEGGGTEEEEEETTCCEEEEEECGGGGG-SCHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCEEEEEEECCCEEEEEEECHHHHC-CCHHHHHHHHHHHHHHHHH
T ss_conf             769999999999999999999999856099999779769999977827999998677714-7899999999999999999


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             999999999999744899899999998
Q gi|254780763|r   81 KIEDLVATKTQEITEGLPIPPGLKFPF  107 (107)
Q Consensus        81 k~~~~~~~~m~~~tggl~lp~g~~lPf  107 (107)
                      ++++..+++|.++|||+++|++.+|||
T Consensus        86 ~a~~~~~~~~~~l~g~~~lPg~~~~~~  112 (112)
T 1j8b_A           86 RAEELQKEKXASVTAGXPLPPGXKFPF  112 (112)
T ss_dssp             HHHHHHHHHHHHHTCC-----------
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             999999999999857999998999997

Probab=99.94  E-value=3.1e-26  Score=188.05  Aligned_cols=98  Identities=22%  Similarity=0.335  Sum_probs=94.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCEEEEEEECCCCEEEEEECHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             92179999999999999999999985308999976984999996483074688647882910068999999999999999
Q gi|254780763|r    1 MSNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLFEDNVEILEDLIIAAHSDAHK   80 (107)
Q Consensus         1 M~nm~~llkqaq~mq~~m~~~q~eL~~~~v~g~sg~g~V~V~~~G~~~i~~i~Id~~~l~~~d~e~Ledli~~A~N~A~~   80 (107)
                      |+||++||+|||+||++++++|++|++.+|+|+|++|+|+||+||+++|++|+|||+++  +|+++|||+|++|||+|++
T Consensus         2 ~~n~~~mlkqaq~~q~~~~~~q~el~~~~~~g~s~~g~V~V~~~G~~~i~~i~Id~~~l--~d~e~Ledli~~A~N~A~~   79 (99)
T 3f42_A            2 HXDFSQLGGLLDGXKKEFSQLEEKNKDTIHTSKSGGGXVSVSFNGLGELVDLQIDDSLL--EDKEAXQIYLXSALNDGYK   79 (99)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEGGGTEEEEEETTSCEEEEEECGGGG--GCHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEEEECCCEEEEEEECHHHH--CCHHHHHHHHHHHHHHHHH
T ss_conf             98999999999999999999999984739999977988999998795499999897890--8899999999999999999


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             99999999999974489989999
Q gi|254780763|r   81 KIEDLVATKTQEITEGLPIPPGL  103 (107)
Q Consensus        81 k~~~~~~~~m~~~tggl~lp~g~  103 (107)
                      ++++.++++|+++||||   |||
T Consensus        80 ka~~~~~~~m~~~~g~l---pG~   99 (99)
T 3f42_A           80 AVEENRKNLAFNXLGNF---AKL   99 (99)
T ss_dssp             HHHHHHHHHHHHHHC--------
T ss_pred             HHHHHHHHHHHHHHCCC---CCC
T ss_conf             99999999999986575---799

Probab=99.94  E-value=5e-26  Score=186.72  Aligned_cols=103  Identities=34%  Similarity=0.519  Sum_probs=101.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCEEEEEEECCCCEEEEEECHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             92179999999999999999999985308999976984999996483074688647882910068999999999999999
Q gi|254780763|r    1 MSNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSLLFEDNVEILEDLIIAAHSDAHK   80 (107)
Q Consensus         1 M~nm~~llkqaq~mq~~m~~~q~eL~~~~v~g~sg~g~V~V~~~G~~~i~~i~Id~~~l~~~d~e~Ledli~~A~N~A~~   80 (107)
                      +.|+.+|++++|++|++++++|++|+..+|+++|++|+|+||++|+++|++|+|||++++++|++.|+++|++|||+|.+
T Consensus        40 ~~dl~~mlk~aq~~q~~l~~~q~eL~~~~~~g~S~~GlV~Vtv~G~g~v~~I~Idp~~l~~~d~e~L~~lI~~Ain~A~~  119 (143)
T 1ybx_A           40 GGNINNLVKQAQKXQRDXERVQEELKEKTVEASAGGGAVTVVATGRKDIKEITIKPEVVDPDDVEXLQDLILAAVNEALR  119 (143)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHHCEEEEEETTTTEEEEEETTCCEEEEEECGGGCCTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEEEECCCEEEEEEECHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             74799999999999999999999984569999978986999997790589998688984965699999999999999999


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             99999999999974489989999
Q gi|254780763|r   81 KIEDLVATKTQEITEGLPIPPGL  103 (107)
Q Consensus        81 k~~~~~~~~m~~~tggl~lp~g~  103 (107)
                      ++++..+++|.++||||++||||
T Consensus       120 ~a~~~~~e~m~~l~g~l~lppGm  142 (143)
T 1ybx_A          120 KADEXVTAEISKITGGLGGIPGL  142 (143)
T ss_dssp             HHHHHHHHHHHHHC---------
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             99999999999986799999988

Probab=91.73  E-value=0.068  Score=33.61  Aligned_cols=100  Identities=10%  Similarity=-0.001  Sum_probs=72.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCEEEEEEECCCCEEEEEECHHH--CC-CCHHHHH----HHHHHHH
Q ss_conf             217999999999999999999998530899997698499999648307468864788--29-1006899----9999999
Q gi|254780763|r    2 SNIMKMVGQFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSL--LF-EDNVEIL----EDLIIAA   74 (107)
Q Consensus         2 ~nm~~llkqaq~mq~~m~~~q~eL~~~~v~g~sg~g~V~V~~~G~~~i~~i~Id~~~--l~-~~d~e~L----edli~~A   74 (107)
                      +-+..++....+|.++++++|+++.+..-+-..    ++++.......+.|++|...  .+ .-|++.+    .+.+.++
T Consensus        34 ~~~~~~~~dl~~mlk~aq~~q~~l~~~q~eL~~----~~~~g~S~~GlV~Vtv~G~g~v~~I~Idp~~l~~~d~e~L~~l  109 (143)
T 1ybx_A           34 GGFPGFGGNINNLVKQAQKXQRDXERVQEELKE----KTVEASAGGGAVTVVATGRKDIKEITIKPEVVDPDDVEXLQDL  109 (143)
T ss_dssp             ---------CHHHHHHHHHHHHHHHHHHHHHHH----CEEEEEETTTTEEEEEETTCCEEEEEECGGGCCTTCHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC----CEEEEEECCCEEEEEEECCCEEEEEEECHHHCCCCCHHHHHHH
T ss_conf             899998747999999999999999999999845----6999997898699999779058999868898496569999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             999999999999999999744899899999998
Q gi|254780763|r   75 HSDAHKKIEDLVATKTQEITEGLPIPPGLKFPF  107 (107)
Q Consensus        75 ~N~A~~k~~~~~~~~m~~~tggl~lp~g~~lPf  107 (107)
                      +.+|+..+.+.+++.+....+.  +.+||.+|.
T Consensus       110 I~~Ain~A~~~a~~~~~e~m~~--l~g~l~lpp  140 (143)
T 1ybx_A          110 ILAAVNEALRKADEXVTAEISK--ITGGLGGIP  140 (143)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH--HC-------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH--HHCCCCCCC
T ss_conf             9999999999999999999999--867999999

Probab=90.70  E-value=0.057  Score=34.08  Aligned_cols=92  Identities=10%  Similarity=0.111  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHHHHHHEEEEEEECCCEEEEEEECCCCEEEEEECHHH--CC-CCHHHHH---HHHHHHHHHHHHHHHH
Q ss_conf             9999999999999998530899997698499999648307468864788--29-1006899---9999999999999999
Q gi|254780763|r   10 QFKEIQGKMEKMKESITSLEAEGNAGGGMVSVRINGKNMLTGVKIDRSL--LF-EDNVEIL---EDLIIAAHSDAHKKIE   83 (107)
Q Consensus        10 qaq~mq~~m~~~q~eL~~~~v~g~sg~g~V~V~~~G~~~i~~i~Id~~~--l~-~~d~e~L---edli~~A~N~A~~k~~   83 (107)
                      ..++|.++++++|+++....-+-.    .++|+.+...-.++|+++...  .+ .-|.+.+   -+.+-.++-.|+..+.
T Consensus         9 n~~~m~~~aq~~q~~~~~~q~el~----~~~~~~~s~dG~V~Vtv~g~g~v~~i~I~~~~~~~d~e~L~~~i~~A~n~A~   84 (112)
T 1j8b_A            9 GLGGLXKQAQQXQEKXQKXQEEIA----QLEVTGESGAGLVKITINGAHNCRRIDIDPSLXEDDKEXLEDLIAAAFNDAV   84 (112)
T ss_dssp             -CCCHHHHHHHHHHHHHHHHHHHT----TSEEEEEEGGGTEEEEEETTCCEEEEEECGGGGGSCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHH----CEEEEEEECCCEEEEEEECCCEEEEEEECHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999999985----6099999779769999977827999998677714789999999999999999


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             999999999744899899999998
Q gi|254780763|r   84 DLVATKTQEITEGLPIPPGLKFPF  107 (107)
Q Consensus        84 ~~~~~~m~~~tggl~lp~g~~lPf  107 (107)
                      +.+++.+......  +.+|++||+
T Consensus        85 ~~a~~~~~~~~~~--l~g~~~lPg  106 (112)
T 1j8b_A           85 RRAEELQKEKXAS--VTAGXPLPP  106 (112)
T ss_dssp             HHHHHHHHHHHHH--HTCC-----
T ss_pred             HHHHHHHHHHHHH--HHCCCCCCC
T ss_conf             9999999999999--857999998