254781152
hypothetical protein CLIBASIA_05295
GeneID in NCBI database: | 8210177 | Locus tag: | CLIBASIA_05295 |
Protein GI in NCBI database: | 254781152 | Protein Accession: | YP_003065565.1 |
Gene range: | +(1148576, 1149043) | Protein Length: | 155aa |
Gene description: | hypothetical protein | ||
COG prediction: | [S] Uncharacterized protein conserved in bacteria | ||
KEGG prediction: | hypothetical protein | ||
SEED prediction: | hypothetical protein | ||
Pathway involved in KEGG: | not defined | ||
Subsystem involved in SEED: | - none - | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 155 | hypothetical protein CLIBASIA_05295 [Candidatus Liberib | |||
315122541 | 223 | hypothetical protein CKC_03965 [Candidatus Liberibacter | 1 | 4e-39 | |
13471982 | 232 | hypothetical protein mll2129 [Mesorhizobium loti MAFF30 | 1 | 0.003 | |
18071243 | 217 | hypothetical protein PBC5p49 [Sinorhizobium phage PBC5] | 2 | 0.001 | |
240850004 | 107 | phage related protein [Bartonella grahamii as4aup] Leng | 2 | 0.002 |
>gi|315122541|ref|YP_004063030.1| hypothetical protein CKC_03965 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 223 | Back alignment and organism information |
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Score = 164 bits (415), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 80/111 (72%), Positives = 92/111 (82%), Gaps = 3/111 (2%) Query: 4 LYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEKEIIKAS- 62 +YDRGGS+PDNDKYIAGVCGCSIR+WR+IR +LEK NKIF + GNIYN RVEKE+IKA Sbjct: 36 MYDRGGSVPDNDKYIAGVCGCSIRKWRSIRIVLEKANKIFSKGGNIYNYRVEKEMIKAMK 95 Query: 63 --EERQENGRKGGIKSSQMRILSKKTNNLFQGTLKPAHVFQKPESINNYSA 111 EERQENGRKGGIKSSQMR L+ K NNLFQG L+ AH KPE+IN ++ Sbjct: 96 AIEERQENGRKGGIKSSQMRTLTHKNNNLFQGILESAHASYKPEAINKKTS 146 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|13471982|ref|NP_103549.1| hypothetical protein mll2129 [Mesorhizobium loti MAFF303099] Length = 232 | Back alignment and organism information |
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>gi|18071243|ref|NP_542309.1| hypothetical protein PBC5p49 [Sinorhizobium phage PBC5] Length = 217 | Back alignment and organism information |
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>gi|240850004|ref|YP_002971397.1| phage related protein [Bartonella grahamii as4aup] Length = 107 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 155 | hypothetical protein CLIBASIA_05295 [Candidatus Liberib | ||
pfam07120 | 88 | pfam07120, DUF1376, Protein of unknown function (DUF137 | 2e-09 | |
COG3756 | 153 | COG3756, COG3756, Uncharacterized protein conserved in | 2e-06 |
>gnl|CDD|148622 pfam07120, DUF1376, Protein of unknown function (DUF1376) | Back alignment and domain information |
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>gnl|CDD|33551 COG3756, COG3756, Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
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Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 155 | hypothetical protein CLIBASIA_05295 [Candidatus Liberib | ||
pfam07120 | 88 | DUF1376 Protein of unknown function (DUF1376). This fam | 99.38 | |
COG3756 | 153 | Uncharacterized protein conserved in bacteria [Function | 97.87 |
>pfam07120 DUF1376 Protein of unknown function (DUF1376) | Back alignment and domain information |
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>COG3756 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
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Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
No homologous structure with e-value below 0.005
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 155 | hypothetical protein CLIBASIA_05295 [Candidatus Liberib | ||
3lvg_D | 190 | LCB, clathrin light chain B; SELF assembly, coated PIT, | 0.004 |
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
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Score = 36.1 bits (82), Expect = 0.004 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 25/86 (29%) Query: 25 SIRRWR-NIRAILEKFN---KIFIQEGNIYNVRVEKEIIKASEERQE-NGRKGGIKSSQM 79 SIR+WR R L++ + K+ QE +E KA ++ +E N R +S Q+ Sbjct: 86 SIRKWREEQRKRLQELDAASKVMEQEW--------RE--KAKKDLEEWNQR----QSEQV 131 Query: 80 RILSKKTNNLFQGTLKPAHVFQKPES 105 K NN + +Q+P++ Sbjct: 132 E--KNKINN----RIADKAFYQQPDA 151 |
Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 155 | hypothetical protein CLIBASIA_05295 [Candidatus Liberib | ||
3go5_A | 285 | Multidomain protein with S1 RNA-binding domains; joint | 94.9 |
>3go5_A Multidomain protein with S1 RNA-binding domains; joint center for structural genomics, protein structure initiative, PSI-2; HET: MSE; 1.40A {Streptococcus pneumoniae TIGR4} | Back alignment and structure |
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Probab=94.90 E-value=0.035 Score=32.67 Aligned_cols=48 Identities=25% Similarity=0.173 Sum_probs=43.1 Q ss_pred CHHCCCCCCCCHH----HHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCEE Q ss_conf 1000489875027----99977719999999999999985391899389242 Q gi|254781152|r 3 SLYDRGGSIPDND----KYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIY 50 (155) Q Consensus 3 ~MYdrGgPL~~N~----r~LAg~CGCSvKkFr~aLd~Ll~~GKI~l~DG~LW 50 (155) .|.++||.++.+| +.+....|+|++.|-+|+-.|++.++|.+.+++++ T Consensus 232 ~L~~~~g~l~~~DkS~pe~I~~~f~~SK~~fK~aiG~L~K~~~I~~~~~~i~ 283 (285) T 3go5_A 232 YLESNGGFMTLNDKSSPDDIKATFGISKGQFKKALGGLMKAGKIKQDQFGTE 283 (285) T ss_dssp HHHHTTTEESCCTTSCHHHHHHHHSSCHHHHHHHHHHHHHTTCEEEETTEEE T ss_pred HHHHCCCEEECCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEECCEEE T ss_conf 9997699160699999999999879099999998567641865999499799 |
Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 90.00
Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
No hit with e-value below 0.005
Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 155 | hypothetical protein CLIBASIA_05295 [Candidatus Liberib | ||
3go5_A_220-285 | 66 | Multidomain protein with S1 RNA-binding domains; s | 95.3 |
>3go5_A (A:220-285) Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae TIGR4} | Back alignment and structure |
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Probab=95.30 E-value=0.032 Score=33.74 Aligned_cols=47 Identities=26% Similarity=0.187 Sum_probs=41.2 Q ss_pred HHCCCCCCCCHH----HHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCEE Q ss_conf 000489875027----99977719999999999999985391899389242 Q gi|254781152|r 4 LYDRGGSIPDND----KYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIY 50 (155) Q Consensus 4 MYdrGgPL~~N~----r~LAg~CGCSvKkFr~aLd~Ll~~GKI~l~DG~LW 50 (155) |=++||-+|.++ +.+..+.|+|++.|-+|+-.|++.++|.+.+++++ T Consensus 14 L~~~gG~lpl~DKS~pe~I~~~fg~SKkaFKrAiG~L~K~~~I~i~~~gI~ 64 (66) T 3go5_A 14 LESNGGFXTLNDKSSPDDIKATFGISKGQFKKALGGLXKAGKIKQDQFGTE 64 (66) T ss_dssp HHHTTTEESCCTTSCHHHHHHHHSSCHHHHHHHHHHHHHTTCEEEETTEEE T ss_pred HHHCCCEECCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEECCEEE T ss_conf 997699213799999999999979079999999888865877999389799 |