254781014
hypothetical protein CLIBASIA_04580
| GeneID in NCBI database: | 8210037 | Locus tag: | CLIBASIA_04580 |
| Protein GI in NCBI database: | 254781014 | Protein Accession: | YP_003065427.1 |
| Gene range: | -(1014403, 1014753) | Protein Length: | 116aa |
| Gene description: | hypothetical protein | ||
| COG prediction: | none | ||
| KEGG prediction: | hypothetical protein | ||
| SEED prediction: | hypothetical protein | ||
| Pathway involved in KEGG: | not defined | ||
| Subsystem involved in SEED: | - none - | ||
| sequence | sequence profile | ||
Prediction of Local Sequence Properties
| Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
| Identity | Alignment graph | Length | Definition | Round | E-value |
| Target | 116 | hypothetical protein CLIBASIA_04580 [Candidatus Liberib | |||
| 315122515 | 108 | hypothetical protein CKC_03835 [Candidatus Liberibacter | 1 | 1e-26 | |
| 209548486 | 164 | hypothetical protein Rleg2_0883 [Rhizobium leguminosaru | 1 | 8e-07 | |
| 222085299 | 153 | hypothetical protein Arad_1477 [Agrobacterium radiobact | 1 | 4e-06 | |
| 116251149 | 164 | hypothetical protein RL1381 [Rhizobium leguminosarum bv | 1 | 5e-06 | |
| 241203747 | 164 | hypothetical protein Rleg_1009 [Rhizobium leguminosarum | 1 | 5e-06 | |
| 86356891 | 162 | hypothetical protein RHE_CH01251 [Rhizobium etli CFN 42 | 1 | 3e-05 | |
| 190890964 | 164 | hypothetical protein RHECIAT_CH0001347 [Rhizobium etli | 1 | 4e-05 | |
| 218671799 | 164 | hypothetical protein RetlG_09167 [Rhizobium etli GR56] | 1 | 5e-05 | |
| 218663388 | 219 | hypothetical protein RetlI_30803 [Rhizobium etli IE4771 | 1 | 5e-05 | |
| 222147977 | 154 | hypothetical protein Avi_1303 [Agrobacterium vitis S4] | 1 | 6e-05 |
| >gi|315122515|ref|YP_004063004.1| hypothetical protein CKC_03835 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 108 | Back alignment and organism information |
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Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/107 (55%), Positives = 77/107 (71%)
Query: 1 MFWIAKKFFWISVLLIVLSNVYAQPFLEETEKGKKTEITDFMTATSGTVGYASNLCNAKP 60
MF+I KK FWIS+ IV+SN+Y + LE T++ +TEI D ++ TSGT+ YASN+CN KP
Sbjct: 1 MFFIFKKVFWISLFFIVISNLYPENSLENTKQNAETEIKDIISLTSGTISYASNICNEKP 60
Query: 61 EICLLWKKIMRNVKRHTLNGAKIVYGFAKSALEKNERESVAIHSKNE 107
E+C LW+K N K+HTL GAKI Y FAKS L+KNE +S SK +
Sbjct: 61 ELCSLWEKNFYNFKKHTLKGAKITYKFAKSILKKNEEKSSEFISKQQ 107
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Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|209548486|ref|YP_002280403.1| hypothetical protein Rleg2_0883 [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 164 | Back alignment and organism information |
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| >gi|222085299|ref|YP_002543829.1| hypothetical protein Arad_1477 [Agrobacterium radiobacter K84] Length = 153 | Back alignment and organism information |
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| >gi|116251149|ref|YP_766987.1| hypothetical protein RL1381 [Rhizobium leguminosarum bv. viciae 3841] Length = 164 | Back alignment and organism information |
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| >gi|241203747|ref|YP_002974843.1| hypothetical protein Rleg_1009 [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 164 | Back alignment and organism information |
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| >gi|86356891|ref|YP_468783.1| hypothetical protein RHE_CH01251 [Rhizobium etli CFN 42] Length = 162 | Back alignment and organism information |
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| >gi|190890964|ref|YP_001977506.1| hypothetical protein RHECIAT_CH0001347 [Rhizobium etli CIAT 652] Length = 164 | Back alignment and organism information |
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| >gi|218671799|ref|ZP_03521468.1| hypothetical protein RetlG_09167 [Rhizobium etli GR56] Length = 164 | Back alignment and organism information |
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| >gi|218663388|ref|ZP_03519318.1| hypothetical protein RetlI_30803 [Rhizobium etli IE4771] Length = 219 | Back alignment and organism information |
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| >gi|222147977|ref|YP_002548934.1| hypothetical protein Avi_1303 [Agrobacterium vitis S4] Length = 154 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLAST against CDD database part II
No hit with e-value below 0.005
Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
No hit with probability above 90.00
Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
No homologous structure with e-value below 0.005
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 90.00
Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 90.00
Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
No hit with e-value below 0.005
Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
No hit with probability higher than 90.00