254780965
hypothetical protein CLIBASIA_04330
| GeneID in NCBI database: | 8209987 | Locus tag: | CLIBASIA_04330 |
| Protein GI in NCBI database: | 254780965 | Protein Accession: | YP_003065378.1 |
| Gene range: | +(962650, 963339) | Protein Length: | 229aa |
| Gene description: | hypothetical protein | ||
| COG prediction: | none | ||
| KEGG prediction: | hypothetical protein | ||
| SEED prediction: | hypothetical protein | ||
| Pathway involved in KEGG: | not defined | ||
| Subsystem involved in SEED: | - none - | ||
| sequence | sequence profile | ||
Prediction of Local Sequence Properties
| Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
| Identity | Alignment graph | Length | Definition | Round | E-value |
| Target | 229 | hypothetical protein CLIBASIA_04330 [Candidatus Liberib | |||
| 315122772 | 213 | hypothetical protein CKC_05135 [Candidatus Liberibacter | 1 | 2e-25 | |
| 194367068 | 227 | hypothetical protein Smal_3296 [Stenotrophomonas maltop | 1 | 4e-23 | |
| 190575727 | 227 | hypothetical protein Smlt3880 [Stenotrophomonas maltoph | 1 | 9e-23 | |
| 254523697 | 227 | hypothetical protein SSKA14_2831 [Stenotrophomonas sp. | 1 | 2e-21 | |
| 303246407 | 212 | conserved hypothetical protein [Desulfovibrio fructosov | 1 | 1e-06 | |
| 298571448 | 188 | hypothetical protein LW5_0300 [uncultured Nitrospirae b | 2 | 3e-06 |
| >gi|315122772|ref|YP_004063261.1| hypothetical protein CKC_05135 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 213 | Back alignment and organism information |
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Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/215 (35%), Positives = 113/215 (52%), Gaps = 17/215 (7%)
Query: 7 IIILLVLVGVILAFYFQQSSTPQNHLL-FFSEKAVWKGDSETYFQCKRAHEFDENFDNCI 65
+ I LVL+ ++ + P H +EK+VW D +C E D C+
Sbjct: 9 LFITLVLISCDKKNVQKKENAPPPHSASVINEKSVWHDDLAN--KCASY----ETRDICL 62
Query: 66 ITSIKKTGGTQEALRAAQYLEKYLEPGYVSSYRKEALIGIVEVQYPYRANENSGTLLIPT 125
I I+K+G EAL+A QYL K E GYV S+RKE IGI E++YP+RAN N+ TLLIP
Sbjct: 63 IKEIEKSGSI-EALKAVQYLNKTREMGYVYSFRKEGPIGIAEIEYPFRANTNTTTLLIPP 121
Query: 126 VGSHIIDINDSSVHQLYD---SSPIAKDFVLRNPGVFPYSAGHFVKSSHKDGLIELIFSY 182
G I +YD +S + DF ++P + +K+ + IE IFS+
Sbjct: 122 AGKPIY------TEDIYDDLLTSKVWLDFKKQHPYSNIQDSAVLMKTEKNNDDIEFIFSF 175
Query: 183 PLRSCHGCEDIGFMDIAYKFTTKGAFIGRKVFGIR 217
+ +CHGCE+ + I+YKFT +G FI + ++
Sbjct: 176 RVGTCHGCEETARVYISYKFTHEGVFIKNNILYVK 210
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Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|194367068|ref|YP_002029678.1| hypothetical protein Smal_3296 [Stenotrophomonas maltophilia R551-3] Length = 227 | Back alignment and organism information |
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| >gi|190575727|ref|YP_001973572.1| hypothetical protein Smlt3880 [Stenotrophomonas maltophilia K279a] Length = 227 | Back alignment and organism information |
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| >gi|254523697|ref|ZP_05135752.1| hypothetical protein SSKA14_2831 [Stenotrophomonas sp. SKA14] Length = 227 | Back alignment and organism information |
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| >gi|303246407|ref|ZP_07332686.1| conserved hypothetical protein [Desulfovibrio fructosovorans JJ] Length = 212 | Back alignment and organism information |
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| >gi|298571448|gb|ADI87788.1| hypothetical protein LW5_0300 [uncultured Nitrospirae bacterium MY4-5C] Length = 188 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLAST against CDD database part II
No hit with e-value below 0.005
Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
No hit with probability above 90.00
Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
No homologous structure with e-value below 0.005
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 90.00
Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 90.00
Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
No hit with e-value below 0.005
Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
No hit with probability higher than 90.00