254781149
replicative DNA helicase
GeneID in NCBI database: | 8210174 | Locus tag: | CLIBASIA_05280 |
Protein GI in NCBI database: | 254781149 | Protein Accession: | YP_003065562.1 |
Gene range: | +(1147185, 1147985) | Protein Length: | 266aa |
Gene description: | replicative DNA helicase | ||
COG prediction: | [L] Replicative DNA helicase | ||
KEGG prediction: | replicative DNA helicase | ||
SEED prediction: | DnaB helicase | ||
Pathway involved in KEGG: | not defined | ||
Subsystem involved in SEED: | - none - | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
Identity | Alignment graph | Length | Definition | E-value | |
Target | 266 | replicative DNA helicase [Candidatus Liberibacter asiat | |||
254780332 | 504 | replicative DNA helicase [Candidatus Liberibacter | 6e-16 | ||
254780334 | 479 | DNA repair protein RadA [Candidatus Liberibacter a | 9e-04 |
>gi|254780332|ref|YP_003064745.1| replicative DNA helicase [Candidatus Liberibacter asiaticus str. psy62] Length = 504 | Back alignment |
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Score = 75.9 bits (185), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 79/163 (48%), Gaps = 21/163 (12%) Query: 88 HLTKNQCTGSSCISIANAATTAMKSAEQQ-KKEGENPDIKWGLQSVDHLMGGVQLRELIL 146 HL +N + ++A T A+ A Q ++G + G+Q++D MGG+Q +LI+ Sbjct: 164 HLAENGRYDGGFHTFSDAMTVAIDMAGQAFNRDGRLAGVSTGIQTLDKQMGGLQRSDLII 223 Query: 147 IGARPSMGKTTFALSTALHMA---------------MSGHGVAFFSLEMDREKLGARALS 191 I RP MGKT+ A + A ++A ++G V F+SLEM E+L R +S Sbjct: 224 IAGRPGMGKTSLATNIAYNVADAYKAELQTDGSYKTINGGIVGFYSLEMSSEQLATRIIS 283 Query: 192 NLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIID 234 + +P + RGE+ + Y + +Q PL ID Sbjct: 284 E-----QTEVPSSKIRRGELTRPDYEKIVACSQVMQKLPLYID 321 |
>gi|254780334|ref|YP_003064747.1| DNA repair protein RadA [Candidatus Liberibacter asiaticus str. psy62] Length = 479 | Back alignment |
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Score = 35.4 bits (80), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 129 LQSVDHLMGGVQLR-ELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLE 179 + +D + GG +R +IL+G P +GK+T + TA +A H + + S E Sbjct: 76 IDELDRVTGGGFVRGSVILVGGDPGIGKSTLLMQTAASLAYKKHRITYVSGE 127 |
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 266 | replicative DNA helicase [Candidatus Liberibacter asiat | |||
315122540 | 475 | replicative DNA helicase [Candidatus Liberibacter solan | 1 | 1e-109 | |
292669342 | 440 | DNA replication protein DnaC [Selenomonas noxia ATCC 43 | 1 | 2e-15 | |
304437861 | 439 | replicative DNA helicase DnaB [Selenomonas sp. oral tax | 1 | 2e-15 | |
238926663 | 448 | DNA replication protein DnaC [Selenomonas flueggei ATCC | 1 | 3e-15 | |
260888718 | 441 | replicative DNA helicase [Selenomonas sputigena ATCC 35 | 1 | 7e-15 | |
268315593 | 945 | replicative DNA helicase [Rhodothermus marinus DSM 4252 | 1 | 8e-15 | |
313897021 | 440 | replicative DNA helicase [Selenomonas sp. oral taxon 13 | 1 | 8e-15 | |
320531030 | 440 | replicative DNA helicase [Selenomonas artemidis F0399] | 1 | 9e-15 | |
298372503 | 521 | replicative DNA helicase [Bacteroidetes oral taxon 274 | 1 | 2e-14 | |
317123151 | 443 | primary replicative DNA helicase [Thermaerobacter maria | 1 | 3e-14 |
>gi|315122540|ref|YP_004063029.1| replicative DNA helicase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 475 | Back alignment and organism information |
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Score = 397 bits (1021), Expect = e-109, Method: Compositional matrix adjust. Identities = 189/243 (77%), Positives = 217/243 (89%) Query: 1 MNAEIISHFESQTKISFSTYLNNLLTLASSISSEVINAARRVVQQWARITISQEAKALAL 60 MN+EIISHFE QTKI+FSTYL NLLTLA++ISSEVINAARRVVQQWARITISQEAK L+L Sbjct: 69 MNSEIISHFEKQTKITFSTYLGNLLTLATTISSEVINAARRVVQQWARITISQEAKTLSL 128 Query: 61 HTSDPTCNTATLIRKSMQSFEDIISEVHLTKNQCTGSSCISIANAATTAMKSAEQQKKEG 120 +TS P+CNT +LI+K MQ+FEDI SE+ L N+CT +SCISIA+AA TAM SAEQQK++ Sbjct: 129 YTSHPSCNTTSLIQKFMQNFEDINSEIRLANNKCTSTSCISIAHAAKTAMISAEQQKEKD 188 Query: 121 ENPDIKWGLQSVDHLMGGVQLRELILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEM 180 N D+KWGL+S+DHL+GGVQLRELILIGARPSMGKTTFALS AL M MSGHGVAFFSLEM Sbjct: 189 GNTDLKWGLKSIDHLIGGVQLRELILIGARPSMGKTTFALSVALQMTMSGHGVAFFSLEM 248 Query: 181 DREKLGARALSNLLYPSSSRIPYLNLIRGEINQEQYRISQGICEKLQDFPLIIDDRPSPG 240 DREK+GARALSNLLY S +RIPY+NLIRGEINQEQ+R S+ ICE+LQ+FPLIIDDR P Sbjct: 249 DREKIGARALSNLLYESPARIPYINLIRGEINQEQHRSSKEICEQLQNFPLIIDDRTFPT 308 Query: 241 IME 243 I+E Sbjct: 309 IVE 311 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|292669342|ref|ZP_06602768.1| DNA replication protein DnaC [Selenomonas noxia ATCC 43541] Length = 440 | Back alignment and organism information |
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>gi|304437861|ref|ZP_07397809.1| replicative DNA helicase DnaB [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 439 | Back alignment and organism information |
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>gi|238926663|ref|ZP_04658423.1| DNA replication protein DnaC [Selenomonas flueggei ATCC 43531] Length = 448 | Back alignment and organism information |
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>gi|260888718|ref|ZP_05899981.1| replicative DNA helicase [Selenomonas sputigena ATCC 35185] Length = 441 | Back alignment and organism information |
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>gi|268315593|ref|YP_003289312.1| replicative DNA helicase [Rhodothermus marinus DSM 4252] Length = 945 | Back alignment and organism information |
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>gi|313897021|ref|ZP_07830568.1| replicative DNA helicase [Selenomonas sp. oral taxon 137 str. F0430] Length = 440 | Back alignment and organism information |
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>gi|320531030|ref|ZP_08032060.1| replicative DNA helicase [Selenomonas artemidis F0399] Length = 440 | Back alignment and organism information |
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>gi|298372503|ref|ZP_06982493.1| replicative DNA helicase [Bacteroidetes oral taxon 274 str. F0058] Length = 521 | Back alignment and organism information |
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>gi|317123151|ref|YP_004103154.1| primary replicative DNA helicase [Thermaerobacter marianensis DSM 12885] Length = 443 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 266 | replicative DNA helicase [Candidatus Liberibacter asiat | ||
TIGR00665 | 434 | TIGR00665, DnaB, replicative DNA helicase | 9e-28 | |
PRK09165 | 497 | PRK09165, PRK09165, replicative DNA helicase; Provision | 3e-20 | |
COG0305 | 435 | COG0305, DnaB, Replicative DNA helicase [DNA replicatio | 8e-22 | |
cd00984 | 242 | cd00984, DnaB_C, DnaB helicase C terminal domain | 2e-21 | |
pfam03796 | 186 | pfam03796, DnaB_C, DnaB-like helicase C terminal domain | 5e-21 | |
PRK07773 | 886 | PRK07773, PRK07773, replicative DNA helicase; Validated | 3e-18 | |
PRK06749 | 428 | PRK06749, PRK06749, replicative DNA helicase; Provision | 5e-15 | |
PRK08760 | 476 | PRK08760, PRK08760, replicative DNA helicase; Provision | 3e-14 | |
PRK05595 | 444 | PRK05595, PRK05595, replicative DNA helicase; Provision | 3e-13 | |
PRK05748 | 448 | PRK05748, PRK05748, replicative DNA helicase; Provision | 3e-12 | |
PRK07004 | 460 | PRK07004, PRK07004, replicative DNA helicase; Provision | 2e-10 | |
PRK08006 | 471 | PRK08006, PRK08006, replicative DNA helicase; Provision | 4e-10 | |
PRK08840 | 464 | PRK08840, PRK08840, replicative DNA helicase; Provision | 3e-09 | |
PRK06904 | 472 | PRK06904, PRK06904, replicative DNA helicase; Validated | 8e-09 | |
PRK05636 | 505 | PRK05636, PRK05636, replicative DNA helicase; Provision | 2e-08 | |
PRK06321 | 472 | PRK06321, PRK06321, replicative DNA helicase; Provision | 4e-07 | |
TIGR03600 | 421 | TIGR03600, phage_DnaB, phage replicative helicase, DnaB | 1e-20 | |
PRK08506 | 472 | PRK08506, PRK08506, replicative DNA helicase; Provision | 1e-18 | |
COG1066 | 456 | COG1066, Sms, Predicted ATP-dependent serine protease [ | 0.001 | |
PRK05973 | 237 | PRK05973, PRK05973, replicative DNA helicase; Provision | 2e-06 | |
cd01122 | 271 | cd01122, GP4d_helicase, GP4d_helicase is a homohexameri | 5e-04 | |
COG0467 | 260 | COG0467, RAD55, RecA-superfamily ATPases implicated in | 5e-04 | |
cd01121 | 372 | cd01121, Sms, Sms (bacterial radA) DNA repair protein | 0.002 | |
PHA02542 | 473 | PHA02542, 41, 41 helicase; Provisional | 0.004 | |
COG0468 | 279 | COG0468, RecA, RecA/RadA recombinase [DNA replication, | 0.002 |
>gnl|CDD|161985 TIGR00665, DnaB, replicative DNA helicase | Back alignment and domain information |
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>gnl|CDD|181676 PRK09165, PRK09165, replicative DNA helicase; Provisional | Back alignment and domain information |
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>gnl|CDD|30653 COG0305, DnaB, Replicative DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
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>gnl|CDD|29985 cd00984, DnaB_C, DnaB helicase C terminal domain | Back alignment and domain information |
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>gnl|CDD|146436 pfam03796, DnaB_C, DnaB-like helicase C terminal domain | Back alignment and domain information |
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>gnl|CDD|181111 PRK07773, PRK07773, replicative DNA helicase; Validated | Back alignment and domain information |
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>gnl|CDD|168658 PRK06749, PRK06749, replicative DNA helicase; Provisional | Back alignment and domain information |
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>gnl|CDD|181547 PRK08760, PRK08760, replicative DNA helicase; Provisional | Back alignment and domain information |
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>gnl|CDD|180157 PRK05595, PRK05595, replicative DNA helicase; Provisional | Back alignment and domain information |
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>gnl|CDD|180232 PRK05748, PRK05748, replicative DNA helicase; Provisional | Back alignment and domain information |
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>gnl|CDD|180791 PRK07004, PRK07004, replicative DNA helicase; Provisional | Back alignment and domain information |
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>gnl|CDD|181193 PRK08006, PRK08006, replicative DNA helicase; Provisional | Back alignment and domain information |
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>gnl|CDD|181562 PRK08840, PRK08840, replicative DNA helicase; Provisional | Back alignment and domain information |
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>gnl|CDD|136106 PRK06904, PRK06904, replicative DNA helicase; Validated | Back alignment and domain information |
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>gnl|CDD|180177 PRK05636, PRK05636, replicative DNA helicase; Provisional | Back alignment and domain information |
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>gnl|CDD|180528 PRK06321, PRK06321, replicative DNA helicase; Provisional | Back alignment and domain information |
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>gnl|CDD|132639 TIGR03600, phage_DnaB, phage replicative helicase, DnaB family, HK022 subfamily | Back alignment and domain information |
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>gnl|CDD|181451 PRK08506, PRK08506, replicative DNA helicase; Provisional | Back alignment and domain information |
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>gnl|CDD|31265 COG1066, Sms, Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
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>gnl|CDD|168322 PRK05973, PRK05973, replicative DNA helicase; Provisional | Back alignment and domain information |
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>gnl|CDD|29988 cd01122, GP4d_helicase, GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
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>gnl|CDD|30815 COG0467, RAD55, RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] | Back alignment and domain information |
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>gnl|CDD|29987 cd01121, Sms, Sms (bacterial radA) DNA repair protein | Back alignment and domain information |
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>gnl|CDD|177377 PHA02542, 41, 41 helicase; Provisional | Back alignment and domain information |
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>gnl|CDD|30816 COG0468, RecA, RecA/RadA recombinase [DNA replication, recombination, and repair] | Back alignment and domain information |
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Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 266 | replicative DNA helicase [Candidatus Liberibacter asiat | ||
PRK07773 | 868 | replicative DNA helicase; Validated | 100.0 | |
PRK09165 | 484 | replicative DNA helicase; Provisional | 100.0 | |
PRK07004 | 460 | replicative DNA helicase; Provisional | 100.0 | |
PRK05636 | 507 | replicative DNA helicase; Provisional | 100.0 | |
PRK08506 | 473 | replicative DNA helicase; Provisional | 100.0 | |
PRK08760 | 476 | replicative DNA helicase; Provisional | 100.0 | |
PRK08694 | 468 | consensus | 100.0 | |
PRK06321 | 472 | replicative DNA helicase; Provisional | 100.0 | |
PRK08082 | 453 | consensus | 100.0 | |
PRK05595 | 444 | replicative DNA helicase; Provisional | 100.0 | |
PRK07263 | 453 | consensus | 100.0 | |
PRK05748 | 448 | replicative DNA helicase; Provisional | 100.0 | |
PRK08840 | 464 | replicative DNA helicase; Provisional | 100.0 | |
PRK06904 | 472 | replicative DNA helicase; Validated | 100.0 | |
PRK08006 | 471 | replicative DNA helicase; Provisional | 100.0 | |
COG0305 | 435 | DnaB Replicative DNA helicase [DNA replication, recombi | 100.0 | |
TIGR03600 | 421 | phage_DnaB phage replicative helicase, DnaB family, HK0 | 100.0 | |
PRK06749 | 428 | replicative DNA helicase; Provisional | 100.0 | |
TIGR00665 | 465 | DnaB replicative DNA helicase; InterPro: IPR007692 This | 100.0 | |
) from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins.." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=TIGR02639">TIGR02639 | 774 | ClpA ATP-dependent Clp protease ATP-binding subunit Clp | 96.22 | |
pfam03796 | 186 | DnaB_C DnaB-like helicase C terminal domain. The hexame | 99.98 | |
cd00984 | 242 | DnaB_C DnaB helicase C terminal domain. The hexameric h | 99.96 | |
cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'-3' he | 99.94 | |
cd01121 | 372 | Sms Sms (bacterial radA) DNA repair protein. This prote | 99.48 | |
PRK11823 | 454 | DNA repair protein RadA; Provisional | 99.42 | |
PRK09302 | 501 | circadian clock protein KaiC; Reviewed | 99.37 | |
TIGR00416 | 481 | sms DNA repair protein RadA; InterPro: IPR004504 RadA/S | 99.28 | |
COG1066 | 456 | Sms Predicted ATP-dependent serine protease [Posttransl | 99.28 | |
KOG2373 | 514 | consensus | 98.82 | |
pfam00154 | 322 | RecA recA bacterial DNA recombination protein. RecA is | 98.56 | |
cd00983 | 325 | recA RecA is a bacterial enzyme which has roles in homo | 98.52 | |
pfam08423 | 261 | Rad51 Rad51. Rad51 is a DNA repair and recombination pr | 98.43 | |
PRK09354 | 350 | recA recombinase A; Provisional | 98.33 | |
COG0468 | 279 | RecA RecA/RadA recombinase [DNA replication, recombinat | 98.32 | |
PRK04301 | 318 | radA DNA repair and recombination protein RadA; Validat | 98.28 | |
PTZ00035 | 350 | Rad51; Provisional | 98.03 | |
PRK09519 | 790 | recA recombinase A; Reviewed | 97.88 | |
TIGR02237 | 223 | recomb_radB DNA repair and recombination protein RadB; | 97.71 | |
PRK06526 | 254 | transposase; Provisional | 97.61 | |
PRK08116 | 262 | hypothetical protein; Validated | 97.19 | |
PRK08181 | 269 | transposase; Validated | 97.08 | |
PRK06921 | 265 | hypothetical protein; Provisional | 97.0 | |
TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC; InterPro: IPR01 | 96.89 | |
PRK07952 | 242 | DNA replication protein DnaC; Validated | 96.76 | |
cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleotide e | 96.62 | |
PRK05703 | 412 | flhF flagellar biosynthesis regulator FlhF; Validated | 96.56 | |
TIGR03499 | 282 | FlhF flagellar biosynthetic protein FlhF. | 96.54 | |
PRK10865 | 857 | protein disaggregation chaperone; Provisional | 96.54 | |
cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, invol | 96.54 | |
cd03115 | 173 | SRP The signal recognition particle (SRP) mediates the | 96.45 | |
pfam00448 | 196 | SRP54 SRP54-type protein, GTPase domain. This family in | 96.44 | |
cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-lik | 96.28 | |
COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Transcrip | 96.27 | |
TIGR02012 | 322 | tigrfam_recA protein RecA; InterPro: IPR001553 The recA | 96.25 | |
PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provisiona | 96.24 | |
cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in cyto | 96.21 | |
cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter nucle | 96.2 | |
cd03246 | 173 | ABCC_Protease_Secretion This family represents the ABC | 96.16 | |
PRK06995 | 404 | flhF flagellar biosynthesis regulator FlhF; Validated | 96.02 | |
PRK06835 | 330 | DNA replication protein DnaC; Validated | 95.97 | |
PRK07471 | 363 | DNA polymerase III subunit delta'; Validated | 95.97 | |
pfam02492 | 174 | cobW CobW/HypB/UreG, nucleotide-binding domain. This do | 95.91 | |
cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding proteins | 95.86 | |
PRK13640 | 283 | cbiO cobalt transporter ATP-binding subunit; Provisiona | 95.85 | |
cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain I of | 95.81 | |
COG1618 | 179 | Predicted nucleotide kinase [Nucleotide transport and m | 95.8 | |
PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provisiona | 95.77 | |
cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II of t | 95.74 | |
cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (PDR) f | 95.65 | |
COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog [Gene | 95.65 | |
cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pigment | 95.6 | |
PRK08939 | 306 | primosomal protein DnaI; Reviewed | 95.53 | |
cd02028 | 179 | UMPK_like Uridine monophosphate kinase_like (UMPK_like) | 95.44 | |
PRK03846 | 198 | adenylylsulfate kinase; Provisional | 95.4 | |
PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provisiona | 95.37 | |
COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransferase | 95.36 | |
PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provisional | 95.35 | |
PRK11650 | 358 | ugpC glycerol-3-phosphate transporter ATP-binding subun | 95.34 | |
TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTERM lo | 95.33 | |
COG4987 | 573 | CydC ABC-type transport system involved in cytochrome b | 95.32 | |
CHL00095 | 823 | clpC Clp protease ATP binding subunit | 95.32 | |
TIGR02236 | 333 | recomb_radA DNA repair and recombination protein RadA; | 95.31 | |
PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provisiona | 95.29 | |
PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 95.26 | |
cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-bi | 95.25 | |
cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-like (P | 95.25 | |
cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) tr | 95.25 | |
PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Provision | 95.22 | |
TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-binding pro | 95.22 | |
PRK09452 | 378 | potA putrescine/spermidine ABC transporter ATPase prote | 95.22 | |
KOG1434 | 335 | consensus | 95.21 | |
PRK13549 | 513 | xylose transporter ATP-binding subunit; Provisional | 95.21 | |
pfam03266 | 168 | DUF265 Protein of unknown function, DUF265. | 95.19 | |
PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provisiona | 95.19 | |
PRK00440 | 318 | rfc replication factor C small subunit; Reviewed | 95.15 | |
PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Validated | 95.14 | |
TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC; InterPro: IPR01 | 95.11 | |
cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor ( | 95.11 | |
PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provisiona | 95.11 | |
PRK13632 | 273 | cbiO cobalt transporter ATP-binding subunit; Provisiona | 95.1 | |
PRK05541 | 176 | adenylylsulfate kinase; Provisional | 95.09 | |
PRK13650 | 276 | cbiO cobalt transporter ATP-binding subunit; Provisiona | 95.08 | |
PRK08084 | 235 | DNA replication initiation factor; Provisional | 95.04 | |
COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase compon | 95.03 | |
PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding protein; P | 95.02 | |
cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involved in | 95.01 | |
PRK10522 | 547 | multidrug transporter membrane component/ATP-binding co | 94.99 | |
PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provisiona | 94.97 | |
PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-binding pr | 94.93 | |
PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 94.93 | |
PRK04195 | 403 | replication factor C large subunit; Provisional | 94.93 | |
PRK13634 | 276 | cbiO cobalt transporter ATP-binding subunit; Provisiona | 94.92 | |
PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Provisi | 94.9 | |
PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provisiona | 94.9 | |
PRK00889 | 175 | adenylylsulfate kinase; Provisional | 94.89 | |
cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-b | 94.85 | |
PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; Provi | 94.84 | |
PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; Provis | 94.8 | |
COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase component | 94.78 | |
PRK11701 | 258 | phnK phosphonates transport ATP-binding protein; Provis | 94.76 | |
PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provisiona | 94.75 | |
cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the ATPa | 94.74 | |
cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding component | 94.73 | |
PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 94.69 | |
PRK10908 | 222 | cell division protein FtsE; Provisional | 94.67 | |
cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNa | 94.66 | |
PRK06893 | 229 | DNA replication initiation factor; Validated | 94.63 | |
PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 94.61 | |
PRK13647 | 273 | cbiO cobalt transporter ATP-binding subunit; Provisiona | 94.56 | |
PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-binding | 94.55 | |
PRK13633 | 281 | cobalt transporter ATP-binding subunit; Provisional | 94.52 | |
cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, closely | 94.49 | |
cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor | 94.46 | |
PRK10744 | 257 | phosphate transporter subunit; Provisional | 94.44 | |
cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter | 94.43 | |
PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; Provi | 94.39 | |
TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, comp | 94.38 | |
cd03234 | 226 | ABCG_White The White subfamily represents ABC transport | 94.35 | |
PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subunit; Pr | 94.33 | |
PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; Provi | 94.33 | |
PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; Prov | 94.32 | |
KOG0061 | 613 | consensus | 94.3 | |
pfam01583 | 157 | APS_kinase Adenylylsulphate kinase. Enzyme that catalys | 94.29 | |
PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provisiona | 94.28 | |
PRK08727 | 233 | hypothetical protein; Validated | 94.27 | |
CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 94.17 | |
cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ07 | 94.14 | |
COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase component | 94.11 | |
cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-binding p | 94.1 | |
cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute Trans | 94.09 | |
cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the glycine | 94.08 | |
TIGR00763 | 941 | lon ATP-dependent protease La; InterPro: IPR004815 Prot | 94.0 | |
cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding com | 94.0 | |
cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transporter c | 93.99 | |
COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA | 93.98 | |
cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is of f | 93.96 | |
cd02027 | 149 | APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyze | 93.84 | |
cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonate tra | 93.82 | |
PRK10261 | 623 | glutathione transporter ATP-binding protein; Provisiona | 93.78 | |
PRK11819 | 556 | putative ABC transporter ATP-binding protein; Reviewed | 93.71 | |
cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Antigen P | 93.69 | |
PRK09984 | 262 | phosphonate/organophosphate ester transporter subunit; | 93.68 | |
PRK13539 | 206 | cytochrome c biogenesis protein CcmA; Provisional | 93.66 | |
cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-associate | 93.6 | |
PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provisiona | 93.59 | |
PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; Prov | 93.59 | |
COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPase com | 93.58 | |
cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This | 93.56 | |
PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; Prov | 93.54 | |
PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter subunit | 93.5 | |
PRK09473 | 330 | oppD oligopeptide transporter ATP-binding component; Pr | 93.48 | |
PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provisiona | 93.44 | |
cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-type tr | 93.44 | |
PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisional | 93.41 | |
cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of the L | 93.39 | |
PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; Prov | 93.38 | |
cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Binding | 93.31 | |
cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type tr | 93.23 | |
PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-binding | 93.23 | |
PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provisiona | 93.16 | |
PRK13542 | 224 | consensus | 93.15 | |
PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit; Pro | 93.12 | |
cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibr | 93.12 | |
COG4133 | 209 | CcmA ABC-type transport system involved in cytochrome c | 93.11 | |
PRK10895 | 241 | putative ABC transporter ATP-binding protein YhbG; Prov | 93.0 | |
cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor S | 92.97 | |
PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 92.97 | |
cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component of a | 92.95 | |
PRK10636 | 638 | putative ABC transporter ATP-binding protein; Provision | 92.92 | |
cd03299 | 235 | ABC_ModC_like Archeal protein closely related to ModC. | 92.91 | |
PRK10938 | 490 | putative molybdenum transport ATP-binding protein ModF; | 92.9 | |
cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cyt | 92.9 | |
cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter subfamil | 92.88 | |
PRK10851 | 352 | sulfate/thiosulfate transporter subunit; Provisional | 92.88 | |
PRK05506 | 613 | bifunctional sulfate adenylyltransferase subunit 1/aden | 92.85 | |
PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provisiona | 92.84 | |
cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibr | 92.82 | |
PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisional | 92.79 | |
TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IISP) Fa | 92.79 | |
PRK10419 | 266 | nikE nickel transporter ATP-binding protein; Provisiona | 92.77 | |
TIGR00955 | 671 | 3a01204 Pigment precourser permease; InterPro: IPR00528 | 92.76 | |
TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, ATP- | 92.75 | |
COG0563 | 178 | Adk Adenylate kinase and related kinases [Nucleotide tr | 92.75 | |
PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP-bindi | 92.74 | |
PRK11022 | 327 | dppD dipeptide transporter ATP-binding subunit; Provisi | 92.65 | |
cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in drug | 92.64 | |
cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the maltose | 92.56 | |
PRK12727 | 557 | flagellar biosynthesis regulator FlhF; Provisional | 92.53 | |
cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is a cen | 92.5 | |
cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the YhbG fam | 92.5 | |
PRK09536 | 409 | btuD corrinoid ABC transporter ATPase; Reviewed | 92.49 | |
TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC transpor | 92.46 | |
PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Reviewed | 92.41 | |
TIGR02673 | 215 | FtsE cell division ATP-binding protein FtsE; InterPro: | 92.4 | |
COG0541 | 451 | Ffh Signal recognition particle GTPase [Intracellular t | 92.32 | |
PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding subunit | 92.3 | |
cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is the | 92.19 | |
KOG0057 | 591 | consensus | 92.15 | |
PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; Prov | 92.14 | |
COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase and pe | 91.99 | |
cd03114 | 148 | ArgK-like The function of this protein family is unkown | 91.98 | |
PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein; Rev | 91.92 | |
PRK10463 | 290 | hydrogenase nickel incorporation protein HypB; Provisio | 91.91 | |
cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a | 91.9 | |
PRK10789 | 569 | putative multidrug transporter membrane\ATP-binding com | 91.84 | |
cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This | 91.76 | |
PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 91.68 | |
cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase component o | 91.63 | |
TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding prote | 91.61 | |
cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known as Yus | 91.61 | |
TIGR02928 | 383 | TIGR02928 orc1/cdc6 family replication initiation prote | 91.56 | |
TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, DevA | 91.49 | |
PRK13544 | 208 | consensus | 91.44 | |
cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin exporte | 91.44 | |
cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC component | 91.38 | |
PRK11147 | 632 | ABC transporter ATPase component; Reviewed | 91.28 | |
cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporte | 91.22 | |
cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette | 90.96 | |
PRK11264 | 248 | putative amino-acid ABC transporter ATP-binding protein | 90.88 | |
PRK13409 | 590 | putative ATPase RIL; Provisional | 90.72 | |
cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tranpor | 90.69 | |
TIGR01968 | 272 | minD_bact septum site-determining protein MinD; InterPr | 90.39 | |
TIGR00073 | 225 | hypB hydrogenase accessory protein HypB; InterPro: IPR0 | 90.2 | |
cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily represent | 90.15 | |
cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC component o | 90.1 | |
TIGR02203 | 603 | MsbA_lipidA lipid A export permease/ATP-binding protein | 90.09 | |
PRK10418 | 254 | nikD nickel transporter ATP-binding protein; Provisiona | 90.01 | |
PRK05973 | 237 | replicative DNA helicase; Provisional | 99.88 | |
pfam06745 | 231 | KaiC KaiC. This family represents a conserved region wi | 99.37 | |
PRK04328 | 250 | hypothetical protein; Provisional | 99.35 | |
PRK06067 | 241 | flagellar accessory protein FlaH; Validated | 99.33 | |
PRK09302 | 501 | circadian clock protein KaiC; Reviewed | 99.3 | |
PRK09361 | 224 | radB DNA repair and recombination protein RadB; Provisi | 99.26 | |
cd01394 | 218 | radB RadB. The archaeal protein radB shares similarity | 99.23 | |
COG0467 | 260 | RAD55 RecA-superfamily ATPases implicated in signal tra | 99.11 | |
cd01123 | 235 | Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recomb | 98.96 | |
PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 98.9 | |
cd01393 | 226 | recA_like RecA is a bacterial enzyme which has roles in | 98.76 | |
cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily found | 98.59 | |
cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family includ | 98.29 | |
cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is encod | 97.97 | |
COG2874 | 235 | FlaH Predicted ATPases involved in biogenesis of archae | 97.87 | |
PRK09183 | 258 | transposase/IS protein; Provisional | 97.23 | |
pfam01695 | 178 | IstB IstB-like ATP binding protein. This protein contai | 97.2 | |
PRK12377 | 248 | putative replication protein; Provisional | 97.14 | |
pfam09140 | 261 | MipZ ATPase MipZ. MipZ is an ATPase that forms a comple | 97.11 | |
pfam06068 | 395 | TIP49 TIP49 C-terminus. This family consists of the C-t | 97.1 | |
KOG1433 | 326 | consensus | 97.04 | |
cd02035 | 217 | ArsA ArsA ATPase functionas as an efflux pump located o | 97.04 | |
COG1224 | 450 | TIP49 DNA helicase TIP49, TBP-interacting protein [Tran | 96.97 | |
PRK13764 | 605 | ATPase; Provisional | 96.86 | |
smart00382 | 148 | AAA ATPases associated with a variety of cellular activ | 96.83 | |
COG3598 | 402 | RepA RecA-family ATPase [DNA replication, recombination | 96.81 | |
COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, and rep | 96.75 | |
cd00550 | 254 | ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This | 96.71 | |
COG1855 | 604 | ATPase (PilT family) [General function prediction only] | 96.66 | |
PRK06696 | 227 | uridine kinase; Validated | 96.65 | |
TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. Member | 96.52 | |
TIGR03029 | 274 | EpsG chain length determinant protein tyrosine kinase E | 96.39 | |
PRK09841 | 726 | cryptic autophosphorylating protein tyrosine kinase Etk | 96.36 | |
cd02038 | 139 | FleN-like FleN is a member of the Fer4_NifH superfamily | 96.32 | |
CHL00060 | 480 | atpB ATP synthase CF1 beta subunit | 96.28 | |
PRK11519 | 720 | tyrosine kinase; Provisional | 96.25 | |
cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide variety of | 96.25 | |
COG1484 | 254 | DnaC DNA replication protein [DNA replication, recombin | 96.19 | |
cd01133 | 274 | F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide | 96.19 | |
KOG2680 | 454 | consensus | 96.18 | |
PRK12597 | 459 | F0F1 ATP synthase subunit beta; Provisional | 95.94 | |
PRK09280 | 466 | F0F1 ATP synthase subunit beta; Validated | 95.88 | |
cd02040 | 270 | NifH NifH gene encodes component II (iron protein) of n | 95.74 | |
PRK07667 | 190 | uridine kinase; Provisional | 95.72 | |
TIGR03305 | 449 | alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. | 95.7 | |
PRK11034 | 758 | clpA ATP-dependent Clp protease ATP-binding subunit; Pr | 95.7 | |
TIGR00345 | 330 | arsA arsenite-activated ATPase (arsA); InterPro: IPR003 | 95.56 | |
TIGR02173 | 173 | cyt_kin_arch cytidylate kinase, putative; InterPro: IPR | 95.55 | |
cd02036 | 179 | MinD Bacterial cell division requires the formation of | 95.51 | |
pfam00142 | 269 | Fer4_NifH 4Fe-4S iron sulfur cluster binding proteins, | 95.51 | |
pfam01656 | 212 | CbiA CobQ/CobB/MinD/ParA nucleotide binding domain. Thi | 95.46 | |
CHL00175 | 279 | minD septum-site determining protein; Validated | 95.46 | |
TIGR03371 | 246 | cellulose_yhjQ cellulose synthase operon protein YhjQ. | 95.46 | |
KOG1564 | 351 | consensus | 95.44 | |
PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 95.35 | |
PRK10818 | 270 | cell division inhibitor MinD; Provisional | 95.31 | |
cd02037 | 169 | MRP-like MRP (Multiple Resistance and pH adaptation) is | 95.31 | |
cd02034 | 116 | CooC The accessory protein CooC, which contains a nucle | 95.31 | |
cd01983 | 99 | Fer4_NifH The Fer4_NifH superfamily contains a variety | 95.29 | |
pfam06564 | 244 | YhjQ YhjQ protein. This family consists of several bact | 95.12 | |
PRK11784 | 333 | tRNA 2-selenouridine synthase; Provisional | 95.02 | |
pfam00006 | 213 | ATP-synt_ab ATP synthase alpha/beta family, nucleotide- | 95.01 | |
TIGR03018 | 207 | pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosi | 94.95 | |
PRK13695 | 174 | putative NTPase; Provisional | 94.93 | |
PRK09112 | 352 | DNA polymerase III subunit delta'; Validated | 94.88 | |
PRK09270 | 230 | frcK putative fructose transport system kinase; Reviewe | 94.85 | |
PRK06851 | 368 | hypothetical protein; Provisional | 94.84 | |
TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Members | 94.81 | |
pfam01637 | 223 | Arch_ATPase Archaeal ATPase. This family contain a cons | 94.78 | |
pfam05729 | 165 | NACHT NACHT domain. This NTPase domain is found in apop | 94.69 | |
COG0489 | 265 | Mrp ATPases involved in chromosome partitioning [Cell d | 94.67 | |
COG2894 | 272 | MinD Septum formation inhibitor-activating ATPase [Cell | 94.67 | |
cd03111 | 106 | CpaE_like This protein family consists of proteins simi | 94.61 | |
PHA02518 | 211 | ParA-like protein; Provisional | 94.57 | |
cd01132 | 274 | F1_ATPase_alpha F1 ATP synthase alpha, central domain. | 94.54 | |
PRK06315 | 442 | type III secretion system ATPase; Provisional | 94.47 | |
PRK10490 | 895 | sensor protein KdpD; Provisional | 94.39 | |
pfam02702 | 211 | KdpD Osmosensitive K+ channel His kinase sensor domain. | 94.38 | |
PRK08903 | 227 | hypothetical protein; Validated | 94.33 | |
PRK09281 | 502 | F0F1 ATP synthase subunit alpha; Validated | 94.32 | |
cd02117 | 212 | NifH_like This family contains the NifH (iron protein) | 94.29 | |
PRK07165 | 507 | F0F1 ATP synthase subunit alpha; Validated | 94.26 | |
PRK13869 | 405 | plasmid-partitioning protein RepA; Provisional | 94.25 | |
PRK10037 | 250 | cell division protein; Provisional | 94.17 | |
cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), | 94.12 | |
PRK05642 | 234 | DNA replication initiation factor; Validated | 94.06 | |
CHL00059 | 501 | atpA ATP synthase CF1 alpha subunit | 94.01 | |
TIGR00750 | 333 | lao LAO/AO transport system ATPase; InterPro: IPR005129 | 93.92 | |
PRK08927 | 441 | fliI flagellum-specific ATP synthase; Validated | 93.84 | |
cd02025 | 220 | PanK Pantothenate kinase (PanK) catalyzes the phosphory | 93.81 | |
PHA02519 | 387 | plasmid partition protein SopA; Reviewed | 93.77 | |
PRK13705 | 388 | plasmid-partitioning protein SopA; Provisional | 93.7 | |
TIGR03324 | 497 | alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. | 93.65 | |
cd01135 | 276 | V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subu | 93.55 | |
TIGR03453 | 387 | partition_RepA plasmid partitioning protein RepA. Membe | 93.54 | |
PRK13343 | 502 | F0F1 ATP synthase subunit alpha; Provisional | 93.5 | |
PRK11670 | 369 | putative ATPase; Provisional | 93.42 | |
PRK10787 | 784 | DNA-binding ATP-dependent protease La; Provisional | 93.42 | |
TIGR02640 | 265 | gas_vesic_GvpN gas vesicle protein GvpN; InterPro: IPR0 | 93.4 | |
pfam03308 | 267 | ArgK ArgK protein. The ArgK protein acts as an ATPase e | 92.89 | |
COG0455 | 262 | flhG Antiactivator of flagellar biosynthesis FleN, an A | 92.81 | |
cd02042 | 104 | ParA ParA and ParB of Caulobacter crescentus belong to | 92.68 | |
pfam07728 | 139 | AAA_5 AAA domain (dynein-related subfamily). This Pfam | 92.59 | |
TIGR03498 | 418 | FliI_clade3 flagellar protein export ATPase FliI. Membe | 92.48 | |
PRK13849 | 231 | putative crown gall tumor protein VirC1; Provisional | 92.21 | |
cd01136 | 326 | ATPase_flagellum-secretory_path_III Flagellum-specific | 92.15 | |
PRK09435 | 325 | arginine/ornithine transport system ATPase; Provisional | 92.12 | |
KOG1942 | 456 | consensus | 92.08 | |
cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucleotide | 92.04 | |
pfam00485 | 196 | PRK Phosphoribulokinase / Uridine kinase family. In Ara | 92.03 | |
cd02032 | 267 | Bchl_like This family of proteins contains bchL and chl | 91.95 | |
TIGR02902 | 532 | spore_lonB ATP-dependent protease LonB; InterPro: IPR01 | 91.95 | |
COG3854 | 308 | SpoIIIAA ncharacterized protein conserved in bacteria [ | 91.73 | |
PRK07960 | 455 | fliI flagellum-specific ATP synthase; Validated | 91.71 | |
PRK07721 | 435 | fliI flagellum-specific ATP synthase; Validated | 91.65 | |
pfam07088 | 484 | GvpD GvpD gas vesicle protein. This family consists of | 91.64 | |
PRK08149 | 427 | ATP synthase SpaL; Validated | 91.13 | |
KOG0065 | 1391 | consensus | 91.03 | |
TIGR03497 | 413 | FliI_clade2 flagellar protein export ATPase FliI. Membe | 90.99 | |
PRK09099 | 441 | type III secretion system ATPase; Provisional | 90.47 | |
PRK06936 | 439 | type III secretion system ATPase; Provisional | 90.43 | |
TIGR01587 | 424 | cas3_core CRISPR-associated helicase Cas3; InterPro: IP | 90.43 | |
KOG3022 | 300 | consensus | 90.3 | |
pfam05496 | 234 | RuvB_N Holliday junction DNA helicase ruvB N-terminus. | 90.26 | |
smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 90.24 | |
PRK04196 | 460 | V-type ATP synthase subunit B; Provisional | 90.21 | |
PRK08472 | 435 | fliI flagellum-specific ATP synthase; Validated | 90.18 | |
pfam07726 | 131 | AAA_3 ATPase family associated with various cellular ac | 90.08 | |
cd01129 | 264 | PulE-GspE PulE/GspE The type II secretory pathway is th | 90.08 | |
pfam01580 | 202 | FtsK_SpoIIIE FtsK/SpoIIIE family. FtsK has extensive se | 90.07 | |
TIGR01005 | 778 | eps_transp_fam exopolysaccharide transport protein fami | 90.07 | |
PRK05480 | 209 | uridine kinase; Provisional | 90.01 | |
PRK09401 | 1176 | reverse gyrase; Reviewed | 96.87 | |
TIGR01054 | 1843 | rgy reverse gyrase; InterPro: IPR005736 DNA topoisomera | 96.39 | |
COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPase com | 94.99 | |
TIGR02546 | 430 | III_secr_ATP type III secretion apparatus H+-transporti | 94.66 | |
COG0378 | 202 | HypB Ni2+-binding GTPase involved in regulation of expr | 94.46 | |
KOG1806 | 1320 | consensus | 93.89 | |
TIGR00635 | 305 | ruvB Holliday junction DNA helicase RuvB; InterPro: IPR | 92.16 | |
PRK06793 | 432 | fliI flagellum-specific ATP synthase; Validated | 91.63 | |
TIGR02746 | 900 | TraC-F-type type-IV secretion system protein TraC; Inte | 90.08 | |
TIGR03346 | 852 | chaperone_ClpB ATP-dependent chaperone ClpB. Members of | 96.72 | |
TIGR00956 | 1466 | 3a01205 Pleiotropic Drug Resistance (PDR) Family protei | 95.84 | |
PRK13636 | 285 | cbiO cobalt transporter ATP-binding subunit; Provisiona | 95.3 | |
PRK13651 | 304 | cobalt transporter ATP-binding subunit; Provisional | 95.3 | |
PRK13768 | 253 | GTPase; Provisional | 93.53 | |
PRK07594 | 433 | type III secretion system ATPase; Validated | 91.94 | |
PRK05922 | 434 | type III secretion system ATPase; Validated | 91.47 | |
TIGR03496 | 411 | FliI_clade1 flagellar protein export ATPase FliI. Membe | 90.77 | |
pfam02374 | 304 | ArsA_ATPase Anion-transporting ATPase. This Pfam family | 96.2 | |
PRK04040 | 189 | adenylate kinase; Provisional | 94.79 | |
pfam00931 | 285 | NB-ARC NB-ARC domain. | 92.52 | |
KOG2825 | 323 | consensus | 92.32 | |
PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisional | 92.15 | |
cd02030 | 219 | NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) i | 91.65 | |
PRK00090 | 223 | bioD dithiobiotin synthetase; Reviewed | 91.47 | |
PRK00091 | 304 | miaA tRNA delta(2)-isopentenylpyrophosphate transferase | 91.37 | |
PRK13233 | 275 | nifH nitrogenase reductase; Reviewed | 91.17 | |
PRK12339 | 197 | 2-phosphoglycerate kinase; Provisional | 91.05 | |
TIGR00174 | 307 | miaA tRNA delta(2)-isopentenylpyrophosphate transferase | 90.61 | |
PRK13185 | 269 | chlL protochlorophyllide reductase iron-sulfur ATP-bind | 90.05 | |
PRK04841 | 903 | transcriptional regulator MalT; Provisional | 96.04 | |
PRK13230 | 292 | nitrogenase reductase-like protein; Reviewed | 94.81 | |
cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domain II; | 94.48 | |
TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, comp | 93.59 | |
PRK13232 | 273 | nifH nitrogenase reductase; Reviewed | 93.06 | |
PRK06761 | 281 | hypothetical protein; Provisional | 92.62 | |
pfam09848 | 348 | DUF2075 Uncharacterized conserved protein (DUF2075). Th | 92.43 | |
PRK02362 | 736 | ski2-like helicase; Provisional | 90.98 | |
PRK10535 | 648 | macrolide transporter ATP-binding /permease protein; Pr | 90.41 | |
pfam08433 | 266 | KTI12 Chromatin associated protein KTI12. This is a fam | 95.49 | |
COG0003 | 322 | ArsA Predicted ATPase involved in chromosome partitioni | 94.39 | |
PRK06851 | 368 | hypothetical protein; Provisional | 94.71 | |
PRK12402 | 337 | replication factor C small subunit 2; Reviewed | 94.64 | |
PTZ00243 | 1560 | ABC transporter; Provisional | 94.13 | |
COG1192 | 259 | Soj ATPases involved in chromosome partitioning [Cell d | 93.12 | |
PRK13641 | 286 | cbiO cobalt transporter ATP-binding subunit; Provisiona | 92.49 | |
PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisional | 92.38 | |
KOG0054 | 1381 | consensus | 92.33 | |
KOG0733 | 802 | consensus | 92.24 | |
pfam07015 | 231 | VirC1 VirC1 protein. This family consists of several ba | 92.11 | |
COG0464 | 494 | SpoVK ATPases of the AAA+ class [Posttranslational modi | 91.19 | |
PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 90.5 | |
KOG3347 | 176 | consensus | 90.35 | |
PRK06547 | 184 | hypothetical protein; Provisional | 90.3 | |
pfam06414 | 191 | Zeta_toxin Zeta toxin. This family consists of several | 90.23 | |
COG4088 | 261 | Predicted nucleotide kinase [Nucleotide transport and m | 94.55 | |
pfam00772 | 103 | DnaB DnaB-like helicase N terminal domain. The hexameri | 94.48 | |
pfam03029 | 234 | ATP_bind_1 Conserved hypothetical ATP binding protein. | 91.87 |
>PRK07773 replicative DNA helicase; Validated | Back alignment and domain information |
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>PRK09165 replicative DNA helicase; Provisional | Back alignment and domain information |
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>PRK07004 replicative DNA helicase; Provisional | Back alignment and domain information |
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>PRK05636 replicative DNA helicase; Provisional | Back alignment and domain information |
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>PRK08506 replicative DNA helicase; Provisional | Back alignment and domain information |
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>PRK08760 replicative DNA helicase; Provisional | Back alignment and domain information |
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>PRK08694 consensus | Back alignment and domain information |
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>PRK06321 replicative DNA helicase; Provisional | Back alignment and domain information |
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>PRK08082 consensus | Back alignment and domain information |
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>PRK05595 replicative DNA helicase; Provisional | Back alignment and domain information |
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>PRK07263 consensus | Back alignment and domain information |
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>PRK05748 replicative DNA helicase; Provisional | Back alignment and domain information |
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>PRK08840 replicative DNA helicase; Provisional | Back alignment and domain information |
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>PRK06904 replicative DNA helicase; Validated | Back alignment and domain information |
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>PRK08006 replicative DNA helicase; Provisional | Back alignment and domain information |
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>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
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>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily | Back alignment and domain information |
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>PRK06749 replicative DNA helicase; Provisional | Back alignment and domain information |
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>TIGR00665 DnaB replicative DNA helicase; InterPro: IPR007692 This family includes the replicative DNA helicases, helicase DnaB, which exhibit DNA-dependent ATPase activity | Back alignment and domain information |
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>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA ( |
Back alignment and domain information |
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>pfam03796 DnaB_C DnaB-like helicase C terminal domain | Back alignment and domain information |
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>cd00984 DnaB_C DnaB helicase C terminal domain | Back alignment and domain information |
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>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
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>cd01121 Sms Sms (bacterial radA) DNA repair protein | Back alignment and domain information |
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>PRK11823 DNA repair protein RadA; Provisional | Back alignment and domain information |
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>PRK09302 circadian clock protein KaiC; Reviewed | Back alignment and domain information |
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>TIGR00416 sms DNA repair protein RadA; InterPro: IPR004504 RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease | Back alignment and domain information |
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>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
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>KOG2373 consensus | Back alignment and domain information |
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>pfam00154 RecA recA bacterial DNA recombination protein | Back alignment and domain information |
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>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response | Back alignment and domain information |
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>pfam08423 Rad51 Rad51 | Back alignment and domain information |
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>PRK09354 recA recombinase A; Provisional | Back alignment and domain information |
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>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair] | Back alignment and domain information |
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>PRK04301 radA DNA repair and recombination protein RadA; Validated | Back alignment and domain information |
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>PTZ00035 Rad51; Provisional | Back alignment and domain information |
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>PRK09519 recA recombinase A; Reviewed | Back alignment and domain information |
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>TIGR02237 recomb_radB DNA repair and recombination protein RadB; InterPro: IPR011939 This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO) and DMC1 (IPR011940 from INTERPRO), and archaeal RadA (IPR011938 from INTERPRO) ,, | Back alignment and domain information |
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>PRK06526 transposase; Provisional | Back alignment and domain information |
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>PRK08116 hypothetical protein; Validated | Back alignment and domain information |
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>PRK08181 transposase; Validated | Back alignment and domain information |
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>PRK06921 hypothetical protein; Provisional | Back alignment and domain information |
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>TIGR02655 circ_KaiC circadian clock protein KaiC; InterPro: IPR013503 The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria | Back alignment and domain information |
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>PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
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>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
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>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
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>TIGR03499 FlhF flagellar biosynthetic protein FlhF | Back alignment and domain information |
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>PRK10865 protein disaggregation chaperone; Provisional | Back alignment and domain information |
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>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
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>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
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>pfam00448 SRP54 SRP54-type protein, GTPase domain | Back alignment and domain information |
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>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
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>COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
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>TIGR02012 tigrfam_recA protein RecA; InterPro: IPR001553 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response | Back alignment and domain information |
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>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
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>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
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>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
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>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
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>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
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>PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
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>PRK07471 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
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>pfam02492 cobW CobW/HypB/UreG, nucleotide-binding domain | Back alignment and domain information |
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>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
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>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
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>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
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>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
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>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
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>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
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>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
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>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
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>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
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>PRK08939 primosomal protein DnaI; Reviewed | Back alignment and domain information |
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>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
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>PRK03846 adenylylsulfate kinase; Provisional | Back alignment and domain information |
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>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
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>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
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>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
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>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
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>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
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>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
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>CHL00095 clpC Clp protease ATP binding subunit | Back alignment and domain information |
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>TIGR02236 recomb_radA DNA repair and recombination protein RadA; InterPro: IPR011938 This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO), and archaeal RadB (IPR011939 from INTERPRO) | Back alignment and domain information |
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>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
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>PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
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>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
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>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
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>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
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>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
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