254780955

hypothetical protein CLIBASIA_04270

GeneID in NCBI database:	8209977	Locus tag:	CLIBASIA_04270
Protein GI in NCBI database:	254780955	Protein Accession:	YP_003065368.1
Gene range:	-(951807, 952421)	Protein Length:	204aa
Gene description:	hypothetical protein
COG prediction:	[S] Uncharacterized protein conserved in bacteria
KEGG prediction:	hypothetical protein; K09985 hypothetical protein
SEED prediction:	hypothetical protein
Pathway involved in KEGG:	not defined
Subsystem involved in SEED:	- none -
sequence	sequence profile

Prediction of Local Sequence Properties

Source	Summary	Result

	scaler
NCBI Database	sequence
PSIPRED	secondary structure
SSPRO	secondary structure
DISEMBL	coil and loop
DISEMBL	flexible loop
SEG	low complexity
DISOPRED	disordered
DISEMBL	missing residues
DISPRO	disordered
TMHMM	none TM-Helix
TOPPRED	none TM-Helix
HMMTOP	none TM-Helix
MEMSAT	none TM-Helix
MEMSAT_SVM	none TM-Helix
PHOBIUS	none TM-Helix
SignalP_HMM	no
SignalP_NN	no
COILS	coiled coil
70% MSA	conservation map
90% MSA	conservation map

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200----

MVSLWNFFSSRWQWFFIIKWIDTLMNYDHIRYDILAKEALRGLVKVVLSEVASIGSLPGEHHFYITFATNARGVRISQNLRKNYPEKMTIVIQNQFWDLKVLDNHFEVGLSFSNVPERLVIPFNAIKGFYDPSVNFELEFDVHIEHIEEKLEGGNTGKVLTSPDNFDKNQTNSVSQDSSKKKSTKKQNKNKMASVISLDNFRKK

ccHHHHHHcccEEEEEEEEHHccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEEcccccccccHHHHHHccccEEEEEEEEEccEEEEccEEEEEEEEcccccEEEEcHHHHHHHccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEHHHccc

ccccccccccHHHHHHcHHHHHHccHcccccHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEccccccccccHHHHHHccccEEEEEEEcccccEEccccEEEEEEccccccEEEEcHHHHHHccccccccEEEEcccccccHHccccccccccccccccccccccccccccccccccccccccccccEEEEHHHHccc

MVSLWNFFSSRWQWFFIIKWIDTLMNYDHIRYDILAKEALRGLVKVVLSEVAsigslpgehhFYITFatnargvrisqnlrknypEKMTIVIQNQFWDLKVLDNHFevglsfsnvperlvipfnaikgfydpsvnfeleFDVHIEHIEEkleggntgkvltspdnfdknqtnsvsqdsskkkstkkQNKNKMASVISLDNFRKK

mvslwnffSSRWQWFFIIKWIDTLMNYDHIRYDILAKEALRGLVKVVLSEVASIGSLPGEHHFYITFATNARGVRISQNLRKNYPEKMTIVIQNQFWDLKVLDNHFEVGLSFSNVPERLVIPFNAIKGFYDPSVNFELEFDVHIEHIEEKLEGGNTGKVLtspdnfdknqtnsvsqdsskkkstkkqnknkmasvisldnfrkk

**SLWNFFSSRWQWFFIIKWIDTLMNYDHIRYDILAKEALRGLVKVVLSEVASIGSLPGEHHFYITFATNARGVRISQNLRKNYPEKMTIVIQNQFWDLKVLDNHFEVGLSFSNVPERLVIPFNAIKGFYDPSVNFELEFDV*******************************************************LDNFRKK

***LWNFFSSRWQWFFIIKWIDTLMNYDHIRYDILAKEALRGLVKVVLSEVASIGSLPGEHHFYITFATNARGVRISQNLRKNYPEKMTIVIQNQFWDLKVLDNHFEVGLSFSNVPERLVIPFNAIKGFYDPSVNFELEFDVHIE************************************************S*ISLDNFRKK

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Close Homologs Detected by BLAST or PSI-BLAST

Homolog within the Genome Detected by BLAST

Original result of BLAST against C. L. asiaticus genome

No hits with e-value below 0.05

Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations

Original result of PSI-BLAST first 2 iterations

Identity	Alignment graph	Length	Definition	Round	E-value
Target		204	hypothetical protein CLIBASIA_04270 [Candidatus Liberib
315122503		172	hypothetical protein CKC_03775 [Candidatus Liberibacter	1	9e-63
241205507		171	hypothetical protein Rleg_2803 [Rhizobium leguminosarum	1	4e-54
218507824		171	hypothetical protein RetlB5_09535 [Rhizobium etli Brasi	1	1e-53
116253000		171	hypothetical protein RL3257 [Rhizobium leguminosarum bv	1	1e-53
86358404		171	hypothetical protein RHE_CH02800 [Rhizobium etli CFN 42	1	2e-53
218463519		171	hypothetical protein RetlK5_30634 [Rhizobium etli Kim 5	1	2e-53
209550126		171	hypothetical protein Rleg2_2544 [Rhizobium leguminosaru	1	3e-53
190892529		171	hypothetical protein RHECIAT_CH0002944 [Rhizobium etli	1	3e-53
222149085		169	hypothetical protein Avi_2824 [Agrobacterium vitis S4]	1	1e-52
222086398		169	hypothetical protein Arad_2936 [Agrobacterium radiobact	1	5e-52

>gi\|315122503\|ref\|YP_004062992.1\| hypothetical protein CKC_03775 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 172	Back alignment and organism information

 Score =  243 bits (621), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 120/165 (72%), Positives = 136/165 (82%), Gaps = 1/165 (0%)

Query: 25  MNYDHIRYDILAKEALRGLVKVVLSEVASIGSLPGEHHFYITFATNARGVRISQNLRKNY 84
           MN+DHIRYDIL KEALRGLVK VL+E A+IGSLPG+HHFYITFATNARGVRISQN++K Y
Sbjct: 1   MNHDHIRYDILTKEALRGLVKTVLAETAAIGSLPGDHHFYITFATNARGVRISQNIKKIY 60

Query: 85  PEKMTIVIQNQFWDLKVLDNHFEVGLSFSNVPERLVIPFNAIKGFYDPSVNFELEFDVHI 144
           PEK+TIVIQNQFWDLKV DNHFEVGLSFSNVPE L IPFNAI+GFYDPSVNFELEFDVH+
Sbjct: 61  PEKITIVIQNQFWDLKVFDNHFEVGLSFSNVPELLSIPFNAIQGFYDPSVNFELEFDVHL 120

Query: 145 EHIEEKLEGGNTGKVLTSPDNFDKNQTNSVSQDSSKKKSTKKQNK 189
              EE+LE    G+VL  P+NF+K+Q+    +        KKQ K
Sbjct: 121 YDAEEELE-NKKGEVLGLPENFNKDQSPDSLEKLPTDNKEKKQKK 164

Species: Candidatus Liberibacter solanacearum
Genus: Candidatus Liberibacter
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

>gi\|241205507\|ref\|YP_002976603.1\| hypothetical protein Rleg_2803 [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 171	Back alignment and organism information

>gi\|218507824\|ref\|ZP_03505702.1\| hypothetical protein RetlB5_09535 [Rhizobium etli Brasil 5] Length = 171	Back alignment and organism information

>gi\|116253000\|ref\|YP_768838.1\| hypothetical protein RL3257 [Rhizobium leguminosarum bv. viciae 3841] Length = 171	Back alignment and organism information

>gi\|86358404\|ref\|YP_470296.1\| hypothetical protein RHE_CH02800 [Rhizobium etli CFN 42] Length = 171	Back alignment and organism information

>gi\|218463519\|ref\|ZP_03503610.1\| hypothetical protein RetlK5_30634 [Rhizobium etli Kim 5] Length = 171	Back alignment and organism information

>gi\|209550126\|ref\|YP_002282043.1\| hypothetical protein Rleg2_2544 [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 171	Back alignment and organism information

>gi\|190892529\|ref\|YP_001979071.1\| hypothetical protein RHECIAT_CH0002944 [Rhizobium etli CIAT 652] Length = 171	Back alignment and organism information

>gi\|222149085\|ref\|YP_002550042.1\| hypothetical protein Avi_2824 [Agrobacterium vitis S4] Length = 169	Back alignment and organism information

>gi\|222086398\|ref\|YP_002544932.1\| hypothetical protein Arad_2936 [Agrobacterium radiobacter K84] Length = 169	Back alignment and organism information

Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch

Conserved Domains in CDD Database Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Original result of RPS-BLASTagainst CDD database part II

Identity	Alignment graph	Length	Definition	E-value
Target		204	hypothetical protein CLIBASIA_04270 [Candidatus Liberib
pfam04386		152	pfam04386, SspB, Stringent starvation protein B	5e-44
COG3814		157	COG3814, COG3814, Uncharacterized protein conserved in	7e-47

>gnl\|CDD\|146826 pfam04386, SspB, Stringent starvation protein B	Back alignment and domain information

>gnl\|CDD\|33607 COG3814, COG3814, Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

Conserved Domains in CDD Database Detected by HHsearch

Original result of HHsearch against CDD database

Identity	Alignment graph	Length	Definition	Probability
Target		204	hypothetical protein CLIBASIA_04270 [Candidatus Liberib
pfam07031		153	consensus	100.0
COG3814		157	Uncharacterized protein conserved in bacteria [Function	100.0
pfam04386		152	SspB Stringent starvation protein B. Escherichia coli s	100.0
PRK11798		140	ClpXP protease specificity-enhancing factor; Provisiona	98.01
COG2969		155	SspB Stringent starvation protein B [General function p	95.85

>pfam07031 consensus	Back alignment and domain information

Probab=100.00  E-value=0  Score=444.26  Aligned_cols=153  Identities=52%  Similarity=0.851  Sum_probs=131.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHCCCEEEEEEEEEECCEEECCCEEEEE
Q ss_conf             49899999999999999999999708999874699998458888775989996397537998431121807645479999
Q gi|254780955|r   30 IRYDILAKEALRGLVKVVLSEVASIGSLPGEHHFYITFATNARGVRISQNLRKNYPEKMTIVIQNQFWDLKVLDNHFEVG  109 (204)
Q Consensus        30 i~Y~~l~~~Alr~Vvr~~L~~v~~~g~LpG~hHfyItF~T~~~gV~ip~~L~~~yP~emTIVlQhqf~dL~V~~~~FsV~  109 (204)
T Consensus         1 i~Y~~l~~~Alr~vv~~~L~~v~~~G-lpg~hHfyItF~T~~~gV~ip~~L~~~YP~eMTIVlQhqf~dL~V~~~~FsV~   79 (153)
T pfam07031         1 IRYDKLVQDALRGVVRKVLTDVAKEG-LPGEHHFYITFLTNAPGVILPDRLKERYPEEMTIVLQHQFWDLNVTEDGFSVT   79 (153)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCEEEEEEECCCCCCCCCHHHHHHCCCCCEEEEEEEECCCEEECCCEEEE
T ss_conf             98799999999999999999999729-99873799999659999668999996498613998632232415506836999


Q ss_pred             EEECCEEEEEEEEHHHHEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             98498766899844242023067753035603467665433444565444445655664334444444555665556665
Q gi|254780955|r  110 LSFSNVPERLVIPFNAIKGFYDPSVNFELEFDVHIEHIEEKLEGGNTGKVLTSPDNFDKNQTNSVSQDSSKKKSTKKQNK  189 (204)
Q Consensus       110 LsF~g~~e~L~IPf~AIt~F~DPSV~FgLqF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (204)
T Consensus        80 LsF~~~~e~l~IPf~aI~~F~DPsv~FgL~F~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~  141 (153)
T pfam07031        80 LSFGGVPERLTIPFSAITKFVDPSVNFGLQFEQQENDDDEEEPDEDNDD------------------PDDEAPSPAPLTP  141 (153)
T ss_pred             EEECCEEEEEEEEHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCC------------------CCCCCCCCCCCCC
T ss_conf             9849904678952688410128887757875576676556667777676------------------5567888878888


Q ss_pred             CCCCCEEEEEEC
Q ss_conf             677728983100
Q gi|254780955|r  190 NKMASVISLDNF  201 (204)
Q Consensus       190 ~~~aeVVSLD~F  201 (204)
T Consensus       142 ~~~aeVVSLD~F  153 (153)
T pfam07031       142 AKGANVVSLDAF  153 (153)
T ss_pred             CCCCCEEECCCC
T ss_conf             888868857789

>COG3814 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

Probab=100.00  E-value=0  Score=414.08  Aligned_cols=157  Identities=62%  Similarity=1.009  Sum_probs=134.0

Q ss_pred             CHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHCCCEEEEEEEEEECCEEECCC
Q ss_conf             02210498999999999999999999997089998746999984588887759899963975379984311218076454
Q gi|254780955|r   25 MNYDHIRYDILAKEALRGLVKVVLSEVASIGSLPGEHHFYITFATNARGVRISQNLRKNYPEKMTIVIQNQFWDLKVLDN  104 (204)
Q Consensus        25 M~~Dli~Y~~l~~~Alr~Vvr~~L~~v~~~g~LpG~hHfyItF~T~~~gV~ip~~L~~~yP~emTIVlQhqf~dL~V~~~  104 (204)
T Consensus         1 m~qd~i~Y~~laqealrgvvkkvL~kva~~g-Lp~dhh~yItf~T~apgV~~~s~lk~kYPeqmTIVlQ~Qfwdl~v~dt   79 (157)
T COG3814           1 MGQDHIRYDILAQEALRGVVKKVLAKVAATG-LPGDHHFYITFLTGAPGVRIPSKLKQKYPEQMTIVLQHQFWDLKVTDT   79 (157)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCEEEEEEECCCCCEECCHHHHHHCCCCEEEEEEEEEECCEECCC
T ss_conf             9522478999999999999999999875328-998737999996389823444888763850359976545401210246


Q ss_pred             EEEEEEEECCEEEEEEEEHHHHEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             79999984987668998442420230677530356034676654334445654444456556643344444445556655
Q gi|254780955|r  105 HFEVGLSFSNVPERLVIPFNAIKGFYDPSVNFELEFDVHIEHIEEKLEGGNTGKVLTSPDNFDKNQTNSVSQDSSKKKST  184 (204)
Q Consensus       105 ~FsV~LsF~g~~e~L~IPf~AIt~F~DPSV~FgLqF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (204)
T Consensus        80 gFsv~lsF~~vpe~l~iPf~Al~~FyDpsvnf~LeF~~~~~~~e~~e~-------~~~p~~---------------~~~~  137 (157)
T COG3814          80 GFSVTLSFSGVPEKLYIPFDALRGFYDPSVNFELEFDVSLNIEEEAEP-------EAEPSN---------------KAKS  137 (157)
T ss_pred             CEEEEEEECCCCEEEEEEHHHHHHHCCCCCCEEEEECCCCCCCCCCCC-------CCCCCC---------------CCCC
T ss_conf             248998857963079962588550148876579997442255445676-------555444---------------2236


Q ss_pred             CCCCCCCCCCEEEEEECCCC
Q ss_conf             56665677728983100269
Q gi|254780955|r  185 KKQNKNKMASVISLDNFRKK  204 (204)
Q Consensus       185 ~~~~~~~~aeVVSLD~FRKK  204 (204)
T Consensus       138 ~at~~~~~p~VvsLD~FRkk  157 (157)
T COG3814         138 GATSDSEGPNVVSLDAFRKK  157 (157)
T ss_pred             CCCCCCCCCCEEEHHHHHCC
T ss_conf             66577889848873774049

>pfam04386 SspB Stringent starvation protein B	Back alignment and domain information

Probab=100.00  E-value=1.6e-42  Score=297.14  Aligned_cols=120  Identities=44%  Similarity=0.757  Sum_probs=114.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHCCCEEEEEEEEEECCEEECCCEEEEE
Q ss_conf             49899999999999999999999708999874699998458888775989996397537998431121807645479999
Q gi|254780955|r   30 IRYDILAKEALRGLVKVVLSEVASIGSLPGEHHFYITFATNARGVRISQNLRKNYPEKMTIVIQNQFWDLKVLDNHFEVG  109 (204)
Q Consensus        30 i~Y~~l~~~Alr~Vvr~~L~~v~~~g~LpG~hHfyItF~T~~~gV~ip~~L~~~yP~emTIVlQhqf~dL~V~~~~FsV~  109 (204)
T Consensus         1 ~~y~~~~~~~lRav~~w~L~~~~~~g-ld~~~~pyI~~~t~~~gV~vP~~l~~~~~~~mlnV~~~a~~~L~v~~d~~sf~   79 (152)
T pfam04386         1 ITYDSLRPYALRAVYRWVLTDVAKEG-LDNDHTPYITFDTTAPGVQVPDELVERYPQIMLNVLQHAFWDLEVGNDGFSFN   79 (152)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCEEEEEEEECCCCCCCCHHHHHCCCCEEEEECHHHHHCEEECCCEEEEE
T ss_conf             97788899999999999998765348-89998379999908999187899984399479995477760516627889999


Q ss_pred             EEECCEEEEEEEEHHHHEEEECCCCCEEEEECCCCCCCCCC
Q ss_conf             98498766899844242023067753035603467665433
Q gi|254780955|r  110 LSFSNVPERLVIPFNAIKGFYDPSVNFELEFDVHIEHIEEK  150 (204)
Q Consensus       110 LsF~g~~e~L~IPf~AIt~F~DPSV~FgLqF~~~~~~~~~~  150 (204)
T Consensus        80 ~rF~G~~~~i~iP~~Ai~~i~~~e~g~Gl~F~~~~~~~~~~  120 (152)
T pfam04386        80 LRFGGVPERLYVPFAAILAFYDPENGFGLQFEPEEADEDEE  120 (152)
T ss_pred             EEECCEEEEEEEEHHHEEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf             99899307999744771466666678652058988777777

Escherichia coli stringent starvation protein B (SspB), is thought to enhance the specificity of degradation of tmRNA-tagged proteins by the ClpXP protease. The tmRNA tag, also known as ssrA, is an 11-aa peptide added to the C terminus of proteins stalled during translation, targets proteins for degradation by ClpXP and ClpAP. SspB a cytoplasmic protein that specifically binds to residues 1-4 and 7 of the tag. Binding of SspB enhances degradation of tagged proteins by ClpX, and masks sequence elements important for ClpA interactions, inhibiting degradation by ClpA. However, more recent work has cast doubt on the importance of SspB in wild-type cells. SspB is encoded in an operon whose synthesis is stimulated by carbon, amino acid, and phosphate starvation. SspB may play a special role during nutrient stress, for example by ensuring rapid degradation of the products of stalled translation, without causing a global increase in degradation of

>PRK11798 ClpXP protease specificity-enhancing factor; Provisional	Back alignment and domain information

>COG2969 SspB Stringent starvation protein B [General function prediction only]	Back alignment and domain information

Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch

Homologous Structures Detected by PSI-BLAST against Nonredundant Database

Original result of PSI-BLAST

Identity	Alignment graph	Length	Definition	E-value
Target		204	hypothetical protein CLIBASIA_04270 [Candidatus Liberib
2nys_A		176	X-Ray Crystal Structure Of Protein Agr_c_3712 From	1e-53
2qas_A		157	Crystal Structure Of Caulobacter Crescentus Sspb Or	4e-40
2qaz_A		128	Structure Of C. Crescentus Sspb Ortholog Length = 1	9e-40

>gi|119390693|pdb|2NYS|A Chain A, X-Ray Crystal Structure Of Protein Agr_c_3712 From Agrobacterium Tumefaciens. Northeast Structural Genomics Consortium Target Atr88. Length = 176

Back alignment and structure

 Score =  213 bits (542), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 96/178 (53%), Positives = 122/178 (68%), Gaps = 13/178 (7%)

Query: 27  YDHIRYDILAKEALRGLVKVVLSEVASIGSLPGEHHFYITFATNARGVRISQNLRKNYPE 86
            DHIRYDILA++ALRG+++ VL EVA+ G LPG+HHF+ITF T A GVRISQ+L+  Y E
Sbjct: 3   QDHIRYDILAQDALRGVIRKVLGEVAATGRLPGDHHFFITFLTGAPGVRISQHLKSKYAE 62

Query: 87  KMTIVIQNQFWDLKVLDNHFEVGLSFSNVPERLVIPFNAIKGFYDPSVNFELEFDVHIEH 146
           + TIVIQ+QFWD KV +  FE+GLSFS+ PE+LVIP+NAI+GFYDPSVNFELEFDV +  
Sbjct: 63  QXTIVIQHQFWDXKVTETGFEIGLSFSDTPEKLVIPYNAIRGFYDPSVNFELEFDVPLAK 122

Query: 147 IEEKLEGGNTGKVLTSPDNFDKNQTNSVSQDSSKKKSTKKQNKNKMASVISLDNFRKK 204
            EE  E   T   ++              +     ++ K   + K  SV+SLD FRKK
Sbjct: 123 EEEXEEAEITAYPVS-------------HEAKPASETPKSGEEKKEGSVVSLDAFRKK 167

PyMOL of 2nys

>gi|158429805|pdb|2QAZ|A Chain A, Structure Of C. Crescentus Sspb Ortholog Length = 128

Back alignment and structure

Homologous Structures in PDB70 Database Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

Identity	Alignment graph	Length	Definition	E-value
Target		204	hypothetical protein CLIBASIA_04270 [Candidatus Liberib
2nys_A		176	AGR_C_3712P; SSPB, stringent starvation protein B, NESG	6e-48
2qas_A		157	SSPB, hypothetical protein; SSPB, adaptor, CLPX, unknow	2e-45
1ou9_A		129	Stringent starvation protein B homolog; SSRA peptide-bi	2e-14

>2nys_A AGR_C_3712P; SSPB, stringent starvation protein B, NESG, ATR88, structural genomics, PSI-2, protein structure initiative; 2.70A {Agrobacterium tumefaciens str} SCOP: b.136.1.2 Length = 176	Back alignment and structure

 Score =  185 bits (471), Expect = 6e-48
 Identities = 96/180 (53%), Positives = 123/180 (68%), Gaps = 13/180 (7%)

Query: 25  MNYDHIRYDILAKEALRGLVKVVLSEVASIGSLPGEHHFYITFATNARGVRISQNLRKNY 84
           M  DHIRYDILA++ALRG+++ VL EVA+ G LPG+HHF+ITF T A GVRISQ+L+  Y
Sbjct: 1   MGQDHIRYDILAQDALRGVIRKVLGEVAATGRLPGDHHFFITFLTGAPGVRISQHLKSKY 60

Query: 85  PEKMTIVIQNQFWDLKVLDNHFEVGLSFSNVPERLVIPFNAIKGFYDPSVNFELEFDVHI 144
            E+MTIVIQ+QFWD+KV +  FE+GLSFS+ PE+LVIP+NAI+GFYDPSVNFELEFDV +
Sbjct: 61  AEQMTIVIQHQFWDMKVTETGFEIGLSFSDTPEKLVIPYNAIRGFYDPSVNFELEFDVPL 120

Query: 145 EHIEEKLEGGNTGKVLTSPDNFDKNQTNSVSQDSSKKKSTKKQNKNKMASVISLDNFRKK 204
              EE              +  +        +     ++ K   + K  SV+SLD FRKK
Sbjct: 121 AKEEE-------------MEEAEITAYPVSHEAKPASETPKSGEEKKEGSVVSLDAFRKK 167

PyMOL of 2nys

>1ou9_A Stringent starvation protein B homolog; SSRA peptide-binding protein, homodimer, transport protein; 1.80A {Haemophilus influenzae} SCOP: b.136.1.1 PDB: 1oul_A 1zsz_C Length = 129	Back alignment and structure

Homologous Structures in PDB70 Database Detected by HHsearch

Original result of HHsearch against PDB70 database

Identity	Alignment graph	Length	Definition	Probability
Target		204	hypothetical protein CLIBASIA_04270 [Candidatus Liberib
2nys_A		176	AGR_C_3712P; SSPB, stringent starvation protein B, NESG	100.0
2qas_A		157	SSPB, hypothetical protein; SSPB, adaptor, CLPX, unknow	100.0
1yfn_A		118	Stringent starvation protein B; protein-peptide complex	98.44
1ou8_A		111	Stringent starvation protein B homolog; peptide-binding	98.43
1ou9_A		129	Stringent starvation protein B homolog; SSRA peptide-bi	98.32

>2nys_A AGR_C_3712P; SSPB, stringent starvation protein B, NESG, ATR88, structural genomics, PSI-2, protein structure initiative; 2.70A {Agrobacterium tumefaciens str} SCOP: b.136.1.2	Back alignment and structure

Probab=100.00  E-value=0  Score=430.82  Aligned_cols=167  Identities=59%  Similarity=0.958  Sum_probs=140.7

Q ss_pred             CHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHCCCEEEEEEEEEECCEEECCC
Q ss_conf             02210498999999999999999999997089998746999984588887759899963975379984311218076454
Q gi|254780955|r   25 MNYDHIRYDILAKEALRGLVKVVLSEVASIGSLPGEHHFYITFATNARGVRISQNLRKNYPEKMTIVIQNQFWDLKVLDN  104 (204)
Q Consensus        25 M~~Dli~Y~~l~~~Alr~Vvr~~L~~v~~~g~LpG~hHfyItF~T~~~gV~ip~~L~~~yP~emTIVlQhqf~dL~V~~~  104 (204)
                      |++|+|+|++|+++|||||||++|+.|+++|+|||+|||||||+|++|||+||+||+++||+|||||||||||||.|+++
T Consensus         1 m~~d~i~Y~~l~~~alr~vvr~~L~~v~~~G~lpg~hHfYItf~t~~pGV~vP~~l~~~yp~emtiVlq~qf~dL~V~~d   80 (176)
T 2nys_A            1 MGQDHIRYDILAQDALRGVIRKVLGEVAATGRLPGDHHFFITFLTGAPGVRISQHLKSKYAEQMTIVIQHQFWDMKVTET   80 (176)
T ss_dssp             --CCSSCHHHHHHHHHHHHHHHHHHHHHHHSSCCTTCCEEEEEESSSTTCBCCHHHHHHSSSEEEEEESSSCEEEEECSS
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHCCCCCEEEECHHHHCCEEEECC
T ss_conf             98450479999999999999999999998297998866999997699995889999862984148964555359088546


Q ss_pred             EEEEEEEECCEEEEEEEEHHHHEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             79999984987668998442420230677530356034676654334445654444456556643344444445556655
Q gi|254780955|r  105 HFEVGLSFSNVPERLVIPFNAIKGFYDPSVNFELEFDVHIEHIEEKLEGGNTGKVLTSPDNFDKNQTNSVSQDSSKKKST  184 (204)
Q Consensus       105 ~FsV~LsF~g~~e~L~IPf~AIt~F~DPSV~FgLqF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (204)
                      +|||+|||||+|++|+|||+||++|+||||+|||+|+.....+.+..+.....             ...........++.
T Consensus        81 ~fsf~lrF~Gvp~~l~IP~~AI~af~dpevgfGL~F~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~  147 (176)
T 2nys_A           81 GFEIGLSFSDTPEKLVIPYNAIRGFYDPSVNFELEFDVPLAKEEEMEEAEITA-------------YPVSHEAKPASETP  147 (176)
T ss_dssp             EEEEEEEETTEEEEEEEEGGGEEEEEEGGGTEEEECCCC-----------------------------------------
T ss_pred             EEEEEEEECCEEEEEEEEHHHEEEEECCCCCCCEECCCCCCCCCCCCCCCCCC-------------CCCCCCCCCCCCCC
T ss_conf             58999998996079998757801656767786223288665444445566667-------------77764456777788


Q ss_pred             CCCCCCCCCCEEEEEECCCC
Q ss_conf             56665677728983100269
Q gi|254780955|r  185 KKQNKNKMASVISLDNFRKK  204 (204)
Q Consensus       185 ~~~~~~~~aeVVSLD~FRKK  204 (204)
                      ++..++++++|||||+||||
T Consensus       148 ~~~~~k~~~~VVsld~frkK  167 (176)
T 2nys_A          148 KSGEEKKEGSVVSLDAFRKK  167 (176)
T ss_dssp             --------------------
T ss_pred             CCCCCCCCCCEEEECCCCCC
T ss_conf             88777888988970310268

PyMOL of 2nys

>1yfn_A Stringent starvation protein B; protein-peptide complex, SSPB, RSEA, protein binding; 1.80A {Escherichia coli} SCOP: b.136.1.1 PDB: 1ox9_A 1ox8_A	Back alignment and structure

>1ou8_A Stringent starvation protein B homolog; peptide-binding pocket, protein-peptide complex, homodimer, transport protein; 1.60A {Haemophilus influenzae} SCOP: b.136.1.1 PDB: 1zsz_A 1twb_A 1zsz_B	Back alignment and structure

>1ou9_A Stringent starvation protein B homolog; SSRA peptide-binding protein, homodimer, transport protein; 1.80A {Haemophilus influenzae} SCOP: b.136.1.1 PDB: 1oul_A 1zsz_C	Back alignment and structure

Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch

Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

Identity	Alignment graph	Length	Definition	E-value
Target		204	hypothetical protein CLIBASIA_04270 [Candidatus Liberib
d2nysa1		117	b.136.1.2 (A:3-119) Uncharacterized protein AGR_C_3712p	7e-48

>d2nysa1 b.136.1.2 (A:3-119) Uncharacterized protein AGR_C_3712p {Agrobacterium tumefaciens [TaxId: 358]} Length = 117	Back information, alignment and structure


class: All beta proteins
fold: SspB-like
superfamily: SspB-like
family: AGR C 3712p-like
domain: Uncharacterized protein AGR C 3712p
species: Agrobacterium tumefaciens [TaxId: 358]

 Score =  184 bits (468), Expect = 7e-48
 Identities = 82/115 (71%), Positives = 101/115 (87%)

Query: 28  DHIRYDILAKEALRGLVKVVLSEVASIGSLPGEHHFYITFATNARGVRISQNLRKNYPEK 87
           DHIRYDILA++ALRG+++ VL EVA+ G LPG+HHF+ITF T A GVRISQ+L+  Y E+
Sbjct: 2   DHIRYDILAQDALRGVIRKVLGEVAATGRLPGDHHFFITFLTGAPGVRISQHLKSKYAEQ 61

Query: 88  MTIVIQNQFWDLKVLDNHFEVGLSFSNVPERLVIPFNAIKGFYDPSVNFELEFDV 142
           MTIVIQ+QFWD+KV +  FE+GLSFS+ PE+LVIP+NAI+GFYDPSVNFELEFDV
Sbjct: 62  MTIVIQHQFWDMKVTETGFEIGLSFSDTPEKLVIPYNAIRGFYDPSVNFELEFDV 116

PyMOL of d2nysa1

Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

Identity	Alignment graph	Length	Definition	Probability
Target		204	hypothetical protein CLIBASIA_04270 [Candidatus Liberib
d2nysa1		117	Uncharacterized protein AGR_C_3712p {Agrobacterium tume	100.0
d1yfna1		108	Stringent starvation protein B, SspB {Escherichia coli	98.47
d1ou8a_		106	Stringent starvation protein B, SspB {Haemophilus influ	98.37

>d2nysa1 b.136.1.2 (A:3-119) Uncharacterized protein AGR_C_3712p {Agrobacterium tumefaciens [TaxId: 358]}	Back information, alignment and structure

class: All beta proteins
fold: SspB-like
superfamily: SspB-like
family: AGR C 3712p-like
domain: Uncharacterized protein AGR C 3712p
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=100.00  E-value=0  Score=404.78  Aligned_cols=116  Identities=71%  Similarity=1.221  Sum_probs=114.3

Q ss_pred             HHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHCCCEEEEEEEEEECCEEECCCEE
Q ss_conf             21049899999999999999999999708999874699998458888775989996397537998431121807645479
Q gi|254780955|r   27 YDHIRYDILAKEALRGLVKVVLSEVASIGSLPGEHHFYITFATNARGVRISQNLRKNYPEKMTIVIQNQFWDLKVLDNHF  106 (204)
Q Consensus        27 ~Dli~Y~~l~~~Alr~Vvr~~L~~v~~~g~LpG~hHfyItF~T~~~gV~ip~~L~~~yP~emTIVlQhqf~dL~V~~~~F  106 (204)
                      +|+|+|++|+++|||+|||++|+.|+++|+|||+|||||||+|++|||+||+|||++||+|||||||||||||+|++++|
T Consensus         1 ~d~i~Y~~lv~~alr~Vvr~~L~~v~~~G~Lpg~hHfyITF~T~~~gV~ip~~L~~~YPeEMTIVlQhqF~dL~V~~~~F   80 (117)
T d2nysa1           1 QDHIRYDILAQDALRGVIRKVLGEVAATGRLPGDHHFFITFLTGAPGVRISQHLKSKYAEQMTIVIQHQFWDMKVTETGF   80 (117)
T ss_dssp             CCSSCHHHHHHHHHHHHHHHHHHHHHHHSSCCTTCCEEEEEESSSTTCBCCHHHHHHSSSEEEEEESSSCEEEEECSSEE
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHCCCCCEEEEEEEECCCEECCCEE
T ss_conf             97247899999999999999999999749799984899999749999678999996198715999862234335322638


Q ss_pred             EEEEEECCEEEEEEEEHHHHEEEECCCCCEEEEECC
Q ss_conf             999984987668998442420230677530356034
Q gi|254780955|r  107 EVGLSFSNVPERLVIPFNAIKGFYDPSVNFELEFDV  142 (204)
Q Consensus       107 sV~LsF~g~~e~L~IPf~AIt~F~DPSV~FgLqF~~  142 (204)
                      ||+|||||+||+|+|||+||++|+||||+|||||+.
T Consensus        81 sV~LsF~~~~e~L~IPf~aI~~F~DPsv~FgL~F~~  116 (117)
T d2nysa1          81 EIGLSFSDTPEKLVIPYNAIRGFYDPSVNFELEFDV  116 (117)
T ss_dssp             EEEEEETTEEEEEEEEGGGEEEEEEGGGTEEEECCC
T ss_pred             EEEEEECCEEEEEEEEHHHHHEECCCCCCEEEEECC
T ss_conf             999970993578994368830123888772897148

PyMOL of d2nysa1

>d1yfna1 b.136.1.1 (A:4-111) Stringent starvation protein B, SspB {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ou8a_ b.136.1.1 (A:) Stringent starvation protein B, SspB {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure

Homologous Domains in MMDB70 Database Detected by RPS-BLAST

Original result of RPS-BLAST against MMDB70 database

Identity	Alignment graph	Length	Definition	E-value
Target		204	hypothetical protein CLIBASIA_04270 [Candidatus Li
2nys_A_		176	(A:) AGR_C_3712P; SSPB, stringent starvation prote	5e-59
2qas_A_		157	(A:) SSPB, hypothetical protein; SSPB, adaptor, CL	1e-54
1yfn_A_		118	(A:) Stringent starvation protein B; protein-pepti	4e-24
1ou9_A_		129	(A:) Stringent starvation protein B homolog; SSRA	6e-22
1ou8_A_		111	(A:) Stringent starvation protein B homolog; pepti	8e-21

>2nys_A (A:) AGR_C_3712P; SSPB, stringent starvation protein B, NESG, ATR88, structural genomics, PSI-2, protein structure initiative; 2.70A {Agrobacterium tumefaciens str}Length = 176	Back alignment and structure

 Score =  221 bits (565), Expect = 5e-59
 Identities = 97/177 (54%), Positives = 122/177 (68%), Gaps = 13/177 (7%)

Query: 28  DHIRYDILAKEALRGLVKVVLSEVASIGSLPGEHHFYITFATNARGVRISQNLRKNYPEK 87
           DHIRYDILA++ALRG+++ VL EVA+ G LPG+HHF+ITF T A GVRISQ+L+  Y E+
Sbjct: 4   DHIRYDILAQDALRGVIRKVLGEVAATGRLPGDHHFFITFLTGAPGVRISQHLKSKYAEQ 63

Query: 88  MTIVIQNQFWDLKVLDNHFEVGLSFSNVPERLVIPFNAIKGFYDPSVNFELEFDVHIEHI 147
            TIVIQ+QFWD KV +  FE+GLSFS+ PE+LVIP+NAI+GFYDPSVNFELEFDV +   
Sbjct: 64  XTIVIQHQFWDXKVTETGFEIGLSFSDTPEKLVIPYNAIRGFYDPSVNFELEFDVPLAKE 123

Query: 148 EEKLEGGNTGKVLTSPDNFDKNQTNSVSQDSSKKKSTKKQNKNKMASVISLDNFRKK 204
           EE  E   T      P + +    +   +   +KK           SV+SLD FRKK
Sbjct: 124 EEXEEAEIT----AYPVSHEAKPASETPKSGEEKKE---------GSVVSLDAFRKK 167

PyMOL of 2nys

>1yfn_A (A:) Stringent starvation protein B; protein-peptide complex, SSPB, RSEA, protein binding; 1.80A {Escherichia coli}Length = 118	Back alignment and structure

>1ou9_A (A:) Stringent starvation protein B homolog; SSRA peptide-binding protein, homodimer, transport protein; 1.80A {Haemophilus influenzae}Length = 129	Back alignment and structure

>1ou8_A (A:) Stringent starvation protein B homolog; peptide-binding pocket, protein-peptide complex, homodimer, transport protein; 1.60A {Haemophilus influenzae}Length = 111	Back alignment and structure

Homologous Domains in MMDB70 Database Detected by HHsearch

Original result of HHsearch against MMDB70 database

Identity	Alignment graph	Length	Definition	Probability
Target		204	hypothetical protein CLIBASIA_04270 [Candidatus Liberib
2nys_A_		176	AGR_C_3712P; SSPB, stringent starvation protein B,	100.0
2qas_A_		157	SSPB, hypothetical protein; SSPB, adaptor, CLPX, u	100.0
1yfn_A_		118	Stringent starvation protein B; protein-peptide co	99.94
1ou9_A_		129	Stringent starvation protein B homolog; SSRA pepti	99.92
1ou8_A_		111	Stringent starvation protein B homolog; peptide-bi	99.9

>2nys_A (A:) AGR_C_3712P; SSPB, stringent starvation protein B, NESG, ATR88, structural genomics, PSI-2, protein structure initiative; 2.70A {Agrobacterium tumefaciens str}	Back alignment and structure

Probab=100.00  E-value=0  Score=488.76  Aligned_cols=166  Identities=58%  Similarity=0.943  Sum_probs=141.3

Q ss_pred             HHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHCCCEEEEEEEEEECCEEECCCE
Q ss_conf             22104989999999999999999999970899987469999845888877598999639753799843112180764547
Q gi|254780955|r   26 NYDHIRYDILAKEALRGLVKVVLSEVASIGSLPGEHHFYITFATNARGVRISQNLRKNYPEKMTIVIQNQFWDLKVLDNH  105 (204)
Q Consensus        26 ~~Dli~Y~~l~~~Alr~Vvr~~L~~v~~~g~LpG~hHfyItF~T~~~gV~ip~~L~~~yP~emTIVlQhqf~dL~V~~~~  105 (204)
                      ++|+|+|++||++|||||||+||..|++.|+|||+|||||||+|++|||+||+|||+|||+|||||||||||||+|++++
T Consensus         2 a~d~I~Y~~l~~~AlrgVVr~vL~~va~~g~LPG~HHFyITF~T~~pGV~l~~~L~~~YP~EMTIVLQHQF~dL~V~e~~   81 (176)
T 2nys_A            2 GQDHIRYDILAQDALRGVIRKVLGEVAATGRLPGDHHFFITFLTGAPGVRISQHLKSKYAEQXTIVIQHQFWDXKVTETG   81 (176)
T ss_dssp             -CCSSCHHHHHHHHHHHHHHHHHHHHHHHSSCCTTCCEEEEEESSSTTCBCCHHHHHHSSSEEEEEESSSCEEEEECSSE
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHCCCEEEEEHHHHHCCEEEECCE
T ss_conf             73405799999999999999999999983979988679999965999958899998609843778636553230781364


Q ss_pred             EEEEEEECCEEEEEEEEHHHHEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             99999849876689984424202306775303560346766543344456544444565566433444444455566555
Q gi|254780955|r  106 FEVGLSFSNVPERLVIPFNAIKGFYDPSVNFELEFDVHIEHIEEKLEGGNTGKVLTSPDNFDKNQTNSVSQDSSKKKSTK  185 (204)
Q Consensus       106 FsV~LsF~g~~e~L~IPf~AIt~F~DPSV~FgLqF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (204)
                      |||+|||||+||+|+|||+||++|+||||+|||||++..+.+++..+......             ..........+.++
T Consensus        82 FsV~LsFgg~pE~L~IPf~AI~~F~DPsv~F~L~Fe~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~  148 (176)
T 2nys_A           82 FEIGLSFSDTPEKLVIPYNAIRGFYDPSVNFELEFDVPLAKEEEXEEAEITAY-------------PVSHEAKPASETPK  148 (176)
T ss_dssp             EEEEEEETTEEEEEEEEGGGEEEEEEGGGTEEEECCCC------------------------------------------
T ss_pred             EEEEEEECCEEEEEEEEHHHHHEEECCCCCCCEECCCCCCCCCCCCCCCCCCC-------------CCCCCCCCCCCCCC
T ss_conf             89999759986999988688236267677864321886654444456666667-------------76655577767887


Q ss_pred             CCCCCCCCCEEEEEECCCC
Q ss_conf             6665677728983100269
Q gi|254780955|r  186 KQNKNKMASVISLDNFRKK  204 (204)
Q Consensus       186 ~~~~~~~aeVVSLD~FRKK  204 (204)
                      .....++|+|||||+||||
T Consensus       149 ~~~~~~~a~VVsLD~FRKK  167 (176)
T 2nys_A          149 SGEEKKEGSVVSLDAFRKK  167 (176)
T ss_dssp             -------------------
T ss_pred             CCCCCCCCCEEEECCCCCC
T ss_conf             8787888999971310267

PyMOL of 2nys

>1yfn_A (A:) Stringent starvation protein B; protein-peptide complex, SSPB, RSEA, protein binding; 1.80A {Escherichia coli}	Back alignment and structure

>1ou9_A (A:) Stringent starvation protein B homolog; SSRA peptide-binding protein, homodimer, transport protein; 1.80A {Haemophilus influenzae}	Back alignment and structure

>1ou8_A (A:) Stringent starvation protein B homolog; peptide-binding pocket, protein-peptide complex, homodimer, transport protein; 1.60A {Haemophilus influenzae}	Back alignment and structure

Protein GIs
254780938	254780939
254780940	254780941
254780942	254780943
254780944	254780945
254780946	254780947
peg_869	254780948
254780949	255764508
peg_873	peg_874
254780951	254780952
254780953	254780954
254780955	peg_880
254780956	254780957
254780958	254780959
peg_885	254780960
peg_887	peg_888
peg_889	254780961
254780962	254780963
254780964	254780965
254780966	254780967
254780968	254780969
254780970	254780971
254780972	254780973
254780974	254780975
peg_905	254780976
254780977	254780978
254780979	254780980
peg_911	peg_912
254780981	peg_913
254780982	254780983
peg_916	254780984
254780985	254780986
254780987	254780988
254780989	254780990
254780991	254780992
254780993	254780994
254780995	254780996
254780997	254780998
254780999	peg_930
peg_931	254781000
254781001	254781002
254781003	254781004
peg_937	254781005
254781006	254781007
254781008	peg_942
254781009	254781010
peg_945	254781011
254781012	254781013
254781014	peg_950
254781015	254781016
254781017	254781018
254781019	254781020
255764509	254781022
254781023	254781024
254781025	peg_961
254781026	254781027
254781028	254781029
254781030	254781031
254781032	254781033
254781034	255764510
254781036	254781037
254781038	254781039
254781040	254781041
254781042	254781043
254781044	254781045
254781046	254781047
254781048	254781049
254781050	254781051
254781052	254781053
254781054	254781055
254781056	254781057
254781058	peg_993
254781059	254781060
254781061	254781062
254781063	254781064
254781065	254781066
254781067	254781068
254781069	254781070
254781071	254781072
254781073	254781074
254781075	254781076
254781077	254781078
254781079	254781080
254781081	254781082
254781083	254781084
254781085	254781086
254781087	254781088
254781089	254781090
254781091	254781092
254781093	254781094
254781095	254781096
254781097	254781098
254781099	254781100
254781101	254781102
254781103	254781104
255764511	254781106
254781107	254781108
254781109	254781110
peg_1044	254781111
254781112	254781113
254781114	254781115
255764512	255764513
254781118	254781119
254781120	254781121
254781122	254781123
254781124	254781125
peg_1058	254781126
254781127	254781128
254781129	254781130
254781131	peg_1064
254781132	254781133
254781134	254781135
254781136	254781137
254781138	254781139
254781140	peg_1073
peg_1074	254781141
254781142	254781143
254781144	254781145
peg_1078	peg_1079
peg_1080	254781146
254781147	peg_1083
254781148	254781149
peg_1086	peg_1087
254781150	254781151
254781152	peg_1090
254781153	254781154
254781155	254781156
254781157	254781158
254781159	peg_1096
254781160	254781161
254781162	254781163
peg_1101	254781164
254781165	254781166
254781167	254781168
254781169	peg_1107
254781170	254781171
254781172	255764514
254781174	254781175
254781176	254781177
254781178	254781179
254781180	254781181
peg_1120	254781182
254781183	peg_1123
254781184	254781185
254781186	254781187
254781188	peg_1128
254781189	254781190
254781191	254781192
254781193	254781194
255764515	254781196
254781197	254781198
254781199	peg_1140
255764516	peg_1142
255764517	254781202
254781203	254781204
254781205	254781206
254781207	254781208
254781209	254781210
254781211	254781212
254781213	254781214
254781215	254781216
254781217	254781218
254781219	254781220
254781221	254781222
254781223	254781224
254781225	254781226
254781227	254781228
254780122	254780123
254780124	254780125
254780126	254780127
254780128	254780129
254780130	254780131
254780132	254780133
254780134	254780135
254780136	peg_15
254780137	254780138
254780139	254780140
254780141	peg_21
254780142	254780143
254780144	254780145
peg_26	254780146
254780147	254780148
254780149	254780150
254780151	peg_33
peg_34	254780152
peg_36	254780153
254780154	254780155
254780156	254780157
254780158	peg_42
254780159	254780160
254780161	254780162
254780163	254780164
254780165	254780166
254780167	254780168
254780169	peg_54
254780170	254780171
254780172	254780173
254780174	peg_60
254780175	254780176
254780177	254780178
254780179	254780180
254780181	254780182
254780183	254780184
254780185	254780186
254780187	254780188
peg_74	peg_75
254780189	254780190
254780191	255764460
peg_80	254780193
peg_82	254780194
254780195	254780196
254780197	254780198
254780199	254780200
254780201	254780202
peg_91	254780203
254780204	254780205
254780206	254780207
254780208	peg_97
peg_98	254780209
254780210	254780211
254780212	254780213
254780214	254780215
255764461	254780217
254780218	254780219
254780220	peg_109
254780221	254780222
254780223	254780224
254780225	254780226
peg_116	254780227
254780228	254780229
254780230	254780231
254780232	254780233
254780234	254780235
254780236	254780237
peg_128	254780238
254780239	254780240
254780241	254780242
254780243	254780244
254780245	254780246
254780247	254780248
254780249	254780250
254780251	254780252
254780253	254780254
254780255	254780256
254780257	254780258
254780259	254780260
254780261	254780262
254780263	254780264
254780265	254780266
254780267	254780268
254780269	254780270
254780271	254780272
254780273	254780274
peg_166	254780275
254780276	254780277
254780278	254780279
254780280	254780281
254780282	254780283
254780284	254780285
254780286	254780287
254780288	254780289
254780290	254780291
254780292	254780293
peg_186	254780294
254780295	255764462
254780297	peg_191
254780298	254780299
254780300	254780301
254780302	254780303
254780304	254780305
254780306	254780307
254780308	254780309
254780310	peg_204
254780311	254780312
254780313	254780314
254780315	254780316
254780317	254780318
254780319	254780320
254780321	254780322
254780323	peg_218
254780324	254780325
254780326	254780327
254780328	peg_224
254780329	254780330
peg_227	254780331
254780332	254780333
254780334	peg_232
254780335	peg_233
254780336	254780337
254780338	peg_237
254780339	254780340
254780341	254780342
254780343	254780344
254780345	254780346
254780347	254780348
peg_248	254780349
254780350	254780351
peg_252	255764463
peg_254	254780353
254780354	254780355
254780356	254780357
255764464	254780359
254780360	254780361
255764465	254780363
254780364	254780365
255764466	254780367
254780368	254780369
254780370	254780371
254780372	254780373
254780374	254780375
254780376	254780377
254780378	254780379
254780380	254780381
254780382	254780383
254780384	255764467
254780386	254780387
254780388	254780389
254780390	254780391
254780392	255764468
255764469	254780395
peg_298	254780396
254780397	254780398
254780399	254780400
254780401	254780402
254780403	254780404
254780405	254780406
254780407	254780408
254780409	254780410
254780411	254780412
254780413	254780414
255764470	254780416
254780417	254780418
254780419	254780420
254780421	255764471
254780423	254780424
254780425	254780426
peg_330	254780427
255764472	254780429
254780430	254780431
254780432	255764473
254780434	254780435
254780436	254780437
254780438	254780439
254780440	255764474
254780442	254780443
peg_348	peg_349
254780444	254780445
254780446	254780447
254780448	254780449
254780450	254780451
254780452	254780453
254780454	peg_360
254780455	254780456
peg_363	254780457
254780458	254780459
254780460	254780461
254780462	254780463
254780464	254780465
254780466	peg_374
254780467	254780468
254780469	254780470
254780471	254780472
254780473	254780474
254780475	254780476
254780477	254780478
254780479	254780480
254780481	254780482
254780483	254780484
peg_393	peg_394
254780485	254780486
254780487	254780488
254780489	254780490
254780491	254780492
254780829	254780828
254780827	254780826
255764475	255764476
254780824	254780823
peg_409	peg_410
254780822	254780821
254780820	peg_414
255764477	254780818
254780817	254780816
254780815	254780814
254780813	254780812
254780811	peg_423
254780810	254780809
254780808	254780807
254780806	254780805
254780804	254780803
254780802	254780801
254780800	254780799
254780798	254780797
254780796	254780795
254780794	254780793
255764478	254780791
254780790	254780789
254780788	254780787
254780786	254780785
254780784	254780783
254780782	255764479
254780781	254780780
peg_455	255764480
254780779	254780778
254780777	254780776
254780775	254780774
254780773	254780772
254780771	254780770
255764481	254780768
254780767	254780766
254780765	254780764
peg_472	peg_473
254780763	254780762
peg_476	peg_477
254780761	254780760
254780759	254780758
254780757	255764482
254780755	254780754
254780753	254780752
254780751	254780750
254780749	254780748
254780747	peg_493
254780746	254780745
254780744	254780743
254780742	254780741
254780740	254780739
255764483	254780737
254780736	254780735
254780734	254780733
254780732	peg_509
255764484	254780730
254780729	254780728
254780727	255764485
254780725	254780724
254780723	254780722
254780721	254780720
254780719	254780718
peg_523	254780717
254780716	254780715
254780714	254780713
254780712	254780711
254780710	peg_532
254780709	254780708
254780707	255764486
254780705	254780704
254780703	255764487
254780701	peg_542
254780700	254780699
254780698	254780697
254780696	254780695
254780694	254780693
254780692	254780691
254780690	254780689
254780688	254780687
255764488	254780685
254780684	254780683
254780682	255764489
254780680	peg_563
254780679	254780678
254780677	254780676
254780675	254780674
peg_568	254780673
255764490	254780671
254780670	254780669
peg_574	254780668
254780667	254780666
255764491	peg_577
254780664	254780663
254780662	254780661
peg_582	254780660
254780659	254780658
254780657	255764492
254780655	254780654
254780653	254780652
254780651	254780650
peg_593	254780649
254780648	254780647
254780646	peg_598
254780645	254780644
255764493	254780642
254780641	254780640
peg_603	254780639
254780638	255764494
254780636	254780635
254780634	254780633
254780632	254780631
peg_612	254780630
254780629	254780628
254780627	254780626
254780625	254780624
254780623	254780622
254780621	254780620
254780619	254780618
254780617	254780616
254780615	254780614
254780613	254780612
254780611	254780610
peg_634	255764495
254780608	254780607
254780606	254780605
254780604	254780603
254780602	254780601
254780600	255764496
254780598	255764497
254780596	254780595
254780594	254780593
254780592	254780591
254780590	254780589
254780588	255764498
peg_658	254780586
254780585	254780584
254780583	254780582
254780581	255764499
254780579	254780578
254780577	254780576
254780575	255764500
peg_671	254780573
254780572	254780571
254780570	254780569
254780568	254780567
254780565	254780564
254780563	254780562
peg_683	254780561
255764501	254780559
254780558	254780557
254780556	254780555
peg_691	254780554
254780553	254780552
254780551	255764502
254780549	254780548
254780547	254780546
254780545	254780544
254780543	254780542
255764503	254780540
254780539	254780538
254780537	254780536
254780535	254780534
254780533	254780532
254780531	254780530
254780529	254780528
254780527	254780526
254780525	254780524
254780523	254780522
254780521	254780520
254780519	254780518
255764504	254780516
254780515	254780514
254780513	254780512
254780511	254780510
254780509	254780508
254780507	254780506
254780505	254780504
254780503	254780502
254780501	254780500
254780499	254780498
254780497	254780496
254780495	254780494
254780493	254780830
254780831	254780832
254780833	peg_753
peg_754	254780834
255764505	254780836
254780837	peg_759
254780838	254780839
254780840	254780841
254780842	254780843
254780844	254780845
254780846	254780847
254780848	254780849
254780850	254780851
254780852	254780853
254780854	254780855
254780856	254780857
254780858	254780859
254780860	254780861
254780862	254780863
254780864	254780865
254780866	254780867
254780868	254780869
peg_786	254780870
peg_788	peg_789
254780871	254780872
254780873	254780874
254780875	254780876
254780877	254780878
254780879	254780880
254780881	254780882
254780883	255764506
254780885	254780886
254780887	254780888
peg_804	254780889
254780890	254780891
254780892	254780893
254780894	254780895
254780896	peg_813
254780897	254780898
peg_816	peg_817
peg_818	254780899
254780900	254780901
254780902	254780903
254780904	254780905
254780906	254780907
254780908	254780909
255764507	254780911
254780912	254780913
254780914	peg_834
254780915	254780916
254780917	254780918
254780919	254780920
254780921	254780922
254780923	254780924
254780925	254780926
254780927	254780928
254780929	254780930
254780931	peg_851
peg_852	254780932
254780933	254780934
254780935	254780936
254780937

254780955

hypothetical protein CLIBASIA_04270

Prediction of Local Sequence Properties

Close Homologs Detected by BLAST or PSI-BLAST

Homolog within the Genome Detected by BLAST

Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations

Conserved Domains in CDD DatabaseDetected by RPS-BLAST and HHsearch

Conserved Domains in CDD Database Detected by RPS-BLAST

Conserved Domains in CDD Database Detected by HHsearch

Homologous Structures in PDB DatabaseDetected by PSI-BLAST, RPS-BLAST and HHsearch

Homologous Structures Detected by PSI-BLAST against Nonredundant Database

Homologous Structures in PDB70 Database Detected by RPS-BLAST

Homologous Structures in PDB70 Database Detected by HHsearch

Homologous Domains in SCOP and MMDB DatabaseDetected by RPS-BLAST and HHsearch

Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST

Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch

Homologous Domains in MMDB70 Database Detected by RPS-BLAST

Homologous Domains in MMDB70 Database Detected by HHsearch

Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch

Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch

Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch