254781143

254781143

hypothetical protein CLIBASIA_05235

GeneID in NCBI database:8210168Locus tag:CLIBASIA_05235
Protein GI in NCBI database:254781143Protein Accession:YP_003065556.1
Gene range:-(1141262, 1141369)Protein Length:35aa
Gene description:hypothetical protein
COG prediction:none
KEGG prediction:hypothetical protein
SEED prediction:not defined as a protein in SEED
Pathway involved in KEGG:not defined
Subsystem involved in KEGG:not defined
sequencesequence profile

Prediction of Local Sequence Properties

SourceSummaryResult
scaler
NCBI Databasesequence
PSIPREDsecondary structure
SSPROsecondary structure
DISEMBLcoil and loop
DISEMBLflexible loop
SEGlow complexity
DISOPREDdisordered
DISEMBLmissing residues
DISPROdisordered
TMHMMnone TM-Helix
TOPPREDnone TM-Helix
HMMTOPnone TM-Helix
MEMSATnone TM-Helix
MEMSAT_SVMnone TM-Helix
PHOBIUSnone TM-Helix
SignalP_HMMno
SignalP_NNno
COILScoiled coil
  
--------10--------20--------30-----
MELKRAKIQAEINIKKQQADAEYLLKKKLQSQQTL
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
MELKRAKIQAEINIKKQQADAEYLLKKKLQSQQTL
melkrakiqaeinikkqqadAEYLLKKKLQSQQTL
MELKRAKIQAEINIKKQQADAEYllkkklqsqqTL
******************A**EYLLK**LQ*****
MELKRAKIQAEINIKKQQADAEYLLKK********
MELKRAKIQAEINIKKQQADAEYLLKKKLQS****
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiihhhhhhhhhhhhhhhhhhhhooooooooooo
iiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MELKRAKIQAEINIKKQQADAEYLLKKKLQSQQTL

Close Homologs Detected by BLAST or PSI-BLAST

Homolog within the Genome Detected by BLAST

No hits with e-value below 0.05

Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations

IdentityAlignment graphLength Definition Round E-value
Target35 hypothetical protein CLIBASIA_05235 [Candidatus Liberib
315122535637 hypothetical protein CKC_03935 [Candidatus Liberibacter 1 0.004
>gi|315122535|ref|YP_004063024.1| hypothetical protein CKC_03935 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 637 Back     alignment and organism information
 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/28 (78%), Positives = 26/28 (92%)

Query: 1   MELKRAKIQAEINIKKQQADAEYLLKKK 28
           MELKRAKIQAEI++K QQ +AEYLLK+K
Sbjct: 605 MELKRAKIQAEISLKSQQIEAEYLLKEK 632


Species: Candidatus Liberibacter solanacearum
Genus: Candidatus Liberibacter
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch

Conserved Domains in CDD Database Detected by RPS-BLAST

No hit with e-value below 0.005

Conserved Domains in CDD Database Detected by HHsearch

No hit with probability above 90.00


Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch

Homologous Structures Detected by PSI-BLAST against Nonredundant Database

No homologous structure with e-value below 0.005

Homologous Structures in PDB70 Database Detected by RPS-BLAST

No hit with e-value below 0.005

Homologous Structures in PDB70 Database Detected by HHsearch

No hit with probability above 90.00


Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch

Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST

No hit with e-value below 0.005

Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch

No hit with probability above 90.00

Homologous Domains in MMDB70 Database Detected by RPS-BLAST

No hit with e-value below 0.005

Homologous Domains in MMDB70 Database Detected by HHsearch

No hit with probability higher than 90.00