254781047
AFG1-family ATPase
| GeneID in NCBI database: | 8210070 | Locus tag: | CLIBASIA_04745 |
| Protein GI in NCBI database: | 254781047 | Protein Accession: | YP_003065460.1 |
| Gene range: | +(1048492, 1049706) | Protein Length: | 404aa |
| Gene description: | AFG1-family ATPase | ||
| COG prediction: | [R] Predicted ATPase | ||
| KEGG prediction: | AFG1-family ATPase; K06916 | ||
| SEED prediction: | hypothetical protein | ||
| Pathway involved in KEGG: | not defined | ||
| Subsystem involved in SEED: | - none - | ||
| sequence | sequence profile | ||
Prediction of Local Sequence Properties
| Source | Summary | Result |
|---|
|
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
| Identity | Alignment graph | Length | Definition | Round | E-value |
| Target | 404 | AFG1-family ATPase [Candidatus Liberibacter asiaticus s | |||
| 315122385 | 312 | AFG1-family ATPase [Candidatus Liberibacter solanacearu | 1 | 1e-123 | |
| 241206659 | 387 | AFG1-family ATPase [Rhizobium leguminosarum bv. trifoli | 1 | 1e-94 | |
| 209551258 | 386 | AFG1-family ATPase [Rhizobium leguminosarum bv. trifoli | 1 | 1e-94 | |
| 116254172 | 387 | hypothetical protein RL4440 [Rhizobium leguminosarum bv | 1 | 8e-94 | |
| 218675177 | 387 | putative ATP-binding protein [Rhizobium etli GR56] Leng | 1 | 1e-93 | |
| 327188900 | 387 | putative ATP-binding protein [Rhizobium etli CNPAF512] | 1 | 1e-92 | |
| 190893740 | 387 | ATP-binding protein [Rhizobium etli CIAT 652] Length = | 1 | 7e-92 | |
| 325294009 | 387 | ATP-binding protein [Agrobacterium sp. H13-3] Length = | 1 | 9e-92 | |
| 159185306 | 387 | hypothetical protein Atu2640 [Agrobacterium tumefaciens | 1 | 1e-91 | |
| 86359473 | 387 | putative ATP-binding protein [Rhizobium etli CFN 42] Le | 1 | 6e-91 |
| >gi|315122385|ref|YP_004062874.1| AFG1-family ATPase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 312 | Back alignment and organism information |
|---|
Score = 444 bits (1143), Expect = e-123, Method: Compositional matrix adjust.
Identities = 214/311 (68%), Positives = 260/311 (83%)
Query: 81 MLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALES 140
MLMNLFF L P EKKC+ HFYEFMKDVH RII +RK+IE G I ESDPIPLVA+SIA E
Sbjct: 1 MLMNLFFELAPTEKKCKRHFYEFMKDVHCRIIFHRKQIESGAIRESDPIPLVANSIASEV 60
Query: 141 RVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIEL 200
+LCFDEFM+TNIADA+ILSRLF+ LF GC++V+TSNFIP+NLYKDEINR+V + FI +
Sbjct: 61 NLLCFDEFMVTNIADAVILSRLFSELFLRGCVVVVTSNFIPDNLYKDEINRDVFMPFINI 120
Query: 201 LEKKLEIISLDSGQDYRRKEQSILPIYMTPLNSYNRVLMDKLWAHITKGKKSLSLNISTE 260
L+K+LE+ISLDSGQDYRR+++ ILP+YM+PL+S+ LM+KLW H+ KG++SL LNIS +
Sbjct: 121 LKKELEVISLDSGQDYRRRKEKILPLYMSPLDSHTETLMNKLWDHMRKGQESLVLNISAK 180
Query: 261 GGYEIHVPFFCSRVSRFSFFDLCDRPLSANDFVEIANRFDVVIINDIPLLKEDRKDWIKR 320
GGY+IHVP RVSRFSFFDLCDR SANDFVEIA RFDVV I++IP LK DRKDWI+R
Sbjct: 181 GGYKIHVPSSFKRVSRFSFFDLCDRSFSANDFVEIAMRFDVVFIDNIPFLKGDRKDWIRR 240
Query: 321 FIMLIDVFYEHKIGLIISSEENIEDLFPYKLRKGAFEIQRTVSRLYEMFSAQYIGKNKII 380
FIMLIDVFYE+KI LI+SSE +I + F +L FE QRT+SRL+EMFS QY+ K+KI+
Sbjct: 241 FIMLIDVFYEYKICLIVSSEVDINNFFYDQLGTENFEFQRTISRLFEMFSVQYVSKHKIV 300
Query: 381 IDACKILLSNK 391
+DA K+LL NK
Sbjct: 301 MDAYKLLLLNK 311
|
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|241206659|ref|YP_002977755.1| AFG1-family ATPase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 387 | Back alignment and organism information |
|---|
Score = 351 bits (901), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 163/370 (44%), Positives = 248/370 (67%), Gaps = 2/370 (0%)
Query: 6 VSSRLISLIQDKKLKYNPAQESVVKSFDRLLVDLYKQQKQEQGIFSWLWNLRGIKRKYCS 65
V +L +L L+ + AQ V KS DR+L L KQ++ + W K+
Sbjct: 11 VCEQLKALTASGALQADSAQLDVAKSLDRVLAGL-KQRRPAAKSSALGWLFAAKKKSADG 69
Query: 66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILE 125
++G+Y+HG VG+GK+MLM++FFA+ P KK R HF+EFM DVH+RI +R+K++ GE +
Sbjct: 70 IKGLYIHGSVGRGKTMLMDMFFAMAPCRKKRRAHFHEFMADVHNRIAAHRRKLKNGETRQ 129
Query: 126 SDPIPLVASSIALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLY 185
+DP+P VA+++ E+ +LCFDEF +T+IADA+ILSRLF+ LF+ GC++V TSN P+NLY
Sbjct: 130 ADPMPPVAAALYDEAELLCFDEFTVTDIADAMILSRLFSELFARGCVLVATSNVEPDNLY 189
Query: 186 KDEINRNVLVSFIELLEKKLEIISLDSGQDYRRKEQSILPIYMTPLNSYNRVLMDKLWAH 245
D +NR + + F+ LL++ +++++LDS DYR ++ S P+Y+ P+N +N + MD W
Sbjct: 190 ADGLNRGLFLPFVALLKQYVDVVTLDSSTDYRMEKLSSQPVYLVPINEHNDMAMDASWTQ 249
Query: 246 ITKGKKSLSLNISTEGGYEIHVPFFCSRVSRFSFFDLCDRPLSANDFVEIANRFDVVIIN 305
G+K+ L+I +G + IHVP R++RFSF DLCD+PL A DF+ IA R+D V ++
Sbjct: 250 ALHGRKAQPLDIPMKGRH-IHVPLAVDRMARFSFADLCDKPLGAVDFLAIAERYDTVFVD 308
Query: 306 DIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIISSEENIEDLFPYKLRKGAFEIQRTVSRL 365
IPLL ++++ IKRFI+++D FY+H + L IS+ E+L + FE RT SRL
Sbjct: 309 HIPLLGPEKRNQIKRFIIMVDTFYDHAVRLYISAAAMPEELLLQRRGTEGFEFDRTASRL 368
Query: 366 YEMFSAQYIG 375
+EM SA+Y+
Sbjct: 369 FEMRSAEYLA 378
|
Species: Rhizobium leguminosarum Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|209551258|ref|YP_002283175.1| AFG1-family ATPase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 386 | Back alignment and organism information |
|---|
Score = 351 bits (900), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 166/370 (44%), Positives = 248/370 (67%), Gaps = 3/370 (0%)
Query: 6 VSSRLISLIQDKKLKYNPAQESVVKSFDRLLVDLYKQQKQEQGIFSWLWNLRGIKRKYCS 65
V +L SL L+ + AQ V KS DR+L L KQQ+ + W K+
Sbjct: 11 VCEQLKSLTLSGALQVDSAQMDVAKSLDRVLAGL-KQQRPAAKSSALGWLFAAKKKSAAG 69
Query: 66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILE 125
++G+Y+HG VG+GK+MLM++FF++ P +KK R HF+EFM DVH+RI +R K++ GE +
Sbjct: 70 IKGLYIHGSVGRGKTMLMDMFFSMAPCKKKRRAHFHEFMADVHNRIAAHRLKLKNGETKQ 129
Query: 126 SDPIPLVASSIALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLY 185
+DP+P VA+++ E+ +LCFDEF +T+IADA+ILSRLFA LF+ GC++V TSN P+NLY
Sbjct: 130 ADPMPPVAAALYEEAELLCFDEFTVTDIADAMILSRLFAELFARGCVLVATSNVQPDNLY 189
Query: 186 KDEINRNVLVSFIELLEKKLEIISLDSGQDYRRKEQSILPIYMTPLNSYNRVLMDKLWAH 245
D +NR + + F+ LL++ +++++LDS DYR ++ S P+Y+ P+N +N + MD W
Sbjct: 190 PDGLNRGLFLPFVALLKQHVDVVTLDSPTDYRMEKLSSQPVYLVPINDHNDMAMDASWTQ 249
Query: 246 ITKGKKSLSLNISTEGGYEIHVPFFCSRVSRFSFFDLCDRPLSANDFVEIANRFDVVIIN 305
G+K+ L+I +G + IHVP R++RFSF DLCD+PL A DF+ IA RFD V ++
Sbjct: 250 ALHGRKAQPLDIPMKGRH-IHVPLAVERMARFSFTDLCDKPLGAVDFLAIAERFDTVFLD 308
Query: 306 DIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIISSEENIEDLFPYKLRKGAFEIQRTVSRL 365
+PLL +R + IKRFI+++D FY+H + L IS+ E+L ++ FE RT SRL
Sbjct: 309 HVPLLGPER-NQIKRFIIMVDTFYDHAVRLYISAAAMPEELLLHRRGTEGFEFDRTASRL 367
Query: 366 YEMFSAQYIG 375
+EM SA+Y+
Sbjct: 368 FEMRSAEYLA 377
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Species: Rhizobium leguminosarum Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|116254172|ref|YP_770010.1| hypothetical protein RL4440 [Rhizobium leguminosarum bv. viciae 3841] Length = 387 | Back alignment and organism information |
|---|
Score = 348 bits (893), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 163/371 (43%), Positives = 248/371 (66%), Gaps = 4/371 (1%)
Query: 6 VSSRLISLIQDKKLKYNPAQESVVKSFDRLLVDLYKQQKQEQG-IFSWLWNLRGIKRKYC 64
V +L +L L+ + AQ V KS DR+L L +++ + WL+ + K+
Sbjct: 11 VCEQLKALTASGALQVDSAQMDVAKSLDRVLAGLKRRRPAAKSSALGWLFAAK--KKSAD 68
Query: 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEIL 124
++G+Y+HG VG+GK+MLM++FFA+ P KK R HF+EFM DVH+RI +R K++ GE
Sbjct: 69 GIKGLYIHGSVGRGKTMLMDMFFAMAPCRKKRRAHFHEFMADVHNRIAAHRLKLKNGETT 128
Query: 125 ESDPIPLVASSIALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENL 184
++DP+P VA+++ E+ +LCFDEF +T+IADA+ILSRLF+ LF+ GC++V TSN P+NL
Sbjct: 129 QADPMPPVAAALYDEAELLCFDEFTVTDIADAMILSRLFSELFARGCVLVATSNVEPDNL 188
Query: 185 YKDEINRNVLVSFIELLEKKLEIISLDSGQDYRRKEQSILPIYMTPLNSYNRVLMDKLWA 244
Y D +NR + + F+ LL++ +++++L S DYR ++ S P+Y+ P+N +N + MD W
Sbjct: 189 YMDGLNRGLFLPFVALLKQHVDVVTLGSPTDYRMEKLSSQPVYLVPINEHNDMAMDASWT 248
Query: 245 HITKGKKSLSLNISTEGGYEIHVPFFCSRVSRFSFFDLCDRPLSANDFVEIANRFDVVII 304
G+K+ L+I +G + IHVP R++RFSF DLCD+PL A DF+ IA RFD V +
Sbjct: 249 QALHGRKAQPLDIPMKGRH-IHVPLAVDRMARFSFADLCDKPLGAVDFLAIAERFDTVFV 307
Query: 305 NDIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIISSEENIEDLFPYKLRKGAFEIQRTVSR 364
+ IPLL ++++ IKRFI+L+D FY+H + L IS+ E+L + FE RT SR
Sbjct: 308 DHIPLLGPEKRNQIKRFIILVDTFYDHAVRLYISAAAMPEELLLQRRGTEGFEFDRTASR 367
Query: 365 LYEMFSAQYIG 375
L+EM SA+Y+
Sbjct: 368 LFEMRSAEYLA 378
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Species: Rhizobium leguminosarum Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|218675177|ref|ZP_03524846.1| putative ATP-binding protein [Rhizobium etli GR56] Length = 387 | Back alignment and organism information |
|---|
Score = 348 bits (892), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 162/370 (43%), Positives = 246/370 (66%), Gaps = 2/370 (0%)
Query: 6 VSSRLISLIQDKKLKYNPAQESVVKSFDRLLVDLYKQQKQEQGIFSWLWNLRGIKRKYCS 65
V +L SL L+ + AQ V KS DR+L L KQQ+ + W K+
Sbjct: 11 VCEQLKSLTLSGALQVDSAQMDVAKSLDRVLAGL-KQQRPAAKSSALGWLFASKKKAVGG 69
Query: 66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILE 125
++G+Y+HG VG+GK+MLM++FF++ P KK R HF+EFM DVH+RI +R K++ GE +
Sbjct: 70 IKGLYIHGSVGRGKTMLMDMFFSMAPCRKKRRAHFHEFMADVHNRIAAHRLKLKNGETKQ 129
Query: 126 SDPIPLVASSIALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLY 185
+DPIP VA+++ E+ +LCFDEF +T+IADA+ILSRLF+ LF+ GC++V TSN P+NLY
Sbjct: 130 ADPIPPVAAALYEEAELLCFDEFTVTDIADAMILSRLFSELFARGCVLVATSNVEPDNLY 189
Query: 186 KDEINRNVLVSFIELLEKKLEIISLDSGQDYRRKEQSILPIYMTPLNSYNRVLMDKLWAH 245
KD +NR + + F+ LL + +++++LDS DYR ++ + P+Y+ P+N +N + M+ W
Sbjct: 190 KDGLNRGLFLPFVALLRQHVDVVTLDSPTDYRMEKLNSQPVYLVPINEHNDMAMEASWTQ 249
Query: 246 ITKGKKSLSLNISTEGGYEIHVPFFCSRVSRFSFFDLCDRPLSANDFVEIANRFDVVIIN 305
G+K+ L+I + G IHVP R++RFSF DLC++PL A DF+ IA RFD+V ++
Sbjct: 250 ALHGRKAQPLDIPMK-GRAIHVPLAADRMARFSFADLCEKPLGAADFLAIAKRFDIVFVD 308
Query: 306 DIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIISSEENIEDLFPYKLRKGAFEIQRTVSRL 365
+PLL ++++ IKRFI+++D FY+H + L +S+ E L + FE RT SRL
Sbjct: 309 HVPLLGPEKRNQIKRFIIMVDTFYDHAVRLYMSAAAMPEGLLVGRRGTEGFEFDRTASRL 368
Query: 366 YEMFSAQYIG 375
+EM SA+Y+
Sbjct: 369 FEMRSAEYLA 378
|
Species: Rhizobium etli Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|327188900|gb|EGE56092.1| putative ATP-binding protein [Rhizobium etli CNPAF512] Length = 387 | Back alignment and organism information |
|---|
Score = 344 bits (883), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 159/370 (42%), Positives = 247/370 (66%), Gaps = 2/370 (0%)
Query: 6 VSSRLISLIQDKKLKYNPAQESVVKSFDRLLVDLYKQQKQEQGIFSWLWNLRGIKRKYCS 65
V +L +L L+ + AQ V KS DR+L L KQQ+ + W K+ S
Sbjct: 11 VCEQLKTLTLSGALQVDSAQMDVAKSLDRVLAGL-KQQRPAAKSSALGWLFASKKKAAGS 69
Query: 66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILE 125
++G+Y+HG VG+GK+MLM++FF++ P +KK R HF+EFM DVH+RI +R K++ GE +
Sbjct: 70 IKGLYIHGSVGRGKTMLMDMFFSMAPCKKKRRAHFHEFMADVHNRIAAHRLKLKNGETKQ 129
Query: 126 SDPIPLVASSIALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLY 185
+DP+P VA+++ E+ +LCFDEF +T+IADA+ILSRLF+ LF+ GC++V TSN P+NLY
Sbjct: 130 ADPMPPVAAALYEEAELLCFDEFTVTDIADAMILSRLFSELFARGCVLVATSNVEPDNLY 189
Query: 186 KDEINRNVLVSFIELLEKKLEIISLDSGQDYRRKEQSILPIYMTPLNSYNRVLMDKLWAH 245
D +NR + + F+ LL++ +++++LDS DYR ++ + P+Y+ P+N +N + M+ W
Sbjct: 190 SDGLNRGLFLPFVALLKQHVDVVTLDSPTDYRMEKLNSQPVYLVPINDHNDMAMEASWTQ 249
Query: 246 ITKGKKSLSLNISTEGGYEIHVPFFCSRVSRFSFFDLCDRPLSANDFVEIANRFDVVIIN 305
G+K+ L+I + G IHVP R++RFSF DLC++P A DF+ IA RFD + ++
Sbjct: 250 ALHGRKAQPLDIPMK-GRSIHVPLAADRMARFSFADLCEKPHGAADFLAIAERFDTIFLD 308
Query: 306 DIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIISSEENIEDLFPYKLRKGAFEIQRTVSRL 365
+PLL ++++ IKRFI+L+D Y+H + L IS+ E+L ++ FE RT SRL
Sbjct: 309 HVPLLGPEKRNQIKRFIILVDTLYDHAVRLYISAAAMPEELLVHRRGTEGFEFDRTASRL 368
Query: 366 YEMFSAQYIG 375
+EM SA+Y+
Sbjct: 369 FEMRSAEYLA 378
|
Species: Rhizobium etli Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|190893740|ref|YP_001980282.1| ATP-binding protein [Rhizobium etli CIAT 652] Length = 387 | Back alignment and organism information |
|---|
Score = 342 bits (877), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 157/370 (42%), Positives = 246/370 (66%), Gaps = 2/370 (0%)
Query: 6 VSSRLISLIQDKKLKYNPAQESVVKSFDRLLVDLYKQQKQEQGIFSWLWNLRGIKRKYCS 65
V +L +L L+ + AQ V KS DR+L L KQQ+ + W K+
Sbjct: 11 VCEQLKTLTLSGALQVDSAQMDVAKSLDRVLAGL-KQQRPAAKSSALGWLFASKKKAAGR 69
Query: 66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILE 125
++G+Y+HG VG+GK+MLM++FF++ P +KK R HF+EFM DVH+RI +R K++ GE +
Sbjct: 70 IKGLYIHGSVGRGKTMLMDMFFSMAPCKKKRRAHFHEFMADVHNRIAAHRLKLKNGETKQ 129
Query: 126 SDPIPLVASSIALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLY 185
+DP+P VA+++ E+ +LCFDEF +T+IADA+ILSRLF+ LF+ GC++V TSN P+NLY
Sbjct: 130 ADPMPPVAAALYEEAELLCFDEFTVTDIADAMILSRLFSELFARGCVLVATSNVEPDNLY 189
Query: 186 KDEINRNVLVSFIELLEKKLEIISLDSGQDYRRKEQSILPIYMTPLNSYNRVLMDKLWAH 245
D +NR + + F+ LL++ +++++LDS DYR ++ + P+Y+ P+N +N + M+ W
Sbjct: 190 SDGLNRGLFLPFVALLKQHVDVVTLDSPTDYRMEKLNSQPVYLVPINDHNDMAMEASWTQ 249
Query: 246 ITKGKKSLSLNISTEGGYEIHVPFFCSRVSRFSFFDLCDRPLSANDFVEIANRFDVVIIN 305
G+K+ L+I + G IHVP R++RFSF DLC++PL A DF+ IA RFD + ++
Sbjct: 250 ALHGRKAQPLDIPMK-GRSIHVPLAADRMARFSFADLCEKPLGAADFLAIAERFDTIFLD 308
Query: 306 DIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIISSEENIEDLFPYKLRKGAFEIQRTVSRL 365
+PLL ++++ IKRFI+L+D Y+H + + IS+ E+L ++ FE RT SRL
Sbjct: 309 HVPLLGPEKRNQIKRFIILVDTLYDHAVRVYISAAAMPEELLVHRRGTEGFEFDRTASRL 368
Query: 366 YEMFSAQYIG 375
+EM S +Y+
Sbjct: 369 FEMRSTEYLA 378
|
Species: Rhizobium etli Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|325294009|ref|YP_004279873.1| ATP-binding protein [Agrobacterium sp. H13-3] Length = 387 | Back alignment and organism information |
|---|
Score = 342 bits (876), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 160/370 (43%), Positives = 241/370 (65%), Gaps = 4/370 (1%)
Query: 6 VSSRLISLIQDKKLKYNPAQESVVKSFDRLLVDL-YKQQKQEQGIFSWLWNLRGIKRKYC 64
V +L +L L+ + AQ V DR+L DL ++ +++ W++ + +
Sbjct: 11 VVEQLNALTAAGTLQADAAQRGVAAHLDRILADLKARKPARKKSALGWMFARKAGPAAF- 69
Query: 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEIL 124
++G+Y+HG VG+GK+MLM++F+ + P+ K R HF+EFM DVH+R+ +R+K++ GE
Sbjct: 70 -VKGLYVHGSVGRGKTMLMDMFYEMAPVSSKRRCHFHEFMADVHNRVHAHRQKLKNGETK 128
Query: 125 ESDPIPLVASSIALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENL 184
++DPIP VA+ + E+ +LCFDEF +T+IADA+IL+RLF+ LF++GC +V TSN +P+NL
Sbjct: 129 QADPIPPVAAQLLAEAELLCFDEFTVTDIADAMILARLFSELFANGCTLVTTSNVVPDNL 188
Query: 185 YKDEINRNVLVSFIELLEKKLEIISLDSGQDYRRKEQSILPIYMTPLNSYNRVLMDKLWA 244
YKD +NR + + F++LL+K +E+++LDS DYR ++ LP+Y+TPL+ MD W
Sbjct: 189 YKDGLNRGLFLPFVDLLKKHVEVVTLDSPTDYRMEKLESLPVYVTPLDGAADQAMDMAWR 248
Query: 245 HITKGKKSLSLNISTEGGYEIHVPFFCSRVSRFSFFDLCDRPLSANDFVEIANRFDVVII 304
H+T G I + G I VP RV+RFSF DLC++PL A+DF+ IANRFD V I
Sbjct: 249 HMTGGHLVAPTEIPMK-GRSILVPRASGRVARFSFSDLCEKPLGASDFLAIANRFDTVFI 307
Query: 305 NDIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIISSEENIEDLFPYKLRKGAFEIQRTVSR 364
+ IP L D+++ KRFI+LID Y+H + L S+ EDL + FE RT SR
Sbjct: 308 DHIPFLNADKRNETKRFIILIDALYDHSVRLFASAAAMPEDLLGKRKGTEGFEFDRTASR 367
Query: 365 LYEMFSAQYI 374
L+EM SA Y+
Sbjct: 368 LFEMRSADYL 377
|
Species: Agrobacterium sp. H13-3 Genus: Agrobacterium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|159185306|ref|NP_355577.2| hypothetical protein Atu2640 [Agrobacterium tumefaciens str. C58] Length = 387 | Back alignment and organism information |
|---|
Score = 341 bits (874), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 161/371 (43%), Positives = 242/371 (65%), Gaps = 4/371 (1%)
Query: 6 VSSRLISLIQDKKLKYNPAQESVVKSFDRLLVDL-YKQQKQEQGIFSWLWNLRGIKRKYC 64
V +L +L L+ + AQ V DR+L DL ++ +++ W++ + +
Sbjct: 11 VVEQLNALTAAGTLQADAAQLGVAAHLDRILADLKARKPARKKSALGWMFARKAGPAAF- 69
Query: 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEIL 124
++G+Y+HG VG+GK+MLM++F+ + P+ K R HF+EFM DVH+R+ +R+K++ GE
Sbjct: 70 -VKGLYVHGSVGRGKTMLMDMFYEMAPVSSKRRCHFHEFMADVHNRVHTHRQKLKNGETK 128
Query: 125 ESDPIPLVASSIALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENL 184
++DPIP VA+ + E+ +LCFDEF +T+IADA+IL+RLF+ LF++GC +V TSN +P+NL
Sbjct: 129 QADPIPPVAAQLLAEAELLCFDEFTVTDIADAMILARLFSELFANGCTLVTTSNVVPDNL 188
Query: 185 YKDEINRNVLVSFIELLEKKLEIISLDSGQDYRRKEQSILPIYMTPLNSYNRVLMDKLWA 244
YKD +NR + + F++LL+K +E+++LDS DYR ++ LP+Y+TPL+ MD W
Sbjct: 189 YKDGLNRGLFLPFVDLLKKYVEVVTLDSPTDYRMEKLESLPVYITPLDGSADQAMDMAWR 248
Query: 245 HITKGKKSLSLNISTEGGYEIHVPFFCSRVSRFSFFDLCDRPLSANDFVEIANRFDVVII 304
H+T G I + G I VP RV+RFSF DLC++PL A+DF+ IANRFD V I
Sbjct: 249 HMTAGHLVAPTEIPMK-GRSILVPRASGRVARFSFSDLCEKPLGASDFLAIANRFDTVFI 307
Query: 305 NDIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIISSEENIEDLFPYKLRKGAFEIQRTVSR 364
+ IPLL D+++ KRFI+LID Y+H + L S+ EDL + FE RT SR
Sbjct: 308 DHIPLLNADKRNETKRFIILIDALYDHTVRLFASAAAMPEDLLGKRKGTEGFEFDRTASR 367
Query: 365 LYEMFSAQYIG 375
L+EM SA Y+
Sbjct: 368 LFEMRSADYLA 378
|
Species: Agrobacterium tumefaciens Genus: Agrobacterium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|86359473|ref|YP_471365.1| putative ATP-binding protein [Rhizobium etli CFN 42] Length = 387 | Back alignment and organism information |
|---|
Score = 339 bits (869), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 157/370 (42%), Positives = 245/370 (66%), Gaps = 2/370 (0%)
Query: 6 VSSRLISLIQDKKLKYNPAQESVVKSFDRLLVDLYKQQKQEQGIFSWLWNLRGIKRKYCS 65
V +L +L L+ + AQ V KS DR+L L KQQ+ + W K+
Sbjct: 11 VCEQLKTLTLSGALQVDSAQMEVAKSLDRVLAGL-KQQRPAAKSSALGWLFASKKKAAGG 69
Query: 66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILE 125
++G+Y+HG VG+GK+MLM++FF++ P KK R HF+EFM DVH+RI +R K++ GE +
Sbjct: 70 IKGLYIHGSVGRGKTMLMDMFFSMAPCRKKRRAHFHEFMADVHNRIAAHRLKLKNGETKQ 129
Query: 126 SDPIPLVASSIALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLY 185
+DP+P VA+++ E+ +LCFDEF +T+IADA+ILSRLF+ LF+ GC++V TSN P++LY
Sbjct: 130 ADPMPPVAAALYEEAELLCFDEFTVTDIADAMILSRLFSELFARGCVLVATSNVEPDSLY 189
Query: 186 KDEINRNVLVSFIELLEKKLEIISLDSGQDYRRKEQSILPIYMTPLNSYNRVLMDKLWAH 245
+D +NR + + F+ LL++ ++I++LDS DYR ++ + P+Y+ P+N +N + M+ W
Sbjct: 190 RDGLNRGLFLPFVALLKQHVDIVTLDSPTDYRMEKLNSQPVYLVPINEHNDMAMEASWTQ 249
Query: 246 ITKGKKSLSLNISTEGGYEIHVPFFCSRVSRFSFFDLCDRPLSANDFVEIANRFDVVIIN 305
G+K+ L+I + G IHVP R++RFSF DLC++P A DF+ IA RFD + ++
Sbjct: 250 ALHGRKAQPLDIPMK-GRSIHVPLAADRMARFSFADLCEKPHGAADFLAIAERFDTIFLD 308
Query: 306 DIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIISSEENIEDLFPYKLRKGAFEIQRTVSRL 365
+PLL ++++ IKRFI+L+D Y+ + L IS+ E+L ++ FE RT SRL
Sbjct: 309 HVPLLGPEKRNQIKRFIILVDTLYDQAVRLYISAAAMPEELLVHRRGTEGFEFDRTASRL 368
Query: 366 YEMFSAQYIG 375
+EM SA+Y+
Sbjct: 369 FEMRSAEYLA 378
|
Species: Rhizobium etli Genus: Rhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
| Identity | Alignment graph | Length | Definition | E-value |
| Target | 404 | AFG1-family ATPase [Candidatus Liberibacter asiaticus s | ||
| pfam03969 | 361 | pfam03969, AFG1_ATPase, AFG1-like ATPase | 5e-78 | |
| KOG2383 | 467 | KOG2383, KOG2383, KOG2383, Predicted ATPase [General fu | 5e-74 | |
| COG1485 | 367 | COG1485, COG1485, Predicted ATPase [General function pr | 4e-92 |
| >gnl|CDD|112768 pfam03969, AFG1_ATPase, AFG1-like ATPase | Back alignment and domain information |
|---|
Score = 287 bits (735), Expect = 5e-78
Identities = 131/372 (35%), Positives = 197/372 (52%), Gaps = 19/372 (5%)
Query: 8 SRLISLIQDKKLKYNPAQESVVKSFDRLLVDLYKQQKQEQ-GIFSWLWNLRGIKRKYCSM 66
R + +Q + + AQ + V + DRL L Q G LW G KR + +
Sbjct: 5 QRYTAQLQRGAIFPDVAQANAVPALDRLYQRLQAADFVRQSGAGGKLW---GRKRSHQPV 61
Query: 67 QGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILES 126
+G+YL G VG+GK+ LM+ FF +P E+K R HF+ FM VH + +
Sbjct: 62 RGLYLWGGVGRGKTHLMDSFFESLPGERKRRTHFHRFMFRVHDEL-TTLQG-------GD 113
Query: 127 DPIPLVASSIALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYK 186
DP+P+ A A E+R+LCFDEF + +I DA+IL RLF ALF+ G +V TSN PE LY+
Sbjct: 114 DPLPIAADRFANEARLLCFDEFEVDDIGDAMILGRLFEALFARGVSLVATSNTAPEQLYR 173
Query: 187 DEINRNVLVSFIELLEKKLEIISLDSGQDYRRKEQSILPIYMTPLNSYNRVLMDKLWAHI 246
+ +NR + I+LLE E++ +D DYR + P+++ PL+ +D+LW +
Sbjct: 174 NGLNRQRFLPAIDLLESHFEVVRVDGPVDYRLRTLEQAPLWLYPLDGAAWAALDRLWDAL 233
Query: 247 TKGKKSLSLNISTE--GGYEIHVPFFCSRVSRFSFFDLCDRPLSANDFVEIANRFDVVII 304
T G+ +ST + FSF DLC P +D++ +A RF V +
Sbjct: 234 TLGEPQ---PLSTLEVAARLARARAAGGDLVWFSFADLCLAPRHPSDYLALAERFSTVFL 290
Query: 305 NDIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIISSEENIEDLFPYKLRKGAFEIQRTVSR 364
D+P + +D +RFI L+D Y+ + L+ S+E ++DL+ AFE QRT+SR
Sbjct: 291 TDVPPMTRCSQDEARRFIALVDELYDRHVKLVASAEAALDDLYRGGR--LAFEFQRTLSR 348
Query: 365 LYEMFSAQYIGK 376
L EM S Y+ +
Sbjct: 349 LLEMQSEDYLAR 360
|
This family of proteins contains a P-loop motif and are predicted to be ATPases. Length = 361 |
| >gnl|CDD|37594 KOG2383, KOG2383, KOG2383, Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 273 bits (700), Expect = 5e-74
Identities = 141/419 (33%), Positives = 215/419 (51%), Gaps = 56/419 (13%)
Query: 12 SLIQDKKLKYNPAQESVVKSFDRL---LVDLY----KQQKQEQGIFSWLWNLR------- 57
L+ LK +P Q V +F+RL L++ Y KQ ++ W++ L+
Sbjct: 42 KLVNTGTLKSDPYQRKTVSAFERLYHELIEYYDPRLKQWSAKREEGRWIFELKKSFDDGK 101
Query: 58 ----GIKRKYCSMQGIYLHGDVGQGKSMLMNLFF-ALVPIEKKCRLHFYEFMKDVHSRII 112
+ +G+YL+G VG GK+MLM+LF+ AL PI +K R+HF+ FM VH R+
Sbjct: 102 LDTPNASGQPGPPKGLYLYGSVGCGKTMLMDLFYDALPPIWRKQRVHFHGFMLSVHKRMH 161
Query: 113 MYRK-----KIEFGEILESDPIPLVASSIALESRVLCFDEFMITNIADAIILSRLFAALF 167
++ K + + E DP+P+VA IA E+ +LCFDEF +T++ADA+IL RLF LF
Sbjct: 162 ELKQEQGAEKPGYAKSWEIDPLPVVADEIAEEAILLCFDEFQVTDVADAMILKRLFEHLF 221
Query: 168 SHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDSGQDYRRKEQSILPIY 227
+G ++V TSN PE+LYK+ + R + FI LLE++ ++I LDSG DYRRK +S Y
Sbjct: 222 KNGVVLVATSNRAPEDLYKNGLQRENFIPFIALLEERCKVIQLDSGVDYRRKAKSAGENY 281
Query: 228 MTPLNSYNRVLMDKLW-AHITKGKKSLSLNISTEGGYEIHVPFFCSRVSRFSFFDLCDRP 286
+ ++ + + G ++ VP C V+ F+F +LC RP
Sbjct: 282 YFISETDVETVLKEWFKLLAADQNDGTRQRTLVVFGRKLIVPKACGGVADFTFEELCGRP 341
Query: 287 LSANDFVEIANRFDVVIINDIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIISSEENIEDL 346
L A D++ +A F +I+ DIP L + +D +RFI LID Y++ + L+ S+ +E+L
Sbjct: 342 LGAADYLGLAKNFHTIIVRDIPQLSLENRDQARRFITLIDALYDNHVRLVCSAATPLEEL 401
Query: 347 FPYK------------LRKG-------------------AFEIQRTVSRLYEMFSAQYI 374
F + L F RT+SRLYEM + Y
Sbjct: 402 FQFTGHSEALSDSPRTLMDDLGIKSDSAGGSPMFSGEEEGFAFDRTLSRLYEMQTELYW 460
|
Length = 467 |
| >gnl|CDD|31674 COG1485, COG1485, Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 333 bits (856), Expect = 4e-92
Identities = 138/371 (37%), Positives = 215/371 (57%), Gaps = 17/371 (4%)
Query: 6 VSSRLISLIQDKKLKYNPAQESVVKSFDRLLVDLYKQQKQEQGIFSWLWNLRGIKRKYCS 65
R L+ + +PAQ + + DRL D + + WL+ R +
Sbjct: 11 PVERYAQLVPAGTFQPDPAQPAAAAALDRLY-DELVAPRSARKALGWLF-----GRDHGP 64
Query: 66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILE 125
++G+YL G VG+GK+MLM+LF+ +P E+K RLHF+ FM VH R+ + +
Sbjct: 65 VRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQG--------Q 116
Query: 126 SDPIPLVASSIALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLY 185
+DP+P +A +A E+RVLCFDEF +T+IADA+IL RL ALF+ G ++V TSN P+NLY
Sbjct: 117 TDPLPPIADELAAETRVLCFDEFEVTDIADAMILGRLLEALFARGVVLVATSNTAPDNLY 176
Query: 186 KDEINRNVLVSFIELLEKKLEIISLDSGQDYRRKEQSILPIYMTPLNSYNRVLMDKLWAH 245
KD + R + I+L++ E++++D DYR ++ P+Y+TPL++ +DKLWA
Sbjct: 177 KDGLQRERFLPAIDLIKSHFEVVNVDGPVDYRLRKLEQAPVYLTPLDAEAEAALDKLWAA 236
Query: 246 ITKGKKSLSLNISTEGGYEIHVPFFCSRVSRFSFFDLCDRPLSANDFVEIANRFDVVIIN 305
++ G + N+ G EI VP + F F LC+ P SA+D++ +A RF V +
Sbjct: 237 LSDGAPEAAANL-EIKGREIRVPAVAGGLLWFDFAQLCEAPRSASDYLALAERFHTVFLT 295
Query: 306 DIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIISSEENIEDLFPYKLRKGAFEIQRTVSRL 365
D+P + +D +RFI L+D Y+ + L+ S+E + +L+ + AFE QRT+SRL
Sbjct: 296 DVPQMDPLDRDEARRFIALVDELYDRGVKLVASAEVPLNELYQGG--RLAFEFQRTLSRL 353
Query: 366 YEMFSAQYIGK 376
EM S +Y+G
Sbjct: 354 QEMQSEEYLGI 364
|
Length = 367 |
Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
| Identity | Alignment graph | Length | Definition | Probability |
| Target | 404 | AFG1-family ATPase [Candidatus Liberibacter asiaticus s | ||
| pfam03969 | 361 | AFG1_ATPase AFG1-like ATPase. This family of proteins c | 100.0 | |
| COG1485 | 367 | Predicted ATPase [General function prediction only] | 100.0 | |
| KOG2383 | 467 | consensus | 100.0 | |
| PRK08939 | 306 | primosomal protein DnaI; Reviewed | 99.52 | |
| PRK08116 | 262 | hypothetical protein; Validated | 99.46 | |
| COG1484 | 254 | DnaC DNA replication protein [DNA replication, recombin | 99.15 | |
| PRK06526 | 254 | transposase; Provisional | 99.05 | |
| PRK09183 | 258 | transposase/IS protein; Provisional | 99.03 | |
| COG0593 | 408 | DnaA ATPase involved in DNA replication initiation [DNA | 99.02 | |
| PRK08181 | 269 | transposase; Validated | 98.96 | |
| PRK07952 | 242 | DNA replication protein DnaC; Validated | 98.94 | |
| PRK06835 | 330 | DNA replication protein DnaC; Validated | 98.87 | |
| pfam01695 | 178 | IstB IstB-like ATP binding protein. This protein contai | 98.82 | |
| PRK12377 | 248 | putative replication protein; Provisional | 98.78 | |
| PRK06921 | 265 | hypothetical protein; Provisional | 98.72 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 98.7 | |
| KOG0733 | 802 | consensus | 98.27 | |
| CHL00176 | 631 | ftsH cell division protein; Validated | 98.14 | |
| KOG0727 | 408 | consensus | 98.07 | |
| COG1222 | 406 | RPT1 ATP-dependent 26S proteasome regulatory subunit [P | 97.99 | |
| PRK04195 | 403 | replication factor C large subunit; Provisional | 97.89 | |
| KOG0730 | 693 | consensus | 97.88 | |
| PRK10733 | 644 | hflB ATP-dependent metalloprotease; Reviewed | 97.87 | |
| PRK11034 | 758 | clpA ATP-dependent Clp protease ATP-binding subunit; Pr | 97.67 | |
| KOG0733 | 802 | consensus | 97.63 | |
| KOG0651 | 388 | consensus | 97.62 | |
| TIGR01242 | 364 | 26Sp45 26S proteasome subunit P45 family; InterPro: IPR | 97.53 | |
| COG1223 | 368 | Predicted ATPase (AAA+ superfamily) [General function p | 97.49 | |
| PRK10865 | 857 | protein disaggregation chaperone; Provisional | 97.45 | |
| PRK12402 | 337 | replication factor C small subunit 2; Reviewed | 97.36 | |
| PRK13342 | 417 | recombination factor protein RarA; Reviewed | 97.3 | |
| PRK00440 | 318 | rfc replication factor C small subunit; Reviewed | 97.23 | |
| PRK13341 | 726 | recombination factor protein RarA/unknown domain fusion | 96.72 | |
| pfam00158 | 168 | Sigma54_activat Sigma-54 interaction domain. | 96.7 | |
| COG0470 | 325 | HolB ATPase involved in DNA replication [DNA replicatio | 96.67 | |
| PRK11331 | 459 | 5-methylcytosine-specific restriction enzyme subunit Mc | 96.61 | |
| COG0465 | 596 | HflB ATP-dependent Zn proteases [Posttranslational modi | 96.35 | |
| TIGR00362 | 493 | DnaA chromosomal replication initiator protein DnaA; In | 96.26 | |
| TIGR01243 | 980 | CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR | 96.02 | |
| KOG0728 | 404 | consensus | 95.88 | |
| COG2256 | 436 | MGS1 ATPase related to the helicase subunit of the Holl | 95.7 | |
| KOG2028 | 554 | consensus | 95.65 | |
| PRK10923 | 469 | glnG nitrogen regulation protein NR(I); Provisional | 95.58 | |
| PRK10787 | 784 | DNA-binding ATP-dependent protease La; Provisional | 95.44 | |
| PRK11608 | 325 | pspF phage shock protein operon transcriptional activat | 95.4 | |
| PRK07270 | 557 | DNA polymerase III subunits gamma and tau; Validated | 95.36 | |
| PRK10820 | 513 | DNA-binding transcriptional regulator TyrR; Provisional | 95.34 | |
| pfam05621 | 302 | TniB Bacterial TniB protein. This family consists of se | 95.27 | |
| KOG2004 | 906 | consensus | 95.17 | |
| TIGR02903 | 616 | spore_lon_C ATP-dependent protease, Lon family; InterPr | 95.11 | |
| PRK05022 | 510 | anaerobic nitric oxide reductase transcription regulato | 95.08 | |
| KOG0731 | 774 | consensus | 94.83 | |
| PRK11361 | 457 | acetoacetate metabolism regulatory protein AtoC; Provis | 94.35 | |
| PRK13531 | 498 | regulatory ATPase RavA; Provisional | 94.29 | |
| PRK10365 | 441 | transcriptional regulatory protein ZraR; Provisional | 94.19 | |
| TIGR02902 | 532 | spore_lonB ATP-dependent protease LonB; InterPro: IPR01 | 94.14 | |
| PRK05917 | 290 | DNA polymerase III subunit delta'; Validated | 94.05 | |
| PRK07399 | 314 | DNA polymerase III subunit delta'; Validated | 93.99 | |
| PRK06305 | 462 | DNA polymerase III subunits gamma and tau; Validated | 93.9 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, ATP- | 93.08 | |
| PRK08451 | 523 | DNA polymerase III subunits gamma and tau; Validated | 92.8 | |
| KOG1514 | 767 | consensus | 92.63 | |
| PRK05896 | 613 | DNA polymerase III subunits gamma and tau; Validated | 92.42 | |
| KOG2227 | 529 | consensus | 92.24 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding protein; P | 92.18 | |
| PRK08058 | 329 | DNA polymerase III subunit delta'; Validated | 92.06 | |
| PRK08769 | 319 | DNA polymerase III subunit delta'; Validated | 91.95 | |
| COG2204 | 464 | AtoC Response regulator containing CheY-like receiver, | 91.67 | |
| PRK05564 | 313 | DNA polymerase III subunit delta'; Validated | 90.82 | |
| KOG0989 | 346 | consensus | 90.53 | |
| PRK06090 | 319 | DNA polymerase III subunit delta'; Validated | 90.32 | |
| PRK00149 | 447 | dnaA chromosomal replication initiation protein; Review | 99.18 | |
| PRK12422 | 455 | chromosomal replication initiation protein; Provisional | 99.15 | |
| pfam00308 | 219 | Bac_DnaA Bacterial dnaA protein. | 98.96 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 98.94 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 98.92 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Members | 98.92 | |
| PRK08903 | 227 | hypothetical protein; Validated | 98.81 | |
| PRK08727 | 233 | hypothetical protein; Validated | 98.72 | |
| PRK03992 | 390 | proteasome-activating nucleotidase; Provisional | 98.69 | |
| CHL00195 | 491 | ycf46 Ycf46; Provisional | 98.68 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide variety of | 98.63 | |
| PRK09087 | 226 | hypothetical protein; Validated | 98.36 | |
| PRK06620 | 214 | hypothetical protein; Validated | 98.36 | |
| pfam07728 | 139 | AAA_5 AAA domain (dynein-related subfamily). This Pfam | 98.19 | |
| pfam00004 | 131 | AAA ATPase family associated with various cellular acti | 97.96 | |
| COG0464 | 494 | SpoVK ATPases of the AAA+ class [Posttranslational modi | 97.84 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 97.79 | |
| KOG0730 | 693 | consensus | 97.73 | |
| pfam07726 | 131 | AAA_3 ATPase family associated with various cellular ac | 97.71 | |
| COG0714 | 329 | MoxR-like ATPases [General function prediction only] | 97.59 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular activ | 97.57 | |
| pfam00910 | 105 | RNA_helicase RNA helicase. This family includes RNA hel | 97.34 | |
| KOG0732 | 1080 | consensus | 97.3 | |
| KOG0742 | 630 | consensus | 97.22 | |
| ) from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins.." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=TIGR02639">TIGR02639 | 774 | ClpA ATP-dependent Clp protease ATP-binding subunit Clp | 97.16 | |
| COG0542 | 786 | clpA ATP-binding subunits of Clp protease and DnaK/DnaJ | 97.1 | |
| KOG1051 | 898 | consensus | 97.08 | |
| TIGR03346 | 852 | chaperone_ClpB ATP-dependent chaperone ClpB. Members of | 97.07 | |
| CHL00095 | 823 | clpC Clp protease ATP binding subunit | 97.0 | |
| pfam07724 | 168 | AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry inc | 96.9 | |
| pfam00931 | 285 | NB-ARC NB-ARC domain. | 96.52 | |
| pfam05673 | 248 | DUF815 Protein of unknown function (DUF815). This famil | 96.5 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter nucle | 96.36 | |
| COG2607 | 287 | Predicted ATPase (AAA+ superfamily) [General function p | 96.23 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA | 96.18 | |
| PHA02244 | 383 | ATPase-like protein | 95.89 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems involved i | 95.73 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-like (P | 95.65 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; Prov | 95.62 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter | 95.45 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the maltose | 95.35 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in cyto | 95.3 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, invol | 95.24 | |
| COG2255 | 332 | RuvB Holliday junction resolvasome, helicase subunit [D | 95.2 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the ABC | 95.18 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTERM lo | 95.04 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cyt | 95.01 | |
| COG1373 | 398 | Predicted ATPase (AAA+ superfamily) [General function p | 95.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-lik | 94.86 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleotide e | 94.84 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (PDR) f | 94.61 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain I of | 94.45 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involved in | 94.3 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 94.21 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor ( | 94.21 | |
| CHL00095 | 823 | clpC Clp protease ATP binding subunit | 93.91 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding proteins | 93.53 | |
| COG0606 | 490 | Predicted ATPase with chaperone activity [Posttranslati | 93.5 | |
| KOG2543 | 438 | consensus | 93.44 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNa | 93.33 | |
| PRK10865 | 857 | protein disaggregation chaperone; Provisional | 93.12 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette | 92.84 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding subunit | 92.64 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Reviewed | 91.68 | |
| cd01882 | 225 | BMS1 Bms1. Bms1 is an essential, evolutionarily conserv | 91.6 | |
| KOG0735 | 952 | consensus | 97.67 | |
| TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. Member | 97.1 | |
| KOG0737 | 386 | consensus | 96.87 | |
| pfam01637 | 223 | Arch_ATPase Archaeal ATPase. This family contain a cons | 96.84 | |
| KOG0729 | 435 | consensus | 96.76 | |
| pfam05496 | 234 | RuvB_N Holliday junction DNA helicase ruvB N-terminus. | 96.61 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibr | 96.51 | |
| PRK13539 | 206 | cytochrome c biogenesis protein CcmA; Provisional | 96.27 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This | 96.1 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-binding | 95.85 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin exporte | 95.8 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding component | 95.66 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Antigen P | 95.64 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 95.57 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a | 95.41 | |
| PRK11388 | 639 | DNA-binding transcriptional regulator DhaR; Provisional | 95.38 | |
| KOG0741 | 744 | consensus | 95.37 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter that i | 95.36 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is a cen | 95.29 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-binding p | 95.23 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, closely | 95.02 | |
| KOG0739 | 439 | consensus | 94.86 | |
| KOG0738 | 491 | consensus | 94.83 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily found | 94.83 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This | 94.62 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to ModC. | 94.55 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Provision | 94.46 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of the L | 94.44 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor S | 94.31 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC component | 94.13 | |
| pfam00270 | 167 | DEAD DEAD/DEAH box helicase. Members of this family inc | 94.13 | |
| pfam09848 | 348 | DUF2075 Uncharacterized conserved protein (DUF2075). Th | 93.97 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 93.43 | |
| TIGR02928 | 383 | TIGR02928 orc1/cdc6 family replication initiation prote | 93.33 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tranpor | 93.13 | |
| KOG1803 | 649 | consensus | 93.04 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domain II; | 92.98 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute Trans | 92.87 | |
| KOG0740 | 428 | consensus | 92.86 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type tr | 92.7 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the ATPa | 92.21 | |
| KOG0743 | 457 | consensus | 91.95 | |
| PRK13636 | 285 | cbiO cobalt transporter ATP-binding subunit; Provisiona | 91.93 | |
| pfam01078 | 207 | Mg_chelatase Magnesium chelatase, subunit ChlI. Magnesi | 91.91 | |
| TIGR00150 | 147 | TIGR00150 conserved hypothetical protein TIGR00150; Int | 91.84 | |
| PRK13407 | 334 | bchI magnesium chelatase subunit I; Provisional | 91.79 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family includ | 91.21 | |
| TIGR00368 | 505 | TIGR00368 Mg chelatase homolog; InterPro: IPR004482 Thi | 91.13 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway component | 90.97 | |
| TIGR02546 | 430 | III_secr_ATP type III secretion apparatus H+-transporti | 90.58 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provisiona | 90.42 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding prote | 90.41 | |
| KOG0736 | 953 | consensus | 97.55 | |
| pfam08298 | 358 | AAA_PrkA PrkA AAA domain. This is a family of PrkA bact | 93.45 | |
| KOG0734 | 752 | consensus | 97.26 | |
| TIGR01448 | 769 | recD_rel helicase, RecD/TraA family; InterPro: IPR00634 | 96.71 | |
| KOG0744 | 423 | consensus | 97.19 | |
| TIGR01243 | 980 | CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR | 95.99 | |
| PRK00080 | 328 | ruvB Holliday junction DNA helicase RuvB; Reviewed | 95.1 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Transcript | 90.89 | |
| TIGR01241 | 505 | FtsH_fam ATP-dependent metallopeptidase HflB; InterPro: | 97.19 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transport sys | 93.04 | |
| PRK06921 | 265 | hypothetical protein; Provisional | 97.1 | |
| PRK08116 | 262 | hypothetical protein; Validated | 96.86 | |
| pfam03969 | 361 | AFG1_ATPase AFG1-like ATPase. This family of proteins c | 96.55 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 95.68 | |
| PRK00149 | 447 | dnaA chromosomal replication initiation protein; Review | 95.68 | |
| PRK06835 | 330 | DNA replication protein DnaC; Validated | 95.07 | |
| PRK07952 | 242 | DNA replication protein DnaC; Validated | 94.96 | |
| PRK12422 | 455 | chromosomal replication initiation protein; Provisional | 94.94 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 94.82 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Members | 94.31 | |
| pfam00308 | 219 | Bac_DnaA Bacterial dnaA protein. | 93.62 | |
| PRK08903 | 227 | hypothetical protein; Validated | 91.36 | |
| TIGR02759 | 613 | TraD_Ftype type IV conjugative transfer system coupling | 90.49 | |
| KOG0652 | 424 | consensus | 96.72 | |
| PRK06674 | 563 | DNA polymerase III subunits gamma and tau; Validated | 94.43 | |
| PRK06647 | 560 | DNA polymerase III subunits gamma and tau; Validated | 94.26 | |
| PRK05563 | 541 | DNA polymerase III subunits gamma and tau; Validated | 92.14 | |
| PRK07003 | 816 | DNA polymerase III subunits gamma and tau; Validated | 91.69 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP-bindi | 96.37 | |
| PRK11176 | 581 | lipid transporter ATP-binding/permease protein; Provisi | 95.77 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-binding com | 95.14 | |
| PRK11160 | 575 | cysteine/glutathione ABC transporter membrane/ATP-bindi | 93.04 | |
| TIGR00635 | 305 | ruvB Holliday junction DNA helicase RuvB; InterPro: IPR | 96.09 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 96.04 | |
| smart00763 | 361 | AAA_PrkA PrkA AAA domain. This is a family of PrkA bact | 93.29 | |
| TIGR00643 | 721 | recG ATP-dependent DNA helicase RecG; InterPro: IPR0046 | 92.53 | |
| PRK10790 | 593 | putative multidrug transporter membrane\ATP-binding com | 95.98 | |
| KOG0726 | 440 | consensus | 95.6 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibr | 95.53 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 95.42 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNa | 95.22 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in drug | 95.03 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provisiona | 94.38 | |
| PRK13549 | 513 | xylose transporter ATP-binding subunit; Provisional | 94.37 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC transport | 93.79 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein ModF; | 93.36 | |
| PRK03695 | 245 | vitamin B12-transporter ATPase; Provisional | 93.27 | |
| PRK10895 | 241 | putative ABC transporter ATP-binding protein YhbG; Prov | 93.25 | |
| pfam06745 | 231 | KaiC KaiC. This family represents a conserved region wi | 92.27 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the YhbG fam | 92.15 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily represent | 91.83 | |
| PRK10876 | 1181 | recB exonuclease V subunit beta; Provisional | 91.58 | |
| PRK13657 | 585 | cyclic beta-1,2-glucan ABC transporter; Provisional | 95.28 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase component | 94.28 | |
| PRK13544 | 208 | consensus | 94.14 |
| >pfam03969 AFG1_ATPase AFG1-like ATPase | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=914.42 Aligned_cols=358 Identities=36% Similarity=0.621 Sum_probs=337.7 Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC-CCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHH Q ss_conf 58999999997488778989999999999999998613543-33225664310246666668864998888877289999 Q gi|254781047|r 5 LVSSRLISLIQDKKLKYNPAQESVVKSFDRLLVDLYKQQKQ-EQGIFSWLWNLRGIKRKYCSMQGIYLHGDVGQGKSMLM 83 (404) Q Consensus 5 ~~~~~y~~~v~~~~i~~D~~Q~~~i~~L~~L~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~kGlYL~G~VG~GKT~LM 83 (404) T Consensus 2 tP~~~Y~~~v~~g~l~~D~~Q~~a~~~L~~L~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~kGlYl~G~VGrGKTmLM 78 (361) T pfam03969 2 TPPQRYTAQLQRGAIFPDVAQANAVPALDRLYQRLQAADFVRQSGAGGKLWGR---KRSHQPVRGLYLWGGVGRGKTHLM 78 (361) T ss_pred CHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCC---CCCCCCCCEEEEECCCCCCHHHHH T ss_conf 87999999986799999989999999999999999715565555234443157---887999986898899888699999 Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHH Q ss_conf 99998578111468889999999999999971311224665578078999999613879998423204713588899999 Q gi|254781047|r 84 NLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCFDEFMITNIADAIILSRLF 163 (404) Q Consensus 84 dlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCfDEF~V~DiaDAmil~rl~ 163 (404) T Consensus 79 DlFy~~lp~~~K~R~HFh~FM~~vH~~l~~~~~--------~~dpl~~va~~l~~~~~lLCfDEFqV~DIaDAMIL~rLf 150 (361) T pfam03969 79 DSFFESLPGERKRRTHFHRFMFRVHDELTTLQG--------GDDPLPIAADRFANEARLLCFDEFEVDDIGDAMILGRLF 150 (361) T ss_pred HHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHC--------CCCCHHHHHHHHHHCCCEEEEEEEEECCHHHHHHHHHHH T ss_conf 999986775344456678999999999999766--------776389999999725877997635616788899999999 Q ss_pred HHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCCCCHHHHCCCCCCCEEEECCCHHHHHHHHHHH Q ss_conf 99985496899817868677523874056689899999850508980473112211236783022035302268999999 Q gi|254781047|r 164 AALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDSGQDYRRKEQSILPIYMTPLNSYNRVLMDKLW 243 (404) Q Consensus 164 ~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~~~DYR~~~~~~~~~y~~p~~~~~~~~l~~~f 243 (404) T Consensus 151 ~~Lf~~gvvlV~TSN~~P~~LY~~GLqR~~FlPfI~ll~~~~~v~~l~~~~DYR~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (361) T pfam03969 151 EALFARGVSLVATSNTAPEQLYRNGLNRQRFLPAIDLLESHFEVVRVDGPVDYRLRTLEQAPLWLYPLDGAAWAALDRLW 230 (361) T ss_pred HHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHHCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH T ss_conf 99997797899808999899836874177889999999986789981598780546565565400578666689999999 Q ss_pred HHHCCCCCCCCCCEEEECCEEEEECCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHH Q ss_conf 98604444677632763680899612202111101999852102468999998537889981898787246389998999 Q gi|254781047|r 244 AHITKGKKSLSLNISTEGGYEIHVPFFCSRVSRFSFFDLCDRPLSANDFVEIANRFDVVIINDIPLLKEDRKDWIKRFIM 323 (404) Q Consensus 244 ~~l~~~~~~~~~~i~v~~gR~i~v~~~~~~va~f~F~eLC~~~lg~~DYi~Ia~~f~ti~I~~VP~l~~~~~d~arRFI~ 323 (404) T Consensus 231 ~~l~~~~~~~~~~l~v-~gR~i~v~~~~~~v~~f~F~~LC~~p~~~~DYl~ia~~f~~v~i~~VP~l~~~~~d~arRFI~ 309 (361) T pfam03969 231 DALTLGEPQPLSTLEV-AARLARARAAGGDLVWFSFADLCLAPRHPSDYLALAERFSTVFLTDVPPMTRCSQDEARRFIA 309 (361) T ss_pred HHHHCCCCCCCCCEEE-CCEEEEEHHHCCCEECCCHHHHHHCCCCHHHHHHHHHHCCEEEECCCCCCCCCCCHHHHHHHH T ss_conf 9970899899751104-463775021038850012888866558889999999869999988998899987089999999 Q ss_pred HHHHHHCCCCCEEEECCCCHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHH Q ss_conf 99998228982899807897880134676531348998988745242788972 Q gi|254781047|r 324 LIDVFYEHKIGLIISSEENIEDLFPYKLRKGAFEIQRTVSRLYEMFSAQYIGK 376 (404) Q Consensus 324 LID~lYd~kv~Li~sa~~~~~~L~~~~~~~~~F~f~Rt~SRL~EMqS~~yl~~ 376 (404) T Consensus 310 LID~lYd~~~kL~~sa~~~~~~L--y~g~~~~f~f~Rt~SRL~EM~s~~yl~r 360 (361) T pfam03969 310 LVDELYDRHVKLVASAEAALDDL--YRGGRLAFEFQRTLSRLLEMQSEDYLAR 360 (361) T ss_pred HHHHHHCCCCCEEEECCCCHHHH--CCCCCCHHHHHHHHHHHHHHCCHHHHHC T ss_conf 99998407997899878999996--4898420110498799999687877626 |
This family of proteins contains a P-loop motif and are predicted to be ATPases. |
| >COG1485 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=870.90 Aligned_cols=361 Identities=38% Similarity=0.702 Sum_probs=343.0 Q ss_pred CCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHH Q ss_conf 70058999999997488778989999999999999998613543332256643102466666688649988888772899 Q gi|254781047|r 2 SLDLVSSRLISLIQDKKLKYNPAQESVVKSFDRLLVDLYKQQKQEQGIFSWLWNLRGIKRKYCSMQGIYLHGDVGQGKSM 81 (404) Q Consensus 2 ~~~~~~~~y~~~v~~~~i~~D~~Q~~~i~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kGlYL~G~VG~GKT~ 81 (404) T Consensus 7 ~~~sp~~~y~~~~~~~~~~~D~aQ~~a~~~Ldrl~~~~~~~~~~~~-~l~~lf~r-----~~~~~~GlYl~GgVGrGKT~ 80 (367) T COG1485 7 PTMSPVERYAQLVPAGTFQPDPAQPAAAAALDRLYDELVAPRSARK-ALGWLFGR-----DHGPVRGLYLWGGVGRGKTM 80 (367) T ss_pred CCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCC-----CCCCCCEEEEECCCCCCHHH T ss_conf 8779899999750567788886789999999999998626444555-21110036-----88888358888997864999 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHH Q ss_conf 99999985781114688899999999999999713112246655780789999996138799984232047135888999 Q gi|254781047|r 82 LMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCFDEFMITNIADAIILSR 161 (404) Q Consensus 82 LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCfDEF~V~DiaDAmil~r 161 (404) T Consensus 81 LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g--------~~dpl~~iA~~~~~~~~vLCfDEF~VtDI~DAMiL~r 152 (367) T COG1485 81 LMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQG--------QTDPLPPIADELAAETRVLCFDEFEVTDIADAMILGR 152 (367) T ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCC--------CCCCCHHHHHHHHHCCCEEEEEEEEECCHHHHHHHHH T ss_conf 99999865876456655077999999999999718--------8886579999998417889863036237578899999 Q ss_pred HHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCCCCHHHHCCCCCCCEEEECCCHHHHHHHHH Q ss_conf 99999854968998178686775238740566898999998505089804731122112367830220353022689999 Q gi|254781047|r 162 LFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDSGQDYRRKEQSILPIYMTPLNSYNRVLMDK 241 (404) Q Consensus 162 l~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~~~DYR~~~~~~~~~y~~p~~~~~~~~l~~ 241 (404) T Consensus 153 L~~~Lf~~GV~lvaTSN~~P~~LY~dGlqR~~FLP~I~li~~~~~v~~vD~~~DYR~r~l~~a~~y~~Pl~~~~~~~l~~ 232 (367) T COG1485 153 LLEALFARGVVLVATSNTAPDNLYKDGLQRERFLPAIDLIKSHFEVVNVDGPVDYRLRKLEQAPVYLTPLDAEAEAALDK 232 (367) T ss_pred HHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCCCEEECCCCHHHHHHHHH T ss_conf 99999977968999589996785446025776377999998754799705876623566666744554786788999999 Q ss_pred HHHHHCCCCCCCCCCEEEECCEEEEECCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHH Q ss_conf 99986044446776327636808996122021111019998521024689999985378899818987872463899989 Q gi|254781047|r 242 LWAHITKGKKSLSLNISTEGGYEIHVPFFCSRVSRFSFFDLCDRPLSANDFVEIANRFDVVIINDIPLLKEDRKDWIKRF 321 (404) Q Consensus 242 ~f~~l~~~~~~~~~~i~v~~gR~i~v~~~~~~va~f~F~eLC~~~lg~~DYi~Ia~~f~ti~I~~VP~l~~~~~d~arRF 321 (404) T Consensus 233 ~~~~ls~~~~~~~~~l~i-~gR~i~~~~~~~~~~~f~f~~Lc~~p~s~~DYl~l~~~f~tv~l~~vp~m~~~~~~~arRF 311 (367) T COG1485 233 LWAALSDGAPEAAANLEI-KGREIRVPAVAGGLLWFDFAQLCEAPRSASDYLALAERFHTVFLTDVPQMDPLDRDEARRF 311 (367) T ss_pred HHHHHCCCCCCCCCHHHC-CCCEEECCCCCCCCHHCCHHHHHHCCCCHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHH T ss_conf 998733587667740112-5831002355686012239988528577888999986234899868877880226899999 Q ss_pred HHHHHHHHCCCCCEEEECCCCHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHCCC Q ss_conf 9999998228982899807897880134676531348998988745242788972444 Q gi|254781047|r 322 IMLIDVFYEHKIGLIISSEENIEDLFPYKLRKGAFEIQRTVSRLYEMFSAQYIGKNKI 379 (404) Q Consensus 322 I~LID~lYd~kv~Li~sa~~~~~~L~~~~~~~~~F~f~Rt~SRL~EMqS~~yl~~~~~ 379 (404) T Consensus 312 I~lVD~lYD~~vkL~~Sae~~~~~L--y~~~~~afeF~Rt~SRL~EMqS~~yl~~~~~ 367 (367) T COG1485 312 IALVDELYDRGVKLVASAEVPLNEL--YQGGRLAFEFQRTLSRLQEMQSEEYLGIPHR 367 (367) T ss_pred HHHHHHHHHCCCCEEEECCCCHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 9999999864884799756789995--2572144588999999999888886415579 |
|
| >KOG2383 consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=823.19 Aligned_cols=377 Identities=36% Similarity=0.622 Sum_probs=326.6 Q ss_pred CCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH-CCCCC------CCHHHHHHHCCC------CC-----CCC Q ss_conf 7005899999999748877898999999999999999861-35433------322566431024------66-----666 Q gi|254781047|r 2 SLDLVSSRLISLIQDKKLKYNPAQESVVKSFDRLLVDLYK-QQKQE------QGIFSWLWNLRG------IK-----RKY 63 (404) Q Consensus 2 ~~~~~~~~y~~~v~~~~i~~D~~Q~~~i~~L~~L~~~l~~-~~~~~------~~~~~~~~~~~~------~~-----~~~ 63 (404) T Consensus 32 ~~~tpl~~y~k~V~~g~l~~d~yq~~~~~~~~~L~~~~~e~y~p~~~~~~~~~e~~r~i~~l~k~~~~~k~~~~~a~~~~ 111 (467) T KOG2383 32 FLLTPLKEYSKLVNTGTLKSDPYQRKTVSAFERLYHELIEYYDPRLKQWSAKREEGRWIFELKKSFDDGKLDTPNASGQP 111 (467) T ss_pred CCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC T ss_conf 13686667776742475347811210189999997646663695211565312356688999988751576786545788 Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-----CCCCHHHHHHHHHH Q ss_conf 6886499888887728999999998578-11146888999999999999997131122466-----55780789999996 Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFALVP-IEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEI-----LESDPIPLVASSIA 137 (404) Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~-~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~-----~~~dpl~~va~~l~ 137 (404) T Consensus 112 ~~PkGlYlYG~VGcGKTmLMDlFy~~~~~i~rkqRvHFh~fM~~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~vA~eIa 191 (467) T KOG2383 112 GPPKGLYLYGSVGCGKTMLMDLFYDALPPIWRKQRVHFHGFMLSVHKRMHELKQEQGAEKPGYAKSWEIDPLPVVADEIA 191 (467) T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH T ss_conf 99846899635675446778877632784013444039999999999999999841654655333466786178999985 Q ss_pred CCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCCCCHHH Q ss_conf 13879998423204713588899999999854968998178686775238740566898999998505089804731122 Q gi|254781047|r 138 LESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDSGQDYR 217 (404) Q Consensus 138 ~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~~~DYR 217 (404) T Consensus 192 ~ea~lLCFDEfQVTDVADAmiL~rLf~~Lf~~GvVlvATSNR~P~dLYknGlQR~~F~PfI~~L~~rc~vi~ldS~vDYR 271 (467) T KOG2383 192 EEAILLCFDEFQVTDVADAMILKRLFEHLFKNGVVLVATSNRAPEDLYKNGLQRENFIPFIALLEERCKVIQLDSGVDYR 271 (467) T ss_pred HHCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHCCHHHHHHHHHHHHHHHHHEEEECCCCCCHH T ss_conf 50303431201013688999999999999738759998278985888624302553006899998763688658853353 Q ss_pred HCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCC-CCCCEEEECCEEEEECCCCCCCCCCCHHHHHHHHCCHHHHHHHH Q ss_conf 11236783022035302268999999986044446-77632763680899612202111101999852102468999998 Q gi|254781047|r 218 RKEQSILPIYMTPLNSYNRVLMDKLWAHITKGKKS-LSLNISTEGGYEIHVPFFCSRVSRFSFFDLCDRPLSANDFVEIA 296 (404) Q Consensus 218 ~~~~~~~~~y~~p~~~~~~~~l~~~f~~l~~~~~~-~~~~i~v~~gR~i~v~~~~~~va~f~F~eLC~~~lg~~DYi~Ia 296 (404) T Consensus 272 ~~~~~~~~~~yf~~~~d~~~~l~~~fk~~~~dq~d~~~~~~l~v~GR~l~vpk~cg~VA~ftFeeLC~rPlgAaDYL~la 351 (467) T KOG2383 272 RKAKSAGENYYFISETDVETVLKEWFKLLAADQNDGTRQRTLVVFGRKLIVPKACGGVADFTFEELCGRPLGAADYLGLA 351 (467) T ss_pred HCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCEEEECCCCCCCCCCCHHHHCCCCCCHHHHHHHH T ss_conf 30577775367248002789999999997435888777742267522677025578703122998708954247799997 Q ss_pred HHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHCCC--------------------------- Q ss_conf 53788998189878724638999899999998228982899807897880134--------------------------- Q gi|254781047|r 297 NRFDVVIINDIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIISSEENIEDLFPY--------------------------- 349 (404) Q Consensus 297 ~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~kv~Li~sa~~~~~~L~~~--------------------------- 349 (404) T Consensus 352 k~fhti~v~dIP~lsl~~r~~~rRFITliD~lYd~~~rlv~sa~~p~~~Lf~~~~~~e~ls~s~r~~mddl~iks~~~~~ 431 (467) T KOG2383 352 KNFHTIIVRDIPQLSLENRDQARRFITLIDALYDNHVRLVCSAATPLEELFQFTGHSEALSDSPRTLMDDLGIKSDSAGG 431 (467) T ss_pred HHCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCC T ss_conf 64245776065111057788776787898888635723896478878987445675321255753110011334567665 Q ss_pred ----CCCCCCHHHHHHHHHHHHHCCHHHHHHCC Q ss_conf ----67653134899898874524278897244 Q gi|254781047|r 350 ----KLRKGAFEIQRTVSRLYEMFSAQYIGKNK 378 (404) Q Consensus 350 ----~~~~~~F~f~Rt~SRL~EMqS~~yl~~~~ 378 (404) T Consensus 432 ~~mf~g~EE~FAf~RtlSRL~eMqt~~y~~~~~ 464 (467) T KOG2383 432 SPMFSGEEEGFAFDRTLSRLYEMQTELYWEQPY 464 (467) T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC T ss_conf 542256188888888988999850210033566 |
|
| >PRK08939 primosomal protein DnaI; Reviewed | Back alignment and domain information |
|---|
Probab=99.52 E-value=2e-12 Score=98.95 Aligned_cols=139 Identities=19% Similarity=0.294 Sum_probs=103.5 Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHH--HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC Q ss_conf 68864998888877289999999985781114--6888999999999999997131122466557807899999961387 Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKK--CRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESR 141 (404) Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K--~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~ 141 (404) T Consensus 155 ~~~kGlyl~G~~G~GKTyL~~aian~La~~g~~v~~v~~p~~~~~lK~s~~-------------d~s~~~~i-~~~k~~~ 220 (306) T PRK08939 155 EKVKGLYLYGDFGVGKTYLLAAIANELAKKGVSSTLVHFPEFIRELKNAIS-------------DGSVKEKI-DAVKEAP 220 (306) T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHC-------------CCCHHHHH-HHHHCCC T ss_conf 888778898999998999999999999986992999875999999999864-------------89889999-9984499 Q ss_pred EEEEEEEEECCCHHHH---HHHHHHHHHHHCCCEEEEECCCCHHHHH------CCCCCHHHHHHHHHHHHHCCEEEECCC Q ss_conf 9998423204713588---8999999998549689981786867752------387405668989999985050898047 Q gi|254781047|r 142 VLCFDEFMITNIADAI---ILSRLFAALFSHGCIIVMTSNFIPENLY------KDEINRNVLVSFIELLEKKLEIISLDS 212 (404) Q Consensus 142 lLCfDEF~V~DiaDAm---il~rl~~~lf~~gv~lV~TSN~~P~dLY------~~GLqR~~FlPfI~~lk~~~~V~~l~~ 212 (404) T Consensus 221 vLiLDDiGaE~~t~W~rd~vl~~IL~~Rm~~~lPTffTSN~~~~eLe~~l~~~~~~~e~~ka~RimeRI~~l~~~v~l~G 300 (306) T PRK08939 221 VLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELEHHLAYTQRGDETVKAARIMERIRYLAKEVHLEG 300 (306) T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCEEEEECC T ss_conf 89984446542677789989999999999749997997799999999998632699537999999999998573587147 Q ss_pred CCHHH Q ss_conf 31122 Q gi|254781047|r 213 GQDYR 217 (404) Q Consensus 213 ~~DYR 217 (404) T Consensus 301 -~nrR 304 (306) T PRK08939 301 -KNRR 304 (306) T ss_pred -CCCC T ss_conf -7778 |
|
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.7e-12 Score=98.09 Aligned_cols=139 Identities=15% Similarity=0.182 Sum_probs=97.0 Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCHH--HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCE Q ss_conf 8864998888877289999999985781114--68889999999999999971311224665578078999999613879 Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKK--CRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRV 142 (404) Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K--~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~l 142 (404) T Consensus 107 ~~~GLll~G~~GtGKThLa~aIa~~l~~~g~~V~~~~~~~ll~~lk~~~~~~~----------~~~~~e~l~~-l~~~dL 175 (262) T PRK08116 107 ESVGLLLWGSPGNGKTYLAAAIANELIEKGVPVVFVNVPELLNRIKSTYNSEG----------KEDENEIIRA-LDNADL 175 (262) T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHCCC----------CHHHHHHHHH-HHCCCE T ss_conf 68618998989998999999999999987993999889999999999986356----------1019999998-612998 Q ss_pred EEEEEEEECCCHHHH--HHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCCCCHHHHCC Q ss_conf 998423204713588--899999999854968998178686775238740566898999998505089804731122112 Q gi|254781047|r 143 LCFDEFMITNIADAI--ILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDSGQDYRRKE 220 (404) Q Consensus 143 LCfDEF~V~DiaDAm--il~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~~~DYR~~~ 220 (404) T Consensus 176 LIiDDlG~e~~t~w~~e~lf~IIn~Ry~~~kptIiTTNl~~~eL~~~-~----~~Ri~sRl~e~~~~v~~~-G~d~R~~~ 249 (262) T PRK08116 176 LILDDLGAEKDTEWVREKLYNIIDSRYRKGLPTIFTTNLSLEELKNQ-Y----GKRTYSRILEMCTPVKNE-GKSYRREI 249 (262) T ss_pred EEEEHHCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHH-H----HHHHHHHHHHCCEEEEEE-CCCHHHHH T ss_conf 99832214569878999999999999976999899879999999998-6----379999998677899851-77887999 |
|
| >COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.1e-09 Score=78.72 Aligned_cols=142 Identities=13% Similarity=0.135 Sum_probs=97.7 Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHH---HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC Q ss_conf 886499888887728999999998578111468---88999999999999997131122466557807899999961387 Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCR---LHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESR 141 (404) Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R---~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~ 141 (404) T Consensus 104 ~~~nl~l~G~~G~GKthLa~Ai~~~l~-~~g~sv~f~~~~el~~~Lk~~~~~-------------~~~~~~l~~~l~~~d 169 (254) T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAGISVLFITAPDLLSKLKAAFDE-------------GRLEEKLLRELKKVD 169 (254) T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHH-HCCCEEEEEEHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHCC T ss_conf 588289989999879999999999999-839849998859999999998745-------------526899998875289 Q ss_pred EEEEEEEEE--CCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCCCCHHHHC Q ss_conf 999842320--471358889999999985496899817868677523874056689899999850508980473112211 Q gi|254781047|r 142 VLCFDEFMI--TNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDSGQDYRRK 219 (404) Q Consensus 142 lLCfDEF~V--~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~~~DYR~~ 219 (404) T Consensus 170 lLIiDDlG~~~~~~~~~~~~~q~I~~r~~~~~~-~~tsN~~~~~~~~~~~~~~~~e~~~dRi~~~~~~~~~~-g~s~rl~ 247 (254) T COG1484 170 LLIIDDIGYEPFSQEEADLLFQLISRRYESRSL-IITSNLSFGEWDELFGDDALTEALLDRILHHSHVIVIK-GESYRLN 247 (254) T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCC-CEEECCCHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEC-CHHHHHH T ss_conf 899823677668815587999999999973054-20205882788866067511689999998616103761-5167653 Q ss_pred CCC Q ss_conf 236 Q gi|254781047|r 220 EQS 222 (404) Q Consensus 220 ~~~ 222 (404) T Consensus 248 ~~~ 250 (254) T COG1484 248 VRR 250 (254) T ss_pred CCC T ss_conf 022 |
|
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.6e-08 Score=74.14 Aligned_cols=143 Identities=18% Similarity=0.187 Sum_probs=96.9 Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEE Q ss_conf 88649988888772899999999857811146888999999999999997131122466557807899999961387999 Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLC 144 (404) Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLC 144 (404) T Consensus 97 ~~~Nvil~G~~GtGKThLA~Alg~~A-~~~G~~v~f~~~~~-L~~~L~~a~~---------~g~~~~~~~~l-~~~dLLI 164 (254) T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRA-CQAGHRVLFATAAQ-WVARLAAAHH---------AGRLQDELVKL-GRIPLLI 164 (254) T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHH-HHCCCCEEEEEHHH-HHHHHHHHHH---------CCCHHHHHHHH-HCCCEEE T ss_conf 58878998999986899999999999-98699679987799-9999999885---------58099999985-1368776 Q ss_pred EEEEEEC--CCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCH-HHHHHHHHHHHHCCEEEECCCCCHHHHCCC Q ss_conf 8423204--7135888999999998549689981786867752387405-668989999985050898047311221123 Q gi|254781047|r 145 FDEFMIT--NIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINR-NVLVSFIELLEKKLEIISLDSGQDYRRKEQ 221 (404) Q Consensus 145 fDEF~V~--DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR-~~FlPfI~~lk~~~~V~~l~~~~DYR~~~~ 221 (404) T Consensus 165 iDe~g~~~~~~~~a~~lf~li~~Rye~~-S~IiTSn~~~~~W~~~-f~D~~la~AilDRL~H~a~~i~~~G-~SyR~k~r 241 (254) T PRK06526 165 VDEVGYIPFEAEAANLFFQLVSSRYERA-SLIVTSNKPFGRWGEV-FGDDVVAAAMIDRLVHHAEVISLKG-DSYRLKDR 241 (254) T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHCCC-CEEEECCCCHHHHHHH-CCCHHHHHHHHHHHCCCEEEEEECC-CCCCCCCC T ss_conf 5021364478899999999999997458-8676658986688886-4868999999998625628998438-86653557 Q ss_pred C Q ss_conf 6 Q gi|254781047|r 222 S 222 (404) Q Consensus 222 ~ 222 (404) T Consensus 242 ~ 242 (254) T PRK06526 242 D 242 (254) T ss_pred C T ss_conf 6 |
|
| >PRK09183 transposase/IS protein; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.8e-09 Score=78.14 Aligned_cols=148 Identities=16% Similarity=0.224 Sum_probs=100.8 Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEE Q ss_conf 88649988888772899999999857811146888999999999999997131122466557807899999961387999 Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLC 144 (404) Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLC 144 (404) T Consensus 100 ~~~Nvil~G~~GtGKThLA~Alg~~A~-~~G~~v~f~~~-~~L~~~L~~a~~---------~~~~~~~l~r~l~~~dLLI 168 (258) T PRK09183 100 RNENIVLLGPSGVGKTHLAIALGYEAV-RAGIKVRFTTA-ADLLLQLSTAQR---------QGRYKTTLQRGVMAPRLLI 168 (258) T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHH-HCCCEEEEEEH-HHHHHHHHHHHH---------CCCHHHHHHHHHCCCCEEE T ss_conf 588679989999868999999999999-87993999789-999999999987---------6859999998743465144 Q ss_pred EEEE--EECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHH-HHHHHHHHHHHCCEEEECCCCCHHHHCCC Q ss_conf 8423--20471358889999999985496899817868677523874056-68989999985050898047311221123 Q gi|254781047|r 145 FDEF--MITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRN-VLVSFIELLEKKLEIISLDSGQDYRRKEQ 221 (404) Q Consensus 145 fDEF--~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~-~FlPfI~~lk~~~~V~~l~~~~DYR~~~~ 221 (404) T Consensus 169 iDdlG~~~~~~~~~~~lfeli~~Rye~~-S~IiTSn~~~~~W~~~f~~D~~la~AilDRL~H~a~~i~l~-GeSyR~k~~ 246 (258) T PRK09183 169 IDEIGYLPFSQEEANLFFQVIAKRYEKG-AMILTSNLPFGQWDQTFAGDAALTSAMLDRLLHHSHVVQIK-GESYRLKQK 246 (258) T ss_pred EHHHHCCCCCHHHHHHHHHHHHHHHCCC-CEEEECCCCHHHHHHHCCCCHHHHHHHHHHHCCCEEEEEEC-CCCCCHHHH T ss_conf 3133154688889999999999985767-78998899978985651686999999999860461799745-877237658 Q ss_pred CCCC Q ss_conf 6783 Q gi|254781047|r 222 SILP 225 (404) Q Consensus 222 ~~~~ 225 (404) T Consensus 247 ~k~~ 250 (258) T PRK09183 247 RKAG 250 (258) T ss_pred HHCC T ss_conf 7557 |
|
| >COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.5e-09 Score=79.25 Aligned_cols=126 Identities=20% Similarity=0.274 Sum_probs=82.3 Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC----CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC Q ss_conf 86499888887728999999998578----11146888999999999999997131122466557807899999961387 Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVP----IEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESR 141 (404) Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~----~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~ 141 (404) T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~---a~~~----------~~~~~Fk~~y--~~d 177 (408) T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVK---ALRD----------NEMEKFKEKY--SLD 177 (408) T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHH---HHHH----------HHHHHHHHHH--CCC T ss_conf 895799879999789999999999986299864885048998999999---9885----------0488888764--267 Q ss_pred EEEEEEEEEC--CCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCC-H--HHHHHHHHHHHHCCEEEECCCCCHH Q ss_conf 9998423204--713588899999999854968998178686775238740-5--6689899999850508980473112 Q gi|254781047|r 142 VLCFDEFMIT--NIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEIN-R--NVLVSFIELLEKKLEIISLDSGQDY 216 (404) Q Consensus 142 lLCfDEF~V~--DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLq-R--~~FlPfI~~lk~~~~V~~l~~~~DY 216 (404) T Consensus 178 lllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l--~~~~~rL~SR~--------~~Gl~~~I~~Pd~e 247 (408) T COG0593 178 LLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKEL--NGLEDRLRSRL--------EWGLVVEIEPPDDE 247 (408) T ss_pred EEEECHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHH--CCCCHHHHHHH--------HCEEEEEECCCCHH T ss_conf 355513867567715799999999988850887999707883221--10358899898--------63057752798889 |
|
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
Probab=98.96 E-value=9.3e-09 Score=75.65 Aligned_cols=142 Identities=18% Similarity=0.237 Sum_probs=96.8 Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEE Q ss_conf 88649988888772899999999857811146888999999999999997131122466557807899999961387999 Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLC 144 (404) Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLC 144 (404) T Consensus 105 ~~~Nvil~Gp~GtGKThLA~Alg~~A~-~~G~~V~f~~~~~-L~~~L~~a~~---------~~~~~~~~~~l-~~~dLLI 172 (269) T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALI-ENGWRVLFTRTTD-LVQKLQVARR---------ELQLESAIAKL-DKFDLLI 172 (269) T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH-HCCCEEEEEEHHH-HHHHHHHHHH---------CCCHHHHHHHH-HCCCEEE T ss_conf 487089989999878899999999999-8799399978999-9999999775---------58399999997-4446012 Q ss_pred EEEEEECCC--HHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCCCCHHHHCC Q ss_conf 842320471--3588899999999854968998178686775238740566898999998505089804731122112 Q gi|254781047|r 145 FDEFMITNI--ADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDSGQDYRRKE 220 (404) Q Consensus 145 fDEF~V~Di--aDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~~~DYR~~~ 220 (404) T Consensus 173 iDe~G~~~~~~~~~~~lf~lI~~Rye~~-S~IITSn~~~~~W~~~f~D~~la~AiLDRLvH~a~~i~l~G-eSyR~k~ 248 (269) T PRK08181 173 LDDLAYVTKDQAETSVLFELISARYERR-SILITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIFEMNV-ESYRRRT 248 (269) T ss_pred EHHCCCCCCCHHHHHHHHHHHHHHHCCC-CEEEECCCCHHHHHHHCCCHHHHHHHHHHHHCCEEEEEECC-CCCCCHH T ss_conf 2010566799899999999999985788-88998899977887753868899999998701528997558-7612056 |
|
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.6e-08 Score=70.68 Aligned_cols=136 Identities=15% Similarity=0.180 Sum_probs=90.5 Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCHH--HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCE Q ss_conf 8864998888877289999999985781114--68889999999999999971311224665578078999999613879 Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKK--CRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRV 142 (404) Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K--~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~l 142 (404) T Consensus 95 ~~~gLlF~G~~GTGKThLA~aIan~Li~~G~sVlf~t~~dLl~~lr~t~----~~~~-------~~e~~~-l~~l~~~dL 162 (242) T PRK07952 95 NIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTF----RNSE-------TSEEQL-LNDLSNVDL 162 (242) T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHH----HCCC-------CCHHHH-HHHHHCCCE T ss_conf 8871799789999789999999999998799499977999999999998----0687-------569999-998631898 Q ss_pred EEEEEEEECCCHHH--HHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHH--HHHHHH-HHCCEEEECCCCCHHH Q ss_conf 99842320471358--889999999985496899817868677523874056689--899999-8505089804731122 Q gi|254781047|r 143 LCFDEFMITNIADA--IILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLV--SFIELL-EKKLEIISLDSGQDYR 217 (404) Q Consensus 143 LCfDEF~V~DiaDA--mil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~Fl--PfI~~l-k~~~~V~~l~~~~DYR 217 (404) T Consensus 163 LIiDdlG~e~~t~~~~~~lf~iId~Ry~~~kp~IitTNl~~~eL~~-------~lGeR~~dRl~~~~~~~l~f~-w~SyR 234 (242) T PRK07952 163 LVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTK-------LLGERVMDRMRLGNSLWVIFN-WDSYR 234 (242) T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHH-------HHHHHHHHHHHHCCCEEEEEC-CCCCC T ss_conf 9873014665888899999999999997169889981799999999-------970899999972798599606-70501 Q ss_pred HCC Q ss_conf 112 Q gi|254781047|r 218 RKE 220 (404) Q Consensus 218 ~~~ 220 (404) T Consensus 235 ~~i 237 (242) T PRK07952 235 SRV 237 (242) T ss_pred CCC T ss_conf 234 |
|
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=98.87 E-value=3e-08 Score=72.41 Aligned_cols=136 Identities=16% Similarity=0.248 Sum_probs=87.7 Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHH---HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCC Q ss_conf 688649988888772899999999857811146888---99999999999999713112246655780789999996138 Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLH---FYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALES 140 (404) Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~H---Fh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~ 140 (404) T Consensus 181 ~~~~nLlf~G~~G~GKTfLa~~IA~ell~~g~-sViy~ta~~L~~~----l~~~~~~~~------~-~~~~~-~~~l~~~ 247 (330) T PRK06835 181 KNNENLLFYGNTGTGKTFLSNCIAKELLDRGK-TVIYRTSDELIEN----LREIRFNND------N-DAPEL-EDLLINC 247 (330) T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHHHCCC-EEEEEEHHHHHHH----HHHHHCCCC------C-CHHHH-HHHHHHC T ss_conf 88886698899999889999999999998799-4999629999999----999754576------4-48999-9999618 Q ss_pred CEEEEEEEEECCCHHHHHHHH---HHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHH-HHHHHHHHCCEEEECCCCCHH Q ss_conf 799984232047135888999---9999985496899817868677523874056689-899999850508980473112 Q gi|254781047|r 141 RVLCFDEFMITNIADAIILSR---LFAALFSHGCIIVMTSNFIPENLYKDEINRNVLV-SFIELLEKKLEIISLDSGQDY 216 (404) Q Consensus 141 ~lLCfDEF~V~DiaDAmil~r---l~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~Fl-PfI~~lk~~~~V~~l~~~~DY 216 (404) T Consensus 248 DLLIIDDLG~E~~t~-~~~~~Lf~iIN~R~~~~k~tIITTNl~~~eL~~------~y~eRi~SRi~~~~~~~~~~G-~Di 319 (330) T PRK06835 248 DLLIIDDLGTESITE-FSKTELFNLINKRLLMNKKMIISTNLSLEELLK------TYSERIASRLLGNFTLLKFYG-EDI 319 (330) T ss_pred CEEEEECCCCCCCCH-HHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHH------HHHHHHHHHHHHCCEEEEEEC-CCH T ss_conf 989972103455886-899999999999986799979988999899999------874899999981854998526-558 Q ss_pred HHCC Q ss_conf 2112 Q gi|254781047|r 217 RRKE 220 (404) Q Consensus 217 R~~~ 220 (404) T Consensus 320 R~~k 323 (330) T PRK06835 320 RIKK 323 (330) T ss_pred HHHH T ss_conf 9999 |
|
| >pfam01695 IstB IstB-like ATP binding protein | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.8e-08 Score=69.78 Aligned_cols=126 Identities=13% Similarity=0.147 Sum_probs=78.9 Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHH---HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCE Q ss_conf 864998888877289999999985781114688---89999999999999971311224665578078999999613879 Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRL---HFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRV 142 (404) Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~---HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~l 142 (404) T Consensus 47 ~~Nlll~G~~GtGKThLA~Ai~~~~~-~~g~~v~f~~~~~L~~~l~~----~~~---------~~~~~~~l~~-~~~~dl 111 (178) T pfam01695 47 AENLLLLGPPGVGKTHLACALGHQAC-RAGYSVLFTRTPDLVEQLKR----ARG---------DGRLARTLQR-LAKADL 111 (178) T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHH-HCCCEEEEEECHHHHHHHHH----HHH---------CCCHHHHHHH-HHCCCE T ss_conf 87689989999878999999999999-86985999961679999998----752---------6749999999-625897 Q ss_pred EEEEEEEECCCH--HHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEE Q ss_conf 998423204713--58889999999985496899817868677523874056689899999850508 Q gi|254781047|r 143 LCFDEFMITNIA--DAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEI 207 (404) Q Consensus 143 LCfDEF~V~Dia--DAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V 207 (404) T Consensus 112 LIiDDlG~~~~s~~~~~~lf~li~~Rye~-~stIiTSN~~~~~W~~~~~d~~~a~AilDRlvh~~~~ 177 (178) T pfam01695 112 LILDDIGYLPLSQEAAHLLFELISDRYER-RSTILTSNLPFGEWHEVFGDPTLATAILDRLLHHAHV 177 (178) T ss_pred EEEEHHCCCCCCHHHHHHHHHHHHHHHCC-CCEEEECCCCHHHHHHHCCCHHHHHHHHHHHHHCEEE T ss_conf 88720016568989999999999999756-8868776899789987648768999999987015065 |
This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function. |
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.8e-07 Score=64.24 Aligned_cols=139 Identities=13% Similarity=0.141 Sum_probs=87.3 Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEE Q ss_conf 88649988888772899999999857811146888999999999999997131122466557807899999961387999 Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLC 144 (404) Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLC 144 (404) T Consensus 100 ~~~NlIf~G~pGtGKTHLA~AIg~~a~~~-G~sVlF~t~-~dLv~~L~~a~~~g--------~~~~k~l~~l-~~~dLLI 168 (248) T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLAK-GRSVIVVTV-PDVMSRLHESYDNG--------QSGEKFLQEL-CKVDLLV 168 (248) T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHC-CCEEEEEEH-HHHHHHHHHHHHCC--------CCHHHHHHHH-HCCCEEE T ss_conf 88608998999987889999999999987-996999889-99999999999848--------5099999997-3389898 Q ss_pred EEEEEEC--CCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHH-HCCEEEECCCCCHHHHCC Q ss_conf 8423204--713588899999999854968998178686775238740566898999998-505089804731122112 Q gi|254781047|r 145 FDEFMIT--NIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLE-KKLEIISLDSGQDYRRKE 220 (404) Q Consensus 145 fDEF~V~--DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk-~~~~V~~l~~~~DYR~~~ 220 (404) T Consensus 169 IDElG~~~~s~~~~~llfqlI~~Ry~~~ks~IiTTNL~f~ew~~--ilgd---ailDRL~~h~~~~i~f~-GeSYRk~i 241 (248) T PRK12377 169 LDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLNHEAMST--LLGE---RVMDRMTMNGGRWVNFN-WESWRPNV 241 (248) T ss_pred EHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHH--HHHH---HHHHHHHHCCCEEEEEE-CCCCCCCC T ss_conf 60005788986799999999999985579868975899779988--8759---99999986693499861-73111357 |
|
| >PRK06921 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.3e-07 Score=66.83 Aligned_cols=130 Identities=14% Similarity=0.147 Sum_probs=78.4 Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCHH---HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC Q ss_conf 8864998888877289999999985781114---6888999999999999997131122466557807899999961387 Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKK---CRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESR 141 (404) Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K---~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~ 141 (404) T Consensus 115 ~~~~l~f~G~~G~GKThLa~aIa~~Ll~~~~~~Vly~~~~~~~~~lk~~~~---------------~~~~~-l~~~~~~d 178 (265) T PRK06921 115 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDFD---------------LLEAK-LNRMKKVE 178 (265) T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHH---------------HHHHH-HHHHHCCC T ss_conf 766279972898988999999999999962971999887999999998888---------------89999-99863299 Q ss_pred EEEEEEE-----EECCCHHHH--HHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCE--EEECCC Q ss_conf 9998423-----204713588--8999999998549689981786867752387405668989999985050--898047 Q gi|254781047|r 142 VLCFDEF-----MITNIADAI--ILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLE--IISLDS 212 (404) Q Consensus 142 lLCfDEF-----~V~DiaDAm--il~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~--V~~l~~ 212 (404) T Consensus 179 lLIIDDLfk~~~G~e~~te~~~~~lf~iIN~Ry~~~kptIiSSNl~~~~L~~--i~e~i----~SRi~emc~~~~v~~~G 252 (265) T PRK06921 179 VLFIDDLFKPVNGKPRATEWQIEQTYSVVNYRYLNHKPILISSELTIDELLD--IDEAL----GSRIVEMCKDYLVIING 252 (265) T ss_pred EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHH--HHHHH----HHHHHHHCCCCEEEEEC T ss_conf 9998221223479878988999999999999997699989986899899987--63798----88899972574899967 Q ss_pred CCHHH Q ss_conf 31122 Q gi|254781047|r 213 GQDYR 217 (404) Q Consensus 213 ~~DYR 217 (404) T Consensus 253 -~~~~ 256 (265) T PRK06921 253 -DSFL 256 (265) T ss_pred -CHHH T ss_conf -4113 |
|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.3e-08 Score=71.43 Aligned_cols=123 Identities=19% Similarity=0.230 Sum_probs=69.0 Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEE Q ss_conf 86499888887728999999998578111468889999999999999971311224665578078999999613879998 Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCF 145 (404) Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCf 145 (404) T Consensus 39 ~~~l~i~G~~gsGKTHLLqa~~~~~~~~~~-~~~yi~~~~-----~~~------------~~~--~~l-~~l~~~d~l~i 97 (229) T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQR-TAIYIPLSK-----SQY------------FSP--AVL-ENLEQQDLVCL 97 (229) T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHCC-CEEEEEHHH-----HHH------------CCH--HHH-HHHHHCCEEEE T ss_conf 987999899999889999999999997189-859997377-----564------------069--999-87654797999 Q ss_pred EEEEEC--CCHHHHHHHHHHHHHHHCCCE-EEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCCCCHH Q ss_conf 423204--713588899999999854968-99817868677523874056689899999850508980473112 Q gi|254781047|r 146 DEFMIT--NIADAIILSRLFAALFSHGCI-IVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDSGQDY 216 (404) Q Consensus 146 DEF~V~--DiaDAmil~rl~~~lf~~gv~-lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~~~DY 216 (404) T Consensus 98 DDi~~i~g~~~~e~~lF~l~N~l~~~~~~~ll~ss~~~p~~l~---~~----l~DL~SRl~~~~~~~i~~~dd~ 164 (229) T PRK06893 98 DDLQAVIGNEEWELAIFDLFNRIKESGKTLLLISANQSPHALQ---IK----LPDLASRLTWGEIYQLNDLTDE 164 (229) T ss_pred ECHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHC---CH----HHHHHHHHHCCEEEEECCCCHH T ss_conf 6723424883899999999999997599179985798833221---00----2679999968836996677757 |
|
| >KOG0733 consensus | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.4e-05 Score=55.44 Aligned_cols=140 Identities=18% Similarity=0.231 Sum_probs=81.0 Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC-E Q ss_conf 688649988888772899999999857811146888999999999999997131122466557807899999961387-9 Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESR-V 142 (404) Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~-l 142 (404) T Consensus 221 ~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~-~isAp--------ei--vSGvS--GE--SEkkiRelF~~A~~~aPci 285 (802) T KOG0733 221 RPPRGVLLHGPPGCGKTSLANAIAGELGVPFL-SISAP--------EI--VSGVS--GE--SEKKIRELFDQAKSNAPCI 285 (802) T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHCCCCEE-EECCH--------HH--HCCCC--CC--CHHHHHHHHHHHHCCCCEE T ss_conf 79975164489986478999997521288548-51414--------65--31557--52--2899999999873669759 Q ss_pred EEEEEEEECCCH--------HHHHHHHHHHHHH--------HCCCEEEEECCCCHHHHHCCCCCH-HHHHHHH------- Q ss_conf 998423204713--------5888999999998--------549689981786867752387405-6689899------- Q gi|254781047|r 143 LCFDEFMITNIA--------DAIILSRLFAALF--------SHGCIIVMTSNFIPENLYKDEINR-NVLVSFI------- 198 (404) Q Consensus 143 LCfDEF~V~Dia--------DAmil~rl~~~lf--------~~gv~lV~TSN~~P~dLY~~GLqR-~~FlPfI------- 198 (404) T Consensus 286 vFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRP-Dsl-DpaLRRaGRFdrEI~l~vP~e 363 (802) T KOG0733 286 VFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRP-DSL-DPALRRAGRFDREICLGVPSE 363 (802) T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCC-CCC-CHHHHCCCCCCCEEEECCCCH T ss_conf 985110013644045788999999999998510025666689976998247897-655-877732565532353068966 Q ss_pred ----HHHHHCCEEEECCCCCHHHHCC Q ss_conf ----9998505089804731122112 Q gi|254781047|r 199 ----ELLEKKLEIISLDSGQDYRRKE 220 (404) Q Consensus 199 ----~~lk~~~~V~~l~~~~DYR~~~ 220 (404) T Consensus 364 ~aR~~IL~~~~~~lrl~g~~d~~qlA 389 (802) T KOG0733 364 TAREEILRIICRGLRLSGDFDFKQLA 389 (802) T ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHH T ss_conf 88999999998627778776899997 |
|
| >CHL00176 ftsH cell division protein; Validated | Back alignment and domain information |
|---|
Probab=98.14 E-value=6.2e-05 Score=51.39 Aligned_cols=141 Identities=18% Similarity=0.224 Sum_probs=77.3 Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEE Q ss_conf 68864998888877289999999985781114688899999999999999713112246655780789999996138799 Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVL 143 (404) Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lL 143 (404) T Consensus 208 k~PkGvLL~GpPGTGKTlLAkAvAgEa~vpF-~~~sgs~F~e-----~~vGvg-----a~rVR~-LF~~Ar~~a--P~Ii 273 (631) T CHL00176 208 KIPKGVLLVGPPGTGKTLLAKAIAGEAEVPF-FSISGSEFVE-----MFVGVG-----AARVRD-LFKKAKENS--PCIV 273 (631) T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCE-EEEEHHHHHH-----HHCCHH-----HHHHHH-HHHHHHHCC--CEEE T ss_conf 6896589889899878899999856558846-9988378556-----421555-----899999-999998639--9699 Q ss_pred EEEEEEECC------CH-----HHHHHHHHHHHHH----HCCCEEEEECCCC----HHHHHCCCCCHHHHH--HH----H Q ss_conf 984232047------13-----5888999999998----5496899817868----677523874056689--89----9 Q gi|254781047|r 144 CFDEFMITN------IA-----DAIILSRLFAALF----SHGCIIVMTSNFI----PENLYKDEINRNVLV--SF----I 198 (404) Q Consensus 144 CfDEF~V~D------ia-----DAmil~rl~~~lf----~~gv~lV~TSN~~----P~dLY~~GLqR~~Fl--Pf----I 198 (404) T Consensus 274 FIDEiDaig~~Rg~~~~gg~~e~e~tlnqLL~emDGf~~~~gViViaATNrpd~LDpALlRPGRFDR~I~V~lPD~~gR~ 353 (631) T CHL00176 274 FIDEIDAVGRQRGAGVGGGNDEREQTLNQLLTEMDGFEGNKGVIVIAATNRIDILDAALLRPGRFDRQVTVSLPDFEGRL 353 (631) T ss_pred EEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCEEEEECCCCHHHHH T ss_conf 98710120114789888985089999999999842888788869998258855456866268877549982698989999 Q ss_pred HHHHHCCEEEECCCCCHHHH Q ss_conf 99985050898047311221 Q gi|254781047|r 199 ELLEKKLEIISLDSGQDYRR 218 (404) Q Consensus 199 ~~lk~~~~V~~l~~~~DYR~ 218 (404) T Consensus 354 ~IL~vh~k~~~l~~dvdl~~ 373 (631) T CHL00176 354 DILKVHARNKKLAEDVSLEL 373 (631) T ss_pred HHHHHHHHCCCCCCCHHHHH T ss_conf 99999970786665300999 |
|
| >KOG0727 consensus | Back alignment and domain information |
|---|
Probab=98.07 E-value=4.8e-05 Score=52.11 Aligned_cols=112 Identities=21% Similarity=0.265 Sum_probs=62.1 Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCC--CC Q ss_conf 6886499888887728999999998578111468889999999999999971311224665578078999999613--87 Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALE--SR 141 (404) Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~--~~ 141 (404) T Consensus 187 dpprgvllygppg~gktml~kava~~t~a~-firvvgsefv---qkylge-----------gprmvrd-vfrlakenaps 250 (408) T KOG0727 187 DPPRGVLLYGPPGTGKTMLAKAVANHTTAA-FIRVVGSEFV---QKYLGE-----------GPRMVRD-VFRLAKENAPS 250 (408) T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHCCCHH-EEEECCHHHH---HHHHCC-----------CCHHHHH-HHHHHHCCCCC T ss_conf 998622775799975789999986126111-4463018999---998554-----------8389999-99987616983 Q ss_pred EEEEEEEEE--------CCCHHHHHHHHHHHHHHH--------CCCEEEEECCCC----HHHHHCCCCCHH Q ss_conf 999842320--------471358889999999985--------496899817868----677523874056 Q gi|254781047|r 142 VLCFDEFMI--------TNIADAIILSRLFAALFS--------HGCIIVMTSNFI----PENLYKDEINRN 192 (404) Q Consensus 142 lLCfDEF~V--------~DiaDAmil~rl~~~lf~--------~gv~lV~TSN~~----P~dLY~~GLqR~ 192 (404) T Consensus 251 iifideidaiatkrfdaqtgadre-vqril~ellnqmdgfdq~~nvkvimatnradtldpallrpgrldrk 320 (408) T KOG0727 251 IIFIDEIDAIATKRFDAQTGADRE-VQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRK 320 (408) T ss_pred EEEEEHHHHHHHHHCCCCCCCCHH-HHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCC T ss_conf 798622456766412444463189-9999999997514767666558998327555668766287643444 |
|
| >COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00016 Score=48.76 Aligned_cols=140 Identities=19% Similarity=0.193 Sum_probs=82.7 Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCC--CC Q ss_conf 6886499888887728999999998578111468889999999999999971311224665578078999999613--87 Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALE--SR 141 (404) Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~--~~ 141 (404) T Consensus 183 ~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtF-IrvvgSEl---Vq----KYiGEG---a-----RlVRelF~lArekaPs 246 (406) T COG1222 183 DPPKGVLLYGPPGTGKTLLAKAVANQTDATF-IRVVGSEL---VQ----KYIGEG---A-----RLVRELFELAREKAPS 246 (406) T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHCCCCEE-EEECCHHH---HH----HHHCCC---H-----HHHHHHHHHHHHCCCE T ss_conf 9997127668999758899999872058669-99421999---99----983411---6-----9999999987414984 Q ss_pred EEEEEEEEE--------CCCHHHHHHHHHHHHHHH-------CCCEEEEECCCC----HHHHHCCCCCHHH------HHH Q ss_conf 999842320--------471358889999999985-------496899817868----6775238740566------898 Q gi|254781047|r 142 VLCFDEFMI--------TNIADAIILSRLFAALFS-------HGCIIVMTSNFI----PENLYKDEINRNV------LVS 196 (404) Q Consensus 142 lLCfDEF~V--------~DiaDAmil~rl~~~lf~-------~gv~lV~TSN~~----P~dLY~~GLqR~~------FlP 196 (404) T Consensus 247 IIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~g 326 (406) T COG1222 247 IIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEG 326 (406) T ss_pred EEEEECHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEECCCCCHHH T ss_conf 99983112231111368888509999999999986058897887689985588555576650887545301168989789 Q ss_pred HHHHHHHCCEEEECCCCCHHHHC Q ss_conf 99999850508980473112211 Q gi|254781047|r 197 FIELLEKKLEIISLDSGQDYRRK 219 (404) Q Consensus 197 fI~~lk~~~~V~~l~~~~DYR~~ 219 (404) T Consensus 327 R~~Il~IHtrkM~l~~dvd~e~l 349 (406) T COG1222 327 RAEILKIHTRKMNLADDVDLELL 349 (406) T ss_pred HHHHHHHHHHHCCCCCCCCHHHH T ss_conf 99999987621467667699999 |
|
| >PRK04195 replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00013 Score=49.36 Aligned_cols=115 Identities=18% Similarity=0.152 Sum_probs=66.9 Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH-------C Q ss_conf 864998888877289999999985781114688899999999999999713112246655780789999996-------1 Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIA-------L 138 (404) Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~-------~ 138 (404) T Consensus 40 ~k~lLL~GPpGvGKTT~a~~lAk~~g~~------vi--------ElNAS-------D~R~~~~I~~~i~~~~~~~sl~~~ 98 (403) T PRK04195 40 KKALLLYGPPGVGKTSLAHALANDYGWE------VI--------ELNAS-------DQRTKDVIERVAGEASTSGSLFGA 98 (403) T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCC------EE--------EECCC-------CCCCHHHHHHHHHHHHHCCCCCCC T ss_conf 7469988939987999999999984998------59--------97710-------114789999999987606887788 Q ss_pred CCCEEEEEEEEE-CCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCCCC Q ss_conf 387999842320-4713588899999999854968998178686775238740566898999998505089804731 Q gi|254781047|r 139 ESRVLCFDEFMI-TNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDSGQ 214 (404) Q Consensus 139 ~~~lLCfDEF~V-~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~~~ 214 (404) T Consensus 99 ~~KlIIlDEvD~l~~~~d~gg~~al~~~ik~s~~PiIli~Nd~----~~~---------~~~~lrs~c~~i~F~~~~ 162 (403) T PRK04195 99 KRKLILLDEVDGIHGNADRGGVRAILEIIKKAKNPIILTANDP----YDP---------SLRPLRNACLMIEFKRLS 162 (403) T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCC----CCC---------CHHHHHHHHHHCCCCCCC T ss_conf 7349996343445724447999999999854887089982684----556---------717799766122179949 |
|
| >KOG0730 consensus | Back alignment and domain information |
|---|
Probab=97.88 E-value=7.3e-05 Score=50.93 Aligned_cols=139 Identities=18% Similarity=0.238 Sum_probs=76.5 Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCC-C Q ss_conf 666886499888887728999999998578111468889999999999999971311224665578078999999613-8 Q gi|254781047|r 62 KYCSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALE-S 140 (404) Q Consensus 62 ~~~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~-~ 140 (404) T Consensus 214 g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~------a~~--~~i~~peli~k~~gE------te~~LR~~f~~a~k~~~p 279 (693) T KOG0730 214 GIKPPRGLLLYGPPGTGKTFLVRAVANEYG------AFL--FLINGPELISKFPGE------TESNLRKAFAEALKFQVP 279 (693) T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHC------CEE--EECCCHHHHHHCCCC------HHHHHHHHHHHHHCCCCC T ss_conf 899998744438999981899999999737------225--740628999852463------177899999998665998 Q ss_pred CEEEEEEEEECC-------CHHHHHHHHHHHHHHHC----CCEEEEECCCCHHHHHCCCCCHHHH-----H--HH----H Q ss_conf 799984232047-------13588899999999854----9689981786867752387405668-----9--89----9 Q gi|254781047|r 141 RVLCFDEFMITN-------IADAIILSRLFAALFSH----GCIIVMTSNFIPENLYKDEINRNVL-----V--SF----I 198 (404) Q Consensus 141 ~lLCfDEF~V~D-------iaDAmil~rl~~~lf~~----gv~lV~TSN~~P~dLY~~GLqR~~F-----l--Pf----I 198 (404) T Consensus 280 sii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~-sl-d~alRRgRfd~ev~IgiP~~~~Rl 357 (693) T KOG0730 280 SIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPD-SL-DPALRRGRFDREVEIGIPGSDGRL 357 (693) T ss_pred EEEEHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC-CC-CHHHHCCCCCCEEEECCCCCHHHH T ss_conf 0775876762377643332488899999999985276767469997158855-56-856524788531574489833588 Q ss_pred HHHHHCCEEEECCCCCHH Q ss_conf 999850508980473112 Q gi|254781047|r 199 ELLEKKLEIISLDSGQDY 216 (404) Q Consensus 199 ~~lk~~~~V~~l~~~~DY 216 (404) T Consensus 358 dIl~~l~k~~~~~~~~~l 375 (693) T KOG0730 358 DILRVLTKKMNLLSDVDL 375 (693) T ss_pred HHHHHHHHHCCCCCHHHH T ss_conf 999999861688725568 |
|
| >PRK10733 hflB ATP-dependent metalloprotease; Reviewed | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00013 Score=49.30 Aligned_cols=141 Identities=17% Similarity=0.257 Sum_probs=76.6 Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEE Q ss_conf 68864998888877289999999985781114688899999999999999713112246655780789999996138799 Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVL 143 (404) Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lL 143 (404) T Consensus 183 k~PkGvLL~GPPGtGKTlLAkAvAgEa~vpF~-~~sgsef~e-----~--~vG---vga~rVR~-lF~~Ar~~--aP~II 248 (644) T PRK10733 183 KIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFF-TISGSDFVE-----M--FVG---VGASRVRD-MFEQAKKA--APCII 248 (644) T ss_pred CCCCCEEEECCCCCCHHHHHHHHHCCCCCEEE-EEEHHHHHH-----E--EEE---CCHHHHHH-HHHHHHHC--CCEEE T ss_conf 79985177798998778999998645598089-978477302-----2--253---06899999-99999966--99799 Q ss_pred EEEEEEECC------CH-----HHHHHHHHHHHHH----HCCCEEEEECCCC----HHHHHCCCCCHHHHH--H----HH Q ss_conf 984232047------13-----5888999999998----5496899817868----677523874056689--8----99 Q gi|254781047|r 144 CFDEFMITN------IA-----DAIILSRLFAALF----SHGCIIVMTSNFI----PENLYKDEINRNVLV--S----FI 198 (404) Q Consensus 144 CfDEF~V~D------ia-----DAmil~rl~~~lf----~~gv~lV~TSN~~----P~dLY~~GLqR~~Fl--P----fI 198 (404) T Consensus 249 FIDEiDaig~~R~~~~~gg~~e~~~tlNqlL~EmDGf~~~~~ViviaATNrpd~LD~ALlRPGRFDr~I~V~lPd~~~R~ 328 (644) T PRK10733 249 FIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGRE 328 (644) T ss_pred EEECHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHCCCCCCEEEEECCCCHHHHH T ss_conf 99532203666789888983288878999999954888878769996269975547777168886559997798988999 Q ss_pred HHHHHCCEEEECCCCCHHHH Q ss_conf 99985050898047311221 Q gi|254781047|r 199 ELLEKKLEIISLDSGQDYRR 218 (404) Q Consensus 199 ~~lk~~~~V~~l~~~~DYR~ 218 (404) T Consensus 329 ~ILkvh~~~~~l~~dvdl~~ 348 (644) T PRK10733 329 QILKVHMRRVPLAPDIDAAI 348 (644) T ss_pred HHHHHHHCCCCCCCCCCHHH T ss_conf 99999964887773115898 |
|
| >PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0019 Score=42.00 Aligned_cols=126 Identities=16% Similarity=0.315 Sum_probs=67.2 Q ss_pred CEEEEECCCCCCHHHHHHHHHHHC-----CCC-HHHHHHHHHHHHHHHHHHHH--HHCCCCCCCCCCCCHHHHHHHHHHC Q ss_conf 649988888772899999999857-----811-14688899999999999999--7131122466557807899999961 Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALV-----PIE-KKCRLHFYEFMKDVHSRIIM--YRKKIEFGEILESDPIPLVASSIAL 138 (404) Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l-----~~~-~K~R~HFh~FM~~ih~~l~~--~~~~~~~~~~~~~dpl~~va~~l~~ 138 (404) T Consensus 208 NNpiLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i----~~Ldl~~LiAGtkyRGe-------fEeRlk~vi~e~~~ 276 (758) T PRK11034 208 NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTI----YSLDIGSLLAGTKYRGD-------FEKRFKALLKQLEQ 276 (758) T ss_pred CCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEE----EEEEHHHHHCCCCCCHH-------HHHHHHHHHHHHHH T ss_conf 89602169998699999999999973899765589889----98458778616864154-------99999999999985 Q ss_pred CC-CEEEEEEEEEC-CC----HHHHHHHHHHHHHHHCC-CEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECC Q ss_conf 38-79998423204-71----35888999999998549-68998178686775238740566898999998505089804 Q gi|254781047|r 139 ES-RVLCFDEFMIT-NI----ADAIILSRLFAALFSHG-CIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLD 211 (404) Q Consensus 139 ~~-~lLCfDEF~V~-Di----aDAmil~rl~~~lf~~g-v~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~ 211 (404) T Consensus 277 ~~~~ILFIDEiH~ivGaG~~~gg~~DaaNlLKP~LarG~l~~IgaT-T~-~E-Yrk~iekD~------AL~RRFq~V~V~ 347 (758) T PRK11034 277 DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGST-TY-QE-FSNIFEKDR------ALARRFQKIDIT 347 (758) T ss_pred CCCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEC-CH-HH-HHHCCCCCH------HHHHCCCEEECC T ss_conf 7985999804344226887677764678874578746972399943-77-99-875032147------888428265318 Q ss_pred C Q ss_conf 7 Q gi|254781047|r 212 S 212 (404) Q Consensus 212 ~ 212 (404) T Consensus 348 E 348 (758) T PRK11034 348 E 348 (758) T ss_pred C T ss_conf 9 |
|
| >KOG0733 consensus | Back alignment and domain information |
|---|
Probab=97.63 E-value=4.4e-05 Score=52.34 Aligned_cols=139 Identities=19% Similarity=0.252 Sum_probs=76.9 Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH-HHHHCCCCE Q ss_conf 6886499888887728999999998578111468889999999999999971311224665578078999-999613879 Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVA-SSIALESRV 142 (404) Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va-~~l~~~~~l 142 (404) T Consensus 543 ~~PsGvLL~GPPGCGKTLlAKAVANEag------~NFisV--KGPELlNkYVGES-------ErAVR~vFqRAR~saPCV 607 (802) T KOG0733 543 DAPSGVLLCGPPGCGKTLLAKAVANEAG------ANFISV--KGPELLNKYVGES-------ERAVRQVFQRARASAPCV 607 (802) T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHCC------CCEEEE--CCHHHHHHHHHHH-------HHHHHHHHHHHHCCCCEE T ss_conf 8987238757998618899999850304------754762--3889998774237-------899999999862389838 Q ss_pred EEEEEEEE--C------CCHHHHHHHHHHHHHH----HCCCEEEEECCCC----HHHHHCCCCCHHHHHHH------HHH Q ss_conf 99842320--4------7135888999999998----5496899817868----67752387405668989------999 Q gi|254781047|r 143 LCFDEFMI--T------NIADAIILSRLFAALF----SHGCIIVMTSNFI----PENLYKDEINRNVLVSF------IEL 200 (404) Q Consensus 143 LCfDEF~V--~------DiaDAmil~rl~~~lf----~~gv~lV~TSN~~----P~dLY~~GLqR~~FlPf------I~~ 200 (404) T Consensus 608 IFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~I 687 (802) T KOG0733 608 IFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAI 687 (802) T ss_pred EEECCHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEEECCCCHHHHHHH T ss_conf 98511120276557777505899999999873162111425999506897655565518775574245069987889999 Q ss_pred HHHCCE--EEECCCCCHHH Q ss_conf 985050--89804731122 Q gi|254781047|r 201 LEKKLE--IISLDSGQDYR 217 (404) Q Consensus 201 lk~~~~--V~~l~~~~DYR 217 (404) T Consensus 688 LK~~tkn~k~pl~~dVdl~ 706 (802) T KOG0733 688 LKTITKNTKPPLSSDVDLD 706 (802) T ss_pred HHHHHCCCCCCCCCCCCHH T ss_conf 9998535799887545899 |
|
| >KOG0651 consensus | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00089 Score=44.04 Aligned_cols=124 Identities=20% Similarity=0.267 Sum_probs=71.5 Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCH-H--------HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH Q ss_conf 66886499888887728999999998578111-4--------68889999999999999971311224665578078999 Q gi|254781047|r 63 YCSMQGIYLHGDVGQGKSMLMNLFFALVPIEK-K--------CRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVA 133 (404) Q Consensus 63 ~~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~-K--------~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va 133 (404) T Consensus 163 Ik~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsa--RlIRemf~y-------------------A 221 (388) T KOG0651 163 IKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESA--RLIRDMFRY-------------------A 221 (388) T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHHCCCHH--HHHHHHHHH-------------------H T ss_conf 7788256876799986459999999865985477447666330026578--899999977-------------------8 Q ss_pred HHHHCCCCEEEEEEEE--------ECCCHHHHHHHHHHHHHHH-------CCCEEEEECCCCHHHHHC-----CCCCHHH Q ss_conf 9996138799984232--------0471358889999999985-------496899817868677523-----8740566 Q gi|254781047|r 134 SSIALESRVLCFDEFM--------ITNIADAIILSRLFAALFS-------HGCIIVMTSNFIPENLYK-----DEINRNV 193 (404) Q Consensus 134 ~~l~~~~~lLCfDEF~--------V~DiaDAmil~rl~~~lf~-------~gv~lV~TSN~~P~dLY~-----~GLqR~~ 193 (404) T Consensus 222 ~~~~p--ciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNr-pdtLdpaLlRpGRldrk~ 298 (388) T KOG0651 222 REVIP--CIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNR-PDTLDPALLRPGRLDRKV 298 (388) T ss_pred HHHCC--EEEEEHHHHHHCCEEECCCCCHHHHHHHHHHHHHHHHCCCHHCCCCCEEEECCC-CCCCCHHHCCCCCCCCEE T ss_conf 65275--577510123114577335552059999999999874214012066317985388-665665542875211100 Q ss_pred HHHHHHHHHHCCEEEECC Q ss_conf 898999998505089804 Q gi|254781047|r 194 LVSFIELLEKKLEIISLD 211 (404) Q Consensus 194 FlPfI~~lk~~~~V~~l~ 211 (404) T Consensus 299 ~iP-lpne~~r~~I~Kih 315 (388) T KOG0651 299 EIP-LPNEQARLGILKIH 315 (388) T ss_pred CCC-CCCHHHCEEEEEEC T ss_conf 268-85544240267623 |
|
| >TIGR01242 26Sp45 26S proteasome subunit P45 family; InterPro: IPR005937 Intracellular proteins, including short-lived proteins such as cyclin, Mos, Myc, p53, NF-kappaB, and IkappaB, are degraded by the ubiquitin-proteasome system | Back alignment and domain information |
|---|
Probab=97.53 E-value=5.4e-05 Score=51.77 Aligned_cols=138 Identities=20% Similarity=0.250 Sum_probs=74.3 Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH-HHHCCCCCCCCCCCCHHHHHHHHHHCCC-- Q ss_conf 6886499888887728999999998578111468889999999999999-9713112246655780789999996138-- Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRII-MYRKKIEFGEILESDPIPLVASSIALES-- 140 (404) Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~-~~~~~~~~~~~~~~dpl~~va~~l~~~~-- 140 (404) T Consensus 154 ~PPKGvLLyGPPGtGKTLlAKAvA~et~ATF-Irv--------VgSElV~KyIGE---GA-----rLV~~~F~LAkEKaP 216 (364) T TIGR01242 154 EPPKGVLLYGPPGTGKTLLAKAVAHETNATF-IRV--------VGSELVRKYIGE---GA-----RLVREVFELAKEKAP 216 (364) T ss_pred CCCCCEEEECCCCCCHHHHHHHHHCCCCCEE-EEE--------EHHHHHHHHHCC---HH-----HHHHHHHHHHHCCCC T ss_conf 9898657007579768899998631455126-886--------044444444133---16-----899999998530698 Q ss_pred CEEEEEEEEE--------CCCHHHHHHHHHHHHHHH-------CCCEEEEECCCC----HHHHHCCCCCH------HHHH Q ss_conf 7999842320--------471358889999999985-------496899817868----67752387405------6689 Q gi|254781047|r 141 RVLCFDEFMI--------TNIADAIILSRLFAALFS-------HGCIIVMTSNFI----PENLYKDEINR------NVLV 195 (404) Q Consensus 141 ~lLCfDEF~V--------~DiaDAmil~rl~~~lf~-------~gv~lV~TSN~~----P~dLY~~GLqR------~~Fl 195 (404) T Consensus 217 sIiFIDEiDAiaakR~~~~TsGdREV~RTlmQLLAElDGFd~rg~VkviaATNR~DilDPA~LRPGRFDR~IEVPlP~~~ 296 (364) T TIGR01242 217 SIIFIDEIDAIAAKRVDSSTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPAILRPGRFDRIIEVPLPDFE 296 (364) T ss_pred CEEEEECHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHCCCCCCCCCCCCCEEECCCCCCC T ss_conf 16861013335432114677873157889999997524888767616887207620204321488861325731697832 Q ss_pred HHHHHHHHCCEEEECCCCCHHHH Q ss_conf 89999985050898047311221 Q gi|254781047|r 196 SFIELLEKKLEIISLDSGQDYRR 218 (404) Q Consensus 196 PfI~~lk~~~~V~~l~~~~DYR~ 218 (404) T Consensus 297 GR~eIlkiHTr~~~la~dVdl~~ 319 (364) T TIGR01242 297 GRLEILKIHTRKMKLAEDVDLEA 319 (364) T ss_pred CHHHHHHHHHCCCCCCCCCCHHH T ss_conf 20566555210000123568799 |
The 26S proteasome (a 2 MDa complex) is made up of two subcomplexes: the 20S proteasome and the regulatory complex. The former is a 700 kDa cylindrical protease complex consisting of four stacks of heptameric rings with 28 subunits (i.e., 7777) with molecular masses of about 20-35 kDa, whereas the latter is a 700-1000 kDa complex consisting of at least 18 subunits with molecular masses of 28-110 kDa, including 6 putative ATPases (Rpt1-Rpt6) and 12 non-ATPase subunits (Rpn1-12). Members of the 26S proteasome subunit P45 family: ATPase p45/Sug1/Rpt6 may be phosphorylated within the proteasome. This phosphorylation event may play a key role in ATP-dependent proteolysis because a good correlation exists between the inhibition pattern of protein kinase inhibitors against the phosphorylation of p45 and that against the ATP-dependent proteolytic activity , . More information about these protein can be found at Protein of the Month: AAA ATPases .; GO: 0016787 hydrolase activity, 0030163 protein catabolic process, 0005634 nucleus, 0005737 cytoplasm. |
| >COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0011 Score=43.39 Aligned_cols=122 Identities=25% Similarity=0.297 Sum_probs=70.2 Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCH---H----HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH Q ss_conf 886499888887728999999998578111---4----688899999999999999713112246655780789999996 Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEK---K----CRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIA 137 (404) Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~---K----~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~ 137 (404) T Consensus 150 APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihely~rA~~~a------------------- 210 (368) T COG1223 150 APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERARKAA------------------- 210 (368) T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCC------------------- T ss_conf 7541687789996487999987254578548711688888774359899999999887519------------------- Q ss_pred CCCCEEEEEEEEECCCHHHHHHHHHHHHH-------------------HHCCCEEEEECCCCHHHHHCCCCCHHHHHHHH Q ss_conf 13879998423204713588899999999-------------------85496899817868677523874056689899 Q gi|254781047|r 138 LESRVLCFDEFMITNIADAIILSRLFAAL-------------------FSHGCIIVMTSNFIPENLYKDEINRNVLVSFI 198 (404) Q Consensus 138 ~~~~lLCfDEF~V~DiaDAmil~rl~~~l-------------------f~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI 198 (404) T Consensus 211 --PcivFiDE~------DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p-~~L--D~aiRsRFEeEI 279 (368) T COG1223 211 --PCIVFIDEL------DAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRP-ELL--DPAIRSRFEEEI 279 (368) T ss_pred --CEEEEEHHH------HHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCH-HHC--CHHHHHHHHHEE T ss_conf --849984002------455530457886454999999999850174457756999505984-650--788886556506 Q ss_pred -----------HHHHHCCEEEECCCCCHH Q ss_conf -----------999850508980473112 Q gi|254781047|r 199 -----------ELLEKKLEIISLDSGQDY 216 (404) Q Consensus 199 -----------~~lk~~~~V~~l~~~~DY 216 (404) T Consensus 280 EF~LP~~eEr~~ile~y~k~~Plpv~~~~ 308 (368) T COG1223 280 EFKLPNDEERLEILEYYAKKFPLPVDADL 308 (368) T ss_pred EEECCCHHHHHHHHHHHHHHCCCCCCCCH T ss_conf 56488858999999998985897655689 |
|
| >PRK10865 protein disaggregation chaperone; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0019 Score=41.96 Aligned_cols=126 Identities=17% Similarity=0.270 Sum_probs=69.0 Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCC---CH---HHHHHHHHHHHHHHHHHHH--HHCCCCCCCCCCCCHHHHHHHHHHC Q ss_conf 64998888877289999999985781---11---4688899999999999999--7131122466557807899999961 Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPI---EK---KCRLHFYEFMKDVHSRIIM--YRKKIEFGEILESDPIPLVASSIAL 138 (404) Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~---~~---K~R~HFh~FM~~ih~~l~~--~~~~~~~~~~~~~dpl~~va~~l~~ 138 (404) T Consensus 200 NNpiLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~I----~~LDlg~L~AGakyRGe-------FEeRLk~il~ev~~ 268 (857) T PRK10865 200 NNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRV----LALDMGALVAGAKYRGE-------FEERLKGVLNDLAK 268 (857) T ss_pred CCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCE----EEEEHHHHHHCCCCCHH-------HHHHHHHHHHHHHH T ss_conf 99758789998899999999999983899978816902----47338878614765211-------79999999999984 Q ss_pred CC--CEEEEEEEEEC----CCHHHHHHHHHHHHHHHCC-CEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECC Q ss_conf 38--79998423204----7135888999999998549-68998178686775238740566898999998505089804 Q gi|254781047|r 139 ES--RVLCFDEFMIT----NIADAIILSRLFAALFSHG-CIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLD 211 (404) Q Consensus 139 ~~--~lLCfDEF~V~----DiaDAmil~rl~~~lf~~g-v~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~ 211 (404) T Consensus 269 ~~~~iILFIDEiHtlvGaG~~~G~~DaaNlLKPaLaRGelr~IGATT--~~E-Yrk~iEkD------~AL~RRFq~V~V~ 339 (857) T PRK10865 269 QEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATT--LDE-YRQYIEKD------AALERRFQKVFVA 339 (857) T ss_pred CCCCEEEEECCHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECC--HHH-HHHHCCCC------HHHHHHCCCCCCC T ss_conf 78986999734354336887777534788867887379854999458--999-99871345------8899853710068 Q ss_pred C Q ss_conf 7 Q gi|254781047|r 212 S 212 (404) Q Consensus 212 ~ 212 (404) T Consensus 340 E 340 (857) T PRK10865 340 E 340 (857) T ss_pred C T ss_conf 9 |
|
| >PRK12402 replication factor C small subunit 2; Reviewed | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0011 Score=43.40 Aligned_cols=119 Identities=15% Similarity=0.166 Sum_probs=73.1 Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCH-----------------HHH----HHHHHHHHHHHHHHHHHHCCCCCCCCCCCC Q ss_conf 99888887728999999998578111-----------------468----889999999999999971311224665578 Q gi|254781047|r 69 IYLHGDVGQGKSMLMNLFFALVPIEK-----------------KCR----LHFYEFMKDVHSRIIMYRKKIEFGEILESD 127 (404) Q Consensus 69 lYL~G~VG~GKT~LMdlFy~~l~~~~-----------------K~R----~HFh~FM~~ih~~l~~~~~~~~~~~~~~~d 127 (404) T Consensus 39 lLf~GPpG~GKTt~A~~lA~~l~~~~~~~~~~~~nasd~~~~~~~~i~~~~~~~~~~~~--------~~--~-~~~~~~d 107 (337) T PRK12402 39 LVVYGPSGSGKTAAVRALARELYGDPWENNFTYFNVSDFFDQGKKYLVEDPRFAHFYDD--------PK--R-KYKSVID 107 (337) T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCEEECCCCHHHHHCC--------HH--H-CCCCHHH T ss_conf 98889298489999999999967997567833311653113564001016642344201--------53--3-2773789 Q ss_pred HHHHHHHHHH------CCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHH Q ss_conf 0789999996------1387999842320471358889999999985496899817868677523874056689899999 Q gi|254781047|r 128 PIPLVASSIA------LESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELL 201 (404) Q Consensus 128 pl~~va~~l~------~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~l 201 (404) T Consensus 108 ~i~~ii~~~a~~~p~~~~~KiiIlDEad~lt~~Aq~aLlk~lEe~~-~~~~fIl~t~~~-~~i-------------i~tI 172 (337) T PRK12402 108 NFKHILKEYASMRPLSADYKLILFDNAEALREDAQQALRRIMERYS-ETCRFIFSTTQP-SKL-------------IPPI 172 (337) T ss_pred HHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCC-CCEEEEEECCCC-CCC-------------CHHH T ss_conf 9999999986148877880499970713179999999998874088-766998723864-447-------------5247 Q ss_pred HHCCEEEECCCC Q ss_conf 850508980473 Q gi|254781047|r 202 EKKLEIISLDSG 213 (404) Q Consensus 202 k~~~~V~~l~~~ 213 (404) T Consensus 173 ~SRC~~i~F~~~ 184 (337) T PRK12402 173 RSRCLPLFFRPV 184 (337) T ss_pred HHHCEEEECCCC T ss_conf 762445435898 |
|
| >PRK13342 recombination factor protein RarA; Reviewed | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00041 Score=46.16 Aligned_cols=108 Identities=18% Similarity=0.168 Sum_probs=59.7 Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH----HHHCCCCE Q ss_conf 64998888877289999999985781114688899999999999999713112246655780789999----99613879 Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVAS----SIALESRV 142 (404) Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~----~l~~~~~l 142 (404) T Consensus 38 ~s~Il~GPPG~GKTTlA~iiA~~~~------~~f~~l--------nA~~-------~gv~d-ir~ii~~a~~~~~~~~ti 95 (417) T PRK13342 38 SSMILWGPPGTGKTTLARIIAGATD------AEFEAL--------SAVT-------SGVKD-LREVIEEAKQSRLGRRTI 95 (417) T ss_pred CEEEEECCCCCCHHHHHHHHHHHHC------CCEEEE--------ECCC-------CCHHH-HHHHHHHHHHHHCCCCEE T ss_conf 7599889699989999999999868------988996--------1410-------38899-999999988631489659 Q ss_pred EEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHH-HHHCCCCCHHHHHHHHHHHHHCCEEEECCC Q ss_conf 9984232047135888999999998549689981786867-752387405668989999985050898047 Q gi|254781047|r 143 LCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPE-NLYKDEINRNVLVSFIELLEKKLEIISLDS 212 (404) Q Consensus 143 LCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~-dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~ 212 (404) T Consensus 96 lfiDEIHRfnK~QQD~---LLp~vE~g~iiLIgATTENP~f~i-------------n~aLlSRc~vf~l~~ 150 (417) T PRK13342 96 LFIDEIHRFNKAQQDA---LLPHVEDGTITLIGATTENPSFEV-------------NPALLSRAQVFELKP 150 (417) T ss_pred EEEECHHHCCHHHHHH---HHHHHHCCCEEEEEECCCCCHHHC-------------CHHHHHHHHHEECCC T ss_conf 9997820058899999---987511265699974157922534-------------898985657002058 |
|
| >PRK00440 rfc replication factor C small subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.001 Score=43.66 Aligned_cols=115 Identities=16% Similarity=0.173 Sum_probs=68.3 Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC----HHHHHHHHHH---CCCC Q ss_conf 99888887728999999998578111468889999999999999971311224665578----0789999996---1387 Q gi|254781047|r 69 IYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESD----PIPLVASSIA---LESR 141 (404) Q Consensus 69 lYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~d----pl~~va~~l~---~~~~ 141 (404) T Consensus 40 lLf~GppG~GKTt~a~~la~~l~~~~-~~~~~l--------elnas-----d-~-r~id~vr~~i~~~~~~~~~~~~~~k 103 (318) T PRK00440 40 LLFAGPPGTGKTTAALALARELYGEY-WRENFL--------ELNAS-----D-E-RGIDVIRNKIKEFARTAPVGGAPFK 103 (318) T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCC-CCCCEE--------EECCC-----C-C-CCHHHHHHHHHHHHHHCCCCCCCEE T ss_conf 98889599889999999999976986-434768--------95164-----5-6-6717899999999972677899738 Q ss_pred EEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCCCC Q ss_conf 9998423204713588899999999854968998178686775238740566898999998505089804731 Q gi|254781047|r 142 VLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDSGQ 214 (404) Q Consensus 142 lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~~~ 214 (404) T Consensus 104 iiiiDE~d~l~~~aq~aL~~~mE~~-~~~~~fil~~n~~-~ki-------------i~~i~SRc~~i~f~~~~ 161 (318) T PRK00440 104 IIFLDEADNLTSDAQQALRRTMEMY-SQTTRFILSCNYS-SKI-------------IDPIQSRCAVFRFSPLP 161 (318) T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC-CCCCEEEEECCCC-CCC-------------CCCHHHHHEEEECCCCC T ss_conf 9998685532255678887643105-6662588634883-337-------------61556551011157899 |
|
| >PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0031 Score=40.61 Aligned_cols=110 Identities=18% Similarity=0.163 Sum_probs=59.7 Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH---H-H--HCC Q ss_conf 864998888877289999999985781114688899999999999999713112246655780789999---9-9--613 Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVAS---S-I--ALE 139 (404) Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~---~-l--~~~ 139 (404) T Consensus 52 ~~S~Il~GPPGtGKTTLA~iIA~~t~------~~F~~l--------sAv-------~sgvkd-lr~ii~~A~~~~~~~g~ 109 (726) T PRK13341 52 VGSLILYGPPGVGKTTLARIIANHTR------AHFSSL--------NAV-------LAGVKD-LRAEVDAAKERLERHGK 109 (726) T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHC------CCEEEE--------ECC-------CCCHHH-HHHHHHHHHHHHHHCCC T ss_conf 98278889799999999999988748------867998--------562-------037799-99999999999874599 Q ss_pred CCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCC Q ss_conf 8799984232047135888999999998549689981786867752387405668989999985050898047 Q gi|254781047|r 140 SRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDS 212 (404) Q Consensus 140 ~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~ 212 (404) T Consensus 110 ~tILFIDEIHRfNK~QQD---~LLp~vE~G~i~LIGATTENP~F----~v--------n~ALlSR~~vf~L~~ 167 (726) T PRK13341 110 RTILFIDEVHRFNKAQQD---ALLPWVENGTVTLIGATTENPYF----EV--------NKALVSRSRLFRLKS 167 (726) T ss_pred CEEEEEECHHHCCHHHHH---HHHHHHCCCEEEEEEECCCCCCE----EE--------CHHHHHHCEEEEECC T ss_conf 659998625425887899---87888606838999704789743----64--------298883234667438 |
|
| >pfam00158 Sigma54_activat Sigma-54 interaction domain | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.015 Score=36.24 Aligned_cols=118 Identities=16% Similarity=0.178 Sum_probs=63.0 Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHHH--HHHHHHH-HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEE Q ss_conf 49988888772899999999857811146--8889999-99999999997131122466557807899999961387999 Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPIEKKC--RLHFYEF-MKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLC 144 (404) Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~~~K~--R~HFh~F-M~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLC 144 (404) T Consensus 24 pVLI~GE~GtGK~~lAr~IH~~S~r~~~pfi~vnc~~~~~~~le~~LFG~~~g~f~ga~~~~~G~l----e~A-~gGTL~ 98 (168) T pfam00158 24 TVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEELLESELFGHEKGAFTGAVSDRKGLF----ELA-DGGTLF 98 (168) T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCE----EEC-CCCEEE T ss_conf 889989998888999999998524356883125678998779999875876676689875789964----226-998788 Q ss_pred EEEEEECCCHHHHHHHHHHHHHH-------------HCCCEEEEECCCCHHHHHCCCCCHHH Q ss_conf 84232047135888999999998-------------54968998178686775238740566 Q gi|254781047|r 145 FDEFMITNIADAIILSRLFAALF-------------SHGCIIVMTSNFIPENLYKDEINRNV 193 (404) Q Consensus 145 fDEF~V~DiaDAmil~rl~~~lf-------------~~gv~lV~TSN~~P~dLY~~GLqR~~ 193 (404) T Consensus 99 LdeI~~L~~~~Q---~~Ll~~L~~~~~~~~g~~~~~~~~vRiIast~~~L~~~v~~G~Fr~D 157 (168) T pfam00158 99 LDEIGELPLELQ---AKLLRVLQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFRED 157 (168) T ss_pred CCCHHHCCHHHH---HHHHHHHHCCEEEECCCCCEEEEEEEEEEECCCCHHHHHHCCCCHHH T ss_conf 024413999999---99999985796997799845888549999659889999883996399 |
|
| >COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0025 Score=41.19 Aligned_cols=131 Identities=11% Similarity=0.076 Sum_probs=79.8 Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCHHH--HH-----HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHC- Q ss_conf 649988888772899999999857811146--88-----8999999999999997131122466557807899999961- Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPIEKKC--RL-----HFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIAL- 138 (404) Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~--R~-----HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~- 138 (404) T Consensus 25 halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~ 104 (325) T COG0470 25 HALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFLSES 104 (325) T ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCC T ss_conf 61003799999789999999999658664334552002244432025688659977321333300699999999860446 Q ss_pred ----CCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCC Q ss_conf ----38799984232047135888999999998549689981786867752387405668989999985050898047 Q gi|254781047|r 139 ----ESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDS 212 (404) Q Consensus 139 ----~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~ 212 (404) T Consensus 105 ~~~~~~kviiidead~mt~~A~nallk~lEep-~~~~~~il~~n-~~~~i-------------l~tI~SRc~~i~f~~ 167 (325) T COG0470 105 PLEGGYKVVIIDEADKLTEDAANALLKTLEEP-PKNTRFILITN-DPSKI-------------LPTIRSRCQRIRFKP 167 (325) T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHCCCC-CCCEEEEEEEC-CHHHC-------------HHHHHHHEEEEECCC T ss_conf 56677269997320326988887675433248-88716999749-85556-------------478775607887677 |
|
| >PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.016 Score=36.00 Aligned_cols=139 Identities=21% Similarity=0.374 Sum_probs=82.2 Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCH-HHHH---HHH------HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH Q ss_conf 886499888887728999999998578111-4688---899------999999999999713112246655780789999 Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEK-KCRL---HFY------EFMKDVHSRIIMYRKKIEFGEILESDPIPLVAS 134 (404) Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~-K~R~---HFh------~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~ 134 (404) T Consensus 193 tKknvIL~G~pGtGKT~lAk~lA~~l~g~~~~~rv~~VqfhpsysYEDfi~G-------yrp~~-~gf~~~~G~f~~~~~ 264 (459) T PRK11331 193 IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQG-------YRPNG-VGFRRKDGIFYNFCQ 264 (459) T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHCC-------CCCCC-CCCEECCCHHHHHHH T ss_conf 5882796589998878999999999707887784689983588661787646-------05688-861326836999999 Q ss_pred HHHCC---CCEEEEEEEEECCCHHHHHHHHHHHHHHH--CC---CEEEEECC------CCHHHHHCCCC-C-HHHHHHHH Q ss_conf 99613---87999842320471358889999999985--49---68998178------68677523874-0-56689899 Q gi|254781047|r 135 SIALE---SRVLCFDEFMITNIADAIILSRLFAALFS--HG---CIIVMTSN------FIPENLYKDEI-N-RNVLVSFI 198 (404) Q Consensus 135 ~l~~~---~~lLCfDEF~V~DiaDAmil~rl~~~lf~--~g---v~lV~TSN------~~P~dLY~~GL-q-R~~FlPfI 198 (404) T Consensus 265 ~A~~~p~~~y~~iideinr~~~~--~~fgel~~liE~dkR~~~~~~~l~ys~~~~~~f~vP~Nl~iigtmNtadrs~~~~ 342 (459) T PRK11331 265 QAKEQPEKKYVFIIDEINRANLS--KVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVV 342 (459) T ss_pred HHHHCCCCCEEEEEEHHHCCCHH--HHHHHHHHHHHHCCCCCCCEEEEECCCCCCCEECCCCCEEEEEECCCCCHHHHHH T ss_conf 99849898769998432033889--9999999996412567652256300368885334688659998503341068878 Q ss_pred H-HHHHCCEEEECCCC Q ss_conf 9-99850508980473 Q gi|254781047|r 199 E-LLEKKLEIISLDSG 213 (404) Q Consensus 199 ~-~lk~~~~V~~l~~~ 213 (404) T Consensus 343 d~alrRrf~f~~~~pd 358 (459) T PRK11331 343 DYALRRRFSFIDIEPG 358 (459) T ss_pred HHHHHHHHCCEECCCC T ss_conf 9999865021215898 |
|
| >COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.0055 Score=39.03 Aligned_cols=134 Identities=19% Similarity=0.297 Sum_probs=81.0 Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC-- Q ss_conf 688649988888772899999999857811146888999999999999997131122466557807899999961387-- Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESR-- 141 (404) Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~-- 141 (404) T Consensus 181 kiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf-~iSGS~F-----VemfVGvGA-----sR--------VRdLF~qAkk~ 241 (596) T COG0465 181 KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFF-SISGSDF-----VEMFVGVGA-----SR--------VRDLFEQAKKN 241 (596) T ss_pred CCCCCEEEECCCCCCCHHHHHHHHCCCCCCCE-ECCCHHH-----HHHHCCCCC-----HH--------HHHHHHHHHCC T ss_conf 34565268559998727899998454689835-3034446-----443147883-----88--------89999985515 Q ss_pred ---EEEEEEEEECCCHHHH-------------HHHHHHHHH--HH--CCCEEEEECCCC----HHHHHCCCCCHHHHHH- Q ss_conf ---9998423204713588-------------899999999--85--496899817868----6775238740566898- Q gi|254781047|r 142 ---VLCFDEFMITNIADAI-------------ILSRLFAAL--FS--HGCIIVMTSNFI----PENLYKDEINRNVLVS- 196 (404) Q Consensus 142 ---lLCfDEF~V~DiaDAm-------------il~rl~~~l--f~--~gv~lV~TSN~~----P~dLY~~GLqR~~FlP- 196 (404) T Consensus 242 aP~IIFIDEiD--AvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~ 319 (596) T COG0465 242 APCIIFIDEID--AVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVEL 319 (596) T ss_pred CCCEEEEEHHH--HCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHCCCCCCCEEEECCC T ss_conf 99669876343--3145457788998069999998888520157888754885267874333176528877662554478 Q ss_pred -HHH----HHHHCCEEEECCCCCHHHH Q ss_conf -999----9985050898047311221 Q gi|254781047|r 197 -FIE----LLEKKLEIISLDSGQDYRR 218 (404) Q Consensus 197 -fI~----~lk~~~~V~~l~~~~DYR~ 218 (404) T Consensus 320 PDi~gRe~IlkvH~~~~~l~~~V~l~~ 346 (596) T COG0465 320 PDIKGREQILKVHAKNKPLAEDVDLKK 346 (596) T ss_pred CCHHHHHHHHHHHHHCCCCCCCCCHHH T ss_conf 515657888788641577776678889 |
|
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA; InterPro: IPR001957 The bacterial dnaA protein , , plays an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.02 Score=35.45 Aligned_cols=135 Identities=19% Similarity=0.157 Sum_probs=84.0 Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCC----HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCC Q ss_conf 88649988888772899999999857811----14688899999999999999713112246655780789999996138 Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIE----KKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALES 140 (404) Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~----~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~ 140 (404) T Consensus 180 ~~~p~~~~gg~glg~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~-~~~~~~~~ 245 (493) T TIGR00362 180 AYNPLFLYGGTGLGKTHLLHAIGNGVLELHPNAKVLYVTSENFLNDFVKALRDNK-------------LDD-FKKKYRSL 245 (493) T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHH-------------HHH-HHHHHHHC T ss_conf 6562477447542156787776434443067732788501467899998752001-------------688-88876311 Q ss_pred CEEEEEEEEECC--CHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHH----------CCCCC----HHHHHHHHHHHHHC Q ss_conf 799984232047--135888999999998549689981786867752----------38740----56689899999850 Q gi|254781047|r 141 RVLCFDEFMITN--IADAIILSRLFAALFSHGCIIVMTSNFIPENLY----------KDEIN----RNVLVSFIELLEKK 204 (404) Q Consensus 141 ~lLCfDEF~V~D--iaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY----------~~GLq----R~~FlPfI~~lk~~ 204 (404) T Consensus 246 d~~l~dd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~p~~~~~~~~~l~~~~~~g~~~~~~~p~~~~~~~~~~~~ 325 (493) T TIGR00362 246 DFLLIDDIQFLAGKEKTQEEFFHTFNALHEDGKQIVLTSDRSPKEIPGLEDRLKSRFGWGLTADIEPPDLETRLAILKKK 325 (493) T ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHCHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHH T ss_conf 12311104764135203688888888774068527885166620100046777654301410002465235789998865 Q ss_pred CEEEECCCC Q ss_conf 508980473 Q gi|254781047|r 205 LEIISLDSG 213 (404) Q Consensus 205 ~~V~~l~~~ 213 (404) T Consensus 326 ~~~~~~~~p 334 (493) T TIGR00362 326 AEEDGINLP 334 (493) T ss_pred HHHCCCCCH T ss_conf 443035652 |
DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) .; GO: 0003677 DNA binding, 0003688 DNA replication origin binding, 0005524 ATP binding, 0006270 DNA replication initiation, 0006275 regulation of DNA replication. |
| >TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.005 Score=39.27 Aligned_cols=138 Identities=17% Similarity=0.272 Sum_probs=80.1 Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCC Q ss_conf 6688649988888772899999999857811---1468889999999999999971311224665578078999999613 Q gi|254781047|r 63 YCSMQGIYLHGDVGQGKSMLMNLFFALVPIE---KKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALE 139 (404) Q Consensus 63 ~~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~---~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~ 139 (404) T Consensus 572 ~~PP~Gvll~GPPGtGktllakava~es~anfi~v~GPe~lskWvGese~~------------------ir~if~~arq~ 633 (980) T TIGR01243 572 IRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKA------------------IREIFRKARQA 633 (980) T ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEECCCHHHHHHHCHHHHH------------------HHHHHHHHHHC T ss_conf 889973487468986168888877401456467740731223440324799------------------99999986412 Q ss_pred -CCEEEEEEEEEC-----------CCHHHHHHHHHHHHHH----HCCCEEEEECCCC----HHHHHCCCCCHHHHHHH-- Q ss_conf -879998423204-----------7135888999999998----5496899817868----67752387405668989-- Q gi|254781047|r 140 -SRVLCFDEFMIT-----------NIADAIILSRLFAALF----SHGCIIVMTSNFI----PENLYKDEINRNVLVSF-- 197 (404) Q Consensus 140 -~~lLCfDEF~V~-----------DiaDAmil~rl~~~lf----~~gv~lV~TSN~~----P~dLY~~GLqR~~FlPf-- 197 (404) T Consensus 634 aP~~~f~deidaiaP~rG~~~~~~~vtd-~~~nqll~e~dG~~~~~~vvvi~atnrPdi~dPallrPGr~dr~i~vP~Pd 712 (980) T TIGR01243 634 APAIIFFDEIDAIAPARGASLDEKGVTD-RIVNQLLTELDGLEELSDVVVIAATNRPDILDPALLRPGRLDRLILVPAPD 712 (980) T ss_pred CCEEEEEECHHHHCCCCCCCCCCCCHHH-HHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCC T ss_conf 8737873021110541244210010268-999999986404434366589861588742361004887412168605985 Q ss_pred ----HHHHHHCCEEEECCCCCHHHHC Q ss_conf ----9999850508980473112211 Q gi|254781047|r 198 ----IELLEKKLEIISLDSGQDYRRK 219 (404) Q Consensus 198 ----I~~lk~~~~V~~l~~~~DYR~~ 219 (404) T Consensus 713 ~~ar~~ifk~ht~~~~l~~dv~l~~l 738 (980) T TIGR01243 713 EEARLEIFKIHTRSMPLAEDVDLEEL 738 (980) T ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHH T ss_conf 56767676553111353013438999 |
It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity. |
| >KOG0728 consensus | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.023 Score=35.10 Aligned_cols=139 Identities=20% Similarity=0.296 Sum_probs=69.6 Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEE Q ss_conf 68864998888877289999999985781114688899999999999999713112246655780789999996138799 Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVL 143 (404) Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lL 143 (404) T Consensus 179 aQPKGvlLygppgtGktLlaraVahht~c~f-irvsgselvq---k~i----geg----srmvrelfvmareha--psii 244 (404) T KOG0728 179 AQPKGVLLYGPPGTGKTLLARAVAHHTDCTF-IRVSGSELVQ---KYI----GEG----SRMVRELFVMAREHA--PSII 244 (404) T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHCCEEE-EEECHHHHHH---HHH----HHH----HHHHHHHHHHHHHCC--CCEE T ss_conf 8876048846999756299999875414079-9964499999---985----013----899999999987508--8267 Q ss_pred EEEEEEECCCH----------HHHHHHHHHHHHH-------HCCCEEEEECCCC----HHHHHCCCCCHHH-HHH----- Q ss_conf 98423204713----------5888999999998-------5496899817868----6775238740566-898----- Q gi|254781047|r 144 CFDEFMITNIA----------DAIILSRLFAALF-------SHGCIIVMTSNFI----PENLYKDEINRNV-LVS----- 196 (404) Q Consensus 144 CfDEF~V~Dia----------DAmil~rl~~~lf-------~~gv~lV~TSN~~----P~dLY~~GLqR~~-FlP----- 196 (404) T Consensus 245 fmdeid--sigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~a 322 (404) T KOG0728 245 FMDEID--SIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEA 322 (404) T ss_pred EEHHCC--CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCCCCCCCCCHHH T ss_conf 500001--212343457898638999999999974024000366269984164222468663877545556489987788 Q ss_pred HHHHHHHCCEEEECCCCCHHHH Q ss_conf 9999985050898047311221 Q gi|254781047|r 197 FIELLEKKLEIISLDSGQDYRR 218 (404) Q Consensus 197 fI~~lk~~~~V~~l~~~~DYR~ 218 (404) T Consensus 323 r~~ilkihsrkmnl~rgi~l~k 344 (404) T KOG0728 323 RLDILKIHSRKMNLTRGINLRK 344 (404) T ss_pred HHHHHHHHHHHHHHHCCCCHHH T ss_conf 8789988555301330667899 |
|
| >COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.011 Score=37.13 Aligned_cols=113 Identities=20% Similarity=0.197 Sum_probs=60.9 Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH--HCCCCEE Q ss_conf 86499888887728999999998578111468889999999999999971311224665578078999999--6138799 Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSI--ALESRVL 143 (404) Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l--~~~~~lL 143 (404) T Consensus 48 l~SmIl~GPPG~GKTTlA~liA~~~~~------~f~~~sA-v~~gvkdlr~-----------i~e~-a~~~~~~gr~tiL 108 (436) T COG2256 48 LHSMILWGPPGTGKTTLARLIAGTTNA------AFEALSA-VTSGVKDLRE-----------IIEE-ARKNRLLGRRTIL 108 (436) T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCC------CEEEECC-CCCCHHHHHH-----------HHHH-HHHHHHCCCCEEE T ss_conf 860577789998888999999876177------6699515-2346799999-----------9999-9998725883499 Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCC Q ss_conf 984232047135888999999998549689981786867752387405668989999985050898047 Q gi|254781047|r 144 CFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDS 212 (404) Q Consensus 144 CfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~ 212 (404) T Consensus 109 flDEIHRfnK~QQD~---lLp~vE~G~iilIGATTENPsF~----l--------n~ALlSR~~vf~lk~ 162 (436) T COG2256 109 FLDEIHRFNKAQQDA---LLPHVENGTIILIGATTENPSFE----L--------NPALLSRARVFELKP 162 (436) T ss_pred EEEHHHHCCHHHHHH---HHHHHCCCEEEEEECCCCCCCEE----E--------CHHHHHHHHEEEEEC T ss_conf 872253337445655---10332488689996267898714----0--------388861104156516 |
|
| >KOG2028 consensus | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.016 Score=36.13 Aligned_cols=117 Identities=18% Similarity=0.229 Sum_probs=55.6 Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH--HHHHCCCC Q ss_conf 6886499888887728999999998578111468889999999999999971311224665578078999--99961387 Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVA--SSIALESR 141 (404) Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va--~~l~~~~~ 141 (404) T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~tsk~~S---yrf----velSA----t~a~---t~-dvR~ife~aq~~~~l~krkT 224 (554) T KOG2028 160 NRIPSMILWGPPGTGKTTLARLIASTSKKHS---YRF----VELSA----TNAK---TN-DVRDIFEQAQNEKSLTKRKT 224 (554) T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHCCCCC---EEE----EEEEC----CCCC---HH-HHHHHHHHHHHHHHHHCCEE T ss_conf 8887058866998765889999986057774---279----99741----4566---18-89999999887876524406 Q ss_pred EEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEE-ECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECC Q ss_conf 9998423204713588899999999854968998-178686775238740566898999998505089804 Q gi|254781047|r 142 VLCFDEFMITNIADAIILSRLFAALFSHGCIIVM-TSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLD 211 (404) Q Consensus 142 lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~-TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~ 211 (404) T Consensus 225 ilFiDEiHRFNksQQD----~fLP~VE~G~I~lIGATTENPS-------Fq-----ln~aLlSRC~VfvLe 279 (554) T KOG2028 225 ILFIDEIHRFNKSQQD----TFLPHVENGDITLIGATTENPS-------FQ-----LNAALLSRCRVFVLE 279 (554) T ss_pred EEEEHHHHHHHHHHHH----CCCCEECCCCEEEEECCCCCCC-------CC-----HHHHHHHCCCEEEEC T ss_conf 9873776553232110----0342130670699853668976-------01-----127787316066733 |
|
| >PRK10923 glnG nitrogen regulation protein NR(I); Provisional | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.062 Score=32.35 Aligned_cols=126 Identities=17% Similarity=0.145 Sum_probs=67.3 Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHH--HHHHHH-HHHHHHHHHC-CCCCCCCCCCCHHHHHHHHHHCC Q ss_conf 6886499888887728999999998578111468889--999999-9999999713-11224665578078999999613 Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHF--YEFMKD-VHSRIIMYRK-KIEFGEILESDPIPLVASSIALE 139 (404) Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HF--h~FM~~-ih~~l~~~~~-~~~~~~~~~~dpl~~va~~l~~~ 139 (404) T Consensus 159 ~~~~pVLI~GE~GTGK~~~Ar~IH~~S~r~~~pfi~vnC~~~~~~~~e~eLFG~~~gaf~ga~~~-~~g~~----e~a~- 232 (469) T PRK10923 159 RSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTI-RQGRF----EQAD- 232 (469) T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCCC-CCCCH----HHCC- T ss_conf 88997899898982699999999974887799957876788997789999708766787886424-58736----6438- Q ss_pred CCEEEEEEEEECCCHHHHHHHHHHHH-H---------HHCCCEEEEECCCCHHHHHCCCCCHHHHH Q ss_conf 87999842320471358889999999-9---------85496899817868677523874056689 Q gi|254781047|r 140 SRVLCFDEFMITNIADAIILSRLFAA-L---------FSHGCIIVMTSNFIPENLYKDEINRNVLV 195 (404) Q Consensus 140 ~~lLCfDEF~V~DiaDAmil~rl~~~-l---------f~~gv~lV~TSN~~P~dLY~~GLqR~~Fl 195 (404) T Consensus 233 ~GTLfLdeI~~L~~~~Q~kLl~~L~~~~~~~~g~~~~~~~d~RiIaat~~~L~~~v~~g~Fr~dLy 298 (469) T PRK10923 233 GGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 (469) T ss_pred CCCEEHHHHHHCCHHHHHHHHHHHHCCCEEECCCCCEEEECCEEEEECCCCHHHHHHHCCHHHHHH T ss_conf 992656636648999999999998559378579985122143799707879999866081779999 |
|
| >PRK10787 DNA-binding ATP-dependent protease La; Provisional | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.036 Score=33.85 Aligned_cols=129 Identities=17% Similarity=0.194 Sum_probs=70.9 Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEE Q ss_conf 64998888877289999999985781114688899999999999999713112246655780789999996138799984 Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCFD 146 (404) Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCfD 146 (404) T Consensus 350 ~IlclvGpPGvGKTSl~~sIA~al~r~f-~risl----GGv~De-aeirGHrrTYvgampGrii~~l~~a~~~nPv~llD 423 (784) T PRK10787 350 PILCLVGPPGVGKTSLGQSIAKATGRKY-VRMAL----GGVRDE-AEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLD 423 (784) T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCE-EEEEC----CCCCCH-HHHCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEH T ss_conf 7799646998772469999999858986-99806----887888-88256433434436838999999748988566500 Q ss_pred EE------EECCCHHHHHHHHHHH---------HH----HH-CCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCE Q ss_conf 23------2047135888999999---------99----85-49689981786867752387405668989999985050 Q gi|254781047|r 147 EF------MITNIADAIILSRLFA---------AL----FS-HGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLE 206 (404) Q Consensus 147 EF------~V~DiaDAmil~rl~~---------~l----f~-~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~ 206 (404) T Consensus 424 EiDK~~~~~~Gdp~salL--EvLDpeQN~~F~Dhyl~~~~DlS~v~Fi~TaN~~-~--ip~------------pLlDRmE 486 (784) T PRK10787 424 EIDKMSSDMRGDPASALL--EVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-N--IPA------------PLLDRME 486 (784) T ss_pred HHHHHCCCCCCCHHHHHH--HHCCHHHCCCCCCCEEECCCCHHHEEEEEECCCC-C--CCH------------HHHHHEE T ss_conf 355522455899889999--8459765564000322046452225899732767-7--876------------7763121 Q ss_pred EEECCCCCHHHH Q ss_conf 898047311221 Q gi|254781047|r 207 IISLDSGQDYRR 218 (404) Q Consensus 207 V~~l~~~~DYR~ 218 (404) T Consensus 487 ~i~~~gYt~~eK 498 (784) T PRK10787 487 VIRLSGYTEDEK 498 (784) T ss_pred EEEECCCCHHHH T ss_conf 554116767889 |
|
| >PRK11608 pspF phage shock protein operon transcriptional activator; Provisional | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.023 Score=35.05 Aligned_cols=122 Identities=13% Similarity=0.130 Sum_probs=64.5 Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCHHH--HHHHHHHHH-HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEE Q ss_conf 649988888772899999999857811146--888999999-99999999713112246655780789999996138799 Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPIEKKC--RLHFYEFMK-DVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVL 143 (404) Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~--R~HFh~FM~-~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lL 143 (404) T Consensus 30 ~pVLI~GE~GtGK~~~Ar~IH~~S~r~~~pfi~v~C~~l~~~~~e~~LFG~~~g~~~~~~--~~~~g~l--e-~a~gGTL 104 (325) T PRK11608 30 KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQ--KRHPGRF--E-RADGGTL 104 (325) T ss_pred CCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHCCCCCCCCCCCC--CCCCCHH--H-CCCCCEE T ss_conf 998988989837999999999658867999778877989977889987277556767753--2468734--3-5689869 Q ss_pred EEEEEEECCCHHHHHHHHHHHHHH-------------HCCCEEEEECCCCHHHHHCCCCCHHHHHH Q ss_conf 984232047135888999999998-------------54968998178686775238740566898 Q gi|254781047|r 144 CFDEFMITNIADAIILSRLFAALF-------------SHGCIIVMTSNFIPENLYKDEINRNVLVS 196 (404) Q Consensus 144 CfDEF~V~DiaDAmil~rl~~~lf-------------~~gv~lV~TSN~~P~dLY~~GLqR~~FlP 196 (404) T Consensus 105 ~L~eI~~l~~~---~Q~~Ll~~l~~~~~~r~g~~~~~~~~~RiIa~t~~~l~~lv~~g~fr~dLy~ 167 (325) T PRK11608 105 FLDELATAPML---VQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLD 167 (325) T ss_pred EEECHHHCCHH---HHHHHHHHHHCCCEEECCCCCCCCCCEEEEECCCHHHHHHHHHCCCHHHHHH T ss_conf 97374547999---9999999986490885799876656468871332208999983956799985 |
|
| >PRK07270 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.071 Score=31.96 Aligned_cols=123 Identities=14% Similarity=0.199 Sum_probs=69.9 Q ss_pred EEE-ECCCCCCHHHHHHHHHHHCCCCHH--------HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH---- Q ss_conf 998-888877289999999985781114--------6888999999999999997131122466557807899999---- Q gi|254781047|r 69 IYL-HGDVGQGKSMLMNLFFALVPIEKK--------CRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASS---- 135 (404) Q Consensus 69 lYL-~G~VG~GKT~LMdlFy~~l~~~~K--------~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~---- 135 (404) T Consensus 39 AyLF~GP~GtGKts~ArifAkaLnC~~~~~~~pC~~C~~-C~~i~~g~~~DviEidaas~---~-gVd~IRei~~~~~~~ 113 (557) T PRK07270 39 AYLFSGPRGTGKTSAAKIFAKAMNCPNQVDGEPCNNCDI-CRDITNGSLEDVIEIDAASN---N-GVDEIRDIRDKSTYA 113 (557) T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHH-HHHHHCCCCCCEEEECCCCC---C-CHHHHHHHHHHHCCC T ss_conf 442108998689999999999957999899998887779-99987589997487347776---7-889999999984238 Q ss_pred -HHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECC Q ss_conf -9613879998423204713588899999999854968998178686775238740566898999998505089804 Q gi|254781047|r 136 -IALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLD 211 (404) Q Consensus 136 -l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~ 211 (404) T Consensus 114 P~~~~yKV~IIDEah~Ls~~A~NALLKtLEEPP~~~vFIL~Tte--p~kI-------------l~TI~SRCQrf~F~ 175 (557) T PRK07270 114 PSRATYKVYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTE--LHKI-------------PATILSRVQRFEFK 175 (557) T ss_pred CCCCCEEEEEECCHHHCCHHHHHHHHHHHHCCCCCEEEEEEECC--HHHC-------------CHHHHHHHHHCCCC T ss_conf 77788389997144534999999899985289987699998499--4759-------------28887430001088 |
|
| >PRK10820 DNA-binding transcriptional regulator TyrR; Provisional | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.073 Score=31.88 Aligned_cols=115 Identities=16% Similarity=0.149 Sum_probs=63.3 Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHH--HHHH-HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC Q ss_conf 8864998888877289999999985781114688899--9999-999999997131122466557807899999961387 Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFY--EFMK-DVHSRIIMYRKKIEFGEILESDPIPLVASSIALESR 141 (404) Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh--~FM~-~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~ 141 (404) T Consensus 226 ~d~pVLI~GEsGTGKellAraIH~~S~R~~~pFv~vnC~alp~~l~eseLFG~a~~-------~~~G~f----e-~A~gG 293 (513) T PRK10820 226 LSAPLLITGDTGTGKDLFAYACHLASPRAKKPYLALNCASIPEDAVESELFGHAPE-------GKKGFF----E-QANGG 293 (513) T ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHCCCCCC-------CCCCCE----E-ECCCC T ss_conf 89988998989824999999999668878998268889989967899986387666-------889755----7-85898 Q ss_pred EEEEEEEEECCCHHHHHHHHHHHHHHHC-------------CCEEEEECCCCHHHHHCCCCCHHHH Q ss_conf 9998423204713588899999999854-------------9689981786867752387405668 Q gi|254781047|r 142 VLCFDEFMITNIADAIILSRLFAALFSH-------------GCIIVMTSNFIPENLYKDEINRNVL 194 (404) Q Consensus 142 lLCfDEF~V~DiaDAmil~rl~~~lf~~-------------gv~lV~TSN~~P~dLY~~GLqR~~F 194 (404) T Consensus 294 TLfLdEI~~l~~~---~Q~kLLr~Lq~~~~~rvG~~~~~~~dvRiIaaT~~dL~~lv~~g~FReDL 356 (513) T PRK10820 294 SVLLDEIGEMSPR---MQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGLFREDL 356 (513) T ss_pred EEEEECHHHCCHH---HHHHHHHHHHCCEEEECCCCCEEEEEEEEEECCCHHHHHHHHCCCCCHHH T ss_conf 8999783659999---99999999868979965998535677899962653099998729850889 |
|
| >pfam05621 TniB Bacterial TniB protein | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.26 Score=28.40 Aligned_cols=139 Identities=16% Similarity=0.132 Sum_probs=68.7 Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCHH-----HH---------HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH Q ss_conf 8864998888877289999999985781114-----68---------889999999999999971311224665578078 Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKK-----CR---------LHFYEFMKDVHSRIIMYRKKIEFGEILESDPIP 130 (404) Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K-----~R---------~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~ 130 (404) T Consensus 60 Rmp~lLlvGdsnnGKT~Iv~rF~~~hp~~~d~~~~~~PVl~vq~P~~p~~~~lY~~IL~~l~aP~~~-----~~~~~~~~ 134 (302) T pfam05621 60 RMPNLLLVGPTNNGKSMIVEKFRRAHPAGSDADQEHIPVLVVQMPSEPSVIRFYVALLAAMGAPLRP-----RPRLPEME 134 (302) T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCC-----CCCHHHHH T ss_conf 8875588707988789999999996799878666702189997699988689999999983787788-----87789999 Q ss_pred HHHHHHHC--CCCEEEEEEEEECCCHHHHHHHHHHHHHHH----CCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHC Q ss_conf 99999961--387999842320471358889999999985----496899817868677523874056689899999850 Q gi|254781047|r 131 LVASSIAL--ESRVLCFDEFMITNIADAIILSRLFAALFS----HGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKK 204 (404) Q Consensus 131 ~va~~l~~--~~~lLCfDEF~V~DiaDAmil~rl~~~lf~----~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~ 204 (404) T Consensus 135 ~~~~~ll~~~~vrmLIIDEiHnlL~Gs~~~qr~~ln~LK~L~Nel~IpiV~vGt~eA~----------~ai~tD~QlasR 204 (302) T pfam05621 135 QLALALLRKVGVRMLVIDELHNVLAGNSVNRREFLNLLRFLGNELRIPLVGVGTRDAY----------LAIRSDDQLENR 204 (302) T ss_pred HHHHHHHHHCCCCEEEEECHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCHHHH----------HHHHCCHHHHHH T ss_conf 9999999974987899854365604868899999999999863658786995319999----------997068888850 Q ss_pred CEEEECC---CCCHHHH Q ss_conf 5089804---7311221 Q gi|254781047|r 205 LEIISLD---SGQDYRR 218 (404) Q Consensus 205 ~~V~~l~---~~~DYR~ 218 (404) T Consensus 205 F~~~~Lp~W~~d~ef~~ 221 (302) T pfam05621 205 FEPMLLPPWEANDDCCS 221 (302) T ss_pred CCCCCCCCCCCCCHHHH T ss_conf 58611688889808999 |
This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein which is involved in Tn5053 mercury resistance transposition. |
| >KOG2004 consensus | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.28 Score=28.21 Aligned_cols=122 Identities=21% Similarity=0.307 Sum_probs=74.5 Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH----HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCC Q ss_conf 886499888887728999999998578111468889999----9999999999713112246655780789999996138 Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEF----MKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALES 140 (404) Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~F----M~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~ 140 (404) T Consensus 437 qGkIlCf~GPPGVGKTSI~kSIA~ALn--Rk----FfRfSvGG~tDvA-eIkGHRRTYVGAM---PGkiIq~LK~v~t~N 506 (906) T KOG2004 437 QGKILCFVGPPGVGKTSIAKSIARALN--RK----FFRFSVGGMTDVA-EIKGHRRTYVGAM---PGKIIQCLKKVKTEN 506 (906) T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHC--CC----EEEEECCCCCCHH-HHCCCCEEEECCC---CHHHHHHHHHHCCCC T ss_conf 883799868998773218999999848--74----6998536634277-6425421100148---848999998617788 Q ss_pred CEEEEEEE------EECCCHHHHHH-------HHHHHHHHH-----CCCEEEEECCCC---HHHHHCCCCCHHHHHHHHH Q ss_conf 79998423------20471358889-------999999985-----496899817868---6775238740566898999 Q gi|254781047|r 141 RVLCFDEF------MITNIADAIIL-------SRLFAALFS-----HGCIIVMTSNFI---PENLYKDEINRNVLVSFIE 199 (404) Q Consensus 141 ~lLCfDEF------~V~DiaDAmil-------~rl~~~lf~-----~gv~lV~TSN~~---P~dLY~~GLqR~~FlPfI~ 199 (404) T Consensus 507 PliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~----------------- 569 (906) T KOG2004 507 PLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPP----------------- 569 (906) T ss_pred CEEEEEHHHHHCCCCCCCHHHHHHHHCCHHHCCCHHHHCCCCCCCHHHEEEEEECCCCCCCCH----------------- T ss_conf 658853223417887798689998743965355345420266421110688985364456985----------------- Q ss_pred HHHHCCEEEECCCC Q ss_conf 99850508980473 Q gi|254781047|r 200 LLEKKLEIISLDSG 213 (404) Q Consensus 200 ~lk~~~~V~~l~~~ 213 (404) T Consensus 570 pLlDRMEvIelsGY 583 (906) T KOG2004 570 PLLDRMEVIELSGY 583 (906) T ss_pred HHHHHHHEEECCCC T ss_conf 66412232203672 |
|
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family; InterPro: IPR014252 This entry shows some relation to the widely distributed ATP-dependent protease La, also called Lon or LonA (IPR004815 from INTERPRO), but is more closely related to LonB (IPR014251 from INTERPRO), a LonA paralog found only in endospore-forming bacteria | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.081 Score=31.60 Aligned_cols=149 Identities=21% Similarity=0.265 Sum_probs=86.6 Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH-------------------------HHHHHHHHHC Q ss_conf 666886499888887728999999998578111468889999999-------------------------9999999713 Q gi|254781047|r 62 KYCSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKD-------------------------VHSRIIMYRK 116 (404) Q Consensus 62 ~~~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~-------------------------ih~~l~~~~~ 116 (404) T Consensus 172 aSPfPQHiiLYGPPGVGKTTaARl~LEe~K~-----~~~tPF~~DA~FvEVDGtTLRWDPREvTNPLLGSVHDPIYQGa- 245 (616) T TIGR02903 172 ASPFPQHIILYGPPGVGKTTAARLALEEAKK-----LKNTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGA- 245 (616) T ss_pred CCCCCCCEEEECCCCCCHHHHHHHHHHHCCC-----CCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC- T ss_conf 1888660785573388478999998762136-----8744761137857515762667741014776776257655676- Q ss_pred CCCCCCCCCCCHHHHHHHHHHCCCC--EEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHH Q ss_conf 1122466557807899999961387--99984232047135888999999998549689981786867752387405668 Q gi|254781047|r 117 KIEFGEILESDPIPLVASSIALESR--VLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVL 194 (404) Q Consensus 117 ~~~~~~~~~~dpl~~va~~l~~~~~--lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~F 194 (404) T Consensus 246 ~RDLAE~GvPEPk----~GLVT~AHGGvLFIDEIGE---LD~lLQnKLLKVLEDKrV-~F~SsYYDpdD~--N------- 308 (616) T TIGR02903 246 RRDLAETGVPEPK----LGLVTDAHGGVLFIDEIGE---LDPLLQNKLLKVLEDKRV-EFSSSYYDPDDE--N------- 308 (616) T ss_pred CHHHCCCCCCCCC----CCCCCCCCCCEEEEECHHH---HHHHHHHHHHHHHCCCEE-EEEECCCCCCCC--C------- T ss_conf 4011047879898----9871004775676502112---227876324443226436-653212487537--8------- Q ss_pred HH-HHHHHHHCCEEEECCCCCHHHHCCCCC--------------CCEEEECCCHHHHHHH Q ss_conf 98-999998505089804731122112367--------------8302203530226899 Q gi|254781047|r 195 VS-FIELLEKKLEIISLDSGQDYRRKEQSI--------------LPIYMTPLNSYNRVLM 239 (404) Q Consensus 195 lP-fI~~lk~~~~V~~l~~~~DYR~~~~~~--------------~~~y~~p~~~~~~~~l 239 (404) T Consensus 309 vPkYIK~l------Fe~GAPADFvLIGATTr~P~eINpALRSRCaEvfFePL~p~dI~~I 362 (616) T TIGR02903 309 VPKYIKKL------FEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIKEI 362 (616) T ss_pred CCHHHHHH------HCCCCCCCEEEECCCCCCHHHCCHHHHCCCCEEECCCCCHHHHHHH T ss_conf 65588885------2268882568726615882440512330143132179887899999 |
Proteins in this entry are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ). They are restricted to a subset of endospore-forming species, and probably participate in the program of endospore formation. We propose the designation LonC.. |
| >PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.088 Score=31.37 Aligned_cols=120 Identities=17% Similarity=0.126 Sum_probs=67.9 Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHH-----HHHHHHHHHHHHH-HCCCCCCCCCCCCHHHHHHHHHH Q ss_conf 68864998888877289999999985781114688899-----9999999999997-13112246655780789999996 Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFY-----EFMKDVHSRIIMY-RKKIEFGEILESDPIPLVASSIA 137 (404) Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh-----~FM~~ih~~l~~~-~~~~~~~~~~~~dpl~~va~~l~ 137 (404) T Consensus 207 ~sd~pVLI~GEtGTGKelvAr~IH~~S~R~~~Pfv~vNCaalpe~l--~EseLFGh~kGaFtGA-~~~r~G~--f--e~A 279 (510) T PRK05022 207 ASDLNVLITGETGVGKELVARAIHQASPRAVKPLVYLNCAALPESL--AESELFGHVKGAFTGA-ISNRSGK--F--ELA 279 (510) T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHHH--HHHHHCCCCCCCCCCC-CCCCCCC--E--EEC T ss_conf 8999889889898139999999996688789985788899998567--8998659777886886-5567881--0--177 Q ss_pred CCCCEEEEEEEEECCCHHHHHHHHHHHHHHH-------------CCCEEEEECCCCHHHHHCCCCCHHHH Q ss_conf 1387999842320471358889999999985-------------49689981786867752387405668 Q gi|254781047|r 138 LESRVLCFDEFMITNIADAIILSRLFAALFS-------------HGCIIVMTSNFIPENLYKDEINRNVL 194 (404) Q Consensus 138 ~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~-------------~gv~lV~TSN~~P~dLY~~GLqR~~F 194 (404) T Consensus 280 ~g-GTLfLDEI~~--Lpl~~-Q~KLLrvLq~g~iqrvG~~~~~~vdvRIIAATnrdL~~~V~~G~FR~DL 345 (510) T PRK05022 280 DG-GTLFLDEIGE--LPLAL-QAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVLAGRFRADL 345 (510) T ss_pred CC-CEEEEECHHH--CCHHH-HHHHHHHHHCCEEEECCCCCEEEEEEEEEEECCCCHHHHHHCCCHHHHH T ss_conf 89-8798757454--99999-9999999847958855899466666899960783599998839638999 |
|
| >KOG0731 consensus | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.022 Score=35.15 Aligned_cols=141 Identities=18% Similarity=0.227 Sum_probs=72.3 Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEE Q ss_conf 68864998888877289999999985781114688899999999999999713112246655780789999996138799 Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVL 143 (404) Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lL 143 (404) T Consensus 342 KiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~-svSGSEFvE-----~~~g~~-----asrvr-~lf~~ar~~--aP~ii 407 (774) T KOG0731 342 KIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFF-SVSGSEFVE-----MFVGVG-----ASRVR-DLFPLARKN--APSII 407 (774) T ss_pred CCCCCEEEECCCCCCHHHHHHHHHCCCCCCEE-EECHHHHHH-----HHCCCC-----HHHHH-HHHHHHHCC--CCEEE T ss_conf 67675178789998678999988530589646-413378888-----760343-----48889-999874326--98079 Q ss_pred EEEEEEECC------------CHHHHHHHHHHHHH----HHCCCEEEEECCCC----HHHHHCCCCCHHHHH--HH---- Q ss_conf 984232047------------13588899999999----85496899817868----677523874056689--89---- Q gi|254781047|r 144 CFDEFMITN------------IADAIILSRLFAAL----FSHGCIIVMTSNFI----PENLYKDEINRNVLV--SF---- 197 (404) Q Consensus 144 CfDEF~V~D------------iaDAmil~rl~~~l----f~~gv~lV~TSN~~----P~dLY~~GLqR~~Fl--Pf---- 197 (404) T Consensus 408 fideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r 487 (774) T KOG0731 408 FIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGR 487 (774) T ss_pred EECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCHHHCCCCCCCCCEECCCCCHHHH T ss_conf 71454200312556666788807888999887875277677847998116886642887649875555232469851416 Q ss_pred HHHHHHCCEEEECC-CCCHHHH Q ss_conf 99998505089804-7311221 Q gi|254781047|r 198 IELLEKKLEIISLD-SGQDYRR 218 (404) Q Consensus 198 I~~lk~~~~V~~l~-~~~DYR~ 218 (404) T Consensus 488 ~~i~~~h~~~~~~~~e~~dl~~ 509 (774) T KOG0731 488 ASILKVHLRKKKLDDEDVDLSK 509 (774) T ss_pred HHHHHHHHHCCCCCCCHHHHHH T ss_conf 8999998621577631567999 |
|
| >PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.15 Score=29.84 Aligned_cols=122 Identities=16% Similarity=0.132 Sum_probs=65.2 Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHH--HHH-HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC Q ss_conf 8864998888877289999999985781114688899--999-9999999997131122466557807899999961387 Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFY--EFM-KDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESR 141 (404) Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh--~FM-~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~ 141 (404) T Consensus 165 s~~~VLI~GEsGTGKe~~Ar~IH~~S~r~~~pFv~vnc~ai~~~l~eseLFG~~kgaftga~~~~~G~~----e~A-~gG 239 (457) T PRK11361 165 SQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLF----ERA-NEG 239 (457) T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCH----HHC-CCC T ss_conf 899589988998578999999998379889983876478798577899971876678788531469861----335-998 Q ss_pred EEEEEEEEECCCHHHHHHHHHHHHHHH-------------CCCEEEEECCCCHHHHHCCCCCHHHH Q ss_conf 999842320471358889999999985-------------49689981786867752387405668 Q gi|254781047|r 142 VLCFDEFMITNIADAIILSRLFAALFS-------------HGCIIVMTSNFIPENLYKDEINRNVL 194 (404) Q Consensus 142 lLCfDEF~V~DiaDAmil~rl~~~lf~-------------~gv~lV~TSN~~P~dLY~~GLqR~~F 194 (404) T Consensus 240 TLfLdeI~~l~~~---~Q~kLLr~L~~~~~~~~g~~~~~~~dvRiIaaT~~~L~~~v~~g~Fr~DL 302 (457) T PRK11361 240 TLLLDEIGEMPLV---LQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDL 302 (457) T ss_pred CEECCCHHHHHHH---HHHHHHHHHHCCCEEECCCCCEEEECCEEEECCCCCHHHHHHCCCCHHHH T ss_conf 2631466452399---99999999864927856997136653489965787859998758323889 |
|
| >PRK13531 regulatory ATPase RavA; Provisional | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.013 Score=36.64 Aligned_cols=126 Identities=20% Similarity=0.359 Sum_probs=69.1 Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHH--HHH------HHHHHCCCCCCCCCCCCHHHHHHHHHHC Q ss_conf 64998888877289999999985781114688899999999--999------9997131122466557807899999961 Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDV--HSR------IIMYRKKIEFGEILESDPIPLVASSIAL 138 (404) Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~i--h~~------l~~~~~~~~~~~~~~~dpl~~va~~l~~ 138 (404) T Consensus 40 ehvlllGPPGtAKS~larrl~~~~~~a~----~FeyLltRFstPeElFGP~si~~Lk~~---------g~y~R~t~G~LP 106 (498) T PRK13531 40 ESVFLLGPPGIAKSLIARRLKFAFQHAR----AFEYLMTRFSTPEEVFGPLSIQALKDE---------GRYERLTSGYLP 106 (498) T ss_pred CCEEEECCCCHHHHHHHHHHHHHHCCCH----HHHHHHHCCCCHHHHCCCCCHHHHHHC---------CEEEEECCCCCC T ss_conf 9469888995138899999999855740----899998746988885383329987117---------848972267588 Q ss_pred CCCEEEEEEEEECCCHHHHHHHHHHHHH----HHCCC--------EEEEECCCCHHHHHCCCCCH--HHHHHHHHHHHHC Q ss_conf 3879998423204713588899999999----85496--------89981786867752387405--6689899999850 Q gi|254781047|r 139 ESRVLCFDEFMITNIADAIILSRLFAAL----FSHGC--------IIVMTSNFIPENLYKDEINR--NVLVSFIELLEKK 204 (404) Q Consensus 139 ~~~lLCfDEF~V~DiaDAmil~rl~~~l----f~~gv--------~lV~TSN~~P~dLY~~GLqR--~~FlPfI~~lk~~ 204 (404) T Consensus 107 ~A~iaFLDEIfKan---sAILNtLLtilNEr~f~nG~~~~~vPL~~li~ASNElP~~--~~~L~AlyDRfL-------~R 174 (498) T PRK13531 107 EAEIVFLDEIWKAG---PAILNTLLTAINERRFRNGAHEEKIPMRLLVAASNELPEA--DSSLEALYDRML-------IR 174 (498) T ss_pred CCEEEHHHHHHHCC---HHHHHHHHHHHHHHEECCCCCEECCCHHHHHHCCCCCCCC--CCCHHHHHHHHH-------HH T ss_conf 66131578786148---8999999998646403479831304468864304679999--840788887644-------10 Q ss_pred CEEEECCCCCHHH Q ss_conf 5089804731122 Q gi|254781047|r 205 LEIISLDSGQDYR 217 (404) Q Consensus 205 ~~V~~l~~~~DYR 217 (404) T Consensus 175 ~~v~~v~~~~nF~ 187 (498) T PRK13531 175 LWLDKVQDKANFR 187 (498) T ss_pred EECCCCCCHHHHH T ss_conf 2231316766799 |
|
| >PRK10365 transcriptional regulatory protein ZraR; Provisional | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.32 Score=27.81 Aligned_cols=123 Identities=16% Similarity=0.122 Sum_probs=65.3 Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHH--HHH-HHHHHHHHHHHCCCCCCCC-CCCCHHHHHHHHHHCC Q ss_conf 68864998888877289999999985781114688899--999-9999999997131122466-5578078999999613 Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFY--EFM-KDVHSRIIMYRKKIEFGEI-LESDPIPLVASSIALE 139 (404) Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh--~FM-~~ih~~l~~~~~~~~~~~~-~~~dpl~~va~~l~~~ 139 (404) T Consensus 160 ~s~~pVLI~GE~GTGK~~~Ar~IH~~S~r~~~pfv~vnC~~l~~~l~eseLFG~~~gaftga~~~~~g~~------~~A~ 233 (441) T PRK10365 160 PSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRF------VEAD 233 (441) T ss_pred CCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCE------EECC T ss_conf 8899489989998109999999996578778980798789898455589861775568789653468987------7889 Q ss_pred CCEEEEEEEEECCCHHHHHHHHHHHHHHH-------------CCCEEEEECCCCHHHHHCCCCCHHHHH Q ss_conf 87999842320471358889999999985-------------496899817868677523874056689 Q gi|254781047|r 140 SRVLCFDEFMITNIADAIILSRLFAALFS-------------HGCIIVMTSNFIPENLYKDEINRNVLV 195 (404) Q Consensus 140 ~~lLCfDEF~V~DiaDAmil~rl~~~lf~-------------~gv~lV~TSN~~P~dLY~~GLqR~~Fl 195 (404) T Consensus 234 gGTLfLdeI~~l~~~---~Q~kLl~~l~~~~~~~~g~~~~~~~d~RiIaat~~~l~~~v~~g~Fr~dLy 299 (441) T PRK10365 234 GGTLFLDEIGDISPM---MQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 (441) T ss_pred CCEECCCCCCCCCHH---HHHHHHHHHHHHHHCCCCCCCEEECCCEEEECCCCCHHHHHHCCCCHHHHH T ss_conf 982550231529999---999999877752100058873441363799837889999988198258999 |
|
| >TIGR02902 spore_lonB ATP-dependent protease LonB; InterPro: IPR014251 This entry represents LonB, a paralog of the ATP-dependent protease La (LonA, IPR004815 from INTERPRO) | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.04 Score=33.51 Aligned_cols=141 Identities=16% Similarity=0.242 Sum_probs=72.3 Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHH--HHHHHHHHHHHHHCCCCCCCCCCCCHHH----------- Q ss_conf 688649988888772899999999857811146888999--9999999999971311224665578078----------- Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYE--FMKDVHSRIIMYRKKIEFGEILESDPIP----------- 130 (404) Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~--FM~~ih~~l~~~~~~~~~~~~~~~dpl~----------- 130 (404) T Consensus 84 PNPQHVIiYGPPGVGKTAAARLVLeeAKk~~-~-SPFke~A~FVEiDAT------T~RFDERGIADPLIGSVHDPIYQGA 155 (532) T TIGR02902 84 PNPQHVIIYGPPGVGKTAAARLVLEEAKKNP-A-SPFKEEAAFVEIDAT------TARFDERGIADPLIGSVHDPIYQGA 155 (532) T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHCCC-C-CCCCCCCEEEEEECC------CCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 6896389878869617899999999865087-5-378988668985051------0360214666656776158533376 Q ss_pred -----------HHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEE----EECCC----CHHHHHCCCCC Q ss_conf -----------999999613879998423-20471358889999999985496899----81786----86775238740 Q gi|254781047|r 131 -----------LVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSHGCIIV----MTSNF----IPENLYKDEIN 190 (404) Q Consensus 131 -----------~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV----~TSN~----~P~dLY~~GLq 190 (404) T Consensus 156 GplG~AGIPQPK~GAVT~AHGGvLFIDEIGELHP----~~MNKLLKVLEDRKVFLdSAYY~s~~pniP~hI~dIFqnGl- 230 (532) T TIGR02902 156 GPLGVAGIPQPKPGAVTKAHGGVLFIDEIGELHP----VQMNKLLKVLEDRKVFLDSAYYSSEDPNIPSHIRDIFQNGL- 230 (532) T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCH----HHHHHHHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHCCCC- T ss_conf 5457885575877763202586551212466582----43531411330222000012358777865427899720678- Q ss_pred HHHHHHHHHHHHHCCEEEECCCCCHHHHCCCCC--------------CCEEEECCCHHHHHHH Q ss_conf 566898999998505089804731122112367--------------8302203530226899 Q gi|254781047|r 191 RNVLVSFIELLEKKLEIISLDSGQDYRRKEQSI--------------LPIYMTPLNSYNRVLM 239 (404) Q Consensus 191 R~~FlPfI~~lk~~~~V~~l~~~~DYR~~~~~~--------------~~~y~~p~~~~~~~~l 239 (404) T Consensus 231 ----------------------PADFRLiGATTR~PeEIpPAlRSRC~EIFFR~L~~EEi~~i 271 (532) T TIGR02902 231 ----------------------PADFRLIGATTRNPEEIPPALRSRCVEIFFRPLLKEEIKEI 271 (532) T ss_pred ----------------------CCCEECCCCCCCCCCCCCHHHHCCCEEEEECCCCHHHHHHH T ss_conf ----------------------73401213336987767834650522677168887899999 |
LonB proteins are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ) and are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore during sporulation, under control of sigmaF . The lonB gene, despite being located immediately upstream of lonA, was shown to be monocistronic. LonB appears to be involved in the post-translation control of sigmaH, but lonB mutation did not produce an obvious sporulation defect under the conditions tested . Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and these are excluded from this entry. . |
| >PRK05917 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.11 Score=30.80 Aligned_cols=131 Identities=15% Similarity=0.175 Sum_probs=76.8 Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH-----CC Q ss_conf 8864998888877289999999985781114688899999999999999713112246655780789999996-----13 Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIA-----LE 139 (404) Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~-----~~ 139 (404) T Consensus 18 l~HAyLf~Gp~G~GK~~~A~~~A~~LLc~~~p-~~~~~i~~~~HPD~~~i~pe~k-~~~~~Id~iR~l~~~i~~~p~~g~ 95 (290) T PRK05917 18 VPSAILLHGQDLSNLSQYAYELASLILLESSP-EAQYKISQKIHPDIHEFFPEGK-GRLHSIETPRAIKKQIWIHPYEAN 95 (290) T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHCCCCCEEEECCCCC-CCCCCHHHHHHHHHHHCCCCCCCC T ss_conf 66068768999865999999999998578996-1688987468998599615777-887867899999999641864688 Q ss_pred CCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCC Q ss_conf 8799984232047135888999999998549689981786867752387405668989999985050898047 Q gi|254781047|r 140 SRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDS 212 (404) Q Consensus 140 ~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~ 212 (404) T Consensus 96 ~KV~IId~Ad~Mn~~AaNALLKtLEEPP~~tvfILit~~--~~~l-------------LpTI~SRCQ~I~i~~ 153 (290) T PRK05917 96 YKIYIIHEADRMTLDAISAFLKVLEDPPKHSVIILTSAK--PQRL-------------PPTIRSRSLSIHIPG 153 (290) T ss_pred CEEEEECCHHHHCHHHHHHHHHHHCCCCCCEEEEEEECC--HHHC-------------CHHHHHCCCEEECCC T ss_conf 269997567763899999999973479878599998699--2548-------------237763351167776 |
|
| >PRK07399 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.52 Score=26.45 Aligned_cols=126 Identities=17% Similarity=0.249 Sum_probs=72.8 Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCH------HHHHHHHHHHHHHHHHHHHH------HCC-------------CCC Q ss_conf 86499888887728999999998578111------46888999999999999997------131-------------122 Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPIEK------KCRLHFYEFMKDVHSRIIMY------RKK-------------IEF 120 (404) Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~------K~R~HFh~FM~~ih~~l~~~------~~~-------------~~~ 120 (404) T Consensus 26 ~hAyLF~Gp~G~GK~~~A~~fa~~Ll~~~~~~~~~~~ri-----~~~nHPDl~~i~P~~~~~g~~~~~~~~~~~~~~~~~ 100 (314) T PRK07399 26 APAYLFAGPEGVGRKLAALRFIEGLLSQGSPSKNIRRRL-----EEGNHPDLLWVEPTYQHQGKLITASEAEEAGLKRKS 100 (314) T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHH-----HCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCC T ss_conf 744877899983299999999999857899997665587-----518999778860562003454557789876530268 Q ss_pred CCCCCCCHHHHHHHHH-----HCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHH Q ss_conf 4665578078999999-----61387999842320471358889999999985496899817868677523874056689 Q gi|254781047|r 121 GEILESDPIPLVASSI-----ALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLV 195 (404) Q Consensus 121 ~~~~~~dpl~~va~~l-----~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~Fl 195 (404) T Consensus 101 ~~~I~idqIR~l~~~l~~~p~~~~~kVvII~~ae~m~~~AaNaLLKtLEE-P~~~~fILit~~--~~~l----------- 166 (314) T PRK07399 101 PPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEE-PGNGTLILIAPS--PESL----------- 166 (314) T ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCHHHCCHHHHHHHHHHHCC-CCCCEEEEEECC--HHHC----------- T ss_conf 77787999999999973188568847999889787199999999986147-878569999799--3649----------- Q ss_pred HHHHHHHHCCEEEECCC Q ss_conf 89999985050898047 Q gi|254781047|r 196 SFIELLEKKLEIISLDS 212 (404) Q Consensus 196 PfI~~lk~~~~V~~l~~ 212 (404) T Consensus 167 --LpTI~SRCQ~i~F~~ 181 (314) T PRK07399 167 --LPTIVSRCQIIPFYR 181 (314) T ss_pred --CHHHHCCCEEEECCC T ss_conf --146641875633899 |
|
| >PRK06305 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.37 Score=27.42 Aligned_cols=126 Identities=12% Similarity=0.116 Sum_probs=69.5 Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCHHHH--------HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH--- Q ss_conf 6499888887728999999998578111468--------88999999999999997131122466557807899999--- Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPIEKKCR--------LHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASS--- 135 (404) Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R--------~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~--- 135 (404) T Consensus 40 HAyLF~GprGtGKTT~ArilAkaLnC~~~~~~~~pCg~C~~C~~I~~g~~~DViEiDaAs~---~-gVddIRel~e~v~~ 115 (462) T PRK06305 40 HAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAICKEISSGTSLDVIEIDGASH---R-GIEDIRQINETVLF 115 (462) T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCC---C-CHHHHHHHHHHHCC T ss_conf 2343038998599999999999967999988889887668889986389998686435534---4-66899999977100 Q ss_pred --HHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECC Q ss_conf --9613879998423204713588899999999854968998178686775238740566898999998505089804 Q gi|254781047|r 136 --IALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLD 211 (404) Q Consensus 136 --l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~ 211 (404) T Consensus 116 ~P~~~~yKVyIIDEvhmLs~~AfNALLKtLEEPP~~v~FILaTTe--~~KI-------------p~TIlSRCQrf~F~ 178 (462) T PRK06305 116 TPSKSQYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTE--IHKI-------------PGTILSRCQKMHLK 178 (462) T ss_pred CCCCCCEEEEEEECHHHCCHHHHHHHHHHHHCCCCCEEEEEEECC--HHHC-------------CHHHHHHHHEEECC T ss_conf 886775059998152117999999999986189877499998188--1428-------------54787654023325 |
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=93.08 E-value=0.74 Score=25.49 Aligned_cols=135 Identities=24% Similarity=0.287 Sum_probs=77.5 Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCC------------------HHHHH--HHHHH--------------HH-------- Q ss_conf 49988888772899999999857811------------------14688--89999--------------99-------- Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPIE------------------KKCRL--HFYEF--------------MK-------- 105 (404) Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~~------------------~K~R~--HFh~F--------------M~-------- 105 (404) T Consensus 33 ~~~llGpSG~GKTTlLr~iaGL~~p~~~~G~I~~~g~~v~~~~~~~R~ig~VFQ~~aLfPhltV~eNia~~L~~~~~~~~ 112 (362) T TIGR03258 33 LLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKA 112 (362) T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCEECCCCCHHHCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHH T ss_conf 99999999745999999997776777881799999999998998889948971798536898099999899986599999 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCH---------HHHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHC--CCEE Q ss_conf 99999999713112246655780---------78999999613879998423-204713588899999999854--9689 Q gi|254781047|r 106 DVHSRIIMYRKKIEFGEILESDP---------IPLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSH--GCII 173 (404) Q Consensus 106 ~ih~~l~~~~~~~~~~~~~~~dp---------l~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~--gv~l 173 (404) T Consensus 113 e~~~rv~e~l~~vgL~~~~~r~P~~LSGGq~QRVAlARAL~~~P~ilLlDEP~saLD~~~r~~l~~~l~~l~~~l~~~T~ 192 (362) T TIGR03258 113 DIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTI 192 (362) T ss_pred HHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEE T ss_conf 99999999987789967862696678998999999999975599989981887655999999999999999997679889 Q ss_pred E-EECCC----------------------CHHHHHCCCCCH--HHHHHHHHHHH Q ss_conf 9-81786----------------------867752387405--66898999998 Q gi|254781047|r 174 V-MTSNF----------------------IPENLYKDEINR--NVLVSFIELLE 202 (404) Q Consensus 174 V-~TSN~----------------------~P~dLY~~GLqR--~~FlPfI~~lk 202 (404) T Consensus 193 i~VTHD~~EA~~laDrI~Vm~~G~i~Q~gtp~eiy~~P~~~~vA~f~G~~n~~~ 246 (362) T TIGR03258 193 LCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAPADGFAAEFLGAANILP 246 (362) T ss_pred EEECCCHHHHHHHCCEEEEEECCEEEEEECHHHHHHCCCCHHHHHHCCCCCCCC T ss_conf 998999899998589999998999999818899986899848975169643255 |
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK08451 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=92.80 E-value=0.073 Score=31.89 Aligned_cols=127 Identities=15% Similarity=0.114 Sum_probs=74.4 Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCHHH-------HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH--- Q ss_conf 8649988888772899999999857811146-------888999999999999997131122466557807899999--- Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKC-------RLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASS--- 135 (404) Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~-------R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~--- 135 (404) T Consensus 36 ~HAYLFsGPrGvGKTt~ArifAkaLnC~~~~~~~PCg~C~sC~~i~~g~hpDViEiDaasn---~-gID~IReLie~~~~ 111 (523) T PRK08451 36 AHAYLFSGLRGSGKTSSARIFSRALVCEQGPSSTPCGTCAQCQAALEGRHIDIIEMDAASN---R-GIDDIRNLIEQTKY 111 (523) T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCC---C-CHHHHHHHHHHHCC T ss_conf 7158757899868899999999997599999989888788899986489998551055333---6-89999999997235 Q ss_pred --HHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECC Q ss_conf --9613879998423204713588899999999854968998178686775238740566898999998505089804 Q gi|254781047|r 136 --IALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLD 211 (404) Q Consensus 136 --l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~ 211 (404) T Consensus 112 ~P~~gryKV~IIDEah~Lt~~A~NALLKTLEEPP~~vvFILaTTe--p~KL-------------p~TIlSRCQ~f~Fk 174 (523) T PRK08451 112 KPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTD--PLKL-------------PATILSRTQHFRFK 174 (523) T ss_pred CCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEECCC--HHHC-------------HHHHHHHHHCCCCC T ss_conf 886797279998260304899999999970389878379997599--4768-------------48887420311033 |
|
| >KOG1514 consensus | Back alignment and domain information |
|---|
Probab=92.63 E-value=0.072 Score=31.90 Aligned_cols=129 Identities=13% Similarity=0.165 Sum_probs=69.4 Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHH-------HHHHHHH----HHHHHHHHHH-HHCCCCCCCCCCCCHHHH Q ss_conf 688649988888772899999999857811146-------8889999----9999999999-713112246655780789 Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKC-------RLHFYEF----MKDVHSRIIM-YRKKIEFGEILESDPIPL 131 (404) Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~-------R~HFh~F----M~~ih~~l~~-~~~~~~~~~~~~~dpl~~ 131 (404) T Consensus 420 ~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~----~~~~~al~~ 495 (767) T KOG1514 420 GLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGER----VTWDAALEA 495 (767) T ss_pred CCCEEEEEECCCCCCCEEHHHHHHHHHHHHHHHCCCCCCCEEEECCEEECCHHHHHHHHHHHCCCCC----CCHHHHHHH T ss_conf 7740799846999883212999999999877505789860798714461588999999999755574----307788999 Q ss_pred HHHHHH-----CCCCEEEEEEEEECCCHHHHHHHHHHHHHHH--CCCEEEEECCC--CHHHHHCC------CCCHHHHHH Q ss_conf 999996-----1387999842320471358889999999985--49689981786--86775238------740566898 Q gi|254781047|r 132 VASSIA-----LESRVLCFDEFMITNIADAIILSRLFAALFS--HGCIIVMTSNF--IPENLYKD------EINRNVLVS 196 (404) Q Consensus 132 va~~l~-----~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~--~gv~lV~TSN~--~P~dLY~~------GLqR~~FlP 196 (404) T Consensus 496 L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~p 575 (767) T KOG1514 496 LNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQP 575 (767) T ss_pred HHHHHCCCCCCCCCEEEEECCHHHHHCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHCCCHHHHCCCEEEECCC T ss_conf 98654167878787799963578773520988977740776789866999951656477988543112330650551377 |
|
| >PRK05896 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=92.42 E-value=0.85 Score=25.11 Aligned_cols=127 Identities=12% Similarity=0.102 Sum_probs=74.6 Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCHHHH-------HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH--- Q ss_conf 86499888887728999999998578111468-------88999999999999997131122466557807899999--- Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKCR-------LHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASS--- 135 (404) Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R-------~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~--- 135 (404) T Consensus 38 aHAYLFsGPrGvGKTTlArifAkaLnC~~~~~~dpCg~C~sC~~I~~g~h~DviEIdaas---n~-gIDeIReLie~~~~ 113 (613) T PRK05896 38 THAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELDAAS---NN-GVDEIRNIIDNINY 113 (613) T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCC---CC-CHHHHHHHHHHHCC T ss_conf 622775589984889999999999669999999988888789998569999868840655---57-88999999997085 Q ss_pred --HHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECC Q ss_conf --9613879998423204713588899999999854968998178686775238740566898999998505089804 Q gi|254781047|r 136 --IALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLD 211 (404) Q Consensus 136 --l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~ 211 (404) T Consensus 114 ~P~~gkyKV~IIDEah~Ln~~AaNALLKtLEEPP~~viFIL~Tte--p~KL-------------LpTIlSRCQrf~Fk 176 (613) T PRK05896 114 LPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTE--FQKI-------------PLTIISRCQRYNFK 176 (613) T ss_pred CCCCCCCEEEEECCHHHCCHHHHHHHHHHCCCCCCCCEEEEEECC--HHHC-------------CHHHHHCCCCEECC T ss_conf 875799459998162217999999999853489878379998288--1549-------------37664035500178 |
|
| >KOG2227 consensus | Back alignment and domain information |
|---|
Probab=92.24 E-value=0.51 Score=26.54 Aligned_cols=124 Identities=15% Similarity=0.185 Sum_probs=62.0 Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHH-HHHH---------HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH Q ss_conf 688649988888772899999999857811146-8889---------999999999999971311224665578078999 Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKC-RLHF---------YEFMKDVHSRIIMYRKKIEFGEILESDPIPLVA 133 (404) Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~-R~HF---------h~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va 133 (404) T Consensus 173 ~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s----~~~~~~~~~~~~ 248 (529) T KOG2227 173 NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVS----PGTGMQHLEKFE 248 (529) T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCC----CCHHHHHHHHHH T ss_conf 6676457517998654889999987403431665169985123542588999998889887428----950478999999 Q ss_pred HHHHCCCC--EEEEEEEEECCCHHHHHHHHHHHHH--HHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHH Q ss_conf 99961387--9998423204713588899999999--854968998178686775238740566898999 Q gi|254781047|r 134 SSIALESR--VLCFDEFMITNIADAIILSRLFAAL--FSHGCIIVMTSNFIPENLYKDEINRNVLVSFIE 199 (404) Q Consensus 134 ~~l~~~~~--lLCfDEF~V~DiaDAmil~rl~~~l--f~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~ 199 (404) T Consensus 249 ~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANsl--Dl------TdR~LprL~ 310 (529) T KOG2227 249 KHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSL--DL------TDRFLPRLN 310 (529) T ss_pred HHHHCCCCEEEEEECHHHHHHHCCCCEEEEEHHCCCCCCCEEEEEEEHHHH--HH------HHHHHHHHH T ss_conf 987525633898721256776046531432100136776605666400135--57------777766654 |
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=92.18 E-value=0.97 Score=24.74 Aligned_cols=135 Identities=19% Similarity=0.297 Sum_probs=76.3 Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCC----------------HHHHH--HHHHHHH----------------------HH Q ss_conf 49988888772899999999857811----------------14688--8999999----------------------99 Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPIE----------------KKCRL--HFYEFMK----------------------DV 107 (404) Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~~----------------~K~R~--HFh~FM~----------------------~i 107 (404) T Consensus 31 ~~~llGpsG~GKSTllr~i~Gl~~p~~G~I~i~g~~v~~~~~~~r~ig~vfQ~~~L~p~ltV~eNi~~~l~~~~~~~~e~ 110 (369) T PRK11000 31 FVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEI 110 (369) T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHH T ss_conf 99999999736999999997799999549999999998799778786999407854789899999977887638988999 Q ss_pred HHHHHHHHCCCCCCCCCCCCH---------HHHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHC-CCEEEEE Q ss_conf 999999713112246655780---------78999999613879998423-204713588899999999854-9689981 Q gi|254781047|r 108 HSRIIMYRKKIEFGEILESDP---------IPLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSH-GCIIVMT 176 (404) Q Consensus 108 h~~l~~~~~~~~~~~~~~~dp---------l~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~-gv~lV~T 176 (404) T Consensus 111 ~~rv~~~l~~~~l~~~~~r~p~~LSGGq~QRvaiARAL~~~P~illlDEP~s~LD~~~r~~~~~~l~~l~~~~g~T~i~v 190 (369) T PRK11000 111 NQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYV 190 (369) T ss_pred HHHHHHHHHHHCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHEEHHHHHHHHHHHHHCCEEEEE T ss_conf 99999999863745355588746694277999999886259985884366678886665247899999999869859999 Q ss_pred CCC-----------------------CHHHHHCCCCCH--HHHH--HHHHHHH Q ss_conf 786-----------------------867752387405--6689--8999998 Q gi|254781047|r 177 SNF-----------------------IPENLYKDEINR--NVLV--SFIELLE 202 (404) Q Consensus 177 SN~-----------------------~P~dLY~~GLqR--~~Fl--PfI~~lk 202 (404) T Consensus 191 THD~~eA~~laDrI~Vm~~G~i~q~GtP~eiy~~P~n~fVA~FiG~P~mN~l~ 243 (369) T PRK11000 191 THDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPANRFVAGFIGSPKMNFLP 243 (369) T ss_pred ECCHHHHHHHCCEEEEEECCEEEEEECHHHHHHCCCCHHHHHHCCCCCCCEEE T ss_conf 08999999859999999899899994899998689985898641998400178 |
|
| >PRK08058 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=92.06 E-value=0.62 Score=25.97 Aligned_cols=129 Identities=11% Similarity=0.166 Sum_probs=73.9 Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCHHH------HHH-HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH-- Q ss_conf 8649988888772899999999857811146------888-9999999999999971311224665578078999999-- Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKC------RLH-FYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSI-- 136 (404) Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~------R~H-Fh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l-- 136 (404) T Consensus 28 ~HA~Lf~Gp~G~GK~~~A~~~A~~LlC~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~---~~~i~idqiR~L~~~~~~ 104 (329) T PRK08058 28 AHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIESGNHPDVHLVAPD---GQSIKKDQIRYLKEEFSK 104 (329) T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCC---CCCCCHHHHHHHHHHHCC T ss_conf 61565578999889999999999973999999998878889999876999976774566---140779999999999643 Q ss_pred ---HCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCC Q ss_conf ---6138799984232047135888999999998549689981786867752387405668989999985050898047 Q gi|254781047|r 137 ---ALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDS 212 (404) Q Consensus 137 ---~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~ 212 (404) T Consensus 105 ~p~~g~~KV~II~~Ae~m~~~AaNALLKtLEEPp~~t~fIL~t~~--~~~l-------------LpTI~SRCq~i~f~~ 168 (329) T PRK08058 105 SGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGDTTAILLTEN--KHQI-------------LPTILSRCQVVEFRP 168 (329) T ss_pred CCCCCCCEEEEEECHHHHCHHHHHHHHHHHHCCCCCCEEEEEECC--HHHH-------------HHHHHHCCEEEECCC T ss_conf 875788679997347762999999999986468978679987299--6664-------------368863142565889 |
|
| >PRK08769 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=91.95 E-value=0.46 Score=26.79 Aligned_cols=135 Identities=13% Similarity=0.078 Sum_probs=72.4 Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCH-----HHHHHHHHHHHHHHHHHHHHHC--CCCCCCCCCCCHHH---HHHH Q ss_conf 886499888887728999999998578111-----4688899999999999999713--11224665578078---9999 Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEK-----KCRLHFYEFMKDVHSRIIMYRK--KIEFGEILESDPIP---LVAS 134 (404) Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~-----K~R~HFh~FM~~ih~~l~~~~~--~~~~~~~~~~dpl~---~va~ 134 (404) T Consensus 25 l~HA~Lf~Gp~G~GK~~~A~~~A~~llc~~~~~~~~~~~~-~~i~~g~HPD~~~i~~~~~~~~~k~k~~I~IdqiR~l~~ 103 (319) T PRK08769 25 LGHGLLICGPEGLGKRAVALALAEHVLASGPDPALAQRTR-QLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQ 103 (319) T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHH-HHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHH T ss_conf 4206875899987899999999999837997976543388-999668998968775344445431123486999999999 Q ss_pred H-----HHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEE Q ss_conf 9-----96138799984232047135888999999998549689981786867752387405668989999985050898 Q gi|254781047|r 135 S-----IALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIIS 209 (404) Q Consensus 135 ~-----l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~ 209 (404) T Consensus 104 ~~~~~p~~g~~KV~IId~Ad~mn~~AaNalLK~LEEP-p~~~~~iL~~~-~~~~l-------------l~TI~SRCq~~~ 168 (319) T PRK08769 104 KLALTPQYGIAQVVIVDPADAINRSACNALLKTLEEP-SPGRYLWLISA-QPARL-------------PATIRSRCQRLE 168 (319) T ss_pred HHHHCCCCCCCEEEEECCHHHCCHHHHHHHHHHHCCC-CCCEEEEEEEC-CHHHC-------------CHHHHHCCEEEC T ss_conf 9613720279569998066752899999999982279-98848999869-93658-------------247764850111 Q ss_pred CCCCCH Q ss_conf 047311 Q gi|254781047|r 210 LDSGQD 215 (404) Q Consensus 210 l~~~~D 215 (404) T Consensus 169 ~~~p~~ 174 (319) T PRK08769 169 FKLPPA 174 (319) T ss_pred CCCCCH T ss_conf 899699 |
|
| >COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.67 E-value=1.1 Score=24.38 Aligned_cols=129 Identities=17% Similarity=0.160 Sum_probs=71.5 Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH------HHHHHHHHHHHHC-CCCCCCCCCCCHHHHHHHHHH Q ss_conf 886499888887728999999998578111468889999------9999999999713-112246655780789999996 Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEF------MKDVHSRIIMYRK-KIEFGEILESDPIPLVASSIA 137 (404) Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~F------M~~ih~~l~~~~~-~~~~~~~~~~dpl~~va~~l~ 137 (404) T Consensus 163 s~a~VLI~GESGtGKElvAr~IH~~S~R~~~P---FVavNcaAip~~l~ESELFGhekGAFTGA~~~r~G~f-----E-~ 233 (464) T COG2204 163 SDASVLITGESGTGKELVARAIHQASPRAKGP---FIAVNCAAIPENLLESELFGHEKGAFTGAITRRIGRF-----E-Q 233 (464) T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCCCCCCC---CEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCE-----E-E T ss_conf 79978997789875899999998607445899---2563346489888777761456567677643457615-----7-7 Q ss_pred CCCCEEEEEEEEECCCHHHHHHHHHHHHHHHC-------------CCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHC Q ss_conf 13879998423204713588899999999854-------------96899817868677523874056689899999850 Q gi|254781047|r 138 LESRVLCFDEFMITNIADAIILSRLFAALFSH-------------GCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKK 204 (404) Q Consensus 138 ~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~-------------gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~ 204 (404) T Consensus 234 A~GGTLfLDEI~~mpl---~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL~~~v~~G~FReD-------LyyR 303 (464) T COG2204 234 ANGGTLFLDEIGEMPL---ELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDLEEEVAAGRFRED-------LYYR 303 (464) T ss_pred CCCCEEEEECCCCCCH---HHHHHHHHHHHCCEEEECCCCCEECEEEEEEEECCCCHHHHHHCCCCHHH-------HHHH T ss_conf 3796587323110999---99999999987070673588860000169996057789999881973788-------8865 Q ss_pred CEEEECCC Q ss_conf 50898047 Q gi|254781047|r 205 LEIISLDS 212 (404) Q Consensus 205 ~~V~~l~~ 212 (404) T Consensus 304 LnV~~i~i 311 (464) T COG2204 304 LNVVPLRL 311 (464) T ss_pred HCCCEECC T ss_conf 23311048 |
|
| >PRK05564 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=90.82 E-value=0.9 Score=24.95 Aligned_cols=121 Identities=16% Similarity=0.182 Sum_probs=74.2 Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH-----HCCC Q ss_conf 86499888887728999999998578111468889999999999999971311224665578078999999-----6138 Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSI-----ALES 140 (404) Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l-----~~~~ 140 (404) T Consensus 26 ~HAyLF~Gp~G~GK~~~A~~~A~~ll~~~~~~~~~-D--------~~~~~~~--~~~~I~vd~IR~l~~~~~~~p~~g~~ 94 (313) T PRK05564 26 SHASLIVGEDGIGKSILAKEIANKILGKSEQREYV-D--------IIEYKPI--NKKSIGVDDIRNIIEEVNKKPYEGDK 94 (313) T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCC-C--------EEEEECC--CCCCCCHHHHHHHHHHHHHCCCCCCC T ss_conf 75043279998509999999999982899778898-6--------5886332--25699989999999998408625895 Q ss_pred CEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCC Q ss_conf 799984232047135888999999998549689981786867752387405668989999985050898047 Q gi|254781047|r 141 RVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDS 212 (404) Q Consensus 141 ~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~ 212 (404) T Consensus 95 KV~II~~ae~m~~~AaNALLKtLEEPP~~t~fIL~t~~--~~~l-------------LpTI~SRCQ~~~f~~ 151 (313) T PRK05564 95 KVIIIYKSEKMTEQAQNAFLKTIEEPPKGVFIILLCEN--LEQI-------------LDTIKSRCQIYKLNR 151 (313) T ss_pred EEEEECCHHHHCHHHHHHHHHCCCCCCCCEEEEEEECC--HHHC-------------CCHHHCCCEEEECCC T ss_conf 69998077775899999984550368998589986498--3547-------------577870653566899 |
|
| >KOG0989 consensus | Back alignment and domain information |
|---|
Probab=90.53 E-value=0.99 Score=24.70 Aligned_cols=126 Identities=17% Similarity=0.207 Sum_probs=70.5 Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHH--HHCCCCCCCCCCCCHHHHHHHHHH------ Q ss_conf 49988888772899999999857811--14688899999999999999--713112246655780789999996------ Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPIE--KKCRLHFYEFMKDVHSRIIM--YRKKIEFGEILESDPIPLVASSIA------ 137 (404) Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~~--~K~R~HFh~FM~~ih~~l~~--~~~~~~~~~~~~~dpl~~va~~l~------ 137 (404) T Consensus 59 ~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl----------~lnaSderGis-----vvr~Kik~fakl~~~~~~~~ 123 (346) T KOG0989 59 HYLFYGPPGTGKTSTALAFARALNCEQLFPCRVL----------ELNASDERGIS-----VVREKIKNFAKLTVLLKRSD 123 (346) T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCHH----------HHCCCCCCCCC-----CHHHHHCCHHHHHHCCCCCC T ss_conf 0786689998676899999998557423555424----------31366001431-----00665237998750255656 Q ss_pred ----CCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCCC Q ss_conf ----1387999842320471358889999999985496899817868677523874056689899999850508980473 Q gi|254781047|r 138 ----LESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDSG 213 (404) Q Consensus 138 ----~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~~ 213 (404) T Consensus 124 ~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~-~s~~trFiLIcnyls-ri-------------i~pi~SRC~KfrFk~L 188 (346) T KOG0989 124 GYPCPPFKIIILDECDSMTSDAQAALRRTMED-FSRTTRFILICNYLS-RI-------------IRPLVSRCQKFRFKKL 188 (346) T ss_pred CCCCCCCEEEEEECHHHHHHHHHHHHHHHHHC-CCCCEEEEEECCCHH-HC-------------CHHHHHHHHHHCCCCC T ss_conf 78898632899741645309999999999862-546659999738856-47-------------7287746777128876 Q ss_pred CH----HHHCCCCC Q ss_conf 11----22112367 Q gi|254781047|r 214 QD----YRRKEQSI 223 (404) Q Consensus 214 ~D----YR~~~~~~ 223 (404) T Consensus 189 ~d~~iv~rL~~Ia~ 202 (346) T KOG0989 189 KDEDIVDRLEKIAS 202 (346) T ss_pred CHHHHHHHHHHHHH T ss_conf 44789999999988 |
|
| >PRK06090 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=90.32 E-value=0.42 Score=27.05 Aligned_cols=133 Identities=11% Similarity=0.111 Sum_probs=78.5 Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCHHH-----HH-HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH-- Q ss_conf 88649988888772899999999857811146-----88-89999999999999971311224665578078999999-- Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKKC-----RL-HFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSI-- 136 (404) Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~-----R~-HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l-- 136 (404) T Consensus 24 l~HA~L~~g~~G~Gk~~la~~la~~LlC~~~~~~~Cg~C~sC~l~~~g~HPD~~~i~pe~~~-k~I~vd~IR~l~~~~~~ 102 (319) T PRK06090 24 IPGALLLQSDEGLGVESLVELFSHALLCQNYQSEACGFCHSCELMKSGNHPDLHVIKPEKEG-KSITVEQIRQCNRLAQE 102 (319) T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCEEEECCCCC-CCCCHHHHHHHHHHHHH T ss_conf 63067667999857999999999998089999998877877999875899982366123356-76879999999999754 Q ss_pred ---HCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCCC Q ss_conf ---61387999842320471358889999999985496899817868677523874056689899999850508980473 Q gi|254781047|r 137 ---ALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDSG 213 (404) Q Consensus 137 ---~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~~ 213 (404) T Consensus 103 ~~~~g~~KV~iI~~ae~m~~~AaNALLKtLEEP-p~~t~fiL~t~~~-~~l-------------l~TI~SRCq~~~l~~p 167 (319) T PRK06090 103 SSQLGGYRLFVIEPADAMNESASNALLKTLEEP-APNCLFLLVTHNQ-KRL-------------LPTIVSRCQQWVVTPP 167 (319) T ss_pred CCCCCCCEEEEECCHHHCCHHHHHHHHHHHCCC-CCCEEEEEEECCH-HHC-------------CCCHHHCCCCCCCCCC T ss_conf 521069369998144434999999999984289-9883899876851-208-------------6418761445028995 |
|
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.9e-10 Score=85.20 Aligned_cols=104 Identities=20% Similarity=0.250 Sum_probs=78.7 Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCC----CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCE Q ss_conf 6499888887728999999998578----111468889999999999999971311224665578078999999613879 Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVP----IEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRV 142 (404) Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~----~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~l 142 (404) T Consensus 146 NPLfIyG~~GlGKTHLl~AIgn~~~~~~p~~~v~Y~tae~F~~~~v~al~---~----------~~~~~Fr~~y-r~~Dv 211 (447) T PRK00149 146 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVSSEKFTNDFVKALR---N----------NAMEEFKEKY-RSVDV 211 (447) T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHH---C----------CCHHHHHHHH-HCCCE T ss_conf 85589779988788999999999998589972899549999999999985---1----------8699999999-72885 Q ss_pred EEEEEEEECCCHHH--HHHHHHHHHHHHCCCEEEEECCCCHHHH Q ss_conf 99842320471358--8899999999854968998178686775 Q gi|254781047|r 143 LCFDEFMITNIADA--IILSRLFAALFSHGCIIVMTSNFIPENL 184 (404) Q Consensus 143 LCfDEF~V~DiaDA--mil~rl~~~lf~~gv~lV~TSN~~P~dL 184 (404) T Consensus 212 LliDDiqfl~gk~~tqeeff~~fn~l~~~~kqiv~tsd~~P~~l 255 (447) T PRK00149 212 LLIDDIQFLAGKEKTQEEFFHTFNALHENNKQIVITSDRPPKEL 255 (447) T ss_pred EEECHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHC T ss_conf 43214888605577999999999999984996899578896765 |
|
| >PRK12422 chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=9.5e-10 Score=81.96 Aligned_cols=103 Identities=22% Similarity=0.323 Sum_probs=78.3 Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHH---HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEE Q ss_conf 6499888887728999999998578111468889---9999999999999713112246655780789999996138799 Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHF---YEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVL 143 (404) Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HF---h~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lL 143 (404) T Consensus 142 NPLfIyG~~GlGKTHLL~AIgn~i~~~~-~kV~Yvtae~F~~~~v~ai~---~----------~~~~~Fr~~y-r~~DvL 206 (455) T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVSALRESG-GKILYVSSELFTEHLVSAIR---S----------GEMQRFRSFY-RNVDAL 206 (455) T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHCCC-CEEEEECHHHHHHHHHHHHH---C----------CCHHHHHHHH-HCCCEE T ss_conf 8758878999978999999999853799-86999749999999999997---5----------8899999999-638877 Q ss_pred EEEEEEECC--CHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH Q ss_conf 984232047--13588899999999854968998178686775 Q gi|254781047|r 144 CFDEFMITN--IADAIILSRLFAALFSHGCIIVMTSNFIPENL 184 (404) Q Consensus 144 CfDEF~V~D--iaDAmil~rl~~~lf~~gv~lV~TSN~~P~dL 184 (404) T Consensus 207 LIDDIQfl~gK~~tqeEff~tfN~L~~~~KQIVitsDr~P~el 249 (455) T PRK12422 207 FIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSSYAPGDL 249 (455) T ss_pred EEEHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH T ss_conf 6314788728488999999999999985996999689895765 |
|
| >pfam00308 Bac_DnaA Bacterial dnaA protein | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.6e-09 Score=77.57 Aligned_cols=104 Identities=23% Similarity=0.300 Sum_probs=68.7 Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCC-HHHH---HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCE Q ss_conf 649988888772899999999857811-1468---889999999999999971311224665578078999999613879 Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPIE-KKCR---LHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRV 142 (404) Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~~-~K~R---~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~l 142 (404) T Consensus 35 npl~i~G~~G~GKTHLLqA~~~~~~~~~~~~~v~yl~~~~~~~~~~~~l---~~----------~~~~~f~~-~l~~~d~ 100 (219) T pfam00308 35 NPLFIYGGVGLGKTHLLHAIGNYALRNFPNLRVVYLTSEEFLNDFVDAL---RD----------NKIEAFKK-SYRNVDL 100 (219) T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHH---HC----------CCHHHHHH-HHHHCCH T ss_conf 8269988999988899999999999849998288843999999889999---81----------88889999-9763233 Q ss_pred EEEEEEEEC--CCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH Q ss_conf 998423204--713588899999999854968998178686775 Q gi|254781047|r 143 LCFDEFMIT--NIADAIILSRLFAALFSHGCIIVMTSNFIPENL 184 (404) Q Consensus 143 LCfDEF~V~--DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dL 184 (404) T Consensus 101 l~iDDi~~l~~~~~~ee~lf~l~N~~~~~~~~lllts~~~p~~l 144 (219) T pfam00308 101 LLIDDIQFLAGKEKTQEEFFHTFNALHENNKQIVLTSDRPPKEL 144 (219) T ss_pred HHHCCHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCC T ss_conf 65223676568647899999999999972986999779981002 |
|
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.6e-09 Score=77.57 Aligned_cols=97 Identities=19% Similarity=0.228 Sum_probs=65.1 Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEE Q ss_conf 64998888877289999999985781114688899999999999999713112246655780789999996138799984 Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCFD 146 (404) Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCfD 146 (404) T Consensus 46 ~~l~i~G~~G~GKTHLL~A~~~~~~~~~-~~~~yl~~-~~~~~~~-----------------~~--~~~~l~~~d~l~ID 104 (234) T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRG-EPAVYLPL-AELLDRG-----------------PE--LLDNLEQYELVCID 104 (234) T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCC-CCEEEEEH-HHHHHHH-----------------HH--HHHHHHHCCEEEEE T ss_conf 8389988999988999999999998079-96799789-9987544-----------------99--98624227989893 Q ss_pred EEEEC--CCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH Q ss_conf 23204--713588899999999854968998178686775 Q gi|254781047|r 147 EFMIT--NIADAIILSRLFAALFSHGCIIVMTSNFIPENL 184 (404) Q Consensus 147 EF~V~--DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dL 184 (404) T Consensus 105 Di~~i~g~~~~e~~lF~l~N~~~~~~~~llits~~~P~~l 144 (234) T PRK05642 105 DLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPREL 144 (234) T ss_pred CHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH T ss_conf 6455468859999999999999983995999578795552 |
|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.7e-09 Score=77.01 Aligned_cols=90 Identities=20% Similarity=0.328 Sum_probs=63.2 Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHH------HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC Q ss_conf 49988888772899999999857811146888999------999999999997131122466557807899999961387 Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYE------FMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESR 141 (404) Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~------FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~ 141 (404) T Consensus 47 ~l~l~G~~G~GKTHLLqA~~~~~~~~~-~~~~yl~~~~~~~~~~~~l--------------------------~~l~~~d 99 (235) T PRK08084 47 YIYLWGREGAGRSHLLHAACAELSQRG-DAVGYVPLDKRAWFVPEVL--------------------------EGMEQLS 99 (235) T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCC-CCEEEEEHHHHHHHHHHHH--------------------------HHHHHCC T ss_conf 699989999888999999999997079-8579987798665179999--------------------------8764189 Q ss_pred EEEEEEEEEC--CCHHHHHHHHHHHHHHHCC-CEEEEECCCCHHHH Q ss_conf 9998423204--7135888999999998549-68998178686775 Q gi|254781047|r 142 VLCFDEFMIT--NIADAIILSRLFAALFSHG-CIIVMTSNFIPENL 184 (404) Q Consensus 142 lLCfDEF~V~--DiaDAmil~rl~~~lf~~g-v~lV~TSN~~P~dL 184 (404) T Consensus 100 ll~iDDi~~i~g~~~~ee~lF~l~N~~~~~g~~~ll~ts~~~P~~l 145 (235) T PRK08084 100 LVCIDNIECIAGDELWEMAIFDLYNRILESGKTRLLITGDRPPRQL 145 (235) T ss_pred EEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHC T ss_conf 8998274554699789999999999999848966999679882430 |
|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.1e-08 Score=75.19 Aligned_cols=94 Identities=18% Similarity=0.224 Sum_probs=65.7 Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHH---HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEE Q ss_conf 6499888887728999999998578111468889---9999999999999713112246655780789999996138799 Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHF---YEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVL 143 (404) Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HF---h~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lL 143 (404) T Consensus 39 ~~l~i~G~~GsGKTHLl~a~~~~~~~~~-~~~~yl~~~~~~~~~~~~-----------------------l~~l~~~d~l 94 (226) T TIGR03420 39 RFLYLWGESGSGKSHLLQAACAAAEERG-KSAIYLPLAELAQADPEV-----------------------LEGLEQADLV 94 (226) T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHCCC-CCEEEECHHHHHHHHHHH-----------------------HHHCCCCCEE T ss_conf 8699989999988999999999986269-957995299987753999-----------------------9727448999 Q ss_pred EEEEEEECC--CHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH Q ss_conf 984232047--13588899999999854968998178686775 Q gi|254781047|r 144 CFDEFMITN--IADAIILSRLFAALFSHGCIIVMTSNFIPENL 184 (404) Q Consensus 144 CfDEF~V~D--iaDAmil~rl~~~lf~~gv~lV~TSN~~P~dL 184 (404) T Consensus 95 ~iDDi~~i~~~~~~e~~lF~l~N~~~~~~~~ilits~~~p~~l 137 (226) T TIGR03420 95 CLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQL 137 (226) T ss_pred EEECHHHHCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHC T ss_conf 9966333437837899999999999865282898678882320 |
Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. |
| >PRK08903 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.6e-08 Score=74.24 Aligned_cols=92 Identities=23% Similarity=0.340 Sum_probs=62.8 Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEE Q ss_conf 49988888772899999999857811146888999999999999997131122466557807899999961387999842 Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCFDE 147 (404) Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCfDE 147 (404) T Consensus 44 ~l~i~G~~G~GKTHLl~a~~~~~~~~~-~~~~yl~~---------------------~~-~~~--~~~~~~~~d~l~iDD 98 (227) T PRK08903 44 FFYLWGEAGSGRSHLLQALVAAASEGG-KNARYLDP---------------------AS-PLL--AFDFDPRAELYAVDD 98 (227) T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC-CCEEEECC---------------------CC-CHH--HHHHHHCCCEEEEEC T ss_conf 699989999988899999999998069-97499651---------------------10-457--774200189899964 Q ss_pred EEECCCHHHHHHHHHHHHHHHCC-CEEEEECCCCHHHH Q ss_conf 32047135888999999998549-68998178686775 Q gi|254781047|r 148 FMITNIADAIILSRLFAALFSHG-CIIVMTSNFIPENL 184 (404) Q Consensus 148 F~V~DiaDAmil~rl~~~lf~~g-v~lV~TSN~~P~dL 184 (404) T Consensus 99 i~~i~~~~q~~lF~l~N~~~~~~~~~ll~s~~~~p~~l 136 (227) T PRK08903 99 VERLDDAQQIALFNLFNRVRAHGKTALLVAGPAAPLAL 136 (227) T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHC T ss_conf 11489569999999999999729948997189971201 |
|
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.2e-07 Score=68.59 Aligned_cols=97 Identities=18% Similarity=0.251 Sum_probs=64.7 Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEE Q ss_conf 64998888877289999999985781114688899999999999999713112246655780789999996138799984 Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCFD 146 (404) Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCfD 146 (404) T Consensus 42 ~~lyl~G~~GsGKTHLl~a~~~~~~~~~-~~~~yl~l-~~~~~~--------------~~~~l-----~~le~~~ll~iD 100 (233) T PRK08727 42 DWLYLSGPAGTGKTHLALSLCAAAEQAG-RSSAYLPL-QAAAGR--------------LRDAL-----EALEGRSLVALD 100 (233) T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCC-CCEEEEEH-HHHHHH--------------HHHHH-----HHHCCCCEEEEE T ss_conf 9899989999988999999999998279-97288447-885320--------------25677-----531038978985 Q ss_pred EEEEC--CCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH Q ss_conf 23204--713588899999999854968998178686775 Q gi|254781047|r 147 EFMIT--NIADAIILSRLFAALFSHGCIIVMTSNFIPENL 184 (404) Q Consensus 147 EF~V~--DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dL 184 (404) T Consensus 101 Did~i~g~~~~e~aLFhL~N~~~~~~~~ll~ts~~~P~~l 140 (233) T PRK08727 101 GVDSIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGL 140 (233) T ss_pred CCHHCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH T ss_conf 5011269827999999999999861983899779895662 |
|
| >PRK03992 proteasome-activating nucleotidase; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.6e-07 Score=67.88 Aligned_cols=106 Identities=19% Similarity=0.180 Sum_probs=55.6 Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEE Q ss_conf 68864998888877289999999985781114688899999999999999713112246655780789999996138799 Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVL 143 (404) Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lL 143 (404) T Consensus 164 ~pPkGvLLyGPPGtGKTllAkAvA~e~~~~f-i~v~~s~l~s-------k~vGese---k~vr-~lF~~Ar~~--aP~Ii 229 (390) T PRK03992 164 EPPKGVLLYGPPGTGKTLLAKAVAHETNATF-IRVVGSELVQ-------KFIGEGA---RLVR-ELFELAREK--APSII 229 (390) T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCE-EEEEHHHHHH-------CCCCHHH---HHHH-HHHHHHHHH--CCCEE T ss_conf 9997278689899978999999998748887-9966799752-------4541799---9999-999999970--99089 Q ss_pred EEEEEEEC--------CCHHHHH---HHHHHHHHH----HCCCEEEEECCCCHHHH Q ss_conf 98423204--------7135888---999999998----54968998178686775 Q gi|254781047|r 144 CFDEFMIT--------NIADAII---LSRLFAALF----SHGCIIVMTSNFIPENL 184 (404) Q Consensus 144 CfDEF~V~--------DiaDAmi---l~rl~~~lf----~~gv~lV~TSN~~P~dL 184 (404) T Consensus 230 FiDEiDai~~~R~~~~~~g~~ev~r~l~qLL~emDG~~~~~~V~VIaATNrp-d~L 284 (390) T PRK03992 230 FIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRP-DIL 284 (390) T ss_pred EHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCC-HHC T ss_conf 7143256633567788862088999999999974487777882799606981-005 |
|
| >CHL00195 ycf46 Ycf46; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=7.6e-08 Score=69.86 Aligned_cols=104 Identities=20% Similarity=0.186 Sum_probs=64.6 Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCE Q ss_conf 66886499888887728999999998578111468889999999999999971311224665578078999999613879 Q gi|254781047|r 63 YCSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRV 142 (404) Q Consensus 63 ~~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~l 142 (404) T Consensus 256 l~~PkGvLL~GpPG~GKtl~AKAvA~e~~~p~-l~l~~~~l~~~-------~vGes---E~~~r-~~f~~A~~~aP--~i 321 (491) T CHL00195 256 LPTPRGLLLVGIQGTGKSLTAKAIANEWNLPL-LRLDVGKLFGG-------IVGES---ESRMR-QMIQLAETISP--CI 321 (491) T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCE-EEEEHHHHHHH-------HCCHH---HHHHH-HHHHHHHHHCC--EE T ss_conf 99998799979999878999999986638946-99667997560-------06704---99999-99999986198--58 Q ss_pred EEEEEEE-E--------CCCHHHHHHHHHHHHHHHC--CCEEEEECCCC Q ss_conf 9984232-0--------4713588899999999854--96899817868 Q gi|254781047|r 143 LCFDEFM-I--------TNIADAIILSRLFAALFSH--GCIIVMTSNFI 180 (404) Q Consensus 143 LCfDEF~-V--------~DiaDAmil~rl~~~lf~~--gv~lV~TSN~~ 180 (404) T Consensus 322 lfiDEidk~~~~~~~~~d~g~s~rv~~~~Lt~m~e~~~~VfViattN~~ 370 (491) T CHL00195 322 LWIDEIDKAFSGLDSKGDSGTSNRVLATFITWLSEKKSPVFVVATANNI 370 (491) T ss_pred EEEEHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCC T ss_conf 9974654542588888887232899999999864689976999958997 |
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.2e-07 Score=65.88 Aligned_cols=108 Identities=15% Similarity=0.056 Sum_probs=64.0 Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCH--HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCE Q ss_conf 886499888887728999999998578111--468889999999999999971311224665578078999999613879 Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEK--KCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRV 142 (404) Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~--K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~l 142 (404) T Consensus 18 ~~~~ill~GppGtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~v 87 (151) T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF----------LVRLLFELAEKAKPGV 87 (151) T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEHHHCCHHHHHHHHHHHH----------HHHHHHHHHHHCCCCE T ss_conf 998089989999886599999999712137982785477704677775760577----------8898999999769986 Q ss_pred EEEEEEEECCCHHHHHHHHHHHHHHH-----CCCEEEEECCCCHH Q ss_conf 99842320471358889999999985-----49689981786867 Q gi|254781047|r 143 LCFDEFMITNIADAIILSRLFAALFS-----HGCIIVMTSNFIPE 182 (404) Q Consensus 143 LCfDEF~V~DiaDAmil~rl~~~lf~-----~gv~lV~TSN~~P~ 182 (404) T Consensus 88 l~iDEi~~l~~~~~~~~~~~l~~~~~~~~~~~~~~vI~~tn~~~~ 132 (151) T cd00009 88 LFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLL 132 (151) T ss_pred EEEECHHHCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCC T ss_conf 982016655999999999999871575406788899995289988 |
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >PRK09087 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.5e-06 Score=59.30 Aligned_cols=88 Identities=22% Similarity=0.253 Sum_probs=56.4 Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEE Q ss_conf 86499888887728999999998578111468889999999999999971311224665578078999999613879998 Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCF 145 (404) Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCf 145 (404) T Consensus 44 ~~~~~L~Gp~gsGKTHL~~~~~~~~~a~---~~~~~~~~~-------------------------~~~-~-~~~~~~~~i 93 (226) T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKADAL---LVHPNEIGS-------------------------DAA-N-AAAERPVLI 93 (226) T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCE---EECHHHCCH-------------------------HHH-H-HHCCCCEEE T ss_conf 7758998999998869999999980996---836687474-------------------------667-6-532798899 Q ss_pred EEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH Q ss_conf 423204713588899999999854968998178686775 Q gi|254781047|r 146 DEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENL 184 (404) Q Consensus 146 DEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dL 184 (404) T Consensus 94 dd~d~~~~dEe~-LFhl~N~~~~~~~~LLlts~~~p~~l 131 (226) T PRK09087 94 EDIDAGGFDETG-LFHLINSVRQAGTSLLMTSRLWPSAW 131 (226) T ss_pred ECCCCCCCCHHH-HHHHHHHHHHCCCEEEEECCCCHHHC T ss_conf 748777747899-99999999853987999889895666 |
|
| >PRK06620 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.3e-06 Score=59.45 Aligned_cols=84 Identities=15% Similarity=0.239 Sum_probs=59.6 Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEE Q ss_conf 86499888887728999999998578111468889999999999999971311224665578078999999613879998 Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCF 145 (404) Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCf 145 (404) T Consensus 44 ~~~l~I~Gp~gSGKTHL~~i~~~~~~a-~~--~----------------------------~~~~-~~~~~~~~~~~~ii 91 (214) T PRK06620 44 KFTLLIKGPSSSGKTYLTKIWQNLSNA-YI--I----------------------------KDIF-FNEEILEKYNAFII 91 (214) T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCC-EE--E----------------------------CHHH-CCHHHHHHCCCEEE T ss_conf 555999879999889999999998285-88--1----------------------------5121-45878843793798 Q ss_pred EEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH Q ss_conf 423204713588899999999854968998178686775 Q gi|254781047|r 146 DEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENL 184 (404) Q Consensus 146 DEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dL 184 (404) T Consensus 92 ddid--~~~e~~lfh-lfN~~~~~~~~llits~~~p~~~ 127 (214) T PRK06620 92 EDIE--NWQEPALLH-IFNIINEKQKYLLLTSSDKSRNF 127 (214) T ss_pred ECCC--CCCHHHHHH-HHHHHHHCCCEEEEEECCCCCCC T ss_conf 4677--574679999-99999715987999827985224 |
|
| >pfam07728 AAA_5 AAA domain (dynein-related subfamily) | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.6e-06 Score=60.10 Aligned_cols=91 Identities=21% Similarity=0.191 Sum_probs=50.9 Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEE Q ss_conf 49988888772899999999857811146888999999999999997131122466557807899999961387999842 Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCFDE 147 (404) Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCfDE 147 (404) T Consensus 1 ~vll~Gp~G~GKT~la~~la~~l~~~~~~~i~~~~~~~~~--dl~G~~~~~~~~~~~~~g~l~~a----~~~g~vl~lDE 74 (139) T pfam07728 1 GVLLVGPPGTGKSELAERLAAALSNRPVFYVQLTRDTTEE--DLKGRRNIANGTTSWVDGPLVRA----AREGEIAVLDE 74 (139) T ss_pred CEEEECCCCCHHHHHHHHHHHHCCCCCCHHHCCCCCCCHH--HCCCCEECCCCCEEEECCHHHCC----CCCCCEEEECC T ss_conf 9899989975699999999998079831112146556522--20573423799357815514101----01286899634 Q ss_pred EEECCCHHHHHHHHHHHHHH Q ss_conf 32047135888999999998 Q gi|254781047|r 148 FMITNIADAIILSRLFAALF 167 (404) Q Consensus 148 F~V~DiaDAmil~rl~~~lf 167 (404) T Consensus 75 in~a~---~~v~~~L~~~le 91 (139) T pfam07728 75 INRAN---PDVLNSLLSLLD 91 (139) T ss_pred HHHCC---HHHHHHHHHHHC T ss_conf 34489---999999999974 |
This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model. |
| >pfam00004 AAA ATPase family associated with various cellular activities (AAA) | Back alignment and domain information |
|---|
Probab=97.96 E-value=1e-05 Score=56.35 Aligned_cols=101 Identities=17% Similarity=0.207 Sum_probs=49.8 Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCC-CCEEEEEE Q ss_conf 99888887728999999998578111468889999999999999971311224665578078999999613-87999842 Q gi|254781047|r 69 IYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALE-SRVLCFDE 147 (404) Q Consensus 69 lYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~-~~lLCfDE 147 (404) T Consensus 1 iLl~GppGtGKT~~a~~la~~~~------~~~--~~v~~~~~~~~~~g~-------~~~~i~~~f~~a~~~~p~Il~iDe 65 (131) T pfam00004 1 LLLYGPPGTGKTTLAKAVAKELG------APF--IEISGSELVSKYVGE-------SEKRLRELFEAAKKLAPCVIFIDE 65 (131) T ss_pred CEEECCCCCCHHHHHHHHHHHHC------CCC--EECCCCCCCCCCCCH-------HHHHHHHHHHHHHHCCCCEEEECH T ss_conf 98789999999999999999978------985--332420122233450-------688899999999974991898311 Q ss_pred EEEC--C------CHHHHHHHHHHHHH---H--HCCCEEEEECCCCHHHHH Q ss_conf 3204--7------13588899999999---8--549689981786867752 Q gi|254781047|r 148 FMIT--N------IADAIILSRLFAAL---F--SHGCIIVMTSNFIPENLY 185 (404) Q Consensus 148 F~V~--D------iaDAmil~rl~~~l---f--~~gv~lV~TSN~~P~dLY 185 (404) T Consensus 66 ~d~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~~I~tTN~-~~~ld 115 (131) T pfam00004 66 IDALAGSRGSGGDSESRRVVNQLLTELDGFTSSLSKVIVIAATNR-PDKLD 115 (131) T ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCC-HHHCC T ss_conf 677751678888875132687899998502246887699997599-04499 |
AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes. |
| >COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.84 E-value=3.6e-05 Score=52.91 Aligned_cols=106 Identities=16% Similarity=0.230 Sum_probs=59.8 Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCE Q ss_conf 66886499888887728999999998578111468889999999999999971311224665578078999999613879 Q gi|254781047|r 63 YCSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRV 142 (404) Q Consensus 63 ~~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~l 142 (404) T Consensus 273 ~~~~~giLl~GpPGtGKT~lAkava~~~~------~~fi~v~~~--~l~sk~vGes------ek~ir~~F~~A~~~~p~i 338 (494) T COG0464 273 LRPPKGVLLYGPPGTGKTLLAKAVALESR------SRFISVKGS--ELLSKWVGES------EKNIRELFEKARKLAPSI 338 (494) T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCC------CCEEEECCH--HHHHHHHHHH------HHHHHHHHHHHHHCCCCE T ss_conf 98883699988999758999999875449------824884335--5540776599------999999999999669988 Q ss_pred EEEEEEEE-----C-CCH--HHHHHHHHHHHHH----HCCCEEEEECCCCHH Q ss_conf 99842320-----4-713--5888999999998----549689981786867 Q gi|254781047|r 143 LCFDEFMI-----T-NIA--DAIILSRLFAALF----SHGCIIVMTSNFIPE 182 (404) Q Consensus 143 LCfDEF~V-----~-Dia--DAmil~rl~~~lf----~~gv~lV~TSN~~P~ 182 (404) T Consensus 339 ifiDEiDs~~~~r~~~~~~~~~rv~~~ll~~~d~~e~~~~v~vi~aTN~p~~ 390 (494) T COG0464 339 IFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDD 390 (494) T ss_pred EEHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCC T ss_conf 9748866674128998763799999999999747544376489964798332 |
|
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00013 Score=49.32 Aligned_cols=113 Identities=12% Similarity=0.134 Sum_probs=61.1 Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCH-HHH-H--------HHHHHHHHHHHHHHHHHCCCC-CCCCCCCCHHHHHH Q ss_conf 886499888887728999999998578111-468-8--------899999999999999713112-24665578078999 Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEK-KCR-L--------HFYEFMKDVHSRIIMYRKKIE-FGEILESDPIPLVA 133 (404) Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~-K~R-~--------HFh~FM~~ih~~l~~~~~~~~-~~~~~~~dpl~~va 133 (404) T Consensus 54 ~~~n~~I~G~pGTGKT~~vk~v~~~l~~~~~~~~~vyINc~~~~t~~~i~~~i~~~L---~~~~~p~~G~s~~~~~~~l~ 130 (394) T PRK00411 54 RPSNVLILGPPGTGKTTTVKKVFEELEEAALKVVYVYINCQIDRTRYAILSEIARSL---FGHPPPSSGLSFDELFDKIA 130 (394) T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHH---CCCCCCCCCCCHHHHHHHHH T ss_conf 998479988999989999999999999746896599996966898999999999995---69989877878999999999 Q ss_pred HHHHCCC--CEEEEEEEEE-CCCHHHHHHHHHHHH---HHHCCCEEEEECCCC Q ss_conf 9996138--7999842320-471358889999999---985496899817868 Q gi|254781047|r 134 SSIALES--RVLCFDEFMI-TNIADAIILSRLFAA---LFSHGCIIVMTSNFI 180 (404) Q Consensus 134 ~~l~~~~--~lLCfDEF~V-~DiaDAmil~rl~~~---lf~~gv~lV~TSN~~ 180 (404) T Consensus 131 ~~l~~~~~~~ivvLDEiD~L~~~~~~~vLY~L~r~~~~~~~~~~~vI~IsN~~ 183 (394) T PRK00411 131 EYLDERDRVLIVALDDINYLVEKEGNDVLYSLLRAHEEYPGARIGVIGISSDL 183 (394) T ss_pred HHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEEECCC T ss_conf 98616697589999655402036650899999854022688738999997687 |
|
| >KOG0730 consensus | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00011 Score=49.74 Aligned_cols=99 Identities=20% Similarity=0.274 Sum_probs=53.7 Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH---HHHH Q ss_conf 6688649988888772899999999857811---146888999999999999997131122466557807899---9999 Q gi|254781047|r 63 YCSMQGIYLHGDVGQGKSMLMNLFFALVPIE---KKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLV---ASSI 136 (404) Q Consensus 63 ~~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~---~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~v---a~~l 136 (404) T Consensus 465 i~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgp--------EL---~sk~vGeS-------Er~ir~iF~kAR~~ 526 (693) T KOG0730 465 ISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGP--------EL---FSKYVGES-------ERAIREVFRKARQV 526 (693) T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEECCCH--------HH---HHHHCCCH-------HHHHHHHHHHHHHC T ss_conf 78875477778998624789999864635872641578--------99---87751825-------89999999998626 Q ss_pred HCCCCEEEEEEEEECCCH--------HHHHHHHHHHHH----HHCCCEEEEECCCCH Q ss_conf 613879998423204713--------588899999999----854968998178686 Q gi|254781047|r 137 ALESRVLCFDEFMITNIA--------DAIILSRLFAAL----FSHGCIIVMTSNFIP 181 (404) Q Consensus 137 ~~~~~lLCfDEF~V~Dia--------DAmil~rl~~~l----f~~gv~lV~TSN~~P 181 (404) T Consensus 527 aP--~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd 581 (693) T KOG0730 527 AP--CIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPD 581 (693) T ss_pred CC--EEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHH T ss_conf 98--37744666666630478755148999999998700410147089995058810 |
|
| >pfam07726 AAA_3 ATPase family associated with various cellular activities (AAA) | Back alignment and domain information |
|---|
Probab=97.71 E-value=1e-05 Score=56.38 Aligned_cols=92 Identities=22% Similarity=0.210 Sum_probs=52.8 Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCC----C-CCCCCCCCHHHHHHHHHHCCCCEE Q ss_conf 99888887728999999998578111468889999999999999971311----2-246655780789999996138799 Q gi|254781047|r 69 IYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKI----E-FGEILESDPIPLVASSIALESRVL 143 (404) Q Consensus 69 lYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~----~-~~~~~~~dpl~~va~~l~~~~~lL 143 (404) T Consensus 2 VLL~GppG~GKT~l~~~lA~~~~~~-~~~i~~~~~~~~--~D---l~G~~~~~~~~~~~~~~~G~l~---------~~vl 66 (131) T pfam07726 2 VLLEGVPGLAKTLLARTLARSLGLD-FRRIQFTPDLLP--SD---ITGTEVYDQKTREFEFRPGPIF---------ANVL 66 (131) T ss_pred EEEECCCCCHHHHHHHHHHHHHCCC-CEEEEECCCCCC--CC---CCCCEEECCCCCEEEEECCCCC---------CCCE T ss_conf 8789899876999999999995998-168883377670--00---3684542378740898457310---------3705 Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHCC-------------CEEEEECC Q ss_conf 984232047135888999999998549-------------68998178 Q gi|254781047|r 144 CFDEFMITNIADAIILSRLFAALFSHG-------------CIIVMTSN 178 (404) Q Consensus 144 CfDEF~V~DiaDAmil~rl~~~lf~~g-------------v~lV~TSN 178 (404) T Consensus 67 ~lDEin~---a~~~v~~~Ll~~l~er~v~~~g~~~~~p~~f~viAt~N 111 (131) T pfam07726 67 LADEINR---APPKTQSALLEAMQERQVTIGGETHPLPEPFFVLATQN 111 (131) T ss_pred EEEHHHC---CCHHHHHHHHHHHHCEEEEECCEEEECCCCEEEEECCC T ss_conf 6401203---99899999997632649977998852799849997169 |
This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model. |
| >COG0714 MoxR-like ATPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.59 E-value=7.2e-05 Score=50.97 Aligned_cols=102 Identities=18% Similarity=0.120 Sum_probs=67.8 Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH--HH-HHHCCCCCCCCCCCCHHHHHHHHHHCCCCEE Q ss_conf 64998888877289999999985781114688899999999999--99-9713112246655780789999996138799 Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSR--II-MYRKKIEFGEILESDPIPLVASSIALESRVL 143 (404) Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~--l~-~~~~~~~~~~~~~~dpl~~va~~l~~~~~lL 143 (404) T Consensus 44 ~~vll~G~PG~gKT~la~~lA~~l~~-~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~------~il 116 (329) T COG0714 44 GHVLLEGPPGVGKTLLARALARALGL-PFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR------VIL 116 (329) T ss_pred CCEEEECCCCCCHHHHHHHHHHHHCC-CCEEEECCCCCCHHHHCCHHHHHHHHCCCCEEEEECCCCCCCCC------EEE T ss_conf 97787798987779999999998389-81899568998888820568887664257718984687334513------389 Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHH--------------CCCEEEEECC Q ss_conf 9842320471358889999999985--------------4968998178 Q gi|254781047|r 144 CFDEFMITNIADAIILSRLFAALFS--------------HGCIIVMTSN 178 (404) Q Consensus 144 CfDEF~V~DiaDAmil~rl~~~lf~--------------~gv~lV~TSN 178 (404) T Consensus 117 l~DEIn---ra~p~~q~aLl~~l~e~~vt~~~~~~~~~~~~f~viaT~N 162 (329) T COG0714 117 LLDEIN---RAPPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQN 162 (329) T ss_pred EEECCC---CCCHHHHHHHHHHHHHCEEEECCCCCCCCCCCCEEEEECC T ss_conf 987034---5898899999999972689707966533799878998268 |
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00025 Score=47.57 Aligned_cols=113 Identities=15% Similarity=0.011 Sum_probs=58.1 Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH--HCCCCCCCCCCCCHHHHHHHHHHCCC--C Q ss_conf 8649988888772899999999857811146888999999999999997--13112246655780789999996138--7 Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMY--RKKIEFGEILESDPIPLVASSIALES--R 141 (404) Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~--~~~~~~~~~~~~dpl~~va~~l~~~~--~ 141 (404) T Consensus 2 ~~~ill~G~~GsGKTtl~~~la~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (148) T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG-GGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPD 80 (148) T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHCCCC-CCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCC T ss_conf 97899999997029999999998726689-96899875998988898765300011221051999999999999844998 Q ss_pred EEEEEEEEECCCHHHHHHHHH-------HHHHHHCCCEEEEECCC Q ss_conf 999842320471358889999-------99998549689981786 Q gi|254781047|r 142 VLCFDEFMITNIADAIILSRL-------FAALFSHGCIIVMTSNF 179 (404) Q Consensus 142 lLCfDEF~V~DiaDAmil~rl-------~~~lf~~gv~lV~TSN~ 179 (404) T Consensus 81 viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~n~ 125 (148) T smart00382 81 VLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148) T ss_pred EEEEECCHHHCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECC T ss_conf 999827502147620799999999998517657899899995699 |
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >pfam00910 RNA_helicase RNA helicase | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00025 Score=47.55 Aligned_cols=85 Identities=29% Similarity=0.347 Sum_probs=51.0 Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCC----HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEE Q ss_conf 9988888772899999999857811----146888999999999999997131122466557807899999961387999 Q gi|254781047|r 69 IYLHGDVGQGKSMLMNLFFALVPIE----KKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLC 144 (404) Q Consensus 69 lYL~G~VG~GKT~LMdlFy~~l~~~----~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLC 144 (404) T Consensus 1 i~l~G~~G~GKS~~a~~la~~~~~~~~~~~~~~~-------------------------Y~~~~~~~~wdgY~-gq~vvi 54 (105) T pfam00910 1 IWLYGPPGCGKSTLAKYLARALLDHLGLPKKDSV-------------------------YSRNPDDDFWDGYT-GQPVVI 54 (105) T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCE-------------------------EECCCCCCCCCCCC-CCEEEE T ss_conf 9897999898899999999999998377878977-------------------------96788776567889-985799 Q ss_pred EEEE-EECCCH-HHHHHHHHHH---------HHHHCC-----CEEEEECCC Q ss_conf 8423-204713-5888999999---------998549-----689981786 Q gi|254781047|r 145 FDEF-MITNIA-DAIILSRLFA---------ALFSHG-----CIIVMTSNF 179 (404) Q Consensus 145 fDEF-~V~Dia-DAmil~rl~~---------~lf~~g-----v~lV~TSN~ 179 (404) T Consensus 55 ~DD~~~~~~~~~~~~~~~~lvs~~p~~~~ma~le~Kg~~f~s~~vi~tsN~ 105 (105) T pfam00910 55 IDDFGQNPDGPSDEAELIRLVSSTPYPPPMAALEEKGTPFTSKFVIVTSNF 105 (105) T ss_pred EECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCEEEEECCC T ss_conf 965777888628899999875699838886676148884468889994799 |
This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses. |
| >KOG0732 consensus | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00047 Score=45.82 Aligned_cols=112 Identities=19% Similarity=0.270 Sum_probs=71.2 Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC Q ss_conf 66688649988888772899999999857811146888999999999999997131122466557807899999961387 Q gi|254781047|r 62 KYCSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESR 141 (404) Q Consensus 62 ~~~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~ 141 (404) T Consensus 295 ~itpPrgvL~~GppGTGkTl~araLa~~~s~~~-~kisf--fmrkgaD~lskwvgEaERq----lrllFeeA--~k~qPS 365 (1080) T KOG0732 295 NITPPRGVLFHGPPGTGKTLMARALAAACSRGN-RKISF--FMRKGADCLSKWVGEAERQ----LRLLFEEA--QKTQPS 365 (1080) T ss_pred CCCCCCCEEECCCCCCCHHHHHHHHHHHHCCCC-CCCCH--HHHCCCHHHCCCCCCHHHH----HHHHHHHH--HCCCCE T ss_conf 668986323028998725688886665405411-02024--4314844332544757788----99889887--444851 Q ss_pred EEEEEEEE----EC----CCHHHHHHHHHHHHHHH---C-CCEEEEECCCCHH Q ss_conf 99984232----04----71358889999999985---4-9689981786867 Q gi|254781047|r 142 VLCFDEFM----IT----NIADAIILSRLFAALFS---H-GCIIVMTSNFIPE 182 (404) Q Consensus 142 lLCfDEF~----V~----DiaDAmil~rl~~~lf~---~-gv~lV~TSN~~P~ 182 (404) T Consensus 366 IIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpda 418 (1080) T KOG0732 366 IIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPDA 418 (1080) T ss_pred EEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCC T ss_conf 77305556646565366777445677778876047777786589715678332 |
|
| >KOG0742 consensus | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0062 Score=38.70 Aligned_cols=94 Identities=24% Similarity=0.363 Sum_probs=51.2 Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHH-------HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH Q ss_conf 66688649988888772899999999857811146-------88899999999999999713112246655780789999 Q gi|254781047|r 62 KYCSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKC-------RLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVAS 134 (404) Q Consensus 62 ~~~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~-------R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~ 134 (404) T Consensus 380 h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG-~qaVTkiH-~lFDWakk----------------- 440 (630) T KOG0742 380 HQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLG-AQAVTKIH-KLFDWAKK----------------- 440 (630) T ss_pred CCCHHHHEEEECCCCCCHHHHHHHHHHHCCCCEEHHCCCCCCCCH-HHHHHHHH-HHHHHHHH----------------- T ss_conf 243044003247999860499999988528741001378755521-78899999-98788751----------------- Q ss_pred HHHCCCCEEEEEEEEECCCHHHHHHHHH------------HHHHH-----HCCCEEEEECCCCHH Q ss_conf 9961387999842320471358889999------------99998-----549689981786867 Q gi|254781047|r 135 SIALESRVLCFDEFMITNIADAIILSRL------------FAALF-----SHGCIIVMTSNFIPE 182 (404) Q Consensus 135 ~l~~~~~lLCfDEF~V~DiaDAmil~rl------------~~~lf-----~~gv~lV~TSN~~P~ 182 (404) T Consensus 441 --S~rGLllFIDE------ADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpgd 497 (630) T KOG0742 441 --SRRGLLLFIDE------ADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGD 497 (630) T ss_pred --CCCCEEEEEHH------HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCC T ss_conf --56644998611------6789987520102588999998898762565542689960588321 |
|
| >TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA ( |
Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0025 Score=41.18 Aligned_cols=107 Identities=22% Similarity=0.287 Sum_probs=59.5 Q ss_pred CCCCCCCEEEE-ECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH-HHHHHHHHHHHH------CCCCCCCCCCCCHHHHH Q ss_conf 66668864998-88887728999999998578111468889999-999999999971------31122466557807899 Q gi|254781047|r 61 RKYCSMQGIYL-HGDVGQGKSMLMNLFFALVPIEKKCRLHFYEF-MKDVHSRIIMYR------KKIEFGEILESDPIPLV 132 (404) Q Consensus 61 ~~~~~~kGlYL-~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~F-M~~ih~~l~~~~------~~~~~~~~~~~dpl~~v 132 (404) T Consensus 521 ~~~nkP~GSFLF~GPTGVGKTElak~LA~------~LGv~l~RFDMSEYmEKHTVsRLIGsPPGYVGfEqGGL---LT-- 589 (774) T TIGR02639 521 GEPNKPVGSFLFVGPTGVGKTELAKQLAE------ELGVHLLRFDMSEYMEKHTVSRLIGSPPGYVGFEQGGL---LT-- 589 (774) T ss_pred CCCCCCEEEEEEECCCCCCHHHHHHHHHH------HHCCHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC---CH-- T ss_conf 77888168888647989625788999999------70820010465044689999874168888513167772---12-- Q ss_pred HHHHHCC-CCEEEEEEEEECCCHHHHHHHHHHHHHHH--------------CCCEEEEECCCCHHH Q ss_conf 9999613-87999842320471358889999999985--------------496899817868677 Q gi|254781047|r 133 ASSIALE-SRVLCFDEFMITNIADAIILSRLFAALFS--------------HGCIIVMTSNFIPEN 183 (404) Q Consensus 133 a~~l~~~-~~lLCfDEF~V~DiaDAmil~rl~~~lf~--------------~gv~lV~TSN~~P~d 183 (404) T Consensus 590 -~AvrK~P~cVLLLDEIEK---AHpDI~NILLQVM-D~AtLTDN~GrKaDFRNVILIMTSNaGa~E 650 (774) T TIGR02639 590 -DAVRKHPHCVLLLDEIEK---AHPDIYNILLQVM-DYATLTDNNGRKADFRNVILIMTSNAGARE 650 (774) T ss_pred -HHHCCCCCEEEHHHHHHH---HHHHHHHHHHHHH-CCCEEECCCCCEEEECCEEEEECCCCCCCC T ss_conf -233128853542346666---3133666787663-354340588857631136888403700102 |
ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins.. |
| >COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0093 Score=37.56 Aligned_cols=114 Identities=21% Similarity=0.251 Sum_probs=70.2 Q ss_pred CCCCCCEEEE-ECCCCCCHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHHCCC----CCCCCCCCCHHHHHHH Q ss_conf 6668864998-888877289999999985781--11468889999999999999971311----2246655780789999 Q gi|254781047|r 62 KYCSMQGIYL-HGDVGQGKSMLMNLFFALVPI--EKKCRLHFYEFMKDVHSRIIMYRKKI----EFGEILESDPIPLVAS 134 (404) Q Consensus 62 ~~~~~kGlYL-~G~VG~GKT~LMdlFy~~l~~--~~K~R~HFh~FM~~ih~~l~~~~~~~----~~~~~~~~dpl~~va~ 134 (404) T Consensus 516 dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~Ek--HsVSrLIGaPPGYVGyeeGG------~LTE 587 (786) T COG0542 516 DPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEK--HSVSRLIGAPPGYVGYEEGG------QLTE 587 (786) T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEECHHHHHHH--HHHHHHHCCCCCCCEECCCC------CHHH T ss_conf 999873578866788656999999999996599744455456877778--77998727999872006554------0037 Q ss_pred HHHCC-CCEEEEEEEEECCCHHHHHHHHHHHHHHH--------------CCCEEEEECCCCHHHHHCC Q ss_conf 99613-87999842320471358889999999985--------------4968998178686775238 Q gi|254781047|r 135 SIALE-SRVLCFDEFMITNIADAIILSRLFAALFS--------------HGCIIVMTSNFIPENLYKD 187 (404) Q Consensus 135 ~l~~~-~~lLCfDEF~V~DiaDAmil~rl~~~lf~--------------~gv~lV~TSN~~P~dLY~~ 187 (404) T Consensus 588 aVRr~PySViLlDEIEKAHp---dV~nilLQVl-DdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~ 651 (786) T COG0542 588 AVRRKPYSVILLDEIEKAHP---DVFNLLLQVL-DDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRD 651 (786) T ss_pred HHHCCCCEEEEECHHHHCCH---HHHHHHHHHH-CCCCEECCCCCEEECCEEEEEEECCCCHHHHHHH T ss_conf 66069986888412644088---9999999984-6780554899888430028998450265989753 |
|
| >KOG1051 consensus | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.016 Score=36.11 Aligned_cols=119 Identities=20% Similarity=0.160 Sum_probs=81.2 Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCH--HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCC-C Q ss_conf 6886499888887728999999998578111--468889999999999999971311224665578078999999613-8 Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEK--KCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALE-S 140 (404) Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~--K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~-~ 140 (404) T Consensus 589 ~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~e-vs-kli---gs--p~gyvG~e~gg~LteavrrrP~ 661 (898) T KOG1051 589 NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQE-VS-KLI---GS--PPGYVGKEEGGQLTEAVKRRPY 661 (898) T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECHHHHHH-HH-HCC---CC--CCCCCCCHHHHHHHHHHHCCCC T ss_conf 88858999788841389999999999728864268961455555-65-304---89--9555463057788899716996 Q ss_pred CEEEEEEEEECCCHHHHHHHHHHHHH----------HHCCCEEEEECCCCHHHHHCCCC Q ss_conf 79998423204713588899999999----------85496899817868677523874 Q gi|254781047|r 141 RVLCFDEFMITNIADAIILSRLFAAL----------FSHGCIIVMTSNFIPENLYKDEI 189 (404) Q Consensus 141 ~lLCfDEF~V~DiaDAmil~rl~~~l----------f~~gv~lV~TSN~~P~dLY~~GL 189 (404) T Consensus 662 sVvLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~~~~~i~~~~~ 720 (898) T KOG1051 662 SVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNVGSSAIANDAS 720 (898) T ss_pred EEEEEECHHHCCHHHHHHHHHHHHCCCCCCCCCCEEECCCEEEEEECCCCHHHHHCCCC T ss_conf 59998302222888999999998627400588867504645999942631666640454 |
|
| >TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0056 Score=38.94 Aligned_cols=98 Identities=17% Similarity=0.231 Sum_probs=44.6 Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCH------HHHHHHHHHHHHHHHHHHH--HHCCCCCCCCCCCCHHHHHHHHHHCC- Q ss_conf 99888887728999999998578111------4688899999999999999--71311224665578078999999613- Q gi|254781047|r 69 IYLHGDVGQGKSMLMNLFFALVPIEK------KCRLHFYEFMKDVHSRIIM--YRKKIEFGEILESDPIPLVASSIALE- 139 (404) Q Consensus 69 lYL~G~VG~GKT~LMdlFy~~l~~~~------K~R~HFh~FM~~ih~~l~~--~~~~~~~~~~~~~dpl~~va~~l~~~- 139 (404) T Consensus 197 piLVGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i----~~LDlg~LvAGtkyRGe-------FEeRlk~ii~ev~~~~ 265 (852) T TIGR03346 197 PVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRL----LALDMGALIAGAKYRGE-------FEERLKAVLNEVTKSE 265 (852) T ss_pred CCEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCC----EEEEHHHHHCCCCCCHH-------HHHHHHHHHHHHHHCC T ss_conf 721279998799999999999866999978851851----27528877521530078-------9999999999998589 Q ss_pred -CCEEEEEEEEEC----CCHHHHHHHHHHHHHHHCC-CEEEEEC Q ss_conf -879998423204----7135888999999998549-6899817 Q gi|254781047|r 140 -SRVLCFDEFMIT----NIADAIILSRLFAALFSHG-CIIVMTS 177 (404) Q Consensus 140 -~~lLCfDEF~V~----DiaDAmil~rl~~~lf~~g-v~lV~TS 177 (404) T Consensus 266 ~~iILFIDEiHtliGaG~~~G~~DAaNlLKPaLarGelr~IgAT 309 (852) T TIGR03346 266 GQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGAT 309 (852) T ss_pred CCEEEEEHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEC T ss_conf 98799961255532688766641067774378747985599827 |
Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. |
| >CHL00095 clpC Clp protease ATP binding subunit | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0055 Score=38.99 Aligned_cols=99 Identities=17% Similarity=0.217 Sum_probs=50.3 Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCH------HHHHHHHHHHHHHHHHHHH--HHCCCCCCCCCCCCHHHHHHHHHHC Q ss_conf 6499888887728999999998578111------4688899999999999999--7131122466557807899999961 Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPIEK------KCRLHFYEFMKDVHSRIIM--YRKKIEFGEILESDPIPLVASSIAL 138 (404) Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~------K~R~HFh~FM~~ih~~l~~--~~~~~~~~~~~~~dpl~~va~~l~~ 138 (404) T Consensus 201 NNpiLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i----~sLDl~~L~AGtkyRGe-------FEeRlk~il~ei~~ 269 (823) T CHL00095 201 NNPILIGEPGVGKTAIAEGLAQRIANRDVPDILEDKLV----LTLDIGLLLAGTKYRGE-------FEERIKKIMDEIKK 269 (823) T ss_pred CCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCE----EEEEHHHHHHCCCCCHH-------HHHHHHHHHHHHHH T ss_conf 88502379998799999999997608899868759936----88428877533422267-------99999999999985 Q ss_pred CCC-EEEEEEEEEC---CCH-HHHHHHHHHHHHHHCC-CEEEEE Q ss_conf 387-9998423204---713-5888999999998549-689981 Q gi|254781047|r 139 ESR-VLCFDEFMIT---NIA-DAIILSRLFAALFSHG-CIIVMT 176 (404) Q Consensus 139 ~~~-lLCfDEF~V~---Dia-DAmil~rl~~~lf~~g-v~lV~T 176 (404) T Consensus 270 ~~~iILFIDEiHtlvGaG~~~g~~DaaNlLKPaLarGel~~IGA 313 (823) T CHL00095 270 ANNIILVIDEIHTLIGAGAAEGAIDAANILKPALARGKLQCIGA 313 (823) T ss_pred CCCEEEEECCHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEEE T ss_conf 79869997351653288976664317887657864898669970 |
|
| >pfam07724 AAA_2 AAA domain (Cdc48 subfamily) | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0022 Score=41.48 Aligned_cols=109 Identities=17% Similarity=0.246 Sum_probs=59.8 Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHH--HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-HHHHHHHHHHCCCCEEE Q ss_conf 4998888877289999999985781114--68889999999999999971311224665578-07899999961387999 Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPIEKK--CRLHFYEFMKDVHSRIIMYRKKIEFGEILESD-PIPLVASSIALESRVLC 144 (404) Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~~~K--~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~d-pl~~va~~l~~~~~lLC 144 (404) T Consensus 5 ~~l~~GPsGvGKT~lAk~la~~l~~~~~~~i~~dm~e~~~~--~~v~~l~g~~~gyvg~~~~G~l~~~v~--~~p~~Vil 80 (168) T pfam07724 5 SFLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYMEE--HSVSRLIGAPPGYVGYEEGGQLTEAVR--RKPYSIVL 80 (168) T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCH--HHHHHHCCCCCCCCCCCCCCCHHHHHH--HCCCCEEE T ss_conf 99988989989999999999996798534488557565425--699987058998726242650789998--38984898 Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHCC--------------CEEEEECCCCHHHH Q ss_conf 84232047135888999999998549--------------68998178686775 Q gi|254781047|r 145 FDEFMITNIADAIILSRLFAALFSHG--------------CIIVMTSNFIPENL 184 (404) Q Consensus 145 fDEF~V~DiaDAmil~rl~~~lf~~g--------------v~lV~TSN~~P~dL 184 (404) T Consensus 81 lDEIeKa~---~~V~~~LL~-ild~g~~~d~~g~~v~~~n~i~i~Tsn~g~~~~ 130 (168) T pfam07724 81 IDEIEKAH---PGVQNDLLQ-ILEGGTLTDKQGRKVDFRNTLFIMTGNFGSEKI 130 (168) T ss_pred EHHHHHHC---HHHHHHHHH-HCCCCCEECCCCCEEECCCEEEEECCCCCCHHH T ss_conf 65776658---999999998-705870636999678446479997687372999 |
This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model. |
| >pfam00931 NB-ARC NB-ARC domain | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.034 Score=33.97 Aligned_cols=105 Identities=12% Similarity=0.109 Sum_probs=53.9 Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCHH----------HHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCCCHHHHHHH Q ss_conf 864998888877289999999985781114----------688899999999999999713112246-655780789999 Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKK----------CRLHFYEFMKDVHSRIIMYRKKIEFGE-ILESDPIPLVAS 134 (404) Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K----------~R~HFh~FM~~ih~~l~~~~~~~~~~~-~~~~dpl~~va~ 134 (404) T Consensus 19 ~~vI~I~G~gGiGKTtLA~~v~~~~~i~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~---~~~~~~~~~~~~~l~~~l~~ 95 (285) T pfam00931 19 LGVVGIVGMGGVGKTTLAKQIYNDDSVGGHFDSVAWVVVSKTYTEFRLQKDILQELG---LDDSDWVEKNESELAVKIKE 95 (285) T ss_pred CEEEEEECCCCCCHHHHHHHHHCCHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHC---CCCCCCCCCCHHHHHHHHHH T ss_conf 539998899956399999999716556505983899997976668999999999856---66545555789999999999 Q ss_pred HHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHH--HCCCEEEEECC Q ss_conf 996138799984232047135888999999998--54968998178 Q gi|254781047|r 135 SIALESRVLCFDEFMITNIADAIILSRLFAALF--SHGCIIVMTSN 178 (404) Q Consensus 135 ~l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf--~~gv~lV~TSN 178 (404) T Consensus 96 ~L~~kr~LiVLD-----DVw~~~~~~~l~~~~~~~~~gSrIIvTTR 136 (285) T pfam00931 96 ALLRKRFLLVLD-----DVWEKNDWDKIGVPFPDGENGSRVIVTTR 136 (285) T ss_pred HHCCCCEEEEEC-----CCCCHHHHHHHHCCCCCCCCCCEEEEECC T ss_conf 972796699963-----88878999997345757899827998557 |
|
| >pfam05673 DUF815 Protein of unknown function (DUF815) | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0044 Score=39.65 Aligned_cols=94 Identities=19% Similarity=0.247 Sum_probs=56.5 Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC--E Q ss_conf 88649988888772899999999857811146888999999999999997131122466557807899999961387--9 Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESR--V 142 (404) Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~--l 142 (404) T Consensus 52 pAnnvLLwG~RGtGKSSlVKall~~~~~~-gLrl------IEv~k-------~-------~L~~Lp~i~~~l~~~~~kFI 110 (248) T pfam05673 52 PANNVLLWGARGTGKSSLVKALLNEYADQ-GLRL------IEVDK-------D-------DLGDLPDIVDLLRGRPYRFI 110 (248) T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHC-CCEE------EEECH-------H-------HHCCHHHHHHHHHCCCCCEE T ss_conf 86136767689898889999999986314-9569------99878-------8-------87219999999964997579 Q ss_pred EEEEEE--EECCCHHHHHHHHHHHHHH---HCCCEEEEECCCC Q ss_conf 998423--2047135888999999998---5496899817868 Q gi|254781047|r 143 LCFDEF--MITNIADAIILSRLFAALF---SHGCIIVMTSNFI 180 (404) Q Consensus 143 LCfDEF--~V~DiaDAmil~rl~~~lf---~~gv~lV~TSN~~ 180 (404) T Consensus 111 iF~DDLSFe~~d-~~yk~LKs~LeG~l~~~p~NvliYaTSNRR 152 (248) T pfam05673 111 LFCDDLSFEEGE-SSYKALKSVLEGGLEARPDNVLIYATSNRR 152 (248) T ss_pred EEECCCCCCCCC-HHHHHHHHHHCCCCCCCCCEEEEEEECCCH T ss_conf 996355767897-369999999657644688738999842700 |
This family consists of several bacterial proteins of unknown function. |
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.025 Score=34.85 Aligned_cols=112 Identities=18% Similarity=0.148 Sum_probs=74.6 Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHH------HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCC Q ss_conf 649988888772899999999857811146888999------99999999999713112246655780789999996138 Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYE------FMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALES 140 (404) Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~------FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~ 140 (404) T Consensus 26 e~~~i~G~nGaGKSTLl~~l~gl~~~~~-G~i~~~g~~~~~~~~~~~~~~i~~v~Q-L----SgGqkqrv~iA~al~~~p 99 (157) T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKPTS-GEILIDGKDIAKLPLEELRRRIGYVPQ-L----SGGQRQRVALARALLLNP 99 (157) T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCC-CEEEECCEECCCCCHHHHHHCCCCCCC-C----CHHHHHHHHHHHHHHCCC T ss_conf 7999987889998999999958847996-289999999997999999940608766-8----869999999999997099 Q ss_pred CEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH Q ss_conf 79998423-204713588899999999854968998178686775 Q gi|254781047|r 141 RVLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSNFIPENL 184 (404) Q Consensus 141 ~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dL 184 (404) T Consensus 100 ~ililDEPtsgLD~~~~~~l~~~i~~l~~~g~tii~vtH~~~~~~ 144 (157) T cd00267 100 DLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAE 144 (157) T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHH T ss_conf 999996987668999999999999999968999999908999999 |
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.007 Score=38.35 Aligned_cols=95 Identities=18% Similarity=0.177 Sum_probs=59.4 Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCC--CE Q ss_conf 8864998888877289999999985781114688899999999999999713112246655780789999996138--79 Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALES--RV 142 (404) Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~--~l 142 (404) T Consensus 84 pANnVLLwGaRGtGKSSLVKA~~~e~~~~g-lr------LVEV~k~d--------------l~~Lp~l~~~Lr~~~~kFI 142 (287) T COG2607 84 PANNVLLWGARGTGKSSLVKALLNEYADEG-LR------LVEVDKED--------------LATLPDLVELLRARPEKFI 142 (287) T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHCC-CE------EEEECHHH--------------HHHHHHHHHHHHCCCCEEE T ss_conf 652367763777774799999999987417-70------79976888--------------8657999999961886089 Q ss_pred EEEEEEE-ECCCHHHHHHHHHHHHHHH---CCCEEEEECCCC Q ss_conf 9984232-0471358889999999985---496899817868 Q gi|254781047|r 143 LCFDEFM-ITNIADAIILSRLFAALFS---HGCIIVMTSNFI 180 (404) Q Consensus 143 LCfDEF~-V~DiaDAmil~rl~~~lf~---~gv~lV~TSN~~ 180 (404) T Consensus 143 lFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRR 184 (287) T COG2607 143 LFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNRR 184 (287) T ss_pred EEECCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCCC T ss_conf 995677777781389999998538855688707999715875 |
|
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.018 Score=35.80 Aligned_cols=113 Identities=16% Similarity=0.105 Sum_probs=52.1 Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHHHHH-------HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHC-- Q ss_conf 4998888877289999999985781114688-------8999999999999997131122466557807899999961-- Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPIEKKCRL-------HFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIAL-- 138 (404) Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~-------HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~-- 138 (404) T Consensus 44 n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t-~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~ 122 (366) T COG1474 44 NIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRT-PYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKG 122 (366) T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCC-HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCC T ss_conf 079988999873289999999997331567579995130787-8799999999826899767632689999999777418 Q ss_pred CCCEEEEEEEEECCCHHHHHHHHHHHHHH--HCCCEEEEECCCCH Q ss_conf 38799984232047135888999999998--54968998178686 Q gi|254781047|r 139 ESRVLCFDEFMITNIADAIILSRLFAALF--SHGCIIVMTSNFIP 181 (404) Q Consensus 139 ~~~lLCfDEF~V~DiaDAmil~rl~~~lf--~~gv~lV~TSN~~P 181 (404) T Consensus 123 ~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~ 167 (366) T COG1474 123 KTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDK 167 (366) T ss_pred CEEEEEECCHHHHHCCCCCHHHHEECCCCCCCEEEEEEEEECCHH T ss_conf 759999764765415464145511124776753799999735488 |
|
| >PHA02244 ATPase-like protein | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.073 Score=31.90 Aligned_cols=86 Identities=15% Similarity=0.243 Sum_probs=51.7 Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEE Q ss_conf 86499888887728999999998578111468889999999999999971311224665578078999999613879998 Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCF 145 (404) Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCf 145 (404) T Consensus 119 nipV~L~G~AGsGKt~~A~qIA~aLdl~----FYf---~gAI~~ef-~L~Gf~DAnG~yh~T~f~----kaFk~GGLfLl 186 (383) T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLD----FYF---MNAIMDEF-ELKGFIDANGKFHETPFY----EAFKKGGLFFI 186 (383) T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHCCC----CEE---CHHHHHHH-HCCCEECCCCCEECCHHH----HHHHCCCEEEE T ss_conf 9856997588886348999999985888----244---13230134-301256489967263899----99861887997 Q ss_pred EEEEECCCHHHHHHHHHHHHH Q ss_conf 423204713588899999999 Q gi|254781047|r 146 DEFMITNIADAIILSRLFAAL 166 (404) Q Consensus 146 DEF~V~DiaDAmil~rl~~~l 166 (404) T Consensus 187 DEiDA---SnP~aL~~lNaAL 204 (383) T PHA02244 187 DEIDA---SIPEALIIINSAI 204 (383) T ss_pred EHHCC---CCHHHHHHHHHHH T ss_conf 32004---4879999998998 |
|
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.013 Score=36.66 Aligned_cols=108 Identities=14% Similarity=0.146 Sum_probs=61.9 Q ss_pred CEEEEECCCCCCHHHHHHHHH-----HHCCC--CHH-HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH-- Q ss_conf 649988888772899999999-----85781--114-68889999999999999971311224665578078999999-- Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFF-----ALVPI--EKK-CRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSI-- 136 (404) Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy-----~~l~~--~~K-~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l-- 136 (404) T Consensus 22 ~~~iItGpN~sGKSt~Lr~i~l~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~lSg----g~~~~~~l~~~l~~ 94 (162) T cd03227 22 SLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIV---AAVSAELIFTRLQLSG----GEKELSALALILAL 94 (162) T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCC---HHHEEEEEECCCCCCC----CHHHHHHHHHHHHH T ss_conf 6899989987757999999999999863267752555427764---0230576641200054----29999999999985 Q ss_pred --HCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECCCCH Q ss_conf --613879998423-204713588899999999854968998178686 Q gi|254781047|r 137 --ALESRVLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSNFIP 181 (404) Q Consensus 137 --~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P 181 (404) T Consensus 95 ~~~~~~~lillDE~~~Gtd~~~~~~l~~~i~~~~~~~~~~i~tTH~~e 142 (162) T cd03227 95 ASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPE 142 (162) T ss_pred CCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHH T ss_conf 424898489963655799988999999999999976998999797399 |
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.081 Score=31.61 Aligned_cols=112 Identities=18% Similarity=0.205 Sum_probs=66.9 Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC---CC-----------H--HHHHHH------HHHHHHHHHHHHH---HHCCCCCCC Q ss_conf 499888887728999999998578---11-----------1--468889------9999999999999---713112246 Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVP---IE-----------K--KCRLHF------YEFMKDVHSRIIM---YRKKIEFGE 122 (404) Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~---~~-----------~--K~R~HF------h~FM~~ih~~l~~---~~~~~~~~~ 122 (404) T Consensus 35 ~~~llGpnGaGKSTLl~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~igyv~q~~~~~~~~tv~e~l~~~~~l~~-LS~g- 112 (192) T cd03232 35 LTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLRG-LSVE- 112 (192) T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCEECCHHHHHHEEEEECCHHCCCCCHHHHHHHHHHHHHC-CCHH- T ss_conf 99999999998899999983798788317899987827667756227999411330734549999986677733-7976- Q ss_pred CCCCCHHHHHHHHHHCCCCEEEEEEEEE-CCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH Q ss_conf 6557807899999961387999842320-4713588899999999854968998178686775 Q gi|254781047|r 123 ILESDPIPLVASSIALESRVLCFDEFMI-TNIADAIILSRLFAALFSHGCIIVMTSNFIPENL 184 (404) Q Consensus 123 ~~~~dpl~~va~~l~~~~~lLCfDEF~V-~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dL 184 (404) T Consensus 113 ---qrqrv~iA~aL~~~P~lllLDEPt~gLD~~~~~~i~~~l~~l~~~g~tiii~th~~~~~i 172 (192) T cd03232 113 ---QRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASI 172 (192) T ss_pred ---HHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHH T ss_conf ---765899999984499889984887688989999999999999969999999983637999 |
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.2 Score=29.13 Aligned_cols=114 Identities=17% Similarity=0.048 Sum_probs=61.2 Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCC-HH-----------------------HHHHHHHHH-----HHHHHHHHHHH--- Q ss_conf 49988888772899999999857811-14-----------------------688899999-----99999999971--- Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPIE-KK-----------------------CRLHFYEFM-----KDVHSRIIMYR--- 115 (404) Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~~-~K-----------------------~R~HFh~FM-----~~ih~~l~~~~--- 115 (404) T Consensus 52 ivgllG~NGaGKSTLlk~I~Gl~~P~~G~I~~~G~i~~~~~~~~l~~~lt~~eni~~~~~~~g~~~~~~~~~~~~~le~~ 131 (264) T PRK13546 52 VIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFS 131 (264) T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEEEEEECCCCCCCCEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHH T ss_conf 99999899861999999996798888747999988748850356574430001588899872424999999999999851 Q ss_pred ------CCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECCCCH Q ss_conf ------311224665578078999999613879998423-204713588899999999854968998178686 Q gi|254781047|r 116 ------KKIEFGEILESDPIPLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSNFIP 181 (404) Q Consensus 116 ------~~~~~~~~~~~dpl~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P 181 (404) T Consensus 132 ~l~~~~~~~~~~LSgGqkqrl~lA~al~~~P~iLiLDEPts~LD~~~~~~i~~~i~~l~~~g~TiilvSH~l~ 204 (264) T PRK13546 132 ELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLG 204 (264) T ss_pred CCHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH T ss_conf 2055651755347999999999999995699999995987548999999999999999968989999848789 |
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.2 Score=29.16 Aligned_cols=112 Identities=22% Similarity=0.251 Sum_probs=56.6 Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHH-----------------------HHHHHH--------HHHHHHHHH Q ss_conf 6499888887728999999998578111468889-----------------------999999--------999999971 Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHF-----------------------YEFMKD--------VHSRIIMYR 115 (404) Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HF-----------------------h~FM~~--------ih~~l~~~~ 115 (404) T Consensus 49 eivgilG~NGaGKSTLl~~i~Gl~~p~~-G~I~i~G~~~~~~~~~~~~~p~ltv~enl~~~~~~~g~~~~~~~~~~~~~l 127 (224) T cd03220 49 ERIGLIGRNGAGKSTLLRLLAGIYPPDS-GTVTVRGRVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEII 127 (224) T ss_pred CEEEEECCCCCHHHHHHHHHHCCCCCCC-CEEEECCEECCCCCCCEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH T ss_conf 8999997999819999999975877787-769999898430157420399882999999999982965899999999999 Q ss_pred CCCCCCC---------CCCCCHHHHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECCC Q ss_conf 3112246---------65578078999999613879998423-2047135888999999998549689981786 Q gi|254781047|r 116 KKIEFGE---------ILESDPIPLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSNF 179 (404) Q Consensus 116 ~~~~~~~---------~~~~dpl~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~ 179 (404) T Consensus 128 ~~~~L~~~~~~~~~~LSgG~kqRl~iA~al~~~P~illLDEPt~gLD~~~~~~i~~~i~~l~~~g~tiii~sH~ 201 (224) T cd03220 128 EFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHD 201 (224) T ss_pred HHHCCHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCC T ss_conf 86367556538665469999999999999966999999918866569999999999999998589999998898 |
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.17 Score=29.49 Aligned_cols=117 Identities=16% Similarity=0.250 Sum_probs=60.8 Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCC----------------HHHHH--HHHHHH--------------H--------HH Q ss_conf 49988888772899999999857811----------------14688--899999--------------9--------99 Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPIE----------------KKCRL--HFYEFM--------------K--------DV 107 (404) Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~~----------------~K~R~--HFh~FM--------------~--------~i 107 (404) T Consensus 28 ~~~i~GpSG~GKSTlLr~iaGl~~p~~G~I~~~g~~i~~~~~~~R~ig~VfQ~~~LfP~ltV~eNI~~~l~~~~~~~~e~ 107 (213) T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEI 107 (213) T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHH T ss_conf 99999999880999999997699998639999999999999767887899458764654709999998999859998999 Q ss_pred HHHHHHHHCCCCCCCCCCCCHH---------HHHHHHHHCCCCEEEEEE-EEECCCHHHHHHHHHHHHHHHC-CCEEEEE Q ss_conf 9999997131122466557807---------899999961387999842-3204713588899999999854-9689981 Q gi|254781047|r 108 HSRIIMYRKKIEFGEILESDPI---------PLVASSIALESRVLCFDE-FMITNIADAIILSRLFAALFSH-GCIIVMT 176 (404) Q Consensus 108 h~~l~~~~~~~~~~~~~~~dpl---------~~va~~l~~~~~lLCfDE-F~V~DiaDAmil~rl~~~lf~~-gv~lV~T 176 (404) T Consensus 108 ~~~v~~~l~~~gl~~~~~~~P~~LSGGqkQRVaiARAl~~~P~lLLlDEP~saLD~~~r~~i~~~l~~~~~~~~~T~i~v 187 (213) T cd03301 108 DERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYV 187 (213) T ss_pred HHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEE T ss_conf 99999999875992465099556999999999999998759998998388764298999999999999999749989999 Q ss_pred CCCCHHHH Q ss_conf 78686775 Q gi|254781047|r 177 SNFIPENL 184 (404) Q Consensus 177 SN~~P~dL 184 (404) T Consensus 188 THd~~ea~ 195 (213) T cd03301 188 THDQVEAM 195 (213) T ss_pred CCCHHHHH T ss_conf 99989999 |
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.054 Score=32.69 Aligned_cols=108 Identities=19% Similarity=0.190 Sum_probs=51.8 Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHH-----HHHHHHHHHHHH-----------HHCCCCCCCCCCCCHHHH Q ss_conf 4998888877289999999985781114688899-----999999999999-----------713112246655780789 Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFY-----EFMKDVHSRIIM-----------YRKKIEFGEILESDPIPL 131 (404) Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh-----~FM~~ih~~l~~-----------~~~~~~~~~~~~~dpl~~ 131 (404) T Consensus 30 ~~aivG~sGsGKSTLl~~l~G~~~p~~-G~i~i~g~~i~~~~~~~~~~i~~v~Q~~~lf~~ti~~nlg~~LSgGqkqRv~ 108 (178) T cd03247 30 KIALLGRSGSGKSTLLQLLTGDLKPQQ-GEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGERQRLA 108 (178) T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCC-CEEEECCEEHHHHHHHHHHHEEEECCCCCCCCCHHHHHCCCCCCHHHHHHHH T ss_conf 999999998759999999986176678-8699999988997899997208983556364541998628888999999999 Q ss_pred HHHHHHCCCCEEEEEEEEE-CCCHHHHHHHHHHHHHHHCCCEEEEE Q ss_conf 9999961387999842320-47135888999999998549689981 Q gi|254781047|r 132 VASSIALESRVLCFDEFMI-TNIADAIILSRLFAALFSHGCIIVMT 176 (404) Q Consensus 132 va~~l~~~~~lLCfDEF~V-~DiaDAmil~rl~~~lf~~gv~lV~T 176 (404) T Consensus 109 iAral~~~p~ililDEpts~LD~~t~~~i~~~l~~~~~~~Tvi~it 154 (178) T cd03247 109 LARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWIT 154 (178) T ss_pred HHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEE T ss_conf 9999964979767228655699899999999999983999999980 |
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.23 Score=28.72 Aligned_cols=111 Identities=22% Similarity=0.183 Sum_probs=69.6 Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCH----------------HHHHHHHHHHHHHHHHHHH-----HHCCCCCCCCCC Q ss_conf 6499888887728999999998578111----------------4688899999999999999-----713112246655 Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPIEK----------------KCRLHFYEFMKDVHSRIIM-----YRKKIEFGEILE 125 (404) Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~----------------K~R~HFh~FM~~ih~~l~~-----~~~~~~~~~~~~ 125 (404) T Consensus 26 e~~~liG~nGsGKTTLl~~i~G~~~~~~G~I~~~g~~i~~~~~~~~~~~----i~~v~Q~l~~~~l~~~~~~~~~~LSGG 101 (180) T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARK----IAYVPQALELLGLAHLADRPFNELSGG 101 (180) T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCC----CCHHHHHHHHCCCHHHHCCCHHHCCHH T ss_conf 7999998999889999999957989987289999999896999999554----649999999859977864991037999 Q ss_pred CCHHHHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHH-CCCEEEEECCCCH Q ss_conf 78078999999613879998423-20471358889999999985-4968998178686 Q gi|254781047|r 126 SDPIPLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFS-HGCIIVMTSNFIP 181 (404) Q Consensus 126 ~dpl~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~-~gv~lV~TSN~~P 181 (404) T Consensus 102 qkQrv~iA~aL~~~P~ililDEPts~LD~~~~~~i~~~i~~l~~~~~~tii~itHdl~ 159 (180) T cd03214 102 ERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN 159 (180) T ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH T ss_conf 9999999999986896478858754479999999999999999846989999907989 |
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.12 Score=30.52 Aligned_cols=74 Identities=19% Similarity=0.174 Sum_probs=41.4 Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEE Q ss_conf 68864998888877289999999985781114688899999999999999713112246655780789999996138799 Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVL 143 (404) Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lL 143 (404) T Consensus 50 e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~--------------------k~tsGp~leK~gDlaaiL--t~Le~~DVL 107 (332) T COG2255 50 EALDHVLLFGPPGLGKTTLAHIIANELGVNL--------------------KITSGPALEKPGDLAAIL--TNLEEGDVL 107 (332) T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCE--------------------EECCCCCCCCHHHHHHHH--HCCCCCCEE T ss_conf 8767478647998768889999999856773--------------------763662015726599998--639867767 Q ss_pred EEEEEEECCCHHHHHH Q ss_conf 9842320471358889 Q gi|254781047|r 144 CFDEFMITNIADAIIL 159 (404) Q Consensus 144 CfDEF~V~DiaDAmil 159 (404) T Consensus 108 FIDEIHrl~~~vEE~L 123 (332) T COG2255 108 FIDEIHRLSPAVEEVL 123 (332) T ss_pred EEEHHHHCCHHHHHHH T ss_conf 7725531474289896 |
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.019 Score=35.63 Aligned_cols=115 Identities=17% Similarity=0.152 Sum_probs=64.3 Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCH-H--------HHHHHHHHHH---HHHHHHHHHHCCCCCC-CCCCCCHHHHH Q ss_conf 86499888887728999999998578111-4--------6888999999---9999999971311224-66557807899 Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPIEK-K--------CRLHFYEFMK---DVHSRIIMYRKKIEFG-EILESDPIPLV 132 (404) Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~-K--------~R~HFh~FM~---~ih~~l~~~~~~~~~~-~~~~~dpl~~v 132 (404) T Consensus 28 G~~vaIvG~sGsGKSTLl~ll~gl~~p~~G~i~i~g~~~~~~~~~~~~~~i~~v~Q~~~lf~~ti~eNiLSGGQkQRval 107 (173) T cd03246 28 GESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQRLGL 107 (173) T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHCCEEEEECCCEECCCCHHHHCCCHHHHHHHHH T ss_conf 99999999999809999999966666799989999999332899898420899908883677758997676999999999 Q ss_pred HHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECCCC Q ss_conf 9999613879998423-20471358889999999985496899817868 Q gi|254781047|r 133 ASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSNFI 180 (404) Q Consensus 133 a~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~ 180 (404) T Consensus 108 ARal~~~p~ililDEpts~LD~~~e~~i~~~l~~l~~~~~Tvi~vtH~~ 156 (173) T cd03246 108 ARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRP 156 (173) T ss_pred HHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH T ss_conf 9998279999999687668998999999999997864898999984799 |
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.083 Score=31.53 Aligned_cols=95 Identities=17% Similarity=0.118 Sum_probs=54.4 Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCHH-------HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC---HHHHHHHHHH- Q ss_conf 998888877289999999985781114-------68889999999999999971311224665578---0789999996- Q gi|254781047|r 69 IYLHGDVGQGKSMLMNLFFALVPIEKK-------CRLHFYEFMKDVHSRIIMYRKKIEFGEILESD---PIPLVASSIA- 137 (404) Q Consensus 69 lYL~G~VG~GKT~LMdlFy~~l~~~~K-------~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~d---pl~~va~~l~- 137 (404) T Consensus 46 ~lltGe~GtGKTtllr~l~~~l~~~~~~~~~i~~~~l~~~~ll~~i~~~lg~~---~-~~~~-~~~~~~~l~~~L~~~~~ 120 (269) T TIGR03015 46 ILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLE---T-EGRD-KAALLRELEDFLIEQFA 120 (269) T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCC---C-CCCC-HHHHHHHHHHHHHHHHH T ss_conf 99972998988999999998459345489997699999999999999985989---8-8989-99999999999999996 Q ss_pred -CCCCEEEEEEEEECCCHHHHHHHHHHHHHHH Q ss_conf -1387999842320471358889999999985 Q gi|254781047|r 138 -LESRVLCFDEFMITNIADAIILSRLFAALFS 168 (404) Q Consensus 138 -~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~ 168 (404) T Consensus 121 ~g~~~vliIDEAq~L~~~~Le~Lr~L~n~e~~ 152 (269) T TIGR03015 121 AGKRALLVVDEAQNLTPELLEELRMLSNFQTD 152 (269) T ss_pred CCCCEEEEEECHHHCCHHHHHHHHHHHCCCCC T ss_conf 69946999724221999999999999701358 |
Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. |
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.075 Score=31.79 Aligned_cols=100 Identities=16% Similarity=0.126 Sum_probs=61.9 Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEE Q ss_conf 86499888887728999999998578111468889999999999999971311224665578078999999613879998 Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCF 145 (404) Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCf 145 (404) T Consensus 26 ge~~~l~G~NGsGKTTl~~~l~G~~~~~~-G~i~~~~--~~~i~y~~QL----S----gGqkqr~~la~al~~~p~iliL 94 (144) T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELEPDE-GIVTWGS--TVKIGYFEQL----S----GGEKMRLALAKLLLENPNLLLL 94 (144) T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCC-EEEEECC--CCEEEEEHHC----C----HHHHHHHHHHHHHCCCCCEEEE T ss_conf 99999998999849999999848988985-0999999--6089987007----9----9999999999997259989999 Q ss_pred EEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECC Q ss_conf 423-204713588899999999854968998178 Q gi|254781047|r 146 DEF-MITNIADAIILSRLFAALFSHGCIIVMTSN 178 (404) Q Consensus 146 DEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN 178 (404) T Consensus 95 DEPt~~LD~~~~~~i~~~l~~~--~~tii~vsHd 126 (144) T cd03221 95 DEPTNHLDLESIEALEEALKEY--PGTVILVSHD 126 (144) T ss_pred ECCCCCCCHHHHHHHHHHHHHC--CCEEEEEECC T ss_conf 5775558999999999999970--9999999679 |
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.076 Score=31.76 Aligned_cols=93 Identities=17% Similarity=0.179 Sum_probs=56.6 Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEE Q ss_conf 49988888772899999999857811146888999999999999997131122466557807899999961387999842 Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCFDE 147 (404) Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCfDE 147 (404) T Consensus 39 i~~i~GpR~~GKTtllk~l~~~~~~~-~iy~~~~d~-~~~~~~l--------------~d~~~~~~~~~~~~~~yifLDE 102 (398) T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE-IIYINFDDL-RLDRIEL--------------LDLLRAYIELKEREKSYIFLDE 102 (398) T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCC-EEEEECCCC-CCCHHHH--------------HHHHHHHHHHHCCCCCEEEEEE T ss_conf 49998886477899999999747773-599973620-0013567--------------7899999985222574599983 Q ss_pred EEECCCHHHHHHHHHHHHHHHCCC--EEEEECCCCH Q ss_conf 320471358889999999985496--8998178686 Q gi|254781047|r 148 FMITNIADAIILSRLFAALFSHGC--IIVMTSNFIP 181 (404) Q Consensus 148 F~V~DiaDAmil~rl~~~lf~~gv--~lV~TSN~~P 181 (404) T Consensus 103 Iq~v~~-----W~~~lk~l~d~~~~~v~itgsss~l 133 (398) T COG1373 103 IQNVPD-----WERALKYLYDRGNLDVLITGSSSSL 133 (398) T ss_pred ECCCHH-----HHHHHHHHHCCCCCEEEEECCCHHH T ss_conf 337610-----8999999975677509998371675 |
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.034 Score=34.03 Aligned_cols=108 Identities=18% Similarity=0.234 Sum_probs=60.7 Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHH-------------HHHHHHHHHHHHHH----HCCCCCCCCCCCCHH Q ss_conf 6499888887728999999998578111468889-------------99999999999997----131122466557807 Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHF-------------YEFMKDVHSRIIMY----RKKIEFGEILESDPI 129 (404) Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HF-------------h~FM~~ih~~l~~~----~~~~~~~~~~~~dpl 129 (404) T Consensus 29 e~i~ivG~sGsGKSTLl~ll~gl~~p~~-G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~tv~eNi---LSgGq~Qr 104 (171) T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLYDPTS-GEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI---LSGGQRQR 104 (171) T ss_pred CEEEEECCCCCHHHHHHHHHHCCCCCCC-CEEEECCEECCCCCHHHHHHHEEEECCCCCCCCCCHHHHC---CCHHHHHH T ss_conf 8999999999839999999976775897-4899999998859989986318999666843757799977---44889999 Q ss_pred HHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECC Q ss_conf 8999999613879998423-204713588899999999854968998178 Q gi|254781047|r 130 PLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSN 178 (404) Q Consensus 130 ~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN 178 (404) T Consensus 105 i~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~Tvi~vtH~ 154 (171) T cd03228 105 IAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHR 154 (171) T ss_pred HHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECC T ss_conf 99999997489989995776679989999999999998099989999579 |
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.19 Score=29.31 Aligned_cols=111 Identities=16% Similarity=0.084 Sum_probs=58.5 Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHH----HHHHHHH--HHHHHHHHHHHHH------CCCCCCCCCCCCHHHHHHHH Q ss_conf 4998888877289999999985781114----6888999--9999999999971------31122466557807899999 Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPIEKK----CRLHFYE--FMKDVHSRIIMYR------KKIEFGEILESDPIPLVASS 135 (404) Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~~~K----~R~HFh~--FM~~ih~~l~~~~------~~~~~~~~~~~dpl~~va~~ 135 (404) T Consensus 23 ~~~iiG~nGsGKSTLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~l~~~~l~~~~~~LSGGqkQRvaiAra 101 (176) T cd03238 23 LVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQF-LIDVGLGYLTLGQKLSTLSGGELQRVKLASE 101 (176) T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCHHHCCHHHCCCCCEEEHHHHHH-HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH T ss_conf 999999999989999998887610311203210137553688577999-9974886677899168689999999999999 Q ss_pred HHCCCC--EEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECCC Q ss_conf 961387--9998423-2047135888999999998549689981786 Q gi|254781047|r 136 IALESR--VLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSNF 179 (404) Q Consensus 136 l~~~~~--lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~ 179 (404) T Consensus 102 L~~~p~~~ililDEPtsgLD~~~~~~l~~~l~~l~~~g~TvI~vtHd 148 (176) T cd03238 102 LFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHN 148 (176) T ss_pred HHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC T ss_conf 98689986899717744589879999999999999879989999478 |
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.096 Score=31.13 Aligned_cols=118 Identities=14% Similarity=0.146 Sum_probs=64.0 Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCH--HHH--------------------------HHHHHHHHHHHHHHH---HH Q ss_conf 86499888887728999999998578111--468--------------------------889999999999999---97 Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPIEK--KCR--------------------------LHFYEFMKDVHSRII---MY 114 (404) Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~--K~R--------------------------~HFh~FM~~ih~~l~---~~ 114 (404) T Consensus 33 Gei~~llG~nGsGKSTLl~~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~v~q~~~~~~~l--tv~e~l~~~~~~ 110 (202) T cd03233 33 GEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTL--TVRETLDFALRC 110 (202) T ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCEECCHHHHHHHCCEEEECCCCCCCCCC--CHHHHHHHHHHH T ss_conf 849999989999889999998378789875137999999994051486420199986732237688--099999999984 Q ss_pred HCCC-CCCCCCCCCHHHHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHH-CCCEEEEECCCCHHHHH Q ss_conf 1311-224665578078999999613879998423-20471358889999999985-49689981786867752 Q gi|254781047|r 115 RKKI-EFGEILESDPIPLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFS-HGCIIVMTSNFIPENLY 185 (404) Q Consensus 115 ~~~~-~~~~~~~~dpl~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~-~gv~lV~TSN~~P~dLY 185 (404) T Consensus 111 ~~~~~~~~LSgGqkqRv~iA~aL~~~P~illlDEPt~gLD~~~~~~i~~~l~~l~~~~~~t~ii~~~~~~~~~~ 184 (202) T cd03233 111 KGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIY 184 (202) T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHH T ss_conf 65874445899999999999999529988998387656899999999999999998779989999906989999 |
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.21 Score=29.00 Aligned_cols=113 Identities=19% Similarity=0.202 Sum_probs=70.7 Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHH----HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCC Q ss_conf 8649988888772899999999857811146888999----999999999997131122466557807899999961387 Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYE----FMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESR 141 (404) Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~----FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~ 141 (404) T Consensus 26 Gei~~lvG~nGaGKSTl~~~i~Gl~~p~~-G~i~i~G~~i~~~~-~~~~~-~~gi~~v~qLSgG~~Qrv~iaral~~~p~ 102 (163) T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYKPDS-GEILVDGKEVSFAS-PRDAR-RAGIAMVYQLSVGERQMVEIARALARNAR 102 (163) T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCC-CEEEECCEECCCCC-HHHHH-HCCCCEECCCCHHHHHHHHHHHHHHHCCC T ss_conf 98999998899899999999957768985-78999999999999-99999-87994894699899999999999972999 Q ss_pred EEEEEEEE-ECCCHHHHHHHHHHHHHHHCCCEEEEECCCCH Q ss_conf 99984232-04713588899999999854968998178686 Q gi|254781047|r 142 VLCFDEFM-ITNIADAIILSRLFAALFSHGCIIVMTSNFIP 181 (404) Q Consensus 142 lLCfDEF~-V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P 181 (404) T Consensus 103 llilDEPt~gLD~~~~~~i~~~l~~l~~~G~til~vtH~l~ 143 (163) T cd03216 103 LLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD 143 (163) T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH T ss_conf 99990975579999999999999999878989999938499 |
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.22 Score=28.89 Aligned_cols=107 Identities=16% Similarity=0.134 Sum_probs=64.0 Q ss_pred EEEEECCCCCCHHHHHHHHHHHC---CCC--------------HHHHHHHHHHHH----------HHHHHHHHHHCCCCC Q ss_conf 49988888772899999999857---811--------------146888999999----------999999997131122 Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALV---PIE--------------KKCRLHFYEFMK----------DVHSRIIMYRKKIEF 120 (404) Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l---~~~--------------~K~R~HFh~FM~----------~ih~~l~~~~~~~~~ 120 (404) T Consensus 28 i~~iiGpnGaGKSTLl~~i~G~~~~~~~~G~I~~~g~~i~~~~~~~~~~~gi~~~~q~~~~~~~~~~~~~l~~~~~~LS- 106 (200) T cd03217 28 VHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRYVNEGFS- 106 (200) T ss_pred EEEEECCCCCCHHHHHHHHCCCCCCCCCCCEEEECCEECCCCCHHHHHHCCEEEECCCHHHCCCCCHHHHHHHHCCCCC- T ss_conf 9999968999999999997077777852007999999988699999997694896367687079849999976463679- Q ss_pred CCCCCCCHHHHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECC Q ss_conf 4665578078999999613879998423-204713588899999999854968998178 Q gi|254781047|r 121 GEILESDPIPLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSN 178 (404) Q Consensus 121 ~~~~~~dpl~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN 178 (404) T Consensus 107 ---GGekqrv~iaral~~~P~lllLDEPtsgLD~~~~~~i~~~i~~l~~~g~tiiiitH 162 (200) T cd03217 107 ---GGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITH 162 (200) T ss_pred ---HHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEE T ss_conf ---99999999999996099999996962269999999999999999857999999996 |
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.47 Score=26.72 Aligned_cols=115 Identities=12% Similarity=0.093 Sum_probs=55.6 Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC------CCHHHHHHHHHHHHHHHHHHHHHHCCC-----CCCCCCCCCHHHH--- Q ss_conf 86499888887728999999998578------111468889999999999999971311-----2246655780789--- Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVP------IEKKCRLHFYEFMKDVHSRIIMYRKKI-----EFGEILESDPIPL--- 131 (404) Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~------~~~K~R~HFh~FM~~ih~~l~~~~~~~-----~~~~~~~~dpl~~--- 131 (404) T Consensus 32 ~~l~lv~APaG~GKTtl~a~w~~~~~~~~Wlsld~~-d~~~~~f~~~l~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (903) T PRK04841 32 YRLVLVRSPAGYGKTTLASQWAAGKNNVGWYSLDES-DNQPERFASYLIAALQQATNGHCSKSEALAEKRQYASLTSLFA 110 (903) T ss_pred CCEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCC-CCCHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCHHHHHH T ss_conf 997999779998899999999834998599858854-4899999999999999856543311231135566554999999 Q ss_pred -HHHHHHCC--CCEEEEEEEEE-CCCHHHHHHHHHHHHHHHCCCEEEEECC-CCHH Q ss_conf -99999613--87999842320-4713588899999999854968998178-6867 Q gi|254781047|r 132 -VASSIALE--SRVLCFDEFMI-TNIADAIILSRLFAALFSHGCIIVMTSN-FIPE 182 (404) Q Consensus 132 -va~~l~~~--~~lLCfDEF~V-~DiaDAmil~rl~~~lf~~gv~lV~TSN-~~P~ 182 (404) T Consensus 111 ~l~~~l~~~~~~~~lvlDD~h~i~~~~~~~~l~~Ll~~~p~-~l~lvl~sR~~p~l 165 (903) T PRK04841 111 QLFIELSDWHQPLYLVLDDYHLITNPEIHEAMRFFLRHQPE-NLTLVVLSRNLPPL 165 (903) T ss_pred HHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCC-CEEEEEEECCCCCC T ss_conf 99999755899869998683648886899999999983898-83899876899987 |
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.14 Score=30.08 Aligned_cols=102 Identities=14% Similarity=0.091 Sum_probs=64.1 Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEE Q ss_conf 49988888772899999999857811146888999999999999997131122466557807899999961387999842 Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCFDE 147 (404) Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCfDE 147 (404) T Consensus 27 iv~ilGpNGaGKSTllk~i~G~l~p~~-G~i~~~g~~------~~~~pq~~--~LSGGqrQRv~iAral~~~p~lllLDE 97 (177) T cd03222 27 VIGIVGPNGTGKTTAVKILAGQLIPNG-DNDEWDGIT------PVYKPQYI--DLSGGELQRVAIAAALLRNATFYLFDE 97 (177) T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCC-CCEEECCCC------EECCCCCC--CCCHHHHHHHHHHHHHHCCCCEEEECC T ss_conf 999989999999999999968867889-946666861------22155515--079899999999999823999999748 Q ss_pred EE-ECCCHHHHHHHHHHHHHHHCC-CEEEEECC Q ss_conf 32-047135888999999998549-68998178 Q gi|254781047|r 148 FM-ITNIADAIILSRLFAALFSHG-CIIVMTSN 178 (404) Q Consensus 148 F~-V~DiaDAmil~rl~~~lf~~g-v~lV~TSN 178 (404) T Consensus 98 Pts~LD~~~r~~i~~~ik~l~~~~~~Tvl~vsH 130 (177) T cd03222 98 PSAYLDIEQRLNAARAIRRLSEEGKKTALVVEH 130 (177) T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECC T ss_conf 865389999999999999999965977999858 |
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >CHL00095 clpC Clp protease ATP binding subunit | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.53 Score=26.42 Aligned_cols=114 Identities=21% Similarity=0.213 Sum_probs=68.1 Q ss_pred CCCCCCE-EEEECCCCCCHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHHCCC----CCCCCCCCCHHHHHHH Q ss_conf 6668864-998888877289999999985781--11468889999999999999971311----2246655780789999 Q gi|254781047|r 62 KYCSMQG-IYLHGDVGQGKSMLMNLFFALVPI--EKKCRLHFYEFMKDVHSRIIMYRKKI----EFGEILESDPIPLVAS 134 (404) Q Consensus 62 ~~~~~kG-lYL~G~VG~GKT~LMdlFy~~l~~--~~K~R~HFh~FM~~ih~~l~~~~~~~----~~~~~~~~dpl~~va~ 134 (404) T Consensus 534 ~~~rPigsFlf~GPTGvGKTElAK~LA~~LFg~e~~liR~DMSEy~E~--hsvsrLIGaPPGYVGy~eGG~--LTeaV-- 607 (823) T CHL00095 534 NPNRPIASFIFCGPTGVGKTELTKALASYFFGSEEAMIRLDMSEYMEK--HTVSKLIGSPPGYVGYNEGGQ--LTEAV-- 607 (823) T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCC--CCHHHHCCCCCCCCCCCCCCC--HHHHH-- T ss_conf 899974689987899887799999999997478202588535101554--207674589987667787882--01988-- Q ss_pred HHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHC--------------CCEEEEECCCCHHHHHC Q ss_conf 99613879998423204713588899999999854--------------96899817868677523 Q gi|254781047|r 135 SIALESRVLCFDEFMITNIADAIILSRLFAALFSH--------------GCIIVMTSNFIPENLYK 186 (404) Q Consensus 135 ~l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~--------------gv~lV~TSN~~P~dLY~ 186 (404) T Consensus 608 -rr~PysVvLfDEIEKAH---pdV~nilLQ-vlDdG~LtD~~Gr~vdF~NtIIImTSNlGs~~i~~ 668 (823) T CHL00095 608 -RKKPYTVVLFDEIEKAH---PDIFNLLLQ-ILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIEK 668 (823) T ss_pred -HCCCCEEEEECHHHHCC---HHHHHHHHH-HCCCCCCCCCCCCEEECEEEEEEECCCCCHHHHHH T ss_conf -71998699862131138---899998876-51688434899998843103999716505588874 |
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.029 Score=34.40 Aligned_cols=111 Identities=17% Similarity=0.213 Sum_probs=68.6 Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC-----------------CCCCCCCHHHH Q ss_conf 9988888772899999999857811146888999999999999997131122-----------------46655780789 Q gi|254781047|r 69 IYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEF-----------------GEILESDPIPL 131 (404) Q Consensus 69 lYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~-----------------~~~~~~dpl~~ 131 (404) T Consensus 29 ~gl~G~NGaGKSTLl~~i~Gl~~p~~-G~i~i~g~--~~~~~~~~~~~~ig~v~q~~~l~~~ltv~e~l~LSgG~kqrv~ 105 (173) T cd03230 29 YGLLGPNGAGKTTLIKIILGLLKPDS-GEIKVLGK--DIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQRLA 105 (173) T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCC-CEEEECCE--ECCCCHHHHHCCEEEEECCCCCCCCCCHHHHHHCCHHHHHHHH T ss_conf 99987899799999999976857787-88999999--9886848886578999568766712677898633989999999 Q ss_pred HHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHH Q ss_conf 99999613879998423-2047135888999999998549689981786867 Q gi|254781047|r 132 VASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSHGCIIVMTSNFIPE 182 (404) Q Consensus 132 va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~ 182 (404) T Consensus 106 ia~al~~~p~lllLDEPt~gLD~~~~~~i~~~i~~l~~~g~tvi~~tH~l~~ 157 (173) T cd03230 106 LAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEE 157 (173) T ss_pred HHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHH T ss_conf 9999964999999908865799999999999999999689999999283899 |
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.043 Score=33.35 Aligned_cols=122 Identities=22% Similarity=0.242 Sum_probs=59.6 Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHH---HHCCCCCCCCCCCCHHHHHH------ Q ss_conf 688649988888772899999999857811-14688899999999999999---71311224665578078999------ Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIE-KKCRLHFYEFMKDVHSRIIM---YRKKIEFGEILESDPIPLVA------ 133 (404) Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~-~K~R~HFh~FM~~ih~~l~~---~~~~~~~~~~~~~dpl~~va------ 133 (404) T Consensus 196 AGgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~-~~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p 274 (490) T COG0606 196 AGGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLA-GDLHEGCPLKIHRPFRAPHHSASLAALVGGGGVP 274 (490) T ss_pred HCCCCEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHC-CCCCCCCCCCEECCCCCCCCCCHHHHHHCCCCCC T ss_conf 438867875699886567642310259998708889998887635-4324678641107876887402288973789988 Q ss_pred --HHH-HCCCCEEEEEEEE-ECCCHHHHHHHHHHHHHHHCCCE----------------EEEECCCCHHHHHCCCCCH Q ss_conf --999-6138799984232-04713588899999999854968----------------9981786867752387405 Q gi|254781047|r 134 --SSI-ALESRVLCFDEFM-ITNIADAIILSRLFAALFSHGCI----------------IVMTSNFIPENLYKDEINR 191 (404) Q Consensus 134 --~~l-~~~~~lLCfDEF~-V~DiaDAmil~rl~~~lf~~gv~----------------lV~TSN~~P~dLY~~GLqR 191 (404) T Consensus 275 ~PGeIsLAH~GVLFLDElpef~~----~iLe~LR~PL-E~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~ 347 (490) T COG0606 275 RPGEISLAHNGVLFLDELPEFKR----SILEALREPL-ENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRR 347 (490) T ss_pred CCCCEEEECCCEEEEECCCHHHH----HHHHHHHCCC-CCCCEEEEECCCEEEEEEEEEEHHHCCCCCCCCCCCCCCC T ss_conf 98735430387788614421059----9999973741-2581799975871687212677522399976478887777 |
|
| >KOG2543 consensus | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.65 Score=25.83 Aligned_cols=121 Identities=21% Similarity=0.255 Sum_probs=68.1 Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCHH---HH--HHHHHHHHHHHHHHHHHHCCCCCCCCCC------CCHHHHH Q ss_conf 68864998888877289999999985781114---68--8899999999999999713112246655------7807899 Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFALVPIEKK---CR--LHFYEFMKDVHSRIIMYRKKIEFGEILE------SDPIPLV 132 (404) Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K---~R--~HFh~FM~~ih~~l~~~~~~~~~~~~~~------~dpl~~v 132 (404) T Consensus 28 ~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle---~IL~~~~~~d~dg~~~~~~~en~~d~i~~l 104 (438) T KOG2543 28 TIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLE---KILNKSQLADKDGDKVEGDAENFSDFIYLL 104 (438) T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEHHHHCCHHHHHH---HHHHHHCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 66515799614787455999999860378630541577516799999---999873567874055542799999999999 Q ss_pred HH--HHHC--CCCEEEEEEEEECCCHHHHHHHHHHH--HHHHCCCEEEEECCCCHHHHHCC Q ss_conf 99--9961--38799984232047135888999999--99854968998178686775238 Q gi|254781047|r 133 AS--SIAL--ESRVLCFDEFMITNIADAIILSRLFA--ALFSHGCIIVMTSNFIPENLYKD 187 (404) Q Consensus 133 a~--~l~~--~~~lLCfDEF~V~DiaDAmil~rl~~--~lf~~gv~lV~TSN~~P~dLY~~ 187 (404) T Consensus 105 ~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~~y~~ 165 (438) T KOG2543 105 VQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEKQYLI 165 (438) T ss_pred HHHHHHHCCCCEEEEEECCHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHC T ss_conf 8447764467449999747776630650788999989987377736999832666777521 |
|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.58 Score=26.19 Aligned_cols=110 Identities=9% Similarity=0.138 Sum_probs=56.5 Q ss_pred EEEECCCCCCHHHHHHHHHHHCCCCH-H-----HHHHH------HHHHHHHHHHHHH----------------------- Q ss_conf 99888887728999999998578111-4-----68889------9999999999999----------------------- Q gi|254781047|r 69 IYLHGDVGQGKSMLMNLFFALVPIEK-K-----CRLHF------YEFMKDVHSRIIM----------------------- 113 (404) Q Consensus 69 lYL~G~VG~GKT~LMdlFy~~l~~~~-K-----~R~HF------h~FM~~ih~~l~~----------------------- 113 (404) T Consensus 28 v~liGpNGaGKSTLlk~l~Gll~p~~G~I~~~g~~i~~~pq~~~~~~~~tv~~~l~~~~~~~~~~~~~~~e~~~~l~l~~ 107 (246) T cd03237 28 IGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQ 107 (246) T ss_pred EEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCHH T ss_conf 99997999769999999977878886079989820576874332577727999999886431212799999998849956 Q ss_pred HHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEE-ECCCHHHHHHHHHHHHHHH-CCCEEEEECC Q ss_conf 713112246655780789999996138799984232-0471358889999999985-4968998178 Q gi|254781047|r 114 YRKKIEFGEILESDPIPLVASSIALESRVLCFDEFM-ITNIADAIILSRLFAALFS-HGCIIVMTSN 178 (404) Q Consensus 114 ~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCfDEF~-V~DiaDAmil~rl~~~lf~-~gv~lV~TSN 178 (404) T Consensus 108 ~~~r~~~~LSGGqkQRv~iA~aL~~~p~ilLLDEPts~LD~~~~~~i~~~i~~l~~~~~~Tvi~VtH 174 (246) T cd03237 108 ILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEH 174 (246) T ss_pred HHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECC T ss_conf 7648700289859999999999841999999848987689999999999999999867989999837 |
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK10865 protein disaggregation chaperone; Provisional | Back alignment and domain information |
|---|
Probab=93.12 E-value=0.6 Score=26.09 Aligned_cols=113 Identities=19% Similarity=0.231 Sum_probs=67.9 Q ss_pred CCCCCCCEEEEE-CCCCCCHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHHHHCCC----CCCCCCCCCHHHHHH Q ss_conf 666688649988-888772899999999857811--1468889999999999999971311----224665578078999 Q gi|254781047|r 61 RKYCSMQGIYLH-GDVGQGKSMLMNLFFALVPIE--KKCRLHFYEFMKDVHSRIIMYRKKI----EFGEILESDPIPLVA 133 (404) Q Consensus 61 ~~~~~~kGlYL~-G~VG~GKT~LMdlFy~~l~~~--~K~R~HFh~FM~~ih~~l~~~~~~~----~~~~~~~~dpl~~va 133 (404) T Consensus 592 ~dp~rPiGsFLFlGPTGVGKTElAK~LA~~LF~~e~~liriDMSEy~E~-h-sVSrLiGaPPGYVGy~eGG---~LTeaV 666 (857) T PRK10865 592 SDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEK-H-SVSRLVGAPPGYVGYEEGG---YLTEAV 666 (857) T ss_pred CCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCHHHEEEECCHHHCCC-H-HHHHHCCCCCCCCCCCCCC---CHHHHH T ss_conf 9999973899986898788899999999998389334256253321130-1-2767558998766757788---110999 Q ss_pred HHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHC--------------CCEEEEECCCCHHHH Q ss_conf 999613879998423204713588899999999854--------------968998178686775 Q gi|254781047|r 134 SSIALESRVLCFDEFMITNIADAIILSRLFAALFSH--------------GCIIVMTSNFIPENL 184 (404) Q Consensus 134 ~~l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~--------------gv~lV~TSN~~P~dL 184 (404) T Consensus 667 --Rr~PySVvLfDEIEKA---HpdV~nilLQ-vlD~G~LtD~~Gr~vdF~NtIIImTSN~Gs~~i 725 (857) T PRK10865 667 --RRRPYSVILLDEVEKA---HPDVFNILLQ-VLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLI 725 (857) T ss_pred --HHCCCEEEEEHHHHHH---CHHHHHHHHH-HHCCCEEECCCCCEEEEEEEEEEECCCHHHHHH T ss_conf --8198778863257663---8589999998-703683207999888513348996462336999 |
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.41 Score=27.13 Aligned_cols=106 Identities=16% Similarity=0.246 Sum_probs=59.1 Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHH-----------HHHH--HHHHHHHH-HHCCCCCCCCCCCCHHHH Q ss_conf 864998888877289999999985781114688899-----------9999--99999999-713112246655780789 Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFY-----------EFMK--DVHSRIIM-YRKKIEFGEILESDPIPL 131 (404) Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh-----------~FM~--~ih~~l~~-~~~~~~~~~~~~~dpl~~ 131 (404) T Consensus 27 Ge~v~i~G~sGsGKSTLl~~l~Gl~~~~~-G~i~~~~~~~i~~v~Q~~~l~~~tl~e~l~~p~~~~LSG----GqkQRva 101 (166) T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWGS-GRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSG----GEQQRLA 101 (166) T ss_pred CCEEEEECCCCCCHHHHHHHHCCCCCCCC-CEEEECCCCCEEEECCCCCCCCCCHHHHHHCCCCCCCCH----HHHHHHH T ss_conf 99999995899988999999869876998-679976998799985646658875999963615467899----9999999 Q ss_pred HHHHHHCCCCEEEEEEEE-ECCCHHHHHHHHHHHHHHHCCCEEEEECCC Q ss_conf 999996138799984232-047135888999999998549689981786 Q gi|254781047|r 132 VASSIALESRVLCFDEFM-ITNIADAIILSRLFAALFSHGCIIVMTSNF 179 (404) Q Consensus 132 va~~l~~~~~lLCfDEF~-V~DiaDAmil~rl~~~lf~~gv~lV~TSN~ 179 (404) T Consensus 102 lARal~~~p~iliLDEpTs~LD~~~---~~~l~~~l~~~~~Tvi~VtH~ 147 (166) T cd03223 102 FARLLLHKPKFVFLDEATSALDEES---EDRLYQLLKELGITVISVGHR 147 (166) T ss_pred HHHHHHCCCCEEEECCCCCCCCHHH---HHHHHHHHHHCCCEEEEEECC T ss_conf 9999964999999758533289999---999999999779989999434 |
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=92.64 E-value=0.76 Score=25.42 Aligned_cols=115 Identities=19% Similarity=0.223 Sum_probs=65.2 Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCH---------------HHHHHHHHH-----H---------------HHHHHHHH Q ss_conf 499888887728999999998578111---------------468889999-----9---------------99999999 Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPIEK---------------KCRLHFYEF-----M---------------KDVHSRII 112 (404) Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~~~---------------K~R~HFh~F-----M---------------~~ih~~l~ 112 (404) T Consensus 40 iv~LiG~nGaGKSTLlr~i~Gl~~p~~G~I~~~~~~i~~~~~~i~~vfQ~~~l~~~~tV~eni~~gl~~~~~~~~~e~l~ 119 (257) T PRK11247 40 FVAVVGRSGCGKSTLLRLLAGLETPTAGDLLAGTAPLAEAQEDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALA 119 (257) T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHHHHHCEEEEECCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHH T ss_conf 99999899888999999996589888870898987554431100799325644767789999863214106999999999 Q ss_pred HHH-----CCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHH-HCCCEEEEECCCCHH Q ss_conf 971-----311224665578078999999613879998423-2047135888999999998-549689981786867 Q gi|254781047|r 113 MYR-----KKIEFGEILESDPIPLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALF-SHGCIIVMTSNFIPE 182 (404) Q Consensus 113 ~~~-----~~~~~~~~~~~dpl~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf-~~gv~lV~TSN~~P~ 182 (404) T Consensus 120 ~vgL~~~~~~~p~~LSGGqkQRvaiAraL~~~P~lLlLDEPtsgLD~~~~~~i~~ll~~L~~e~g~TIi~vTHdl~e 196 (257) T PRK11247 120 AVGLADRANEWPAALSGGQKQRVALARALIHRPRLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSE 196 (257) T ss_pred HCCCCHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHH T ss_conf 85991355369444899999999999998459999998098765799999999999999999609899998879999 |
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=91.68 E-value=1.1 Score=24.39 Aligned_cols=114 Identities=22% Similarity=0.266 Sum_probs=66.9 Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCC-------HHHH-------HHHH--------HHHH--------HHHHHHHHHHCC Q ss_conf 49988888772899999999857811-------1468-------8899--------9999--------999999997131 Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPIE-------KKCR-------LHFY--------EFMK--------DVHSRIIMYRKK 117 (404) Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~~-------~K~R-------~HFh--------~FM~--------~ih~~l~~~~~~ 117 (404) T Consensus 32 i~~LiGpNGaGKSTLlk~I~Gl~~p~~G~I~~~~~~~igyvpq~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 111 (251) T PRK09544 32 ILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAG 111 (251) T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCEEECCCHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCC T ss_conf 99999899988999999996688898608999994026204377621876218999986327665389999999873852 Q ss_pred -----CCCCCCCCCCHHHHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHHHC-CCEEEEECCCCH Q ss_conf -----1224665578078999999613879998423-204713588899999999854-968998178686 Q gi|254781047|r 118 -----IEFGEILESDPIPLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALFSH-GCIIVMTSNFIP 181 (404) Q Consensus 118 -----~~~~~~~~~dpl~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf~~-gv~lV~TSN~~P 181 (404) T Consensus 112 ~~~~~~~~~LSGGq~QRv~iAraL~~~P~lLiLDEPTsgLD~~~~~~i~~li~~L~~e~g~til~vtHDl~ 182 (251) T PRK09544 112 HLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH 182 (251) T ss_pred HHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH T ss_conf 24326544589999999999999974999899809864689999999999999999832989999906899 |
|
| >cd01882 BMS1 Bms1 | Back alignment and domain information |
|---|
Probab=91.60 E-value=0.22 Score=28.80 Aligned_cols=97 Identities=23% Similarity=0.188 Sum_probs=55.0 Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHCC--------------CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC Q ss_conf 6666886499888887728999999998578--------------11146888999999999999997131122466557 Q gi|254781047|r 61 RKYCSMQGIYLHGDVGQGKSMLMNLFFALVP--------------IEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILES 126 (404) Q Consensus 61 ~~~~~~kGlYL~G~VG~GKT~LMdlFy~~l~--------------~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~ 126 (404) T Consensus 34 ~~epPP~vVavvGPpgvGKtTLiksLvk~ytk~~l~~i~GPiTvvs~K~rRiTfiEc~nDi~smiD-------------- 99 (225) T cd01882 34 PEEPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPITVVTGKKRRLTFIECPNDINAMID-------------- 99 (225) T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCEEEEEEECCCHHHHHHH-------------- T ss_conf 789999699998989977889999999998544375578887999468426899974860999987-------------- Q ss_pred CHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHH Q ss_conf 80789999996138799984232047135888999999998549689981786867 Q gi|254781047|r 127 DPIPLVASSIALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPE 182 (404) Q Consensus 127 dpl~~va~~l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~ 182 (404) T Consensus 100 --~AKv-----ADlVLl~iD~----s~GfEmEtfEfLnilq~hG~PkV~GVltHlD 144 (225) T cd01882 100 --IAKV-----ADLVLLLIDA----SFGFEMETFEFLNILQVHGFPRVMGVLTHLD 144 (225) T ss_pred --HHHH-----HHEEEEEECC----CCCEEEEHHHHHHHHHHCCCCCEEEEEECCC T ss_conf --8876-----4336888616----6553520899999999759994378854431 |
Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes. |
| >KOG0735 consensus | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00068 Score=44.77 Aligned_cols=27 Identities=30% Similarity=0.358 Sum_probs=18.2 Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCC Q ss_conf 886499888887728999999998578 Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVP 91 (404) Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~ 91 (404) T Consensus 700 ~~~giLLyGppGcGKT~la~a~a~~~~ 726 (952) T KOG0735 700 LRTGILLYGPPGCGKTLLASAIASNSN 726 (952) T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCC T ss_conf 655458877999857888888885378 |
|
| >TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.012 Score=36.95 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=11.9 Q ss_pred EEEECCCCCCHHHHHHHHHHH Q ss_conf 998888877289999999985 Q gi|254781047|r 69 IYLHGDVGQGKSMLMNLFFAL 89 (404) Q Consensus 69 lYL~G~VG~GKT~LMdlFy~~ 89 (404) T Consensus 211 PiLVGepGVGKTAIvEGLA~r 231 (852) T TIGR03345 211 PILTGEAGVGKTAVVEGLALR 231 (852) T ss_pred CEEECCCCCCHHHHHHHHHHH T ss_conf 746579998799999999999 |
Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. |
| >KOG0737 consensus | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.00075 Score=44.52 Aligned_cols=25 Identities=36% Similarity=0.489 Sum_probs=21.0 Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHH Q ss_conf 8864998888877289999999985 Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFAL 89 (404) Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~ 89 (404) T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Ake 150 (386) T KOG0737 126 PPKGILLYGPPGTGKTMLAKAIAKE 150 (386) T ss_pred CCCCCEECCCCCCHHHHHHHHHHHH T ss_conf 8643051189982188999999987 |
|
| >pfam01637 Arch_ATPase Archaeal ATPase | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.044 Score=33.26 Aligned_cols=25 Identities=24% Similarity=0.239 Sum_probs=21.9 Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCC Q ss_conf 4998888877289999999985781 Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPI 92 (404) Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~ 92 (404) T Consensus 22 ~ivi~G~RR~GKTsLi~~~~~~~~~ 46 (223) T pfam01637 22 IIVVYGPRRCGKTALLREFLEELRE 46 (223) T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC T ss_conf 8999868878799999999986334 |
This family contain a conserved P-loop motif that is involved in binding ATP. This family is almost exclusively found in archaebacteria and particularly in Methanococcus jannaschii that encodes sixteen members of this family. |
| >KOG0729 consensus | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0057 Score=38.92 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=21.4 Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH Q ss_conf 68864998888877289999999985 Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFAL 89 (404) Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~ 89 (404) T Consensus 209 dPPKGvllyGPPGtGKTL~ARAVANR 234 (435) T KOG0729 209 DPPKGVLLYGPPGTGKTLCARAVANR 234 (435) T ss_pred CCCCCEEEECCCCCCHHHHHHHHHCC T ss_conf 99873378689998610899987456 |
|
| >pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0065 Score=38.57 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=20.1 Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC Q ss_conf 499888887728999999998578 Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVP 91 (404) Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~ 91 (404) T Consensus 52 h~lf~GPPG~GKTTlAriiAk~~~ 75 (234) T pfam05496 52 HVLLYGPPGLGKTTLANIIANEMG 75 (234) T ss_pred EEEEECCCCCCHHHHHHHHHHHHC T ss_conf 278878999988899999998408 |
The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein. |
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.013 Score=36.69 Aligned_cols=28 Identities=21% Similarity=0.355 Sum_probs=22.4 Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCC Q ss_conf 8864998888877289999999985781 Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPI 92 (404) Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~ 92 (404) T Consensus 62 ~Ge~vaIVG~sGSGKSTLl~lL~gl~~p 89 (282) T cd03291 62 KGEMLAITGSTGSGKTSLLMLILGELEP 89 (282) T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCC T ss_conf 9999999999998199999999578727 |
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.051 Score=32.88 Aligned_cols=26 Identities=35% Similarity=0.653 Sum_probs=22.0 Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCC Q ss_conf 64998888877289999999985781 Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPI 92 (404) Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~ 92 (404) T Consensus 29 ei~~l~G~NGaGKTTLlk~i~Gl~~p 54 (206) T PRK13539 29 EALVLTGPNGSGKTTLLRLLAGLLPP 54 (206) T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC T ss_conf 49999899999899999999588788 |
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.04 Score=33.57 Aligned_cols=25 Identities=36% Similarity=0.576 Sum_probs=21.2 Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCC Q ss_conf 4998888877289999999985781 Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPI 92 (404) Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~ 92 (404) T Consensus 32 ~v~ivG~sGsGKSTLl~ll~gl~~p 56 (221) T cd03244 32 KVGIVGRTGSGKSSLLLALFRLVEL 56 (221) T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC T ss_conf 9999999999899999999679718 |
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.16 Score=29.71 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=18.8 Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC Q ss_conf 499888887728999999998578 Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVP 91 (404) Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~ 91 (404) T Consensus 33 i~~liG~NGaGKSTLl~~i~G~~~ 56 (237) T PRK11614 33 IVTLIGANGAGKTTLLGTLCGDPR 56 (237) T ss_pred EEEEECCCCCCHHHHHHHHHCCCC T ss_conf 999987999759999999967998 |
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.048 Score=33.02 Aligned_cols=26 Identities=35% Similarity=0.521 Sum_probs=21.8 Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC Q ss_conf 86499888887728999999998578 Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVP 91 (404) Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~ 91 (404) T Consensus 30 G~~v~ivG~sGsGKSTLl~ll~gl~~ 55 (220) T cd03245 30 GEKVAIIGRVGSGKSTLLKLLAGLYK 55 (220) T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCC T ss_conf 99999999999859999999967254 |
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.13 Score=30.31 Aligned_cols=27 Identities=26% Similarity=0.502 Sum_probs=22.7 Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCC Q ss_conf 864998888877289999999985781 Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPI 92 (404) Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~ 92 (404) T Consensus 26 Ge~~~l~G~NGsGKSTLlk~i~Gl~~p 52 (201) T cd03231 26 GEALQVTGPNGSGKTTLLRILAGLSPP 52 (201) T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC T ss_conf 959999999999999999999667788 |
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.056 Score=32.63 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=21.7 Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCC Q ss_conf 64998888877289999999985781 Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPI 92 (404) Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~ 92 (404) T Consensus 41 e~vaIvG~sGsGKSTL~~ll~gl~~p 66 (226) T cd03248 41 EVTALVGPSGSGKSTVVALLENFYQP 66 (226) T ss_pred CEEEEECCCCCHHHHHHHHHHCCCCC T ss_conf 99999999998499999999645467 |
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.21 Score=29.02 Aligned_cols=27 Identities=33% Similarity=0.476 Sum_probs=22.2 Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCC Q ss_conf 649988888772899999999857811 Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPIE 93 (404) Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~~ 93 (404) T Consensus 28 ~i~~l~G~NGaGKSTLlkli~Gl~~p~ 54 (200) T PRK13540 28 GLLHLKGSNGAGKTTLLKLIAGLLNPE 54 (200) T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCC T ss_conf 799998899987999999997785889 |
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.061 Score=32.37 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=21.4 Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC Q ss_conf 86499888887728999999998578 Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVP 91 (404) Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~ 91 (404) T Consensus 29 G~~iaIvG~sGsGKSTLl~ll~gl~~ 54 (238) T cd03249 29 GKTVALVGSSGCGKSTVVSLLERFYD 54 (238) T ss_pred CCEEEEECCCCCCHHHHHHHHHHCCC T ss_conf 99999999999989999999823861 |
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK11388 DNA-binding transcriptional regulator DhaR; Provisional | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.042 Score=33.38 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=16.7 Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC Q ss_conf 86499888887728999999998578 Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVP 91 (404) Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~ 91 (404) T Consensus 348 ~~pVLI~GE~GtGKe~lAraIH~~S~ 373 (639) T PRK11388 348 SFPILLCGEEGVGKALLAQAIHNESE 373 (639) T ss_pred CCCEEEECCCCCCHHHHHHHHHHCCC T ss_conf 99689889898109999999995577 |
|
| >KOG0741 consensus | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.009 Score=37.66 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=18.6 Q ss_pred CCCCEEEEECCCCCCHHHHHHH Q ss_conf 6886499888887728999999 Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNL 85 (404) Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdl 85 (404) T Consensus 254 ~HVKGiLLyGPPGTGKTLiARq 275 (744) T KOG0741 254 KHVKGILLYGPPGTGKTLIARQ 275 (744) T ss_pred CCEEEEEEECCCCCCHHHHHHH T ss_conf 1123578877999870189999 |
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.058 Score=32.53 Aligned_cols=25 Identities=28% Similarity=0.583 Sum_probs=20.9 Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCC Q ss_conf 6499888887728999999998578 Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVP 91 (404) Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~ 91 (404) T Consensus 28 e~v~ivG~sGsGKSTLl~ll~gl~~ 52 (236) T cd03253 28 KKVAIVGPSGSGKSTILRLLFRFYD 52 (236) T ss_pred CEEEEECCCCCCHHHHHHHHCCCCC T ss_conf 9999999999989999999743854 |
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.071 Score=31.94 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=20.9 Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCC Q ss_conf 6499888887728999999998578 Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVP 91 (404) Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~ 91 (404) T Consensus 29 ~~vaivG~sGsGKSTll~ll~gl~~ 53 (237) T cd03252 29 EVVGIVGRSGSGKSTLTKLIQRFYV 53 (237) T ss_pred CEEEEECCCCCHHHHHHHHHHCCCC T ss_conf 9999999999859999999967765 |
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.11 Score=30.76 Aligned_cols=27 Identities=26% Similarity=0.454 Sum_probs=22.2 Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCC Q ss_conf 864998888877289999999985781 Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPI 92 (404) Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~ 92 (404) T Consensus 29 Ge~vaivG~sGsGKSTLl~ll~gl~~p 55 (229) T cd03254 29 GETVAIVGPTGAGKTTLINLLMRFYDP 55 (229) T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCC T ss_conf 999999999998099999999668667 |
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.13 Score=30.23 Aligned_cols=27 Identities=33% Similarity=0.450 Sum_probs=21.6 Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCC Q ss_conf 864998888877289999999985781 Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPI 92 (404) Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~ 92 (404) T Consensus 28 Ge~i~IvG~sGsGKSTLl~ll~gl~~p 54 (234) T cd03251 28 GETVALVGPSGSGKSTLVNLIPRFYDV 54 (234) T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCC T ss_conf 999999989998299999999667667 |
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0739 consensus | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.038 Score=33.67 Aligned_cols=28 Identities=32% Similarity=0.356 Sum_probs=21.8 Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHC Q ss_conf 6688649988888772899999999857 Q gi|254781047|r 63 YCSMQGIYLHGDVGQGKSMLMNLFFALV 90 (404) Q Consensus 63 ~~~~kGlYL~G~VG~GKT~LMdlFy~~l 90 (404) T Consensus 163 R~PwrgiLLyGPPGTGKSYLAKAVATEA 190 (439) T KOG0739 163 RKPWRGILLYGPPGTGKSYLAKAVATEA 190 (439) T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHC T ss_conf 7754257886799975779999987414 |
|
| >KOG0738 consensus | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.026 Score=34.76 Aligned_cols=27 Identities=22% Similarity=0.410 Sum_probs=22.9 Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCC Q ss_conf 886499888887728999999998578 Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVP 91 (404) Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~ 91 (404) T Consensus 244 PWkgvLm~GPPGTGKTlLAKAvATEc~ 270 (491) T KOG0738 244 PWKGVLMVGPPGTGKTLLAKAVATECG 270 (491) T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHC T ss_conf 530005567999747899999988616 |
|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.061 Score=32.36 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=16.9 Q ss_pred EEEECCCCCCHHHHH-HHHHHHCC Q ss_conf 998888877289999-99998578 Q gi|254781047|r 69 IYLHGDVGQGKSMLM-NLFFALVP 91 (404) Q Consensus 69 lYL~G~VG~GKT~LM-dlFy~~l~ 91 (404) T Consensus 2 tLi~G~pGsGKT~~a~qfl~~~a~ 25 (187) T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA 25 (187) T ss_pred EEEEECCCCCHHHHHHHHHHHHHH T ss_conf 158768999999999999999987 |
A related protein is found in archaea. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.27 Score=28.23 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=22.0 Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCC Q ss_conf 864998888877289999999985781 Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPI 92 (404) Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~ 92 (404) T Consensus 31 Ge~~~IvG~sGsGKSTLl~~i~G~~~~ 57 (204) T cd03250 31 GELVAIVGPVGSGKSSLLSALLGELEK 57 (204) T ss_pred CCEEEEECCCCCCHHHHHHHHCCCCCC T ss_conf 989999999998589999998189525 |
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.33 Score=27.69 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=20.2 Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC Q ss_conf 499888887728999999998578 Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVP 91 (404) Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~ 91 (404) T Consensus 27 ~~~iiGpSGsGKSTLlr~i~Gl~~ 50 (235) T cd03299 27 YFVILGPTGSGKSVLLETIAGFIK 50 (235) T ss_pred EEEEECCCCCHHHHHHHHHHCCCC T ss_conf 999999996359999999974999 |
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.42 Score=27.06 Aligned_cols=25 Identities=36% Similarity=0.550 Sum_probs=20.5 Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCC Q ss_conf 4998888877289999999985781 Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPI 92 (404) Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~ 92 (404) T Consensus 29 ~~~lvGpnGaGKSTLl~~i~Gl~~p 53 (255) T PRK11248 29 LLVVLGPSGCGKTTLLNLIAGFVPP 53 (255) T ss_pred EEEEECCCCCHHHHHHHHHHCCCCC T ss_conf 9999999984699999999759988 |
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.43 Score=27.02 Aligned_cols=25 Identities=32% Similarity=0.533 Sum_probs=20.3 Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCC Q ss_conf 4998888877289999999985781 Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPI 92 (404) Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~ 92 (404) T Consensus 28 i~~liG~nGaGKSTLl~~i~Gl~~p 52 (222) T cd03224 28 IVALLGRNGAGKTTLLKTIMGLLPP 52 (222) T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC T ss_conf 9999999998599999999779889 |
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.26 Score=28.35 Aligned_cols=27 Identities=41% Similarity=0.540 Sum_probs=22.8 Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCC Q ss_conf 864998888877289999999985781 Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPI 92 (404) Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~ 92 (404) T Consensus 47 Ge~vaIvG~sGsGKSTL~~ll~gl~~p 73 (257) T cd03288 47 GQKVGICGRTGSGKSSLSLAFFRMVDI 73 (257) T ss_pred CCEEEEECCCCCCHHHHHHHHHHCCCC T ss_conf 999999999998199999999605667 |
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.29 Score=28.09 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=21.2 Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCC Q ss_conf 4998888877289999999985781 Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPI 92 (404) Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~ 92 (404) T Consensus 28 i~~iiG~nGaGKSTLl~~i~Gl~~p 52 (205) T cd03226 28 IIALTGKNGAGKTTLAKILAGLIKE 52 (205) T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC T ss_conf 9999889999899999999568577 |
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >pfam00270 DEAD DEAD/DEAH box helicase | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.49 Score=26.61 Aligned_cols=16 Identities=19% Similarity=0.569 Sum_probs=13.9 Q ss_pred EEEEECCCCCCHHHHH Q ss_conf 4998888877289999 Q gi|254781047|r 68 GIYLHGDVGQGKSMLM 83 (404) Q Consensus 68 GlYL~G~VG~GKT~LM 83 (404) T Consensus 16 ~~iv~~pTGsGKT~~~ 31 (167) T pfam00270 16 DVLVQAPTGSGKTLAF 31 (167) T ss_pred CEEEECCCCCCHHHHH T ss_conf 7899889997589999 |
Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. |
| >pfam09848 DUF2075 Uncharacterized conserved protein (DUF2075) | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.073 Score=31.90 Aligned_cols=21 Identities=38% Similarity=0.706 Sum_probs=16.2 Q ss_pred EEEECCCCCCHHHHH-HHHHHH Q ss_conf 998888877289999-999985 Q gi|254781047|r 69 IYLHGDVGQGKSMLM-NLFFAL 89 (404) Q Consensus 69 lYL~G~VG~GKT~LM-dlFy~~ 89 (404) T Consensus 4 ~~V~G~pGtGKTvv~l~l~~~l 25 (348) T pfam09848 4 FLVTGGPGTGKTVVALNLFAEL 25 (348) T ss_pred EEEECCCCCCHHHHHHHHHHHH T ss_conf 9997779938999999999998 |
This domain, found in various prokaryotic proteins (including putative ATP/GTP binding proteins), has no known function. |
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.26 Score=28.36 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=21.7 Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCC Q ss_conf 4998888877289999999985781 Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPI 92 (404) Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~ 92 (404) T Consensus 29 ~~~l~G~NGaGKSTLl~~l~Gl~~p 53 (204) T PRK13538 29 LVQIEGPNGAGKTSLLRILAGLARP 53 (204) T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC T ss_conf 9999999998599999999768888 |
|
| >TIGR02928 TIGR02928 orc1/cdc6 family replication initiation protein; InterPro: IPR014277 This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.21 Score=28.99 Aligned_cols=30 Identities=17% Similarity=0.342 Sum_probs=23.9 Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCH Q ss_conf 886499888887728999999998578111 Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEK 94 (404) Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~ 94 (404) T Consensus 42 ~P~Ni~iYGkTGtGKT~vt~~v~~~l~~~~ 71 (383) T TIGR02928 42 RPSNIFIYGKTGTGKTAVTKYVMKELEEAA 71 (383) T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHHH T ss_conf 987258878889878899999999999986 |
The proteins in this entry are found exclusively in the archaea. Several members may be found in a genome and interact with each other.. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.73 Score=25.53 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=20.0 Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC Q ss_conf 499888887728999999998578 Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVP 91 (404) Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~ 91 (404) T Consensus 26 ~~~ilGpSGsGKSTLl~li~Gl~~ 49 (211) T cd03298 26 ITAIVGPSGSGKSTLLNLIAGFET 49 (211) T ss_pred EEEEECCCCCHHHHHHHHHHCCCC T ss_conf 999999999559999999976999 |
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG1803 consensus | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.032 Score=34.14 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=19.5 Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCC Q ss_conf 4998888877289999999985781 Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPI 92 (404) Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~ 92 (404) T Consensus 203 l~~I~GPPGTGKT~TlvEiI~qlvk 227 (649) T KOG1803 203 LLIIHGPPGTGKTRTLVEIISQLVK 227 (649) T ss_pred CEEEECCCCCCCEEEHHHHHHHHHH T ss_conf 3575579988840439999999997 |
|
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.77 Score=25.40 Aligned_cols=19 Identities=37% Similarity=0.377 Sum_probs=16.0 Q ss_pred CCEEEEECCCCCCHHHHHH Q ss_conf 8649988888772899999 Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMN 84 (404) Q Consensus 66 ~kGlYL~G~VG~GKT~LMd 84 (404) T Consensus 21 G~~~aIiG~sGsGKSTLl~ 39 (261) T cd03271 21 GVLTCVTGVSGSGKSSLIN 39 (261) T ss_pred CCEEEEECCCCCCHHHHHH T ss_conf 9999998799986999999 |
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=92.87 E-value=0.38 Score=27.36 Aligned_cols=26 Identities=31% Similarity=0.359 Sum_probs=21.6 Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCC Q ss_conf 64998888877289999999985781 Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPI 92 (404) Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~ 92 (404) T Consensus 27 ei~~iiGpnGaGKSTl~~~i~Gl~~p 52 (213) T cd03259 27 EFLALLGPSGCGKTTLLRLIAGLERP 52 (213) T ss_pred CEEEEECCCCCHHHHHHHHHHCCCCC T ss_conf 89999999997399999999759998 |
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0740 consensus | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.047 Score=33.12 Aligned_cols=27 Identities=30% Similarity=0.455 Sum_probs=21.7 Q ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHH Q ss_conf 666688649988888772899999999 Q gi|254781047|r 61 RKYCSMQGIYLHGDVGQGKSMLMNLFF 87 (404) Q Consensus 61 ~~~~~~kGlYL~G~VG~GKT~LMdlFy 87 (404) T Consensus 181 glr~p~rglLLfGPpgtGKtmL~~aiA 207 (428) T KOG0740 181 GLREPVRGLLLFGPPGTGKTMLAKAIA 207 (428) T ss_pred CCCCCCCHHHEECCCCCCHHHHHHHHH T ss_conf 354453111200589884479999998 |
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=92.70 E-value=0.35 Score=27.59 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=21.6 Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCC Q ss_conf 4998888877289999999985781 Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPI 92 (404) Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~ 92 (404) T Consensus 36 ~v~ivG~sGsGKSTLl~ll~g~~~p 60 (207) T cd03369 36 KIGIVGRTGAGKSTLILALFRFLEA 60 (207) T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC T ss_conf 9999999998799999999987288 |
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=92.21 E-value=0.67 Score=25.76 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=20.1 Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCC Q ss_conf 4998888877289999999985781 Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPI 92 (404) Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~ 92 (404) T Consensus 28 ~~~iiGpSGsGKSTllr~i~Gl~~p 52 (232) T cd03300 28 FFTLLGPSGCGKTTLLRLIAGFETP 52 (232) T ss_pred EEEEECCCCCHHHHHHHHHHCCCCC T ss_conf 9999999998399999999779999 |
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0743 consensus | Back alignment and domain information |
|---|
Probab=91.95 E-value=0.27 Score=28.26 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=19.9 Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC Q ss_conf 688649988888772899999999857 Q gi|254781047|r 64 CSMQGIYLHGDVGQGKSMLMNLFFALV 90 (404) Q Consensus 64 ~~~kGlYL~G~VG~GKT~LMdlFy~~l 90 (404) T Consensus 233 awKRGYLLYGPPGTGKSS~IaAmAn~L 259 (457) T KOG0743 233 AWKRGYLLYGPPGTGKSSFIAAMANYL 259 (457) T ss_pred CCCCCCEEECCCCCCHHHHHHHHHHHC T ss_conf 500041204799998889999997205 |
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=91.93 E-value=0.36 Score=27.51 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=20.8 Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC Q ss_conf 499888887728999999998578 Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVP 91 (404) Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~ 91 (404) T Consensus 34 ~~aiiG~NGaGKSTLl~~i~Gll~ 57 (285) T PRK13636 34 VTAILGGNGAGKSTLFQNLNGILK 57 (285) T ss_pred EEEEECCCCCHHHHHHHHHHCCCC T ss_conf 999999999809999999965988 |
|
| >pfam01078 Mg_chelatase Magnesium chelatase, subunit ChlI | Back alignment and domain information |
|---|
Probab=91.91 E-value=0.13 Score=30.30 Aligned_cols=26 Identities=27% Similarity=0.535 Sum_probs=22.5 Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCC Q ss_conf 64998888877289999999985781 Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPI 92 (404) Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~ 92 (404) T Consensus 23 H~lLl~GpPG~GKTmlA~rl~~iLP~ 48 (207) T pfam01078 23 HNLLMIGPPGSGKTMLAKRLPGILPP 48 (207) T ss_pred CCEEEECCCCCCHHHHHHHHHCCCCC T ss_conf 75897889980299999763014899 |
Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. Due to this, it is thought that Mg-chelatase has an important role in channelling inter- mediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weight between 38-42 kDa. |
| >TIGR00150 TIGR00150 conserved hypothetical protein TIGR00150; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop | Back alignment and domain information |
|---|
Probab=91.84 E-value=0.15 Score=29.83 Aligned_cols=27 Identities=30% Similarity=0.482 Sum_probs=24.1 Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCH Q ss_conf 499888887728999999998578111 Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPIEK 94 (404) Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~~~ 94 (404) T Consensus 30 v~~L~GDlGaGKTtl~~G~~~~LG~~~ 56 (147) T TIGR00150 30 VVLLKGDLGAGKTTLVKGLLQGLGITG 56 (147) T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCEE T ss_conf 899732346665899999998379226 |
They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements . . |
| >PRK13407 bchI magnesium chelatase subunit I; Provisional | Back alignment and domain information |
|---|
Probab=91.79 E-value=0.23 Score=28.66 Aligned_cols=28 Identities=36% Similarity=0.695 Sum_probs=24.9 Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCC Q ss_conf 8864998888877289999999985781 Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPI 92 (404) Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~ 92 (404) T Consensus 28 ~~ggvLi~G~~GtgKStlaR~l~~iLP~ 55 (334) T PRK13407 28 GIGGVLVFGDRGTGKSTAVRALAALLPL 55 (334) T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCC T ss_conf 9860899789986599999999972899 |
|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=91.21 E-value=1.2 Score=24.08 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=17.5 Q ss_pred EEEECCCCCCHHHHHHHHHHHC Q ss_conf 9988888772899999999857 Q gi|254781047|r 69 IYLHGDVGQGKSMLMNLFFALV 90 (404) Q Consensus 69 lYL~G~VG~GKT~LMdlFy~~l 90 (404) T Consensus 2 ~li~g~~g~GKttl~~~~~~~~ 23 (165) T cd01120 2 ILVFGPTGSGKTTLALQLALNI 23 (165) T ss_pred EEEECCCCCCHHHHHHHHHHHH T ss_conf 8999899998999999999998 |
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >TIGR00368 TIGR00368 Mg chelatase homolog; InterPro: IPR004482 This family of bacterial proteins are variously described as 'hypothetical protein yifB', 'competence protein', 'hypothetical protein' or 'Mg chelatase-related protein' | Back alignment and domain information |
|---|
Probab=91.13 E-value=0.17 Score=29.59 Aligned_cols=26 Identities=31% Similarity=0.560 Sum_probs=21.5 Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCC Q ss_conf 86499888887728999999998578 Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVP 91 (404) Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~ 91 (404) T Consensus 213 GHNlll~GPPGsGKTmla~r~~giLP 238 (505) T TIGR00368 213 GHNLLLLGPPGSGKTMLASRLQGILP 238 (505) T ss_pred CCCEEEECCCCCCHHHHHHHHHCCCC T ss_conf 56437678249626899987510578 |
These proteins are a subset of the magnesium chelatase, ChlI subunit family and either belong to or show significant homology to the non-peptidase homologs of the MEROPS peptidase family S16 (lon protease family, clan SF), IPR001984 from INTERPRO. . |
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=90.97 E-value=0.84 Score=25.14 Aligned_cols=27 Identities=33% Similarity=0.757 Sum_probs=24.2 Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCC Q ss_conf 649988888772899999999857811 Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPIE 93 (404) Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~~ 93 (404) T Consensus 26 ~nIlIsG~tGSGKTTll~al~~~i~~~ 52 (186) T cd01130 26 KNILISGGTGSGKTTLLNALLAFIPPD 52 (186) T ss_pred CCEEEECCCCCCHHHHHHHHHHHCCCC T ss_conf 989998999998999999999613345 |
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase; InterPro: IPR013380 Proteins in this entry are found in a variety of bacteria, and are predicted to be ATPases involved in type III secretion systems | Back alignment and domain information |
|---|
Probab=90.58 E-value=0.18 Score=29.43 Aligned_cols=27 Identities=26% Similarity=0.267 Sum_probs=22.7 Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCC Q ss_conf 864998888877289999999985781 Q gi|254781047|r 66 MQGIYLHGDVGQGKSMLMNLFFALVPI 92 (404) Q Consensus 66 ~kGlYL~G~VG~GKT~LMdlFy~~l~~ 92 (404) T Consensus 153 GQRiGIFA~aG~GKSTLL~~i~~g~~A 179 (430) T TIGR02546 153 GQRIGIFAGAGVGKSTLLGMIARGASA 179 (430) T ss_pred CCEEEEEECCCCCHHHHHHHHHCCCCC T ss_conf 530578708886166899998618988 |
One example is YscN (P40290 from SWISSPROT) from Yersinia enterocolitica, which is thought to energise the YOP (Yersinia outer protein) secretion system .; GO: 0046961 hydrogen ion transporting ATPase activity rotational mechanism, 0030254 protein secretion by the type III secretion system. |
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=90.42 E-value=1.4 Score=23.78 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=20.9 Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC Q ss_conf 499888887728999999998578 Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVP 91 (404) Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~ 91 (404) T Consensus 30 ~vaiiG~nGsGKSTLl~~l~Gll~ 53 (275) T PRK13639 30 MIAILGPNGAGKSTLFLHFNGILK 53 (275) T ss_pred EEEEECCCCCHHHHHHHHHHCCCC T ss_conf 999999999649999999973989 |
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=90.41 E-value=1.5 Score=23.62 Aligned_cols=24 Identities=29% Similarity=0.545 Sum_probs=18.3 Q ss_pred EEEEECCCCCCHHHHHHHHHHHCC Q ss_conf 499888887728999999998578 Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVP 91 (404) Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~ 91 (404) T Consensus 28 i~~liGpNGaGKSTL~~~i~Gl~~ 51 (230) T TIGR03410 28 VTCVLGRNGVGKTTLLKTLMGLLP 51 (230) T ss_pred EEEEECCCCCHHHHHHHHHHCCCC T ss_conf 999999999409999999977999 |
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >KOG0736 consensus | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0018 Score=42.10 Aligned_cols=184 Identities=18% Similarity=0.243 Sum_probs=93.4 Q ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEE Q ss_conf 49988888772899999999857811146888999999999999997131122466557807899999961387999842 Q gi|254781047|r 68 GIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCFDE 147 (404) Q Consensus 68 GlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCfDE 147 (404) T Consensus 707 GILLYGPPGTGKTLlAKAVATEcsL~------FlS--VKGPELLNMYVGqS------E~NVR~VFerAR~A~PCVIFFDE 772 (953) T KOG0736 707 GILLYGPPGTGKTLLAKAVATECSLN------FLS--VKGPELLNMYVGQS------EENVREVFERARSAAPCVIFFDE 772 (953) T ss_pred EEEEECCCCCCHHHHHHHHHHHCEEE------EEE--ECCHHHHHHHHCCH------HHHHHHHHHHHHCCCCEEEEECC T ss_conf 05887799985579999987543036------785--05889988774301------88899999985446974998312 Q ss_pred EEEC--------CCHHHH--HHHHHHHHH------HHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECC Q ss_conf 3204--------713588--899999999------854968998178686775238740566898999998505089804 Q gi|254781047|r 148 FMIT--------NIADAI--ILSRLFAAL------FSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLD 211 (404) Q Consensus 148 F~V~--------DiaDAm--il~rl~~~l------f~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~ 211 (404) T Consensus 773 LDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRP--DLLDpALLRP------------------- 831 (953) T KOG0736 773 LDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRP--DLLDPALLRP------------------- 831 (953) T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCC--CCCCHHHCCC------------------- T ss_conf 1232756788788654089999999998626667888865998258885--5457655388------------------- Q ss_pred CCCHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECCEEEEECCCCCCCCCCCHHHHHHHHCCHHH Q ss_conf 73112211236783022035302268999999986044446776327636808996122021111019998521024689 Q gi|254781047|r 212 SGQDYRRKEQSILPIYMTPLNSYNRVLMDKLWAHITKGKKSLSLNISTEGGYEIHVPFFCSRVSRFSFFDLCDRPLSAND 291 (404) Q Consensus 212 ~~~DYR~~~~~~~~~y~~p~~~~~~~~l~~~f~~l~~~~~~~~~~i~v~~gR~i~v~~~~~~va~f~F~eLC~~~lg~~D 291 (404) T Consensus 832 ---------GRFDKLvyvG~~~d~esk~-~vL~AlTrk---------------FkL---dedVdL~eiAk~cp~~~TGAD 883 (953) T KOG0736 832 ---------GRFDKLVYVGPNEDAESKL-RVLEALTRK---------------FKL---DEDVDLVEIAKKCPPNMTGAD 883 (953) T ss_pred ---------CCCCEEEEECCCCCHHHHH-HHHHHHHHH---------------CCC---CCCCCHHHHHHHCCCCCCHHH T ss_conf ---------7655248855885678899-999998877---------------028---787679999963896775247 Q ss_pred HHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 9999853788998189878724638999899999998 Q gi|254781047|r 292 FVEIANRFDVVIINDIPLLKEDRKDWIKRFIMLIDVF 328 (404) Q Consensus 292 Yi~Ia~~f~ti~I~~VP~l~~~~~d~arRFI~LID~l 328 (404) T Consensus 884 lYsLCS--------------dA~l~AikR~i~~ie~g 906 (953) T KOG0736 884 LYSLCS--------------DAMLAAIKRTIHDIESG 906 (953) T ss_pred HHHHHH--------------HHHHHHHHHHHHHHHHC T ss_conf 999988--------------99999999997776505 |
|
| >pfam08298 AAA_PrkA PrkA AAA domain | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.075 Score=31.82 Aligned_cols=209 Identities=16% Similarity=0.182 Sum_probs=92.3 Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH-HHHHHCCCCEE Q ss_conf 88649988888772899999999857811146888999999999999997131122466557807899-99996138799 Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLV-ASSIALESRVL 143 (404) Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~v-a~~l~~~~~lL 143 (404) T Consensus 84 ~kqIllL~GPVGsGKSsl~e~LK~glE~y~----------------~Y~i~g-----sPm~e~PL~L~~p~~~r~~l--- 139 (358) T pfam08298 84 RKQILYLLGPVGGGKSSLAERLKKLLELVP----------------IYALKG-----SPVFESPLHLFNPHHLRDIL--- 139 (358) T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHCCCC----------------EEEECC-----CCCCCCCCCCCCHHHHHHHH--- T ss_conf 105899977898775899999998720586----------------488448-----97778985477867759999--- Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCCCCHHHHCCCCC Q ss_conf 98423204713588899999999854968998178686775238740566898999998505089804731122112367 Q gi|254781047|r 144 CFDEFMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLDSGQDYRRKEQSI 223 (404) Q Consensus 144 CfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~~~~DYR~~~~~~ 223 (404) T Consensus 140 -e~~~gi~~~--------------------~i~g~l~P-------~~~~rL~e~~Gd~-~~~~V~r~~~S~~~r~gi~-- 188 (358) T pfam08298 140 -EDEYGIPRR--------------------RLEGDLSP-------WCTKRLEEFGGDI-EKFKVVKIFPSILRQIGIA-- 188 (358) T ss_pred -HHHHCCCHH--------------------HCCCCCCH-------HHHHHHHHHCCCH-HHEEEEEECCCCCCCEEEE-- T ss_conf -987499521--------------------20898898-------9999999938985-5278999555600456899-- Q ss_pred CCEEEECCCHHHHH---HHHH-HHHHHCCCCCCCCCCEEEECCEEEEECCCCCCCCCCCHHHHHHHHCCHHHHHHH---- Q ss_conf 83022035302268---9999-999860444467763276368089961220211110199985210246899999---- Q gi|254781047|r 224 LPIYMTPLNSYNRV---LMDK-LWAHITKGKKSLSLNISTEGGYEIHVPFFCSRVSRFSFFDLCDRPLSANDFVEI---- 295 (404) Q Consensus 224 ~~~y~~p~~~~~~~---~l~~-~f~~l~~~~~~~~~~i~v~~gR~i~v~~~~~~va~f~F~eLC~~~lg~~DYi~I---- 295 (404) T Consensus 189 ---t~~P~D~~nqD~s~L~G~vdi~kl~~~~~~dP~-a-----~~~~G~l~~aNrGl~efvE~~K~~~~~L~~lL~atQE 259 (358) T pfam08298 189 ---KTEPGDENNQDISALVGKVDIRKLEEYSQNDPD-A-----YSYSGALNRANQGLMEFVEMFKAPIKVLHPLLTATQE 259 (358) T ss_pred ---EECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC-E-----ECCCCCEECCCCCCEEEHHHHCCCHHHHHHHHCCCCC T ss_conf ---968999876337787433209877410447984-2-----4567700003577554098761829999998522124 Q ss_pred -----HHHCCEEEECCCCCCCCCCHHHHHHHH------HHHHHHHCCCCCEEEE Q ss_conf -----853788998189878724638999899------9999982289828998 Q gi|254781047|r 296 -----ANRFDVVIINDIPLLKEDRKDWIKRFI------MLIDVFYEHKIGLIIS 338 (404) Q Consensus 296 -----a~~f~ti~I~~VP~l~~~~~d~arRFI------~LID~lYd~kv~Li~s 338 (404) T Consensus 260 ~~i~~~~~~~~i~~D~vI-iahsNe~E~~~f~~~~~~eA~~dR~~~v~vPY~lr 312 (358) T pfam08298 260 GNYNSTEKFSAIPFDGII-LAHSNESEWNSFKSNKNNEAFLDRIVVIKVPYCLR 312 (358) T ss_pred CCCCCCCCCCCEECCEEE-ECCCCHHHHHHHHCCCCCHHHHCCEEEEECCCCCC T ss_conf 622477875603314268-76898499998744864346656379996763267 |
This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain. |
| >KOG0734 consensus | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0087 Score=37.74 Aligned_cols=159 Identities=25% Similarity=0.337 Sum_probs=82.7 Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHH----H Q ss_conf 999999999999861354333225664310246666668864998888877289999999985781114688899----9 Q gi|254781047|r 27 SVVKSFDRLLVDLYKQQKQEQGIFSWLWNLRGIKRKYCSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFY----E 102 (404) Q Consensus 27 ~~i~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh----~ 102 (404) T Consensus 311 EAK~ELeEiVefLkdP-----~kftrLGG--------KLPKGVLLvGPPGTGKTlLARAvAGEA~VP----F-F~~sGSE 372 (752) T KOG0734 311 EAKQELEEIVEFLKDP-----TKFTRLGG--------KLPKGVLLVGPPGTGKTLLARAVAGEAGVP----F-FYASGSE 372 (752) T ss_pred HHHHHHHHHHHHHCCC-----HHHHHCCC--------CCCCCEEEECCCCCCHHHHHHHHHCCCCCC----E-EECCCCC T ss_conf 8999999999986090-----87643147--------588853876899975569999860556897----4-7416620 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEEE----CCCHHH----HHHHHHHHHH----HHCC Q ss_conf 999999999997131122466557807899999961387999842320----471358----8899999999----8549 Q gi|254781047|r 103 FMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCFDEFMI----TNIADA----IILSRLFAAL----FSHG 170 (404) Q Consensus 103 FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCfDEF~V----~DiaDA----mil~rl~~~l----f~~g 170 (404) T Consensus 373 F-----dEm~VGvGArR--------VRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeG 439 (752) T KOG0734 373 F-----DEMFVGVGARR--------VRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEG 439 (752) T ss_pred H-----HHHHHCCCHHH--------HHHHHHHHHHCCCEEEEEECHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 4-----45422014899--------9999999873498599972002205667862778999899999998428676886 Q ss_pred CEEEEECCCCHHHHHCCCCCH-HHH-----------HHHHHHHHHCCEEEECCCCCHHHH Q ss_conf 689981786867752387405-668-----------989999985050898047311221 Q gi|254781047|r 171 CIIVMTSNFIPENLYKDEINR-NVL-----------VSFIELLEKKLEIISLDSGQDYRR 218 (404) Q Consensus 171 v~lV~TSN~~P~dLY~~GLqR-~~F-----------lPfI~~lk~~~~V~~l~~~~DYR~ 218 (404) T Consensus 440 iIvigATNf-pe~LD~-AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~i 497 (752) T KOG0734 440 IIVIGATNF-PEALDK-ALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKI 497 (752) T ss_pred EEEEECCCC-HHHHHH-HHCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCHHH T ss_conf 699951687-455568-7348875533674689773328999999983487656778767 |
|
| >TIGR01448 recD_rel helicase, RecD/TraA family; InterPro: IPR006345 These sequences represent a family similar to RecD, the exodeoxyribonuclease V alpha chain of IPR006344 from INTERPRO | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.01 Score=37.31 Aligned_cols=161 Identities=20% Similarity=0.302 Sum_probs=94.6 Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHH Q ss_conf 05899999999748877898999999999999999861354333225664310246666668864998888877289999 Q gi|254781047|r 4 DLVSSRLISLIQDKKLKYNPAQESVVKSFDRLLVDLYKQQKQEQGIFSWLWNLRGIKRKYCSMQGIYLHGDVGQGKSMLM 83 (404) Q Consensus 4 ~~~~~~y~~~v~~~~i~~D~~Q~~~i~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kGlYL~G~VG~GKT~LM 83 (404) T Consensus 334 ~~~Q~hi~eve~~~~~~l~~~Qk~AL~~~~~-------------------------------~Kv~iLTGGPGTGKtT~t 382 (769) T TIGR01448 334 EDLQKHILEVEKKLRLKLSEEQKEALKTAIQ-------------------------------DKVVILTGGPGTGKTTIT 382 (769) T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-------------------------------CCEEEEECCCCCCHHHHH T ss_conf 8999999986875067706889999999860-------------------------------948998577888616899 Q ss_pred HHHHHH------------------------CCCCH-HHHHHHHHHH----HHHHHHHHHHHCCCCCCCCCCCCHHHHHHH Q ss_conf 999985------------------------78111-4688899999----999999999713112246655780789999 Q gi|254781047|r 84 NLFFAL------------------------VPIEK-KCRLHFYEFM----KDVHSRIIMYRKKIEFGEILESDPIPLVAS 134 (404) Q Consensus 84 dlFy~~------------------------l~~~~-K~R~HFh~FM----~~ih~~l~~~~~~~~~~~~~~~dpl~~va~ 134 (404) T Consensus 383 ~~i~~~~~~~~gl~l~~~~~vndd~~v~LaAPTGrAAkRl--~E~TG~~a~TIHRLlG~-~~~~~~~~k~~~~------- 452 (769) T TIGR01448 383 KAIIELYEELKGLDLDKDDYVNDDLPVVLAAPTGRAAKRL--AEVTGLEALTIHRLLGY-GSDTKSENKNLED------- 452 (769) T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHC--CCCCCCHHHHHHHHHCC-CCCCCCCCHHHCC------- T ss_conf 9999999871687755312456776488737743788851--10026212347786368-9888732110113------- Q ss_pred HHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHC-CCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHH-CCEEEECCC Q ss_conf 99613879998423204713588899999999854-9689981786867752387405668989999985-050898047 Q gi|254781047|r 135 SIALESRVLCFDEFMITNIADAIILSRLFAALFSH-GCIIVMTSNFIPENLYKDEINRNVLVSFIELLEK-KLEIISLDS 212 (404) Q Consensus 135 ~l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~-gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~-~~~V~~l~~ 212 (404) T Consensus 453 --~~~~DL~IvDE~SM---~Dt~L~~~lL~a~P~~a~lllVGD~DQLPSV-~p-G------~VL~DLi~s~~iP~~~LT- 518 (769) T TIGR01448 453 --PIDADLLIVDESSM---VDTWLASSLLAAVPDHARLLLVGDADQLPSV-GP-G------QVLKDLIQSKVIPVTRLT- 518 (769) T ss_pred --CCCCCEEEEECCCH---HHHHHHHHHHHHCCCCCEEEEECCCCCCCCC-CC-C------HHHHHHHHCCCCCEEECC- T ss_conf --47877699814621---8899999998617977779888376888988-64-4------089999846886612121- Q ss_pred CCHHHHCC Q ss_conf 31122112 Q gi|254781047|r 213 GQDYRRKE 220 (404) Q Consensus 213 ~~DYR~~~ 220 (404) T Consensus 519 -~vyRQ~~ 525 (769) T TIGR01448 519 -KVYRQAE 525 (769) T ss_pred -CEEEECC T ss_conf -1124113 |
Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. . |
| >KOG0744 consensus | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00031 Score=46.95 Aligned_cols=148 Identities=19% Similarity=0.231 Sum_probs=74.8 Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHH-----HHCCCC-CCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 999999999861354333225664-----310246-66666886499888887728999999998578111468889999 Q gi|254781047|r 30 KSFDRLLVDLYKQQKQEQGIFSWL-----WNLRGI-KRKYCSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEF 103 (404) Q Consensus 30 ~~L~~L~~~l~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~F 103 (404) T Consensus 135 ~eF~glWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y-~~~~ 213 (423) T KOG0744 135 AEFDGLWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRY-YKGQ 213 (423) T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHEEEECCCC-CCCE T ss_conf 154305788764132899999999999888761788744664148998579998822799999875146523764-4406 Q ss_pred HHHH--HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEE--EEEEEE-----------CCCHHHHHHHH-HHHHHH Q ss_conf 9999--9999997131122466557807899999961387999--842320-----------47135888999-999998 Q gi|254781047|r 104 MKDV--HSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLC--FDEFMI-----------TNIADAIILSR-LFAALF 167 (404) Q Consensus 104 M~~i--h~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLC--fDEF~V-----------~DiaDAmil~r-l~~~lf 167 (404) T Consensus 214 liEinshsLFSKWFsESgKl---V~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlD 290 (423) T KOG0744 214 LIEINSHSLFSKWFSESGKL---VAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLD 290 (423) T ss_pred EEEEEHHHHHHHHHHHHHHH---HHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH T ss_conf 99970467889887121138---999999999997178968999807878889998754137998218999999999899 Q ss_pred ----HCCCEEEEECCCCH Q ss_conf ----54968998178686 Q gi|254781047|r 168 ----SHGCIIVMTSNFIP 181 (404) Q Consensus 168 ----~~gv~lV~TSN~~P 181 (404) T Consensus 291 rlK~~~NvliL~TSNl~~ 308 (423) T KOG0744 291 RLKRYPNVLILATSNLTD 308 (423) T ss_pred HHCCCCCEEEEECCCHHH T ss_conf 860479779996262677 |
|
| >TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.0065 Score=38.54 Aligned_cols=123 Identities=18% Similarity=0.208 Sum_probs=70.9 Q ss_pred HCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 13543332256643102466666688649988888772899999999857811146888999999999999997131122 Q gi|254781047|r 41 KQQKQEQGIFSWLWNLRGIKRKYCSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIMYRKKIEF 120 (404) Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~~~~~~~~ 120 (404) T Consensus 223 elP~~hPe~f~~lG--------iePPkG~ll~GPPGtGktllaka~ane~~a~f-~~inGPeims-------ky~Ge--- 283 (980) T TIGR01243 223 ELPLKHPELFEKLG--------IEPPKGVLLYGPPGTGKTLLAKAVANEAGAYF-IAINGPEIMS-------KYYGE--- 283 (980) T ss_pred HCCCCCHHHHHHCC--------CCCCCCEEEECCCCCCHHHHHHHHHHHCCCEE-EEECCCHHHH-------HHCCC--- T ss_conf 43575647898618--------89987358755898617899999875305517-8850603443-------31363--- Q ss_pred CCCCCCCHHHHHHHHHHCCCC-EEEEEEEEECCCH--------HHHH---HHHHHHHHHHCCCEEEEECCCCHHHHHC Q ss_conf 466557807899999961387-9998423204713--------5888---9999999985496899817868677523 Q gi|254781047|r 121 GEILESDPIPLVASSIALESR-VLCFDEFMITNIA--------DAII---LSRLFAALFSHGCIIVMTSNFIPENLYK 186 (404) Q Consensus 121 ~~~~~~dpl~~va~~l~~~~~-lLCfDEF~V~Dia--------DAmi---l~rl~~~lf~~gv~lV~TSN~~P~dLY~ 186 (404) T Consensus 284 ----~e~~lr~if~eaeenaP~iifideidaiaPkr~e~~Geve~r~v~qlltlmdGlk~rG~v~viGatnrP~a~dP 357 (980) T TIGR01243 284 ----SEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGKVIVIGATNRPDALDP 357 (980) T ss_pred ----CHHHHHHHHHHHHHCCCCEEEEECHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCH T ss_conf ----07899999986530587078741211007641000016889999999999740024872899814688500262 |
It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity. |
| >PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.12 Score=30.58 Aligned_cols=108 Identities=20% Similarity=0.177 Sum_probs=54.1 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHH Q ss_conf 89999999999999998613543332256643102466666688649988888772899999999857811146888999 Q gi|254781047|r 23 PAQESVVKSFDRLLVDLYKQQKQEQGIFSWLWNLRGIKRKYCSMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFYE 102 (404) Q Consensus 23 ~~Q~~~i~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh~ 102 (404) T Consensus 28 iGQ~~i~~~L~v~i~Aak~--------------------r~e~ldH~Ll~GPPGlGKTTLA~iiA~E~~~~~-------- 79 (328) T PRK00080 28 IGQEKVKENLKIFIEAAKK--------------------RGEALDHVLLYGPPGLGKTTLANIIANEMGVNI-------- 79 (328) T ss_pred CCHHHHHHHHHHHHHHHHH--------------------CCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCC-------- T ss_conf 5959999999999999996--------------------499988057658899889999999999868881-------- Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEE Q ss_conf 9999999999971311224665578078999999613879998423204713588899999999854968998 Q gi|254781047|r 103 FMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALESRVLCFDEFMITNIADAIILSRLFAALFSHGCIIVM 175 (404) Q Consensus 103 FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCfDEF~V~DiaDAmil~rl~~~lf~~gv~lV~ 175 (404) T Consensus 80 ---------~~---tsGP~lek~~DL~~iL--t~l~~~dvLFIDEIHRl~~~vEE~---LY~AMEDf~iDi~i 135 (328) T PRK00080 80 ---------RI---TSGPALEKAGDLAALL--TNLEEGDVLFIDEIHRLSPVVEEI---LYPAMEDFRLDIMI 135 (328) T ss_pred ---------EE---CCCCCCCCHHHHHHHH--HHCCCCCEEEEHHHHHCCHHHHHH---HHHHHHHCEEEEEE T ss_conf ---------56---2450016747899999--608878767650653248889988---57987752345786 |
|
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=90.89 E-value=1.3 Score=23.89 Aligned_cols=135 Identities=14% Similarity=0.088 Sum_probs=74.9 Q ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCH Q ss_conf 74887789899999999999999986135433322566431024666666886499888887728999999998578111 Q gi|254781047|r 15 QDKKLKYNPAQESVVKSFDRLLVDLYKQQKQEQGIFSWLWNLRGIKRKYCSMQGIYLHGDVGQGKSMLMNLFFALVPIEK 94 (404) Q Consensus 15 ~~~~i~~D~~Q~~~i~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~ 94 (404) T Consensus 31 ~~~~~~lr~yQ~~al~a~~~~~~~---------------------------~~~gvivlpTGaGKT~va~~~~~~~~~~~ 83 (442) T COG1061 31 VAFEFELRPYQEEALDALVKNRRT---------------------------ERRGVIVLPTGAGKTVVAAEAIAELKRST 83 (442) T ss_pred CCCCCCCHHHHHHHHHHHHHHCCC---------------------------CCCEEEEECCCCCHHHHHHHHHHHHCCCE T ss_conf 235788859999999999962225---------------------------78679996799988999999999826988 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCC------CCCCCCCCCCH-------HHHHHH-----HHHC-CCCEEEEEEEEECCCHH Q ss_conf 46888999999999999997131------12246655780-------789999-----9961-38799984232047135 Q gi|254781047|r 95 KCRLHFYEFMKDVHSRIIMYRKK------IEFGEILESDP-------IPLVAS-----SIAL-ESRVLCFDEFMITNIAD 155 (404) Q Consensus 95 K~R~HFh~FM~~ih~~l~~~~~~------~~~~~~~~~dp-------l~~va~-----~l~~-~~~lLCfDEF~V~DiaD 155 (404) T Consensus 84 Lvlv~~~~L~~Qw~~~~~~~~~~~~~~g~~~~~~-~~~~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~ 162 (442) T COG1061 84 LVLVPTKELLDQWAEALKKFLLLNDEIGIYGGGE-KELEPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPS 162 (442) T ss_pred EEEECCHHHHHHHHHHHHHHCCCCCCCCEECCCC-CCCCCCCEEEEEEHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHH T ss_conf 9997829999999999997348867660336872-335777489998389764155554035666759997524578477 Q ss_pred HHHHHHHHHHHHHCCCEEEEECCCCH Q ss_conf 88899999999854968998178686 Q gi|254781047|r 156 AIILSRLFAALFSHGCIIVMTSNFIP 181 (404) Q Consensus 156 Amil~rl~~~lf~~gv~lV~TSN~~P 181 (404) T Consensus 163 ~~~~~~~~~~~~~----~LGLTATp~ 184 (442) T COG1061 163 YRRILELLSAAYP----RLGLTATPE 184 (442) T ss_pred HHHHHHHHHCCCE----EEEEECCCC T ss_conf 9999997510310----467714872 |
|
| >TIGR01241 FtsH_fam ATP-dependent metallopeptidase HflB; InterPro: IPR005936 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00017 Score=48.57 Aligned_cols=171 Identities=18% Similarity=0.244 Sum_probs=81.8 Q ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHH-----HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCC Q ss_conf 8864998888877289999999985781114688899-----99999999999971311224665578078999999613 Q gi|254781047|r 65 SMQGIYLHGDVGQGKSMLMNLFFALVPIEKKCRLHFY-----EFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSIALE 139 (404) Q Consensus 65 ~~kGlYL~G~VG~GKT~LMdlFy~~l~~~~K~R~HFh-----~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l~~~ 139 (404) T Consensus 91 IPKGVLLvGPPGTGKTLLAKAvAGEA~VP------FF~iSGSdF-----VEMFV-----GVGASRVRDLFeqA----K~n 150 (505) T TIGR01241 91 IPKGVLLVGPPGTGKTLLAKAVAGEAGVP------FFSISGSDF-----VEMFV-----GVGASRVRDLFEQA----KKN 150 (505) T ss_pred CCCCEEEECCCCCCHHHHHHHHHCCCCCC------CEEECCCCE-----EECCC-----CCCCEEHHHHHHHH----HHH T ss_conf 98714731787842467887520258896------247407610-----11120-----56400014457999----971 Q ss_pred CC-EEEEEEEEECCCHHHH--------------HHHHHHHHH----HHCCCEEEEECCCC----HHHHHCCCCCHHHHH- Q ss_conf 87-9998423204713588--------------899999999----85496899817868----677523874056689- Q gi|254781047|r 140 SR-VLCFDEFMITNIADAI--------------ILSRLFAAL----FSHGCIIVMTSNFI----PENLYKDEINRNVLV- 195 (404) Q Consensus 140 ~~-lLCfDEF~V~DiaDAm--------------il~rl~~~l----f~~gv~lV~TSN~~----P~dLY~~GLqR~~Fl- 195 (404) T Consensus 151 APCIIFIDEID--AVGr~RGaG~lGGGnDEREQTLNQLLVEMDGF~~~~gvIv~AATNRPDvLD~ALLRPGRFDRQv~V~ 228 (505) T TIGR01241 151 APCIIFIDEID--AVGRQRGAGELGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVD 228 (505) T ss_pred CCCEEEEECHH--HCCCCCCCCCCCCCCCHHHHHHHHHHEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEECC T ss_conf 89705640100--0033356436676541355433233133178589885799850488411651006878744513458 Q ss_pred -HH----HHHHHHCCEEEECCCCCHHHHCC-----CCCCCE-----------EEECCCHHHHHHHHHHHHHHCCCCCCCC Q ss_conf -89----99998505089804731122112-----367830-----------2203530226899999998604444677 Q gi|254781047|r 196 -SF----IELLEKKLEIISLDSGQDYRRKE-----QSILPI-----------YMTPLNSYNRVLMDKLWAHITKGKKSLS 254 (404) Q Consensus 196 -Pf----I~~lk~~~~V~~l~~~~DYR~~~-----~~~~~~-----------y~~p~~~~~~~~l~~~f~~l~~~~~~~~ 254 (404) T Consensus 229 ~PD~~GR~~IL~VH~~~~kLa~~vdL~~~Ar~TPGfSGADLaNl~NEAALlAAR~n~~~i~~~~~eeA~Drv~~G~ekKs 308 (505) T TIGR01241 229 LPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKTEITMNDIEEAVDRVIAGLEKKS 308 (505) T ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHCCCCCCC T ss_conf 88746789999998548899702477999701568767889999999999986179865628889878776522766788 Q ss_pred CCE Q ss_conf 632 Q gi|254781047|r 255 LNI 257 (404) Q Consensus 255 ~~i 257 (404) T Consensus 309 r~i 311 (505) T TIGR01241 309 RVI 311 (505) T ss_pred CCC T ss_conf 532 |
In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. FtsH is a membrane-anchored ATP-dependent protease that degrades misfolded or misassembled membrane proteins as well as a subset of cytoplasmic regulatory proteins. FtsH is a 647-residue protein of 70 kDa, with two putative transmembrane segments towards its N terminus which anchor the protein to the membrane, giving rise to a periplasmic domain of 70 residues and a cytoplasmic segment of 520 residues containing the ATPase and protease domains . ; GO: 0004222 metalloendopeptidase activity, 0030163 protein catabolic process, 0016020 membrane. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.75 Score=25.45 Aligned_cols=151 Identities=20% Similarity=0.205 Sum_probs=88.4 Q ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCH---------------H---H------------------------HHHHHHHH Q ss_conf 6499888887728999999998578111---------------4---6------------------------88899999 Q gi|254781047|r 67 QGIYLHGDVGQGKSMLMNLFFALVPIEK---------------K---C------------------------RLHFYEFM 104 (404) Q Consensus 67 kGlYL~G~VG~GKT~LMdlFy~~l~~~~---------------K---~------------------------R~HFh~FM 104 (404) T Consensus 29 ~i~~iiGpNG~GKSTLLk~l~~~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~ 108 (258) T COG1120 29 EITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLF 108 (258) T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCHHHCCHHHHHHHEEEECCCCCCCCCCEEEEHHHHCCCCCCCCC T ss_conf 79999899888999999998656788887799999724546988875618993567889999587361742677465533 Q ss_pred H--------HHHHHHHH-----HHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEE-EECCCHHHHHHHHHHHHHH-HC Q ss_conf 9--------99999999-----71311224665578078999999613879998423-2047135888999999998-54 Q gi|254781047|r 105 K--------DVHSRIIM-----YRKKIEFGEILESDPIPLVASSIALESRVLCFDEF-MITNIADAIILSRLFAALF-SH 169 (404) Q Consensus 105 ~--------~ih~~l~~-----~~~~~~~~~~~~~dpl~~va~~l~~~~~lLCfDEF-~V~DiaDAmil~rl~~~lf-~~ 169 (404) T Consensus 109 ~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iAraLaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~ 188 (258) T COG1120 109 GRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREK 188 (258) T ss_pred CCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHC T ss_conf 57887689999999998294777668551168668899999999845899788279720038777999999999999855 Q ss_pred CCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCE-EEECCCCCHHHHCCCCCCCEEEECCCHHHHHHHHHHHH Q ss_conf 9689981786867752387405668989999985050-89804731122112367830220353022689999999 Q gi|254781047|r 170 GCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLE-IISLDSGQDYRRKEQSILPIYMTPLNSYNRVLMDKLWA 244 (404) Q Consensus 170 gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~-V~~l~~~~DYR~~~~~~~~~y~~p~~~~~~~~l~~~f~ 244 (404) T Consensus 189 g~tvv~vlHD------------------ln~A~ryad~~i~l~~G~i~a~----G~-----p~evlT~e~l~~Vyg 237 (258) T COG1120 189 GLTVVMVLHD------------------LNLAARYADHLILLKDGKIVAQ----GT-----PEEVLTEENLREVYG 237 (258) T ss_pred CCEEEEEECC------------------HHHHHHHCCEEEEEECCEEEEE----CC-----CCHHCCHHHHHHHHC T ss_conf 9789999559------------------8899974788999979937860----59-----412159999999709 |
|
| >PRK06921 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0044 Score=39.65 Aligned_cols=74 Identities=22% Similarity=0.319 Sum_probs=55.8 Q ss_pred HHHHHHHHHHCCEEEECCC--CCCCCCCHHH-H-HHHHHHHHHHHCCCCCEEEECCCCHHHHCCCCCCCCCHHHHHHHHH Q ss_conf 6899999853788998189--8787246389-9-9899999998228982899807897880134676531348998988 Q gi|254781047|r 289 ANDFVEIANRFDVVIINDI--PLLKEDRKDW-I-KRFIMLIDVFYEHKIGLIISSEENIEDLFPYKLRKGAFEIQRTVSR 364 (404) Q Consensus 289 ~~DYi~Ia~~f~ti~I~~V--P~l~~~~~d~-a-rRFI~LID~lYd~kv~Li~sa~~~~~~L~~~~~~~~~F~f~Rt~SR 364 (404) T Consensus 167 ~~~~l~~~~~~dlLIIDDLfk~~~G~e~~te~~~~~lf~iIN~Ry~~~kptIiSSNl~~~~L~~---i~-----e~i~SR 238 (265) T PRK06921 167 LEAKLNRMKKVEVLFIDDLFKPVNGKPRATEWQIEQTYSVVNYRYLNHKPILISSELTIDELLD---ID-----EALGSR 238 (265) T ss_pred HHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHH---HH-----HHHHHH T ss_conf 9999998632999998221223479878988999999999999997699989986899899987---63-----798888 Q ss_pred HHHHCC Q ss_conf 745242 Q gi|254781047|r 365 LYEMFS 370 (404) Q Consensus 365 L~EMqS 370 (404) T Consensus 239 i~emc~ 244 (265) T PRK06921 239 IVEMCK 244 (265) T ss_pred HHHHCC T ss_conf 999725 |
|
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.013 Score=36.61 Aligned_cols=79 Identities=23% Similarity=0.438 Sum_probs=59.9 Q ss_pred CHHHHHHHHHHCCEEEECCCCCCCCCCHHHH-HHHHHHHHHHHCCCCCEEEECCCCHHHHCCCCCCCCCHHHHHHHHHHH Q ss_conf 4689999985378899818987872463899-989999999822898289980789788013467653134899898874 Q gi|254781047|r 288 SANDFVEIANRFDVVIINDIPLLKEDRKDWI-KRFIMLIDVFYEHKIGLIISSEENIEDLFPYKLRKGAFEIQRTVSRLY 366 (404) Q Consensus 288 g~~DYi~Ia~~f~ti~I~~VP~l~~~~~d~a-rRFI~LID~lYd~kv~Li~sa~~~~~~L~~~~~~~~~F~f~Rt~SRL~ 366 (404) T Consensus 162 ~~~e~l~~l~~~dLLIiDDlG~e~--~t~w~~e~lf~IIn~Ry~~~kptIiTTNl~~~eL~~~------~-~~Ri~sRl~ 232 (262) T PRK08116 162 DENEIIRALDNADLLILDDLGAEK--DTEWVREKLYNIIDSRYRKGLPTIFTTNLSLEELKNQ------Y-GKRTYSRIL 232 (262) T ss_pred HHHHHHHHHHCCCEEEEEHHCCCC--CCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHH------H-HHHHHHHHH T ss_conf 199999986129989983221456--9878999999999999976999899879999999998------6-379999998 Q ss_pred HHCCHHHHH Q ss_conf 524278897 Q gi|254781047|r 367 EMFSAQYIG 375 (404) Q Consensus 367 EMqS~~yl~ 375 (404) T Consensus 233 e~~~~v~~~ 241 (262) T PRK08116 233 EMCTPVKNE 241 (262) T ss_pred HCCEEEEEE T ss_conf 677899851 |
|
| >pfam03969 AFG1_ATPase AFG1-like ATPase | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.012 Score=36.78 Aligned_cols=76 Identities=12% Similarity=0.145 Sum_probs=51.8 Q ss_pred HHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHCCCCCCCCCHHHHHHHHHHHH------ Q ss_conf 99853788998189878724638999899999998228982899807897880134676531348998988745------ Q gi|254781047|r 294 EIANRFDVVIINDIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIISSEENIEDLFPYKLRKGAFEIQRTVSRLYE------ 367 (404) Q Consensus 294 ~Ia~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~kv~Li~sa~~~~~~L~~~~~~~~~F~f~Rt~SRL~E------ 367 (404) T Consensus 122 ~l~~~~~lLCfDEFqV~D---IaDAMIL~rLf~~Lf~~gvvlV~TSN~~P~~LY~--~GLqR~~FlPfI~ll~~~~~v~~ 196 (361) T pfam03969 122 RFANEARLLCFDEFEVDD---IGDAMILGRLFEALFARGVSLVATSNTAPEQLYR--NGLNRQRFLPAIDLLESHFEVVR 196 (361) T ss_pred HHHHCCCEEEEEEEEECC---HHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHC--CCCCHHHHHHHHHHHHHHCEEEE T ss_conf 997258779976356167---8889999999999997797899808999899836--87417788999999998678998 Q ss_pred HCC-HHHH Q ss_conf 242-7889 Q gi|254781047|r 368 MFS-AQYI 374 (404) Q Consensus 368 MqS-~~yl 374 (404) T Consensus 197 l~~~~DYR 204 (361) T pfam03969 197 VDGPVDYR 204 (361) T ss_pred ECCCCCCC T ss_conf 15987805 |
This family of proteins contains a P-loop motif and are predicted to be ATPases. |
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.076 Score=31.78 Aligned_cols=70 Identities=16% Similarity=0.367 Sum_probs=53.6 Q ss_pred HHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHCCCCCCCCCHHHHHHHHHHHHHCC Q ss_conf 9999853788998189878724638999899999998228982899807897880134676531348998988745242 Q gi|254781047|r 292 FVEIANRFDVVIINDIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIISSEENIEDLFPYKLRKGAFEIQRTVSRLYEMFS 370 (404) Q Consensus 292 Yi~Ia~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~kv~Li~sa~~~~~~L~~~~~~~~~F~f~Rt~SRL~EMqS 370 (404) T Consensus 91 ~~~~l~~~d~l~IDDi~~i~g~~-~~e~~lF~l~N~~~~~~~~llits~~~P~~l~--------~~l~DL~SRl~~~~~ 160 (234) T PRK05642 91 LLDNLEQYELVCIDDLDVIAGKA-DWEEALFHLFNRLRDSGRRLLLAASKSPRELP--------VKLPDLKSRLTLALV 160 (234) T ss_pred HHHHHHHCCEEEEECHHHHCCCH-HHHHHHHHHHHHHHHCCCEEEEECCCCHHHHC--------CCHHHHHHHHHCCCE T ss_conf 98624227989893645546885-99999999999999839959995787955523--------001679999957812 |
|
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.08 Score=31.64 Aligned_cols=81 Identities=20% Similarity=0.303 Sum_probs=61.3 Q ss_pred HCCHHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHCCCCCCCCCHHHHHHHHHH Q ss_conf 02468999998537889981898787246389998999999982289828998078978801346765313489989887 Q gi|254781047|r 286 PLSANDFVEIANRFDVVIINDIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIISSEENIEDLFPYKLRKGAFEIQRTVSRL 365 (404) Q Consensus 286 ~lg~~DYi~Ia~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~kv~Li~sa~~~~~~L~~~~~~~~~F~f~Rt~SRL 365 (404) T Consensus 196 ~~~~~~Fr~~yr~~DvLliDDiqfl~g-k~~tqeeff~~fn~l~~~~kqiv~tsd~~P~~l---~~l~-----~rL~SRf 266 (447) T PRK00149 196 NNAMEEFKEKYRSVDVLLIDDIQFLAG-KEKTQEEFFHTFNALHENNKQIVITSDRPPKEL---EGLE-----DRLRSRF 266 (447) T ss_pred CCCHHHHHHHHHCCCEEEECHHHHHHC-CHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHC---CCCC-----HHHHHHH T ss_conf 186999999997288543214888605-577999999999999984996899578896765---6511-----7788676 Q ss_pred H-----HHCCHHHHH Q ss_conf 4-----524278897 Q gi|254781047|r 366 Y-----EMFSAQYIG 375 (404) Q Consensus 366 ~-----EMqS~~yl~ 375 (404) T Consensus 267 ~~Gl~~~i~~Pd~e~ 281 (447) T PRK00149 267 EWGLTVDIEPPDLET 281 (447) T ss_pred HCCEEEECCCCCHHH T ss_conf 376265105999999 |
|
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.26 Score=28.37 Aligned_cols=89 Identities=21% Similarity=0.214 Sum_probs=62.8 Q ss_pred CCCCCHHHHHHH--------HCCHHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCHHH Q ss_conf 111019998521--------024689999985378899818987872463899989999999822898289980789788 Q gi|254781047|r 274 VSRFSFFDLCDR--------PLSANDFVEIANRFDVVIINDIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIISSEENIED 345 (404) Q Consensus 274 va~f~F~eLC~~--------~lg~~DYi~Ia~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~kv~Li~sa~~~~~~ 345 (404) T Consensus 214 Viy~ta~~L~~~l~~~~~~~~~~~~~~~~~l~~~DLLIIDDLG~E~~-t~~~~~~Lf~iIN~R~~~~k~tIITTNl~~~e 292 (330) T PRK06835 214 VIYRTSDELIENLREIRFNNDNDAPELEDLLINCDLLIIDDLGTESI-TEFSKTELFNLINKRLLMNKKMIISTNLSLEE 292 (330) T ss_pred EEEEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCEEEEECCCCCCC-CHHHHHHHHHHHHHHHHCCCCEEEECCCCHHH T ss_conf 99962999999999975457644899999996189899721034558-86899999999999986799979988999899 Q ss_pred HCCCCCCCCCHHHHHHHHHHHHHCC Q ss_conf 0134676531348998988745242 Q gi|254781047|r 346 LFPYKLRKGAFEIQRTVSRLYEMFS 370 (404) Q Consensus 346 L~~~~~~~~~F~f~Rt~SRL~EMqS 370 (404) T Consensus 293 L~~------~-y~eRi~SRi~~~~~ 310 (330) T PRK06835 293 LLK------T-YSERIASRLLGNFT 310 (330) T ss_pred HHH------H-HHHHHHHHHHHCCE T ss_conf 999------8-74899999981854 |
|
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.28 Score=28.18 Aligned_cols=75 Identities=13% Similarity=0.128 Sum_probs=58.1 Q ss_pred HCCHHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHCCCCCCCCCHHHHHHHHHH Q ss_conf 02468999998537889981898787246389998999999982289828998078978801346765313489989887 Q gi|254781047|r 286 PLSANDFVEIANRFDVVIINDIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIISSEENIEDLFPYKLRKGAFEIQRTVSRL 365 (404) Q Consensus 286 ~lg~~DYi~Ia~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~kv~Li~sa~~~~~~L~~~~~~~~~F~f~Rt~SRL 365 (404) T Consensus 147 ~~~e~~~l~~l~~~dLLIiDdlG~e~-~t~~~~~~lf~iId~Ry~~~kp~IitTNl~~~eL~~~-------lGeR~~dRl 218 (242) T PRK07952 147 ETSEEQLLNDLSNVDLLVIDEIGVQT-ESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKL-------LGERVMDRM 218 (242) T ss_pred CCCHHHHHHHHHCCCEEEEECCCCCC-CCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHH-------HHHHHHHHH T ss_conf 75699999986318989873014665-8888999999999999971698899817999999999-------708999999 Q ss_pred HHH Q ss_conf 452 Q gi|254781047|r 366 YEM 368 (404) Q Consensus 366 ~EM 368 (404) T Consensus 219 ~~~ 221 (242) T PRK07952 219 RLG 221 (242) T ss_pred HHC T ss_conf 727 |
|
| >PRK12422 chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.12 Score=30.56 Aligned_cols=80 Identities=20% Similarity=0.241 Sum_probs=61.4 Q ss_pred CCHHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHCCCCCCCCCHHHHHHHHHHH Q ss_conf 24689999985378899818987872463899989999999822898289980789788013467653134899898874 Q gi|254781047|r 287 LSANDFVEIANRFDVVIINDIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIISSEENIEDLFPYKLRKGAFEIQRTVSRLY 366 (404) Q Consensus 287 lg~~DYi~Ia~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~kv~Li~sa~~~~~~L~~~~~~~~~F~f~Rt~SRL~ 366 (404) T Consensus 191 ~~~~~Fr~~yr~~DvLLIDDIQfl~g-K~~tqeEff~tfN~L~~~~KQIVitsDr~P~el---~~l~-----~RL~SRf~ 261 (455) T PRK12422 191 GEMQRFRSFYRNVDALFIEDIEVFSG-KGATQEEFFHTFNSLHTEGKLIVISSSYAPGDL---KAME-----ERLISRFE 261 (455) T ss_pred CCHHHHHHHHHCCCEEEEEHHHHHHC-CHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHH---HHHH-----HHHHHHHH T ss_conf 88999999996388776314788728-488999999999999985996999689895765---1268-----99998863 Q ss_pred -----HHCCHHHHH Q ss_conf -----524278897 Q gi|254781047|r 367 -----EMFSAQYIG 375 (404) Q Consensus 367 -----EMqS~~yl~ 375 (404) T Consensus 262 ~GL~v~I~~Pd~et 275 (455) T PRK12422 262 WGIAIPIHPLTREG 275 (455) T ss_pred CCEEECCCCCCHHH T ss_conf 76132168999899 |
|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.19 Score=29.19 Aligned_cols=69 Identities=20% Similarity=0.268 Sum_probs=52.2 Q ss_pred HHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCC-CCEEEECCCCHHHHCCCCCCCCCHHHHHHHHHHHH Q ss_conf 8999998537889981898787246389998999999982289-82899807897880134676531348998988745 Q gi|254781047|r 290 NDFVEIANRFDVVIINDIPLLKEDRKDWIKRFIMLIDVFYEHK-IGLIISSEENIEDLFPYKLRKGAFEIQRTVSRLYE 367 (404) Q Consensus 290 ~DYi~Ia~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~k-v~Li~sa~~~~~~L~~~~~~~~~F~f~Rt~SRL~E 367 (404) T Consensus 89 ~~~l~~l~~~dll~iDDi~~i~g~-~~~ee~lF~l~N~~~~~g~~~ll~ts~~~P~~l~----~----~l~DL~SRl~~ 158 (235) T PRK08084 89 PEVLEGMEQLSLVCIDNIECIAGD-ELWEMAIFDLYNRILESGKTRLLITGDRPPRQLN----L----GLPDLASRLDW 158 (235) T ss_pred HHHHHHHHHCCEEEEECHHHHCCC-HHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHCC----C----CCHHHHHHHHC T ss_conf 999987641898998274554699-7899999999999998489669996798824302----3----12889999956 |
|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.32 Score=27.77 Aligned_cols=69 Identities=17% Similarity=0.252 Sum_probs=51.4 Q ss_pred HHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 999998537889981898787246389998999999982289828998078978801346765313489989887452 Q gi|254781047|r 291 DFVEIANRFDVVIINDIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIISSEENIEDLFPYKLRKGAFEIQRTVSRLYEM 368 (404) Q Consensus 291 DYi~Ia~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~kv~Li~sa~~~~~~L~~~~~~~~~F~f~Rt~SRL~EM 368 (404) T Consensus 83 ~~l~~l~~~d~l~iDDi~~i~~~~-~~e~~lF~l~N~~~~~~~~ilits~~~p~~l~--------~~l~dL~SRl~~~ 151 (226) T TIGR03420 83 EVLEGLEQADLVCLDDVEAIAGQP-EWQEALFHLYNRVREAGGRLLIAGRAAPAQLP--------LRLPDLRTRLAWG 151 (226) T ss_pred HHHHHCCCCCEEEEECHHHHCCCH-HHHHHHHHHHHHHHHHCCEEEEECCCCHHHCC--------CCHHHHHHHHHCC T ss_conf 999727448999996633343783-78999999999998652828986788823203--------2017799999688 |
Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. |
| >pfam00308 Bac_DnaA Bacterial dnaA protein | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.19 Score=29.29 Aligned_cols=70 Identities=19% Similarity=0.277 Sum_probs=52.4 Q ss_pred HHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHCCCCCCCCCHHHHHHHHHHHH Q ss_conf 6899999853788998189878724638999899999998228982899807897880134676531348998988745 Q gi|254781047|r 289 ANDFVEIANRFDVVIINDIPLLKEDRKDWIKRFIMLIDVFYEHKIGLIISSEENIEDLFPYKLRKGAFEIQRTVSRLYE 367 (404) Q Consensus 289 ~~DYi~Ia~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~kv~Li~sa~~~~~~L~~~~~~~~~F~f~Rt~SRL~E 367 (404) T Consensus 88 ~~~f~~~l~~~d~l~iDDi~~l~~-~~~~ee~lf~l~N~~~~~~~~lllts~~~p~~l~----~----~~~dL~SRL~~ 157 (219) T pfam00308 88 IEAFKKSYRNVDLLLIDDIQFLAG-KEKTQEEFFHTFNALHENNKQIVLTSDRPPKELE----G----FEDRLRSRFEW 157 (219) T ss_pred HHHHHHHHHHCCHHHHCCHHHHCC-CHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCC----C----CCHHHHHHHHC T ss_conf 889999976323365223676568-6478999999999999729869997799810024----5----32779999868 |
|
| >PRK08903 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=91.36 E-value=0.78 Score=25.35 Aligned_cols=62 Identities=15% Similarity=0.194 Sum_probs=44.8 Q ss_pred HHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCC-CCEEEECCCCHHHHCCCCCCCCCHHHHHHHHHHHH Q ss_conf 998537889981898787246389998999999982289-82899807897880134676531348998988745 Q gi|254781047|r 294 EIANRFDVVIINDIPLLKEDRKDWIKRFIMLIDVFYEHK-IGLIISSEENIEDLFPYKLRKGAFEIQRTVSRLYE 367 (404) Q Consensus 294 ~Ia~~f~ti~I~~VP~l~~~~~d~arRFI~LID~lYd~k-v~Li~sa~~~~~~L~~~~~~~~~F~f~Rt~SRL~E 367 (404) T Consensus 86 ~~~~~~d~l~iDDi~~i~~~~---q~~lF~l~N~~~~~~~~~ll~s~~~~p~~l~--------~~-~DL~SRl~~ 148 (227) T PRK08903 86 DFDPRAELYAVDDVERLDDAQ---QIALFNLFNRVRAHGKTALLVAGPAAPLALD--------VR-EDLRTRLGW 148 (227) T ss_pred HHHHCCCEEEEECCCCCCCHH---HHHHHHHHHHHHHCCCCEEEECCCCCHHHCC--------CC-HHHHHHHHC T ss_conf 420018989996411489569---9999999999997299489971899712012--------00-899999938 |
|
| >TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD; InterPro: IPR014128 The TraD protein performs an essential coupling function in conjugative type IV secretion systems | Back alignment and domain information |
|---|
Probab=90.49 E-value=0.26 Score=28.42 Aligned_cols=92 Identities=17% Similarity=0.238 Sum_probs=55.7 Q ss_pred CCHHHHHHHHHHCC---EEEECCCCCCCC-----CCHHHHHHHHHHHHHHHCCCCCE-EEECCCCHHHHCCCCCCCCCHH Q ss_conf 24689999985378---899818987872-----46389998999999982289828-9980789788013467653134 Q gi|254781047|r 287 LSANDFVEIANRFD---VVIINDIPLLKE-----DRKDWIKRFIMLIDVFYEHKIGL-IISSEENIEDLFPYKLRKGAFE 357 (404) Q Consensus 287 lg~~DYi~Ia~~f~---ti~I~~VP~l~~-----~~~d~arRFI~LID~lYd~kv~L-i~sa~~~~~~L~~~~~~~~~F~ 357 (404) T Consensus 439 ~A~~~lL~L~pn~~RRiW~i~DELPsLHkLp~L~~~~AE~RKFG---------GC~vlG~QS~aQL~~IY-G~~~-GA~~ 507 (613) T TIGR02759 439 IASRSLLSLAPNDDRRIWFIMDELPSLHKLPDLAETIAEVRKFG---------GCYVLGIQSFAQLEKIY-GQNA-GAAT 507 (613) T ss_pred HHHHHHHCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHH---------HHHHHHHCCHHHHHHHC-CCCH-HHHH T ss_conf 99988734688999727888732335445510453520000324---------68988712367765423-7714-5899 Q ss_pred -HH----HHHHHHHHHCCHHHHHHCCCCCCHHHHHHCCCC Q ss_conf -89----989887452427889724442693355425863 Q gi|254781047|r 358 -IQ----RTVSRLYEMFSAQYIGKNKIIIDACKILLSNKS 392 (404) Q Consensus 358 -f~----Rt~SRL~EMqS~~yl~~~~~~~~~~~~~~~~~~ 392 (404) T Consensus 508 l~dllnTr~fFR~P~~~~A~~~s~~---lGe~EI~~~~E~ 544 (613) T TIGR02759 508 LFDLLNTRFFFRSPSAKMAKIVSED---LGEQEIEESKEN 544 (613) T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHH---HCHHHHHHHHCC T ss_conf 9977765676507888799999984---167889986137 |
This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM) , .; GO: 0000746 conjugation. |
| >KOG0652 consensus | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0023 Score=41.44 Aligned_cols=162 Identities=19% Similarity=0.287 Sum_probs=80.4 Q ss_pred CHHHHHHHHHHHHCCCCCCCH-HHHHHHHHHHHHHHHHHHCCC---CCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCC Q ss_conf 005899999999748877898-999999999999999861354---3332256643102466666688649988888772 Q gi|254781047|r 3 LDLVSSRLISLIQDKKLKYNP-AQESVVKSFDRLLVDLYKQQK---QEQGIFSWLWNLRGIKRKYCSMQGIYLHGDVGQG 78 (404) Q Consensus 3 ~~~~~~~y~~~v~~~~i~~D~-~Q~~~i~~L~~L~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~kGlYL~G~VG~G 78 (404) T Consensus 146 letLP~eyDsrVkaMevDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~----l----gi~pPKGvLmYGPPGTG 217 (424) T KOG0652 146 LETLPSEYDSRVKAMEVDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFEN----L----GIRPPKGVLMYGPPGTG 217 (424) T ss_pred HHCCCHHHHHHCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHH----C----CCCCCCCEEEECCCCCC T ss_conf 210876663010144504687432000325789999999886145656878874----6----88899722765799975 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-HHCCCCCCCCCCCCHHHHH--HHHHHCCC--CEEEEEEEEE--- Q ss_conf 89999999985781114688899999999999999-7131122466557807899--99996138--7999842320--- Q gi|254781047|r 79 KSMLMNLFFALVPIEKKCRLHFYEFMKDVHSRIIM-YRKKIEFGEILESDPIPLV--ASSIALES--RVLCFDEFMI--- 150 (404) Q Consensus 79 KT~LMdlFy~~l~~~~K~R~HFh~FM~~ih~~l~~-~~~~~~~~~~~~~dpl~~v--a~~l~~~~--~lLCfDEF~V--- 150 (404) T Consensus 218 KTlmARAcAaqT~------a---TFLKLAgPQLVQMfIG----------dGAkLVRDAFaLAKEkaP~IIFIDElDAIGt 278 (424) T KOG0652 218 KTLMARACAAQTN------A---TFLKLAGPQLVQMFIG----------DGAKLVRDAFALAKEKAPTIIFIDELDAIGT 278 (424) T ss_pred HHHHHHHHHHHCC------C---HHHHHCCHHHHHHHHC----------CHHHHHHHHHHHHHCCCCEEEEEECHHHHCC T ss_conf 7799999987401------0---6887326477766533----------4188999999875334983899730023233 Q ss_pred -----CCCHHHHHHHHHHHHHH-------HCCCEEEEECCCC----HHHHHCCCCCH Q ss_conf -----47135888999999998-------5496899817868----67752387405 Q gi|254781047|r 151 -----TNIADAIILSRLFAALF-------SHGCIIVMTSNFI----PENLYKDEINR 191 (404) Q Consensus 151 -----~DiaDAmil~rl~~~lf-------~~gv~lV~TSN~~----P~dLY~~GLqR 191 (404) T Consensus 279 KRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDR 335 (424) T KOG0652 279 KRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDR 335 (424) T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHHHHHCCCCCC T ss_conf 436531234389999999999860489975626788521643434888864466444 |
|
| >PRK06674 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.056 Score=32.59 Aligned_cols=163 Identities=19% Similarity=0.231 Sum_probs=87.4 Q ss_pred CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEE-CCCCCCH Q ss_conf 970058999999997488778989999999999999998613543332256643102466666688649988-8887728 Q gi|254781047|r 1 MSLDLVSSRLISLIQDKKLKYNPAQESVVKSFDRLLVDLYKQQKQEQGIFSWLWNLRGIKRKYCSMQGIYLH-GDVGQGK 79 (404) Q Consensus 1 m~~~~~~~~y~~~v~~~~i~~D~~Q~~~i~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kGlYL~-G~VG~GK 79 (404) T Consensus 1 M~y~aLyrkyRP----~~F~dvvGQ~~v~~~L~nai~---~~---------------r-------i~HAyLF~GprGtGK 51 (563) T PRK06674 1 MSYQALYRVFRP----QKFEDVVGQEHVTKTLQNALL---QE---------------K-------VSHAYLFSGPRGTGK 51 (563) T ss_pred CCCHHHHHHHCC----CCHHHHCCHHHHHHHHHHHHH---CC---------------C-------CCCEEEEECCCCCCH T ss_conf 952878876389----976552480999999999998---49---------------9-------650343128998689 Q ss_pred HHHHHHHHHHCCCCHHH-------HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH-----HCCCCEEEEEE Q ss_conf 99999999857811146-------8889999999999999971311224665578078999999-----61387999842 Q gi|254781047|r 80 SMLMNLFFALVPIEKKC-------RLHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSI-----ALESRVLCFDE 147 (404) Q Consensus 80 T~LMdlFy~~l~~~~K~-------R~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l-----~~~~~lLCfDE 147 (404) T Consensus 52 ts~Ari~AkaLnC~~~~~~~pC~~C~~C~~i~~g~~~DviEiDaa--sn--~gVd~IR~i~~~v~~~P~~~~yKV~IIDe 127 (563) T PRK06674 52 TSIAKVFAKAVNCEHAPVAEPCNECPSCLGITNGSISDVLEIDAA--SN--NGVDEIRDIRDKVKFAPSAVEYKVYIIDE 127 (563) T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCC--CC--CCHHHHHHHHHHHCCCCCCCCEEEEEEEC T ss_conf 999999999857999999887766878999855899877985255--55--78799999999826488678737999854 Q ss_pred EEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECC Q ss_conf 3204713588899999999854968998178686775238740566898999998505089804 Q gi|254781047|r 148 FMITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLD 211 (404) Q Consensus 148 F~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~ 211 (404) T Consensus 128 ah~Lt~~A~NALLKtLEEPP~~viFILaTte--p~ki-------------~~TI~SRCQrf~F~ 176 (563) T PRK06674 128 VHMLSIGAFNALLKTLEEPPGHVIFILATTE--PHKI-------------PPTIISRCQRFDFR 176 (563) T ss_pred HHHCCHHHHHHHHHHHHCCCCCEEEEEECCC--HHHC-------------CHHHHHHHEEEECC T ss_conf 5637999999999986388756499996599--4758-------------47887331031278 |
|
| >PRK06647 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.16 Score=29.70 Aligned_cols=164 Identities=13% Similarity=0.094 Sum_probs=92.7 Q ss_pred CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHH Q ss_conf 97005899999999748877898999999999999999861354333225664310246666668864998888877289 Q gi|254781047|r 1 MSLDLVSSRLISLIQDKKLKYNPAQESVVKSFDRLLVDLYKQQKQEQGIFSWLWNLRGIKRKYCSMQGIYLHGDVGQGKS 80 (404) Q Consensus 1 m~~~~~~~~y~~~v~~~~i~~D~~Q~~~i~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kGlYL~G~VG~GKT 80 (404) T Consensus 1 msy~~la~KYRP~----~F~dvvGQe~vv~~L~nai~~---~---------------------rl~HAyLFsGprG~GKT 52 (560) T PRK06647 1 MSYRGTATKRRPR----DFNSLEGQDFVVETLKHSIEK---N---------------------KIANAYIFSGPRGVGKT 52 (560) T ss_pred CCCHHHHHHHCCC----CHHHHCCCHHHHHHHHHHHHC---C---------------------CCCCEEEEECCCCCCHH T ss_conf 9537777642898----654403949999999999974---9---------------------97743663289987899 Q ss_pred HHHHHHHHHCCCCHHHH-------HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH-----HCCCCEEEEEEE Q ss_conf 99999998578111468-------889999999999999971311224665578078999999-----613879998423 Q gi|254781047|r 81 MLMNLFFALVPIEKKCR-------LHFYEFMKDVHSRIIMYRKKIEFGEILESDPIPLVASSI-----ALESRVLCFDEF 148 (404) Q Consensus 81 ~LMdlFy~~l~~~~K~R-------~HFh~FM~~ih~~l~~~~~~~~~~~~~~~dpl~~va~~l-----~~~~~lLCfDEF 148 (404) T Consensus 53 t~ArilAk~LnC~~~~~~~PCg~C~sC~~i~~g~~~DviEidaas---n-~~VddIR~l~e~v~~~P~~~~yKV~IIDEa 128 (560) T PRK06647 53 SSARAFARCLNCVNGPTIMPCGECFSCKSIDNDSSLDVIEIDGAS---N-TSVQDVRQIKEEIMFPPASSRYRVYIIDEV 128 (560) T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCC---C-CCHHHHHHHHHHHCCCCCCCCEEEEEECCH T ss_conf 999999999659999998888788788887459998757643645---4-888999999998632876687069996465 Q ss_pred EECCCHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHCCCCCHHHHHHHHHHHHHCCEEEECC Q ss_conf 204713588899999999854968998178686775238740566898999998505089804 Q gi|254781047|r 149 MITNIADAIILSRLFAALFSHGCIIVMTSNFIPENLYKDEINRNVLVSFIELLEKKLEIISLD 211 (404) Q Consensus 149 ~V~DiaDAmil~rl~~~lf~~gv~lV~TSN~~P~dLY~~GLqR~~FlPfI~~lk~~~~V~~l~ 211 (404) T Consensus 129 hmLt~~A~NALLKtLEEPP~~~~FILaTte--~~KI-------------~~TI~SRCQ~f~Fk 176 (560) T PRK06647 129 HMLSNSAFNALLKTIEEPPPYIVFIFATTE--VHKL-------------PATIKSRCQHFNFR 176 (560) T ss_pred HHCCHHHHHHHHHHHHCCCCCEEEEEECCC--HHHC-------------HHHHHHHHEEEECC T ss_conf 655999999999986348875599997799--4768-------------48999651041055 |
|
| >PRK05563 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=92.14 E-value=0.98 Score=24.71 Aligned_cols=160 Identities=12% Similarity=0.127 Sum_probs=82.3 Q ss_pred CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEE-CCCCCCH Q ss_conf 970058999999997488778989999999999999998613543332256643102466666688649988-8887728 Q gi|254781047|r 1 MSLDLVSSRLISLIQDKKLKYNPAQESVVKSFDRLLVDLYKQQKQEQGIFSWLWNLRGIKRKYCSMQGIYLH-GDVGQGK 79 (404) Q Consensus 1 m~~~~~~~~y~~~v~~~~i~~D~~Q~~~i~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kGlYL~-G~VG~GK 79 (404) T Consensus 1 M~Y~aLyrkyRP----~~f~dvvgQ~~v~~~L~n~i~~---~---------------~------i~h-ayLf~GprG~GK 51 (541) T PRK05563 1 MGYTALYREWRP----RTFEDVVGQEHITTTLKNQIIN---N---------------R------IAH-AYLFCGTRGTGK 51 (541) T ss_pred CCCHHHHHHHCC----CCHHHHCCCHHHHHHHHHHHHC---C---------------C------CCE-EEEEECCCCCCH T ss_conf 963878876489----9776624849999999999984---9---------------9----- |