254781141
hypothetical protein CLIBASIA_05225
| GeneID in NCBI database: | 8210166 | Locus tag: | CLIBASIA_05225 |
| Protein GI in NCBI database: | 254781141 | Protein Accession: | YP_003065554.1 |
| Gene range: | -(1140043, 1140633) | Protein Length: | 196aa |
| Gene description: | hypothetical protein | ||
| COG prediction: | none | ||
| KEGG prediction: | hypothetical protein | ||
| SEED prediction: | hypothetical protein | ||
| Pathway involved in KEGG: | not defined | ||
| Subsystem involved in SEED: | - none - | ||
| sequence | sequence profile | ||
Prediction of Local Sequence Properties
| Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
| Identity | Alignment graph | Length | Definition | Round | E-value |
| Target | 196 | hypothetical protein CLIBASIA_05225 [Candidatus Liberib | |||
| 315122534 | 328 | hypothetical protein CKC_03930 [Candidatus Liberibacter | 1 | 2e-68 | |
| 227822442 | 317 | hypothetical protein NGR_c18970 [Sinorhizobium fredii N | 1 | 4e-19 | |
| 150397034 | 322 | hypothetical protein Smed_1831 [Sinorhizobium medicae W | 1 | 1e-17 | |
| 283856245 | 283 | hypothetical protein ZMO0383 [Zymomonas mobilis subsp. | 2 | 2e-04 | |
| 241760936 | 283 | hypothetical protein ZmobDRAFT_0101 [Zymomonas mobilis | 2 | 2e-04 | |
| 160897388 | 311 | hypothetical protein Daci_1945 [Delftia acidovorans SPH | 2 | 0.002 |
| >gi|315122534|ref|YP_004063023.1| hypothetical protein CKC_03930 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 328 | Back alignment and organism information |
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Score = 262 bits (670), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 130/198 (65%), Positives = 160/198 (80%), Gaps = 2/198 (1%)
Query: 1 MQNQAKILAQSAEALAQLINHHIPDDSSPTLEKTYPETYHRIRYLRQKALNIINHFVETG 60
+Q QAKILA SA++LAQLINHH+P D P+L +T P Y I LRQ+ALNIINHFVE G
Sbjct: 131 VQKQAKILAHSADSLAQLINHHMPADPHPSLAQTDPSAYQNIINLRQQALNIINHFVEEG 190
Query: 61 RNPDNIAKELDSEILEKKLIAENQQLEHLFPQTKDPAQRENFFKNLFRIGNILGFQKEEM 120
R PD IAKELD+E +E KL EN+QLE++FPQTKDPAQRE+FF+N+F+IG +GFQ+EEM
Sbjct: 191 RYPDKIAKELDAEHVEIKLKNENEQLENIFPQTKDPAQRESFFQNIFKIGKKIGFQEEEM 250
Query: 121 VDITDHRLLSLAYYAQIGLQSQKLSEDAYHKIRHKPFVNITTNKAK--NHRRITSQEKAI 178
+I DHRLL LA+YAQ+GLQSQK+SED Y KIRHKP + N+ K NH RITSQ++AI
Sbjct: 251 KNIIDHRLLVLAHYAQLGLQSQKISEDVYRKIRHKPSGSSVPNRKKSCNHHRITSQQRAI 310
Query: 179 QKLYQTGSLYDSLEIDFV 196
QKL ++GS YD+L+IDFV
Sbjct: 311 QKLQKSGSFYDALDIDFV 328
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Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|227822442|ref|YP_002826414.1| hypothetical protein NGR_c18970 [Sinorhizobium fredii NGR234] Length = 317 | Back alignment and organism information |
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| >gi|150397034|ref|YP_001327501.1| hypothetical protein Smed_1831 [Sinorhizobium medicae WSM419] Length = 322 | Back alignment and organism information |
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| >gi|283856245|ref|YP_162118.2| hypothetical protein ZMO0383 [Zymomonas mobilis subsp. mobilis ZM4] Length = 283 | Back alignment and organism information |
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| >gi|241760936|ref|ZP_04759025.1| hypothetical protein ZmobDRAFT_0101 [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 283 | Back alignment and organism information |
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| >gi|160897388|ref|YP_001562970.1| hypothetical protein Daci_1945 [Delftia acidovorans SPH-1] Length = 311 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLAST against CDD database part II
No hit with e-value below 0.005
Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
No hit with probability above 90.00
Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
No homologous structure with e-value below 0.005
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 90.00
Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 90.00
Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
No hit with e-value below 0.005
Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
No hit with probability higher than 90.00