254780951

254780951

hypothetical protein CLIBASIA_04250

GeneID in NCBI database:8209973Locus tag:CLIBASIA_04250
Protein GI in NCBI database:254780951Protein Accession:YP_003065364.1
Gene range:-(946575, 946724)Protein Length:49aa
Gene description:hypothetical protein
COG prediction:none
KEGG prediction:hypothetical protein
SEED prediction:hypothetical protein
Pathway involved in KEGG:not defined
Subsystem involved in SEED:- none -
sequencesequence profile

Prediction of Local Sequence Properties

SourceSummaryResult
scaler
NCBI Databasesequence
PSIPREDsecondary structure
SSPROsecondary structure
DISEMBLcoil and loop
DISEMBLflexible loop
SEGlow complexity
DISOPREDdisordered
DISEMBLmissing residues
DISPROdisordered
TMHMM1 TM-Helix
TOPPRED1 TM-Helix
HMMTOP1 TM-Helix
MEMSATnone TM-Helix
MEMSAT_SVMnone TM-Helix
PHOBIUS1 TM-Helix
SignalP_HMMyes
SignalP_NNyes
COILScoiled coil
  
--------10--------20--------30--------40--------5
MNTRIIGTVLMLAISPLLFSCSSKKGGEKKGAEKKTSAPLKNGKNQSRR
ccHHHHHHHHHHHHHHHHHHcccccccHHHccHHHcccccccccHHccc
cccHHHHHHHHHHHcHHHEEccccccccccccccccccccccccccccc
MNTRIIGTVLMLAISPllfscsskkggekkgaekktsaplkngknqsrr
MNTRIIGTVLMLAISPLLfscsskkggekkgaekktsaplkngknqsrr
MNTRIIGTVLMLAISPLLFSCSSkkggekkgaekkTSAPLKNGKNQSRR
**TRIIGTVLMLAISPLL*******************************
MNTRIIGTVLMLAISPLLFSCSSK*************************
*NTRIIGTVLMLAISPLLFSCS***************************
ooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
xxxHHHHHHHHHHHHHHHHHHHHxxxxxxxxxxxxxxxxxxxxxxxxxx
ooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSiihhhhhhhhhhhhhhhhooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooo
MNTRIIGTVLMLAISPLLFSCSSKKGGEKKGAEKKTSAPLKNGKNQSRR

Close Homologs Detected by BLAST or PSI-BLAST

Homolog within the Genome Detected by BLAST

No hits with e-value below 0.05

Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations

No hits with e-value below 0.005 within the first 2 iteration


Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch

Conserved Domains in CDD Database Detected by RPS-BLAST

No hit with e-value below 0.005

Conserved Domains in CDD Database Detected by HHsearch

IdentityAlignment graphLength Definition Probability
Target 49 hypothetical protein CLIBASIA_04250 [Candidatus Liberib
TIGR01781 463 Trep_dent_lipo Treponema denticola clustered lipoprotei 90.31
>TIGR01781 Trep_dent_lipo Treponema denticola clustered lipoprotein; InterPro: IPR010103 This entry represents a family of six predicted lipoproteins from a region of about 20 tandemly arranged genes in the Treponema denticola genome Back     alignment and domain information

Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch

Homologous Structures Detected by PSI-BLAST against Nonredundant Database

No homologous structure with e-value below 0.005

Homologous Structures in PDB70 Database Detected by RPS-BLAST

No hit with e-value below 0.005

Homologous Structures in PDB70 Database Detected by HHsearch

No hit with probability above 90.00


Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch

Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST

No hit with e-value below 0.005

Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch

No hit with probability above 90.00

Homologous Domains in MMDB70 Database Detected by RPS-BLAST

No hit with e-value below 0.005

Homologous Domains in MMDB70 Database Detected by HHsearch

No hit with probability higher than 90.00