254780955
hypothetical protein CLIBASIA_04270
GeneID in NCBI database: | 8209977 | Locus tag: | CLIBASIA_04270 |
Protein GI in NCBI database: | 254780955 | Protein Accession: | YP_003065368.1 |
Gene range: | -(951807, 952421) | Protein Length: | 204aa |
Gene description: | hypothetical protein | ||
COG prediction: | [S] Uncharacterized protein conserved in bacteria | ||
KEGG prediction: | hypothetical protein; K09985 hypothetical protein | ||
SEED prediction: | hypothetical protein | ||
Pathway involved in KEGG: | not defined | ||
Subsystem involved in SEED: | - none - | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 204 | hypothetical protein CLIBASIA_04270 [Candidatus Liberib | |||
315122503 | 172 | hypothetical protein CKC_03775 [Candidatus Liberibacter | 1 | 9e-63 | |
241205507 | 171 | hypothetical protein Rleg_2803 [Rhizobium leguminosarum | 1 | 4e-54 | |
218507824 | 171 | hypothetical protein RetlB5_09535 [Rhizobium etli Brasi | 1 | 1e-53 | |
116253000 | 171 | hypothetical protein RL3257 [Rhizobium leguminosarum bv | 1 | 1e-53 | |
86358404 | 171 | hypothetical protein RHE_CH02800 [Rhizobium etli CFN 42 | 1 | 2e-53 | |
218463519 | 171 | hypothetical protein RetlK5_30634 [Rhizobium etli Kim 5 | 1 | 2e-53 | |
209550126 | 171 | hypothetical protein Rleg2_2544 [Rhizobium leguminosaru | 1 | 3e-53 | |
190892529 | 171 | hypothetical protein RHECIAT_CH0002944 [Rhizobium etli | 1 | 3e-53 | |
222149085 | 169 | hypothetical protein Avi_2824 [Agrobacterium vitis S4] | 1 | 1e-52 | |
222086398 | 169 | hypothetical protein Arad_2936 [Agrobacterium radiobact | 1 | 5e-52 |
>gi|315122503|ref|YP_004062992.1| hypothetical protein CKC_03775 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 172 | Back alignment and organism information |
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Score = 243 bits (621), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 120/165 (72%), Positives = 136/165 (82%), Gaps = 1/165 (0%) Query: 25 MNYDHIRYDILAKEALRGLVKVVLSEVASIGSLPGEHHFYITFATNARGVRISQNLRKNY 84 MN+DHIRYDIL KEALRGLVK VL+E A+IGSLPG+HHFYITFATNARGVRISQN++K Y Sbjct: 1 MNHDHIRYDILTKEALRGLVKTVLAETAAIGSLPGDHHFYITFATNARGVRISQNIKKIY 60 Query: 85 PEKMTIVIQNQFWDLKVLDNHFEVGLSFSNVPERLVIPFNAIKGFYDPSVNFELEFDVHI 144 PEK+TIVIQNQFWDLKV DNHFEVGLSFSNVPE L IPFNAI+GFYDPSVNFELEFDVH+ Sbjct: 61 PEKITIVIQNQFWDLKVFDNHFEVGLSFSNVPELLSIPFNAIQGFYDPSVNFELEFDVHL 120 Query: 145 EHIEEKLEGGNTGKVLTSPDNFDKNQTNSVSQDSSKKKSTKKQNK 189 EE+LE G+VL P+NF+K+Q+ + KKQ K Sbjct: 121 YDAEEELE-NKKGEVLGLPENFNKDQSPDSLEKLPTDNKEKKQKK 164 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|241205507|ref|YP_002976603.1| hypothetical protein Rleg_2803 [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 171 | Back alignment and organism information |
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>gi|218507824|ref|ZP_03505702.1| hypothetical protein RetlB5_09535 [Rhizobium etli Brasil 5] Length = 171 | Back alignment and organism information |
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>gi|116253000|ref|YP_768838.1| hypothetical protein RL3257 [Rhizobium leguminosarum bv. viciae 3841] Length = 171 | Back alignment and organism information |
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>gi|86358404|ref|YP_470296.1| hypothetical protein RHE_CH02800 [Rhizobium etli CFN 42] Length = 171 | Back alignment and organism information |
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>gi|218463519|ref|ZP_03503610.1| hypothetical protein RetlK5_30634 [Rhizobium etli Kim 5] Length = 171 | Back alignment and organism information |
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>gi|209550126|ref|YP_002282043.1| hypothetical protein Rleg2_2544 [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 171 | Back alignment and organism information |
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>gi|190892529|ref|YP_001979071.1| hypothetical protein RHECIAT_CH0002944 [Rhizobium etli CIAT 652] Length = 171 | Back alignment and organism information |
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>gi|222149085|ref|YP_002550042.1| hypothetical protein Avi_2824 [Agrobacterium vitis S4] Length = 169 | Back alignment and organism information |
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>gi|222086398|ref|YP_002544932.1| hypothetical protein Arad_2936 [Agrobacterium radiobacter K84] Length = 169 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 204 | hypothetical protein CLIBASIA_04270 [Candidatus Liberib | ||
pfam04386 | 152 | pfam04386, SspB, Stringent starvation protein B | 5e-44 | |
COG3814 | 157 | COG3814, COG3814, Uncharacterized protein conserved in | 7e-47 |
>gnl|CDD|146826 pfam04386, SspB, Stringent starvation protein B | Back alignment and domain information |
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>gnl|CDD|33607 COG3814, COG3814, Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
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Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 204 | hypothetical protein CLIBASIA_04270 [Candidatus Liberib | ||
pfam07031 | 153 | consensus | 100.0 | |
COG3814 | 157 | Uncharacterized protein conserved in bacteria [Function | 100.0 | |
pfam04386 | 152 | SspB Stringent starvation protein B. Escherichia coli s | 100.0 | |
PRK11798 | 140 | ClpXP protease specificity-enhancing factor; Provisiona | 98.01 | |
COG2969 | 155 | SspB Stringent starvation protein B [General function p | 95.85 |
>pfam07031 consensus | Back alignment and domain information |
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>COG3814 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
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>pfam04386 SspB Stringent starvation protein B | Back alignment and domain information |
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>PRK11798 ClpXP protease specificity-enhancing factor; Provisional | Back alignment and domain information |
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>COG2969 SspB Stringent starvation protein B [General function prediction only] | Back alignment and domain information |
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Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
Identity | Alignment graph | Length | Definition | E-value |
Target | 204 | hypothetical protein CLIBASIA_04270 [Candidatus Liberib | ||
2nys_A | 176 | X-Ray Crystal Structure Of Protein Agr_c_3712 From | 1e-53 | |
2qas_A | 157 | Crystal Structure Of Caulobacter Crescentus Sspb Or | 4e-40 | |
2qaz_A | 128 | Structure Of C. Crescentus Sspb Ortholog Length = 1 | 9e-40 |
>gi|119390693|pdb|2NYS|A Chain A, X-Ray Crystal Structure Of Protein Agr_c_3712 From Agrobacterium Tumefaciens. Northeast Structural Genomics Consortium Target Atr88. Length = 176 | Back alignment and structure |
Score = 213 bits (542), Expect = 1e-53, Method: Composition-based stats. Identities = 96/178 (53%), Positives = 122/178 (68%), Gaps = 13/178 (7%) Query: 27 YDHIRYDILAKEALRGLVKVVLSEVASIGSLPGEHHFYITFATNARGVRISQNLRKNYPE 86 DHIRYDILA++ALRG+++ VL EVA+ G LPG+HHF+ITF T A GVRISQ+L+ Y E Sbjct: 3 QDHIRYDILAQDALRGVIRKVLGEVAATGRLPGDHHFFITFLTGAPGVRISQHLKSKYAE 62 Query: 87 KMTIVIQNQFWDLKVLDNHFEVGLSFSNVPERLVIPFNAIKGFYDPSVNFELEFDVHIEH 146 + TIVIQ+QFWD KV + FE+GLSFS+ PE+LVIP+NAI+GFYDPSVNFELEFDV + Sbjct: 63 QXTIVIQHQFWDXKVTETGFEIGLSFSDTPEKLVIPYNAIRGFYDPSVNFELEFDVPLAK 122 Query: 147 IEEKLEGGNTGKVLTSPDNFDKNQTNSVSQDSSKKKSTKKQNKNKMASVISLDNFRKK 204 EE E T ++ + ++ K + K SV+SLD FRKK Sbjct: 123 EEEXEEAEITAYPVS-------------HEAKPASETPKSGEEKKEGSVVSLDAFRKK 167 |
>gi|158429805|pdb|2QAZ|A Chain A, Structure Of C. Crescentus Sspb Ortholog Length = 128 | Back alignment and structure |
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 204 | hypothetical protein CLIBASIA_04270 [Candidatus Liberib | ||
2nys_A | 176 | AGR_C_3712P; SSPB, stringent starvation protein B, NESG | 6e-48 | |
2qas_A | 157 | SSPB, hypothetical protein; SSPB, adaptor, CLPX, unknow | 2e-45 | |
1ou9_A | 129 | Stringent starvation protein B homolog; SSRA peptide-bi | 2e-14 |
>2nys_A AGR_C_3712P; SSPB, stringent starvation protein B, NESG, ATR88, structural genomics, PSI-2, protein structure initiative; 2.70A {Agrobacterium tumefaciens str} SCOP: b.136.1.2 Length = 176 | Back alignment and structure |
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Score = 185 bits (471), Expect = 6e-48 Identities = 96/180 (53%), Positives = 123/180 (68%), Gaps = 13/180 (7%) Query: 25 MNYDHIRYDILAKEALRGLVKVVLSEVASIGSLPGEHHFYITFATNARGVRISQNLRKNY 84 M DHIRYDILA++ALRG+++ VL EVA+ G LPG+HHF+ITF T A GVRISQ+L+ Y Sbjct: 1 MGQDHIRYDILAQDALRGVIRKVLGEVAATGRLPGDHHFFITFLTGAPGVRISQHLKSKY 60 Query: 85 PEKMTIVIQNQFWDLKVLDNHFEVGLSFSNVPERLVIPFNAIKGFYDPSVNFELEFDVHI 144 E+MTIVIQ+QFWD+KV + FE+GLSFS+ PE+LVIP+NAI+GFYDPSVNFELEFDV + Sbjct: 61 AEQMTIVIQHQFWDMKVTETGFEIGLSFSDTPEKLVIPYNAIRGFYDPSVNFELEFDVPL 120 Query: 145 EHIEEKLEGGNTGKVLTSPDNFDKNQTNSVSQDSSKKKSTKKQNKNKMASVISLDNFRKK 204 EE + + + ++ K + K SV+SLD FRKK Sbjct: 121 AKEEE-------------MEEAEITAYPVSHEAKPASETPKSGEEKKEGSVVSLDAFRKK 167 |
>1ou9_A Stringent starvation protein B homolog; SSRA peptide-binding protein, homodimer, transport protein; 1.80A {Haemophilus influenzae} SCOP: b.136.1.1 PDB: 1oul_A 1zsz_C Length = 129 | Back alignment and structure |
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Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 204 | hypothetical protein CLIBASIA_04270 [Candidatus Liberib | ||
2nys_A | 176 | AGR_C_3712P; SSPB, stringent starvation protein B, NESG | 100.0 | |
2qas_A | 157 | SSPB, hypothetical protein; SSPB, adaptor, CLPX, unknow | 100.0 | |
1yfn_A | 118 | Stringent starvation protein B; protein-peptide complex | 98.44 | |
1ou8_A | 111 | Stringent starvation protein B homolog; peptide-binding | 98.43 | |
1ou9_A | 129 | Stringent starvation protein B homolog; SSRA peptide-bi | 98.32 |
>2nys_A AGR_C_3712P; SSPB, stringent starvation protein B, NESG, ATR88, structural genomics, PSI-2, protein structure initiative; 2.70A {Agrobacterium tumefaciens str} SCOP: b.136.1.2 | Back alignment and structure |
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Probab=100.00 E-value=0 Score=430.82 Aligned_cols=167 Identities=59% Similarity=0.958 Sum_probs=140.7 Q ss_pred CHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHCCCEEEEEEEEEECCEEECCC Q ss_conf 02210498999999999999999999997089998746999984588887759899963975379984311218076454 Q gi|254780955|r 25 MNYDHIRYDILAKEALRGLVKVVLSEVASIGSLPGEHHFYITFATNARGVRISQNLRKNYPEKMTIVIQNQFWDLKVLDN 104 (204) Q Consensus 25 M~~Dli~Y~~l~~~Alr~Vvr~~L~~v~~~g~LpG~hHfyItF~T~~~gV~ip~~L~~~yP~emTIVlQhqf~dL~V~~~ 104 (204) |++|+|+|++|+++|||||||++|+.|+++|+|||+|||||||+|++|||+||+||+++||+|||||||||||||.|+++ T Consensus 1 m~~d~i~Y~~l~~~alr~vvr~~L~~v~~~G~lpg~hHfYItf~t~~pGV~vP~~l~~~yp~emtiVlq~qf~dL~V~~d 80 (176) T 2nys_A 1 MGQDHIRYDILAQDALRGVIRKVLGEVAATGRLPGDHHFFITFLTGAPGVRISQHLKSKYAEQMTIVIQHQFWDMKVTET 80 (176) T ss_dssp --CCSSCHHHHHHHHHHHHHHHHHHHHHHHSSCCTTCCEEEEEESSSTTCBCCHHHHHHSSSEEEEEESSSCEEEEECSS T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHCCCCCEEEECHHHHCCEEEECC T ss_conf 98450479999999999999999999998297998866999997699995889999862984148964555359088546 Q ss_pred EEEEEEEECCEEEEEEEEHHHHEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 79999984987668998442420230677530356034676654334445654444456556643344444445556655 Q gi|254780955|r 105 HFEVGLSFSNVPERLVIPFNAIKGFYDPSVNFELEFDVHIEHIEEKLEGGNTGKVLTSPDNFDKNQTNSVSQDSSKKKST 184 (204) Q Consensus 105 ~FsV~LsF~g~~e~L~IPf~AIt~F~DPSV~FgLqF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (204) +|||+|||||+|++|+|||+||++|+||||+|||+|+.....+.+..+..... ...........++. T Consensus 81 ~fsf~lrF~Gvp~~l~IP~~AI~af~dpevgfGL~F~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~ 147 (176) T 2nys_A 81 GFEIGLSFSDTPEKLVIPYNAIRGFYDPSVNFELEFDVPLAKEEEMEEAEITA-------------YPVSHEAKPASETP 147 (176) T ss_dssp EEEEEEEETTEEEEEEEEGGGEEEEEEGGGTEEEECCCC----------------------------------------- T ss_pred EEEEEEEECCEEEEEEEEHHHEEEEECCCCCCCEECCCCCCCCCCCCCCCCCC-------------CCCCCCCCCCCCCC T ss_conf 58999998996079998757801656767786223288665444445566667-------------77764456777788 Q ss_pred CCCCCCCCCCEEEEEECCCC Q ss_conf 56665677728983100269 Q gi|254780955|r 185 KKQNKNKMASVISLDNFRKK 204 (204) Q Consensus 185 ~~~~~~~~aeVVSLD~FRKK 204 (204) ++..++++++|||||+|||| T Consensus 148 ~~~~~k~~~~VVsld~frkK 167 (176) T 2nys_A 148 KSGEEKKEGSVVSLDAFRKK 167 (176) T ss_dssp -------------------- T ss_pred CCCCCCCCCCEEEECCCCCC T ss_conf 88777888988970310268 |
>1yfn_A Stringent starvation protein B; protein-peptide complex, SSPB, RSEA, protein binding; 1.80A {Escherichia coli} SCOP: b.136.1.1 PDB: 1ox9_A 1ox8_A | Back alignment and structure |
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>1ou8_A Stringent starvation protein B homolog; peptide-binding pocket, protein-peptide complex, homodimer, transport protein; 1.60A {Haemophilus influenzae} SCOP: b.136.1.1 PDB: 1zsz_A 1twb_A 1zsz_B | Back alignment and structure |
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>1ou9_A Stringent starvation protein B homolog; SSRA peptide-binding protein, homodimer, transport protein; 1.80A {Haemophilus influenzae} SCOP: b.136.1.1 PDB: 1oul_A 1zsz_C | Back alignment and structure |
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Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | E-value |
204 | hypothetical protein CLIBASIA_04270 [Candidatus Liberib | |||
d2nysa1 | 117 | b.136.1.2 (A:3-119) Uncharacterized protein AGR_C_3712p | 7e-48 |
>d2nysa1 b.136.1.2 (A:3-119) Uncharacterized protein AGR_C_3712p {Agrobacterium tumefaciens [TaxId: 358]} Length = 117 | Back information, alignment and structure |
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class: All beta proteins fold: SspB-like superfamily: SspB-like family: AGR C 3712p-like domain: Uncharacterized protein AGR C 3712p species: Agrobacterium tumefaciens [TaxId: 358] Score = 184 bits (468), Expect = 7e-48 Identities = 82/115 (71%), Positives = 101/115 (87%) Query: 28 DHIRYDILAKEALRGLVKVVLSEVASIGSLPGEHHFYITFATNARGVRISQNLRKNYPEK 87 DHIRYDILA++ALRG+++ VL EVA+ G LPG+HHF+ITF T A GVRISQ+L+ Y E+ Sbjct: 2 DHIRYDILAQDALRGVIRKVLGEVAATGRLPGDHHFFITFLTGAPGVRISQHLKSKYAEQ 61 Query: 88 MTIVIQNQFWDLKVLDNHFEVGLSFSNVPERLVIPFNAIKGFYDPSVNFELEFDV 142 MTIVIQ+QFWD+KV + FE+GLSFS+ PE+LVIP+NAI+GFYDPSVNFELEFDV Sbjct: 62 MTIVIQHQFWDMKVTETGFEIGLSFSDTPEKLVIPYNAIRGFYDPSVNFELEFDV 116 |
Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | Probability |
Target | 204 | hypothetical protein CLIBASIA_04270 [Candidatus Liberib | ||
d2nysa1 | 117 | Uncharacterized protein AGR_C_3712p {Agrobacterium tume | 100.0 | |
d1yfna1 | 108 | Stringent starvation protein B, SspB {Escherichia coli | 98.47 | |
d1ou8a_ | 106 | Stringent starvation protein B, SspB {Haemophilus influ | 98.37 |
>d2nysa1 b.136.1.2 (A:3-119) Uncharacterized protein AGR_C_3712p {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
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class: All beta proteins fold: SspB-like superfamily: SspB-like family: AGR C 3712p-like domain: Uncharacterized protein AGR C 3712p species: Agrobacterium tumefaciens [TaxId: 358] Probab=100.00 E-value=0 Score=404.78 Aligned_cols=116 Identities=71% Similarity=1.221 Sum_probs=114.3 Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHCCCEEEEEEEEEECCEEECCCEE Q ss_conf 21049899999999999999999999708999874699998458888775989996397537998431121807645479 Q gi|254780955|r 27 YDHIRYDILAKEALRGLVKVVLSEVASIGSLPGEHHFYITFATNARGVRISQNLRKNYPEKMTIVIQNQFWDLKVLDNHF 106 (204) Q Consensus 27 ~Dli~Y~~l~~~Alr~Vvr~~L~~v~~~g~LpG~hHfyItF~T~~~gV~ip~~L~~~yP~emTIVlQhqf~dL~V~~~~F 106 (204) +|+|+|++|+++|||+|||++|+.|+++|+|||+|||||||+|++|||+||+|||++||+|||||||||||||+|++++| T Consensus 1 ~d~i~Y~~lv~~alr~Vvr~~L~~v~~~G~Lpg~hHfyITF~T~~~gV~ip~~L~~~YPeEMTIVlQhqF~dL~V~~~~F 80 (117) T d2nysa1 1 QDHIRYDILAQDALRGVIRKVLGEVAATGRLPGDHHFFITFLTGAPGVRISQHLKSKYAEQMTIVIQHQFWDMKVTETGF 80 (117) T ss_dssp CCSSCHHHHHHHHHHHHHHHHHHHHHHHSSCCTTCCEEEEEESSSTTCBCCHHHHHHSSSEEEEEESSSCEEEEECSSEE T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHCCCCCEEEEEEEECCCEECCCEE T ss_conf 97247899999999999999999999749799984899999749999678999996198715999862234335322638 Q ss_pred EEEEEECCEEEEEEEEHHHHEEEECCCCCEEEEECC Q ss_conf 999984987668998442420230677530356034 Q gi|254780955|r 107 EVGLSFSNVPERLVIPFNAIKGFYDPSVNFELEFDV 142 (204) Q Consensus 107 sV~LsF~g~~e~L~IPf~AIt~F~DPSV~FgLqF~~ 142 (204) ||+|||||+||+|+|||+||++|+||||+|||||+. T Consensus 81 sV~LsF~~~~e~L~IPf~aI~~F~DPsv~FgL~F~~ 116 (117) T d2nysa1 81 EIGLSFSDTPEKLVIPYNAIRGFYDPSVNFELEFDV 116 (117) T ss_dssp EEEEEETTEEEEEEEEGGGEEEEEEGGGTEEEECCC T ss_pred EEEEEECCEEEEEEEEHHHHHEECCCCCCEEEEECC T ss_conf 999970993578994368830123888772897148 |
>d1yfna1 b.136.1.1 (A:4-111) Stringent starvation protein B, SspB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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>d1ou8a_ b.136.1.1 (A:) Stringent starvation protein B, SspB {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
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Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 204 | hypothetical protein CLIBASIA_04270 [Candidatus Li | ||
2nys_A_ | 176 | (A:) AGR_C_3712P; SSPB, stringent starvation prote | 5e-59 | |
2qas_A_ | 157 | (A:) SSPB, hypothetical protein; SSPB, adaptor, CL | 1e-54 | |
1yfn_A_ | 118 | (A:) Stringent starvation protein B; protein-pepti | 4e-24 | |
1ou9_A_ | 129 | (A:) Stringent starvation protein B homolog; SSRA | 6e-22 | |
1ou8_A_ | 111 | (A:) Stringent starvation protein B homolog; pepti | 8e-21 |
>2nys_A (A:) AGR_C_3712P; SSPB, stringent starvation protein B, NESG, ATR88, structural genomics, PSI-2, protein structure initiative; 2.70A {Agrobacterium tumefaciens str}Length = 176 | Back alignment and structure |
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Score = 221 bits (565), Expect = 5e-59 Identities = 97/177 (54%), Positives = 122/177 (68%), Gaps = 13/177 (7%) Query: 28 DHIRYDILAKEALRGLVKVVLSEVASIGSLPGEHHFYITFATNARGVRISQNLRKNYPEK 87 DHIRYDILA++ALRG+++ VL EVA+ G LPG+HHF+ITF T A GVRISQ+L+ Y E+ Sbjct: 4 DHIRYDILAQDALRGVIRKVLGEVAATGRLPGDHHFFITFLTGAPGVRISQHLKSKYAEQ 63 Query: 88 MTIVIQNQFWDLKVLDNHFEVGLSFSNVPERLVIPFNAIKGFYDPSVNFELEFDVHIEHI 147 TIVIQ+QFWD KV + FE+GLSFS+ PE+LVIP+NAI+GFYDPSVNFELEFDV + Sbjct: 64 XTIVIQHQFWDXKVTETGFEIGLSFSDTPEKLVIPYNAIRGFYDPSVNFELEFDVPLAKE 123 Query: 148 EEKLEGGNTGKVLTSPDNFDKNQTNSVSQDSSKKKSTKKQNKNKMASVISLDNFRKK 204 EE E T P + + + + +KK SV+SLD FRKK Sbjct: 124 EEXEEAEIT----AYPVSHEAKPASETPKSGEEKKE---------GSVVSLDAFRKK 167 |
>1yfn_A (A:) Stringent starvation protein B; protein-peptide complex, SSPB, RSEA, protein binding; 1.80A {Escherichia coli}Length = 118 | Back alignment and structure |
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>1ou9_A (A:) Stringent starvation protein B homolog; SSRA peptide-binding protein, homodimer, transport protein; 1.80A {Haemophilus influenzae}Length = 129 | Back alignment and structure |
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>1ou8_A (A:) Stringent starvation protein B homolog; peptide-binding pocket, protein-peptide complex, homodimer, transport protein; 1.60A {Haemophilus influenzae}Length = 111 | Back alignment and structure |
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Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 204 | hypothetical protein CLIBASIA_04270 [Candidatus Liberib | ||
2nys_A_ | 176 | AGR_C_3712P; SSPB, stringent starvation protein B, | 100.0 | |
2qas_A_ | 157 | SSPB, hypothetical protein; SSPB, adaptor, CLPX, u | 100.0 | |
1yfn_A_ | 118 | Stringent starvation protein B; protein-peptide co | 99.94 | |
1ou9_A_ | 129 | Stringent starvation protein B homolog; SSRA pepti | 99.92 | |
1ou8_A_ | 111 | Stringent starvation protein B homolog; peptide-bi | 99.9 |
>2nys_A (A:) AGR_C_3712P; SSPB, stringent starvation protein B, NESG, ATR88, structural genomics, PSI-2, protein structure initiative; 2.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
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Probab=100.00 E-value=0 Score=488.76 Aligned_cols=166 Identities=58% Similarity=0.943 Sum_probs=141.3 Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHCCCEEEEEEEEEECCEEECCCE Q ss_conf 22104989999999999999999999970899987469999845888877598999639753799843112180764547 Q gi|254780955|r 26 NYDHIRYDILAKEALRGLVKVVLSEVASIGSLPGEHHFYITFATNARGVRISQNLRKNYPEKMTIVIQNQFWDLKVLDNH 105 (204) Q Consensus 26 ~~Dli~Y~~l~~~Alr~Vvr~~L~~v~~~g~LpG~hHfyItF~T~~~gV~ip~~L~~~yP~emTIVlQhqf~dL~V~~~~ 105 (204) ++|+|+|++||++|||||||+||..|++.|+|||+|||||||+|++|||+||+|||+|||+|||||||||||||+|++++ T Consensus 2 a~d~I~Y~~l~~~AlrgVVr~vL~~va~~g~LPG~HHFyITF~T~~pGV~l~~~L~~~YP~EMTIVLQHQF~dL~V~e~~ 81 (176) T 2nys_A 2 GQDHIRYDILAQDALRGVIRKVLGEVAATGRLPGDHHFFITFLTGAPGVRISQHLKSKYAEQXTIVIQHQFWDXKVTETG 81 (176) T ss_dssp -CCSSCHHHHHHHHHHHHHHHHHHHHHHHSSCCTTCCEEEEEESSSTTCBCCHHHHHHSSSEEEEEESSSCEEEEECSSE T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCHHHHHHCCCEEEEEHHHHHCCEEEECCE T ss_conf 73405799999999999999999999983979988679999965999958899998609843778636553230781364 Q ss_pred EEEEEEECCEEEEEEEEHHHHEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 99999849876689984424202306775303560346766543344456544444565566433444444455566555 Q gi|254780955|r 106 FEVGLSFSNVPERLVIPFNAIKGFYDPSVNFELEFDVHIEHIEEKLEGGNTGKVLTSPDNFDKNQTNSVSQDSSKKKSTK 185 (204) Q Consensus 106 FsV~LsF~g~~e~L~IPf~AIt~F~DPSV~FgLqF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (204) |||+|||||+||+|+|||+||++|+||||+|||||++..+.+++..+...... ..........+.++ T Consensus 82 FsV~LsFgg~pE~L~IPf~AI~~F~DPsv~F~L~Fe~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~ 148 (176) T 2nys_A 82 FEIGLSFSDTPEKLVIPYNAIRGFYDPSVNFELEFDVPLAKEEEXEEAEITAY-------------PVSHEAKPASETPK 148 (176) T ss_dssp EEEEEEETTEEEEEEEEGGGEEEEEEGGGTEEEECCCC------------------------------------------ T ss_pred EEEEEEECCEEEEEEEEHHHHHEEECCCCCCCEECCCCCCCCCCCCCCCCCCC-------------CCCCCCCCCCCCCC T ss_conf 89999759986999988688236267677864321886654444456666667-------------76655577767887 Q ss_pred CCCCCCCCCEEEEEECCCC Q ss_conf 6665677728983100269 Q gi|254780955|r 186 KQNKNKMASVISLDNFRKK 204 (204) Q Consensus 186 ~~~~~~~aeVVSLD~FRKK 204 (204) .....++|+|||||+|||| T Consensus 149 ~~~~~~~a~VVsLD~FRKK 167 (176) T 2nys_A 149 SGEEKKEGSVVSLDAFRKK 167 (176) T ss_dssp ------------------- T ss_pred CCCCCCCCCEEEECCCCCC T ss_conf 8787888999971310267 |
>1yfn_A (A:) Stringent starvation protein B; protein-peptide complex, SSPB, RSEA, protein binding; 1.80A {Escherichia coli} | Back alignment and structure |
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>1ou9_A (A:) Stringent starvation protein B homolog; SSRA peptide-binding protein, homodimer, transport protein; 1.80A {Haemophilus influenzae} | Back alignment and structure |
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>1ou8_A (A:) Stringent starvation protein B homolog; peptide-binding pocket, protein-peptide complex, homodimer, transport protein; 1.60A {Haemophilus influenzae} | Back alignment and structure |
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