254781152

 Score =  164 bits (415), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 80/111 (72%), Positives = 92/111 (82%), Gaps = 3/111 (2%)

Query: 4   LYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEKEIIKAS- 62
           +YDRGGS+PDNDKYIAGVCGCSIR+WR+IR +LEK NKIF + GNIYN RVEKE+IKA  
Sbjct: 36  MYDRGGSVPDNDKYIAGVCGCSIRKWRSIRIVLEKANKIFSKGGNIYNYRVEKEMIKAMK 95

Query: 63  --EERQENGRKGGIKSSQMRILSKKTNNLFQGTLKPAHVFQKPESINNYSA 111
             EERQENGRKGGIKSSQMR L+ K NNLFQG L+ AH   KPE+IN  ++
Sbjct: 96  AIEERQENGRKGGIKSSQMRTLTHKNNNLFQGILESAHASYKPEAINKKTS 146

Species: Candidatus Liberibacter solanacearum
Genus: Candidatus Liberibacter
Family: Rhizobiaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 39/62 (62%), Gaps = 4/62 (6%)

Query: 1  MISLYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQE-GNIYNVRVEKEII 59
          ++++++ GG +PD+D  +A V   S++RWR I A L  F   F +E G I + R+ +E+ 
Sbjct: 33 LMAMWNAGGRLPDDDAKLARVARLSLKRWRAISADLLSF---FEREAGEIGHKRLTRELH 89

Query: 60 KA 61
          KA
Sbjct: 90 KA 91

Species: Mesorhizobium loti
Genus: Mesorhizobium
Family: Phyllobacteriaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score = 46.9 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/120 (33%), Positives = 60/120 (50%), Gaps = 12/120 (10%)

Query: 4   LYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFI-QEGNIYNVRVEKEIIKAS 62
           +YD  G I  N+++IAG   CSIR+ R + + L    KI+I   G I N R E EI  + 
Sbjct: 38  IYDACGPIDFNERWIAGELNCSIRKARALISELLDLQKIYITTRGQISNHRCEAEIENSV 97

Query: 63  EERQENGRKGGIKSSQMRILSKKTNNLFQGTLKPAHVFQKPESINNYSA-PVDF-EKINP 120
           +  Q+  R+  +K  + R  S+   N   G+        K  SIN+ S+ PV   ++I P
Sbjct: 98  KISQK-ARESVMKREEKRTESRDFVNKINGS--------KQRSINDRSSIPVPVPDRIKP 148

Species: Sinorhizobium phage PBC5
Genus: 
Family: 
Order: Caudovirales
Class: 
Phylum: 
Superkingdom: Viruses

 Score = 45.4 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 35/58 (60%)

Query: 1  MISLYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEKEI 58
          ++ +YD+   I ++ + +A VC CS +++  I   L K NK+   +  ++N RVEKE+
Sbjct: 34 LVRMYDKKAPIKEDFETLARVCNCSQKKFATIVEYLTKNNKLLQTDKGLWNARVEKEL 91

Species: Bartonella grahamii
Genus: Bartonella
Family: Bartonellaceae
Order: Rhizobiales
Class: Alphaproteobacteria
Phylum: Proteobacteria
Superkingdom: Bacteria

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 5  YDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEKEIIKA 61
          +   G +PD+D  +A + GCS + W      +         +G   N R E+E+  A
Sbjct: 33 WATEGPLPDDDARLARLAGCSTKEWAAAVEFVLSEFFE-ELDGRWTNKRCEEELAAA 88

This family consists of several hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown. Length = 88

 Score = 47.0 bits (111), Expect = 2e-06
 Identities = 18/82 (21%), Positives = 37/82 (45%), Gaps = 4/82 (4%)

Query: 1   MISLYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEKEI-- 58
           +++ +     IP +   +A     S +RWR + AIL++F    +Q    +N R ++EI  
Sbjct: 30  LMAYWATEKPIPADKAALARAAALSKKRWRAVDAILDEF--FSLQGDGWHNKRCDEEIAA 87

Query: 59  IKASEERQENGRKGGIKSSQMR 80
               E +        +++ + R
Sbjct: 88  QVEKEAKASGAAGKSVQALRTR 109

Length = 153

Probab=99.38  E-value=3.7e-13  Score=97.83  Aligned_cols=59  Identities=24%  Similarity=0.418  Sum_probs=54.5

Q ss_pred             CCCHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCEECHHHHHHHHH
Q ss_conf             921000489875027999777199999999999999853918993892421899999997
Q gi|254781152|r    1 MISLYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEKEIIK   60 (155)
Q Consensus         1 lv~MYdrGgPL~~N~r~LAg~CGCSvKkFr~aLd~Ll~~GKI~l~DG~LWN~RVEeEL~n   60 (155)
T Consensus        29 l~~yy~~~~plp~d~~~LaR~~~~s~~~~~~av~~vl~~ff-~~~~~~w~~~R~e~Ei~~   87 (88)
T pfam07120        29 LDAYWATEGPLPDDDARLARLAGCSTKEWAAAVEFVLSEFF-EELDGRWTNKRCEEELAA   87 (88)
T ss_pred             HHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH-HCCCCCEEHHHHHHHHHC
T ss_conf             99998758989724999999988992889999999999865-402687303989999864

This family consists of several hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown.

Probab=97.87  E-value=1.4e-05  Score=53.67  Aligned_cols=104  Identities=25%  Similarity=0.383  Sum_probs=73.2

Q ss_pred             CCCHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCEECHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf             92100048987502799977719999999999999985391899389242189999999756778874220111245666
Q gi|254781152|r    1 MISLYDRGGSIPDNDKYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIYNVRVEKEIIKASEERQENGRKGGIKSSQMR   80 (155)
Q Consensus         1 lv~MYdrGgPL~~N~r~LAg~CGCSvKkFr~aLd~Ll~~GKI~l~DG~LWN~RVEeEL~n~sEer~~agRkGg~~S~Q~R   80 (155)
T Consensus        30 L~~yw~t~~pip~d~~~~a~~a~~s~krw~av~~~L~~Ff--~l~~~~w~~KR~~eeiaa~~e~~a~~s-~a~~~~~~~~  106 (153)
T COG3756          30 LMAYWATEKPIPADKAALARAAALSKKRWRAVDAILDEFF--SLQGDGWHNKRCDEEIAAQVEKEAKAS-GAAGKSVQAL  106 (153)
T ss_pred             HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCCC
T ss_conf             9999865999996389999999984888877079999998--524444988888899999998677776-6302555663


Q ss_pred             HHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCHHH
Q ss_conf             6777655664301564786308411256447642343
Q gi|254781152|r   81 ILSKKTNNLFQGTLKPAHVFQKPESINNYSAPVDFEK  117 (155)
Q Consensus        81 ~~~kk~n~~fq~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (155)
T Consensus       107 --rtr~h~~~~t~~~~--------slt~~qk~~~fs~  133 (153)
T COG3756         107 --RTRAHGAAQTGALP--------SLTQSQKPSDFSP  133 (153)
T ss_pred             --CCHHHHHHHHCCCC--------CCCCCCCCCCCCC
T ss_conf             --21578988602363--------2013557867683

 Score = 36.1 bits (82), Expect = 0.004
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 25/86 (29%)

Query: 25  SIRRWR-NIRAILEKFN---KIFIQEGNIYNVRVEKEIIKASEERQE-NGRKGGIKSSQM 79
           SIR+WR   R  L++ +   K+  QE         +E  KA ++ +E N R    +S Q+
Sbjct: 86  SIRKWREEQRKRLQELDAASKVMEQEW--------RE--KAKKDLEEWNQR----QSEQV 131

Query: 80  RILSKKTNNLFQGTLKPAHVFQKPES 105
                K NN     +     +Q+P++
Sbjct: 132 E--KNKINN----RIADKAFYQQPDA 151

Probab=94.90  E-value=0.035  Score=32.67  Aligned_cols=48  Identities=25%  Similarity=0.173  Sum_probs=43.1

Q ss_pred             CHHCCCCCCCCHH----HHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCEE
Q ss_conf             1000489875027----99977719999999999999985391899389242
Q gi|254781152|r    3 SLYDRGGSIPDND----KYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIY   50 (155)
Q Consensus         3 ~MYdrGgPL~~N~----r~LAg~CGCSvKkFr~aLd~Ll~~GKI~l~DG~LW   50 (155)
                      .|.++||.++.+|    +.+....|+|++.|-+|+-.|++.++|.+.+++++
T Consensus       232 ~L~~~~g~l~~~DkS~pe~I~~~f~~SK~~fK~aiG~L~K~~~I~~~~~~i~  283 (285)
T 3go5_A          232 YLESNGGFMTLNDKSSPDDIKATFGISKGQFKKALGGLMKAGKIKQDQFGTE  283 (285)
T ss_dssp             HHHHTTTEESCCTTSCHHHHHHHHSSCHHHHHHHHHHHHHTTCEEEETTEEE
T ss_pred             HHHHCCCEEECCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEECCEEE
T ss_conf             9997699160699999999999879099999998567641865999499799

Probab=95.30  E-value=0.032  Score=33.74  Aligned_cols=47  Identities=26%  Similarity=0.187  Sum_probs=41.2

Q ss_pred             HHCCCCCCCCHH----HHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCEE
Q ss_conf             000489875027----99977719999999999999985391899389242
Q gi|254781152|r    4 LYDRGGSIPDND----KYIAGVCGCSIRRWRNIRAILEKFNKIFIQEGNIY   50 (155)
Q Consensus         4 MYdrGgPL~~N~----r~LAg~CGCSvKkFr~aLd~Ll~~GKI~l~DG~LW   50 (155)
                      |=++||-+|.++    +.+..+.|+|++.|-+|+-.|++.++|.+.+++++
T Consensus        14 L~~~gG~lpl~DKS~pe~I~~~fg~SKkaFKrAiG~L~K~~~I~i~~~gI~   64 (66)
T 3go5_A           14 LESNGGFXTLNDKSSPDDIKATFGISKGQFKKALGGLXKAGKIKQDQFGTE   64 (66)
T ss_dssp             HHHTTTEESCCTTSCHHHHHHHHSSCHHHHHHHHHHHHHTTCEEEETTEEE
T ss_pred             HHHCCCEECCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEECCEEE
T ss_conf             997699213799999999999979079999999888865877999389799